Citrus Sinensis ID: 026423

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MILRSFEMTEFGTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV
Secondary Structure (PSIPRED)
ccccHHHHHHHHcccccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHccccHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEccHccccccccccHHHHccccccHHHHHHHHcccHHHHHHHHHHcHHHHHccccccccHHHHHHHcccHHHHHHHHHHccHHHHccccccccHHHHHHHcccHHHHHHHHHHccHHcccccccHHHHHHccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccHcccccccccccHHHHHHHcccccEEEEEEEccEEEEc
Coil and Loop (DISEMBL)
milrsfemtefgtdykeptmdqelpttmDHELLNVLRRGDEHQISLIAGRMQNIFstmsprgntvLHMAIRFRNHKVIPEILRRRDSLlrknnwkgetplhiaarvgdpAIVSTILKYapaitngtesepesllritddegntplhnavrNKHENVVRMLVKkdriplgylnnaeqtplsiaidsslTDIACFIidqrpeslnhrlpeELTLLHSAVMRQNYGEPMIFISLNKCLSIV
Flexible Loop (DISEMBL)
milrsfemtefgtdykeptmdqelpTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRfrnhkvipeILRRRDSllrknnwkgetplhiaarvgdPAIVSTILKYAPAitngtesepeSLLRITDdegntplhnavrnkhenvVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV
Low Complexity Region (SEG)
MILRSFEMTEFGTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV
Disordered region (IsUnstruct)
******************************ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAIT***************************NKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLS**
Disordered Region (DISOPRED)
*ILRSFEMTEFGTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV
Disordered Region (DISEMBL)
MILRSFEMTEFGTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV
Disordered Region (DISPRO)
MILRSFEMTEFGTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MILRSFEMTEFGTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	238	2.2.26 [Sep-21-2011]
Q96NW4	1050	Ankyrin repeat domain-con	yes	no	0.508	0.115	0.308	9e-09
Q5REW9	1050	Ankyrin repeat domain-con	yes	no	0.508	0.115	0.308	1e-08
Q1RJR6	273	Putative ankyrin repeat p	yes	no	0.684	0.597	0.227	3e-08
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.495	0.225	0.279	3e-08
Q4UMH6	1179	Putative ankyrin repeat p	yes	no	0.609	0.122	0.306	6e-08
Q9ERK0	786	Receptor-interacting seri	yes	no	0.651	0.197	0.283	6e-08
Q6P6B7	361	Ankyrin repeat domain-con	no	no	0.537	0.354	0.314	1e-07
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.630	0.076	0.296	1e-07
P57078	832	Receptor-interacting seri	no	no	0.651	0.186	0.289	2e-07
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.310	0.139	0.329	2e-07

>sp|Q96NW4|ANR27_HUMAN Ankyrin repeat domain-containing protein 27 OS=Homo sapiens GN=ANKRD27 PE=1 SV=2

 Score = 60.5 bits (145), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 25/146 (17%)

Query: 46  LIAGRMQNIFSTMSP-----RGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPL 100
           L++GR+ N  S ++P     RG+T LH+A       +I ++L  + +++   ++ G TPL
Sbjct: 443 LVSGRL-NDPSVVTPFSRDDRGHTPLHVAAVCGQASLI-DLLVSKGAMVNATDYHGATPL 500

Query: 101 HIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRML 160
           H+A + G  ++   +L Y  +              + D+ GNTPLH A    HE+ V+ L
Sbjct: 501 HLACQKGYQSVTLLLLHYKASA------------EVQDNNGNTPLHLACTYGHEDCVKAL 548

Query: 161 VKKD----RIPLGYLNNAEQTPLSIA 182
           V  D    R+ +G  N    TPL IA
Sbjct: 549 VYYDVESCRLDIG--NEKGDTPLHIA 572

May be a Rab21 guanine exchange factor and regulate endosome dynamics.
Homo sapiens (taxid: 9606)

>sp|Q5REW9|ANR27_PONAB Ankyrin repeat domain-containing protein 27 OS=Pongo abelii GN=ANKRD27 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 25/146 (17%)

Query: 46  LIAGRMQNIFSTMSP-----RGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPL 100
           L++GR+ N  S ++P     RG+T LH+A       +I ++L  + +++   ++ G TPL
Sbjct: 443 LVSGRL-NDPSVVTPFSRDDRGHTPLHVAALCGQASLI-DLLVSKGAVVNATDYHGATPL 500

Query: 101 HIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRML 160
           H+A + G  ++   +L Y  +              + D+ GNTPLH A    HE+ V+ L
Sbjct: 501 HLACQKGYQSVTLLLLHYKASA------------EVQDNNGNTPLHLACTYGHEDCVKAL 548

Query: 161 VKKD----RIPLGYLNNAEQTPLSIA 182
           V  D    R+ +G  N    TPL IA
Sbjct: 549 VYYDVESCRLDIG--NEKGDTPLHIA 572

May be a Rab21 guanine exchange factor and regulate endosome dynamics.

Pongo abelii (taxid: 9601)

>sp|Q1RJR6|Y317_RICBR Putative ankyrin repeat protein RBE_0317 OS=Rickettsia bellii (strain RML369-C) GN=RBE_0317 PE=4 SV=1

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 22/185 (11%)

Query: 14  DYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFR 73
           D+   ++D ++    D ++   L   +E  I+                GNT+LH AI   
Sbjct: 57  DFYSRSVDNKVIVNFDEDIFRYLINLEEFDIN-----------AEDKNGNTLLHAAIDQG 105

Query: 74  NHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESL 133
             +V+  +   ++  +   +  G +PLH+A +  +P IV  +L Y     N         
Sbjct: 106 KSEVVKFLTSYKNLEVNTKDLGGNSPLHLAIKSNNPEIVEMLLSYENINVNEK------- 158

Query: 134 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACF 193
               D  G+T LH A+R+ +  ++ ML+ ++ I +   +N  +TPL  A+ S+  +I   
Sbjct: 159 ----DKYGDTTLHKAIRSYNHKIIEMLLLREEIDVNEKDNQGETPLHGAVKSNRPEIVKM 214

Query: 194 IIDQR 198
           ++  +
Sbjct: 215 LLSHK 219

Rickettsia bellii (strain RML369-C) (taxid: 336407)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 69/129 (53%), Gaps = 11/129 (8%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G T LH A R  +  ++ +++ ++  ++ + + KG+T LH+A +  +  IV  +++    
Sbjct: 159 GKTALHSAARNGHTVIVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLME---- 214

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
             +G      SL+   D++GNTPLH AVR     +V+ ++K   +    +N + +T L I
Sbjct: 215 -ADG------SLINSADNKGNTPLHIAVRKNRAEIVQTVLKYCEVSRVAVNKSGETALDI 267

Query: 182 AIDSSLTDI 190
           A  + L +I
Sbjct: 268 AEKTGLHEI 276

Arabidopsis thaliana (taxid: 3702)

>sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1

 Score = 57.8 bits (138), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 15/160 (9%)

Query: 62   GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
            G T+LH A +  N  ++  +++ +  +  K N  GET LH AA  G+  +VS +      
Sbjct: 931  GETILHFAAKSGNLNLVNWLIKNKADIHAKTN-SGETILHFAAESGNLNLVSLL------ 983

Query: 122  ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
            I NGT+      +    D+G T LH AV + + N+V +L+ K  I +    N+ +T L  
Sbjct: 984  IHNGTD------INTKTDDGLTALHYAVESGNLNLVSLLIHKG-IDVNAKTNSGETILHF 1036

Query: 182  AIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQN 221
            A+D    D+   ++  R   +N +  + LT LH AV   N
Sbjct: 1037 AVDLGSLDLVSLLM-VRGADVNAKTDDGLTALHYAVESDN 1075

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

>sp|Q9ERK0|RIPK4_MOUSE Receptor-interacting serine/threonine-protein kinase 4 OS=Mus musculus GN=Ripk4 PE=1 SV=2

 Score = 57.8 bits (138), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 49/173 (28%), Positives = 78/173 (45%), Gaps = 18/173 (10%)

Query: 61  RGNTVLHMAIRFRNHKVIPEILRRRDSLLRKN--NWKGETPLHIAARVGDPAIVSTILKY 118
           +G+T LHMA+  +   ++  +L R+ S+  K+   W   T LH AA+ GD A    +L+ 
Sbjct: 472 KGSTPLHMAVERKGRGIVELLLARKTSVNAKDEDQW---TALHFAAQNGDEASTRLLLEK 528

Query: 119 APAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTP 178
             ++               D EG TP+H A ++  EN+VR L+++  + +G        P
Sbjct: 529 NASVNE------------VDFEGRTPMHVACQHGQENIVRTLLRRG-VDVGLQGKDAWLP 575

Query: 179 LSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISL 231
           L  A       I   +  Q   S+N +  +  T LH A  R +Y    I I L
Sbjct: 576 LHYAAWQGHLPIVKLLAKQPGVSVNAQTLDGRTPLHLAAQRGHYRVARILIDL 628

Involved in stratified epithelial development (By similarity). It is a direct transcriptional target of TP63. Plays a role in NF-kappa-B activation.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6P6B7|ANR16_HUMAN Ankyrin repeat domain-containing protein 16 OS=Homo sapiens GN=ANKRD16 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 12/140 (8%)

Query: 64  TVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAIT 123
           T L MA   +N  VI E++    + L KN   G    HIA+R GDP I+  +L   P   
Sbjct: 106 TPLMMACTRKNLGVIQELVEHGANPLLKNK-DGWNSFHIASREGDPLILQYLLTVCPGAW 164

Query: 124 NGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAI 183
                + ES +R       TPLH A  + H   V++L+K+ +    Y +N   T L  AI
Sbjct: 165 -----KTESKIR------RTPLHTAAMHGHLEAVKVLLKRCQYEPDYRDNCGVTALMDAI 213

Query: 184 DSSLTDIACFIIDQRPESLN 203
                D+A  ++D+    L+
Sbjct: 214 QCGHIDVARLLLDEHGACLS 233

Homo sapiens (taxid: 9606)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 70/165 (42%), Gaps = 15/165 (9%)

Query: 57  TMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTIL 116
           T + RG T LHMA R    +V+   L +  + +       +TPLHI+AR+G   IV  +L
Sbjct: 444 TTNVRGETALHMAARSGQAEVV-RYLVQDGAQVEAKAKDDQTPLHISARLGKADIVQQLL 502

Query: 117 KYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQ 176
           +   +    T S            G TPLH A R  HE+V   L+      L        
Sbjct: 503 QQGASPNAATTS------------GYTPLHLAAREGHEDVAAFLLDHG-ASLSITTKKGF 549

Query: 177 TPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQN 221
           TPL +A      ++A  ++ Q+  S +      LT LH A    N
Sbjct: 550 TPLHVAAKYGKLEVASLLL-QKSASPDAAGKSGLTPLHVAAHYDN 593

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|P57078|RIPK4_HUMAN Receptor-interacting serine/threonine-protein kinase 4 OS=Homo sapiens GN=RIPK4 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 18/173 (10%)

Query: 61  RGNTVLHMAIRFRNHKVIPEILRRRDSLLRKN--NWKGETPLHIAARVGDPAIVSTILKY 118
           RG+T LHMA+  R   V+  +L R+ S+  K+   W   T LH AA+ GD +    +L+ 
Sbjct: 518 RGSTPLHMAVERRVRGVVELLLARKISVNAKDEDQW---TALHFAAQNGDESSTRLLLEK 574

Query: 119 APAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTP 178
             ++               D EG TP+H A ++  EN+VR+L+++  + +         P
Sbjct: 575 NASVNE------------VDFEGRTPMHVACQHGQENIVRILLRRG-VDVSLQGKDAWLP 621

Query: 179 LSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISL 231
           L  A       I   +  Q   S+N +  +  T LH A  R +Y    I I L
Sbjct: 622 LHYAAWQGHLPIVKLLAKQPGVSVNAQTLDGRTPLHLAAQRGHYRVARILIDL 674

Involved in stratified epithelial development. It is a direct transcriptional target of TP63. Plays a role in NF-kappa-B activation.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 46/85 (54%)

Query: 54  IFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVS 113
           I      +G T LHMA++ R+ +V+ EIL+   ++L + + KG T LHIA R   P I S
Sbjct: 188 IVGVKDKKGQTALHMAVKGRSLEVVEEILQADYTILNERDRKGNTALHIATRKARPQITS 247

Query: 114 TILKYAPAITNGTESEPESLLRITD 138
            +L +     N   ++ E+ + + D
Sbjct: 248 LLLTFTAIEVNAINNQKETAMDLAD 272

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
302143222	617	unnamed protein product [Vitis vinifera]	0.714	0.275	0.4	3e-20
147820412	624	hypothetical protein VITISV_004974 [Viti	0.714	0.272	0.4	5e-20
147865209	563	hypothetical protein VITISV_038601 [Viti	0.810	0.342	0.338	1e-18
225468543	643	PREDICTED: ankyrin repeat-containing pro	0.802	0.297	0.352	1e-18
224117416	451	predicted protein [Populus trichocarpa]	0.806	0.425	0.341	3e-18
255547566	581	ankyrin repeat-containing protein, putat	0.806	0.330	0.301	5e-18
147790979	1398	hypothetical protein VITISV_003041 [Viti	0.718	0.122	0.348	5e-18
224117420	577	predicted protein [Populus trichocarpa]	0.806	0.332	0.341	6e-18
297745183	270	unnamed protein product [Vitis vinifera]	0.697	0.614	0.360	6e-18
147799695	595	hypothetical protein VITISV_033922 [Viti	0.600	0.240	0.363	6e-18

>gi|302143222|emb|CBI20517.3| unnamed protein product [Vitis vinifera]

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/175 (40%), Positives = 101/175 (57%), Gaps = 5/175 (2%)

Query: 59  SPRGNTVLHMAIRFRNHKVIPEILRRRD--SLLRKNNWKGETPLHIAARVGDPAIVSTIL 116
           S R NT LH+A R  N K++  +L      SLL +N+ K ETPLHIAAR G   +V  ++
Sbjct: 42  SHRKNTALHIAARVGNKKMVEALLSEGTPASLLTENS-KHETPLHIAARSGHVHVVKFLI 100

Query: 117 KYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK-DRIPLGYLNNAE 175
            +A   T+      + +LR+ + EGNTPLH AVRN H + V +LV+  D   L  LNNA 
Sbjct: 101 DWATQSTDVEAGGIQQVLRMRNMEGNTPLHEAVRNGHHSTVLVLVEANDSDLLVSLNNAG 160

Query: 176 QTPLSIAIDSSLTDIACFII-DQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFI 229
           ++PL +A+D   ++I   I+ +  P SL HR  +  T+LH A++R +     I I
Sbjct: 161 ESPLFMAVDVRASEIVKTILPNSNPYSLLHRSSDGQTILHRAILRADLKTMKIII 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147820412|emb|CAN63354.1| hypothetical protein VITISV_004974 [Vitis vinifera]

 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/175 (40%), Positives = 101/175 (57%), Gaps = 5/175 (2%)

Query: 59  SPRGNTVLHMAIRFRNHKVIPEILRRRD--SLLRKNNWKGETPLHIAARVGDPAIVSTIL 116
           S R NT LH+A R  N K++  +L      SLL +N+ K ETPLHIAAR G   +V  ++
Sbjct: 42  SHRKNTALHIAARVGNKKMVEALLSEGTPASLLTENS-KHETPLHIAARSGHVHVVKFLI 100

Query: 117 KYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK-DRIPLGYLNNAE 175
            +A   T+      + +LR+ + EGNTPLH AVRN H + V +LV+  D   L  LNNA 
Sbjct: 101 DWATQSTDVEAGGIQQVLRMRNMEGNTPLHEAVRNGHHSTVLVLVEANDSDLLVSLNNAG 160

Query: 176 QTPLSIAIDSSLTDIACFII-DQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFI 229
           ++PL +A+D   ++I   I+ +  P SL HR  +  T+LH A++R +     I I
Sbjct: 161 ESPLFMAVDVRASEIVKTILPNSNPYSLLHRSSDGQTILHRAILRADLKTMKIII 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865209|emb|CAN79828.1| hypothetical protein VITISV_038601 [Vitis vinifera]

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 108/204 (52%), Gaps = 11/204 (5%)

Query: 28  MDHELLNVLRRGD-EHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRD 86
           MD +L      G  ++ +  I     ++   ++P  NTVLH+A +F   K +  IL+   
Sbjct: 35  MDPQLYKAAAGGKTKYDLRZILKNFXDLGDELTPMENTVLHIAAQFGKQKCVDLILKEHS 94

Query: 87  --SLLRKNNWKGETPLHIAARVGDPAIVSTILKYA------PA-ITNGTESEPESLLRIT 137
             SLLR+ N  G+TPLH+AAR G   +V  ++  A      P+ I NG E   E +LR  
Sbjct: 95  DSSLLRRVNKHGDTPLHLAAREGYQKVVEALIHAAKPQPPQPSDIENGVEFH-EGMLRTM 153

Query: 138 DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 197
           + EG+T LH AVR +H  VV++L+K+D       N+   TPL +A +    D+   I++ 
Sbjct: 154 NQEGDTALHEAVRYRHPKVVKLLIKEDAKFTYGPNHKGNTPLYMAAERGFDDLVDIILEN 213

Query: 198 RPESLNHRLPEELTLLHSAVMRQN 221
              S +HR  +  T LH+AV+ ++
Sbjct: 214 SVTSSDHRGLKGRTALHAAVISKH 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225468543|ref|XP_002270109.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/204 (35%), Positives = 110/204 (53%), Gaps = 13/204 (6%)

Query: 26  TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILR-- 83
           T MD +L      GD H ++    R  +I   ++P+ NTVLH+A +F   + +  IL   
Sbjct: 57  TIMDPKLYVAAADGDTHALN---ARKDDIQVKLTPKKNTVLHVAAQFGQAECVKWILGLG 113

Query: 84  RRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNG-TE----SEPESLLRITD 138
              SLL++ N KG+TPLH+AAR G   +V  ++  A  +  G TE    ++   +LR+ +
Sbjct: 114 SPSSLLQQPNEKGDTPLHLAAREGHWTVVKNLIDAAKKLGEGDTERGAVADCTVILRMIN 173

Query: 139 DEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE-QTPLSIAIDSSLTDIACFIIDQ 197
           ++ +T LH AVRN H  VV++L++ D     Y  NAE  TPL IA +    D+   I+D+
Sbjct: 174 NDKDTALHEAVRNHHPEVVKLLIQDDP-DFAYGANAEGNTPLYIAAEWGFGDLVQMILDK 232

Query: 198 RPESLNHRLPEELTLLHSAVMRQN 221
              S  H   +  T LH+AV+  N
Sbjct: 233 Y-SSPAHNGIKGRTALHAAVILNN 255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117416|ref|XP_002317569.1| predicted protein [Populus trichocarpa] gi|222860634|gb|EEE98181.1| predicted protein [Populus trichocarpa]

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/199 (34%), Positives = 112/199 (56%), Gaps = 7/199 (3%)

Query: 28  MDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDS 87
           MD  L  V++ G+ + +  +      + + ++P+GNT LH+A++F +  V+ EI  R  S
Sbjct: 1   MDSRLYRVVKSGNVYILLQLLNEKPRLLTKLTPQGNTPLHIAVQFGHKGVVVEIYNRCRS 60

Query: 88  LLRKNNWKGETPLHIAARVGDPAIVSTILK---YAPAIT--NGTESEPESLLRITDDEGN 142
           LL + N  G++PLH+AAR G  +IV  ++K    A  I+  NG   + + +LR  ++E N
Sbjct: 61  LLTRPNSSGDSPLHVAARCGHFSIVDFLVKENLSAKRISTENGKTGKFD-ILRQGNNENN 119

Query: 143 TPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESL 202
           T LH AVRN + +VV++L++ D     + N A ++PL +A      DI   I+   P S 
Sbjct: 120 TVLHEAVRNGNMSVVKLLLRVDTKLACFENYAGESPLFLAAREGKKDILNQILISTPASA 179

Query: 203 NHRLPEELTLLHSAVMRQN 221
            H   E  T LH+AV+ ++
Sbjct: 180 -HGGSEGQTALHAAVIERH 197

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547566|ref|XP_002514840.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223545891|gb|EEF47394.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 105/196 (53%), Gaps = 4/196 (2%)

Query: 28  MDHELLNVLRRGDEHQI-SLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRD 86
           MD  L   +  GD +   +LI      +F   + + NT+LH+A +    +V   ++    
Sbjct: 1   MDPSLYQAITSGDLNCFDNLIGKNASKLFQVTADQENTILHVAAKLETLQVAERVIGLCP 60

Query: 87  SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLH 146
           SLL K N+ G++PLHIAAR+G   +   ++  A  +    E E   LLR+ + + +T LH
Sbjct: 61  SLLHKPNYNGDSPLHIAARLGRVRMCRLLINCADLLEVEVEKE---LLRMQNLDHDTALH 117

Query: 147 NAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRL 206
           +AVRN H   VR+L+++D      +N A ++PL +A+D    +I+  I+   P   + + 
Sbjct: 118 DAVRNGHFETVRLLIQQDSQLTRVINKAGESPLFLAVDRRSYEISQHILQAAPAVCSFKG 177

Query: 207 PEELTLLHSAVMRQNY 222
              + +LH+A++R ++
Sbjct: 178 RNSMNVLHAAIIRADF 193

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790979|emb|CAN70274.1| hypothetical protein VITISV_003041 [Vitis vinifera]

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/181 (34%), Positives = 98/181 (54%), Gaps = 10/181 (5%)

Query: 43  QISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRR--RDSLLRKNNWKGETPL 100
           ++S I  R  ++   ++P  NTVLH+A +F   + +  IL +    SLL++ N  GETP+
Sbjct: 51  EVSDILKRFHDLGDKLTPMENTVLHIAAQFGEQERVQLILEQPSGSSLLQRINKLGETPV 110

Query: 101 HIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRML 160
           H+AAR G   +V  ++          E+E    LR+ + EG+T LH AVR  H  VVR+L
Sbjct: 111 HLAAREGHLNVVQALID--------AETERVEFLRMKNQEGDTALHEAVRYHHPKVVRLL 162

Query: 161 VKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQ 220
           ++KD       N+   TPL +A +    D+   I+D R  S +HR     T LH+AV+ +
Sbjct: 163 IEKDTEFTYGPNDKGNTPLYMAAERGFDDLVNIILDNRRSSPDHRGLMGRTALHAAVISK 222

Query: 221 N 221
           +
Sbjct: 223 H 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117420|ref|XP_002317570.1| predicted protein [Populus trichocarpa] gi|222860635|gb|EEE98182.1| predicted protein [Populus trichocarpa]

 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/199 (34%), Positives = 111/199 (55%), Gaps = 7/199 (3%)

Query: 28  MDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDS 87
           MD  L  V + G+ + +  +      + + ++P+GNT LH+A++F +  V+ EI  R  S
Sbjct: 1   MDSRLYRVAKSGNVYILLQLLNENPRLLTKLTPQGNTPLHIAVQFGHKGVVVEIYNRCRS 60

Query: 88  LLRKNNWKGETPLHIAARVGDPAIVSTILK---YAPAIT--NGTESEPESLLRITDDEGN 142
           LL + N  G++PLH+AAR G  +IV  ++K    A  I+  NG   + + +LR  ++E N
Sbjct: 61  LLTRPNSSGDSPLHVAARCGHFSIVDFLVKENLSAKRISTENGKTGKFD-ILRQGNNENN 119

Query: 143 TPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESL 202
           T LH AVRN + +VV++L++ D     + N A ++PL +A      DI   I+   P S 
Sbjct: 120 TVLHEAVRNGNMSVVKLLLRVDTKLACFENYAGESPLFLAAREGKKDILNQILISTPAS- 178

Query: 203 NHRLPEELTLLHSAVMRQN 221
            H   E  T LH+AV+ ++
Sbjct: 179 AHGGSEGQTALHAAVIERH 197

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745183|emb|CBI39175.3| unnamed protein product [Vitis vinifera]

 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 96/169 (56%), Gaps = 3/169 (1%)

Query: 58  MSPRGNTVLHMAIRFRNHKVIPEILRRR--DSLLRKNNWKGETPLHIAARVGDPAIVSTI 115
           ++P+ NT+LH+A +F     +  IL+ R   SLL + N KG+TPLH+AAR G   +   +
Sbjct: 100 LTPKRNTILHIAAQFGQIDCVNWILQFRPLSSLLLQPNLKGDTPLHLAAREGYWMVTQAL 159

Query: 116 LKYAPAITNGTE-SEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNA 174
           ++ A A+ +G+     + +LR+T++E +T LH AVR  H NVV++L+ KD   +   N +
Sbjct: 160 IEAAKALPSGSGIGADKMMLRMTNNENDTALHEAVRYNHSNVVKLLILKDPDFIYGANFS 219

Query: 175 EQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYG 223
             TPL +A +    ++   IID    S  H      T LH+AV+  N G
Sbjct: 220 GGTPLYMAAERGFHELVQIIIDNTRTSPAHSGLTGRTALHAAVICNNEG 268

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147799695|emb|CAN77325.1| hypothetical protein VITISV_033922 [Vitis vinifera]

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 90/157 (57%), Gaps = 14/157 (8%)

Query: 80  EILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDD 139
           E +R    LL + N KG+TPLH A+R G P +V   +  + A+ +  E+ P +LLR+ + 
Sbjct: 35  EAIRLNPELLSEANMKGDTPLHTASRTGCPRMVELFISCSEALCDDIENAPRNLLRMVNQ 94

Query: 140 EGNTPLHNAVRN-------------KHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSS 186
           EG+T LH AVRN              H +VV++LVK D   L   N A ++PL +A++  
Sbjct: 95  EGDTALHVAVRNGHLDTALHAAVKYDHLDVVKLLVKADIELLHMDNKANESPLYLAVERG 154

Query: 187 LTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYG 223
           L D   +++++ P+  +HR  + LT LH+AV+R + G
Sbjct: 155 LFDFTKYMLNKCPKC-SHRGTKGLTALHAAVVRTHQG 190

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.806	0.311	0.262	2.7e-10
TAIR|locus:2128771	641	AT4G03450 "AT4G03450" [Arabido	0.819	0.304	0.268	4.2e-10
TAIR|locus:2138391	572	AT4G05040 "AT4G05040" [Arabido	0.873	0.363	0.239	4.8e-10
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.684	0.240	0.266	9.2e-10
TAIR|locus:2170081	535	AT5G50140 "AT5G50140" [Arabido	0.638	0.284	0.304	2.2e-09
RGD|1311691	786	Ripk4 "receptor-interacting se	0.840	0.254	0.277	5.3e-09
TAIR|locus:2031948	627	AT1G05640 "AT1G05640" [Arabido	0.563	0.213	0.303	5.3e-09
TAIR|locus:2128791	683	AT4G03470 [Arabidopsis thalian	0.857	0.298	0.247	1.1e-08
CGD|CAL0003397	249	orf19.5961 [Candida albicans (	0.478	0.457	0.301	1.5e-08
UNIPROTKB|Q5ANE2	249	NAS6 "Potential proteasome-int	0.478	0.457	0.301	1.5e-08

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 54/206 (26%), Positives = 104/206 (50%)

Query:    21 DQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFST---MSPRGNTVLHMAIRFRNHKV 77
             D++    M+  +L  +R GD+  +SL+     ++  T   +  +GN++LH+A    +  +
Sbjct:    30 DKDESEIMNPAILCAVRAGDK--VSLLKRINDDVKVTQRLVDNQGNSILHIAAALGHVHI 87

Query:    78 IPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRIT 137
             +  I+    +LL+  N  GET LH+AAR G   IV  ++++   IT    S  ++ +   
Sbjct:    88 VEFIISTFPNLLQNVNLMGETTLHVAARAGSLNIVEILVRF---ITES--SSYDAFIAAK 142

Query:   138 DDEGNTPLHNAVRNKHENVVRMLVK-KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID 196
                G+T LH A++ KH  V   LV  K  +     NN E +PL +A+++   ++   +++
Sbjct:   143 SKNGDTALHAALKGKHVEVAFCLVSVKHDVSFDK-NNDEASPLYMAVEAGYHELVLKMLE 201

Query:   197 QRPE-SLNHRLPEELTLLHSAVMRQN 221
                  S+   +    +++H+A M+ N
Sbjct:   202 SSSSPSILASMFSGKSVIHAA-MKAN 226

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128771 AT4G03450 "AT4G03450" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 4.2e-10, P = 4.2e-10
 Identities = 54/201 (26%), Positives = 97/201 (48%)

Query:    27 TMDHELLNVLRRGDEHQISLIAGRMQNIFSTM-SPRGNTVLHMAIRFRNHKVIPEILRRR 85
             +M+ E+ + +R G+   +  +        +   +  G+  LH+A  +   +++  I+   
Sbjct:    35 SMNPEIFSAMRAGNVKFLDKMKTNNNTPLACFRNETGDFTLHLAAAWGRLELVKRIVSEC 94

Query:    86 DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNG-TESEPE--SLLRITDDEGN 142
               LL + N K + PLH AA  G  A+V   +     I++G +E E E  +L  + D +GN
Sbjct:    95 PCLLLETNSKDQIPLHAAAAAGRLAVVEAFVARVNEISDGLSEEERERVNLYAMKDIDGN 154

Query:   143 TPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDS-SLTDI-ACFIIDQRPE 200
             T LH A++  H      LVK + +     NN   +PL  AI + SLT + A   +  +  
Sbjct:   155 TALHLALKGGHLKTAACLVKANHLASFLANNHGVSPLFTAIIAGSLTLVEAMMYVPGQTC 214

Query:   201 SLNHRLPEELTLLHSAVMRQN 221
             +L  +L    +L+H+A+  +N
Sbjct:   215 NLASKLEGRKSLVHAALKAKN 235

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2138391 AT4G05040 "AT4G05040" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 4.8e-10, P = 4.8e-10
 Identities = 53/221 (23%), Positives = 107/221 (48%)

Query:    28 MDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDS 87
             M+ E+ + L  GD+  + ++ G    +    S RG++VLH+A R+ + +++  I+     
Sbjct:    81 MNTEVFSGLSDGDKECLEMLKGVGTPMACLKSDRGDSVLHLAARWGHLELVKNIISECPC 140

Query:    88 LLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLR---ITDDEGNTP 144
             L+ + N+K + PLH+AA  G  AIV  ++      ++    E    L    + D  GNT 
Sbjct:   141 LVLELNFKDQLPLHVAAHAGHSAIVEALVASVTFFSDRLAEEDRERLNPYVLRDKYGNTA 200

Query:   145 LHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFII--------D 196
             LH A+  ++  +   LV +++      NN   + L +A+++    +   I+        +
Sbjct:   201 LHLAIEGRYMEMAASLVNENQNASFLENNEGISSLYMAVEAGDVTLVKEILKTAGNNDLE 260

Query:   197 QRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI 237
              R  +L+ +L     L+H A+  ++ G  ++ + LN+  S+
Sbjct:   261 GRNSNLDSKLEGRKHLVHVALNARSIG--VLDVILNEYPSL 299

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 9.2e-10, P = 9.2e-10
 Identities = 44/165 (26%), Positives = 81/165 (49%)

Query:    28 MDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDS 87
             M  + +  +R GDE  +  +   +    S+++  GNT+LH+A    +  ++  IL     
Sbjct:    97 MGPKTIAAVRAGDETYLRDMKFDVNIALSSVNDHGNTMLHLAAAAGHTDLVCYILNAYPG 156

Query:    88 LLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHN 147
             LL K+N  GE  LH+AA  G  A+V  ++ +   I+       + +    D   +  LH 
Sbjct:   157 LLMKSNSMGEVALHVAAGAGHLAVVEALVSFIKDISCNKPGVAKKIYFAKDRHQDNALHV 216

Query:   148 AVRNKHENVVRMLVKKDRIPLGYL-NNAEQTPLSIAIDSSLTDIA 191
             +++ KH  V   LV  ++  L ++ NN   +PL +A+++   D+A
Sbjct:   217 SLKRKHLKVASCLVCAEQ-SLSFVANNDGVSPLYLAVEAGQADLA 260

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2170081 AT5G50140 "AT5G50140" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 50/164 (30%), Positives = 85/164 (51%)

Query:    62 GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKY-AP 120
             G T LH+A++  N +++ +I+    SL+   N K +TPLH+AAR+G  +I+  +L+  A 
Sbjct:    27 GGTFLHLAVKLGNEELVKKIVEIHPSLVSSTNTKSDTPLHLAARLGHTSILLLMLESTAE 86

Query:   121 AITNGTESEPESL--LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTP 178
             +I +  E+ P  L    + + +G TPLH AV N     +   + K   PL + +   QT 
Sbjct:    87 SIESLEETVPNDLKLAEMVNKDGFTPLHCAVMNGSVETLTAFINK--APLSFDSVTLQTS 144

Query:   179 LSIA-IDSSLTDIACFIIDQRPESLNHRLPEEL-----TLLHSA 216
              ++  + +    +  FI   +  +L  RL  EL     T+LH+A
Sbjct:   145 ETVFHLAARHKKMEAFIFMAKNANLR-RLLYELDGEGNTVLHAA 187

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|1311691 Ripk4 "receptor-interacting serine-threonine kinase 4" [Rattus norvegicus (taxid:10116)]

 Score = 158 (60.7 bits), Expect = 5.3e-09, P = 5.3e-09
 Identities = 61/220 (27%), Positives = 99/220 (45%)

Query:    21 DQELPTTMDHELLNV-LRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIP 79
             D +L       LL++ +  G E  +  +     N   T + +G+T LHMA+  R   ++ 
Sbjct:   432 DVDLVLDSSASLLHLAVEAGQEECVKWLLLNNANPNLT-NKKGSTPLHMAVERRGRGIVE 490

Query:    80 EILRRRDSLLRKNN--WKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRIT 137
              +L R+ S+  K+   W   T LH AA+ GD A    +L+      N + +E        
Sbjct:   491 LLLARKTSVNAKDEDQW---TALHFAAQNGDEASTRLLLE-----KNASVNE-------V 535

Query:   138 DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 197
             D EG TP+H A ++  EN+VR L+++  + +G        PL  A       I   +  Q
Sbjct:   536 DFEGRTPMHVACQHGQENIVRTLLRRG-VDVGLQGKDAWLPLHYAAWQGHLPIVKLLAKQ 594

Query:   198 RPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI 237
                S+N +  +  T LH A  R +Y    I I L+  ++I
Sbjct:   595 PGVSVNAQTLDGRTPLHLAAQRGHYRVARILIDLSSDINI 634

GO:0002009 "morphogenesis of an epithelium" evidence=IEA;ISO

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;ISO

TAIR|locus:2031948 AT1G05640 "AT1G05640" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 5.3e-09, P = 5.3e-09
 Identities = 44/145 (30%), Positives = 68/145 (46%)

Query:    38 RGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGE 97
             +G    ++L+     ++       G T LH A R  + +V+  ++    S+  + + KG+
Sbjct:   232 QGHTDVVNLLLKTDSHLAKIAKNNGKTALHSAARMGHREVVKSLIGNDASIGFRTDKKGQ 291

Query:    98 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 157
             T LH+A +  +  IV  ++K  PAI           L + D +GNTPLH A       +V
Sbjct:   292 TALHMAVKGQNEGIVLELVKPDPAI-----------LSVEDSKGNTPLHTATNKGRIKIV 340

Query:   158 RMLVKKDRIPLGYLNNAEQTPLSIA 182
             R LV  D I L  +N A  T L IA
Sbjct:   341 RCLVSFDGINLNAMNKAGDTALDIA 365

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128791 AT4G03470 [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 54/218 (24%), Positives = 106/218 (48%)

Query:    28 MDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDS 87
             M+ E+L+ L  G+E  +  +      +    + RG++VLH+A  + + +++  I+     
Sbjct:    87 MNAEMLSTL--GNEEWLEKLRSHGTPLTCLKNDRGDSVLHLAATWSHLELVKNIVSECSC 144

Query:    88 LLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLR---ITDDEGNTP 144
             LL ++N K + PLH+AAR+G  A+V  ++      +     E   +L    + D  G+T 
Sbjct:   145 LLMESNSKDQLPLHVAARMGHLAVVEDLVASVTFFSARLAEEDREILNPYLLKDINGDTA 204

Query:   145 LHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQ-TPLSIAI---DSSLTDIACFIIDQRPE 200
             L+ A++  +  V   LV  +R    +L   +  +PL +A+   D+SL  +   + +  P+
Sbjct:   205 LNLALKGHYTEVALCLVNANR-QASFLACKDGISPLYLAVEAKDASL--VKAMLGNDGPQ 261

Query:   201 SLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV 238
               N  L     L H+A+   +    ++ + LN+  S+V
Sbjct:   262 RKNLNLEGRKYLAHAAL--NSLSTDILDVILNEYPSLV 297

GO:0005739 "mitochondrion" evidence=ISM

CGD|CAL0003397 orf19.5961 [Candida albicans (taxid:5476)]

 Score = 146 (56.5 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 38/126 (30%), Positives = 63/126 (50%)

Query:    62 GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
             G T LH+AI   N+ ++ E++    +  R  + KG TPLH AA +G   I+  +++    
Sbjct:   128 GTTCLHLAISKNNYDIVKELIETYKANCRIKDKKGYTPLHRAASIGSIPIIKLLVEKGKI 187

Query:   122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
               N             D++G T LH+A+   H +V  +LVK    P   +NN  +TP+ +
Sbjct:   188 NINAQ-----------DNDGWTSLHHALAEGHGDVAVLLVKLGADP-NIVNNDGETPVKV 235

Query:   182 AIDSSL 187
             A+D  +
Sbjct:   236 AVDDKV 241

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005838 "proteasome regulatory particle" evidence=IEA

GO:0070682 "proteasome regulatory particle assembly" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|Q5ANE2 NAS6 "Potential proteasome-interacting protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 146 (56.5 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 38/126 (30%), Positives = 63/126 (50%)

Query:    62 GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
             G T LH+AI   N+ ++ E++    +  R  + KG TPLH AA +G   I+  +++    
Sbjct:   128 GTTCLHLAISKNNYDIVKELIETYKANCRIKDKKGYTPLHRAASIGSIPIIKLLVEKGKI 187

Query:   122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
               N             D++G T LH+A+   H +V  +LVK    P   +NN  +TP+ +
Sbjct:   188 NINAQ-----------DNDGWTSLHHALAEGHGDVAVLLVKLGADP-NIVNNDGETPVKV 235

Query:   182 AIDSSL 187
             A+D  +
Sbjct:   236 AVDDKV 241

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	238
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-19
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-17
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-16
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-13
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	9e-09
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	9e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-04
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	3e-04
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	4e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	9e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.001
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	0.002
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.002
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.002
PHA02791	284	PHA02791, PHA02791, ankyrin-like protein; Provisio	0.002
smart00248	30	smart00248, ANK, ankyrin repeats	0.003
PHA02741	169	PHA02741, PHA02741, hypothetical protein; Provisio	0.003
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 79.3 bits (196), Expect = 6e-19
 Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 14/130 (10%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G T LH+A    + +V+  +L     +  K+N  G TPLH+AA+ G   IV  +L+    
Sbjct: 7   GRTPLHLAASNGHLEVVKLLLENGADVNAKDN-DGRTPLHLAAKNGHLEIVKLLLEKGAD 65

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
           +               D +GNTPLH A RN + +VV++L+K         +   +TPL +
Sbjct: 66  V------------NARDKDGNTPLHLAARNGNLDVVKLLLKHGADV-NARDKDGRTPLHL 112

Query: 182 AIDSSLTDIA 191
           A  +   ++ 
Sbjct: 113 AAKNGHLEVV 122

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 75.5 bits (186), Expect = 2e-17
 Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 14/129 (10%)

Query: 93  NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 152
           +  G TPLH+AA  G   +V  +L+    +               D++G TPLH A +N 
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVN------------AKDNDGRTPLHLAAKNG 51

Query: 153 HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTL 212
           H  +V++L++K        +    TPL +A  +   D+   ++      +N R  +  T 
Sbjct: 52  HLEIVKLLLEKGADVN-ARDKDGNTPLHLAARNGNLDVVKLLLK-HGADVNARDKDGRTP 109

Query: 213 LHSAVMRQN 221
           LH A    +
Sbjct: 110 LHLAAKNGH 118

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 72.0 bits (177), Expect = 3e-16
 Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 13/101 (12%)

Query: 61  RGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAP 120
            G T LH+A +  + +++  +L +   +  ++   G TPLH+AAR G+  +V  +LK+  
Sbjct: 39  DGRTPLHLAAKNGHLEIVKLLLEKGADVNARDK-DGNTPLHLAARNGNLDVVKLLLKHGA 97

Query: 121 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV 161
            +               D +G TPLH A +N H  VV++L+
Sbjct: 98  DVN------------ARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 62.7 bits (153), Expect = 4e-13
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 15/99 (15%)

Query: 66  LHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNG 125
           LH+A +  N +++  +L +   +   +    +T LH+AAR G+  IV  +L++   +   
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT---DTALHLAARNGNLEIVKLLLEHGADVNA- 56

Query: 126 TESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKD 164
                       D +GNT LH A RN +  +V++L++  
Sbjct: 57  -----------KDKDGNTALHLAARNGNLEIVKLLLEHG 84

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 55.5 bits (134), Expect = 4e-10
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 2/87 (2%)

Query: 136 ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFII 195
             D++G TPLH A  N H  VV++L++         +N  +TPL +A  +   +I   ++
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVN-AKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 196 DQRPESLNHRLPEELTLLHSAVMRQNY 222
           ++    +N R  +  T LH A    N 
Sbjct: 61  EKGA-DVNARDKDGNTPLHLAARNGNL 86

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 51.1 bits (123), Expect = 9e-09
 Identities = 20/101 (19%), Positives = 43/101 (42%), Gaps = 15/101 (14%)

Query: 100 LHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRM 159
           LH+AA+ G+  +V  +L+    +  G                +T LH A RN +  +V++
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--------------DTALHLAARNGNLEIVKL 46

Query: 160 LVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPE 200
           L++     +   +    T L +A  +   +I   +++   +
Sbjct: 47  LLEHG-ADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGAD 86

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 39/148 (26%), Positives = 56/148 (37%), Gaps = 12/148 (8%)

Query: 61  RGNTVLHMAIRFR-NHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDP--AIVSTILK 117
            G T L  AI  + N   I E L    + +   N  GE  LH+          I+  ++ 
Sbjct: 105 NGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLID 164

Query: 118 YAPAITNGTESEPESLLR------ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYL 171
               I          LL       I D  G TPLH AV N +   V+ L+         +
Sbjct: 165 KGVDINAKNRVN--YLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDL-GANPNLV 221

Query: 172 NNAEQTPLSIAIDSSLTDIACFIIDQRP 199
           N    TPL IAI ++  +I   +++  P
Sbjct: 222 NKYGDTPLHIAILNNNKEIFKLLLNNGP 249

Length = 422

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 42.2 bits (100), Expect = 6e-06
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 12/64 (18%)

Query: 98  TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 157
           T LH AA  G   +V  +L+    I              TD++GNT LH A  N +  V+
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDIN------------RTDEDGNTALHIAAENGNLEVL 50

Query: 158 RMLV 161
           ++L+
Sbjct: 51  KLLL 54

Length = 54

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 45.2 bits (106), Expect = 9e-06
 Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 19/109 (17%)

Query: 62  GNTVLHMAIRFRNHK-----VIPEILRRRDSL--LRKNNWKGETPLHIAARVGDPAIVST 114
           G+T LH+A    N       V   +L     L      +  G TPLH AA  GD  IV  
Sbjct: 106 GDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVEL 165

Query: 115 ILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 163
           +L+                    +  G T L  A +N    +V++L+ K
Sbjct: 166 LLEAGADPN------------SRNSYGVTALDPAAKNGRIELVKLLLDK 202

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 44.8 bits (105), Expect = 1e-05
 Identities = 39/189 (20%), Positives = 65/189 (34%), Gaps = 21/189 (11%)

Query: 41  EHQISLIAGRMQNIFSTMSPRGNTV-LHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETP 99
           +  +  +   +    S  S +   + L +A+          +    D  L   +  G  P
Sbjct: 17  DLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLP 76

Query: 100 LHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN---- 155
           LH AA  GD  IV  +L               + +   D +G+TPLH A  N +      
Sbjct: 77  LHSAASKGDDKIVKLLL------------ASGADVNAKDADGDTPLHLAALNGNPPEGNI 124

Query: 156 -VVRMLVKK--DRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTL 212
            V ++L++   D       +    TPL  A  +   DI   +++      N R    +T 
Sbjct: 125 EVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLE-AGADPNSRNSYGVTA 183

Query: 213 LHSAVMRQN 221
           L  A     
Sbjct: 184 LDPAAKNGR 192

Length = 235

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 45.0 bits (106), Expect = 1e-05
 Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 16/123 (13%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G   +H+AI+     +I ++L  + +     +  GE+PLH AA  GD A +  ++ +   
Sbjct: 157 GCYPIHIAIKHNFFDII-KLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNH 215

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
           I N  ++            G TPLHNA+ + + + + +L+    I    ++ +  TPL  
Sbjct: 216 IMNKCKN------------GFTPLHNAIIH-NRSAIELLINNASINDQDIDGS--TPLHH 260

Query: 182 AID 184
           AI+
Sbjct: 261 AIN 263

Length = 434

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 63  NTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKY 118
           +T LH+A R  N +++ ++L    + +   +  G T LH+AAR G+  IV  +L++
Sbjct: 29  DTALHLAARNGNLEIV-KLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 133 LLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 182
            L  TD  GNTPLH A +     +V+ L+K   + L   ++   T L +A
Sbjct: 8   DLNATDGNGNTPLHLAAKYGALELVQWLLKP-GVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 4/78 (5%)

Query: 145 LHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNH 204
           LH A +N +  +V++L++K    +   +    T L +A  +   +I   +++     +N 
Sbjct: 1   LHLAAKNGNLELVKLLLEKG-ADVNLGDT--DTALHLAARNGNLEIVKLLLEHGA-DVNA 56

Query: 205 RLPEELTLLHSAVMRQNY 222
           +  +  T LH A    N 
Sbjct: 57  KDKDGNTALHLAARNGNL 74

Length = 91

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.9 bits (89), Expect = 1e-04
 Identities = 13/24 (54%), Positives = 18/24 (75%)

Query: 140 EGNTPLHNAVRNKHENVVRMLVKK 163
           +GNTPLH A RN H  VV++L++ 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEA 24

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 36/146 (24%), Positives = 54/146 (36%), Gaps = 28/146 (19%)

Query: 52  QNIFSTMSP--RGNTVLHMAIR---------FRNHKVIPEILRRRDSLLRKNNWKGETPL 100
           + I     P   G  +LH   R         F+N      I      L+ + N  G+  +
Sbjct: 5   EEIIFASEPDIEGENILHYLCRNGGVTDLLAFKN-----AISDENRYLVLEYNRHGKQCV 59

Query: 101 HIAARVG--DPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVR 158
           HI +     DP     +L    A  NG E             GNTPLH AV  ++  +  
Sbjct: 60  HIVSNPDKADPQEKLKLLMEWGADINGKERV----------FGNTPLHIAVYTQNYELAT 109

Query: 159 MLVKKDRIPLGYLNNAEQTPLSIAID 184
            L  +  + +  LN A +TP  +A +
Sbjct: 110 WLCNQPGVNMEILNYAFKTPYYVACE 135

Length = 154

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 12/66 (18%)

Query: 95  KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE 154
           KG TPLHIAA  G    V  +LK+A  +             I D  GNT L NA+  KH 
Sbjct: 557 KGRTPLHIAASKGYEDCVLVLLKHACNV------------HIRDANGNTALWNAISAKHH 604

Query: 155 NVVRML 160
            + R+L
Sbjct: 605 KIFRIL 610

Length = 823

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 36.4 bits (85), Expect = 6e-04
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTIL 116
           G T LH A      +++  +L +   + R +   G T LHIAA  G+  ++  +L
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDED-GNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 39.5 bits (92), Expect = 9e-04
 Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 16/122 (13%)

Query: 63  NTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIA-ARVGDPAIVSTILKYAPA 121
           N+ LH A++  N  ++  IL    +     +  G TPLHI+     D  I+  +L++   
Sbjct: 202 NSPLHHAVKHYNKPIV-HILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEH--- 257

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
              G +   +S +      G T LH+++++  E  +++L++        LN+ + TPLS 
Sbjct: 258 ---GVDVNAKSYIL-----GLTALHSSIKS--ERKLKLLLEYGADI-NSLNSYKLTPLSS 306

Query: 182 AI 183
           A+
Sbjct: 307 AV 308

Length = 477

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.2 bits (84), Expect = 0.001
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 12/68 (17%)

Query: 81  ILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDE 140
           +L      L   +  G TPLH+AA+ G   +V  +LK                L + D +
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKP------------GVDLNLRDSD 48

Query: 141 GNTPLHNA 148
           G T L  A
Sbjct: 49  GLTALDLA 56

Length = 56

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 38.8 bits (90), Expect = 0.002
 Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 24/140 (17%)

Query: 93  NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 152
           + + +T LH A + GD   +  + +Y   +             I DD G  P+H A+++ 
Sbjct: 121 DAELKTFLHYAIKKGDLESIKMLFEYGADVN------------IEDDNGCYPIHIAIKHN 168

Query: 153 HENVVRMLVKKDRIPLGYLN---NAEQTPLSIAIDSSLTDIAC--FIIDQRPESLNHRLP 207
             +++++L++K      Y N   N  ++PL  A +    D AC   +ID     +N +  
Sbjct: 169 FFDIIKLLLEKG----AYANVKDNNGESPLHNAAEYG--DYACIKLLIDHGNHIMN-KCK 221

Query: 208 EELTLLHSAVMRQNYGEPMI 227
              T LH+A++       ++
Sbjct: 222 NGFTPLHNAIIHNRSAIELL 241

Length = 434

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 38.8 bits (90), Expect = 0.002
 Identities = 39/188 (20%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 14  DYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFR 73
           D K P ++ EL     H+    +  GD   +  +    +         G T LH+A   +
Sbjct: 62  DVKYPDIESEL-----HD---AVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILK 113

Query: 74  NHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESL 133
              ++  ++ R       N  K  +PLH+A  +GD   +  ++ +            ++ 
Sbjct: 114 KLDIMKLLIARGADPDIPNTDK-FSPLHLAVMMGDIKGIELLIDH------------KAC 160

Query: 134 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACF 193
           L I D  G TPL  A+      + +ML+        +  N     L  AI+++  DI   
Sbjct: 161 LDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRL 220

Query: 194 IIDQRPES 201
            I +  + 
Sbjct: 221 FIKRGADC 228

Length = 413

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 12/68 (17%)

Query: 93  NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 152
           ++ G TPLHIA   G   +V  +L++    T            + D +G TPL  A  N 
Sbjct: 112 DYDGRTPLHIACANGHVQVVRVLLEFGADPT------------LLDKDGKTPLELAEENG 159

Query: 153 HENVVRML 160
              VV++L
Sbjct: 160 FREVVQLL 167

Length = 664

>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 15/142 (10%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G++ L+ AI   N +++  +L   ++   KN  + E PLH AA + D  IV  +L     
Sbjct: 30  GHSALYYAIADNNVRLVCTLL---NAGALKNLLENEFPLHQAATLEDTKIVKILL----- 81

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
            +   +S+        DD+GNT L+ AV + +   V++ VKK+   + Y     +T    
Sbjct: 82  FSGMDDSQ-------FDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYH 134

Query: 182 AIDSSLTDIACFIIDQRPESLN 203
           A+  +   I  + + + P + +
Sbjct: 135 AVMLNDVSIVSYFLSEIPSTFD 156

Length = 284

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 34.1 bits (79), Expect = 0.003
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 140 EGNTPLHNAVRNKHENVVRMLVKKD 164
           +G TPLH A  N +  VV++L+ K 
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKG 25

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional

 Score = 36.9 bits (85), Expect = 0.003
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 88  LLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHN 147
            L   +  G+  +HIAA   +  + + I+ +   I  G +   + +L     EG+T LH 
Sbjct: 52  ALNATDDAGQMCIHIAAEKHEAQLAAEIIDHL--IELGADINAQEML-----EGDTALHL 104

Query: 148 AVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDS 185
           A   +  ++   L  +  I L + N   ++P  +AID+
Sbjct: 105 AAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDN 142

Length = 169

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 37.1 bits (85), Expect = 0.004
 Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 16/141 (11%)

Query: 61  RGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDP-----AIVSTI 115
            G   LH A    + K++  +L     +  K+   G+TPLH+AA  G+P      +   +
Sbjct: 72  DGRLPLHSAASKGDDKIVKLLLASGADVNAKD-ADGDTPLHLAALNGNPPEGNIEVAKLL 130

Query: 116 LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE 175
           L+    +             + D++GNTPLH A  N   ++V +L++    P    N+  
Sbjct: 131 LEAGADLDV---------NNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSR-NSYG 180

Query: 176 QTPLSIAIDSSLTDIACFIID 196
            T L  A  +   ++   ++D
Sbjct: 181 VTALDPAAKNGRIELVKLLLD 201

Length = 235

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	238
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02795	437	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02859	209	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.97
KOG0508	615	consensus Ankyrin repeat protein [General function	99.97
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.97
PHA02795	437	ankyrin-like protein; Provisional	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.96
PHA02730	672	ankyrin-like protein; Provisional	99.96
PHA02730	672	ankyrin-like protein; Provisional	99.96
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.96
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.96
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.96
PHA02917	661	ankyrin-like protein; Provisional	99.95
PHA02792	631	ankyrin-like protein; Provisional	99.95
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.95
PHA02792	631	ankyrin-like protein; Provisional	99.95
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.94
KOG0514	452	consensus Ankyrin repeat protein [General function	99.94
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.93
PHA02743	166	Viral ankyrin protein; Provisional	99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
PHA02743	166	Viral ankyrin protein; Provisional	99.93
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.92
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.92
PHA02741	169	hypothetical protein; Provisional	99.92
PHA02736	154	Viral ankyrin protein; Provisional	99.92
PHA02884	300	ankyrin repeat protein; Provisional	99.91
PHA02741	169	hypothetical protein; Provisional	99.91
PHA02884	300	ankyrin repeat protein; Provisional	99.9
KOG0514	452	consensus Ankyrin repeat protein [General function	99.89
PHA02736	154	Viral ankyrin protein; Provisional	99.89
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.89
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.88
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.87
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.87
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.86
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.85
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.85
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.82
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.81
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.8
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.8
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.79
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.78
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.7
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.67
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.67
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.62
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.6
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.59
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.59
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.55
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.54
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.54
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.52
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.52
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.5
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.48
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.19
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.16
PF13606	30	Ank_3: Ankyrin repeat	99.09
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.05
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.96
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.96
PF13606	30	Ank_3: Ankyrin repeat	98.95
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.92
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.9
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.89
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.84
KOG0522	560	consensus Ankyrin repeat protein [General function	98.82
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.79
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.79
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.69
KOG0522	560	consensus Ankyrin repeat protein [General function	98.65
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.62
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.56
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.55
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.44
KOG2384	223	consensus Major histocompatibility complex protein	98.32
KOG0511	516	consensus Ankyrin repeat protein [General function	98.28
KOG0511	516	consensus Ankyrin repeat protein [General function	98.25
KOG2384	223	consensus Major histocompatibility complex protein	98.22
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.12
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.05
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.52
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	97.43
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	97.31
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.16
KOG2505	591	consensus Ankyrin repeat protein [General function	97.1
KOG2505	591	consensus Ankyrin repeat protein [General function	97.01
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.61
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.6
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	94.93
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	94.69

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-42  Score=229.32  Aligned_cols=193  Identities=21%  Similarity=0.255  Sum_probs=163.6

Q ss_pred             HHHHHHHcCCHHHHHHHHhhhhccccc-cCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCH
Q 026423           31 ELLNVLRRGDEHQISLIAGRMQNIFST-MSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDP  109 (238)
Q Consensus        31 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~  109 (238)
                      +.+.++......-++.+++....-++. .|.+|.|||||||..|+.+++.+|+++.+..++.+|..|+||||+|+..|+.
T Consensus         6 ~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~   85 (226)
T KOG4412|consen    6 LGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGND   85 (226)
T ss_pred             hHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcH
Confidence            466677777777888888877633244 4458999999999999999999999877788888888999999999999999


Q ss_pred             HHHHHHHhh-CccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcH
Q 026423          110 AIVSTILKY-APAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLT  188 (238)
Q Consensus       110 ~~~~~ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  188 (238)
                      ++|+.|+.+ +++            ++..+..|.|+||+|+..|..++.++|+++|+.+ ..+|..|+||||-|+.-|..
T Consensus        86 evVk~Ll~r~~ad------------vna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i-~~kD~~~qtplHRAAavGkl  152 (226)
T KOG4412|consen   86 EVVKELLNRSGAD------------VNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALI-RIKDKQGQTPLHRAAAVGKL  152 (226)
T ss_pred             HHHHHHhcCCCCC------------cceecCCCcceehhhhcCChhhHHHHHHhcCCCC-cccccccCchhHHHHhccch
Confidence            999999887 555            3467888999999999999999999999999877 78899999999999999999


Q ss_pred             HHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCC
Q 026423          189 DIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  237 (238)
Q Consensus       189 ~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~  237 (238)
                      +++++|+..| +.+|.+|+.|+||||.|..-++.+.+..|+++||++++
T Consensus       153 kvie~Li~~~-a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~  200 (226)
T KOG4412|consen  153 KVIEYLISQG-APLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDR  200 (226)
T ss_pred             hhHHHHHhcC-CCCCcccccCccHHHHHHhccCchHHHHHHHhccceee
Confidence            9999999988 88999999999999999888899999999999998875

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.5e-41  Score=249.16  Aligned_cols=212  Identities=14%  Similarity=0.110  Sum_probs=184.4

Q ss_pred             chhhhhhhccccCCCCCCCCCCCCCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHH
Q 026423            4 RSFEMTEFGTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILR   83 (238)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~   83 (238)
                      .+.+++++.++....    .....+.+|||+|+..|+.+++++|++.|+++ +..  +|.||||+|+..|+.+++++|+ 
T Consensus        10 ~~~~~~~~Lis~~a~----~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~-n~~--d~~TpLh~Aa~~g~~eiV~lLL-   81 (284)
T PHA02791         10 KSKQLKSFLSSKDAF----KADVHGHSALYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVKILL-   81 (284)
T ss_pred             CHHHHHHHHHhCCCC----CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCC-cCC--CCCCHHHHHHHCCCHHHHHHHH-
Confidence            456778887775432    23445677999999999999999999999988 544  4789999999999999999999 


Q ss_pred             cCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCC-CcHHHHHHHcCCHHHHHHHHH
Q 026423           84 RRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEG-NTPLHNAVRNKHENVVRMLVK  162 (238)
Q Consensus        84 ~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~ll~  162 (238)
                      ..+.+++.++..|+||||+|+..|+.+++++|+++|+++.            .++..| .||||+|+..|+.+++++|++
T Consensus        82 ~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin------------~~~~~g~~TpL~~Aa~~g~~eivk~LL~  149 (284)
T PHA02791         82 FSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM------------FYGKTGWKTSFYHAVMLNDVSIVSYFLS  149 (284)
T ss_pred             HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC------------ccCCCCCcHHHHHHHHcCCHHHHHHHHh
Confidence            5778889999999999999999999999999999997754            456666 489999999999999999999


Q ss_pred             cCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcH-HHHHHHhcCcchhHHhhhcccccCCC
Q 026423          163 KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTL-LHSAVMRQNYGEPMIFISLNKCLSIV  238 (238)
Q Consensus       163 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~-l~~A~~~~~~~~~~~L~~~g~~~~~~  238 (238)
                      +++....  ...|.||||+|+..|+.+++++|+++| ++++.+|..|.|| ||+|+..++.+++++|+++|++++.+
T Consensus       150 ~~~~~~d--~~~g~TpLh~Aa~~g~~eiv~lLL~~g-Ad~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~  223 (284)
T PHA02791        150 EIPSTFD--LAILLSCIHITIKNGHVDMMILLLDYM-TSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSV  223 (284)
T ss_pred             cCCcccc--cccCccHHHHHHHcCCHHHHHHHHHCC-CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccC
Confidence            8765421  135899999999999999999999999 9999999999977 99999999999999999999999864

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.9e-40  Score=218.75  Aligned_cols=187  Identities=22%  Similarity=0.249  Sum_probs=171.4

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHcCCHHHHHHHHh-hhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCC
Q 026423           17 EPTMDQELPTTMDHELLNVLRRGDEHQISLIAG-RMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWK   95 (238)
Q Consensus        17 ~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~   95 (238)
                      .++++..+...+.+|||+||..|..+++++|++ .+..+ +.+|..|+||||.|+..|+.++|+.|+.+.+.+++..+..
T Consensus        27 ~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~-ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~  105 (226)
T KOG4412|consen   27 PKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKP-DDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNG  105 (226)
T ss_pred             hhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCC-CCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCC
Confidence            356666677778889999999999999999995 56677 7889999999999999999999999998779999999999


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCC
Q 026423           96 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE  175 (238)
Q Consensus        96 g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g  175 (238)
                      |.|+||+|+..|+.+++++|+++|+.+.            .+|..|.||||.|+..|..+++++|+..|+.. +..|..|
T Consensus       106 G~T~LHyAagK~r~eIaqlLle~ga~i~------------~kD~~~qtplHRAAavGklkvie~Li~~~a~~-n~qDk~G  172 (226)
T KOG4412|consen  106 GQTCLHYAAGKGRLEIAQLLLEKGALIR------------IKDKQGQTPLHRAAAVGKLKVIEYLISQGAPL-NTQDKYG  172 (226)
T ss_pred             CcceehhhhcCChhhHHHHHHhcCCCCc------------ccccccCchhHHHHhccchhhHHHHHhcCCCC-CcccccC
Confidence            9999999999999999999999997765            79999999999999999999999999999777 8999999


Q ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHh
Q 026423          176 QTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMR  219 (238)
Q Consensus       176 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~  219 (238)
                      +||||.|.-.|+.++...|++.| ++.+..|+.| ||+..|.-.
T Consensus       173 ~TpL~~al~e~~~d~a~lLV~~g-Ad~~~edke~-t~~~~a~~~  214 (226)
T KOG4412|consen  173 FTPLHHALAEGHPDVAVLLVRAG-ADTDREDKEG-TALRIACNE  214 (226)
T ss_pred             ccHHHHHHhccCchHHHHHHHhc-cceeeccccC-chHHHHHHH
Confidence            99999998888999999999999 9999999988 998877543

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.8e-38  Score=252.07  Aligned_cols=213  Identities=17%  Similarity=0.136  Sum_probs=188.4

Q ss_pred             chhhhhhhc----cccCCCCCCCCCCCCCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHH
Q 026423            4 RSFEMTEFG----TDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIP   79 (238)
Q Consensus         4 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~   79 (238)
                      ++.+++++.    ++++...      ..+.+|||+|+..|+.+++++|+++|+++ +..+..+.||||.|+..|+.++++
T Consensus        13 g~~~iv~~Ll~~g~~~n~~~------~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~t~L~~A~~~g~~~~v~   85 (413)
T PHA02875         13 GELDIARRLLDIGINPNFEI------YDGISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYPDIESELHDAVEEGDVKAVE   85 (413)
T ss_pred             CCHHHHHHHHHCCCCCCccC------CCCCCHHHHHHHcCCHHHHHHHHhCCCCc-cccCCCcccHHHHHHHCCCHHHHH
Confidence            456666664    4444333      23555999999999999999999999998 777888999999999999999999


Q ss_pred             HHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHH
Q 026423           80 EILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRM  159 (238)
Q Consensus        80 ~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~  159 (238)
                      +|++.+....+..+..|.||||+|+..|+.+++++|+++|+++.            ..+..|.||||+|+..|+.+++++
T Consensus        86 ~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~------------~~~~~g~tpLh~A~~~~~~~~v~~  153 (413)
T PHA02875         86 ELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPD------------IPNTDKFSPLHLAVMMGDIKGIEL  153 (413)
T ss_pred             HHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC------------CCCCCCCCHHHHHHHcCCHHHHHH
Confidence            99976665556667789999999999999999999999998754            577889999999999999999999


Q ss_pred             HHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCC-CcHHHHHHHhcCcchhHHhhhcccccCC
Q 026423          160 LVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEE-LTLLHSAVMRQNYGEPMIFISLNKCLSI  237 (238)
Q Consensus       160 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g-~t~l~~A~~~~~~~~~~~L~~~g~~~~~  237 (238)
                      |+++|++. +..+..|.||||+|+..|+.+++++|++.| ++++..+..| .||+++|+..++.+++++|+++|+++++
T Consensus       154 Ll~~g~~~-~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~g-a~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~  230 (413)
T PHA02875        154 LIDHKACL-DIEDCCGCTPLIIAMAKGDIAICKMLLDSG-ANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI  230 (413)
T ss_pred             HHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCC-CCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcch
Confidence            99999987 788999999999999999999999999999 9999998887 4899999999999999999999999875

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.5e-37  Score=246.79  Aligned_cols=193  Identities=18%  Similarity=0.204  Sum_probs=179.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCH
Q 026423           30 HELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDP  109 (238)
Q Consensus        30 ~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~  109 (238)
                      ++|+.|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|+ ..+..++..+..+.||||.|+..|+.
T Consensus         4 ~~L~~A~~~g~~~iv~~Ll~~g~~~-n~~~~~g~tpL~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~~~t~L~~A~~~g~~   81 (413)
T PHA02875          4 VALCDAILFGELDIARRLLDIGINP-NFEIYDGISPIKLAMKFRDSEAIKLLM-KHGAIPDVKYPDIESELHDAVEEGDV   81 (413)
T ss_pred             hHHHHHHHhCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHH-hCCCCccccCCCcccHHHHHHHCCCH
Confidence            4799999999999999999999999 888889999999999999999999999 56667777888899999999999999


Q ss_pred             HHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHH
Q 026423          110 AIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTD  189 (238)
Q Consensus       110 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~  189 (238)
                      +++++|++.++....           ..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+
T Consensus        82 ~~v~~Ll~~~~~~~~-----------~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~-~~~~~~g~tpLh~A~~~~~~~  149 (413)
T PHA02875         82 KAVEELLDLGKFADD-----------VFYKDGMTPLHLATILKKLDIMKLLIARGADP-DIPNTDKFSPLHLAVMMGDIK  149 (413)
T ss_pred             HHHHHHHHcCCcccc-----------cccCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHH
Confidence            999999999865432           34567999999999999999999999999998 788999999999999999999


Q ss_pred             HHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCC
Q 026423          190 IACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  237 (238)
Q Consensus       190 ~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~  237 (238)
                      ++++|+++| ++++.+|..|.||||+|+..|+.+++++|+++|++++.
T Consensus       150 ~v~~Ll~~g-~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~  196 (413)
T PHA02875        150 GIELLIDHK-ACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDY  196 (413)
T ss_pred             HHHHHHhcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCc
Confidence            999999999 99999999999999999999999999999999999875

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.5e-36  Score=242.13  Aligned_cols=220  Identities=20%  Similarity=0.288  Sum_probs=163.1

Q ss_pred             chhhhhhhccccCCCCCCCCCCCCCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHH
Q 026423            4 RSFEMTEFGTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILR   83 (238)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~   83 (238)
                      ++.++++..+.-....++... ..+.+|||.|+..|+.++|++|+++|+++ +..+..|.||||.|+..|+.+++++|++
T Consensus        12 gd~~~v~~ll~~~~~~~n~~~-~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~-n~~~~~~~t~L~~A~~~~~~~iv~~Ll~   89 (434)
T PHA02874         12 GDIEAIEKIIKNKGNCINISV-DETTTPLIDAIRSGDAKIVELFIKHGADI-NHINTKIPHPLLTAIKIGAHDIIKLLID   89 (434)
T ss_pred             CCHHHHHHHHHcCCCCCCCcC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            456777776654444333332 34556899999999999999999999888 7778888889999998888888888885


Q ss_pred             cC----------------------ccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCC
Q 026423           84 RR----------------------DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEG  141 (238)
Q Consensus        84 ~~----------------------~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~  141 (238)
                      .+                      +.+++.++..|.||||+|+..|+.+++++|+++|+++.            ..+..|
T Consensus        90 ~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n------------~~d~~g  157 (434)
T PHA02874         90 NGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVN------------IEDDNG  157 (434)
T ss_pred             CCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCC------------CcCCCC
Confidence            32                      23456677788889999888888888888888887654            455666


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcC-----------------------
Q 026423          142 NTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQR-----------------------  198 (238)
Q Consensus       142 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~-----------------------  198 (238)
                      .||||+|+..++.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++.|                       
T Consensus       158 ~tpLh~A~~~~~~~iv~~Ll~~g~~~-n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~  236 (434)
T PHA02874        158 CYPIHIAIKHNFFDIIKLLLEKGAYA-NVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRS  236 (434)
T ss_pred             CCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChH
Confidence            77777777777777777777766665 556666777777777777777777776665                       


Q ss_pred             -------CcccccCCCCCCcHHHHHHHhc-CcchhHHhhhcccccCCC
Q 026423          199 -------PESLNHRLPEELTLLHSAVMRQ-NYGEPMIFISLNKCLSIV  238 (238)
Q Consensus       199 -------~~~~~~~~~~g~t~l~~A~~~~-~~~~~~~L~~~g~~~~~~  238 (238)
                             +++++.+|..|+||||+|+..+ +.+++++|+++|++++++
T Consensus       237 ~i~~Ll~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~  284 (434)
T PHA02874        237 AIELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIK  284 (434)
T ss_pred             HHHHHHcCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCC
Confidence                   1445667778888888888765 789999999999998863

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6e-37  Score=248.02  Aligned_cols=195  Identities=20%  Similarity=0.242  Sum_probs=176.4

Q ss_pred             CCCHHHHHHH--HcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcC--CcchHHHHHHcCccccccCCCCCCcHHHH
Q 026423           27 TMDHELLNVL--RRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFR--NHKVIPEILRRRDSLLRKNNWKGETPLHI  102 (238)
Q Consensus        27 ~~~~~l~~A~--~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~  102 (238)
                      .+.+|||+|+  ..|+.+++++|+++|+++ +..+..|.||||+|+..+  +.+++++|+ ..+.+++.++..|.||||+
T Consensus       105 ~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll-~~g~din~~d~~g~tpL~~  182 (480)
T PHA03100        105 NGITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKLLI-DKGVDINAKNRYGYTPLHI  182 (480)
T ss_pred             CCCchhhHHHhcccChHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHHHHHHH-HCCCCcccccCCCCCHHHH
Confidence            3455899999  899999999999999998 888889999999999999  899999999 5677788888899999999


Q ss_pred             HHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCC------CcHHHHHHHcCC--HHHHHHHHHcCCccccccCCC
Q 026423          103 AARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEG------NTPLHNAVRNKH--ENVVRMLVKKDRIPLGYLNNA  174 (238)
Q Consensus       103 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~a~~~~~--~~~~~~ll~~~~~~~~~~~~~  174 (238)
                      |+..|+.+++++|+++|+++.            ..+..+      .||||.|+..++  .+++++|++.|+++ +..+..
T Consensus       183 A~~~~~~~iv~~Ll~~ga~~~------------~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~di-n~~d~~  249 (480)
T PHA03100        183 AVEKGNIDVIKFLLDNGADIN------------AGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPI-NIKDVY  249 (480)
T ss_pred             HHHhCCHHHHHHHHHcCCCcc------------CCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCC-CCCCCC
Confidence            999999999999999987754            345566      899999999999  99999999999988 788999


Q ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCC
Q 026423          175 EQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  237 (238)
Q Consensus       175 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~  237 (238)
                      |.||||+|+..|+.+++++|++.| ++++.+|..|.||+++|+..++.+++++|+++|++++.
T Consensus       250 g~TpL~~A~~~~~~~iv~~Ll~~g-ad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~~  311 (480)
T PHA03100        250 GFTPLHYAVYNNNPEFVKYLLDLG-ANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKT  311 (480)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHHH
Confidence            999999999999999999999999 89999999999999999999999999999999998763

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.9e-36  Score=245.04  Aligned_cols=194  Identities=21%  Similarity=0.219  Sum_probs=173.1

Q ss_pred             CHHHHH-----HHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHH--HcCCcchHHHHHHcCccccccCCCCCCcHHH
Q 026423           29 DHELLN-----VLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAI--RFRNHKVIPEILRRRDSLLRKNNWKGETPLH  101 (238)
Q Consensus        29 ~~~l~~-----A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~--~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~  101 (238)
                      .+|||.     |+..|+.+++++|+++|+++ +..+..|.||||+|+  ..|+.+++++|+ ..+.+++..+..|.||||
T Consensus        69 ~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll-~~g~~~~~~~~~g~t~L~  146 (480)
T PHA03100         69 STPLHYLSNIKYNLTDVKEIVKLLLEYGANV-NAPDNNGITPLLYAISKKSNSYSIVEYLL-DNGANVNIKNSDGENLLH  146 (480)
T ss_pred             cCHHHHHHHHHHHhhchHHHHHHHHHCCCCC-CCCCCCCCchhhHHHhcccChHHHHHHHH-HcCCCCCccCCCCCcHHH
Confidence            447888     88888999999999988888 888888899999998  888889999888 567777888888889999


Q ss_pred             HHHHhC--CHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCC----
Q 026423          102 IAARVG--DPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----  175 (238)
Q Consensus       102 ~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g----  175 (238)
                      +|+..+  +.+++++|+++|+++.            ..+..|.||||+|+..|+.+++++|+++|+++ +..+..|    
T Consensus       147 ~A~~~~~~~~~iv~~Ll~~g~din------------~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~  213 (480)
T PHA03100        147 LYLESNKIDLKILKLLIDKGVDIN------------AKNRYGYTPLHIAVEKGNIDVIKFLLDNGADI-NAGDIETLLFT  213 (480)
T ss_pred             HHHHcCCChHHHHHHHHHCCCCcc------------cccCCCCCHHHHHHHhCCHHHHHHHHHcCCCc-cCCCCCCCcHH
Confidence            998888  8889999998887654            56779999999999999999999999999988 6777777    


Q ss_pred             --CCHHHHHHHcCc--HHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCCC
Q 026423          176 --QTPLSIAIDSSL--TDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV  238 (238)
Q Consensus       176 --~t~l~~a~~~~~--~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~~  238 (238)
                        .||+|.|+..|+  .+++++|++.| ++++.+|..|.||||+|+..++.+++++|+++|++++.+
T Consensus       214 ~~~t~l~~a~~~~~~~~~iv~~Ll~~g-~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~  279 (480)
T PHA03100        214 IFETPLHIAACYNEITLEVVNYLLSYG-VPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLV  279 (480)
T ss_pred             HHHhHHHHHHHhCcCcHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc
Confidence              899999999999  99999999999 999999999999999999999999999999999998763

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3e-36  Score=243.07  Aligned_cols=194  Identities=21%  Similarity=0.301  Sum_probs=165.9

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHH------------------------
Q 026423           28 MDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILR------------------------   83 (238)
Q Consensus        28 ~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~------------------------   83 (238)
                      ..+|||.|+..|+.++|++|+++|+++ +..+..|.||||+||..|+.+++++|+.                        
T Consensus        37 ~~tPLh~A~~~g~~e~vk~Ll~~gadv-n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~e  115 (477)
T PHA02878         37 PFIPLHQAVEARNLDVVKSLLTRGHNV-NQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVE  115 (477)
T ss_pred             CcchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHH
Confidence            445899999999999999999999999 8899999999999998776654444432                        


Q ss_pred             ---------------------------------------cCccccccCCCC-CCcHHHHHHHhCCHHHHHHHHhhCcccc
Q 026423           84 ---------------------------------------RRDSLLRKNNWK-GETPLHIAARVGDPAIVSTILKYAPAIT  123 (238)
Q Consensus        84 ---------------------------------------~~~~~~~~~~~~-g~~~l~~a~~~~~~~~~~~ll~~~~~~~  123 (238)
                                                             ..+++++..+.. |.||||+|+..|+.+++++|+++|+++.
T Consensus       116 i~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n  195 (477)
T PHA02878        116 IFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVN  195 (477)
T ss_pred             HHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCC
Confidence                                                   244556666767 9999999999999999999999987754


Q ss_pred             CCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHc-CcHHHHHHHHhcCCccc
Q 026423          124 NGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDS-SLTDIACFIIDQRPESL  202 (238)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~Ll~~~~~~~  202 (238)
                                  ..+..|.||||.|++.++.+++++|++.|+++ +..+..|.||||+|+.. ++.+++++|+++| +++
T Consensus       196 ------------~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~i-n~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~g-adv  261 (477)
T PHA02878        196 ------------IPDKTNNSPLHHAVKHYNKPIVHILLENGAST-DARDKCGNTPLHISVGYCKDYDILKLLLEHG-VDV  261 (477)
T ss_pred             ------------CcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhcCCHHHHHHHHHcC-CCC
Confidence                        57788999999999999999999999999988 78899999999999875 6899999999998 889


Q ss_pred             ccCCC-CCCcHHHHHHHhcCcchhHHhhhcccccCCC
Q 026423          203 NHRLP-EELTLLHSAVMRQNYGEPMIFISLNKCLSIV  238 (238)
Q Consensus       203 ~~~~~-~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~~  238 (238)
                      +.++. .|.||||+|  .++.+++++|+++|++++.+
T Consensus       262 n~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~  296 (477)
T PHA02878        262 NAKSYILGLTALHSS--IKSERKLKLLLEYGADINSL  296 (477)
T ss_pred             CccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCc
Confidence            88875 799999999  56788999999999998863

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.3e-36  Score=221.60  Aligned_cols=182  Identities=18%  Similarity=0.158  Sum_probs=163.6

Q ss_pred             CHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCC-cHHHHHHHhC
Q 026423           29 DHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGE-TPLHIAARVG  107 (238)
Q Consensus        29 ~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~-~~l~~a~~~~  107 (238)
                      .+|||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+ ..+.+++.++..|+ ||||+|+..|
T Consensus        62 ~TpLh~Aa~~g~~eiV~lLL~~Gadv-n~~d~~G~TpLh~Aa~~g~~eivk~Ll-~~gadin~~~~~g~~TpL~~Aa~~g  139 (284)
T PHA02791         62 EFPLHQAATLEDTKIVKILLFSGMDD-SQFDDKGNTALYYAVDSGNMQTVKLFV-KKNWRLMFYGKTGWKTSFYHAVMLN  139 (284)
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCcCccCCCCCcHHHHHHHHcC
Confidence            46999999999999999999999999 888999999999999999999999999 56777888888885 8999999999


Q ss_pred             CHHHHHHHHhhCccccCCCCCCCcccccccC-CCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCH-HHHHHHc
Q 026423          108 DPAIVSTILKYAPAITNGTESEPESLLRITD-DEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTP-LSIAIDS  185 (238)
Q Consensus       108 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~-l~~a~~~  185 (238)
                      +.+++++|+++++..              .+ ..|.||||+|+..|+.+++++|+++|+++ +..+..|.|| ||+|+..
T Consensus       140 ~~eivk~LL~~~~~~--------------~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~-n~~d~~g~t~~L~~Aa~~  204 (284)
T PHA02791        140 DVSIVSYFLSEIPST--------------FDLAILLSCIHITIKNGHVDMMILLLDYMTST-NTNNSLLFIPDIKLAIDN  204 (284)
T ss_pred             CHHHHHHHHhcCCcc--------------cccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CcccCCCCChHHHHHHHc
Confidence            999999999986432              22 25899999999999999999999999988 7888899987 9999999


Q ss_pred             CcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhccccc
Q 026423          186 SLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCL  235 (238)
Q Consensus       186 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~  235 (238)
                      |+.+++++|+++| ++++.+|..| +++      ++.|++++|+++-++.
T Consensus       205 ~~~e~v~lLl~~G-a~in~~~~~~-~~l------~~~e~~~~ll~~~~~~  246 (284)
T PHA02791        205 KDLEMLQALFKYD-INIYSVNLEN-VLL------DDAEIAKMIIEKHVEY  246 (284)
T ss_pred             CCHHHHHHHHHCC-CCCccCcccC-ccC------CCHHHHHHHHHhhhhh
Confidence            9999999999999 9999999854 555      7899999999987664

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.6e-35  Score=238.05  Aligned_cols=203  Identities=20%  Similarity=0.138  Sum_probs=132.6

Q ss_pred             HHHHHHHHcC-CHHHHHHHHhhhhccccccCCCCchHHHHHH--HcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHh
Q 026423           30 HELLNVLRRG-DEHQISLIAGRMQNIFSTMSPRGNTVLHMAI--RFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARV  106 (238)
Q Consensus        30 ~~l~~A~~~~-~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~--~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~  106 (238)
                      ||||+|+..| ..+++++|+++|+++ +..+..|.||||+|+  ..++.+++++|+ +.+.+++.++..|.||||+|+..
T Consensus        85 TpLh~A~~~~~~~~iv~lLl~~ga~i-n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll-~~gad~~~~d~~g~tpL~~a~~~  162 (471)
T PHA03095         85 TPLHLYLYNATTLDVIKLLIKAGADV-NAKDKVGRTPLHVYLSGFNINPKVIRLLL-RKGADVNALDLYGMTPLAVLLKS  162 (471)
T ss_pred             CHHHHHHHcCCcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhCCcCCHHHHHHHH-HcCCCCCccCCCCCCHHHHHHHc
Confidence            3566666666 366666666666666 556666666666666  334556666666 34555566666666666666554


Q ss_pred             C--CHHHHHHHHhhCccccCCCCCCC-----------------------cccccccCCCCCcHHHHHHHcCCH--HHHHH
Q 026423          107 G--DPAIVSTILKYAPAITNGTESEP-----------------------ESLLRITDDEGNTPLHNAVRNKHE--NVVRM  159 (238)
Q Consensus       107 ~--~~~~~~~ll~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~l~~a~~~~~~--~~~~~  159 (238)
                      +  ..+++++|+++|+++......+.                       ...++.++..|.||||+|+..+..  .+++.
T Consensus       163 ~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~  242 (471)
T PHA03095        163 RNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLP  242 (471)
T ss_pred             CCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHH
Confidence            4  45666666666655443321110                       222345666777777777776653  46667


Q ss_pred             HHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccC
Q 026423          160 LVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLS  236 (238)
Q Consensus       160 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~  236 (238)
                      |+..|+++ +..+..|+||||+|+..|+.+++++|++.| ++++.+|..|.|||++|+..++.++++.|++.|++++
T Consensus       243 ll~~g~di-n~~d~~g~TpLh~A~~~~~~~~v~~LL~~g-ad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~  317 (471)
T PHA03095        243 LLIAGISI-NARNRYGQTPLHYAAVFNNPRACRRLIALG-ADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAE  317 (471)
T ss_pred             HHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHH
Confidence            77777766 667777888888888877888888888777 7777777788888888888888888888887777653

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=3e-35  Score=237.64  Aligned_cols=208  Identities=19%  Similarity=0.169  Sum_probs=180.1

Q ss_pred             CCCHHHHHHHHcC---CHHHHHHHHhhhhccccccCCCCchHHHHHHHcC-CcchHHHHHHcCccccccCCCCCCcHHHH
Q 026423           27 TMDHELLNVLRRG---DEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFR-NHKVIPEILRRRDSLLRKNNWKGETPLHI  102 (238)
Q Consensus        27 ~~~~~l~~A~~~~---~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~-~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~  102 (238)
                      .+.||||.|+..+   +.+++++|++.|+++ +..+..|.||||+|+..+ +.+++++|+ ..+.+++.++..|.||||+
T Consensus        46 ~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadi-n~~~~~g~TpLh~A~~~~~~~~iv~lLl-~~ga~in~~~~~g~tpLh~  123 (471)
T PHA03095         46 YGKTPLHLYLHYSSEKVKDIVRLLLEAGADV-NAPERCGFTPLHLYLYNATTLDVIKLLI-KAGADVNAKDKVGRTPLHV  123 (471)
T ss_pred             CCCCHHHHHHHhcCCChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCcHHHHHHHH-HcCCCCCCCCCCCCCHHHH
Confidence            3455899999999   999999999999999 888999999999999999 599999999 6788899999999999999


Q ss_pred             HH--HhCCHHHHHHHHhhCccccCCCCCCC-----------------------cccccccCCCCCcHHHHHHHc--CCHH
Q 026423          103 AA--RVGDPAIVSTILKYAPAITNGTESEP-----------------------ESLLRITDDEGNTPLHNAVRN--KHEN  155 (238)
Q Consensus       103 a~--~~~~~~~~~~ll~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~l~~a~~~--~~~~  155 (238)
                      |+  ..++.+++++|+++|+++......+.                       ...++..+..|.||||+++..  +..+
T Consensus       124 a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~  203 (471)
T PHA03095        124 YLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRAR  203 (471)
T ss_pred             HhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHH
Confidence            99  45688999999999988765433321                       112334577889999988764  6788


Q ss_pred             HHHHHHHcCCccccccCCCCCCHHHHHHHcCcH--HHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhccc
Q 026423          156 VVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLT--DIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNK  233 (238)
Q Consensus       156 ~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~--~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~  233 (238)
                      +++.|++.|+++ +..|..|.||||+|+..|..  .+++.|++.| ++++.+|..|+||||+|+..|+.+++++|+++|+
T Consensus       204 i~~~Ll~~g~~~-~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g-~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~ga  281 (471)
T PHA03095        204 IVRELIRAGCDP-AATDMLGNTPLHSMATGSSCKRSLVLPLLIAG-ISINARNRYGQTPLHYAAVFNNPRACRRLIALGA  281 (471)
T ss_pred             HHHHHHHcCCCC-cccCCCCCCHHHHHHhcCCchHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            999999999988 78899999999999998864  6888899888 9999999999999999999999999999999999


Q ss_pred             ccCCC
Q 026423          234 CLSIV  238 (238)
Q Consensus       234 ~~~~~  238 (238)
                      +++++
T Consensus       282 d~n~~  286 (471)
T PHA03095        282 DINAV  286 (471)
T ss_pred             CCccc
Confidence            99863

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=3.4e-35  Score=233.20  Aligned_cols=202  Identities=13%  Similarity=0.126  Sum_probs=165.3

Q ss_pred             hhccccCCCCCCCCCCCCCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCC--cchHHHHHHcCcc
Q 026423           10 EFGTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRN--HKVIPEILRRRDS   87 (238)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~--~~~~~~Ll~~~~~   87 (238)
                      +.|++++..+..      +.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..++  .+++++|+ ..++
T Consensus        60 ~~Gadvn~~d~~------G~TpLh~Aa~~g~~eiv~lLL~~GAdi-n~~d~~g~TpLh~A~~~~~~~~e~v~lLl-~~Ga  131 (446)
T PHA02946         60 HRGYSPNETDDD------GNYPLHIASKINNNRIVAMLLTHGADP-NACDKQHKTPLYYLSGTDDEVIERINLLV-QYGA  131 (446)
T ss_pred             HCcCCCCccCCC------CCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCchHHHHHHHH-HcCC
Confidence            345555554433      444888888888888888888888888 7888888888888877653  67788888 4555


Q ss_pred             ccc-cCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcC--CHHHHHHHHHcC
Q 026423           88 LLR-KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK--HENVVRMLVKKD  164 (238)
Q Consensus        88 ~~~-~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~  164 (238)
                      +++ ..+..|.|||+ |+..++.+++++|++.|+++.            ..+..|+||||+|+..+  +.+++++|++.|
T Consensus       132 din~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~------------~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~G  198 (446)
T PHA02946        132 KINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEAR------------IVDKFGKNHIHRHLMSDNPKASTISWMMKLG  198 (446)
T ss_pred             CcccccCCCCCcHHH-HHHCCChHHHHHHHhcccccc------------ccCCCCCCHHHHHHHhcCCCHHHHHHHHHcC
Confidence            665 46778888887 566688888888888886654            68889999999987654  478999999999


Q ss_pred             CccccccCCCCCCHHHHHHHcC--cHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCc-chhHHhhhccccc
Q 026423          165 RIPLGYLNNAEQTPLSIAIDSS--LTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNY-GEPMIFISLNKCL  235 (238)
Q Consensus       165 ~~~~~~~~~~g~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~-~~~~~L~~~g~~~  235 (238)
                      +++ +..|..|.||||+|+..+  +.+++++|+. + ++++.+|..|.||||+|+..++. +++++|+++|+++
T Consensus       199 adi-n~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-g-adin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~  269 (446)
T PHA02946        199 ISP-SKPDHDGNTPLHIVCSKTVKNVDIINLLLP-S-TDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVI  269 (446)
T ss_pred             CCC-cccCCCCCCHHHHHHHcCCCcHHHHHHHHc-C-CCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCC
Confidence            998 788999999999999876  7899999985 6 99999999999999999999884 8999999998764

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1e-34  Score=231.66  Aligned_cols=204  Identities=20%  Similarity=0.192  Sum_probs=182.1

Q ss_pred             HHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHH
Q 026423           31 ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPA  110 (238)
Q Consensus        31 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~  110 (238)
                      .|..|+..|+.+.++.|++.+....+..+..|.||||.|+..|+.+++++|+ ..+.+++..+..|.||||.|+..|+.+
T Consensus         4 ~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll-~~Ga~~n~~~~~~~t~L~~A~~~~~~~   82 (434)
T PHA02874          4 DLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFI-KHGADINHINTKIPHPLLTAIKIGAHD   82 (434)
T ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            6899999999999999998766544777889999999999999999999999 577788899999999999999999999


Q ss_pred             HHHHHHhhCccccCCCCCC-----------CcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHH
Q 026423          111 IVSTILKYAPAITNGTESE-----------PESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPL  179 (238)
Q Consensus       111 ~~~~ll~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l  179 (238)
                      ++++|+++|++........           ....++..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.|||
T Consensus        83 iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~~g~tpL  161 (434)
T PHA02874         83 IIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYPI  161 (434)
T ss_pred             HHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcCCCCCCHH
Confidence            9999999987643211100           12345667889999999999999999999999999998 78899999999


Q ss_pred             HHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCC
Q 026423          180 SIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  237 (238)
Q Consensus       180 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~  237 (238)
                      |+|+..|+.+++++|++.| ++++..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus       162 h~A~~~~~~~iv~~Ll~~g-~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~  218 (434)
T PHA02874        162 HIAIKHNFFDIIKLLLEKG-AYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMN  218 (434)
T ss_pred             HHHHHCCcHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcC
Confidence            9999999999999999999 99999999999999999999999999999999998764

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=2.4e-35  Score=229.52  Aligned_cols=192  Identities=23%  Similarity=0.242  Sum_probs=175.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHhh-hhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCC-CCCCcHHHHHHHhC
Q 026423           30 HELLNVLRRGDEHQISLIAGR-MQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNN-WKGETPLHIAARVG  107 (238)
Q Consensus        30 ~~l~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~~~l~~a~~~~  107 (238)
                      ..++.|++.|+++.|+.|++. |.++ +..|.+|.|+||||+.+++.+++++|+ .+++++|... ..+.||||+|+++|
T Consensus        46 ~~~v~A~q~G~l~~v~~lve~~g~~v-~~~D~~g~tlLHWAAiNNrl~v~r~li-~~gadvn~~gG~l~stPLHWAar~G  123 (600)
T KOG0509|consen   46 DDIVKATQYGELETVKELVESEGESV-NNPDREGVTLLHWAAINNRLDVARYLI-SHGADVNAIGGVLGSTPLHWAARNG  123 (600)
T ss_pred             hhhhhHhhcchHHHHHHHHhhcCcCC-CCCCcCCccceeHHHHcCcHHHHHHHH-HcCCCccccCCCCCCCcchHHHHcC
Confidence            358999999999999999998 8888 888999999999999999999999999 5777777777 77889999999999


Q ss_pred             CHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCc
Q 026423          108 DPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSL  187 (238)
Q Consensus       108 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  187 (238)
                      +..++++|+++|++++            .+|..|.+|+|.|++.++.-.+-+++.+++++ +.+|.+|+||||+|+.+|.
T Consensus       124 ~~~vv~lLlqhGAdpt------------~~D~~G~~~lHla~~~~~~~~vayll~~~~d~-d~~D~~grTpLmwAaykg~  190 (600)
T KOG0509|consen  124 HISVVDLLLQHGADPT------------LKDKQGLTPLHLAAQFGHTALVAYLLSKGADI-DLRDNNGRTPLMWAAYKGF  190 (600)
T ss_pred             cHHHHHHHHHcCCCCc------------eecCCCCcHHHHHHHhCchHHHHHHHHhcccC-CCcCCCCCCHHHHHHHhcc
Confidence            9999999999999876            68999999999999999999999999999887 8999999999999999999


Q ss_pred             HHHHHHHHhcCCcccccCC-CCCCcHHHHHHHhcCcchhHHhhhcccccCC
Q 026423          188 TDIACFIIDQRPESLNHRL-PEELTLLHSAVMRQNYGEPMIFISLNKCLSI  237 (238)
Q Consensus       188 ~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~  237 (238)
                      ...++.|++.+ +.+...| ..|.||||+|+..|+..++..|++-|++.+.
T Consensus       191 ~~~v~~LL~f~-a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~  240 (600)
T KOG0509|consen  191 ALFVRRLLKFG-ASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDK  240 (600)
T ss_pred             cHHHHHHHHhc-ccccccccccCCchHHHHHhcCCcceEehhhhcCCcccc
Confidence            88799999999 8888887 8999999999999999999977777777653

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=2.9e-35  Score=234.06  Aligned_cols=211  Identities=22%  Similarity=0.293  Sum_probs=169.8

Q ss_pred             hhhhhhccccCCCCCCCCCCCCCCHHHHHHHHcCCHHHHHHHHh-----hhhccccccCCCCchHHHHHHHcCCcchHHH
Q 026423            6 FEMTEFGTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAG-----RMQNIFSTMSPRGNTVLHMAIRFRNHKVIPE   80 (238)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~-----~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~   80 (238)
                      .+++++|+++..++.+...      |+|.|+++|..++++..+.     ++..+ +..+..+.+|||.|+..|++++++.
T Consensus       171 k~Li~~~a~~~K~~~~~~~------~iH~aa~s~s~e~mEi~l~~~g~~r~~~i-n~~~n~~~~pLhlAve~g~~e~lk~  243 (929)
T KOG0510|consen  171 KELINKGADPCKSDIDGNF------PIHEAARSGSKECMEIFLPEHGYERQTHI-NFDNNEKATPLHLAVEGGDIEMLKM  243 (929)
T ss_pred             HHHHhcCCCCCcccCcCCc------hHHHHHHhcchhhhhhhhccccchhhccc-ccccCCCCcchhhhhhcCCHHHHHH
Confidence            3556777777766655544      6888888888888888887     55666 6777788888888888888888888


Q ss_pred             HHHcCccc--------------cccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHH
Q 026423           81 ILRRRDSL--------------LRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLH  146 (238)
Q Consensus        81 Ll~~~~~~--------------~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  146 (238)
                      +|+.....              ++..|.+|.||||+|++.|+.++++.|+..|++++            .++.++.||||
T Consensus       244 ~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~------------~kn~d~~spLH  311 (929)
T KOG0510|consen  244 CLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASIN------------SKNKDEESPLH  311 (929)
T ss_pred             HHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCccc------------ccCCCCCCchH
Confidence            88643322              33457788888888888888888888888888866            57788889999


Q ss_pred             HHHHcCCHHHHHHHHH-cCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccc---cCCCCCCcHHHHHHHhcCc
Q 026423          147 NAVRNKHENVVRMLVK-KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLN---HRLPEELTLLHSAVMRQNY  222 (238)
Q Consensus       147 ~a~~~~~~~~~~~ll~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~---~~~~~g~t~l~~A~~~~~~  222 (238)
                      .|+++|+.++++-|++ .+--..+..|..|+||||+|++.|+..+++.|+..| +...   ..|..|.||||.|++.|+.
T Consensus       312 ~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~G-A~~~~~~e~D~dg~TaLH~Aa~~g~~  390 (929)
T KOG0510|consen  312 FAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKG-ALFLNMSEADSDGNTALHLAAKYGNT  390 (929)
T ss_pred             HHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcC-hhhhcccccccCCchhhhHHHHhccH
Confidence            9999999999988888 555556777888999999999999999999999998 5544   4589999999999999999


Q ss_pred             chhHHhhhcccccC
Q 026423          223 GEPMIFISLNKCLS  236 (238)
Q Consensus       223 ~~~~~L~~~g~~~~  236 (238)
                      .+++.|+++|+++.
T Consensus       391 ~av~~Li~~Ga~I~  404 (929)
T KOG0510|consen  391 SAVQKLISHGADIG  404 (929)
T ss_pred             HHHHHHHHcCCcee
Confidence            99999999999984

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.8e-34  Score=233.22  Aligned_cols=207  Identities=13%  Similarity=0.128  Sum_probs=174.8

Q ss_pred             hhccccCCCCCCCCCCCCCCHHHHHHHHc-----CCHHHHHHHHhhhhccccccCCCCchHHHHHHHcC---CcchHHHH
Q 026423           10 EFGTDYKEPTMDQELPTTMDHELLNVLRR-----GDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFR---NHKVIPEI   81 (238)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~l~~A~~~-----~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~---~~~~~~~L   81 (238)
                      +.|++++..+.      .+.||||.|+..     +..+++++|+++|+++ +..+..|.||||+|+..+   +.+++++|
T Consensus        59 ~~Gadvn~~d~------~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gadi-N~~d~~G~TpLh~a~~~~~~~~~~iv~~L  131 (489)
T PHA02798         59 NLGANVNGLDN------EYSTPLCTILSNIKDYKHMLDIVKILIENGADI-NKKNSDGETPLYCLLSNGYINNLEILLFM  131 (489)
T ss_pred             HCCCCCCCCCC------CCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCC-CCCCCCcCcHHHHHHHcCCcChHHHHHHH
Confidence            34566555443      344589998864     6789999999999999 899999999999999875   67999999


Q ss_pred             HHcCccccccCCCCCCcHHHHHHHhCC---HHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHc----CCH
Q 026423           82 LRRRDSLLRKNNWKGETPLHIAARVGD---PAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRN----KHE  154 (238)
Q Consensus        82 l~~~~~~~~~~~~~g~~~l~~a~~~~~---~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~----~~~  154 (238)
                      + ..|++++.++..|.||||+|+..++   .+++++|+++|+++...           .+..+.||||.++..    ++.
T Consensus       132 l-~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~-----------~~~~~~t~Lh~~~~~~~~~~~~  199 (489)
T PHA02798        132 I-ENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTH-----------NNKEKYDTLHCYFKYNIDRIDA  199 (489)
T ss_pred             H-HcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccc-----------cCcCCCcHHHHHHHhccccCCH
Confidence            9 5788899999999999999999988   99999999999876521           234678888887654    467


Q ss_pred             HHHHHHHHcCCcc--------------------------------------ccccCCCCCCHHHHHHHcCcHHHHHHHHh
Q 026423          155 NVVRMLVKKDRIP--------------------------------------LGYLNNAEQTPLSIAIDSSLTDIACFIID  196 (238)
Q Consensus       155 ~~~~~ll~~~~~~--------------------------------------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  196 (238)
                      +++++|+++|+++                                      ++.+|..|.||||+|+..|+.+++++|++
T Consensus       200 ~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~  279 (489)
T PHA02798        200 DILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQ  279 (489)
T ss_pred             HHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHH
Confidence            8888888777543                                      13466789999999999999999999999


Q ss_pred             cCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccC
Q 026423          197 QRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLS  236 (238)
Q Consensus       197 ~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~  236 (238)
                      .| ++++.+|..|.|||+.|+..++.++++.|+++|++++
T Consensus       280 ~G-Adin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~  318 (489)
T PHA02798        280 LG-GDINIITELGNTCLFTAFENESKFIFNSILNKKPNKN  318 (489)
T ss_pred             cC-CcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHH
Confidence            99 9999999999999999999999999999999999875

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.2e-33  Score=231.73  Aligned_cols=197  Identities=19%  Similarity=0.180  Sum_probs=156.4

Q ss_pred             CCCHHHHHHHHcCC--HHHHHHHHhhhhccccccCCCCchHHHHH-----------------------------------
Q 026423           27 TMDHELLNVLRRGD--EHQISLIAGRMQNIFSTMSPRGNTVLHMA-----------------------------------   69 (238)
Q Consensus        27 ~~~~~l~~A~~~~~--~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a-----------------------------------   69 (238)
                      .+.||||+|+..|+  .++|++|+++|+++ +..+..|.||||+|                                   
T Consensus       211 ~G~TPLH~Aa~~g~~~~eIVklLLe~GADV-N~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i  289 (764)
T PHA02716        211 HLITPLHTYLITGNVCASVIKKIIELGGDM-DMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYI  289 (764)
T ss_pred             CCCCHHHHHHHcCCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHH
Confidence            34558999999885  48899999999998 88888899999865                                   


Q ss_pred             --HHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHH--hCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHH
Q 026423           70 --IRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAAR--VGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL  145 (238)
Q Consensus        70 --~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~--~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  145 (238)
                        +..|+.+++++|+ +.+++++.++..|+||||+|+.  .++.+++++|+++|+++.            .++..|+|||
T Consensus       290 ~AA~~g~leiVklLL-e~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN------------~kD~~G~TPL  356 (764)
T PHA02716        290 TLARNIDISVVYSFL-QPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLN------------EPDNIGNTVL  356 (764)
T ss_pred             HHHHcCCHHHHHHHH-hCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCc------------cCCCCCCCHH
Confidence              3346677888888 5677788888899999998764  457889999999887754            6788999999


Q ss_pred             HHHHH--------------cCCHHHHHHHHHcCCccccccCCCCCCHHHH----HHHcCcHHHHHHHHhcCC--------
Q 026423          146 HNAVR--------------NKHENVVRMLVKKDRIPLGYLNNAEQTPLSI----AIDSSLTDIACFIIDQRP--------  199 (238)
Q Consensus       146 ~~a~~--------------~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~----a~~~~~~~~~~~Ll~~~~--------  199 (238)
                      |+|+.              .++.+++++|+++|+++ +..+..|.||||.    |...++.+++++|++.+.        
T Consensus       357 H~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADI-n~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~  435 (764)
T PHA02716        357 HTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADI-TAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRI  435 (764)
T ss_pred             HHHHHhhhhhccccccccccChHHHHHHHHHCCCCC-CCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhh
Confidence            99865              36789999999999988 7889999999983    223467888888877531        


Q ss_pred             ----------------------------------------------------cccccCCCCCCcHHHHHHHhcCcchh--
Q 026423          200 ----------------------------------------------------ESLNHRLPEELTLLHSAVMRQNYGEP--  225 (238)
Q Consensus       200 ----------------------------------------------------~~~~~~~~~g~t~l~~A~~~~~~~~~--  225 (238)
                                                                          .+++..|..|+||||+|+..|+.+++  
T Consensus       436 ~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~  515 (764)
T PHA02716        436 LQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVM  515 (764)
T ss_pred             hhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhH
Confidence                                                                11244577899999999999887555  


Q ss_pred             ---HHhhhcccccCCC
Q 026423          226 ---MIFISLNKCLSIV  238 (238)
Q Consensus       226 ---~~L~~~g~~~~~~  238 (238)
                         ++|+++|++++++
T Consensus       516 e~~k~LL~~GADIN~~  531 (764)
T PHA02716        516 DSFVYLLSIQYNINIP  531 (764)
T ss_pred             HHHHHHHhCCCCCccc
Confidence               9999999999864

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=9.6e-34  Score=232.34  Aligned_cols=214  Identities=17%  Similarity=0.108  Sum_probs=172.5

Q ss_pred             hhhhhhhccccCCCCCCCCCCCCCCHHHHHHHHc--CCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCc--chHHH
Q 026423            5 SFEMTEFGTDYKEPTMDQELPTTMDHELLNVLRR--GDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNH--KVIPE   80 (238)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~--~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~--~~~~~   80 (238)
                      ..+++++.++....+++......+.+|||.|+..  ++.+++++|+++|+++ +..+..|.||||+|+..|+.  +++++
T Consensus       154 ~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADV-N~kD~~G~TPLH~Aa~~g~~~~eIVkl  232 (764)
T PHA02716        154 DLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNV-NLQNNHLITPLHTYLITGNVCASVIKK  232 (764)
T ss_pred             CHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCCCHHHHHH
Confidence            4567777665542344443245567799998754  6789999999999999 88999999999999999965  89999


Q ss_pred             HHHcCccccccCCCCCCcHHHHHH-------------------------------------HhCCHHHHHHHHhhCcccc
Q 026423           81 ILRRRDSLLRKNNWKGETPLHIAA-------------------------------------RVGDPAIVSTILKYAPAIT  123 (238)
Q Consensus        81 Ll~~~~~~~~~~~~~g~~~l~~a~-------------------------------------~~~~~~~~~~ll~~~~~~~  123 (238)
                      |+ ..|++++.++..|.||||.|+                                     ..|+.+++++|+++|+++ 
T Consensus       233 LL-e~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdI-  310 (764)
T PHA02716        233 II-ELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKL-  310 (764)
T ss_pred             HH-HcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCce-
Confidence            99 678899999999999999764                                     335556666666666553 


Q ss_pred             CCCCCCCcccccccCCCCCcHHHHHHH--cCCHHHHHHHHHcCCccccccCCCCCCHHHHHHH--------------cCc
Q 026423          124 NGTESEPESLLRITDDEGNTPLHNAVR--NKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAID--------------SSL  187 (238)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~l~~a~~--~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~--------------~~~  187 (238)
                                 +.++..|+||||+|+.  .++.+++++|++.|+++ +..|..|+||||+|+.              .++
T Consensus       311 -----------N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADI-N~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~  378 (764)
T PHA02716        311 -----------HYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDL-NEPDNIGNTVLHTYLSMLSVVNILDPETDNDIR  378 (764)
T ss_pred             -----------eccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCC-ccCCCCCCCHHHHHHHhhhhhccccccccccCh
Confidence                       4688899999999764  46789999999999988 7889999999998865              368


Q ss_pred             HHHHHHHHhcCCcccccCCCCCCcHHHHH----HHhcCcchhHHhhhcccc
Q 026423          188 TDIACFIIDQRPESLNHRLPEELTLLHSA----VMRQNYGEPMIFISLNKC  234 (238)
Q Consensus       188 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A----~~~~~~~~~~~L~~~g~~  234 (238)
                      .+++++|+++| ++++.+|..|+||||.|    ...++.+++++|++.|+.
T Consensus       379 ~eVVklLL~~G-ADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~  428 (764)
T PHA02716        379 LDVIQCLISLG-ADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVL  428 (764)
T ss_pred             HHHHHHHHHCC-CCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcch
Confidence            89999999998 99999999999999942    334678999999998764

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.7e-33  Score=227.83  Aligned_cols=193  Identities=17%  Similarity=0.171  Sum_probs=143.2

Q ss_pred             CHHHHHHHHcC------CHHHHHHHHhhhhccccccCCCCchHHHHHHHc---CCcchHHHHHHcCcccc-ccCCCCCCc
Q 026423           29 DHELLNVLRRG------DEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRF---RNHKVIPEILRRRDSLL-RKNNWKGET   98 (238)
Q Consensus        29 ~~~l~~A~~~~------~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~---~~~~~~~~Ll~~~~~~~-~~~~~~g~~   98 (238)
                      .+|||.|+..+      ..+++++|+++|+++ +..+..|.||||.|+..   ++.+++++|+ +.|+++ +.++..|.|
T Consensus        70 ~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll-~~Gadin~~~d~~g~t  147 (494)
T PHA02989         70 ETPLCAVLRNREITSNKIKKIVKLLLKFGADI-NLKTFNGVSPIVCFIYNSNINNCDMLRFLL-SKGINVNDVKNSRGYN  147 (494)
T ss_pred             CCcHHHHHhccCcchhhHHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHhcccCcHHHHHHHH-HCCCCcccccCCCCCC
Confidence            44788776654      356788888888887 77778888888877654   5677888888 456666 677778888


Q ss_pred             HHHHHHHh--CCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcC----CHHHHHHHHHcCCccc----
Q 026423           99 PLHIAARV--GDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK----HENVVRMLVKKDRIPL----  168 (238)
Q Consensus        99 ~l~~a~~~--~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~----~~~~~~~ll~~~~~~~----  168 (238)
                      |||+|+..  ++.+++++|+++|+++..           ..+..|.||||.|++.+    +.+++++|++.|+++.    
T Consensus       148 pLh~a~~~~~~~~~iv~~Ll~~Gadi~~-----------~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~  216 (494)
T PHA02989        148 LLHMYLESFSVKKDVIKILLSFGVNLFE-----------KTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNN  216 (494)
T ss_pred             HHHHHHHhccCCHHHHHHHHHcCCCccc-----------cccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCC
Confidence            88887654  567888888888876542           13456777777776543    6777777777766541    


Q ss_pred             ---------------------------------cccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHH
Q 026423          169 ---------------------------------GYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHS  215 (238)
Q Consensus       169 ---------------------------------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~  215 (238)
                                                       +.+|..|+||||+|+..|+.+++++|++.| ++++.+|..|.||||+
T Consensus       217 ~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~G-adin~~d~~G~TpL~~  295 (494)
T PHA02989        217 GSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLG-DDIYNVSKDGDTVLTY  295 (494)
T ss_pred             ccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcC-CCccccCCCCCCHHHH
Confidence                                             334556888888888888888888888888 8888888888888888


Q ss_pred             HHHhcCcchhHHhhhccccc
Q 026423          216 AVMRQNYGEPMIFISLNKCL  235 (238)
Q Consensus       216 A~~~~~~~~~~~L~~~g~~~  235 (238)
                      |+..++.++++.|++.++..
T Consensus       296 A~~~~~~~iv~~LL~~~p~~  315 (494)
T PHA02989        296 AIKHGNIDMLNRILQLKPGK  315 (494)
T ss_pred             HHHcCCHHHHHHHHhcCCCh
Confidence            88888888888888877644

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.8e-33  Score=223.40  Aligned_cols=192  Identities=17%  Similarity=0.182  Sum_probs=170.0

Q ss_pred             CHHHHHHHH--cCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHh
Q 026423           29 DHELLNVLR--RGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARV  106 (238)
Q Consensus        29 ~~~l~~A~~--~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~  106 (238)
                      .++||.++.  ..+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+ ..+++++.+|..|.||||+|+..
T Consensus        38 ~~~Lh~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~G~TpLh~Aa~~g~~eiv~lLL-~~GAdin~~d~~g~TpLh~A~~~  115 (446)
T PHA02946         38 YHILHAYCGIKGLDERFVEELLHRGYSP-NETDDDGNYPLHIASKINNNRIVAMLL-THGADPNACDKQHKTPLYYLSGT  115 (446)
T ss_pred             ChHHHHHHHhcCCCHHHHHHHHHCcCCC-CccCCCCCCHHHHHHHcCCHHHHHHHH-HCcCCCCCCCCCCCCHHHHHHHc
Confidence            457887764  44778999999999999 899999999999999999999999999 57788999999999999999886


Q ss_pred             C--CHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHH
Q 026423          107 G--DPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAID  184 (238)
Q Consensus       107 ~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~  184 (238)
                      +  ..+++++|+++|+++..           ..+..|.|||| |+..++.+++++|++.|++. +..+..|+||||+|+.
T Consensus       116 ~~~~~e~v~lLl~~Gadin~-----------~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~-~~~d~~G~t~Lh~A~~  182 (446)
T PHA02946        116 DDEVIERINLLVQYGAKINN-----------SVDEEGCGPLL-ACTDPSERVFKKIMSIGFEA-RIVDKFGKNHIHRHLM  182 (446)
T ss_pred             CCchHHHHHHHHHcCCCccc-----------ccCCCCCcHHH-HHHCCChHHHHHHHhccccc-cccCCCCCCHHHHHHH
Confidence            5  48999999999988653           35778999997 77779999999999999988 7899999999999887


Q ss_pred             cC--cHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhc--CcchhHHhhhcccccCC
Q 026423          185 SS--LTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQ--NYGEPMIFISLNKCLSI  237 (238)
Q Consensus       185 ~~--~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~--~~~~~~~L~~~g~~~~~  237 (238)
                      .+  +.+++++|++.| ++++.+|..|+||||+|+..+  +.+++++|++ |++++.
T Consensus       183 ~~~~~~~~v~~Ll~~G-adin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~  237 (446)
T PHA02946        183 SDNPKASTISWMMKLG-ISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNK  237 (446)
T ss_pred             hcCCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCC
Confidence            54  468999999999 999999999999999999986  7789999985 898875

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=2.2e-34  Score=224.24  Aligned_cols=199  Identities=21%  Similarity=0.189  Sum_probs=172.5

Q ss_pred             hhhhhhhccccCCCCCCCCCCCCCCHHHHHHHHcCCHHHHHHHHhhhhccccccC-CCCchHHHHHHHcCCcchHHHHHH
Q 026423            5 SFEMTEFGTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMS-PRGNTVLHMAIRFRNHKVIPEILR   83 (238)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~a~~~~~~~~~~~Ll~   83 (238)
                      .+|-++..++....+.+..+. ++.++||+|+.+++.+++++|+++|+++ +..+ .-+.||||||+++|+..++..|+ 
T Consensus        56 ~l~~v~~lve~~g~~v~~~D~-~g~tlLHWAAiNNrl~v~r~li~~gadv-n~~gG~l~stPLHWAar~G~~~vv~lLl-  132 (600)
T KOG0509|consen   56 ELETVKELVESEGESVNNPDR-EGVTLLHWAAINNRLDVARYLISHGADV-NAIGGVLGSTPLHWAARNGHISVVDLLL-  132 (600)
T ss_pred             hHHHHHHHHhhcCcCCCCCCc-CCccceeHHHHcCcHHHHHHHHHcCCCc-cccCCCCCCCcchHHHHcCcHHHHHHHH-
Confidence            345555555554333333333 5666899999999999999999999999 5555 78999999999999999999999 


Q ss_pred             cCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 026423           84 RRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK  163 (238)
Q Consensus        84 ~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~  163 (238)
                      ++|++++.+|..|.+|+|.|++.++.-.+-+++.++++++            .+|..|.|||++|+.+|....++.|++-
T Consensus       133 qhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d------------~~D~~grTpLmwAaykg~~~~v~~LL~f  200 (600)
T KOG0509|consen  133 QHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADID------------LRDNNGRTPLMWAAYKGFALFVRRLLKF  200 (600)
T ss_pred             HcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCC------------CcCCCCCCHHHHHHHhcccHHHHHHHHh
Confidence            7999999999999999999999999999999999996654            7999999999999999999889999999


Q ss_pred             CCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHh
Q 026423          164 DRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMR  219 (238)
Q Consensus       164 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~  219 (238)
                      |+......+..|.||||+|+..|+..++. |+..|+++.+.+|.+|.||+++|..+
T Consensus       201 ~a~~~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  201 GASLLLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cccccccccccCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence            99985455599999999999999999999 55555599999999999999999877

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.4e-33  Score=234.15  Aligned_cols=205  Identities=19%  Similarity=0.198  Sum_probs=149.7

Q ss_pred             hccccCCCCCCCCCCCCCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHc------
Q 026423           11 FGTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRR------   84 (238)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~------   84 (238)
                      .|++++..+.      .+.||||+|+..|+.++|++|+++|+++ +..+..|.||||+|+..++.+++++|++.      
T Consensus       167 ~Gadvn~~d~------~G~TpLh~Aa~~G~~~iv~~LL~~Gad~-n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~  239 (682)
T PHA02876        167 GGADVNAKDI------YCITPIHYAAERGNAKMVNLLLSYGADV-NIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINK  239 (682)
T ss_pred             CCCCCCCCCC------CCCCHHHHHHHCCCHHHHHHHHHCCCCc-CccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC
Confidence            3555554433      3455899999999999999999999998 88888899999999999988888877643      


Q ss_pred             ----------------------CccccccCCCCCCcHHHHHHHhCCH-HHHHHHHhhCccccCCCCCCCcccccccCCCC
Q 026423           85 ----------------------RDSLLRKNNWKGETPLHIAARVGDP-AIVSTILKYAPAITNGTESEPESLLRITDDEG  141 (238)
Q Consensus        85 ----------------------~~~~~~~~~~~g~~~l~~a~~~~~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~  141 (238)
                                            .+.+++..+..|.||||+|+..++. +++++|++.|+++.            ..+..|
T Consensus       240 ~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin------------~~d~~g  307 (682)
T PHA02876        240 NDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVN------------AKNIKG  307 (682)
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCC------------CcCCCC
Confidence                                  2334566777889999999998885 58888888887754            455667


Q ss_pred             CcHHHHHHHcC-CHHHHHHHHHcCCccccccCCCCCCHHHHHHHc-CcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHh
Q 026423          142 NTPLHNAVRNK-HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDS-SLTDIACFIIDQRPESLNHRLPEELTLLHSAVMR  219 (238)
Q Consensus       142 ~~~l~~a~~~~-~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~  219 (238)
                      .||||+|+..| ..+++++|+..|+++ +..+..|.||||+|+.. +..+++++|++.| ++++.+|..|.||||+|+.+
T Consensus       308 ~TpLh~Aa~~g~~~~~v~~Ll~~gadi-n~~d~~g~TpLh~A~~~~~~~~iv~lLl~~g-adin~~d~~G~TpLh~Aa~~  385 (682)
T PHA02876        308 ETPLYLMAKNGYDTENIRTLIMLGADV-NAADRLYITPLHQASTLDRNKDIVITLLELG-ANVNARDYCDKTPIHYAAVR  385 (682)
T ss_pred             CCHHHHHHHhCCCHHHHHHHHHcCCCC-CCcccCCCcHHHHHHHhCCcHHHHHHHHHcC-CCCccCCCCCCCHHHHHHHc
Confidence            77777777666 466667777766666 56666666777766654 3566666666666 66666666677777777776


Q ss_pred             cCcchhHHhhhcccccC
Q 026423          220 QNYGEPMIFISLNKCLS  236 (238)
Q Consensus       220 ~~~~~~~~L~~~g~~~~  236 (238)
                      ++.+++++|+++|++++
T Consensus       386 ~~~~iv~~Ll~~gad~~  402 (682)
T PHA02876        386 NNVVIINTLLDYGADIE  402 (682)
T ss_pred             CCHHHHHHHHHCCCCcc
Confidence            66666666666666654

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3e-33  Score=225.67  Aligned_cols=172  Identities=22%  Similarity=0.234  Sum_probs=151.2

Q ss_pred             HHHHHHhhhhccccccCCC-CchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCcc
Q 026423           43 QISLIAGRMQNIFSTMSPR-GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA  121 (238)
Q Consensus        43 ~v~~Ll~~~~~~~~~~~~~-g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~  121 (238)
                      ++++|+++|+++ +..+.. |.||||+|+..|+.+++++|+ ..+++++..+..|.||||.|+..++.+++++|+++|++
T Consensus       149 iv~~Ll~~gadi-n~~~~~~g~tpLh~A~~~~~~~iv~~Ll-~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~  226 (477)
T PHA02878        149 ITKLLLSYGADI-NMKDRHKGNTALHYATENKDQRLTELLL-SYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAS  226 (477)
T ss_pred             HHHHHHHcCCCC-CccCCCCCCCHHHHHHhCCCHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            555666667777 666777 999999999999999999999 57788899999999999999999999999999999987


Q ss_pred             ccCCCCCCCcccccccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCccccccCC-CCCCHHHHHHHcCcHHHHHHHHhcCC
Q 026423          122 ITNGTESEPESLLRITDDEGNTPLHNAVRN-KHENVVRMLVKKDRIPLGYLNN-AEQTPLSIAIDSSLTDIACFIIDQRP  199 (238)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~-~~~~~~~~ll~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~~~  199 (238)
                      +.            .++..|.||||+|+.. ++.+++++|+++|+++ +..+. .|.||||+|  .++.+++++|++.| 
T Consensus       227 in------------~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadv-n~~~~~~g~TpLh~A--~~~~~~v~~Ll~~g-  290 (477)
T PHA02878        227 TD------------ARDKCGNTPLHISVGYCKDYDILKLLLEHGVDV-NAKSYILGLTALHSS--IKSERKLKLLLEYG-  290 (477)
T ss_pred             CC------------CCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCC-CccCCCCCCCHHHHH--ccCHHHHHHHHHCC-
Confidence            55            6788999999999975 7899999999999998 55554 899999999  46789999999999 


Q ss_pred             cccccCCCCCCcHHHHHHHhc-CcchhHHhhhcc
Q 026423          200 ESLNHRLPEELTLLHSAVMRQ-NYGEPMIFISLN  232 (238)
Q Consensus       200 ~~~~~~~~~g~t~l~~A~~~~-~~~~~~~L~~~g  232 (238)
                      ++++..|..|.|||++|+..+ ..+++++|++++
T Consensus       291 adin~~d~~g~TpL~~A~~~~~~~~~~~~li~~~  324 (477)
T PHA02878        291 ADINSLNSYKLTPLSSAVKQYLCINIGRILISNI  324 (477)
T ss_pred             CCCCCcCCCCCCHHHHHHHHcCccchHHHHHHHH
Confidence            999999999999999999754 568888888764

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.3e-33  Score=232.56  Aligned_cols=195  Identities=16%  Similarity=0.171  Sum_probs=164.9

Q ss_pred             CCHHHHHHHHcCCH-HHHHHHHhhhhccccccCCCCchHHHHHHHcC-CcchHHHHHHcCccccccCCCCCCcHHHHHHH
Q 026423           28 MDHELLNVLRRGDE-HQISLIAGRMQNIFSTMSPRGNTVLHMAIRFR-NHKVIPEILRRRDSLLRKNNWKGETPLHIAAR  105 (238)
Q Consensus        28 ~~~~l~~A~~~~~~-~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~-~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~  105 (238)
                      +.+|||+|+..++. +++++|++.|+++ +..+..|.||||+|+..| +.++++.|+ ..+.+++..+..|.||||+|+.
T Consensus       273 g~TpLh~Aa~~~~~~~iv~lLl~~gadi-n~~d~~g~TpLh~Aa~~g~~~~~v~~Ll-~~gadin~~d~~g~TpLh~A~~  350 (682)
T PHA02876        273 KNTPLHHASQAPSLSRLVPKLLERGADV-NAKNIKGETPLYLMAKNGYDTENIRTLI-MLGADVNAADRLYITPLHQAST  350 (682)
T ss_pred             CCCHHHHHHhCCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCCHHHHHHHH-HcCCCCCCcccCCCcHHHHHHH
Confidence            45588888888886 4888888888888 778888888888888888 477888887 5777788888888888888887


Q ss_pred             h-CCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHH
Q 026423          106 V-GDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAID  184 (238)
Q Consensus       106 ~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~  184 (238)
                      . +..+++++|++.|+++.            .++..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+.
T Consensus       351 ~~~~~~iv~lLl~~gadin------------~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~-~~~~~~g~T~Lh~A~~  417 (682)
T PHA02876        351 LDRNKDIVITLLELGANVN------------ARDYCDKTPIHYAAVRNNVVIINTLLDYGADI-EALSQKIGTALHFALC  417 (682)
T ss_pred             hCCcHHHHHHHHHcCCCCc------------cCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-cccCCCCCchHHHHHH
Confidence            5 46788888888887654            67889999999999999999999999999988 6788889999999987


Q ss_pred             cCc-HHHHHHHHhcCCcccccCCCCCCcHHHHHHHhc-CcchhHHhhhcccccCCC
Q 026423          185 SSL-TDIACFIIDQRPESLNHRLPEELTLLHSAVMRQ-NYGEPMIFISLNKCLSIV  238 (238)
Q Consensus       185 ~~~-~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~-~~~~~~~L~~~g~~~~~~  238 (238)
                      .+. ..++++|++.| ++++.+|..|+||||+|+..+ +.+++++|+++|++++.+
T Consensus       418 ~~~~~~~vk~Ll~~g-adin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~  472 (682)
T PHA02876        418 GTNPYMSVKTLIDRG-ANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAI  472 (682)
T ss_pred             cCCHHHHHHHHHhCC-CCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCC
Confidence            655 56789999988 999999999999999999876 679999999999998753

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=6.6e-34  Score=226.43  Aligned_cols=204  Identities=20%  Similarity=0.213  Sum_probs=154.9

Q ss_pred             HHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHc----CccccccCCCCCCcHHHHHHHh
Q 026423           31 ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRR----RDSLLRKNNWKGETPLHIAARV  106 (238)
Q Consensus        31 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~----~~~~~~~~~~~g~~~l~~a~~~  106 (238)
                      |||.|+..++.+..+.|++.|+++ ...+.+|++|+|.|+++|..++.+.++.+    ....++..+..+.+|||.|+..
T Consensus       157 pLh~A~~~~~~E~~k~Li~~~a~~-~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~  235 (929)
T KOG0510|consen  157 PLHLAARKNKVEAKKELINKGADP-CKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEG  235 (929)
T ss_pred             hhhHHHhcChHHHHHHHHhcCCCC-CcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhc
Confidence            566666666666556666666666 55566666666666666666666666642    2234555556666666666666


Q ss_pred             CCHHHHHHHHhhCccccCCC---CCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHH
Q 026423          107 GDPAIVSTILKYAPAITNGT---ESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAI  183 (238)
Q Consensus       107 ~~~~~~~~ll~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~  183 (238)
                      |+.++++.+++++..+....   ..+.+.+++..|.+|.||||+|++.|+.+.++.|+..|+++ +.++.++.||||.|+
T Consensus       236 g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I-~~kn~d~~spLH~AA  314 (929)
T KOG0510|consen  236 GDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASI-NSKNKDEESPLHFAA  314 (929)
T ss_pred             CCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcc-cccCCCCCCchHHHH
Confidence            66666666666654432221   22236678889999999999999999999999999999999 889999999999999


Q ss_pred             HcCcHHHHHHHHh-cCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccC
Q 026423          184 DSSLTDIACFIID-QRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLS  236 (238)
Q Consensus       184 ~~~~~~~~~~Ll~-~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~  236 (238)
                      .+|+.++++.|++ .+-..++..|-.|.||||+|++.|+..+++.|++.||...
T Consensus       315 ~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~  368 (929)
T KOG0510|consen  315 IYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFL  368 (929)
T ss_pred             HcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhh
Confidence            9999999999998 5555678888999999999999999999999999999764

>PHA02795 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.2e-33  Score=215.08  Aligned_cols=191  Identities=12%  Similarity=0.055  Sum_probs=169.7

Q ss_pred             HHHHcCCHHHHHHHHhhhhcccc------ccCCCCchHHHHHHH--cCCcchHHHHHHcCccccccCCCCCCcHHHHHHH
Q 026423           34 NVLRRGDEHQISLIAGRMQNIFS------TMSPRGNTVLHMAIR--FRNHKVIPEILRRRDSLLRKNNWKGETPLHIAAR  105 (238)
Q Consensus        34 ~A~~~~~~~~v~~Ll~~~~~~~~------~~~~~g~t~L~~a~~--~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~  105 (238)
                      .|+..+..+++++|+++|.++ +      .++..++|+||.++.  .|+.+++++|+ .+|++++..  .+.||+|.|+.
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~-~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI-~~GADIn~~--~~~t~lh~A~~  158 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYME-DIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMV-DHGAVIYKI--ECLNAYFRGIC  158 (437)
T ss_pred             HHhhcchHHHHHHHHhccccc-chhhhhhhccccccHHHHHHHHhcCCCHHHHHHHH-HCCCCCCCC--CCCCHHHHHHH
Confidence            889999999999999999997 5      677889999999999  89999999999 688888774  45899999999


Q ss_pred             hCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHc
Q 026423          106 VGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDS  185 (238)
Q Consensus       106 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~  185 (238)
                      .++.+++++|+++|++..+..      ..+..+..+.+++|.|...++.+++++|+++|+++ +.++..|.||||+|+..
T Consensus       159 ~~~~eIVk~Lls~Ga~~~n~~------~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADI-N~kD~~G~TpLh~Aa~~  231 (437)
T PHA02795        159 KKESSVVEFILNCGIPDENDV------KLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDI-NQLDAGGRTLLYRAIYA  231 (437)
T ss_pred             cCcHHHHHHHHhcCCcccccc------cchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCc-CcCCCCCCCHHHHHHHc
Confidence            999999999999997543211      01122345779999999999999999999999998 88999999999999999


Q ss_pred             CcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcC--------cchhHHhhhcccccC
Q 026423          186 SLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQN--------YGEPMIFISLNKCLS  236 (238)
Q Consensus       186 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~--------~~~~~~L~~~g~~~~  236 (238)
                      |+.+++++|+++| ++++.+|..|+||||+|+.+|+        .+++++|+++|++++
T Consensus       232 g~~eiVelLL~~G-AdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~  289 (437)
T PHA02795        232 GYIDLVSWLLENG-ANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSID  289 (437)
T ss_pred             CCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCC
Confidence            9999999999999 9999999999999999999985        589999999999886

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.4e-32  Score=222.46  Aligned_cols=209  Identities=15%  Similarity=0.198  Sum_probs=170.0

Q ss_pred             hhhhccccCCCCCCCCCCCCCCHHHHHHHHc--CCHHHHHHHHhhhhccccccCCCCchHHHHHHHcC------CcchHH
Q 026423            8 MTEFGTDYKEPTMDQELPTTMDHELLNVLRR--GDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFR------NHKVIP   79 (238)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~--~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~------~~~~~~   79 (238)
                      +++.|++++.. .      .+.++|+.++..  ++.++|++|+++|+++ +..+ .+.||||.|+..+      +.++++
T Consensus        22 LL~~GadvN~~-~------~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdv-n~~~-~~~tpL~~a~~~~~~~~~~~~~iv~   92 (494)
T PHA02989         22 LLRTGFDVNEE-Y------RGNSILLLYLKRKDVKIKIVKLLIDNGADV-NYKG-YIETPLCAVLRNREITSNKIKKIVK   92 (494)
T ss_pred             HHHcCCCcccc-c------CCCCHHHHHHhcCCCChHHHHHHHHcCCCc-cCCC-CCCCcHHHHHhccCcchhhHHHHHH
Confidence            34556766654 1      233367665544  3689999999999999 6655 5789999998754      457999


Q ss_pred             HHHHcCccccccCCCCCCcHHHHHHHh---CCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHc--CCH
Q 026423           80 EILRRRDSLLRKNNWKGETPLHIAARV---GDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRN--KHE  154 (238)
Q Consensus        80 ~Ll~~~~~~~~~~~~~g~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~--~~~  154 (238)
                      +|+ ..|++++.++..|.||||.|+..   ++.+++++|+++|+++.           +..+..|.||||+|+..  ++.
T Consensus        93 ~Ll-~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin-----------~~~d~~g~tpLh~a~~~~~~~~  160 (494)
T PHA02989         93 LLL-KFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVN-----------DVKNSRGYNLLHMYLESFSVKK  160 (494)
T ss_pred             HHH-HCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcc-----------cccCCCCCCHHHHHHHhccCCH
Confidence            999 67888999999999999988765   67999999999998862           15788999999998754  689


Q ss_pred             HHHHHHHHcCCccccccCCCCCCHHHHHHHcC----cHHHHHHHHhcCCccc----------------------------
Q 026423          155 NVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSS----LTDIACFIIDQRPESL----------------------------  202 (238)
Q Consensus       155 ~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~----~~~~~~~Ll~~~~~~~----------------------------  202 (238)
                      +++++|+++|+++....+..|.||+|+|++.+    +.+++++|++.| +++                            
T Consensus       161 ~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~G-a~vn~~~~~~~t~l~~~~~~~~~~~~~~~~i  239 (494)
T PHA02989        161 DVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKG-VNIETNNNGSESVLESFLDNNKILSKKEFKV  239 (494)
T ss_pred             HHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCC-CCccccCCccccHHHHHHHhchhhcccchHH
Confidence            99999999999984336789999999987754    889999999987 554                            


Q ss_pred             ----------ccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCCC
Q 026423          203 ----------NHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV  238 (238)
Q Consensus       203 ----------~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~~  238 (238)
                                +.+|..|+||||+|+..++.+++++|+++|++++.+
T Consensus       240 l~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~  285 (494)
T PHA02989        240 LNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNV  285 (494)
T ss_pred             HHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCcccc
Confidence                      445667999999999999999999999999999863

>PHA02859 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.6e-32  Score=195.09  Aligned_cols=175  Identities=14%  Similarity=0.120  Sum_probs=153.6

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcC--CcchHHHHHHcCccccccCC-CCCCcHHHHH
Q 026423           27 TMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFR--NHKVIPEILRRRDSLLRKNN-WKGETPLHIA  103 (238)
Q Consensus        27 ~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~--~~~~~~~Ll~~~~~~~~~~~-~~g~~~l~~a  103 (238)
                      ...+||+.|+..|+.+.|+.|++.   + +..+..|.||||+|+..+  +.+++++|+ +.+++++.++ ..|.||||+|
T Consensus        20 ~~~~pL~~A~~~~~~~~vk~Li~~---~-n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll-~~gadvn~~~~~~g~TpLh~a   94 (209)
T PHA02859         20 RYCNPLFYYVEKDDIEGVKKWIKF---V-NDCNDLYETPIFSCLEKDKVNVEILKFLI-ENGADVNFKTRDNNLSALHHY   94 (209)
T ss_pred             ccCcHHHHHHHhCcHHHHHHHHHh---h-hccCccCCCHHHHHHHcCCCCHHHHHHHH-HCCCCCCccCCCCCCCHHHHH
Confidence            345689999999999999999975   3 456889999999999854  899999999 5777888886 4899999998


Q ss_pred             HHh---CCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHH--cCCHHHHHHHHHcCCccccccCCCCCCH
Q 026423          104 ARV---GDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR--NKHENVVRMLVKKDRIPLGYLNNAEQTP  178 (238)
Q Consensus       104 ~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~--~~~~~~~~~ll~~~~~~~~~~~~~g~t~  178 (238)
                      +..   ++.+++++|+++|+++.            .++..|.||||+|+.  .++.+++++|++.|+++ +.+|..|.||
T Consensus        95 ~~~~~~~~~eiv~~Ll~~gadin------------~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadi-n~~d~~g~t~  161 (209)
T PHA02859         95 LSFNKNVEPEILKILIDSGSSIT------------EEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSF-LNKDFDNNNI  161 (209)
T ss_pred             HHhCccccHHHHHHHHHCCCCCC------------CcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCc-ccccCCCCcH
Confidence            764   47999999999998865            688899999999876  46899999999999998 7889999999


Q ss_pred             HHH-HHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhc
Q 026423          179 LSI-AIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQ  220 (238)
Q Consensus       179 l~~-a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~  220 (238)
                      ||. |+..++.+++++|++.| ++++.+|..|.||+++|..++
T Consensus       162 Lh~~a~~~~~~~iv~~Ll~~G-adi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        162 LYSYILFHSDKKIFDFLTSLG-IDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHhhhh
Confidence            995 56788999999999999 999999999999999998764

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.1e-32  Score=218.92  Aligned_cols=195  Identities=17%  Similarity=0.178  Sum_probs=167.3

Q ss_pred             HHHHHHHHc--CCHHHHHHHHhhhhccccccCCCCchHHHHHHHc-----CCcchHHHHHHcCccccccCCCCCCcHHHH
Q 026423           30 HELLNVLRR--GDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRF-----RNHKVIPEILRRRDSLLRKNNWKGETPLHI  102 (238)
Q Consensus        30 ~~l~~A~~~--~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~-----~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~  102 (238)
                      ++++.+...  ++.++|++|+++|+++ +..+..|.||||.|+..     ++.+++++|+ ..|++++.++..|.||||+
T Consensus        38 ~~~~~yl~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll-~~GadiN~~d~~G~TpLh~  115 (489)
T PHA02798         38 SIFQKYLQRDSPSTDIVKLFINLGANV-NGLDNEYSTPLCTILSNIKDYKHMLDIVKILI-ENGADINKKNSDGETPLYC  115 (489)
T ss_pred             hHHHHHHhCCCCCHHHHHHHHHCCCCC-CCCCCCCCChHHHHHHhHHhHHhHHHHHHHHH-HCCCCCCCCCCCcCcHHHH
Confidence            355544444  4789999999999999 88999999999998864     6689999999 6788899999999999999


Q ss_pred             HHHhC---CHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCC---HHHHHHHHHcCCccccccCCCCC
Q 026423          103 AARVG---DPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH---ENVVRMLVKKDRIPLGYLNNAEQ  176 (238)
Q Consensus       103 a~~~~---~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~ll~~~~~~~~~~~~~g~  176 (238)
                      |+..+   +.+++++|+++|+++.            ..+..|.||||+|++.++   .+++++|++.|+++....+..|.
T Consensus       116 a~~~~~~~~~~iv~~Ll~~Gadvn------------~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~  183 (489)
T PHA02798        116 LLSNGYINNLEILLFMIENGADTT------------LLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKY  183 (489)
T ss_pred             HHHcCCcChHHHHHHHHHcCCCcc------------ccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCC
Confidence            99875   7899999999998865            688899999999999988   99999999999998333356799


Q ss_pred             CHHHHHHHc----CcHHHHHHHHhcCC--------------------------------------cccccCCCCCCcHHH
Q 026423          177 TPLSIAIDS----SLTDIACFIIDQRP--------------------------------------ESLNHRLPEELTLLH  214 (238)
Q Consensus       177 t~l~~a~~~----~~~~~~~~Ll~~~~--------------------------------------~~~~~~~~~g~t~l~  214 (238)
                      ||+|.+++.    ++.+++++|+++|.                                      +++|.+|..|+||||
T Consensus       184 t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~  263 (489)
T PHA02798        184 DTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLY  263 (489)
T ss_pred             cHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHH
Confidence            999988764    47889999887761                                      245567788999999


Q ss_pred             HHHHhcCcchhHHhhhcccccCCC
Q 026423          215 SAVMRQNYGEPMIFISLNKCLSIV  238 (238)
Q Consensus       215 ~A~~~~~~~~~~~L~~~g~~~~~~  238 (238)
                      +|+..++.+++++|+++|+|++++
T Consensus       264 ~A~~~~~~~~v~~LL~~GAdin~~  287 (489)
T PHA02798        264 YSVSHNNRKIFEYLLQLGGDINII  287 (489)
T ss_pred             HHHHcCcHHHHHHHHHcCCccccc
Confidence            999999999999999999999863

>PHA02917 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.6e-30  Score=214.02  Aligned_cols=193  Identities=10%  Similarity=0.045  Sum_probs=159.3

Q ss_pred             CCCCCHHHHHHHHc---CCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcc----hHHHHHHcCccccccCCCCCC
Q 026423           25 PTTMDHELLNVLRR---GDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHK----VIPEILRRRDSLLRKNNWKGE   97 (238)
Q Consensus        25 ~~~~~~~l~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~----~~~~Ll~~~~~~~~~~~~~g~   97 (238)
                      ...+.+|||+|+..   |+.+++++|+++|+++ +..+..|.||||+|+..|+.+    +++.|++..+. .+..+  ..
T Consensus        29 d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v-~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~-~n~~~--~~  104 (661)
T PHA02917         29 NQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNP-LHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGY-SNIND--FN  104 (661)
T ss_pred             CCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCc-cccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCC-CCCCC--cc
Confidence            34456689997555   8899999999999999 788999999999999999855    45677754443 23333  23


Q ss_pred             cHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHH--HHcCCHHHHHHHHHcCCccccccC---
Q 026423           98 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNA--VRNKHENVVRMLVKKDRIPLGYLN---  172 (238)
Q Consensus        98 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a--~~~~~~~~~~~ll~~~~~~~~~~~---  172 (238)
                      +++++|+..++.+++++|+++|+++.            .++..|.||||.+  +..|+.+++++|+++|+++ +..+   
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~~Gadin------------~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~v-n~~d~~~  171 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVEHGFDLS------------VKCENHRSVIENYVMTDDPVPEIIDLFIENGCSV-LYEDEDD  171 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHHcCCCCC------------ccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCc-ccccccc
Confidence            67788999999999999999998865            6788999999965  4578999999999999988 4333   


Q ss_pred             CCC-----------CCHHHHHHH-----------cCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCc--chhHHh
Q 026423          173 NAE-----------QTPLSIAID-----------SSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNY--GEPMIF  228 (238)
Q Consensus       173 ~~g-----------~t~l~~a~~-----------~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~--~~~~~L  228 (238)
                      ..|           .||||+|+.           .++.+++++|++.| ++++.+|.+|+||||+|+.+|+.  +++++|
T Consensus       172 ~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~G-advn~~d~~G~TpLh~A~~~g~~~~eivk~L  250 (661)
T PHA02917        172 EYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHG-IKPSSIDKNYCTALQYYIKSSHIDIDIVKLL  250 (661)
T ss_pred             ccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCC-CCcccCCCCCCcHHHHHHHcCCCcHHHHHHH
Confidence            234           599999986           46899999999999 99999999999999999999996  699999


Q ss_pred             hhcccccC
Q 026423          229 ISLNKCLS  236 (238)
Q Consensus       229 ~~~g~~~~  236 (238)
                      ++ |++++
T Consensus       251 i~-g~d~~  257 (661)
T PHA02917        251 MK-GIDNT  257 (661)
T ss_pred             Hh-CCccc
Confidence            85 87653

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=7.3e-30  Score=183.69  Aligned_cols=162  Identities=12%  Similarity=0.108  Sum_probs=142.5

Q ss_pred             CCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhC--CHHHHHHHHhhCccccCCCCCCCcccccc
Q 026423           59 SPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVG--DPAIVSTILKYAPAITNGTESEPESLLRI  136 (238)
Q Consensus        59 ~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~  136 (238)
                      ...+.||||+|+..|+.++++.|+..    .+..+..|.||||+|+..+  +.+++++|+++|+++.            .
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn------------~   81 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVN------------F   81 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCC------------c
Confidence            45689999999999999999999953    4567889999999999854  8999999999998865            3


Q ss_pred             cC-CCCCcHHHHHHHc---CCHHHHHHHHHcCCccccccCCCCCCHHHHHHH--cCcHHHHHHHHhcCCcccccCCCCCC
Q 026423          137 TD-DEGNTPLHNAVRN---KHENVVRMLVKKDRIPLGYLNNAEQTPLSIAID--SSLTDIACFIIDQRPESLNHRLPEEL  210 (238)
Q Consensus       137 ~~-~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~--~~~~~~~~~Ll~~~~~~~~~~~~~g~  210 (238)
                      .+ ..|.||||+|+..   ++.+++++|+++|+++ +..+..|.||||+|+.  .++.+++++|++.| ++++.+|..|.
T Consensus        82 ~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~g-adin~~d~~g~  159 (209)
T PHA02859         82 KTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVRINVIKLLIDSG-VSFLNKDFDNN  159 (209)
T ss_pred             cCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCCHHHHHHHHHcC-CCcccccCCCC
Confidence            54 5799999998764   4799999999999998 7899999999999876  46899999999999 99999999999


Q ss_pred             cHHHH-HHHhcCcchhHHhhhcccccCCC
Q 026423          211 TLLHS-AVMRQNYGEPMIFISLNKCLSIV  238 (238)
Q Consensus       211 t~l~~-A~~~~~~~~~~~L~~~g~~~~~~  238 (238)
                      ||||. |+..++.+++++|+++|++++.+
T Consensus       160 t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~  188 (209)
T PHA02859        160 NILYSYILFHSDKKIFDFLTSLGIDINET  188 (209)
T ss_pred             cHHHHHHHhcCCHHHHHHHHHcCCCCCCC
Confidence            99995 56788999999999999999863

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=9.8e-31  Score=197.21  Aligned_cols=187  Identities=18%  Similarity=0.189  Sum_probs=167.6

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHhh-hhcc-------ccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcH
Q 026423           28 MDHELLNVLRRGDEHQISLIAGR-MQNI-------FSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETP   99 (238)
Q Consensus        28 ~~~~l~~A~~~~~~~~v~~Ll~~-~~~~-------~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~   99 (238)
                      +.+||..|+++|+.++|++|+++ ++++       ++-....|-+||-.|+.-||.++|+.|+ +.++.+|.......||
T Consensus        42 g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~-~~ga~VN~tT~TNStP  120 (615)
T KOG0508|consen   42 GGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLL-RRGASVNDTTRTNSTP  120 (615)
T ss_pred             CCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHH-HhcCccccccccCCcc
Confidence            34589999999999999999993 4443       2334567889988888899999999999 5668888888888899


Q ss_pred             HHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHH
Q 026423          100 LHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPL  179 (238)
Q Consensus       100 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l  179 (238)
                      |--||.-|+.+++++|+++++++.            ..+..|+|+|+.||.+|+.+++++|++.|+++ +.++..|.|+|
T Consensus       121 LraACfDG~leivKyLvE~gad~~------------IanrhGhTcLmIa~ykGh~~I~qyLle~gADv-n~ks~kGNTAL  187 (615)
T KOG0508|consen  121 LRAACFDGHLEIVKYLVEHGADPE------------IANRHGHTCLMIACYKGHVDIAQYLLEQGADV-NAKSYKGNTAL  187 (615)
T ss_pred             HHHHHhcchhHHHHHHHHcCCCCc------------ccccCCCeeEEeeeccCchHHHHHHHHhCCCc-chhcccCchHH
Confidence            999999999999999999998865            68899999999999999999999999999999 89999999999


Q ss_pred             HHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhh
Q 026423          180 SIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFIS  230 (238)
Q Consensus       180 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  230 (238)
                      |.|++.|+++++++|+.+| +.++. |..|.|||..|+.+|+.+++++|++
T Consensus       188 H~caEsG~vdivq~Ll~~g-a~i~~-d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  188 HDCAESGSVDIVQLLLKHG-AKIDV-DGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             HhhhhcccHHHHHHHHhCC-ceeee-cCCCCchHHHHhhhcchHHHHHHhc
Confidence            9999999999999999999 76664 5569999999999999999999996

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.97  E-value=5.4e-29  Score=211.71  Aligned_cols=176  Identities=15%  Similarity=0.197  Sum_probs=161.4

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHh
Q 026423           27 TMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARV  106 (238)
Q Consensus        27 ~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~  106 (238)
                      .+.++|+.||..|+.++++.|++.|.++ +..|..|.||||+|+..|+.+++++|+ ..+++++.+|..|.||||+|+..
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~-n~~d~~G~TpLh~Aa~~g~~~~v~~Ll-~~gadin~~d~~G~TpL~~A~~~  601 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKAKLDP-DIGDSKGRTPLHIAASKGYEDCVLVLL-KHACNVHIRDANGNTALWNAISA  601 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHH-hcCCCCCCcCCCCCCHHHHHHHh
Confidence            3566899999999999999999999999 899999999999999999999999999 57888999999999999999999


Q ss_pred             CCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcC
Q 026423          107 GDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSS  186 (238)
Q Consensus       107 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  186 (238)
                      |+.+++++|++.++..              ....+.++||.|+..|+.+++++|+++|+++ +..|..|.||||+|+..|
T Consensus       602 g~~~iv~~L~~~~~~~--------------~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi-n~~d~~G~TpLh~A~~~g  666 (823)
T PLN03192        602 KHHKIFRILYHFASIS--------------DPHAAGDLLCTAAKRNDLTAMKELLKQGLNV-DSEDHQGATALQVAMAED  666 (823)
T ss_pred             CCHHHHHHHHhcCccc--------------CcccCchHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCC
Confidence            9999999999876442              2345778999999999999999999999998 789999999999999999


Q ss_pred             cHHHHHHHHhcCCcccccCCCCC-CcHHHHHHHhc
Q 026423          187 LTDIACFIIDQRPESLNHRLPEE-LTLLHSAVMRQ  220 (238)
Q Consensus       187 ~~~~~~~Ll~~~~~~~~~~~~~g-~t~l~~A~~~~  220 (238)
                      +.+++++|+++| ++++..|..| .+|.+.+....
T Consensus       667 ~~~iv~~Ll~~G-Adv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        667 HVDMVRLLIMNG-ADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             cHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHHH
Confidence            999999999999 9999999888 99999886543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=4.9e-29  Score=192.65  Aligned_cols=190  Identities=15%  Similarity=0.051  Sum_probs=155.8

Q ss_pred             CCCCCCHHHHHHHH--cCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCC-----CCC
Q 026423           24 LPTTMDHELLNVLR--RGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNN-----WKG   96 (238)
Q Consensus        24 ~~~~~~~~l~~A~~--~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~-----~~g   96 (238)
                      .....+++||.|+.  .|+.+++++|+++|+++ +.  .++.||||+|+..++.+++++|++.+..+.+..+     ..+
T Consensus       112 ~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADI-n~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~  188 (437)
T PHA02795        112 NCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVI-YK--IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQ  188 (437)
T ss_pred             ccccccHHHHHHHHhcCCCHHHHHHHHHCCCCC-CC--CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhc
Confidence            34457779999999  89999999999999999 55  3558999999999999999999965543433331     347


Q ss_pred             CcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCC
Q 026423           97 ETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQ  176 (238)
Q Consensus        97 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~  176 (238)
                      .+++|.|...++.+++++|+++|+++.            .++..|.||||+|+..|+.+++++|+++|+++ +..+..|.
T Consensus       189 ~t~l~~a~~~~~~eIve~LIs~GADIN------------~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdI-N~~d~~G~  255 (437)
T PHA02795        189 YTRGFLVDEPTVLEIYKLCIPYIEDIN------------QLDAGGRTLLYRAIYAGYIDLVSWLLENGANV-NAVMSNGY  255 (437)
T ss_pred             cchhHHHHhcCHHHHHHHHHhCcCCcC------------cCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCC
Confidence            789999999999999999999998865            68899999999999999999999999999998 78999999


Q ss_pred             CHHHHHHHcCc--------HHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhccccc
Q 026423          177 TPLSIAIDSSL--------TDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCL  235 (238)
Q Consensus       177 t~l~~a~~~~~--------~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~  235 (238)
                      ||||+|+..|+        .+++++|+++| ++++.....   ++..  ...+.++++.+++++..+
T Consensus       256 TpLh~Aa~~g~~~~~~~~~~eIvelLL~~g-adI~~~~~~---~~~~--~~~n~~~ik~lI~y~~~l  316 (437)
T PHA02795        256 TCLDVAVDRGSVIARRETHLKILEILLREP-LSIDCIKLA---ILNN--TIENHDVIKLCIKYFMMV  316 (437)
T ss_pred             CHHHHHHHcCCcccccccHHHHHHHHHhCC-CCCCchhHH---hhhc--ccchHHHHHHHHHHHHhc
Confidence            99999999884        69999999988 777654332   2211  112567888877766543

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=8.4e-30  Score=192.22  Aligned_cols=192  Identities=21%  Similarity=0.280  Sum_probs=167.8

Q ss_pred             HHHHHHcCCHHHHHHHHhhhh--ccc--cccCCCCchHHHHHHHcCCcchHHHHHHcCccccccC--------CCCCCcH
Q 026423           32 LLNVLRRGDEHQISLIAGRMQ--NIF--STMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKN--------NWKGETP   99 (238)
Q Consensus        32 l~~A~~~~~~~~v~~Ll~~~~--~~~--~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~--------~~~g~~~   99 (238)
                      ...|++.|+...++.|+....  ++.  .-....|.|||-+|+++||.+++++|++++++.+...        ...|-+|
T Consensus         8 ~~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~Iegapp   87 (615)
T KOG0508|consen    8 VINAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPP   87 (615)
T ss_pred             HHHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCch
Confidence            447888899888887776533  111  2235678899999999999999999998777665443        3467889


Q ss_pred             HHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHH
Q 026423          100 LHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPL  179 (238)
Q Consensus       100 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l  179 (238)
                      |-.|+..|+.++|+.|+++|++.+            .......|||..||..|+.+++++|+++|+++ +..|..|.|.|
T Consensus        88 LWaAsaAGHl~vVk~L~~~ga~VN------------~tT~TNStPLraACfDG~leivKyLvE~gad~-~IanrhGhTcL  154 (615)
T KOG0508|consen   88 LWAASAAGHLEVVKLLLRRGASVN------------DTTRTNSTPLRAACFDGHLEIVKYLVEHGADP-EIANRHGHTCL  154 (615)
T ss_pred             hhHHhccCcHHHHHHHHHhcCccc------------cccccCCccHHHHHhcchhHHHHHHHHcCCCC-cccccCCCeeE
Confidence            999999999999999999998765            35566789999999999999999999999999 89999999999


Q ss_pred             HHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCC
Q 026423          180 SIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  237 (238)
Q Consensus       180 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~  237 (238)
                      |+|+-+|+.+++++|++.| +|+|.++..|+|+||.+++.|+.|++++|+.+|+.++.
T Consensus       155 mIa~ykGh~~I~qyLle~g-ADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~  211 (615)
T KOG0508|consen  155 MIACYKGHVDIAQYLLEQG-ADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV  211 (615)
T ss_pred             EeeeccCchHHHHHHHHhC-CCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeee
Confidence            9999999999999999999 99999999999999999999999999999999998865

>PHA02730 ankyrin-like protein; Provisional

Probab=99.96  E-value=7.4e-29  Score=200.32  Aligned_cols=197  Identities=12%  Similarity=0.059  Sum_probs=157.2

Q ss_pred             CCCCCCHHHHHHHHcC---CHHHHHHHHhhhhccccccCCCCchHHHHHHHcC--CcchHHHHHHcC-ccccccCCCCCC
Q 026423           24 LPTTMDHELLNVLRRG---DEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFR--NHKVIPEILRRR-DSLLRKNNWKGE   97 (238)
Q Consensus        24 ~~~~~~~~l~~A~~~~---~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~--~~~~~~~Ll~~~-~~~~~~~~~~g~   97 (238)
                      ....+.||||+|+..|   +.+++++|+++|+++ +.+|..|.||||+|+..+  +.+++++|++.+ ++..+..+..+.
T Consensus        37 kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdi-n~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d  115 (672)
T PHA02730         37 IDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVER-LCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNIND  115 (672)
T ss_pred             cCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCC-cccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCC
Confidence            3445677999999997   599999999999999 899999999999999976  799999999543 344566777789


Q ss_pred             cHHHHHHH--hCCHHHHHHHHh-hCccccCCCCCCCccccccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCccc-----
Q 026423           98 TPLHIAAR--VGDPAIVSTILK-YAPAITNGTESEPESLLRIT-DDEGNTPLHNAVRNKHENVVRMLVKKDRIPL-----  168 (238)
Q Consensus        98 ~~l~~a~~--~~~~~~~~~ll~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~-----  168 (238)
                      +||+.++.  +++.+++++|+. .+.++....        +.. ...|.+|++.+...+..+++++|+++|++..     
T Consensus       116 ~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~--------~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~  187 (672)
T PHA02730        116 FDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNT--------NYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFR  187 (672)
T ss_pred             chHHHHHHhcCCcHHHHHHHHHhcCCChhhhh--------hhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccc
Confidence            99999888  899999999997 444433110        011 1378899999999999999999999999872     


Q ss_pred             -cccCCCC-CCHHHHH------HHcCcHHHHHHHHhcCCcccccCCCCCCcHHHH--HHHhcCcchhHHhhh
Q 026423          169 -GYLNNAE-QTPLSIA------IDSSLTDIACFIIDQRPESLNHRLPEELTLLHS--AVMRQNYGEPMIFIS  230 (238)
Q Consensus       169 -~~~~~~g-~t~l~~a------~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~--A~~~~~~~~~~~L~~  230 (238)
                       ...+..+ .|.||++      ...+..+++++|+++| ++++.+|..|.||||+  |...++.|++++|++
T Consensus       188 ~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~G-adIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        188 SCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNN-VSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             cccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence             1133333 3455533      3446899999999999 9999999999999996  445567999999999

>PHA02730 ankyrin-like protein; Provisional

Probab=99.96  E-value=3.4e-28  Score=196.56  Aligned_cols=211  Identities=14%  Similarity=0.117  Sum_probs=167.5

Q ss_pred             hhhhhhh----ccccCCCCCCCCCCCCCCHHHHH--HHHcCCHHHHHHHHh-----------------------------
Q 026423            5 SFEMTEF----GTDYKEPTMDQELPTTMDHELLN--VLRRGDEHQISLIAG-----------------------------   49 (238)
Q Consensus         5 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~--A~~~~~~~~v~~Ll~-----------------------------   49 (238)
                      +.|+++.    |++++.++..+.      ||||+  |...|+.+++++|++                             
T Consensus       214 ~~eiv~lLIs~GadIN~kd~~G~------TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (672)
T PHA02730        214 SKDVIKCLIDNNVSIHGRDEGGS------LPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFR  287 (672)
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCC------CHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhh
Confidence            4555555    666666554444      48985  445577999999999                             


Q ss_pred             ---hhhccccc--------------------cCCCCch---------------------HHHHHHHcC---CcchHHHHH
Q 026423           50 ---RMQNIFST--------------------MSPRGNT---------------------VLHMAIRFR---NHKVIPEIL   82 (238)
Q Consensus        50 ---~~~~~~~~--------------------~~~~g~t---------------------~L~~a~~~~---~~~~~~~Ll   82 (238)
                         +|+|. ..                    .+..|.+                     .||.=...+   +.+++++|+
T Consensus       288 ~~~~~~d~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLI  366 (672)
T PHA02730        288 VTPYNVDM-EIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCML  366 (672)
T ss_pred             cccCCcch-HHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHH
Confidence               67766 33                    4556654                     566655544   579999999


Q ss_pred             HcCccccccCCCCCCcHHHHHHHhCC----HHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHH---HHHcC---
Q 026423           83 RRRDSLLRKNNWKGETPLHIAARVGD----PAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHN---AVRNK---  152 (238)
Q Consensus        83 ~~~~~~~~~~~~~g~~~l~~a~~~~~----~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---a~~~~---  152 (238)
                       ++|++++.. ..|.||||+|+..++    .+++++|+++|++..          ++.++..|.||||.   |...+   
T Consensus       367 -s~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~d----------IN~kd~~G~T~Lh~~i~a~~~n~~~  434 (672)
T PHA02730        367 -DNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMA----------INHVSNNGRLCMYGLILSRFNNCGY  434 (672)
T ss_pred             -HCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCcc----------ccccccCCCchHhHHHHHHhccccc
Confidence             678888876 789999999998875    899999999986421          23578899999984   33232   


Q ss_pred             ------CHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCC-CCCcHHHHHHHh--cCcc
Q 026423          153 ------HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLP-EELTLLHSAVMR--QNYG  223 (238)
Q Consensus       153 ------~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~l~~A~~~--~~~~  223 (238)
                            ..+++++|+++|+++ +.+|..|.||||+|+..++.+++++|+++| ++++.++. .|.||+|+|+.+  ++.+
T Consensus       435 ~~~e~~~~~ivk~LIs~GADI-NakD~~G~TPLh~Aa~~~~~eive~LI~~G-AdIN~~d~~~g~TaL~~Aa~~~~~~~e  512 (672)
T PHA02730        435 HCYETILIDVFDILSKYMDDI-DMIDNENKTLLYYAVDVNNIQFARRLLEYG-ASVNTTSRSIINTAIQKSSYRRENKTK  512 (672)
T ss_pred             cccchhHHHHHHHHHhcccch-hccCCCCCCHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCcCCcCHHHHHHHhhcCcHH
Confidence                  235799999999998 899999999999999999999999999999 99999997 599999999985  6899


Q ss_pred             hhHHhhhcccccC
Q 026423          224 EPMIFISLNKCLS  236 (238)
Q Consensus       224 ~~~~L~~~g~~~~  236 (238)
                      ++++|+++|++++
T Consensus       513 Iv~~LLs~ga~i~  525 (672)
T PHA02730        513 LVDLLLSYHPTLE  525 (672)
T ss_pred             HHHHHHHcCCCHH
Confidence            9999999999875

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.96  E-value=1.1e-28  Score=207.01  Aligned_cols=200  Identities=22%  Similarity=0.235  Sum_probs=153.3

Q ss_pred             HHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcC-CcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCH
Q 026423           31 ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFR-NHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDP  109 (238)
Q Consensus        31 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~-~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~  109 (238)
                      |||.|+..++..+|+.++++|++. +..+..|.||+|+|+..| ..+....++ +.+.+++.....|.||||+|+..|+.
T Consensus       410 plh~aa~~~~~~~v~l~l~~gA~~-~~~~~lG~T~lhvaa~~g~~~~~~~~l~-~~g~~~n~~s~~G~T~Lhlaaq~Gh~  487 (1143)
T KOG4177|consen  410 PLHVAAHYGNPRVVKLLLKRGASP-NAKAKLGYTPLHVAAKKGRYLQIARLLL-QYGADPNAVSKQGFTPLHLAAQEGHT  487 (1143)
T ss_pred             eeeehhhccCcceEEEEeccCCCh-hhHhhcCCChhhhhhhcccHhhhhhhHh-hcCCCcchhccccCcchhhhhccCCc
Confidence            566666666666666666666666 666666666666666666 455555555 55556666666666666666666666


Q ss_pred             HHHHHHHhhCccccCCCCCC---------------------CcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccc
Q 026423          110 AIVSTILKYAPAITNGTESE---------------------PESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPL  168 (238)
Q Consensus       110 ~~~~~ll~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~  168 (238)
                      ++++.+++.++.........                     .....+.++..+.||||.|+.+|+..+|++|+++|++. 
T Consensus       488 ~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv-  566 (1143)
T KOG4177|consen  488 EVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADV-  566 (1143)
T ss_pred             hHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccc-
Confidence            66666666553322211111                     02234567889999999999999999999999999999 


Q ss_pred             cccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccc
Q 026423          169 GYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKC  234 (238)
Q Consensus       169 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~  234 (238)
                      +.++..|+||||.|+..|+.+++++|+++| +++|..|.+|.|||++|+..|+.++++.|...|++
T Consensus       567 ~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~G-A~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  567 NAKDKLGYTPLHQAAQQGHNDIAELLLKHG-ASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             cccCCCCCChhhHHHHcChHHHHHHHHHcC-CCCCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence            788899999999999999999999999999 99999999999999999999999999999999886

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.96  E-value=1.4e-29  Score=212.32  Aligned_cols=209  Identities=20%  Similarity=0.268  Sum_probs=184.1

Q ss_pred             CCCCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHH
Q 026423           25 PTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAA  104 (238)
Q Consensus        25 ~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~  104 (238)
                      ...+.+|+|.|+..|..+.++.++.+|.++ +.....|.||||.|+..++..+++.++ ..++..+..+..|.||+|+|+
T Consensus       371 ~~k~~~pl~la~~~g~~~~v~Lll~~ga~~-~~~gk~gvTplh~aa~~~~~~~v~l~l-~~gA~~~~~~~lG~T~lhvaa  448 (1143)
T KOG4177|consen  371 EEKGFTPLHLAVKSGRVSVVELLLEAGADP-NSAGKNGVTPLHVAAHYGNPRVVKLLL-KRGASPNAKAKLGYTPLHVAA  448 (1143)
T ss_pred             cccCCcchhhhcccCchhHHHhhhhccCCc-ccCCCCCcceeeehhhccCcceEEEEe-ccCCChhhHhhcCCChhhhhh
Confidence            344566899999999999999999999998 999999999999999999999999999 577888999999999999999


Q ss_pred             HhC-CHHHHHHHHhhCccccCCCCCCC---------------------cccccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 026423          105 RVG-DPAIVSTILKYAPAITNGTESEP---------------------ESLLRITDDEGNTPLHNAVRNKHENVVRMLVK  162 (238)
Q Consensus       105 ~~~-~~~~~~~ll~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~  162 (238)
                      ..| ..+....+++.+.+++....++.                     ....+.....+.+++|.+...+...+++.+++
T Consensus       449 ~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~  528 (1143)
T KOG4177|consen  449 KKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLE  528 (1143)
T ss_pred             hcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhh
Confidence            999 88888999999988765544432                     11234445667778888888888888888888


Q ss_pred             cCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCC
Q 026423          163 KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  237 (238)
Q Consensus       163 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~  237 (238)
                      +|+.. ..++..|+||||+|+.+|+.++|++|+++| ++++.+++.|+||||.|+..|+.+++++|+++|+++|-
T Consensus       529 ~ga~v-~~~~~r~~TpLh~A~~~g~v~~VkfLLe~g-Adv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna  601 (1143)
T KOG4177|consen  529 HGANV-DLRTGRGYTPLHVAVHYGNVDLVKFLLEHG-ADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNA  601 (1143)
T ss_pred             cCCce-ehhcccccchHHHHHhcCCchHHHHhhhCC-ccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCc
Confidence            88877 678889999999999999999999999999 99999999999999999999999999999999999873

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.96  E-value=1.9e-27  Score=202.32  Aligned_cols=162  Identities=25%  Similarity=0.244  Sum_probs=149.2

Q ss_pred             CCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccC
Q 026423           59 SPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITD  138 (238)
Q Consensus        59 ~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~  138 (238)
                      +..+.++|+.||..|+.++++.|+ +.+.+++..|..|.||||+|+..|+.+++++|+++|++++            .+|
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll-~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin------------~~d  588 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELL-KAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVH------------IRD  588 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCC------------CcC
Confidence            445678999999999999999999 6788899999999999999999999999999999998754            678


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHH
Q 026423          139 DEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVM  218 (238)
Q Consensus       139 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~  218 (238)
                      ..|+||||+|+..|+.+++++|++.++..   ....+.++||.|+..|+.++++.|+++| ++++.+|..|.||||+|+.
T Consensus       589 ~~G~TpL~~A~~~g~~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~G-adin~~d~~G~TpLh~A~~  664 (823)
T PLN03192        589 ANGNTALWNAISAKHHKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQG-LNVDSEDHQGATALQVAMA  664 (823)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHH
Confidence            89999999999999999999999887654   2356779999999999999999999999 9999999999999999999


Q ss_pred             hcCcchhHHhhhcccccCC
Q 026423          219 RQNYGEPMIFISLNKCLSI  237 (238)
Q Consensus       219 ~~~~~~~~~L~~~g~~~~~  237 (238)
                      .|+.+++++|+++|++++.
T Consensus       665 ~g~~~iv~~Ll~~GAdv~~  683 (823)
T PLN03192        665 EDHVDMVRLLIMNGADVDK  683 (823)
T ss_pred             CCcHHHHHHHHHcCCCCCC
Confidence            9999999999999999875

>PHA02917 ankyrin-like protein; Provisional

Probab=99.95  E-value=4.4e-27  Score=193.84  Aligned_cols=224  Identities=13%  Similarity=-0.005  Sum_probs=167.0

Q ss_pred             chhhhhhhccccCCCCCCCCCCCCCCHHHHHHHHcCCHH----HHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHH
Q 026423            4 RSFEMTEFGTDYKEPTMDQELPTTMDHELLNVLRRGDEH----QISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIP   79 (238)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~   79 (238)
                      ++.++++..++... +.+ .....+.||||+|+..|+.+    +++.|++.+... +..+  ..+++++|+..++.++++
T Consensus        46 ~~~~~v~~Ll~~ga-~v~-~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~-n~~~--~~~~~~~a~~~~~~e~vk  120 (661)
T PHA02917         46 NNVEVVKLLLDSGT-NPL-HKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYS-NIND--FNIFSYMKSKNVDVDLIK  120 (661)
T ss_pred             CcHHHHHHHHHCCC-Ccc-ccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCC-CCCC--cchHHHHHhhcCCHHHHH
Confidence            45677766554322 222 22344566899999999854    567888765443 3322  236788899999999999


Q ss_pred             HHHHcCccccccCCCCCCcHHHHHH--HhCCHHHHHHHHhhCccccCCCCCCC--cccccccCCCCCcHHHHHHH-----
Q 026423           80 EILRRRDSLLRKNNWKGETPLHIAA--RVGDPAIVSTILKYAPAITNGTESEP--ESLLRITDDEGNTPLHNAVR-----  150 (238)
Q Consensus        80 ~Ll~~~~~~~~~~~~~g~~~l~~a~--~~~~~~~~~~ll~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~a~~-----  150 (238)
                      +|+ ..+++++.++..|+||||.|+  ..|+.+++++|+++|+++......+.  ..........+.||||+|+.     
T Consensus       121 ~Ll-~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~  199 (661)
T PHA02917        121 VLV-EHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYS  199 (661)
T ss_pred             HHH-HcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccc
Confidence            999 689999999999999999654  46899999999999998753211000  00111233455799999986     


Q ss_pred             ------cCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcH--HHHHHHHhcCCcccc----cCCCCCCcHHHHHHH
Q 026423          151 ------NKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLT--DIACFIIDQRPESLN----HRLPEELTLLHSAVM  218 (238)
Q Consensus       151 ------~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~--~~~~~Ll~~~~~~~~----~~~~~g~t~l~~A~~  218 (238)
                            .++.+++++|+++|+++ +..+..|.||||+|++.|+.  +++++|++ | ++.+    ..+..|.+|+++|+.
T Consensus       200 ~~~~~~~~~~eiv~~Li~~Gadv-n~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g-~d~~~~~~~~~~~~~~~~~~a~y  276 (661)
T PHA02917        200 ESDTRAYVRPEVVKCLINHGIKP-SSIDKNYCTALQYYIKSSHIDIDIVKLLMK-G-IDNTAYSYIDDLTCCTRGIMADY  276 (661)
T ss_pred             cccccccCcHHHHHHHHHCCCCc-ccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-C-CcccccccccCcccccchHHHHH
Confidence                  46899999999999998 88999999999999999985  79999985 6 5553    466678889999984


Q ss_pred             hc---------CcchhHHhhhcccccC
Q 026423          219 RQ---------NYGEPMIFISLNKCLS  236 (238)
Q Consensus       219 ~~---------~~~~~~~L~~~g~~~~  236 (238)
                      -+         +.+++++|++.|++..
T Consensus       277 l~~~~~~~~~v~~~iv~~Li~~Ga~~~  303 (661)
T PHA02917        277 LNSDYRYNKDVDLDLVKLFLENGKPHG  303 (661)
T ss_pred             HHhhccccccchHHHHHHHHhCCCCCc
Confidence            21         6789999999998753

>PHA02792 ankyrin-like protein; Provisional

Probab=99.95  E-value=7.7e-27  Score=186.95  Aligned_cols=230  Identities=11%  Similarity=0.056  Sum_probs=172.6

Q ss_pred             chhhhhhhccccCCCCCCCCCCCCCCHHHHHHHH-cCCHHHHHHHHhhhhcc----------------------------
Q 026423            4 RSFEMTEFGTDYKEPTMDQELPTTMDHELLNVLR-RGDEHQISLIAGRMQNI----------------------------   54 (238)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~-~~~~~~v~~Ll~~~~~~----------------------------   54 (238)
                      ++.|+++..++. ..+++..++ ++.+++++|+. .++.+++++|+++|+++                            
T Consensus        83 ~~lElvk~LI~~-GAdvN~~~n-~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  160 (631)
T PHA02792         83 IDIELLKLLISK-GLEINSIKN-GINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELD  160 (631)
T ss_pred             ccHHHHHHHHHc-CCCcccccC-CCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhcc
Confidence            345666664442 223332222 35568899966 69999999999999763                            


Q ss_pred             -------ccccCCCCchHHHHHHHcC-------CcchHHHHHHcCccccccCCCCCCcHHHHHHHhC--CHHHHHHHHhh
Q 026423           55 -------FSTMSPRGNTVLHMAIRFR-------NHKVIPEILRRRDSLLRKNNWKGETPLHIAARVG--DPAIVSTILKY  118 (238)
Q Consensus        55 -------~~~~~~~g~t~L~~a~~~~-------~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~--~~~~~~~ll~~  118 (238)
                             .+..+..|.||||+|+..+       +.++++.|+ ++++.++.++..|.||||+|+.+.  ..+++++|++.
T Consensus       161 ~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li-~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~  239 (631)
T PHA02792        161 DYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLI-SHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDS  239 (631)
T ss_pred             ccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHH-hCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhc
Confidence                   1233456999999999998       799999999 688888889999999999999998  89999999874


Q ss_pred             CccccC-------------CCC---CC------------C----------------------------------------
Q 026423          119 APAITN-------------GTE---SE------------P----------------------------------------  130 (238)
Q Consensus       119 ~~~~~~-------------~~~---~~------------~----------------------------------------  130 (238)
                      .-....             ...   -.            +                                        
T Consensus       240 ~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v  319 (631)
T PHA02792        240 NYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTV  319 (631)
T ss_pred             cccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCc
Confidence            221100             000   00            0                                        


Q ss_pred             -----ccc----ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCC--CCHHHHHHHcCcH---HHHHHHHh
Q 026423          131 -----ESL----LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE--QTPLSIAIDSSLT---DIACFIID  196 (238)
Q Consensus       131 -----~~~----~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g--~t~l~~a~~~~~~---~~~~~Ll~  196 (238)
                           +.+    .+.........++.|+..|+.+++++|+++|+++ +..+..|  .||||+|......   +++++|++
T Consensus       320 ~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADI-N~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs  398 (631)
T PHA02792        320 YINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVV-VEDDDNIINIMPLFPTLSIHESDVLSILKLCKP  398 (631)
T ss_pred             cHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCch-hhhcCCCCChhHHHHHHHhccHhHHHHHHHHHh
Confidence                 000    0111123455688999999999999999999998 6777664  6999988776654   46888899


Q ss_pred             cCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCCC
Q 026423          197 QRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV  238 (238)
Q Consensus       197 ~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~~  238 (238)
                      +| ++++.+|..|+||||+|+..++.+++++|+++|++++.+
T Consensus       399 ~G-ADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~k  439 (631)
T PHA02792        399 YI-DDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINIT  439 (631)
T ss_pred             cC-CccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence            99 999999999999999999999999999999999999863

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.95  E-value=1.1e-27  Score=164.00  Aligned_cols=201  Identities=15%  Similarity=0.103  Sum_probs=171.3

Q ss_pred             hccccCCCCCCCCCCCCCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccc
Q 026423           11 FGTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLR   90 (238)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~   90 (238)
                      ..+.++...+...++ .+.++++.++-++....+..++..|... +..+-.+.+|+.+++...+.+.+..+.   ...+|
T Consensus        80 ~s~~~~~~~~~~t~p-~g~~~~~v~ap~~s~~k~sttltN~~rg-nevs~~p~s~~slsVhql~L~~~~~~~---~n~VN  154 (296)
T KOG0502|consen   80 QSAQLDPDAIDETDP-EGWSALLVAAPCGSVDKVSTTLTNGARG-NEVSLMPWSPLSLSVHQLHLDVVDLLV---NNKVN  154 (296)
T ss_pred             HhhccCCCCCCCCCc-hhhhhhhhcCCCCCcceeeeeecccccC-CccccccCChhhHHHHHHHHHHHHHHh---hcccc
Confidence            334444444444333 3667899999999999999999999988 888999999999999988777776665   34567


Q ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccc
Q 026423           91 KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGY  170 (238)
Q Consensus        91 ~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~  170 (238)
                      ..|..|.|||.||+..|++.++++|++.|+++.            ..-+...++|.+|++.|..+++++|+.++.++ +.
T Consensus       155 ~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~------------~lgk~resALsLAt~ggytdiV~lLL~r~vdV-Nv  221 (296)
T KOG0502|consen  155 ACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPD------------ALGKYRESALSLATRGGYTDIVELLLTREVDV-NV  221 (296)
T ss_pred             CccccCchHhHHHHhcCchHHHHHHHHcCCChh------------hhhhhhhhhHhHHhcCChHHHHHHHHhcCCCc-ce
Confidence            889999999999999999999999999998865            45667889999999999999999999999998 89


Q ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhc
Q 026423          171 LNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISL  231 (238)
Q Consensus       171 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  231 (238)
                      .|.+|.|||-+|++.++.++++.|+..| +++++.+..|.++++.|+..|+- +++..++.
T Consensus       222 yDwNGgTpLlyAvrgnhvkcve~Ll~sG-Ad~t~e~dsGy~~mdlAValGyr-~Vqqvie~  280 (296)
T KOG0502|consen  222 YDWNGGTPLLYAVRGNHVKCVESLLNSG-ADVTQEDDSGYWIMDLAVALGYR-IVQQVIEK  280 (296)
T ss_pred             eccCCCceeeeeecCChHHHHHHHHhcC-CCcccccccCCcHHHHHHHhhhH-HHHHHHHH
Confidence            9999999999999999999999999999 99999999999999999999886 77666654

>PHA02792 ankyrin-like protein; Provisional

Probab=99.95  E-value=4.6e-26  Score=182.52  Aligned_cols=195  Identities=14%  Similarity=0.133  Sum_probs=158.2

Q ss_pred             CCCCCHHHHHHHHcC-------CHHHHHHHHhhhhccccccCCCCchHHHHHHHcC--CcchHHHHHHc-----------
Q 026423           25 PTTMDHELLNVLRRG-------DEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFR--NHKVIPEILRR-----------   84 (238)
Q Consensus        25 ~~~~~~~l~~A~~~~-------~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~--~~~~~~~Ll~~-----------   84 (238)
                      ...+.||||+|+..+       ..++++.|+++|+++ +..|..|.||||+|+.+.  ..++++.|++.           
T Consensus       172 ~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~-~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l  250 (631)
T PHA02792        172 DRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEM-RYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNIL  250 (631)
T ss_pred             CCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCc-CccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHH
Confidence            445788999999999       899999999999999 888999999999999998  67888888761           


Q ss_pred             -------------------------------------------------------------------------------C
Q 026423           85 -------------------------------------------------------------------------------R   85 (238)
Q Consensus        85 -------------------------------------------------------------------------------~   85 (238)
                                                                                                     .
T Consensus       251 ~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~  330 (631)
T PHA02792        251 SNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDE  330 (631)
T ss_pred             HHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHC
Confidence                                                                                           1


Q ss_pred             ccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCC--CCcHHHHHHHcCCHH---HHHHH
Q 026423           86 DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDE--GNTPLHNAVRNKHEN---VVRML  160 (238)
Q Consensus        86 ~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~a~~~~~~~---~~~~l  160 (238)
                      |....  ......+++.|+..++.+++++|+++|+++.            .++..  +.||||.|+.....+   +++++
T Consensus       331 Ga~~~--r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN------------~kD~~g~~~TpLh~A~~n~~~~v~~IlklL  396 (631)
T PHA02792        331 GATLY--RFKHINKYFQKFDNRDPKVVEYILKNGNVVV------------EDDDNIINIMPLFPTLSIHESDVLSILKLC  396 (631)
T ss_pred             CCccc--cCCcchHHHHHHHcCCHHHHHHHHHcCCchh------------hhcCCCCChhHHHHHHHhccHhHHHHHHHH
Confidence            11110  0013445667777788888888888887754            45555  468999987766543   57889


Q ss_pred             HHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHH----------hcCcchhHHhhh
Q 026423          161 VKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVM----------RQNYGEPMIFIS  230 (238)
Q Consensus       161 l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~----------~~~~~~~~~L~~  230 (238)
                      +++|+++ +.+|..|.||||+|+..++.+++++|+++| ++++.++..|.||+++|+.          ....++++.|++
T Consensus       397 Is~GADI-N~kD~~G~TPLh~Aa~~~n~eivelLLs~G-ADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs  474 (631)
T PHA02792        397 KPYIDDI-NKIDKHGRSILYYCIESHSVSLVEWLIDNG-ADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILS  474 (631)
T ss_pred             HhcCCcc-ccccccCcchHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHh
Confidence            9999998 789999999999999999999999999999 9999999999999999976          223567999999


Q ss_pred             cccccC
Q 026423          231 LNKCLS  236 (238)
Q Consensus       231 ~g~~~~  236 (238)
                      +|.+++
T Consensus       475 ~~p~i~  480 (631)
T PHA02792        475 KLPTIE  480 (631)
T ss_pred             cCCChh
Confidence            998765

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.94  E-value=1.4e-27  Score=163.53  Aligned_cols=193  Identities=18%  Similarity=0.155  Sum_probs=173.6

Q ss_pred             CHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCC
Q 026423           29 DHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGD  108 (238)
Q Consensus        29 ~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~  108 (238)
                      ++.+..+.+.++.+.+.....-..+-...++.+|+++++.++-+++...+..++ .++...+..+..+++|+.+++...+
T Consensus        63 e~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttl-tN~~rgnevs~~p~s~~slsVhql~  141 (296)
T KOG0502|consen   63 ESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTL-TNGARGNEVSLMPWSPLSLSVHQLH  141 (296)
T ss_pred             CcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeee-cccccCCccccccCChhhHHHHHHH
Confidence            335667788888888888888777665778889999999999999999999998 6777788889999999999999998


Q ss_pred             HHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcH
Q 026423          109 PAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLT  188 (238)
Q Consensus       109 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  188 (238)
                      .+.+..+.++.              ++..|..|.|||.||+.+|+..++++|++.|+++ ........|+|.+|++.|+.
T Consensus       142 L~~~~~~~~n~--------------VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp-~~lgk~resALsLAt~ggyt  206 (296)
T KOG0502|consen  142 LDVVDLLVNNK--------------VNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP-DALGKYRESALSLATRGGYT  206 (296)
T ss_pred             HHHHHHHhhcc--------------ccCccccCchHhHHHHhcCchHHHHHHHHcCCCh-hhhhhhhhhhHhHHhcCChH
Confidence            88888777765              4478999999999999999999999999999999 67778889999999999999


Q ss_pred             HHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCCC
Q 026423          189 DIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV  238 (238)
Q Consensus       189 ~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~~  238 (238)
                      ++|++|++++ .++|..|-+|.|||-+|++-++.++++.|+..|++++++
T Consensus       207 diV~lLL~r~-vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e  255 (296)
T KOG0502|consen  207 DIVELLLTRE-VDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQE  255 (296)
T ss_pred             HHHHHHHhcC-CCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccc
Confidence            9999999999 999999999999999999999999999999999999864

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=1.5e-26  Score=169.48  Aligned_cols=163  Identities=20%  Similarity=0.244  Sum_probs=148.2

Q ss_pred             cccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHh-----CCHHHHHHHHhhCccccCCCCCCC
Q 026423           56 STMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARV-----GDPAIVSTILKYAPAITNGTESEP  130 (238)
Q Consensus        56 ~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~-----~~~~~~~~ll~~~~~~~~~~~~~~  130 (238)
                      +..|..|+|+||||+..+++++|+.||+.+-++++..+..|+||+++++..     .+.++|.-|++.| +++.      
T Consensus       262 NlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNa------  334 (452)
T KOG0514|consen  262 NLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNA------  334 (452)
T ss_pred             hhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccch------
Confidence            667999999999999999999999999999999999999999999998753     4678899999877 2221      


Q ss_pred             cccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCC
Q 026423          131 ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEEL  210 (238)
Q Consensus       131 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~  210 (238)
                           .-...|.|+|.+|+.+|+.++++.|+.+|+++ +..|.+|.|+|++|+++|++|++++|+....+++...|.+|.
T Consensus       335 -----KAsQ~gQTALMLAVSHGr~d~vk~LLacgAdV-NiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgS  408 (452)
T KOG0514|consen  335 -----KASQHGQTALMLAVSHGRVDMVKALLACGADV-NIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGS  408 (452)
T ss_pred             -----hhhhhcchhhhhhhhcCcHHHHHHHHHccCCC-ccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCc
Confidence                 23467999999999999999999999999999 899999999999999999999999999988899999999999


Q ss_pred             cHHHHHHHhcCcchhHHhhhc
Q 026423          211 TLLHSAVMRQNYGEPMIFISL  231 (238)
Q Consensus       211 t~l~~A~~~~~~~~~~~L~~~  231 (238)
                      |+|.+|...|+-|+.-.|..+
T Consensus       409 TAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  409 TALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             hhhhhHHhcCchHHHHHHHHH
Confidence            999999999999999888654

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=6.5e-25  Score=185.82  Aligned_cols=199  Identities=16%  Similarity=0.090  Sum_probs=142.6

Q ss_pred             CCCHHHH-HHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcC---CcchHHHHHHcCcc---------ccccCC
Q 026423           27 TMDHELL-NVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFR---NHKVIPEILRRRDS---------LLRKNN   93 (238)
Q Consensus        27 ~~~~~l~-~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~---~~~~~~~Ll~~~~~---------~~~~~~   93 (238)
                      .+.+||| .|+..++.++++.|++.|.     .+..|.||||.|+..+   ...++..+......         ......
T Consensus        51 ~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~  125 (743)
T TIGR00870        51 LGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEF  125 (743)
T ss_pred             cchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhcccccccc
Confidence            3455777 7777777777777777765     3556778888777621   11223333321111         011123


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCC--cccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCcccccc
Q 026423           94 WKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP--ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYL  171 (238)
Q Consensus        94 ~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~  171 (238)
                      ..|.||||+|+..|+.+++++|+++|++++.......  ..........|.+|||.|+..|+.+++++|++.|+++ +..
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadi-n~~  204 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADI-LTA  204 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcch-hhH
Confidence            4699999999999999999999999998764221100  0000012246899999999999999999999999987 788


Q ss_pred             CCCCCCHHHHHHHcC---------cHHHHHHHHhcCCccc-------ccCCCCCCcHHHHHHHhcCcchhHHhhhcc
Q 026423          172 NNAEQTPLSIAIDSS---------LTDIACFIIDQRPESL-------NHRLPEELTLLHSAVMRQNYGEPMIFISLN  232 (238)
Q Consensus       172 ~~~g~t~l~~a~~~~---------~~~~~~~Ll~~~~~~~-------~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g  232 (238)
                      |..|+||||+|+..+         ...+.+++++.+ +..       +..|..|.||+++|+..|+.+++++|++.+
T Consensus       205 d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll-~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~  280 (743)
T TIGR00870       205 DSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLL-DKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIK  280 (743)
T ss_pred             hhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-hccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHH
Confidence            999999999999886         234666676665 332       667899999999999999999999999854

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.93  E-value=3.2e-25  Score=169.98  Aligned_cols=203  Identities=18%  Similarity=0.176  Sum_probs=163.2

Q ss_pred             HHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHH
Q 026423           31 ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPA  110 (238)
Q Consensus        31 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~  110 (238)
                      .+..|+..|+.+-+..|+..|+.+ +..+.+|.|+||-||.-.+.+||++|+ .++.+++..|..++||||.|+..|+..
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~-~~~n~DglTalhq~~id~~~e~v~~l~-e~ga~Vn~~d~e~wtPlhaaascg~~~  120 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASP-NLCNVDGLTALHQACIDDNLEMVKFLV-ENGANVNAQDNEGWTPLHAAASCGYLN  120 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCc-cccCCccchhHHHHHhcccHHHHHHHH-HhcCCccccccccCCcchhhcccccHH
Confidence            588899999999999999999999 899999999999999999999999999 688899999999999999999999999


Q ss_pred             HHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHH----------HHcCC----HHHHHHHHHcCCccccccCCCCC
Q 026423          111 IVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNA----------VRNKH----ENVVRMLVKKDRIPLGYLNNAEQ  176 (238)
Q Consensus       111 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a----------~~~~~----~~~~~~ll~~~~~~~~~~~~~g~  176 (238)
                      ++++|+..|+++......+.-..-...+....+.+-.+          ++.--    ..-+..++..|... ...+..|.
T Consensus       121 i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~-d~~~~rG~  199 (527)
T KOG0505|consen  121 IVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAEL-DARHARGA  199 (527)
T ss_pred             HHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccc-cccccccc
Confidence            99999999998765443322111111111112222111          11111    22334445566666 56666699


Q ss_pred             CHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCC
Q 026423          177 TPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  237 (238)
Q Consensus       177 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~  237 (238)
                      |.||+|+..|+.++.++|+..| .+++.+|..||||||.|+.=+.+++.++|+++|++++.
T Consensus       200 T~lHvAaa~Gy~e~~~lLl~ag-~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~  259 (527)
T KOG0505|consen  200 TALHVAAANGYTEVAALLLQAG-YSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDA  259 (527)
T ss_pred             hHHHHHHhhhHHHHHHHHHHhc-cCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccch
Confidence            9999999999999999999999 99999999999999999999999999999999999875

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.93  E-value=8.7e-25  Score=151.81  Aligned_cols=145  Identities=18%  Similarity=0.185  Sum_probs=94.7

Q ss_pred             hhhccccccCCCCchHHHHHHHcCCc----chHHHHHHcCccccccCCCCCCcHHHHHHHhCCHH---HHHHHHhhCccc
Q 026423           50 RMQNIFSTMSPRGNTVLHMAIRFRNH----KVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPA---IVSTILKYAPAI  122 (238)
Q Consensus        50 ~~~~~~~~~~~~g~t~L~~a~~~~~~----~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~---~~~~ll~~~~~~  122 (238)
                      ++.++ +..+..+.++||.||+.|+.    +++++|+ ..+..++.++..|+||||+|+..|+.+   ++++|+++|+++
T Consensus         9 ~~~~~-~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~-~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi   86 (166)
T PHA02743          9 NNLGA-VEIDEDEQNTFLRICRTGNIYELMEVAPFIS-GDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI   86 (166)
T ss_pred             cchHH-hhhccCCCcHHHHHHHcCCHHHHHHHHHHHh-hcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC
Confidence            45555 55566667777777777776    3444444 455566666777777777777766644   366777777654


Q ss_pred             cCCCCCCCcccccccC-CCCCcHHHHHHHcCCHHHHHHHHH-cCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCc
Q 026423          123 TNGTESEPESLLRITD-DEGNTPLHNAVRNKHENVVRMLVK-KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPE  200 (238)
Q Consensus       123 ~~~~~~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  200 (238)
                      .            .++ ..|.||||+|+..++.+++++|+. .|+++ +..+..|.||||+|+..++.+++++|+.+| +
T Consensus        87 n------------~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~-~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g-a  152 (166)
T PHA02743         87 N------------ARELGTGNTLLHIAASTKNYELAEWLCRQLGVNL-GAINYQHETAYHIAYKMRDRRMMEILRANG-A  152 (166)
T ss_pred             C------------CCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-C
Confidence            3            344 367777777777777777777774 56665 566667777777777777777777777776 6


Q ss_pred             ccccCCCCCC
Q 026423          201 SLNHRLPEEL  210 (238)
Q Consensus       201 ~~~~~~~~g~  210 (238)
                      +++.++..|.
T Consensus       153 ~~~~~~~~~~  162 (166)
T PHA02743        153 VCDDPLSIGL  162 (166)
T ss_pred             CCCCcccCCc
Confidence            6666665553

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=1.3e-24  Score=184.04  Aligned_cols=200  Identities=20%  Similarity=0.153  Sum_probs=152.8

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHhh--hhccccccCCCCchHHH-HHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHH
Q 026423           27 TMDHELLNVLRRGDEHQISLIAGR--MQNIFSTMSPRGNTVLH-MAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIA  103 (238)
Q Consensus        27 ~~~~~l~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~~g~t~L~-~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a  103 (238)
                      .....|+.|++.|+.+.++.++++  +.++ +..|..|.|||| .|+.+++.++++.|++ .+.    .+..|.||||.|
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~i-n~~d~~G~t~Lh~~A~~~~~~eiv~lLl~-~g~----~~~~G~T~Lh~A   89 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNI-NCPDRLGRSALFVAAIENENLELTELLLN-LSC----RGAVGDTLLHAI   89 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCC-CCcCccchhHHHHHHHhcChHHHHHHHHh-CCC----CCCcChHHHHHH
Confidence            345579999999999999999999  8888 888999999999 8888899999999995 443    567899999999


Q ss_pred             HHhCCHHHHHHHHhhCccccCCCCCC--CcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccC---------
Q 026423          104 ARVGDPAIVSTILKYAPAITNGTESE--PESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLN---------  172 (238)
Q Consensus       104 ~~~~~~~~~~~ll~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~---------  172 (238)
                      +. +..+.++.++.............  ...........|.||||+|+..|+.+++++|+++|+++ +.++         
T Consensus        90 ~~-~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv-~~~~~~~~~~~~~  167 (743)
T TIGR00870        90 SL-EYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASV-PARACGDFFVKSQ  167 (743)
T ss_pred             Hh-ccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CcCcCCchhhcCC
Confidence            87 33333333333221111000000  00001123457999999999999999999999999987 3331         


Q ss_pred             -----CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhc---------CcchhHHhhhccccc
Q 026423          173 -----NAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQ---------NYGEPMIFISLNKCL  235 (238)
Q Consensus       173 -----~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~---------~~~~~~~L~~~g~~~  235 (238)
                           ..|.||||.|+..|+.+++++|++.| ++++.+|..|+||+|+|+..+         ...+.+++++++++.
T Consensus       168 ~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~g-adin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~  243 (743)
T TIGR00870       168 GVDSFYHGESPLNAAACLGSPSIVALLSEDP-ADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKL  243 (743)
T ss_pred             CCCcccccccHHHHHHHhCCHHHHHHHhcCC-cchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence                 35899999999999999999999998 899999999999999999886         234667777776653

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.93  E-value=1.6e-24  Score=150.55  Aligned_cols=136  Identities=14%  Similarity=0.040  Sum_probs=81.5

Q ss_pred             cccccCCCCCCcHHHHHHHhCCH----HHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHH---HHHH
Q 026423           87 SLLRKNNWKGETPLHIAARVGDP----AIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN---VVRM  159 (238)
Q Consensus        87 ~~~~~~~~~g~~~l~~a~~~~~~----~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~---~~~~  159 (238)
                      .+.+..+..+.+++|.|++.|+.    +++++|.+.+..+.            ..+..|+||||+|+..|+.+   ++++
T Consensus        11 ~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~------------~~d~~g~t~Lh~Aa~~g~~~~~~~i~~   78 (166)
T PHA02743         11 LGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLH------------RYDHHGRQCTHMVAWYDRANAVMKIEL   78 (166)
T ss_pred             hHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhh------------ccCCCCCcHHHHHHHhCccCHHHHHHH
Confidence            33344445556666666666665    44445555554422            35556666666666665543   3566


Q ss_pred             HHHcCCccccccC-CCCCCHHHHHHHcCcHHHHHHHHh-cCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccC
Q 026423          160 LVKKDRIPLGYLN-NAEQTPLSIAIDSSLTDIACFIID-QRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLS  236 (238)
Q Consensus       160 ll~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~  236 (238)
                      |++.|+++ +.++ ..|.||||+|+..++.+++++|++ .| ++++.++..|+||||+|+..++.+++++|+++|++++
T Consensus        79 Ll~~Gadi-n~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~g-ad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~  155 (166)
T PHA02743         79 LVNMGADI-NARELGTGNTLLHIAASTKNYELAEWLCRQLG-VNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCD  155 (166)
T ss_pred             HHHcCCCC-CCCCCCCCCcHHHHHHHhCCHHHHHHHHhccC-CCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            66666665 4554 356666666666666666666664 34 6666666666666666666666666666666666655

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.92  E-value=7.3e-25  Score=174.06  Aligned_cols=195  Identities=21%  Similarity=0.202  Sum_probs=171.8

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHh
Q 026423           27 TMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARV  106 (238)
Q Consensus        27 ~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~  106 (238)
                      .+-|.||.|+.+|+..+++.|+++.+-+ +..+..|.+|||+|++.|+.++++.++.+ .+..+.....|.+|||.|+..
T Consensus        48 ~gfTalhha~Lng~~~is~llle~ea~l-dl~d~kg~~plhlaaw~g~~e~vkmll~q-~d~~na~~~e~~tplhlaaqh  125 (854)
T KOG0507|consen   48 SGFTLLHHAVLNGQNQISKLLLDYEALL-DLCDTKGILPLHLAAWNGNLEIVKMLLLQ-TDILNAVNIENETPLHLAAQH  125 (854)
T ss_pred             cchhHHHHHHhcCchHHHHHHhcchhhh-hhhhccCcceEEehhhcCcchHHHHHHhc-ccCCCcccccCcCccchhhhh
Confidence            3445899999999999999999988877 77789999999999999999999999954 478889999999999999999


Q ss_pred             CCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCcc-------ccccCCCCCCHH
Q 026423          107 GDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP-------LGYLNNAEQTPL  179 (238)
Q Consensus       107 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~-------~~~~~~~g~t~l  179 (238)
                      |+.+++++|++++++..            +.+..+.|++..|++.|..+++++|++..-..       ...++-.+-+|+
T Consensus       126 gh~dvv~~Ll~~~adp~------------i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~pl  193 (854)
T KOG0507|consen  126 GHLEVVFYLLKKNADPF------------IRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPL  193 (854)
T ss_pred             cchHHHHHHHhcCCCcc------------ccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCc
Confidence            99999999999998876            67889999999999999999999998762111       123455788999


Q ss_pred             HHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCC
Q 026423          180 SIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  237 (238)
Q Consensus       180 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~  237 (238)
                      |.|+++|+.++++.|+..| .++|.....| |+||.|+..|..+++++|++-|....+
T Consensus       194 Hlaakngh~~~~~~ll~ag-~din~~t~~g-talheaalcgk~evvr~ll~~gin~h~  249 (854)
T KOG0507|consen  194 HLAAKNGHVECMQALLEAG-FDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHI  249 (854)
T ss_pred             chhhhcchHHHHHHHHhcC-CCcccccccc-hhhhhHhhcCcchhhhHHHhhcccccc
Confidence            9999999999999999999 8998877665 999999999999999999999877654

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.92  E-value=5.1e-25  Score=174.90  Aligned_cols=193  Identities=24%  Similarity=0.285  Sum_probs=169.5

Q ss_pred             CHHHHHHHHcCCHHHHHHHHhhhh-------------ccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCC
Q 026423           29 DHELLNVLRRGDEHQISLIAGRMQ-------------NIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWK   95 (238)
Q Consensus        29 ~~~l~~A~~~~~~~~v~~Ll~~~~-------------~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~   95 (238)
                      .+.+..|++.|+++.+..|+++..             ++ +..|..|.|+||.||.+|+.++++.|+ .....++..+..
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~-n~qd~~gfTalhha~Lng~~~is~lll-e~ea~ldl~d~k   81 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSH-NLQDYSGFTLLHHAVLNGQNQISKLLL-DYEALLDLCDTK   81 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccc-cccCccchhHHHHHHhcCchHHHHHHh-cchhhhhhhhcc
Confidence            346899999999999999998521             23 566789999999999999999999999 577777888899


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCC
Q 026423           96 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE  175 (238)
Q Consensus        96 g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g  175 (238)
                      |..|||+|++.|+.++++.++.++..            ++..+..|.+|||.|+++|+.+++.+|+++|+++ ..++..+
T Consensus        82 g~~plhlaaw~g~~e~vkmll~q~d~------------~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp-~i~nns~  148 (854)
T KOG0507|consen   82 GILPLHLAAWNGNLEIVKMLLLQTDI------------LNAVNIENETPLHLAAQHGHLEVVFYLLKKNADP-FIRNNSK  148 (854)
T ss_pred             CcceEEehhhcCcchHHHHHHhcccC------------CCcccccCcCccchhhhhcchHHHHHHHhcCCCc-cccCccc
Confidence            99999999999999999999998843            3367889999999999999999999999999999 7899999


Q ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCcc--------cccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCC
Q 026423          176 QTPLSIAIDSSLTDIACFIIDQRPES--------LNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  237 (238)
Q Consensus       176 ~t~l~~a~~~~~~~~~~~Ll~~~~~~--------~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~  237 (238)
                      .|++.+|++.|..++++.|+... -+        -..++-.+-+|+|.|+++|+.++++.|++.|.++|.
T Consensus       149 ~t~ldlA~qfgr~~Vvq~ll~~~-~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~  217 (854)
T KOG0507|consen  149 ETVLDLASRFGRAEVVQMLLQKK-FPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINY  217 (854)
T ss_pred             ccHHHHHHHhhhhHHHHHHhhhc-cchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCccc
Confidence            99999999999999999999763 11        123445678999999999999999999999999985

>PHA02741 hypothetical protein; Provisional

Probab=99.92  E-value=5.6e-24  Score=148.47  Aligned_cols=138  Identities=19%  Similarity=0.186  Sum_probs=114.1

Q ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCC----HHHHHHHHHcCC
Q 026423           90 RKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH----ENVVRMLVKKDR  165 (238)
Q Consensus        90 ~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~ll~~~~  165 (238)
                      +.++..|.||||+|++.|+.++++.|+......      .....++.++..|.||||+|+..|+    .+++++|++.|+
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~------~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~ga   88 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGD------CHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGA   88 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccc------hhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence            356678999999999999999999886432000      0012244688899999999999998    588999999999


Q ss_pred             ccccccCC-CCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccc
Q 026423          166 IPLGYLNN-AEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKC  234 (238)
Q Consensus       166 ~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~  234 (238)
                      ++ +..+. .|.||||+|+..++.+++++|++..+++++.+|..|+|||++|+..++.+++++|++.++.
T Consensus        89 di-n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         89 DI-NAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CC-CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            88 66674 8999999999999999999999853389999999999999999999999999999988653

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.92  E-value=1.7e-24  Score=149.11  Aligned_cols=140  Identities=15%  Similarity=0.090  Sum_probs=110.4

Q ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCH---HHHHHHHHcCCc
Q 026423           90 RKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE---NVVRMLVKKDRI  166 (238)
Q Consensus        90 ~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~---~~~~~ll~~~~~  166 (238)
                      +.++..|.||||+|++.|+.  +.++...+.....     ....+...+..|.||||+|+..|+.   +++++|++.|++
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~-----~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad   83 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGV--TDLLAFKNAISDE-----NRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD   83 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcch-----hHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC
Confidence            34566788888888888873  2333222211000     0112234678999999999999986   468899999998


Q ss_pred             cccccC-CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCC
Q 026423          167 PLGYLN-NAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  237 (238)
Q Consensus       167 ~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~  237 (238)
                      + +..+ ..|.||||+|+..++.+++++|+...+++++.++..|.||||+|+..++.+++++|+++|++.++
T Consensus        84 i-n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~~  154 (154)
T PHA02736         84 I-NGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCKV  154 (154)
T ss_pred             c-cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            8 6776 58999999999999999999999863499999999999999999999999999999999999875

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.91  E-value=3.2e-23  Score=154.62  Aligned_cols=152  Identities=17%  Similarity=0.138  Sum_probs=125.3

Q ss_pred             CCCCCCHHHHHHHHcCCHHHHHHHHhhhhcccccc----CCCCchHHHHHHHcCCcchHHHHHHcCccccccC-CCCCCc
Q 026423           24 LPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTM----SPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKN-NWKGET   98 (238)
Q Consensus        24 ~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~----~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~g~~   98 (238)
                      +.....++|+.|+..|+.+++++|+++|+++ +..    +..|.||||+|+..++.+++++|+ ..|++++.+ +..|.|
T Consensus        29 d~~~~~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL-~~GADVN~~~~~~g~T  106 (300)
T PHA02884         29 NKICIANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLI-RYGADVNRYAEEAKIT  106 (300)
T ss_pred             CcCCCCHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCcCcccCCCCCC
Confidence            3455666899999999999999999999998 655    458999999999999999999999 577888875 457999


Q ss_pred             HHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCH
Q 026423           99 PLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTP  178 (238)
Q Consensus        99 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~  178 (238)
                      |||+|+..++.+++++|++.|+++.            .++..|.||||+|++.++.+++..+...      ..+..+.+|
T Consensus       107 pLh~Aa~~~~~eivklLL~~GAdin------------~kd~~G~TpL~~A~~~~~~~~~~~~~~~------~~~~~~~~~  168 (300)
T PHA02884        107 PLYISVLHGCLKCLEILLSYGADIN------------IQTNDMVTPIELALMICNNFLAFMICDN------EISNFYKHP  168 (300)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCC------------CCCCCCCCHHHHHHHhCChhHHHHhcCC------cccccccCh
Confidence            9999999999999999999998765            5778899999999998888877655432      235667788


Q ss_pred             HHHHHHcCcHHHHHHHHhcC
Q 026423          179 LSIAIDSSLTDIACFIIDQR  198 (238)
Q Consensus       179 l~~a~~~~~~~~~~~Ll~~~  198 (238)
                      .+++   ++.+++++|+.++
T Consensus       169 ~~~~---~n~ei~~~Lish~  185 (300)
T PHA02884        169 KKIL---INFDILKILVSHF  185 (300)
T ss_pred             hhhh---ccHHHHHHHHHHH
Confidence            8865   3688999998887

>PHA02741 hypothetical protein; Provisional

Probab=99.91  E-value=4.2e-23  Score=144.05  Aligned_cols=130  Identities=19%  Similarity=0.309  Sum_probs=114.0

Q ss_pred             cccCCCCchHHHHHHHcCCcchHHHHHHc-----CccccccCCCCCCcHHHHHHHhCC----HHHHHHHHhhCccccCCC
Q 026423           56 STMSPRGNTVLHMAIRFRNHKVIPEILRR-----RDSLLRKNNWKGETPLHIAARVGD----PAIVSTILKYAPAITNGT  126 (238)
Q Consensus        56 ~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~-----~~~~~~~~~~~g~~~l~~a~~~~~----~~~~~~ll~~~~~~~~~~  126 (238)
                      +..+..|.||||+|+..|+.++++.|+..     .+.+++.++..|.||||+|+..++    .+++++|++.|+++.   
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin---   91 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADIN---   91 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCC---
Confidence            45677899999999999999999988642     357788999999999999999998    588999999987754   


Q ss_pred             CCCCcccccccCC-CCCcHHHHHHHcCCHHHHHHHHHc-CCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 026423          127 ESEPESLLRITDD-EGNTPLHNAVRNKHENVVRMLVKK-DRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQR  198 (238)
Q Consensus       127 ~~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  198 (238)
                               .++. .|.||||+|+..++.+++++|+.. |+++ +..+..|.|||++|+..++.+++++|++.+
T Consensus        92 ---------~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~-~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741         92 ---------AQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDL-HFCNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             ---------CCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence                     4564 899999999999999999999984 7776 788999999999999999999999999876

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.90  E-value=8.5e-23  Score=152.37  Aligned_cols=154  Identities=16%  Similarity=0.129  Sum_probs=128.0

Q ss_pred             ccCCCCch-HHHHHHHcCCcchHHHHHHcCccccccC----CCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCc
Q 026423           57 TMSPRGNT-VLHMAIRFRNHKVIPEILRRRDSLLRKN----NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPE  131 (238)
Q Consensus        57 ~~~~~g~t-~L~~a~~~~~~~~~~~Ll~~~~~~~~~~----~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~  131 (238)
                      ..|..|.| +||.|+..++.+++++|+ ..|++++.+    +..|.||||+|+..++.+++++|+++|+++.        
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL-~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN--------   97 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAIL-KLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVN--------   97 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHH-HCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcC--------
Confidence            34555555 567777889999999999 577778876    4589999999999999999999999998865        


Q ss_pred             cccccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCC
Q 026423          132 SLLRIT-DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEEL  210 (238)
Q Consensus       132 ~~~~~~-~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~  210 (238)
                          .. +..|.||||.|+..++.+++++|+..|+++ +..+..|.||+|+|++.++.+++..+..   ..   .+..+.
T Consensus        98 ----~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdi-n~kd~~G~TpL~~A~~~~~~~~~~~~~~---~~---~~~~~~  166 (300)
T PHA02884         98 ----RYAEEAKITPLYISVLHGCLKCLEILLSYGADI-NIQTNDMVTPIELALMICNNFLAFMICD---NE---ISNFYK  166 (300)
T ss_pred             ----cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHhCChhHHHHhcC---Cc---cccccc
Confidence                33 457999999999999999999999999998 7889999999999999888888766652   22   355667


Q ss_pred             cHHHHHHHhcCcchhHHhhhccc
Q 026423          211 TLLHSAVMRQNYGEPMIFISLNK  233 (238)
Q Consensus       211 t~l~~A~~~~~~~~~~~L~~~g~  233 (238)
                      +|++++   ++.|++++|++|+.
T Consensus       167 ~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        167 HPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             Chhhhh---ccHHHHHHHHHHHH
Confidence            888865   46899999999987

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.89  E-value=6.9e-23  Score=150.42  Aligned_cols=158  Identities=20%  Similarity=0.303  Sum_probs=137.2

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHc-----CCcchHHHHHHcCccccccCCCCCCcHHH
Q 026423           27 TMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRF-----RNHKVIPEILRRRDSLLRKNNWKGETPLH  101 (238)
Q Consensus        27 ~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~-----~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~  101 (238)
                      .+.|+|||++.++++++|+.||+.|.--.+..++-|+||+++++..     .+.++|..|+ +.+...-.-...|+|+|+
T Consensus       267 NGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF-~mgnVNaKAsQ~gQTALM  345 (452)
T KOG0514|consen  267 NGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLF-KMGDVNAKASQHGQTALM  345 (452)
T ss_pred             CCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHH-hccCcchhhhhhcchhhh
Confidence            3555899999999999999999998743388999999999998864     5567899998 566544444568999999


Q ss_pred             HHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHH
Q 026423          102 IAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI  181 (238)
Q Consensus       102 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~  181 (238)
                      +|+.+|+.++++.|+..|++++            .+|.+|.|+|.+|+.+|+.+++++|+..........|.+|.|+|.+
T Consensus       346 LAVSHGr~d~vk~LLacgAdVN------------iQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~I  413 (452)
T KOG0514|consen  346 LAVSHGRVDMVKALLACGADVN------------IQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSI  413 (452)
T ss_pred             hhhhcCcHHHHHHHHHccCCCc------------cccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhh
Confidence            9999999999999999998855            7999999999999999999999999988555557899999999999


Q ss_pred             HHHcCcHHHHHHHHhc
Q 026423          182 AIDSSLTDIACFIIDQ  197 (238)
Q Consensus       182 a~~~~~~~~~~~Ll~~  197 (238)
                      |...|+.++.-+|-.+
T Consensus       414 Aleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  414 ALEAGHREIAVMLYAH  429 (452)
T ss_pred             HHhcCchHHHHHHHHH
Confidence            9999999998888644

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.89  E-value=1.1e-22  Score=140.14  Aligned_cols=132  Identities=20%  Similarity=0.225  Sum_probs=105.8

Q ss_pred             cccCCCCchHHHHHHHcCCcchHHHHHH------cCccccccCCCCCCcHHHHHHHhCCH---HHHHHHHhhCccccCCC
Q 026423           56 STMSPRGNTVLHMAIRFRNHKVIPEILR------RRDSLLRKNNWKGETPLHIAARVGDP---AIVSTILKYAPAITNGT  126 (238)
Q Consensus        56 ~~~~~~g~t~L~~a~~~~~~~~~~~Ll~------~~~~~~~~~~~~g~~~l~~a~~~~~~---~~~~~ll~~~~~~~~~~  126 (238)
                      +..+..|.||||+|+..|+.  +..+..      ..+...+.++..|.||||+|+..++.   +++++|++.|+++.   
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin---   85 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADIN---   85 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcc---
Confidence            55678899999999999983  222221      11223445688899999999999886   46889999997754   


Q ss_pred             CCCCcccccccC-CCCCcHHHHHHHcCCHHHHHHHHHc-CCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccc
Q 026423          127 ESEPESLLRITD-DEGNTPLHNAVRNKHENVVRMLVKK-DRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLN  203 (238)
Q Consensus       127 ~~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~  203 (238)
                               .++ ..|+||||+|+..++.+++++|+.. |+++ +..+..|.||||+|+..|+.+++++|+..| ++.+
T Consensus        86 ---------~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~-n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~g-a~~~  153 (154)
T PHA02736         86 ---------GKERVFGNTPLHIAVYTQNYELATWLCNQPGVNM-EILNYAFKTPYYVACERHDAKMMNILRAKG-AQCK  153 (154)
T ss_pred             ---------ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC-ccccCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCC
Confidence                     455 4899999999999999999999985 7776 788999999999999999999999999988 6543

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.89  E-value=4e-22  Score=131.99  Aligned_cols=144  Identities=22%  Similarity=0.191  Sum_probs=120.2

Q ss_pred             hHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCc
Q 026423           64 TVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNT  143 (238)
Q Consensus        64 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (238)
                      -.+.||+..+.+..|+.||+..+.-+|.+|.+|+||||-|+.+|+.++++.|+..|++..            .+...|+|
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~------------a~T~~GWT  132 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKE------------AKTNEGWT  132 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcc------------cccccCcc
Confidence            356789989999999999988888889999999999999999999999999999888865            46778999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCc-HHHHHHHHhcCCcccccCCCCCCcHHHHHHHhc
Q 026423          144 PLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSL-TDIACFIIDQRPESLNHRLPEELTLLHSAVMRQ  220 (238)
Q Consensus       144 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~-~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~  220 (238)
                      |||.||..++.+++.+|+++|+++ +....-..||||+|+...+ ...+++|+-........++..+.||+++|-+.+
T Consensus       133 PLhSAckWnN~~va~~LLqhgaDV-nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  133 PLHSACKWNNFEVAGRLLQHGADV-NAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             chhhhhcccchhHHHHHHhccCcc-cccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            999999999999999999999988 6777777899999887544 566777765555777888888889999887663

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.88  E-value=1.1e-22  Score=156.20  Aligned_cols=202  Identities=16%  Similarity=0.159  Sum_probs=157.0

Q ss_pred             hhhhccccCCCCCCCCCCCCCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCcc
Q 026423            8 MTEFGTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDS   87 (238)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~   87 (238)
                      ++.+|.+++...      ..+-|+||.++.-.+.++|++|++.|+++ +..|..|+||||.|+.+|+..++.+|+ +.++
T Consensus        59 ll~~ga~~~~~n------~DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~~~i~~~li-~~gA  130 (527)
T KOG0505|consen   59 LLNRGASPNLCN------VDGLTALHQACIDDNLEMVKFLVENGANV-NAQDNEGWTPLHAAASCGYLNIVEYLI-QHGA  130 (527)
T ss_pred             HhccCCCccccC------CccchhHHHHHhcccHHHHHHHHHhcCCc-cccccccCCcchhhcccccHHHHHHHH-Hhhh
Confidence            445555554433      33455899999999999999999999999 999999999999999999999999999 6888


Q ss_pred             ccccCCCCCCcHHHHHHHhCCHHHHHHHHhh-CccccCCCCCC-------------CcccccccCCCCCcHHHHHHHcCC
Q 026423           88 LLRKNNWKGETPLHIAARVGDPAIVSTILKY-APAITNGTESE-------------PESLLRITDDEGNTPLHNAVRNKH  153 (238)
Q Consensus        88 ~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~a~~~~~  153 (238)
                      ++...+..|..|+..+......+++..-... +.++...-..+             .....+..+..|.|.||.|+..|.
T Consensus       131 ~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy  210 (527)
T KOG0505|consen  131 NLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGY  210 (527)
T ss_pred             hhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhH
Confidence            8888888888887664433332222222211 11110000000             012233455669999999999999


Q ss_pred             HHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHh
Q 026423          154 ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMR  219 (238)
Q Consensus       154 ~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~  219 (238)
                      .++.++|+..|.++ +.+|.+|+||||.|+-=|..++.+.|+++| ++.+.....|.+|+.+|..-
T Consensus       211 ~e~~~lLl~ag~~~-~~~D~dgWtPlHAAA~Wg~~~~~elL~~~g-a~~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  211 TEVAALLLQAGYSV-NIKDYDGWTPLHAAAHWGQEDACELLVEHG-ADMDAKTKMGETPLDVADEE  274 (527)
T ss_pred             HHHHHHHHHhccCc-ccccccCCCcccHHHHhhhHhHHHHHHHhh-cccchhhhcCCCCccchhhh
Confidence            99999999999998 799999999999999999999999999999 99999999999999988753

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.87  E-value=4e-21  Score=127.27  Aligned_cols=144  Identities=23%  Similarity=0.271  Sum_probs=125.6

Q ss_pred             HHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHH
Q 026423           31 ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPA  110 (238)
Q Consensus        31 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~  110 (238)
                      .+.+|+..+..+.|+.|++..++..+.+|.+|+||||-|+.+|+.++++.|+ ..+++.+.+...|+||||.||.=++.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll-~~gAn~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELL-LSGANKEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHH-HccCCcccccccCccchhhhhcccchh
Confidence            4889999999999999999999988999999999999999999999999999 677788999999999999999999999


Q ss_pred             HHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCC-HHHHHHHHHcCCccccccCCCCCCHHHHHHHcCc
Q 026423          111 IVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH-ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSL  187 (238)
Q Consensus       111 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~-~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  187 (238)
                      ++..|+++|++++            .......||||.|+...+ ...+.+|+.........++..+.||+.+|-+.+-
T Consensus       145 va~~LLqhgaDVn------------A~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  145 VAGRLLQHGADVN------------AQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             HHHHHHhccCccc------------ccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhh
Confidence            9999999998865            577889999999987655 5566777655333335678889999999987653

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.87  E-value=2.9e-21  Score=155.21  Aligned_cols=200  Identities=17%  Similarity=0.156  Sum_probs=167.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhh---------hccccccCCCCchHHHHHHHc---CCcchHHHHHHcCcccccc----CC
Q 026423           30 HELLNVLRRGDEHQISLIAGRM---------QNIFSTMSPRGNTVLHMAIRF---RNHKVIPEILRRRDSLLRK----NN   93 (238)
Q Consensus        30 ~~l~~A~~~~~~~~v~~Ll~~~---------~~~~~~~~~~g~t~L~~a~~~---~~~~~~~~Ll~~~~~~~~~----~~   93 (238)
                      .++..|...+..+.+..++..+         .++ +.....|.|+||.|..+   ++.+++..|++..+..++.    -.
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~-~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~ee  181 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKL-NERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEE  181 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhcc-ccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHh
Confidence            4688899999999888888765         344 55678899999999974   5558899999766544332    34


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCC-----------cccccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 026423           94 WKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP-----------ESLLRITDDEGNTPLHNAVRNKHENVVRMLVK  162 (238)
Q Consensus        94 ~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~  162 (238)
                      ..|.||||+|+.+.+.++|.+|++.|++++......-           .....-.-+.|+.||..|+..++.+++++|++
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~  261 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA  261 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence            5799999999999999999999999999875433221           11222234679999999999999999999999


Q ss_pred             cCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcc--cccCCCCCCcHHHHHHHhcCcchhHHhhhcc
Q 026423          163 KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPES--LNHRLPEELTLLHSAVMRQNYGEPMIFISLN  232 (238)
Q Consensus       163 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~--~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g  232 (238)
                      +|+++ +..|..|+|.||..+..-..+|..++++.| ++  ...+|+.|.|||.+|++-|..++.+.+++..
T Consensus       262 ~gAd~-~aqDS~GNTVLH~lVi~~~~~My~~~L~~g-a~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~  331 (782)
T KOG3676|consen  262 HGADP-NAQDSNGNTVLHMLVIHFVTEMYDLALELG-ANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERR  331 (782)
T ss_pred             cCCCC-CccccCCChHHHHHHHHHHHHHHHHHHhcC-CCccccccccCCCChHHHHHHhhhHHHHHHHHHhh
Confidence            99999 899999999999999998899999999999 77  8889999999999999999999999999873

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.86  E-value=5e-22  Score=163.91  Aligned_cols=217  Identities=17%  Similarity=0.210  Sum_probs=170.9

Q ss_pred             CCCCCCCCCCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCc
Q 026423           19 TMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGET   98 (238)
Q Consensus        19 ~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~   98 (238)
                      .++..++...+++|..|+..|+.+.++.|+.+|+++ ...|+.|.+||-+|+..||..+|+.|++.+...--..|..+.|
T Consensus       748 ~id~~Te~n~~t~LT~acaggh~e~vellv~rgani-ehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt  826 (2131)
T KOG4369|consen  748 VIDPLTEPNIKTNLTSACAGGHREEVELLVVRGANI-EHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDT  826 (2131)
T ss_pred             eeccccCccccccccccccCccHHHHHHHHHhcccc-cccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCc
Confidence            355666777888999999999999999999999999 8889999999999999999999999997777666677888889


Q ss_pred             HHHHHHHhCCHHHHHHHHhhCccccCCCCCCC---------------------ccccc--ccCCCCCcHHHHHHHcCCHH
Q 026423           99 PLHIAARVGDPAIVSTILKYAPAITNGTESEP---------------------ESLLR--ITDDEGNTPLHNAVRNKHEN  155 (238)
Q Consensus        99 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~---------------------~~~~~--~~~~~~~~~l~~a~~~~~~~  155 (238)
                      +|.+||..|+.+++++|+..|++-.....+..                     ..-++  .-.+.|-.||..|...|+..
T Consensus       827 ~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~  906 (2131)
T KOG4369|consen  827 MLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQA  906 (2131)
T ss_pred             eEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccH
Confidence            99999999999999999988876543222111                     00011  12344556666666666666


Q ss_pred             HHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhccccc
Q 026423          156 VVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCL  235 (238)
Q Consensus       156 ~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~  235 (238)
                      ..+.|++.|.++......+-+|+|-+|+..|+.+++.+|+... +++..+-+.|.|||+.++..|.+|+-++|+..|+|+
T Consensus       907 at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~-anvehRaktgltplme~AsgGyvdvg~~li~~gad~  985 (2131)
T KOG4369|consen  907 ATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQ-ANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADT  985 (2131)
T ss_pred             HHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHh-hhhhhhcccCCcccchhhcCCccccchhhhhccccc
Confidence            6666666666664444456677888888888888888888877 888888899999999999999999999999999998


Q ss_pred             CC
Q 026423          236 SI  237 (238)
Q Consensus       236 ~~  237 (238)
                      +.
T Consensus       986 na  987 (2131)
T KOG4369|consen  986 NA  987 (2131)
T ss_pred             cc
Confidence            74

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.85  E-value=1.6e-21  Score=139.48  Aligned_cols=113  Identities=27%  Similarity=0.364  Sum_probs=66.2

Q ss_pred             cccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCccccc
Q 026423           56 STMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLR  135 (238)
Q Consensus        56 ~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~  135 (238)
                      +.-|..|.+||||||+.|+..+++.|+ ..++.+|..+....||||+|+..|+.++++.|+++.++++            
T Consensus        28 n~gddhgfsplhwaakegh~aivemll-~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvn------------   94 (448)
T KOG0195|consen   28 NVGDDHGFSPLHWAAKEGHVAIVEMLL-SRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVN------------   94 (448)
T ss_pred             ccccccCcchhhhhhhcccHHHHHHHH-hcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccc------------
Confidence            445555666666666666666666666 4555555555555566666666666666666665554433            


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHH
Q 026423          136 ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA  182 (238)
Q Consensus       136 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a  182 (238)
                      ..+..|.|||||||..|...+.+-|+++|+.. +.-+.+|.||+..|
T Consensus        95 avnehgntplhyacfwgydqiaedli~~ga~v-~icnk~g~tpldka  140 (448)
T KOG0195|consen   95 AVNEHGNTPLHYACFWGYDQIAEDLISCGAAV-NICNKKGMTPLDKA  140 (448)
T ss_pred             hhhccCCCchhhhhhhcHHHHHHHHHhcccee-eecccCCCCchhhh
Confidence            45555666666666666666666666666555 45556666666554

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.85  E-value=1.1e-20  Score=117.94  Aligned_cols=88  Identities=19%  Similarity=0.223  Sum_probs=80.9

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcch
Q 026423          145 LHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGE  224 (238)
Q Consensus       145 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~  224 (238)
                      ||+|++.|+.+++++|++.+.+.. .    |.||+|+|+..|+.+++++|++.| ++++.+|.+|+||||+|+..++.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~-~----~~~~l~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADIN-L----GNTALHYAAENGNLEIVKLLLENG-ADINSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTT-S----SSBHHHHHHHTTTHHHHHHHHHTT-TCTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCC-C----CCCHHHHHHHcCCHHHHHHHHHhc-ccccccCCCCCCHHHHHHHcCCHHH
Confidence            789999999999999999887662 2    899999999999999999999999 9999999999999999999999999


Q ss_pred             hHHhhhcccccCCC
Q 026423          225 PMIFISLNKCLSIV  238 (238)
Q Consensus       225 ~~~L~~~g~~~~~~  238 (238)
                      +++|+++|++++.+
T Consensus        75 ~~~Ll~~g~~~~~~   88 (89)
T PF12796_consen   75 VKLLLEHGADVNIR   88 (89)
T ss_dssp             HHHHHHTTT-TTSS
T ss_pred             HHHHHHcCCCCCCc
Confidence            99999999999864

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.82  E-value=6.8e-19  Score=116.99  Aligned_cols=123  Identities=27%  Similarity=0.424  Sum_probs=83.2

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccC
Q 026423           93 NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLN  172 (238)
Q Consensus        93 ~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~  172 (238)
                      +..|.||||+|+..++.+++++|++.+....            ..+..|.+|+|.|+..++.+++++|++.++.. +..+
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~------------~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~   70 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADVN------------AKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARD   70 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCCC------------ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccC
Confidence            3456677777777777777777776664431            35566667777777777777777777766544 4556


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhh
Q 026423          173 NAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFI  229 (238)
Q Consensus       173 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  229 (238)
                      ..|.||+|+|+..++.+++++|++.+ .+.+..+..|.||+++|...++.+++++|+
T Consensus        71 ~~~~~~l~~a~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          71 KDGNTPLHLAARNGNLDVVKLLLKHG-ADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            66777777777777777777777766 666666677777777777777777776653

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.81  E-value=7.2e-19  Score=109.69  Aligned_cols=89  Identities=27%  Similarity=0.382  Sum_probs=79.2

Q ss_pred             HHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHH
Q 026423          100 LHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPL  179 (238)
Q Consensus       100 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l  179 (238)
                      ||+|++.|+.+++++|++.+.++.               . |.||||+|+..|+.+++++|++.|+++ +..+..|+|||
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~---------------~-~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L   63 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADIN---------------L-GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTAL   63 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTT---------------S-SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCC---------------C-CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHH
Confidence            799999999999999999885532               1 889999999999999999999999988 78889999999


Q ss_pred             HHHHHcCcHHHHHHHHhcCCcccccCC
Q 026423          180 SIAIDSSLTDIACFIIDQRPESLNHRL  206 (238)
Q Consensus       180 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~  206 (238)
                      |+|+..|+.+++++|+++| ++++.+|
T Consensus        64 ~~A~~~~~~~~~~~Ll~~g-~~~~~~n   89 (89)
T PF12796_consen   64 HYAAENGNLEIVKLLLEHG-ADVNIRN   89 (89)
T ss_dssp             HHHHHTTHHHHHHHHHHTT-T-TTSS-
T ss_pred             HHHHHcCCHHHHHHHHHcC-CCCCCcC
Confidence            9999999999999999998 8888765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.80  E-value=2.3e-18  Score=114.42  Aligned_cols=124  Identities=29%  Similarity=0.456  Sum_probs=100.8

Q ss_pred             cCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCccccccc
Q 026423           58 MSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRIT  137 (238)
Q Consensus        58 ~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~  137 (238)
                      .+..|.||||+|+..++.+++++|+ ..+...+..+..|.+|+|.|+..++.+++++|++.++.+.            ..
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li-~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~------------~~   69 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLL-ENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVN------------AR   69 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHH-HcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc------------cc
Confidence            3567889999999988888888888 4555557777888899999999888899999988875432            45


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHH
Q 026423          138 DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFII  195 (238)
Q Consensus       138 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  195 (238)
                      +..+.+|+|+|++.++.+++++|++.+... ...+..|.||+++|...++.+++++|+
T Consensus        70 ~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          70 DKDGNTPLHLAARNGNLDVVKLLLKHGADV-NARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            677889999999999999999998887665 567788889999998888888888774

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.80  E-value=8.2e-20  Score=130.84  Aligned_cols=155  Identities=23%  Similarity=0.180  Sum_probs=119.7

Q ss_pred             HHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHH
Q 026423           66 LHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL  145 (238)
Q Consensus        66 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  145 (238)
                      ++|+- .|+.--|+.-|+....+.|..|..|.+|||+|++.|+..+++.|+.+|+.++            ..+....|||
T Consensus         5 f~wcr-egna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn------------~tnmgddtpl   71 (448)
T KOG0195|consen    5 FGWCR-EGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVN------------STNMGDDTPL   71 (448)
T ss_pred             hhhhh-cCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccc------------cccCCCCcch
Confidence            44444 4554445544557777888888899999999999999999999999987755            5667778899


Q ss_pred             HHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchh
Q 026423          146 HNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEP  225 (238)
Q Consensus       146 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~  225 (238)
                      |+|+.+|+.++++.|++..+++ +..+..|+|||||||.-|+..+.+-|+..| +.+++.++.|.||++.|.-.-..-+.
T Consensus        72 hlaaahghrdivqkll~~kadv-navnehgntplhyacfwgydqiaedli~~g-a~v~icnk~g~tpldkakp~l~~~l~  149 (448)
T KOG0195|consen   72 HLAAAHGHRDIVQKLLSRKADV-NAVNEHGNTPLHYACFWGYDQIAEDLISCG-AAVNICNKKGMTPLDKAKPMLKNTLL  149 (448)
T ss_pred             hhhhhcccHHHHHHHHHHhccc-chhhccCCCchhhhhhhcHHHHHHHHHhcc-ceeeecccCCCCchhhhchHHHHHHH
Confidence            9999999999999999888887 788888999999999989999999999888 88899999999999877543333333


Q ss_pred             HHhhhccccc
Q 026423          226 MIFISLNKCL  235 (238)
Q Consensus       226 ~~L~~~g~~~  235 (238)
                      +.--++|-.+
T Consensus       150 e~aek~gq~~  159 (448)
T KOG0195|consen  150 EIAEKHGQSP  159 (448)
T ss_pred             HHHHHhCCCC
Confidence            3333444433

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.79  E-value=8.1e-20  Score=151.12  Aligned_cols=205  Identities=17%  Similarity=0.144  Sum_probs=122.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHH
Q 026423           31 ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPA  110 (238)
Q Consensus        31 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~  110 (238)
                      +|..|+-.|+..+|+.|+++.+++.-..|+.+.|+|-+||..|+.+++..|| ..+++-..++...+|||.+|...|..+
T Consensus       793 plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl-~~gankehrnvsDytPlsla~Sggy~~  871 (2131)
T KOG4369|consen  793 PLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLL-NAGANKEHRNVSDYTPLSLARSGGYTK  871 (2131)
T ss_pred             hhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHH-HhhccccccchhhcCchhhhcCcchHH
Confidence            5666666667777777776666664445566666666666666666666666 444444555555566666666666666


Q ss_pred             HHHHHHhhCccccCCCCCC-----------------------------------C----------------------ccc
Q 026423          111 IVSTILKYAPAITNGTESE-----------------------------------P----------------------ESL  133 (238)
Q Consensus       111 ~~~~ll~~~~~~~~~~~~~-----------------------------------~----------------------~~~  133 (238)
                      +|+.|+..|+.+.....+.                                   .                      +..
T Consensus       872 iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~an  951 (2131)
T KOG4369|consen  872 IIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQAN  951 (2131)
T ss_pred             HHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhh
Confidence            6666666665544333222                                   1                      111


Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccc-cCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcH
Q 026423          134 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGY-LNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTL  212 (238)
Q Consensus       134 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  212 (238)
                      ++.+-..|.|||.-++..|.+++=+.|+..|++.... ......|+|-.++..|+...++.|+... +.++.++++|.|+
T Consensus       952 vehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~-atv~v~NkkG~T~ 1030 (2131)
T KOG4369|consen  952 VEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGD-ATVRVPNKKGCTV 1030 (2131)
T ss_pred             hhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCc-cceecccCCCCcc
Confidence            2223445555555555555555555555555554211 1112334444555555555555555433 5567888889999


Q ss_pred             HHHHHHhcCcchhHHhhhcccccCC
Q 026423          213 LHSAVMRQNYGEPMIFISLNKCLSI  237 (238)
Q Consensus       213 l~~A~~~~~~~~~~~L~~~g~~~~~  237 (238)
                      |..|+.-|....+.+|+++++|.+.
T Consensus      1031 Lwla~~Gg~lss~~il~~~~ad~d~ 1055 (2131)
T KOG4369|consen 1031 LWLASAGGALSSCPILVSSVADADQ 1055 (2131)
T ss_pred             cchhccCCccccchHHhhcccChhh
Confidence            9999999999999999999988763

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.78  E-value=3.4e-18  Score=137.83  Aligned_cols=158  Identities=22%  Similarity=0.287  Sum_probs=134.2

Q ss_pred             CCCCHHHHHHHHc---CCHHHHHHHHhhhhccc----cccCCCCchHHHHHHHcCCcchHHHHHHcCccccccC------
Q 026423           26 TTMDHELLNVLRR---GDEHQISLIAGRMQNIF----STMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKN------   92 (238)
Q Consensus        26 ~~~~~~l~~A~~~---~~~~~v~~Ll~~~~~~~----~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~------   92 (238)
                      ..+.|.||.|+-+   +.-++++.|++.-..+.    ......|.||||.|+.+.+.++|.+|+. .+++++.+      
T Consensus       141 a~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~-~gADV~aRa~G~FF  219 (782)
T KOG3676|consen  141 ATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLA-AGADVHARACGAFF  219 (782)
T ss_pred             chhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHH-cCCchhhHhhcccc
Confidence            4567899999984   34478999998765432    2234679999999999999999999995 44444331      


Q ss_pred             -----------------CCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHH
Q 026423           93 -----------------NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN  155 (238)
Q Consensus        93 -----------------~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~  155 (238)
                                       -..|+.||.+|+-.++.+++++|+++++++.            .+|+.|+|.||..+.+-..+
T Consensus       220 ~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~------------aqDS~GNTVLH~lVi~~~~~  287 (782)
T KOG3676|consen  220 CPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPN------------AQDSNGNTVLHMLVIHFVTE  287 (782)
T ss_pred             CcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCC------------ccccCCChHHHHHHHHHHHH
Confidence                             2368899999999999999999999998866            79999999999999999999


Q ss_pred             HHHHHHHcCCc--cccccCCCCCCHHHHHHHcCcHHHHHHHHhc
Q 026423          156 VVRMLVKKDRI--PLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ  197 (238)
Q Consensus       156 ~~~~ll~~~~~--~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  197 (238)
                      +.+++++.|+.  . ...|..|.|||.+|++.|+.+|.+.+++.
T Consensus       288 My~~~L~~ga~~l~-~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  288 MYDLALELGANALE-HVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHHHHhcCCCccc-cccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            99999999998  5 67899999999999999999999999988

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.70  E-value=1.9e-15  Score=110.84  Aligned_cols=133  Identities=25%  Similarity=0.315  Sum_probs=114.1

Q ss_pred             cccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCC-----HHHHHHHH
Q 026423           87 SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH-----ENVVRMLV  161 (238)
Q Consensus        87 ~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~-----~~~~~~ll  161 (238)
                      ......+..+.++++.++..+..+++++++..+.++.            .++..|.||+|+|+..++     .++++.|+
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll  131 (235)
T COG0666          64 RHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVN------------AKDADGDTPLHLAALNGNPPEGNIEVAKLLL  131 (235)
T ss_pred             cccccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcc------------cccCCCCcHHHHHHhcCCcccchHHHHHHHH
Confidence            3344555668889999999999999988888887753            678899999999999998     89999999


Q ss_pred             HcCC--ccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcc
Q 026423          162 KKDR--IPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN  232 (238)
Q Consensus       162 ~~~~--~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g  232 (238)
                      +.|+  +.....+..|.||+|+|+..|+.++++.|++.+ ++++..+..|.|+++.|...++.++++.+++.+
T Consensus       132 ~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         132 EAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAG-ADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             HcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcC-CCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            9999  565777899999999999999999999999998 888888999999999999999999999998864

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.67  E-value=4.8e-16  Score=92.35  Aligned_cols=103  Identities=16%  Similarity=0.176  Sum_probs=89.0

Q ss_pred             HHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCH
Q 026423           99 PLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTP  178 (238)
Q Consensus        99 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~  178 (238)
                      -+.|++++|..+-|+-.+..|.+.+             ....|++|||+|+-.|+.+++++|+..|+++ +.+|..|-||
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn-------------~~~ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITP   70 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVN-------------EIYGGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITP   70 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHH-------------HHhCCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcH
Confidence            4667888999999988888875543             2348999999999999999999999999998 7899999999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHH
Q 026423          179 LSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSA  216 (238)
Q Consensus       179 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A  216 (238)
                      |..|++.|+.++|++|+..| ++-..+...|.+.+..+
T Consensus        71 LLsAvwEGH~~cVklLL~~G-Adrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   71 LLSAVWEGHRDCVKLLLQNG-ADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHHhhHHHHHHHHHcC-cccceeCCCchhHHhhc
Confidence            99999999999999999999 88888888887776644

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.67  E-value=3.7e-16  Score=92.84  Aligned_cols=90  Identities=18%  Similarity=0.245  Sum_probs=83.0

Q ss_pred             HHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHH
Q 026423           31 ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPA  110 (238)
Q Consensus        31 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~  110 (238)
                      .+.+++++|..+.|+.....|.++ +... .|.+|||+|+-.|+.+++.+|+ .-+++++.+|+.|.|||-.|++.|+.+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nV-n~~~-ggR~plhyAAD~GQl~ilefli-~iGA~i~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNV-NEIY-GGRTPLHYAADYGQLSILEFLI-SIGANIQDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccH-HHHh-CCcccchHhhhcchHHHHHHHH-HhccccCCccccCCcHHHHHHHHhhHH
Confidence            589999999999999999999888 4433 7999999999999999999999 788899999999999999999999999


Q ss_pred             HHHHHHhhCcccc
Q 026423          111 IVSTILKYAPAIT  123 (238)
Q Consensus       111 ~~~~ll~~~~~~~  123 (238)
                      +|++|+++|++-.
T Consensus        82 cVklLL~~GAdrt   94 (117)
T KOG4214|consen   82 CVKLLLQNGADRT   94 (117)
T ss_pred             HHHHHHHcCcccc
Confidence            9999999998754

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.62  E-value=2.4e-14  Score=104.99  Aligned_cols=130  Identities=25%  Similarity=0.396  Sum_probs=116.3

Q ss_pred             cccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCC-----HHHHHHHHhhCc--cccCCCCC
Q 026423           56 STMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGD-----PAIVSTILKYAP--AITNGTES  128 (238)
Q Consensus        56 ~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~-----~~~~~~ll~~~~--~~~~~~~~  128 (238)
                      ...+..+.++++.++..+..+++.+++ ..+.+++.++..|.||||+|+..++     .++++.|++.++  ...     
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~-----  140 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLL-ASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVN-----  140 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHH-HcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCc-----
Confidence            344566899999999999999999998 4566669999999999999999999     999999999998  332     


Q ss_pred             CCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 026423          129 EPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQR  198 (238)
Q Consensus       129 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  198 (238)
                            +..+..|.||||+|+..|+.++++.|++.|+++ ...+..|.|+++.|+..++.++++.+++.+
T Consensus       141 ------~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         141 ------NLRDEDGNTPLHWAALNGDADIVELLLEAGADP-NSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             ------cccCCCCCchhHHHHHcCchHHHHHHHhcCCCC-cccccCCCcchhhhcccchHHHHHHHHhcC
Confidence                  256899999999999999999999999999998 678999999999999999999999999864

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.60  E-value=2.1e-15  Score=84.35  Aligned_cols=54  Identities=22%  Similarity=0.259  Sum_probs=30.3

Q ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhh
Q 026423          175 EQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFI  229 (238)
Q Consensus       175 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  229 (238)
                      |.||+|+|++.|+.+++++|++.| .+++.+|.+|.||||+|+++|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~-~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHG-ADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTT-SGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            456666666666666666666665 666666666666666666666666666654

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.59  E-value=6.4e-15  Score=113.80  Aligned_cols=119  Identities=18%  Similarity=0.215  Sum_probs=104.1

Q ss_pred             HHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHH
Q 026423           31 ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPA  110 (238)
Q Consensus        31 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~  110 (238)
                      .|..|+..|.++.|+..+..-.|+ ...+.+|.|+||.|++.||.+||++|+ ..+.++|..|.+||||||+|+..++..
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~Dp-SqpNdEGITaLHNAiCaghyeIVkFLi-~~ganVNa~DSdGWTPLHCAASCNnv~  630 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTDP-SQPNDEGITALHNAICAGHYEIVKFLI-EFGANVNAADSDGWTPLHCAASCNNVP  630 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcCC-CCCCccchhHHhhhhhcchhHHHHHHH-hcCCcccCccCCCCchhhhhhhcCchH
Confidence            477899999999999999998888 888999999999999999999999999 788999999999999999999999999


Q ss_pred             HHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHH--HHcCCHHHHHHHHH
Q 026423          111 IVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNA--VRNKHENVVRMLVK  162 (238)
Q Consensus       111 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a--~~~~~~~~~~~ll~  162 (238)
                      +++.|++.|+.+...           .-.++.|+..-+  .+.|...+.+||..
T Consensus       631 ~ckqLVe~GaavfAs-----------TlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  631 MCKQLVESGAAVFAS-----------TLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHHHHhccceEEee-----------ecccccchhhhcchhhhhHHHHHHHHHH
Confidence            999999999887653           335667766544  45677888888864

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.59  E-value=2e-15  Score=84.77  Aligned_cols=56  Identities=18%  Similarity=0.229  Sum_probs=32.2

Q ss_pred             HHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHH
Q 026423          160 LVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSA  216 (238)
Q Consensus       160 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A  216 (238)
                      |+++|...++..|..|+||||+|+.+|+.+++++|++.| ++++.+|..|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g-~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNG-ADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT---TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCc-CCCCCCcCCCCCHHHhC
Confidence            566774445889999999999999999999999999777 99999999999999987

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.55  E-value=2.3e-14  Score=80.14  Aligned_cols=54  Identities=30%  Similarity=0.458  Sum_probs=45.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHH
Q 026423          141 GNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFII  195 (238)
Q Consensus       141 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  195 (238)
                      |.||||+|++.|+.+++++|++.|.++ +..|..|.||+|+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            679999999999999999999999987 778999999999999999999999986

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.54  E-value=3.4e-14  Score=118.63  Aligned_cols=87  Identities=14%  Similarity=0.063  Sum_probs=83.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCc
Q 026423          143 TPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNY  222 (238)
Q Consensus       143 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~  222 (238)
                      ..|+.|+..|+.+.+++|++.|+++ +..|..|.||||+|+..|+.+++++|++.| ++++.+|..|.||||+|+..++.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~G-advn~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLEFG-ADPTLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHCCcH
Confidence            3588899999999999999999988 788999999999999999999999999998 99999999999999999999999


Q ss_pred             chhHHhhhc
Q 026423          223 GEPMIFISL  231 (238)
Q Consensus       223 ~~~~~L~~~  231 (238)
                      +++++|+++
T Consensus       162 ~iv~~Ll~~  170 (664)
T PTZ00322        162 EVVQLLSRH  170 (664)
T ss_pred             HHHHHHHhC
Confidence            999999999

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.54  E-value=6.5e-14  Score=117.02  Aligned_cols=106  Identities=23%  Similarity=0.262  Sum_probs=94.6

Q ss_pred             cHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCC
Q 026423           98 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQT  177 (238)
Q Consensus        98 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t  177 (238)
                      ..|+.|+..|+.+.++.|++.|++++            ..+..|.||||+|+..|+.+++++|++.|+++ +..|..|.|
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin------------~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~T  150 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPN------------CRDYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKT  150 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCC------------CcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCC
Confidence            35888999999999999999997754            57889999999999999999999999999998 789999999


Q ss_pred             HHHHHHHcCcHHHHHHHHhc-------CCcccccCCCCCCcHHHHHH
Q 026423          178 PLSIAIDSSLTDIACFIIDQ-------RPESLNHRLPEELTLLHSAV  217 (238)
Q Consensus       178 ~l~~a~~~~~~~~~~~Ll~~-------~~~~~~~~~~~g~t~l~~A~  217 (238)
                      |||+|+..|+.+++++|+++       + ++.+..+..|.+|+..+.
T Consensus       151 pLh~A~~~g~~~iv~~Ll~~~~~~~~~g-a~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        151 PLELAEENGFREVVQLLSRHSQCHFELG-ANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHHCCcHHHHHHHHhCCCcccccC-CCCCccccCCCCccchhh
Confidence            99999999999999999998       5 777777777877766554

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.52  E-value=8.8e-15  Score=82.18  Aligned_cols=55  Identities=27%  Similarity=0.429  Sum_probs=32.2

Q ss_pred             HHhhh-hccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHH
Q 026423           47 IAGRM-QNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIA  103 (238)
Q Consensus        47 Ll~~~-~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a  103 (238)
                      |+++| .++ +..|..|.||||+||..|+.+++++|+ ..+.+++.+|..|+||+|+|
T Consensus         1 LL~~~~~~~-n~~d~~G~T~LH~A~~~g~~~~v~~Ll-~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADV-NAQDKYGNTPLHWAARYGHSEVVRLLL-QNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--T-T---TTS--HHHHHHHHT-HHHHHHHH-HCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCC-cCcCCCCCcHHHHHHHcCcHHHHHHHH-HCcCCCCCCcCCCCCHHHhC
Confidence            56777 666 888999999999999999999999999 89999999999999999987

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.52  E-value=5.7e-14  Score=108.67  Aligned_cols=118  Identities=19%  Similarity=0.215  Sum_probs=104.3

Q ss_pred             HHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHH
Q 026423           66 LHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL  145 (238)
Q Consensus        66 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  145 (238)
                      |.-|+..|-.++|+-.+ ..-.+....+..|.|+||-|+..|+.+||++|++.|++.+            ..|.+|||||
T Consensus       554 LLDaaLeGEldlVq~~i-~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVN------------a~DSdGWTPL  620 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRII-YEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVN------------AADSDGWTPL  620 (752)
T ss_pred             HHhhhhcchHHHHHHHH-HhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCccc------------CccCCCCchh
Confidence            44588899999999998 5666778888899999999999999999999999998855            6899999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHH--HcCcHHHHHHHHh
Q 026423          146 HNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAI--DSSLTDIACFIID  196 (238)
Q Consensus       146 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~--~~~~~~~~~~Ll~  196 (238)
                      |+|+..++..+++.|++.|+.++-..-.++.|+..-|-  +.|+..|.+||-.
T Consensus       621 HCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  621 HCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             hhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            99999999999999999999987667778999998764  4588999999863

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.50  E-value=3.3e-13  Score=97.09  Aligned_cols=120  Identities=19%  Similarity=0.251  Sum_probs=104.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCH
Q 026423           30 HELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDP  109 (238)
Q Consensus        30 ~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~  109 (238)
                      .+|..++..|+.+....|++.-.++ +..|.+|.|+|..|+..|+.++++.|++.+.+.....+..++|||++|+.+|+.
T Consensus        14 ~~Lle~i~Kndt~~a~~LLs~vr~v-n~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~   92 (396)
T KOG1710|consen   14 SPLLEAIDKNDTEAALALLSTVRQV-NQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQ   92 (396)
T ss_pred             hHHHHHHccCcHHHHHHHHHHhhhh-hccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCc
Confidence            4799999999999999999976667 889999999999999999999999999655554555677899999999999999


Q ss_pred             HHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 026423          110 AIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK  162 (238)
Q Consensus       110 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~  162 (238)
                      ++..+|++.|+...            ..+..|+|+-.+|+.-|+.+++..+-.
T Consensus        93 dvcrllldaGa~~~------------~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   93 DVCRLLLDAGARMY------------LVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             hHHHHHHhccCccc------------cccchhhhHHHHHHHhcchHHHHHHhc
Confidence            99999999997754            577899999999999999887776643

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.48  E-value=5.3e-13  Score=96.08  Aligned_cols=124  Identities=17%  Similarity=0.103  Sum_probs=110.3

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCC
Q 026423           95 KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNA  174 (238)
Q Consensus        95 ~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~  174 (238)
                      ...+||.-++-.+..+-...|++--..            ++..|..|.++|..|+..|+.++++.|++.|+++....+..
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~------------vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~   78 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQ------------VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGT   78 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhh------------hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccc
Confidence            346788889999999988888875322            34789999999999999999999999999999997677888


Q ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhc
Q 026423          175 EQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISL  231 (238)
Q Consensus       175 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  231 (238)
                      ++||||.|+..|+.++.+.|++.| +.....|.-|+|+-+.|+.-|+.++|..+-.+
T Consensus        79 ~YTpLmFAALSGn~dvcrllldaG-a~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   79 LYTPLMFAALSGNQDVCRLLLDAG-ARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             cccHHHHHHHcCCchHHHHHHhcc-CccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            999999999999999999999999 99999999999999999999999999877543

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.19  E-value=3.9e-11  Score=92.11  Aligned_cols=91  Identities=18%  Similarity=0.145  Sum_probs=85.8

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhC
Q 026423           28 MDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVG  107 (238)
Q Consensus        28 ~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~  107 (238)
                      ..-.+++|++.|+++.++.+.-.|.|+ ...|.+..|+||.|+..|+++++++|++....+++.+|.||+|||.-|...+
T Consensus       506 ~~i~~~~aa~~GD~~alrRf~l~g~D~-~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~  584 (622)
T KOG0506|consen  506 TVINVMYAAKNGDLSALRRFALQGMDL-ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFK  584 (622)
T ss_pred             chhhhhhhhhcCCHHHHHHHHHhcccc-cccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcC
Confidence            344699999999999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhhC
Q 026423          108 DPAIVSTILKYA  119 (238)
Q Consensus       108 ~~~~~~~ll~~~  119 (238)
                      +.+++++|-+.-
T Consensus       585 h~~v~k~L~~~~  596 (622)
T KOG0506|consen  585 HKEVVKLLEEAQ  596 (622)
T ss_pred             cHHHHHHHHHHh
Confidence            999999998754

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.16  E-value=1.7e-10  Score=89.15  Aligned_cols=87  Identities=14%  Similarity=0.065  Sum_probs=81.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcc
Q 026423          144 PLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYG  223 (238)
Q Consensus       144 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~  223 (238)
                      -||..++.|+.++.--|+..|++........|.||||+|++.|...-+++|+-+| +|+...|.+|+||+.+|-..|+.+
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYG-AD~~a~d~~GmtP~~~AR~~gH~~  214 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYG-ADPGAQDSSGMTPVDYARQGGHHE  214 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhcc-CCCCCCCCCCCcHHHHHHhcCchH
Confidence            4899999999999999999999996666778999999999999999999999999 999999999999999999999999


Q ss_pred             hhHHhhhc
Q 026423          224 EPMIFISL  231 (238)
Q Consensus       224 ~~~~L~~~  231 (238)
                      +++-|++.
T Consensus       215 laeRl~e~  222 (669)
T KOG0818|consen  215 LAERLVEI  222 (669)
T ss_pred             HHHHHHHH
Confidence            99988764

>PF13606 Ank_3: Ankyrin repeat

Probab=99.09  E-value=9e-11  Score=56.38  Aligned_cols=29  Identities=17%  Similarity=0.047  Sum_probs=18.5

Q ss_pred             CCCcHHHHHHHhcCcchhHHhhhcccccC
Q 026423          208 EELTLLHSAVMRQNYGEPMIFISLNKCLS  236 (238)
Q Consensus       208 ~g~t~l~~A~~~~~~~~~~~L~~~g~~~~  236 (238)
                      +|+||||+|+..|+.|++++|+++|+|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            35666666666666666666666666655

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.05  E-value=1.7e-10  Score=88.72  Aligned_cols=94  Identities=11%  Similarity=0.046  Sum_probs=86.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHH
Q 026423          139 DEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVM  218 (238)
Q Consensus       139 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~  218 (238)
                      ...-..+.+|++.|++..++-+.-.|.+. +.+|.+.+|+||+|+..|+++++++|++....+.+.+|..|+|||+-|..
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~-~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDL-ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccc-cccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence            44556789999999999999999889888 89999999999999999999999999999889999999999999999999


Q ss_pred             hcCcchhHHhhhccc
Q 026423          219 RQNYGEPMIFISLNK  233 (238)
Q Consensus       219 ~~~~~~~~~L~~~g~  233 (238)
                      .++.+++++|-+...
T Consensus       583 F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  583 FKHKEVVKLLEEAQY  597 (622)
T ss_pred             cCcHHHHHHHHHHhc
Confidence            999999999977654

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.96  E-value=1.6e-09  Score=83.86  Aligned_cols=109  Identities=16%  Similarity=0.128  Sum_probs=89.0

Q ss_pred             hhhhccccCCCCCCCCCCCCCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCcc
Q 026423            8 MTEFGTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDS   87 (238)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~   87 (238)
                      ++.|-....-.+-++.........||-.++.|+.++.-.|+..|+++++.....|.||||.|++.|+..-++.|+ -+|+
T Consensus       113 ~LtFv~~~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~-vYGA  191 (669)
T KOG0818|consen  113 MLAFVHRLPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLA-VYGA  191 (669)
T ss_pred             heeeeccCCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHh-hccC
Confidence            333333333334333344445556999999999999999999999996667778999999999999999999998 7999


Q ss_pred             ccccCCCCCCcHHHHHHHhCCHHHHHHHHh
Q 026423           88 LLRKNNWKGETPLHIAARVGDPAIVSTILK  117 (238)
Q Consensus        88 ~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~  117 (238)
                      +++..|..|.||+.+|-..|+.++.+-|++
T Consensus       192 D~~a~d~~GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  192 DPGAQDSSGMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CCCCCCCCCCcHHHHHHhcCchHHHHHHHH
Confidence            999999999999999999999988876665

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.96  E-value=5.3e-10  Score=91.59  Aligned_cols=84  Identities=25%  Similarity=0.221  Sum_probs=76.7

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHH
Q 026423          134 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLL  213 (238)
Q Consensus       134 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l  213 (238)
                      .+++|..|+++||+++..+..++++||+++|.++.-.-...|+||||-|+-+|+.+++-.|+.+| ..+.++|+.|..||
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g-~SL~i~Dkeglspl  123 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKG-RSLRIKDKEGLSPL  123 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcC-CceEEecccCCCHH
Confidence            44789999999999999999999999999999985444457999999999999999999999999 99999999999999


Q ss_pred             HHHHH
Q 026423          214 HSAVM  218 (238)
Q Consensus       214 ~~A~~  218 (238)
                      +...+
T Consensus       124 q~~~r  128 (1267)
T KOG0783|consen  124 QFLSR  128 (1267)
T ss_pred             HHHhh
Confidence            98776

>PF13606 Ank_3: Ankyrin repeat

Probab=98.95  E-value=1.2e-09  Score=52.42  Aligned_cols=29  Identities=21%  Similarity=0.458  Sum_probs=19.5

Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCcccc
Q 026423          174 AEQTPLSIAIDSSLTDIACFIIDQRPESLN  203 (238)
Q Consensus       174 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~  203 (238)
                      +|+||||+|++.|+.+++++|+++| +++|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~g-advn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHG-ADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcC-CCCC
Confidence            3667777777777777777777666 5554

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.92  E-value=9.5e-10  Score=54.40  Aligned_cols=30  Identities=17%  Similarity=0.115  Sum_probs=19.7

Q ss_pred             CCCcHHHHHHHhcCcchhHHhhhcccccCC
Q 026423          208 EELTLLHSAVMRQNYGEPMIFISLNKCLSI  237 (238)
Q Consensus       208 ~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~  237 (238)
                      +|.||||+|+.+++.+++++|+++|+++++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~   30 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINA   30 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence            356666666666666666666666666654

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.90  E-value=2.8e-09  Score=52.69  Aligned_cols=32  Identities=25%  Similarity=0.366  Sum_probs=22.8

Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCcccccCC
Q 026423          174 AEQTPLSIAIDSSLTDIACFIIDQRPESLNHRL  206 (238)
Q Consensus       174 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  206 (238)
                      +|.||||+|+..|+.+++++|+++| ++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHG-ADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTT-SCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCc-CCCCCCC
Confidence            3677777777777777777777766 7766655

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.89  E-value=2.4e-08  Score=78.98  Aligned_cols=120  Identities=23%  Similarity=0.295  Sum_probs=106.1

Q ss_pred             HHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCc-cccccCCCCCCcHHHHHHHhCCH
Q 026423           31 ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRD-SLLRKNNWKGETPLHIAARVGDP  109 (238)
Q Consensus        31 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~-~~~~~~~~~g~~~l~~a~~~~~~  109 (238)
                      .+..|+..+++-.++..-..|.++ ...+.+..+.||+|+..|+-++|+|+|++.+ ..++..+..|.|+||-|+..++.
T Consensus       869 eil~av~~~D~~klqE~h~~gg~l-l~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r  947 (1004)
T KOG0782|consen  869 EILRAVLSSDLMKLQETHLNGGSL-LIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNR  947 (1004)
T ss_pred             HHHHHHHhccHHHHHHHHhcCCce-EeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcch
Confidence            488899999988888888889998 7889999999999999999999999997665 45677888999999999999999


Q ss_pred             HHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 026423          110 AIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK  163 (238)
Q Consensus       110 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~  163 (238)
                      .+.++|++.|+...            ..|..|.||-..|-+.|+.+..-+|-+.
T Consensus       948 ~vc~~lvdagasl~------------ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  948 AVCQLLVDAGASLR------------KTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHHHhcchhhe------------ecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            99999999998754            5788999999999999999998888754

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.84  E-value=1.5e-08  Score=79.99  Aligned_cols=93  Identities=15%  Similarity=0.135  Sum_probs=57.6

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCc-cccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHH
Q 026423          137 TDDEGNTPLHNAVRNKHENVVRMLVKKDRI-PLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHS  215 (238)
Q Consensus       137 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~  215 (238)
                      ++.+..+.||+|+..|+-+++++++.+|+. .+...+..|.|+||-|+-.++-.+..+|++.| +.+-..|..|.||-..
T Consensus       895 ~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdag-asl~ktd~kg~tp~er  973 (1004)
T KOG0782|consen  895 QGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAG-ASLRKTDSKGKTPQER  973 (1004)
T ss_pred             eCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcc-hhheecccCCCChHHH
Confidence            445556666666666666666666666543 23344556666666666666666666666666 6666666666666666


Q ss_pred             HHHhcCcchhHHhhh
Q 026423          216 AVMRQNYGEPMIFIS  230 (238)
Q Consensus       216 A~~~~~~~~~~~L~~  230 (238)
                      |.+.++.+++.+|-+
T Consensus       974 aqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  974 AQQAGDPDLAAYLES  988 (1004)
T ss_pred             HHhcCCchHHHHHhh
Confidence            666666666666644

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.82  E-value=1.1e-08  Score=79.99  Aligned_cols=88  Identities=19%  Similarity=0.212  Sum_probs=74.0

Q ss_pred             cHHHHHHHcCCHHHHHHH-HHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcC
Q 026423          143 TPLHNAVRNKHENVVRML-VKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQN  221 (238)
Q Consensus       143 ~~l~~a~~~~~~~~~~~l-l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~  221 (238)
                      .|+|++......+-+... ...-...+...|..|.||||+|+..|+.+.++.|+..| +++..+|..||+|||.|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~-Adv~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAG-ADVSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcC-CCccccccccccHHHHHHHcCC
Confidence            468999888877665543 33333334678889999999999999999999999999 9999999999999999999999


Q ss_pred             cchhHHhhhc
Q 026423          222 YGEPMIFISL  231 (238)
Q Consensus       222 ~~~~~~L~~~  231 (238)
                      .+++..++.+
T Consensus       101 ~q~i~~vlr~  110 (560)
T KOG0522|consen  101 EQIITEVLRH  110 (560)
T ss_pred             HHHHHHHHHH
Confidence            9998888765

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.79  E-value=4.8e-09  Score=86.20  Aligned_cols=65  Identities=22%  Similarity=0.224  Sum_probs=31.5

Q ss_pred             cccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCC-CCCcHHHHHHHhCCHHHHHHHHhhCcc
Q 026423           56 STMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNW-KGETPLHIAARVGDPAIVSTILKYAPA  121 (238)
Q Consensus        56 ~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~~~l~~a~~~~~~~~~~~ll~~~~~  121 (238)
                      +..|..|.|+||+|+..+..++++||+ ++|.++..+|. .|+||||-|+..|+++++-.|+++|..
T Consensus        46 nikD~~GR~alH~~~S~~k~~~l~wLl-qhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S  111 (1267)
T KOG0783|consen   46 NIKDRYGRTALHIAVSENKNSFLRWLL-QHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS  111 (1267)
T ss_pred             hHHHhhccceeeeeeccchhHHHHHHH-hcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc
Confidence            444555555555555555555555555 23444433332 345555555555555555555555433

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.79  E-value=2.2e-08  Score=79.12  Aligned_cols=94  Identities=19%  Similarity=0.215  Sum_probs=83.0

Q ss_pred             CHHHHHHHHcCCHHHHHHHHhhhhcc--c-cccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHH
Q 026423           29 DHELLNVLRRGDEHQISLIAGRMQNI--F-STMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAAR  105 (238)
Q Consensus        29 ~~~l~~A~~~~~~~~v~~Ll~~~~~~--~-~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~  105 (238)
                      ...|..|+...+...+-.||.+|...  + ...+.+|.|+||+||+.|++.+.++|+ =++.+...+|..|+|+|.||-+
T Consensus       625 gqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLi-Wyg~dv~~rda~g~t~l~yar~  703 (749)
T KOG0705|consen  625 GQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLI-WYGVDVMARDAHGRTALFYARQ  703 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHH-HhCccceecccCCchhhhhHhh
Confidence            34589999999999999999998743  1 334567899999999999999999999 7899999999999999999999


Q ss_pred             hCCHHHHHHHHhhCcccc
Q 026423          106 VGDPAIVSTILKYAPAIT  123 (238)
Q Consensus       106 ~~~~~~~~~ll~~~~~~~  123 (238)
                      .|..+++..|+++|+...
T Consensus       704 a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  704 AGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             cccHHHHHHHHHcCCCcc
Confidence            999999999999996643

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.69  E-value=4.8e-08  Score=77.24  Aligned_cols=89  Identities=15%  Similarity=0.008  Sum_probs=77.0

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCcc---ccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcC
Q 026423          145 LHNAVRNKHENVVRMLVKKDRIP---LGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQN  221 (238)
Q Consensus       145 l~~a~~~~~~~~~~~ll~~~~~~---~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~  221 (238)
                      |..|+...++..+-+|+.+|...   -...+..|.|+||+|++.|++...++|+=+| +|+-.+|..|+|+|.||-..|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg-~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYG-VDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhC-ccceecccCCchhhhhHhhccc
Confidence            55677778888999999987543   1233557899999999999999999999777 9999999999999999999999


Q ss_pred             cchhHHhhhcccc
Q 026423          222 YGEPMIFISLNKC  234 (238)
Q Consensus       222 ~~~~~~L~~~g~~  234 (238)
                      .|++..|+++|+-
T Consensus       707 qec~d~llq~gcp  719 (749)
T KOG0705|consen  707 QECIDVLLQYGCP  719 (749)
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999963

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.65  E-value=8.1e-08  Score=75.31  Aligned_cols=87  Identities=23%  Similarity=0.292  Sum_probs=74.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhh--hhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCC
Q 026423           31 ELLNVLRRGDEHQISLIAGR--MQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGD  108 (238)
Q Consensus        31 ~l~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~  108 (238)
                      ++|+++...+.+.+...+..  +..+ +..|..|.||||.|+..|+.+.+..|+ ..++++..++..|++|||-|+..|+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~i-d~~D~~g~TpLhlAV~Lg~~~~a~~Ll-~a~Adv~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVI-DRRDPPGRTPLHLAVRLGHVEAARILL-SAGADVSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhcee-ccccCCCCccHHHHHHhcCHHHHHHHH-hcCCCccccccccccHHHHHHHcCC
Confidence            69999999888877664443  3445 888999999999999999999999999 6777788999999999999999999


Q ss_pred             HHHHHHHHhhC
Q 026423          109 PAIVSTILKYA  119 (238)
Q Consensus       109 ~~~~~~ll~~~  119 (238)
                      .+++..++.+.
T Consensus       101 ~q~i~~vlr~~  111 (560)
T KOG0522|consen  101 EQIITEVLRHL  111 (560)
T ss_pred             HHHHHHHHHHh
Confidence            99988777654

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.62  E-value=1.7e-07  Score=77.57  Aligned_cols=123  Identities=18%  Similarity=0.270  Sum_probs=98.0

Q ss_pred             cHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCC
Q 026423           98 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQT  177 (238)
Q Consensus        98 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t  177 (238)
                      --.-.|+..|+...++..++....        ++..+++.|..|.++++.|....+.++.++|++.+...        ..
T Consensus        27 ~~fL~a~E~gd~~~V~k~l~~~~~--------~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gd   90 (822)
T KOG3609|consen   27 KGFLLAHENGDVPLVAKALEYKAV--------SKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GD   90 (822)
T ss_pred             HHHHHHHHcCChHHHHHHHHhccc--------cccchhccChHhhhceecccccccHHHHHHHhcCcccc--------ch
Confidence            345568899999999888876543        12346689999999999999999999999999865322        46


Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCccc----------ccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCC
Q 026423          178 PLSIAIDSSLTDIACFIIDQRPESL----------NHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  237 (238)
Q Consensus       178 ~l~~a~~~~~~~~~~~Ll~~~~~~~----------~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~  237 (238)
                      +|.+|+..|.++.++.++.+. ...          ...-..+.||+.+|+..++.|++++|+..|+++..
T Consensus        91 ALL~aI~~~~v~~VE~ll~~~-~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   91 ALLLAIAVGSVPLVELLLVHF-VDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc-cccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            889999999999999999775 221          11123567999999999999999999999999853

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.56  E-value=3.8e-07  Score=75.56  Aligned_cols=126  Identities=20%  Similarity=0.155  Sum_probs=93.2

Q ss_pred             HHHHHHHcCCHHHHHHHHhhhh----ccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHh
Q 026423           31 ELLNVLRRGDEHQISLIAGRMQ----NIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARV  106 (238)
Q Consensus        31 ~l~~A~~~~~~~~v~~Ll~~~~----~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~  106 (238)
                      .+..|+..|+...|+..++...    ++ +..|.-|.++|+.|+.+.+.++.++|++ .+...       ..+|-.|+..
T Consensus        28 ~fL~a~E~gd~~~V~k~l~~~~~~~lni-nc~d~lGr~al~iai~nenle~~eLLl~-~~~~~-------gdALL~aI~~   98 (822)
T KOG3609|consen   28 GFLLAHENGDVPLVAKALEYKAVSKLNI-NCRDPLGRLALHIAIDNENLELQELLLD-TSSEE-------GDALLLAIAV   98 (822)
T ss_pred             HHHHHHHcCChHHHHHHHHhccccccch-hccChHhhhceecccccccHHHHHHHhc-Ccccc-------chHHHHHHHH
Confidence            5889999999999999998643    44 7788999999999999999999999994 33221       4578899999


Q ss_pred             CCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCcc
Q 026423          107 GDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP  167 (238)
Q Consensus       107 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~  167 (238)
                      |..+.++.++.+-...+....  ....-.....-+-||+..||-.++.+++++|+.+|+.+
T Consensus        99 ~~v~~VE~ll~~~~~~~~~~~--~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i  157 (822)
T KOG3609|consen   99 GSVPLVELLLVHFVDAPYLER--SGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCI  157 (822)
T ss_pred             HHHHHHHHHHhcccccchhcc--ccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCC
Confidence            999999999987533221111  00011122345677888888888888888888888776

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.55  E-value=1.1e-07  Score=80.36  Aligned_cols=88  Identities=25%  Similarity=0.286  Sum_probs=79.2

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHH
Q 026423          139 DEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVM  218 (238)
Q Consensus       139 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~  218 (238)
                      ..|.++||.|+..+...++++|+..|+++ +..+..|+||+|.+...|+...+..++++| ++.++.+..|.+|+++|..
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~d~~g~~plh~~~~~g~~~~~~~ll~~~-a~~~a~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADV-NALDSKGRTPLHHATASGHTSIACLLLKRG-ADPNAFDPDGKLPLDIAME  731 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcc-hhhhccCCCcchhhhhhcccchhhhhcccc-ccccccCccCcchhhHHhh
Confidence            46789999999999999999999999996 899999999999999999999999999988 9999999999999999987


Q ss_pred             hcCcchhHHh
Q 026423          219 RQNYGEPMIF  228 (238)
Q Consensus       219 ~~~~~~~~~L  228 (238)
                      ..+.+++-++
T Consensus       732 ~~~~d~~~l~  741 (785)
T KOG0521|consen  732 AANADIVLLL  741 (785)
T ss_pred             hccccHHHHH
Confidence            7666665444

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.44  E-value=3.6e-07  Score=77.28  Aligned_cols=134  Identities=16%  Similarity=0.087  Sum_probs=105.4

Q ss_pred             CCCCCCCCHHHHHHHHcCCHHHHHHHHhh-hhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHH
Q 026423           22 QELPTTMDHELLNVLRRGDEHQISLIAGR-MQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPL  100 (238)
Q Consensus        22 ~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l  100 (238)
                      ......+.+.+|.++..+..-.++.+++. |... ...+.+|...+|+|+ .++.++..+++.-.+..++.+|..|+|||
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tpL  645 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTPL  645 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCccc
Confidence            33455667789999999999999999996 5444 566788888888844 57888888887778888999999999999


Q ss_pred             HHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 026423          101 HIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK  163 (238)
Q Consensus       101 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~  163 (238)
                      |+|+..|+..++..|++.++......+      ....+..|.|+...|...|+..+..+|-+.
T Consensus       646 ~wAa~~G~e~l~a~l~~lga~~~~~td------ps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  646 HWAAFRGREKLVASLIELGADPGAVTD------PSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             chHhhcCHHHHHHHHHHhccccccccC------CCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            999999999999999988877553222      234556788888888888887776666543

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.32  E-value=1.1e-06  Score=60.16  Aligned_cols=73  Identities=14%  Similarity=0.161  Sum_probs=61.3

Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCC
Q 026423          133 LLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRL  206 (238)
Q Consensus       133 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  206 (238)
                      .++..|..|+|++..|+..|..+.+.||+.+|+..+...|..|.+++.+|-+.|..+++..|.+.. .+-+..+
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~-~ets~p~   76 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEND-RETSHPM   76 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHh-ccCCCcc
Confidence            567888999999999999999999999999996655888999999999999999999999998876 4444443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.28  E-value=3.5e-06  Score=63.84  Aligned_cols=69  Identities=16%  Similarity=0.270  Sum_probs=59.0

Q ss_pred             HHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHH
Q 026423           31 ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLH  101 (238)
Q Consensus        31 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~  101 (238)
                      .|..|++.|+.+.|++|++.|.++ +..|....+||.+|+..||.+.+++||+ +|+........|.-.++
T Consensus        39 elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLe-nGAiC~rdtf~G~RC~Y  107 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLE-NGAICSRDTFDGDRCHY  107 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHH-cCCcccccccCcchhhh
Confidence            599999999999999999999999 9999999999999999999999999995 55555554455555443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.25  E-value=1.6e-06  Score=65.58  Aligned_cols=59  Identities=19%  Similarity=0.213  Sum_probs=52.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCccc
Q 026423          142 NTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESL  202 (238)
Q Consensus       142 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~  202 (238)
                      .--|..||+.|+.+.+++|++.|..+ +..|....+||.+|+-.|+..++++|+++| +--
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLenG-AiC   95 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLENG-AIC   95 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHHcC-Ccc
Confidence            34488999999999999999988887 889999999999999999999999999999 433

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.22  E-value=4.5e-06  Score=57.24  Aligned_cols=64  Identities=8%  Similarity=-0.054  Sum_probs=60.5

Q ss_pred             ccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhc
Q 026423          168 LGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISL  231 (238)
Q Consensus       168 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  231 (238)
                      ++.+|..|+||+++|+..|..+.+.+|+.+|-+.+...|..|.++..+|-+.|..+++..|-+.
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            3789999999999999999999999999999889999999999999999999999999998775

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.12  E-value=4.6e-06  Score=70.85  Aligned_cols=128  Identities=13%  Similarity=0.085  Sum_probs=94.3

Q ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHhh-CccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCcc
Q 026423           90 RKNNWKGETPLHIAARVGDPAIVSTILKY-APAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK-KDRIP  167 (238)
Q Consensus        90 ~~~~~~g~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~-~~~~~  167 (238)
                      ......|.+.+|+++..++...++.+++- +...            ...+..+...+|.++ .+..+..-.++. .|..+
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~------------~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai  634 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGD------------LELDRDGQGVIHFCA-ALGYEWAFLPISADGVAI  634 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCc------------hhhcccCCChhhHhh-hcCCceeEEEEeeccccc
Confidence            44556788999999999999999999885 3221            146677778888844 445555544443 34444


Q ss_pred             ccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcc-----cccCCCCCCcHHHHHHHhcCcchhHHhhhc
Q 026423          168 LGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPES-----LNHRLPEELTLLHSAVMRQNYGEPMIFISL  231 (238)
Q Consensus       168 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-----~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  231 (238)
                       +.+|..|+||||+|+.+|+..++.-|++.|...     .......|.|+-..|..+|+..+..+|.+.
T Consensus       635 -~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  635 -DIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             -ccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence             789999999999999999999999999777221     223344688999999999999998888664

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.05  E-value=5.3e-06  Score=70.41  Aligned_cols=83  Identities=22%  Similarity=0.280  Sum_probs=72.3

Q ss_pred             CHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCC
Q 026423           29 DHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGD  108 (238)
Q Consensus        29 ~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~  108 (238)
                      .++||.|+..|+..++++|++.|.++ +..+..|.+|+|.+...|+...+..++ ..++..+..+..|.+|+++|....+
T Consensus       657 ~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~d~~g~~plh~~~~~g~~~~~~~ll-~~~a~~~a~~~~~~~~l~~a~~~~~  734 (785)
T KOG0521|consen  657 CSLLHVAVGTGDSGAVELLLQNGADV-NALDSKGRTPLHHATASGHTSIACLLL-KRGADPNAFDPDGKLPLDIAMEAAN  734 (785)
T ss_pred             cchhhhhhccchHHHHHHHHhcCCcc-hhhhccCCCcchhhhhhcccchhhhhc-cccccccccCccCcchhhHHhhhcc
Confidence            55799999999999999999999998 889999999999999999999999998 5888888999999999999977755


Q ss_pred             HHHHH
Q 026423          109 PAIVS  113 (238)
Q Consensus       109 ~~~~~  113 (238)
                      .+.+-
T Consensus       735 ~d~~~  739 (785)
T KOG0521|consen  735 ADIVL  739 (785)
T ss_pred             ccHHH
Confidence            54443

>smart00248 ANK ankyrin repeats

Probab=97.52  E-value=0.00011  Score=34.16  Aligned_cols=24  Identities=21%  Similarity=0.481  Sum_probs=12.0

Q ss_pred             CCCHHHHHHHcCcHHHHHHHHhcC
Q 026423          175 EQTPLSIAIDSSLTDIACFIIDQR  198 (238)
Q Consensus       175 g~t~l~~a~~~~~~~~~~~Ll~~~  198 (238)
                      |.||+|+|+..++.++++.|++.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~   25 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKG   25 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC
Confidence            344555555555555555555444

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=97.43  E-value=0.0067  Score=41.94  Aligned_cols=137  Identities=13%  Similarity=0.063  Sum_probs=66.5

Q ss_pred             HHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHH
Q 026423           32 LLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAI  111 (238)
Q Consensus        32 l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~  111 (238)
                      +..|++.+-.++++..-+...+.    -....+.+-.||+..+.++|+|+-+.-.      -..-.+.+.+|+...+.++
T Consensus        50 l~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qnL~------i~~~~~iFdIA~~~kDlsL  119 (192)
T PF03158_consen   50 LYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQNLH------IYNPEDIFDIAFAKKDLSL  119 (192)
T ss_pred             HHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhccC------CCCchhhhhhhhhccchhH
Confidence            55566666666655555433221    2345566667777777777777642111      1123445666666666555


Q ss_pred             HH----HHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCc
Q 026423          112 VS----TILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSL  187 (238)
Q Consensus       112 ~~----~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  187 (238)
                      ..    +++++..+..   ...       .+.--..-|..|+..|-...+.-.++.|.+.       ..++|..|+++++
T Consensus       120 yslGY~l~~~~~~~~~---~~d-------~~~ll~~hl~~a~~kgll~F~letlkygg~~-------~~~vls~Av~ynh  182 (192)
T PF03158_consen  120 YSLGYKLLFNRMMSEH---NED-------PTSLLTQHLEKAAAKGLLPFVLETLKYGGNV-------DIIVLSQAVKYNH  182 (192)
T ss_pred             HHHHHHHHHhhccccc---ccC-------HHHHHHHHHHHHHHCCCHHHHHHHHHcCCcc-------cHHHHHHHHHhhH
Confidence            21    1222211100   000       0000011245566666666666666655443       1156666666666


Q ss_pred             HHHHHHHH
Q 026423          188 TDIACFII  195 (238)
Q Consensus       188 ~~~~~~Ll  195 (238)
                      -.++.+++
T Consensus       183 RkIL~yfi  190 (192)
T PF03158_consen  183 RKILDYFI  190 (192)
T ss_pred             HHHHHHhh
Confidence            66666655

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=97.31  E-value=0.0013  Score=46.88  Aligned_cols=113  Identities=14%  Similarity=0.170  Sum_probs=79.0

Q ss_pred             HHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcC----CccccccCCCC
Q 026423          100 LHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKD----RIPLGYLNNAE  175 (238)
Q Consensus       100 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~----~~~~~~~~~~g  175 (238)
                      |.-|+...+.+-+.-++...                   ....+++-++...+..+++-+|++.-    .+......  +
T Consensus       157 ledAV~AsN~~~i~~~VtdK-------------------kdA~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~--~  215 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDK-------------------KDAHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEK--E  215 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcch-------------------HHHHHHHHHHhcccHHHHHHHHHhhcceecchhhhcCc--c
Confidence            45566666666666555432                   23446777888888889999998762    11212211  2


Q ss_pred             CCHHHHHH--HcCcHHHHHHHHhcCCcccccC---CCCCCcHHHHHHHhcCcchhHHhhhccc
Q 026423          176 QTPLSIAI--DSSLTDIACFIIDQRPESLNHR---LPEELTLLHSAVMRQNYGEPMIFISLNK  233 (238)
Q Consensus       176 ~t~l~~a~--~~~~~~~~~~Ll~~~~~~~~~~---~~~g~t~l~~A~~~~~~~~~~~L~~~g~  233 (238)
                      .--+-++.  ......++++.+++|.+++|.+   -..|.|-|+-|+++++-+++.+|+++||
T Consensus       216 ~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  216 LYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             hhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            22333433  2356789999999998887644   4679999999999999999999999998

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>smart00248 ANK ankyrin repeats

Probab=97.16  E-value=0.00093  Score=30.78  Aligned_cols=28  Identities=18%  Similarity=0.113  Sum_probs=16.3

Q ss_pred             CCcHHHHHHHhcCcchhHHhhhcccccC
Q 026423          209 ELTLLHSAVMRQNYGEPMIFISLNKCLS  236 (238)
Q Consensus       209 g~t~l~~A~~~~~~~~~~~L~~~g~~~~  236 (238)
                      |.||+++|+..++.++++.|++.|.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            4556666666666666666666655543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.10  E-value=0.00098  Score=52.79  Aligned_cols=68  Identities=18%  Similarity=0.180  Sum_probs=50.0

Q ss_pred             HHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHH
Q 026423          109 PAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAI  183 (238)
Q Consensus       109 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~  183 (238)
                      ...+++|.+++.+.+...      .....+..-.|+||+|+..|...++.+|++.|+++ ..+|..|.||+.++.
T Consensus       404 p~~ie~lken~lsgnf~~------~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp-~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDV------TPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDP-STKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccc------cccccccccchHHHHHHhcchHHHHHHHHHhcCCc-hhcccCCCCcccccc
Confidence            566677777765543221      12234455678899999999999999999999888 788999999998775

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.01  E-value=0.001  Score=52.71  Aligned_cols=88  Identities=15%  Similarity=0.098  Sum_probs=57.1

Q ss_pred             HHcCCHHHHHHHHhhhhccccc-----cCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHH
Q 026423           36 LRRGDEHQISLIAGRMQNIFST-----MSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPA  110 (238)
Q Consensus        36 ~~~~~~~~v~~Ll~~~~~~~~~-----~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~  110 (238)
                      ........+++|.+++.+.+..     .+....|+||+|+..|.-+++.+||. .++++..+|..|.||..++....-..
T Consensus       399 kk~~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Le-eg~Dp~~kd~~Grtpy~ls~nkdVk~  477 (591)
T KOG2505|consen  399 KKKPEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLE-EGCDPSTKDGAGRTPYSLSANKDVKS  477 (591)
T ss_pred             hccCchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHH-hcCCchhcccCCCCcccccccHHHHH
Confidence            3344566788888877665221     23346788899888888888888884 45888888888888888877333233


Q ss_pred             HHHHHHhhCccccC
Q 026423          111 IVSTILKYAPAITN  124 (238)
Q Consensus       111 ~~~~ll~~~~~~~~  124 (238)
                      ++......+....+
T Consensus       478 ~F~a~~~l~es~~n  491 (591)
T KOG2505|consen  478 IFIARRVLNESFGN  491 (591)
T ss_pred             HHHHHHHhcccccc
Confidence            33333333433333

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.61  E-value=0.021  Score=39.55  Aligned_cols=139  Identities=12%  Similarity=0.058  Sum_probs=92.3

Q ss_pred             chHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCC
Q 026423           63 NTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGN  142 (238)
Q Consensus        63 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (238)
                      ...|..|+..+...+++..-+....    .-...++.+..||+..+.++|+|+-++-                 .-.+..
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L~~----~~~~~q~LFElAC~~qkydiV~WI~qnL-----------------~i~~~~  105 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDLEN----ERYLNQELFELACEEQKYDIVKWIGQNL-----------------HIYNPE  105 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHhhc----chhHHHHHHHHHHHHccccHHHHHhhcc-----------------CCCCch
Confidence            5667789998888888876532221    1235678889999999999999996543                 233455


Q ss_pred             cHHHHHHHcCCHHHHH----HHHHcCCcccccc--CCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHH
Q 026423          143 TPLHNAVRNKHENVVR----MLVKKDRIPLGYL--NNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSA  216 (238)
Q Consensus       143 ~~l~~a~~~~~~~~~~----~ll~~~~~~~~~~--~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A  216 (238)
                      +.+..|....+.++..    +++...... ...  +..-..-|..|+..|...-+.-.+++| .+++.      ++|..|
T Consensus       106 ~iFdIA~~~kDlsLyslGY~l~~~~~~~~-~~~d~~~ll~~hl~~a~~kgll~F~letlkyg-g~~~~------~vls~A  177 (192)
T PF03158_consen  106 DIFDIAFAKKDLSLYSLGYKLLFNRMMSE-HNEDPTSLLTQHLEKAAAKGLLPFVLETLKYG-GNVDI------IVLSQA  177 (192)
T ss_pred             hhhhhhhhccchhHHHHHHHHHHhhcccc-cccCHHHHHHHHHHHHHHCCCHHHHHHHHHcC-CcccH------HHHHHH
Confidence            6677888888877532    222221100 000  000112356788899988888888888 54442      799999


Q ss_pred             HHhcCcchhHHhhh
Q 026423          217 VMRQNYGEPMIFIS  230 (238)
Q Consensus       217 ~~~~~~~~~~~L~~  230 (238)
                      +..++-.++.+++.
T Consensus       178 v~ynhRkIL~yfi~  191 (192)
T PF03158_consen  178 VKYNHRKILDYFIR  191 (192)
T ss_pred             HHhhHHHHHHHhhc
Confidence            99999999988875

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.60  E-value=0.03  Score=40.18  Aligned_cols=118  Identities=15%  Similarity=0.201  Sum_probs=73.6

Q ss_pred             HHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCC----CCCcHHHHHHH-
Q 026423           31 ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNW----KGETPLHIAAR-  105 (238)
Q Consensus        31 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~----~g~~~l~~a~~-  105 (238)
                      .|..|+..-+.+.+.-++....+.        .+++-+|..++..+++.+|+.+..  ....|.    .+..-+.++.+ 
T Consensus       156 sledAV~AsN~~~i~~~VtdKkdA--------~~Am~~si~~~K~dva~~lls~f~--ft~~dv~~~~~~~ydieY~LS~  225 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDKKDA--------HQAMWLSIGNAKEDVALYLLSKFN--FTKQDVASMEKELYDIEYLLSE  225 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcchHHH--------HHHHHHHhcccHHHHHHHHHhhcc--eecchhhhcCcchhhHHHHHhh
Confidence            378888888888888777755554        678888888888899999986432  122221    12223444433 


Q ss_pred             -hCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCc
Q 026423          106 -VGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRI  166 (238)
Q Consensus       106 -~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~  166 (238)
                       ..+..+++.++++|---.+..        -..-..|.|.|.-|..+++.+++.+|+++|+.
T Consensus       226 h~a~~kvL~~Fi~~Glv~vN~~--------F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  226 HSASYKVLEYFINRGLVDVNKK--------FQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             cCCcHHHHHHHHhccccccchh--------hhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence             345677777777763211100        01334567777777777777777777777763

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=94.93  E-value=0.081  Score=31.39  Aligned_cols=47  Identities=17%  Similarity=0.208  Sum_probs=38.2

Q ss_pred             HHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcC
Q 026423           31 ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR   85 (238)
Q Consensus        31 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~   85 (238)
                      .+..|+..|+.++++.+++.+ .+    +   ...+..|+...+.++++||++..
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~-~~----~---~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKN-KP----D---NDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHh-cc----H---HHHHHHHHHHhhHHHHHHHHHhc
Confidence            589999999999999999755 33    1   55689999999999999999654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=94.69  E-value=0.086  Score=31.28  Aligned_cols=47  Identities=21%  Similarity=0.301  Sum_probs=34.6

Q ss_pred             cHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 026423           98 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK  163 (238)
Q Consensus        98 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~  163 (238)
                      ..+..|+..|+.++++.+++.+.                   .....+..|+...+.++++||++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~-------------------~~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNK-------------------PDNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhc-------------------cHHHHHHHHHHHhhHHHHHHHHHh
Confidence            46778888888888888876541                   113568888888888888888875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	238
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-10
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-09
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		4e-09
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		5e-09
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		3e-08
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		6e-08
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		8e-08
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		1e-07
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-07
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-07
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-07
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		5e-07
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-07
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		5e-07
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		7e-07
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		8e-07
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-06
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		1e-06
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-06
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-06
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-06
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-06
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		3e-06
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-06
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		3e-06
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-04
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-06
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-06
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-05
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-05
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		4e-04
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		4e-05
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		6e-05
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		8e-05
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		1e-04
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		1e-04
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		2e-04
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		2e-04
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		2e-04
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		4e-04
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		4e-04
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		5e-04
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		5e-04
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		7e-04
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		7e-04

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 23/165 (13%)
Query: 31  ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLR 90
           +LL   R G + ++ ++     ++ +     G T LH+A R   H  I E+L +  + + 
Sbjct: 5   KLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAR-EGHLEIVEVLLKAGADVN 62
Query: 91  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 150
             +  G TPLH+AAR G   IV  +LK    +               D +G TPLH A R
Sbjct: 63  AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN------------AKDKDGYTPLHLAAR 110
Query: 151 NKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
             H  +V +L+K      G   NA+    +TP  +AID+   DIA
Sbjct: 111 EGHLEIVEVLLKA-----GADVNAQDKFGKTPFDLAIDNGNEDIA 150

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 23/165 (13%)
Query: 31  ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLR 90
           +LL   R G + ++ ++     ++ +     G T LH+A R   H  I E+L +  + + 
Sbjct: 5   KLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAR-EGHLEIVEVLLKAGADVN 62
Query: 91  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 150
             +  G TPLH+AAR G   IV  +LK    +               D +G TPLH A R
Sbjct: 63  AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN------------AKDKDGYTPLHLAAR 110
Query: 151 NKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
             H  +V +L+K      G   NA+    +TP  +AI     DIA
Sbjct: 111 EGHLEIVEVLLKA-----GADVNAQDKFGKTPFDLAIREGHEDIA 150

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 23/170 (13%)
Query: 26  TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR 85
           + +  +LL   R G + ++ ++     ++ +     G T LH+A R   H  I E+L + 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAR-EGHLEIVEVLLKA 69
Query: 86  DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
            + +   +  G TPLH+AAR G   IV  +LK    +               D +G TPL
Sbjct: 70  GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN------------AKDKDGYTPL 117
Query: 146 HNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
           H A R  H  +V +L+K      G   NA+    +T   I+ID+   D+A
Sbjct: 118 HLAAREGHLEIVEVLLKA-----GADVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 25/171 (14%)
Query: 26  TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR 85
           + +  +LL   R G + ++ ++     ++ +     G+T LH+A R   H  I E+L + 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADV-NAEDTYGDTPLHLAARV-GHLEIVEVLLKN 69
Query: 86  DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDE-GNTP 144
            + +   ++ G TPLH+AA+ G   IV  +LKY   +               DD  G+TP
Sbjct: 70  GADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVN-------------ADDTIGSTP 116
Query: 145 LHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
           LH A    H  +V +L+K      G   NA+    +T   I+ID+   D+A
Sbjct: 117 LHLAADTGHLEIVEVLLK-----YGADVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 23/165 (13%)
Query: 31  ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLR 90
           +LL   R G + ++ ++     ++ +T    G T LH+A     H  I E+L +  + + 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAT-DNDGYTPLHLAAS-NGHLEIVEVLLKNGADVN 74
Query: 91  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 150
            ++  G TPLH+AA  G   IV  +LK+   +               D++G+TPLH A +
Sbjct: 75  ASDLTGITPLHLAAATGHLEIVEVLLKHGADV------------NAYDNDGHTPLHLAAK 122
Query: 151 NKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
             H  +V +L+K      G   NA+    +T   I+ID+   D+A
Sbjct: 123 YGHLEIVEVLLKH-----GADVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 15/166 (9%)
Query: 26  TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR 85
           + +  +LL   R G + ++ ++     ++ +     G T LH+A  F  H  I E+L + 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADV-NARDFTGWTPLHLAAHF-GHLEIVEVLLKN 69
Query: 86  DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
            + +   +  G TPLH+AAR G   IV  +LK      NG +      +  +D  G TPL
Sbjct: 70  GADVNAKDSLGVTPLHLAARRGHLEIVEVLLK------NGAD------VNASDSHGFTPL 117
Query: 146 HNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA 191
           H A +  H  +V +L+ K+   +   +   +T   I+ID+   D+A
Sbjct: 118 HLAAKRGHLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 23/170 (13%)
Query: 26  TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR 85
           + +  +LL   R G + ++ ++     ++ +     G T LH+A   + H  I E+L + 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADV-NAEDDSGKTPLHLA-AIKGHLEIVEVLLKH 69
Query: 86  DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
            + +   +  G+TPLH+AA  G   IV  +LK      NG +      +  TD  G TPL
Sbjct: 70  GADVNAADKMGDTPLHLAALYGHLEIVEVLLK------NGAD------VNATDTYGFTPL 117
Query: 146 HNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
           H A    H  +V +L+K      G   NA+    +T   I+ID+   D+A
Sbjct: 118 HLAADAGHLEIVEVLLK-----YGADVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 23/165 (13%)
Query: 31  ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLR 90
           +LL   R G + ++ ++     ++ +T    G T LH+A  +  H  I E+L +  + + 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAT-DASGLTPLHLAATY-GHLEIVEVLLKHGADVN 74
Query: 91  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 150
             +  G TPLH+AA +G   IV  +LK+   +               D  G+TPLH A  
Sbjct: 75  AIDIXGSTPLHLAALIGHLEIVEVLLKHGADV------------NAVDTWGDTPLHLAAI 122
Query: 151 NKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
             H  +V +L+K      G   NA+    +T   I+ID+   D+A
Sbjct: 123 MGHLEIVEVLLKH-----GADVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 23/165 (13%)
Query: 31  ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLR 90
           +LL   R G + ++ ++     ++ +T    G T LH+A  +  H  I E+L +  + + 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAT-DASGLTPLHLAATY-GHLEIVEVLLKHGADVN 74
Query: 91  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 150
             +  G TPLH+AA +G   IV  +LK+   +               D  G+TPLH A  
Sbjct: 75  AIDIMGSTPLHLAALIGHLEIVEVLLKHGADV------------NAVDTWGDTPLHLAAI 122
Query: 151 NKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
             H  +V +L+K      G   NA+    +T   I+ID+   D+A
Sbjct: 123 MGHLEIVEVLLKH-----GADVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 23/170 (13%)
Query: 26  TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR 85
           + +  +LL   R G + ++ ++     ++ +T    G+T LH+A +   H  I E+L + 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAT-DWLGHTPLHLAAK-TGHLEIVEVLLKY 69
Query: 86  DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
            + +   +  G TPLH+AA  G   IV  +LK+   +               D EG TPL
Sbjct: 70  GADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADV------------NAKDYEGFTPL 117
Query: 146 HNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
           H A  + H  +V +L+K      G   NA+    +T   I+ID+   D+A
Sbjct: 118 HLAAYDGHLEIVEVLLK-----YGADVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 23/170 (13%)
Query: 26  TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR 85
           + +  +LL   R G + ++ ++     ++ +    +G+T LH+A  +  H  I E+L + 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADV-NAHDDQGSTPLHLA-AWIGHPEIVEVLLKH 69
Query: 86  DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
            + +   +  G TPLH+AA  G   IV  +LKY   +               D  G TPL
Sbjct: 70  GADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVN------------AQDAYGLTPL 117
Query: 146 HNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
           H A    H  +V +L+K      G   NA+    +T   I+ID+   D+A
Sbjct: 118 HLAADRGHLEIVEVLLKH-----GADVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 23/165 (13%)
Query: 31  ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLR 90
           +LL   R G + ++ ++     ++ + +   G T LH+A     H  I E+L +  + + 
Sbjct: 17  KLLEAARAGQDDEVRILIANGADV-NAVDNTGLTPLHLA-AVSGHLEIVEVLLKHGADVD 74
Query: 91  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 150
             +  G TPLH+AA  G   IV  +LKY   +               D  G+TPLH A  
Sbjct: 75  AADVYGFTPLHLAAMTGHLEIVEVLLKYGADV------------NAFDMTGSTPLHLAAD 122
Query: 151 NKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
             H  +V +L+K      G   NA+    +T   I+ID+   D+A
Sbjct: 123 EGHLEIVEVLLK-----YGADVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 23/165 (13%)
Query: 31  ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLR 90
           +LL   R G + ++ ++     ++ +     G T LH+A  +  H  I E+L +  + + 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADV-NAADNTGTTPLHLA-AYSGHLEIVEVLLKHGADVD 74
Query: 91  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 150
            ++  G TPLH+AA  G   IV  +LK      NG +      +   D +G TPLH A +
Sbjct: 75  ASDVFGYTPLHLAAYWGHLEIVEVLLK------NGAD------VNAMDSDGMTPLHLAAK 122
Query: 151 NKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
             +  +V +L+K      G   NA+    +T   I+ID+   D+A
Sbjct: 123 WGYLEIVEVLLKH-----GADVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 23/170 (13%)
Query: 26  TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR 85
           + +  +LL   R G + ++ ++     ++ +     G T LH+ +    H  I E+L + 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADV-NANDWFGITPLHLVVN-NGHLEIIEVLLKY 69
Query: 86  DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
            + +  ++  G TPLH+AA  G   IV  +LKY   +               D +G TPL
Sbjct: 70  AADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN------------AMDYQGYTPL 117
Query: 146 HNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
           H A  + H  +V +L+K      G   NA+    +T   I+ID+   D+A
Sbjct: 118 HLAAEDGHLEIVEVLLK-----YGADVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 26  TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR 85
           + +  +LL   R G + ++ ++     ++ + M   G T LH+A + R H  I E+L + 
Sbjct: 12  SDLGKKLLEATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAK-RGHLEIVEVLLKH 69
Query: 86  DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
            + +  ++  G TPLH+AA VG   IV  +L+Y   + N  +   ++   I+ D GN  L
Sbjct: 70  GADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADV-NAQDKFGKTAFDISIDNGNEDL 128

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 26  TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR 85
           + +  +LL   R G + ++ ++     ++ + M   G T LH+A + R H  I E+L + 
Sbjct: 12  SDLGKKLLEATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAK-RGHLEIVEVLLKH 69
Query: 86  DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
            + +  ++  G TPLH+AA VG   IV  +L+Y   + N  +   ++   I+ D GN  L
Sbjct: 70  GADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADV-NAQDKFGKTAFDISIDNGNEDL 128

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 14/121 (11%)
Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G T LH A +   HK I ++L  + + +   +  G TPLH AA+ G   IV  +      
Sbjct: 37  GRTPLHYAAK-EGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLL------ 89
Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
           I+ G +      +   D +G TPLH A +  H+ +V++L+ K    +   ++  +TPL +
Sbjct: 90  ISKGAD------VNAKDSDGRTPLHYAAKEGHKEIVKLLISKG-ADVNTSDSDGRTPLDL 142
Query: 182 A 182
           A
Sbjct: 143 A 143

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 26  TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR 85
           + +  +LL   R G + ++ ++     ++ + M   G T LH+A + R H  I E+L + 
Sbjct: 12  SDLGKKLLEATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAK-RGHLEIVEVLLKH 69
Query: 86  DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
            + +   +  G TPLH+AA VG   IV  +L+Y   + N  +   ++   I+ D GN  L
Sbjct: 70  GADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADV-NAQDKFGKTAFDISIDNGNEDL 128

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 16/135 (11%)
Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G T LH+A+   N  ++  +L R  S      W G TPLHIAA+     +  ++L+Y   
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARSLLQY--- 234
Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQ-TPLS 180
              G  +  ES+      +G TPLH A +  H  +V +L+ K     G L N    TPL 
Sbjct: 235 ---GGSANAESV------QGVTPLHLAAQEGHAEMVALLLSKQAN--GNLGNKSGLTPLH 283
Query: 181 IAIDSSLTDIACFII 195
           +        +A  +I
Sbjct: 284 LVAQEGHVPVADVLI 298

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 23/170 (13%)
Query: 26  TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR 85
           + +  +LL   R G + ++ ++     ++ +     G T LH+A  +  H  I E+L + 
Sbjct: 12  SDLGKKLLEAARAGRDDEVRILMANGADV-NAADVVGWTPLHLA-AYWGHLEIVEVLLKN 69
Query: 86  DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
            + +   +  G TPLH+AA  G   IV  +LK      NG +      +   DD G TPL
Sbjct: 70  GADVNAYDTLGSTPLHLAAHFGHLEIVEVLLK------NGAD------VNAKDDNGITPL 117
Query: 146 HNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
           H A    H  +V +L+K      G   NA+    +T   I+I++   D+A
Sbjct: 118 HLAANRGHLEIVEVLLK-----YGADVNAQDKFGKTAFDISINNGNEDLA 162

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 72/167 (43%), Gaps = 27/167 (16%)
Query: 31  ELLNVLRRG--DEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSL 88
           +LL   R G  DE +I +  G   N +      G T LHMA     H  I E+L R  + 
Sbjct: 5   KLLEAARAGQDDEVRILMANGADANAYD---HYGRTPLHMAAAV-GHLEIVEVLLRNGAD 60
Query: 89  LRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNA 148
           +   +  G TPLH+AA +G   IV  +LKY   +               D  G TPL+ A
Sbjct: 61  VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADV------------NAKDATGITPLYLA 108
Query: 149 VRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
               H  +V +L+K      G   NA+    +T   I+ID    D+A
Sbjct: 109 AYWGHLEIVEVLLKH-----GADVNAQDKFGKTAFDISIDIGNEDLA 150

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 14/121 (11%)
Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G T LH+A     HK + ++L  + +     +  G+TPLH+AA  G   +V  +L     
Sbjct: 37  GKTPLHLAAE-NGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQG-- 93
Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
                 ++P +     D +G TPLH A  N H+ VV++L+ +   P    ++  +TPL +
Sbjct: 94  ------ADPNA----KDSDGKTPLHLAAENGHKEVVKLLLSQGADP-NTSDSDGRTPLDL 142
Query: 182 A 182
           A
Sbjct: 143 A 143

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 23/170 (13%)
Query: 26  TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR 85
           + +  +LL   R G + ++ ++     ++ +     G T LH+A  F  H  I E+L + 
Sbjct: 12  SDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLA-AFNGHLEIVEVLLKN 69
Query: 86  DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
            + +   +  G TPL +AA  G   IV  +LK      NG +      +   D EG+TPL
Sbjct: 70  GADVNAVDHAGMTPLRLAALFGHLEIVEVLLK------NGAD------VNANDMEGHTPL 117
Query: 146 HNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
           H A    H  +V +L+K      G   NA+    +T   I+ID+   D+A
Sbjct: 118 HLAAMFGHLEIVEVLLKN-----GADVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 14/136 (10%)
Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G T LH A     HK I ++L  + +     +  G TPLH AA  G   IV  +L     
Sbjct: 37  GRTPLHYAAE-NGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKG-- 93
Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
                 ++P +     D +G TPLH A  N H+ +V++L+ K   P    ++  +TPL +
Sbjct: 94  ------ADPNA----KDSDGRTPLHYAAENGHKEIVKLLLSKGADP-NTSDSDGRTPLDL 142
Query: 182 AIDSSLTDIACFIIDQ 197
           A +    +I   +  Q
Sbjct: 143 AREHGNEEIVKLLEKQ 158

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 31  ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLR 90
           +LL   R G + ++ ++     ++ +    +GNT LH+A  + +H  I E+L +  + + 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADV-NANDRKGNTPLHLAADY-DHLEIVEVLLKHGADVN 74
Query: 91  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
            ++  G TPLH+AA  G   IV  +LK+  A  N  +   ++   I+ D GN  L
Sbjct: 75  AHDNDGSTPLHLAALFGHLEIVEVLLKHG-ADVNAQDKFGKTAFDISIDNGNEDL 128

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 21/115 (18%)
Query: 81  ILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDE 140
           IL    + +  N+ KG TPLH+AA      IV  +LK+   +               D++
Sbjct: 32  ILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN------------AHDND 79
Query: 141 GNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
           G+TPLH A    H  +V +L+K      G   NA+    +T   I+ID+   D+A
Sbjct: 80  GSTPLHLAALFGHLEIVEVLLKH-----GADVNAQDKFGKTAFDISIDNGNEDLA 129

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 23/170 (13%)
Query: 26  TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR 85
           + +  +LL   R G + ++ ++     ++ ++    G T LH+A  F  H  I E+L + 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAS-DHVGWTPLHLAAYF-GHLEIVEVLLKN 69
Query: 86  DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
            + +  ++  G TPLH+AA  G   +V  +LK      NG +      +   D  G TPL
Sbjct: 70  GADVNADDSLGVTPLHLAADRGHLEVVEVLLK------NGAD------VNANDHNGFTPL 117
Query: 146 HNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
           H A    H  +V +L+K      G   NA+    +T   I+ID+   D+A
Sbjct: 118 HLAANIGHLEIVEVLLKH-----GADVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 14/121 (11%)
Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G T LH A     HK + ++L  + + +   +  G TPLH AA  G   +V  +      
Sbjct: 37  GRTPLHHAAE-NGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL------ 89
Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
           I+ G +      +   D +G TPLH+A  N H+ VV++L+ K    +   ++  +TPL +
Sbjct: 90  ISKGAD------VNAKDSDGRTPLHHAAENGHKEVVKLLISK-GADVNTSDSDGRTPLDL 142
Query: 182 A 182
           A
Sbjct: 143 A 143

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G T LH+A R   H  + ++L    + +   +  G TPLH+AAR G   +V  +L     
Sbjct: 2   GRTPLHLAAR-NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL----- 55
Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
                  E  + +   D  G TPLH A RN H  VV++L++     +   +   +TPL +
Sbjct: 56  -------EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHL 107
Query: 182 AIDSSLTDIACFIID 196
           A  +   ++   +++
Sbjct: 108 AARNGHLEVVKLLLE 122

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G T LH+A R   H  + ++L    + +   +  G TPLH+AAR G   +V  +L     
Sbjct: 2   GRTPLHLAAR-NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL----- 55
Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK 162
                  E  + +   D  G TPLH A RN H  VV++L++
Sbjct: 56  -------EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 96  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 155
           G TPLH+AAR G   +V  +L            E  + +   D  G TPLH A RN H  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLL------------EAGADVNAKDKNGRTPLHLAARNGHLE 49
Query: 156 VVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID 196
           VV++L++     +   +   +TPL +A  +   ++   +++
Sbjct: 50  VVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 48/109 (44%), Gaps = 19/109 (17%)
Query: 79  PEILRRRDSLLRKNN-----WKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESL 133
           PEI RR   LLR  N       G   +H AAR G    + T+L++   +           
Sbjct: 50  PEIARRL--LLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVN---------- 97
Query: 134 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 182
             I D+EGN PLH A +  H  VV  LVK     +G+ N+   T   +A
Sbjct: 98  --IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 19/109 (17%)
Query: 79  PEILRRRDSLLRKNN-----WKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESL 133
           PEI RR   LLR  N       G   +H AAR G    + T+L++            ++ 
Sbjct: 50  PEIARRL--LLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEF------------QAD 95
Query: 134 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 182
           + I D+EGN PLH A +  H  VV  LVK     +G+ N+   T   +A
Sbjct: 96  VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 21/115 (18%)
Query: 81  ILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDE 140
           IL    + +  N++ G TPLH+AA +G   IV  +LK      NG +      +  T + 
Sbjct: 32  ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLK------NGAD------VNATGNT 79
Query: 141 GNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
           G TPLH A    H  +V +L+K      G   NA+    +T   I+ID+   D+A
Sbjct: 80  GRTPLHLAAWADHLEIVEVLLKH-----GADVNAQDKFGKTAFDISIDNGNEDLA 129

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 48/109 (44%), Gaps = 19/109 (17%)
Query: 79  PEILRRRDSLLRKNN-----WKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESL 133
           PEI RR   LLR  N       G   +H AAR G    + T+L++   +           
Sbjct: 50  PEIARRL--LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN---------- 97
Query: 134 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 182
             I D+EGN PLH A +  H  VV  LVK     +G+ N+   T   +A
Sbjct: 98  --IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 19/109 (17%)
Query: 79  PEILRRRDSLLRKNN-----WKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESL 133
           PEI RR   LLR  N       G   +H AAR G    + T+L++            ++ 
Sbjct: 50  PEIARRL--LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEF------------QAD 95
Query: 134 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 182
           + I D+EGN PLH A +  H  VV  LVK     +G+ N+   T   +A
Sbjct: 96  VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 24/165 (14%)
Query: 31  ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRR----RD 86
           +LL   R G + ++ ++         T    G + LH+A ++  H    E+L R    RD
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPF--TTDWLGTSPLHLAAQY-GHFSTTEVLLRAGVSRD 61
Query: 87  SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLH 146
           +  + +     TPLH+AA  G   IV  +LK+      G +   + +L++      T LH
Sbjct: 62  ARTKVD----RTPLHMAASEGHANIVEVLLKH------GADVNAKDMLKM------TALH 105
Query: 147 NAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA 191
            A  + H+ VV +L+K     +   +   +T   I+ID+   D+A
Sbjct: 106 WATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDLA 149

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 49/109 (44%), Gaps = 19/109 (17%)
Query: 79  PEILRRRDSLLRKNN-----WKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESL 133
           PEI RR   LLR  N       G   +H AAR G    + T+L            E ++ 
Sbjct: 50  PEIARRL--LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLL------------ENQAD 95
Query: 134 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 182
           + I D+EGN PLH A +  H  VV  LVK     +G+ N+   T   +A
Sbjct: 96  VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 55/137 (40%), Gaps = 14/137 (10%)
Query: 25  PTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRR 84
           P  MD ++    R G+   + L     +N  +     G + LH A R      + E+L  
Sbjct: 3   PEFMD-DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACR-EGRSAVVEMLIM 60
Query: 85  RDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTP 144
           R + +   N   +TPLH+AA  G   IV  +L+Y   I               ++ GN P
Sbjct: 61  RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN------------AVNEHGNVP 108
Query: 145 LHNAVRNKHENVVRMLV 161
           LH A     + V   LV
Sbjct: 109 LHYACFWGQDQVAEDLV 125

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 21/100 (21%)
Query: 96  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 155
           G TPLH+AA++G   IV  +LKY   +               D+ G TPLH A    H  
Sbjct: 47  GLTPLHLAAQLGHLEIVEVLLKYGADVN------------AEDNFGITPLHLAAIRGHLE 94
Query: 156 VVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
           +V +L+K      G   NA+    +T   I+ID+   D+A
Sbjct: 95  IVEVLLKH-----GADVNAQDKFGKTAFDISIDNGNEDLA 129

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 13/105 (12%)
Query: 59  SPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKY 118
           S  GNT LH A +  + + + ++L +   +  ++   G TPLH+AA+ G   IV  +L  
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSK-DGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 119 APAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 163
              +            R  D  GNTP H A +N H  +V++L  K
Sbjct: 65  GADVN----------ARSKD--GNTPEHLAKKNGHHEIVKLLDAK 97

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 15/113 (13%)
Query: 58  MSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKG---ETPLHIAARVGDPAIVST 114
           ++  G++ LH+AI      +  E++R+    L   N++    +TPLH+A     P I   
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63
Query: 115 ILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP 167
           +L        G   +PE    + D  GNTPLH A        V +L +    P
Sbjct: 64  LL--------GAGCDPE----LRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 104

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 15/113 (13%)
Query: 58  MSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKG---ETPLHIAARVGDPAIVST 114
           ++  G++ LH+AI      +  E++R+    L   N++    +TPLH+A     P I   
Sbjct: 1   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 60
Query: 115 ILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP 167
           +L        G   +PE    + D  GNTPLH A        V +L +    P
Sbjct: 61  LL--------GAGCDPE----LRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 101

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 26  TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR 85
           + +  +LL   R G + ++ ++     ++ +     G T LH+A    +H  I E+L + 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADV-NAEDKVGLTPLHLA-AMNDHLEIVEVLLKN 69
Query: 86  DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
            + +   +  GETPLH+ A  G   IV  +LK+  A  N  +   ++   I+ D GN  L
Sbjct: 70  GADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHG-ADVNAQDKFGKTAFDISIDNGNEDL 128

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 13/131 (9%)
Query: 31  ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLR 90
           ++    R G+   + L     +N  +     G + LH A R      + E+L  R + + 
Sbjct: 3   DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACR-EGRSAVVEMLIMRGARIN 61
Query: 91  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 150
             N   +TPLH+AA  G   IV  +L+Y   I               ++ GN PLH A  
Sbjct: 62  VMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN------------AVNEHGNVPLHYACF 109
Query: 151 NKHENVVRMLV 161
              + V   LV
Sbjct: 110 WGQDQVAEDLV 120

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	238
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-16
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-15
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-14
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-12
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-12
2rfa_A	232	Transient receptor potential cation channel subfa	2e-15
2rfa_A	232	Transient receptor potential cation channel subfa	4e-14
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-15
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-15
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-14
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-12
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-10
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-14
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-12
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-14
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-12
2pnn_A	273	Transient receptor potential cation channel subfa	5e-14
2pnn_A	273	Transient receptor potential cation channel subfa	5e-14
2pnn_A	273	Transient receptor potential cation channel subfa	6e-14
2pnn_A	273	Transient receptor potential cation channel subfa	6e-10
2pnn_A	273	Transient receptor potential cation channel subfa	8e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-14
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-12
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-13
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-13
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-14
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-13
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-06
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-13
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-10
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-10
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-13
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-12
2etb_A	256	Transient receptor potential cation channel subfam	3e-13
2etb_A	256	Transient receptor potential cation channel subfam	1e-11
2etb_A	256	Transient receptor potential cation channel subfam	4e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-13
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-09
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-13
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-06
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-13
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-13
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-13
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-09
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	8e-13
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-12
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	9e-13
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-12
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-10
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-12
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-12
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-12
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-12
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-10
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-12
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-09
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-06
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-12
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-12
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-12
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-11
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-08
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-12
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-10
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-08
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-10
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-12
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-11
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-11
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-09
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-11
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-11
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-11
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-09
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-11
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-11
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-09
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-11
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-10
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-11
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-10
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-07
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-11
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-09
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	8e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	8e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	8e-11
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-10
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-08
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-10
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-08
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-10
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	9e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 73.7 bits (182), Expect = 4e-16
 Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 22/167 (13%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
             T LH+A+   N   I E L          +++G TPLH+A   G  A V  + +    
Sbjct: 45  QQTPLHLAVI-TNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ---- 99

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK-------KDRIPLGYLNNA 174
             + T     S+L+ T+  G+T LH A  + +  +V +LV        ++          
Sbjct: 100 --SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE-------PCN 150

Query: 175 EQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQN 221
            +T L +A+D    D+   ++    + +N    +  +       R +
Sbjct: 151 GRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPS 196

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 71.4 bits (176), Expect = 3e-15
 Identities = 43/177 (24%), Positives = 62/177 (35%), Gaps = 38/177 (21%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLR-------KNNWKGETPLHIAARVGDPAIVST 114
           G++ LH+AI      +  E++R+   +         +NN   +TPLH+A     P I   
Sbjct: 8   GDSFLHLAIIHEEKALTMEVIRQ---VKGDLAFLNFQNN-LQQTPLHLAVITNQPEIAE- 62

Query: 115 ILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK--DRIPLGYLN 172
            L     +  G +        + D  GNTPLH A        V +L +          L 
Sbjct: 63  AL-----LGAGCD------PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILK 111

Query: 173 ---NAEQTPLSIAIDSSLTDIACFIIDQR-----PESLNHRLPEELTLLHSAVMRQN 221
                  T L +A       I   ++         E  N R     T LH AV  QN
Sbjct: 112 ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGR-----TALHLAVDLQN 163

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 68.3 bits (168), Expect = 3e-14
 Identities = 35/170 (20%), Positives = 59/170 (34%), Gaps = 34/170 (20%)

Query: 62  GNTVLHMAIRFRNHKVIPEIL------RRRDSLLRKNNWKGETPLHIAARVGDPAIVSTI 115
           GNT LH+A   +       +L          S+L+  N+ G T LH+A+  G   IV  +
Sbjct: 78  GNTPLHLACE-QGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE-L 135

Query: 116 LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV-------KKDRIPL 168
           L     ++ G +   +         G T LH AV  ++ ++V +L+       +      
Sbjct: 136 L-----VSLGADVNAQ-----EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT---- 181

Query: 169 GYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVM 218
                   +P  +      T I   +     E+    LPE          
Sbjct: 182 ----YQGYSPYQLTWGRPSTRIQQQLGQLTLEN-LQMLPESEDEESYDTE 226

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 64.5 bits (158), Expect = 1e-12
 Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 23/137 (16%)

Query: 91  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 150
                G++ LH+A    + A+   +++      +         L   ++   TPLH AV 
Sbjct: 4   LTE-DGDSFLHLAIIHEEKALTMEVIRQV--KGDLAF------LNFQNNLQQTPLHLAVI 54

Query: 151 NKHENVVRMLVKKDRIPLG----YLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRL 206
                +   L+       G      +    TPL +A +         +         H +
Sbjct: 55  TNQPEIAEALLGA-----GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSI 109

Query: 207 PEE-----LTLLHSAVM 218
            +       T LH A +
Sbjct: 110 LKATNYNGHTCLHLASI 126

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 63.7 bits (156), Expect = 2e-12
 Identities = 28/136 (20%), Positives = 48/136 (35%), Gaps = 25/136 (18%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLR------KNNWKGETPLHIAARVGDPAIVSTI 115
           G+T LH+A     +  I E+L     +        +    G T LH+A  + +P +VS +
Sbjct: 117 GHTCLHLASI-HGYLGIVELL-----VSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL 170

Query: 116 LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE 175
           LK    + N               +G +P           + + L +     L  L  +E
Sbjct: 171 LKCGADV-N-----------RVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE 218

Query: 176 QTPLSIAIDSSLTDIA 191
               S   +S  T+  
Sbjct: 219 -DEESYDTESEFTEFT 233

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 71.9 bits (177), Expect = 2e-15
 Identities = 31/148 (20%), Positives = 59/148 (39%), Gaps = 19/148 (12%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
             + L +A +  + + + ++L+     + +    GET LHIAA   +      +++ AP 
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK-------KDRIPLGYLNNA 174
           +     +           EG T LH AV N++ N+VR L+        +    + +    
Sbjct: 63  LVFEPMTS-------ELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPH 115

Query: 175 E-----QTPLSIAIDSSLTDIACFIIDQ 197
                 + PLS A      +I   +I+ 
Sbjct: 116 NLIYYGEHPLSFAACVGSEEIVRLLIEH 143

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 68.4 bits (168), Expect = 4e-14
 Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 35/160 (21%)

Query: 61  RGNTVLHMAIRFRNHKVIPEIL-------------RRRDSLLRKNNWKGETPLHIAARVG 107
            G T LH+A+    +  +   L                        + GE PL  AA VG
Sbjct: 74  EGQTALHIAVI-NQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVG 132

Query: 108 DPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK----- 162
              IV  +L     I +G +      +R  D  GNT LH  +   ++     +       
Sbjct: 133 SEEIVR-LL-----IEHGAD------IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSY 180

Query: 163 ----KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQR 198
                 +      NN   TP  +A       +   ++ +R
Sbjct: 181 DGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR 220

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 70.6 bits (174), Expect = 6e-15
 Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 12/123 (9%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G T LH+A+  +    + + L    + +R  +   + PLH AA VG   ++  +     +
Sbjct: 107 GVTCLHLAVG-KKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS 165

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
             N             D +G TPL +A+   H +   +LV+K       ++N       +
Sbjct: 166 AVN-----------WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214

Query: 182 AID 184
           A++
Sbjct: 215 ALN 217

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 70.2 bits (173), Expect = 8e-15
 Identities = 33/137 (24%), Positives = 52/137 (37%), Gaps = 10/137 (7%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
            N  LH A        + E+L  + SLL + +  G  PLH +       I S +L     
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDR-IPLGYLNNAEQTPLS 180
           +               DD G TP H A    +  VV+ L  +     L  + N   T L 
Sbjct: 62  VNLDDY---------PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLH 112

Query: 181 IAIDSSLTDIACFIIDQ 197
           +A+     +++ F+I+ 
Sbjct: 113 LAVGKKWFEVSQFLIEN 129

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 68.6 bits (169), Expect = 3e-14
 Identities = 33/167 (19%), Positives = 57/167 (34%), Gaps = 15/167 (8%)

Query: 53  NIFSTMSPRGNTVLHMAIRFRNHKVIPEIL--RRRDSLLRKNNWKGETPLHIAARVGDPA 110
           N+       G T  H+A     +  + + L  R     L K   +G T LH+A       
Sbjct: 63  NLDDYPDDSGWTPFHIAC-SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121

Query: 111 IVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGY 170
           +    L     I NG        +RI D     PLH A       ++ +L    +  + +
Sbjct: 122 VSQ-FL-----IENGAS------VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW 169

Query: 171 LNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAV 217
            +    TPL  A+     D A  ++++     +    +       A+
Sbjct: 170 QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 216

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 63.6 bits (156), Expect = 2e-12
 Identities = 36/175 (20%), Positives = 60/175 (34%), Gaps = 34/175 (19%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRR----DSLLRKNNWKGETPLHIAARVGDPAIVST-IL 116
           G   LH ++ F     I   L  +    +     ++  G TP HIA  VG+  +V +   
Sbjct: 36  GRIPLHWSVSF-QAHEITSFLLSKMENVNLDDYPDDS-GWTPFHIACSVGNLEVVKSLYD 93

Query: 117 KYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV-------KKDRIPLG 169
           +      N              ++G T LH AV  K   V + L+        KD     
Sbjct: 94  RPLKPDLN-----------KITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD----- 137

Query: 170 YLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGE 224
                 Q PL  A       +   +      ++N +  +  T L  A+  + +G+
Sbjct: 138 ---KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL-AEGHGD 188

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 59.0 bits (144), Expect = 7e-11
 Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 14/125 (11%)

Query: 96  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 155
              PLH A    +   V  +L      +  +           D +G  PLH +V  +   
Sbjct: 2   SNYPLHQACMENEFFKVQELL-----HSKPSLLL------QKDQDGRIPLHWSVSFQAHE 50

Query: 156 VVRMLVKK--DRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPES-LNHRLPEELTL 212
           +   L+ K  +     Y +++  TP  IA      ++   + D+  +  LN    + +T 
Sbjct: 51  ITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTC 110

Query: 213 LHSAV 217
           LH AV
Sbjct: 111 LHLAV 115

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 49.0 bits (118), Expect = 2e-07
 Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 28/108 (25%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKN----NWK---GETPLHIAARVGDPAIVST 114
               LH A        + E+L              NW+   G TPL  A   G       
Sbjct: 140 NQIPLHRAASV-GSLKLIELL------CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 192

Query: 115 ILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK 162
           +++   A  +           + D++G      A+   +E V +  + 
Sbjct: 193 LVEKYGAEYD-----------LVDNKGAKAEDVAL---NEQVKKFFLN 226

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 72.1 bits (178), Expect = 7e-15
 Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 15/157 (9%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G T LH+A  F  H  I + L +R +    +N K ETPLH+AAR G   +    L     
Sbjct: 14  GLTPLHVAS-FMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAK-YL----- 66

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
           + N  +      +     +  TPLH A R  H N+V++L++ +         A  TPL I
Sbjct: 67  LQNKAK------VNAKAKDDQTPLHCAARIGHTNMVKLLLENN-ANPNLATTAGHTPLHI 119

Query: 182 AIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVM 218
           A      +    ++++          +  T LH A  
Sbjct: 120 AAREGHVETVLALLEKEAS-QACMTKKGFTPLHVAAK 155

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 70.2 bits (173), Expect = 3e-14
 Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 15/157 (9%)

Query: 61  RGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAP 120
           +  T LHMA R   H  + + L +  + +       +TPLH AAR+G   +V  +L+   
Sbjct: 46  KVETPLHMAAR-AGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENN- 103

Query: 121 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLS 180
           A  N           +    G+TPLH A R  H   V  L++K+      +     TPL 
Sbjct: 104 ANPN-----------LATTAGHTPLHIAAREGHVETVLALLEKE-ASQACMTKKGFTPLH 151

Query: 181 IAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAV 217
           +A       +A  ++++     N      LT LH AV
Sbjct: 152 VAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAV 187

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 69.8 bits (172), Expect = 4e-14
 Identities = 37/163 (22%), Positives = 60/163 (36%), Gaps = 16/163 (9%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G T LH+A +   H  +  +L  + +     N  G TPLH+ A+ G   +   ++K+   
Sbjct: 245 GVTPLHLAAQ-EGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM 303

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
           +              T   G TPLH A    +  +V+ L++     +        +PL  
Sbjct: 304 VD------------ATTRMGYTPLHVASHYGNIKLVKFLLQHQ-ADVNAKTKLGYSPLHQ 350

Query: 182 AIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGE 224
           A     TDI   ++       N    +  T L  A  R  Y  
Sbjct: 351 AAQQGHTDIVTLLLKNGAS-PNEVSSDGTTPLAIAK-RLGYIS 391

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 69.4 bits (171), Expect = 6e-14
 Identities = 41/156 (26%), Positives = 62/156 (39%), Gaps = 15/156 (9%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G T LH+A+   N+  I ++L  R        W G TPLHIAA+     +  ++L+Y   
Sbjct: 179 GLTPLHVAVHH-NNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG-G 236

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
             N               +G TPLH A +  H  +V +L+ K        N +  TPL +
Sbjct: 237 SAN-----------AESVQGVTPLHLAAQEGHAEMVALLLSKQ-ANGNLGNKSGLTPLHL 284

Query: 182 AIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAV 217
                   +A  +I      ++       T LH A 
Sbjct: 285 VAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVAS 319

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 67.1 bits (165), Expect = 3e-13
 Identities = 39/160 (24%), Positives = 64/160 (40%), Gaps = 23/160 (14%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G+T LH+A R   H      L  +++       KG TPLH+AA+ G   +   +L     
Sbjct: 113 GHTPLHIAAR-EGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAE-LL----- 165

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG----YLNNAEQT 177
           +                  G TPLH AV + + ++V++L+ +     G           T
Sbjct: 166 LERDAHPN------AAGKNGLTPLHVAVHHNNLDIVKLLLPR-----GGSPHSPAWNGYT 214

Query: 178 PLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAV 217
           PL IA   +  ++A  ++       N    + +T LH A 
Sbjct: 215 PLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAA 253

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 67.1 bits (165), Expect = 3e-13
 Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 14/130 (10%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G T LH+  +   H  + ++L +   ++      G TPLH+A+  G+  +V  +L+    
Sbjct: 278 GLTPLHLVAQ-EGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ---- 332

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
             +  +             G +PLH A +  H ++V +L+K    P   +++   TPL+I
Sbjct: 333 --HQADVN------AKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP-NEVSSDGTTPLAI 383

Query: 182 AIDSSLTDIA 191
           A       + 
Sbjct: 384 AKRLGYISVT 393

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 60.6 bits (148), Expect = 6e-11
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 13/102 (12%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G T LH+A  + N K++ + L +  + +      G +PLH AA+ G   IV+ +LK   +
Sbjct: 311 GYTPLHVASHYGNIKLV-KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS 369

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 163
                             +G TPL  A R  + +V  +L   
Sbjct: 370 PN------------EVSSDGTTPLAIAKRLGYISVTDVLKVV 399

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 59.8 bits (146), Expect = 1e-10
 Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 14/127 (11%)

Query: 93  NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 152
              G TPLH+A+ +G   IV  +L+       G          +++ +  TPLH A R  
Sbjct: 11  GESGLTPLHVASFMGHLPIVKNLLQ------RGASPN------VSNVKVETPLHMAARAG 58

Query: 153 HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTL 212
           H  V + L++     +      +QTPL  A     T++   +++      N       T 
Sbjct: 59  HTEVAKYLLQNK-AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTP 116

Query: 213 LHSAVMR 219
           LH A   
Sbjct: 117 LHIAARE 123

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 46.3 bits (111), Expect = 3e-06
 Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 136 ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFII 195
              + G TPLH A    H  +V+ L+++        N   +TPL +A  +  T++A +++
Sbjct: 9   GGGESGLTPLHVASFMGHLPIVKNLLQRG-ASPNVSNVKVETPLHMAARAGHTEVAKYLL 67

Query: 196 DQRPESLNHRLPEELTLLHSAV 217
             + + +N +  ++ T LH A 
Sbjct: 68  QNKAK-VNAKAKDDQTPLHCAA 88

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 71.8 bits (177), Expect = 8e-15
 Identities = 24/141 (17%), Positives = 46/141 (32%), Gaps = 23/141 (16%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAI-VSTILKYAP 120
           G     +     + + + EI           + KG+T LH    +G   + +  IL    
Sbjct: 111 GQMPESLLNE-CDEREVNEIG------SHVKHCKGQTALHWCVGLGPEYLEMIKIL---- 159

Query: 121 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG----YLNNAEQ 176
            +  G            D    TPL  A+  ++   + +++            Y N    
Sbjct: 160 -VQLGASPT------AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN 212

Query: 177 TPLSIAIDSSLTDIACFIIDQ 197
           + L  AI  +  D+A   ++ 
Sbjct: 213 SHLHWAILINWEDVAMRFVEM 233

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 67.2 bits (165), Expect = 3e-13
 Identities = 34/183 (18%), Positives = 66/183 (36%), Gaps = 41/183 (22%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRK----NNWKGETPLHIAARVGDPAIVSTILK 117
           G T LH+A +        + L             + W G+ P+H+A       +V  +++
Sbjct: 53  GCTALHLACK-FGCVDTAKYL------ASVGEVHSLWHGQKPIHLAVMANKTDLVVALVE 105

Query: 118 YA---------PAITNGTESEPESLLRITDDEGNTPLHNAVR--NKHENVVRMLV----- 161
            A                    E    +   +G T LH  V    ++  ++++LV     
Sbjct: 106 GAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS 165

Query: 162 --KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPES----LNHRLPEELTLLHS 215
              KD         A++TPL  A++    +    ++D  P      L++   +  + LH 
Sbjct: 166 PTAKD--------KADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHW 217

Query: 216 AVM 218
           A++
Sbjct: 218 AIL 220

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 64.9 bits (159), Expect = 1e-12
 Identities = 24/178 (13%), Positives = 53/178 (29%), Gaps = 33/178 (18%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLL------RKNNWKGETPLHIAARVGDPAIVSTI 115
             T L  A+ F  ++   +++               N  +G + LH A  +    +    
Sbjct: 173 DETPLMRAMEF-RNREALDLMMDTVPSKSSLRLDYANK-QGNSHLHWAILINWEDVA-MR 229

Query: 116 LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG------ 169
                 +  G +        + D+E   PL+ +VR     + + L++K  + L       
Sbjct: 230 F-----VEMGIDVN------MEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYH 278

Query: 170 ------YLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQN 221
                          +  A D S  ++   + ++  E +   L            +  
Sbjct: 279 NGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDE-VVRSLNTGAGGAVKRKKKAA 335

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 63.3 bits (155), Expect = 5e-12
 Identities = 28/166 (16%), Positives = 47/166 (28%), Gaps = 41/166 (24%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLR------KNNWKGETPLHIAARVGDPAIVSTI 115
               +H+A R +        L     +        +N   G T LH+A + G        
Sbjct: 20  NMEKIHVAAR-KGQTDEVRRL-----IETGVSPTIQNR-FGCTALHLACKFGCVDTAK-Y 71

Query: 116 LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE 175
           L      + G           +   G  P+H AV     ++V  LV+             
Sbjct: 72  L-----ASVGEV--------HSLWHGQKPIHLAVMANKTDLVVALVEGA-------KERG 111

Query: 176 QTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQN 221
           Q P S+  +    ++       +         +  T LH  V    
Sbjct: 112 QMPESLLNECDEREVNEIGSHVKHC-------KGQTALHWCVGLGP 150

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 62.2 bits (152), Expect = 2e-11
 Identities = 16/138 (11%), Positives = 41/138 (29%), Gaps = 5/138 (3%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           GN+ LH AI   N + +          +   + +   PL+++ R     +   +L+    
Sbjct: 211 GNSHLHWAIL-INWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKT-D 268

Query: 122 ITNGTESEPESLLRI--TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPL 179
           +         +   +          +  A     + V+++L +K    +    N      
Sbjct: 269 VFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL-DEVVRSLNTGAGGA 327

Query: 180 SIAIDSSLTDIACFIIDQ 197
                 +   +    +  
Sbjct: 328 VKRKKKAAPAVKRMKLAP 345

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 59.5 bits (145), Expect = 1e-10
 Identities = 12/134 (8%), Positives = 38/134 (28%), Gaps = 27/134 (20%)

Query: 62  GNTVLHMAIRFRNHKVIPEIL-RRRDSLLRKN------------NWKGETPLHIAARVGD 108
               L++++R     ++ + L ++ D  L +                    +  AA    
Sbjct: 244 HTVPLYLSVR-AAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSK 302

Query: 109 PAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPL 168
             ++  + +    +              + + G        +     V RM +     P+
Sbjct: 303 QEVLQLLQEKLDEVV------------RSLNTGAGGAVKRKKKAAPAVKRMKLAPS-APV 349

Query: 169 GYLNNAEQTPLSIA 182
              + +     +++
Sbjct: 350 RTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 58.0 bits (141), Expect = 3e-10
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 20/109 (18%)

Query: 91  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 150
            ++ +    +H+AAR G    V   L     I  G          I +  G T LH A +
Sbjct: 16  SDD-ENMEKIHVAARKGQTDEVR-RL-----IETGVSPT------IQNRFGCTALHLACK 62

Query: 151 NKHENVVRMLVKKDRIPLGYLNNAE--QTPLSIAIDSSLTDIACFIIDQ 197
               +  + L        G +++    Q P+ +A+ ++ TD+   +++ 
Sbjct: 63  FGCVDTAKYLASV-----GEVHSLWHGQKPIHLAVMANKTDLVVALVEG 106

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 70.2 bits (172), Expect = 1e-14
 Identities = 40/166 (24%), Positives = 55/166 (33%), Gaps = 39/166 (23%)

Query: 61  RGNTVLHMAIRFRNHKVIPEIL--------------RRRDSLLRKNNWKGETPLHIAARV 106
           RG T LH+AI  R  K   E+L                +        + GE PL +AA  
Sbjct: 92  RGQTALHIAIE-RRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACT 150

Query: 107 GDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN---------VV 157
             P IV  + +      +         LR  D  GNT LH  V               + 
Sbjct: 151 NQPHIVHYLTENGHKQAD---------LRRQDSRGNTVLHALVAIADNTRENTKFVTKMY 201

Query: 158 RMLVKKD------RIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 197
            +L+ K             LNN   +PL +A  +    I   II +
Sbjct: 202 DLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR 247

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 62.9 bits (153), Expect = 4e-12
 Identities = 31/190 (16%), Positives = 62/190 (32%), Gaps = 26/190 (13%)

Query: 62  GNTVLHMAIRFRNHKVIPEILR-------RRDSLLRKNNWKGETPLHIAA---RVGDPAI 111
              +L   +   +   +  +L        R      +    G+T L  A      G    
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 112 VSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK-------KD 164
           +  +L  A    N  E        +    G T LH A+  + ++ V +LV+       + 
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDV-YYRGQTALHIAIERRCKHYVELLVEKGADVHAQA 123

Query: 165 RIPLGYLNNAE------QTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEEL--TLLHSA 216
           R       +        + PLS+A  ++   I  ++ +   +  + R  +    T+LH+ 
Sbjct: 124 RGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHAL 183

Query: 217 VMRQNYGEPM 226
           V   +     
Sbjct: 184 VAIADNTREN 193

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 55.9 bits (135), Expect = 1e-09
 Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 8/110 (7%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSL---LRKNNWKGETPLHIAARVGD---PAIVSTI 115
           G   L +A    N   I   L         LR+ + +G T LH    + D          
Sbjct: 140 GELPLSLAAC-TNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVT 198

Query: 116 LKYAPAITNGTE-SEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKD 164
             Y   +    +     +L  + +++G +PL  A +     + + +++++
Sbjct: 199 KMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRRE 248

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 15/80 (18%)

Query: 61  RGNTVLHMAIRFR-NHKVIPEILRRRDSLL--------------RKNNWKGETPLHIAAR 105
           RGNTVLH  +    N +   + + +   LL                 N  G +PL +AA+
Sbjct: 175 RGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAK 234

Query: 106 VGDPAIVSTILKYAPAITNG 125
            G   I   I++   A    
Sbjct: 235 TGKIGIFQHIIRREIADAAA 254

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 68.2 bits (168), Expect = 4e-14
 Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 22/144 (15%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLL-----RKNNWKGETPLHIAARVGDPAIVSTIL 116
           G+T LH+A+  + +      L              NN   +TPLH+A     P++V  +L
Sbjct: 9   GDTPLHIAVV-QGNLPAVHRLVNLFQQGGRELDIYNN-LRQTPLHLAVITTLPSVVR-LL 65

Query: 117 KYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLN---N 173
                +T G            D  G T  H A  ++    +R L+         L     
Sbjct: 66  -----VTAGASPM------ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY 114

Query: 174 AEQTPLSIAIDSSLTDIACFIIDQ 197
              T L +A+++   +    ++++
Sbjct: 115 DGLTALHVAVNTECQETVQLLLER 138

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 63.2 bits (155), Expect = 3e-12
 Identities = 37/133 (27%), Positives = 53/133 (39%), Gaps = 13/133 (9%)

Query: 90  RKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAV 149
           R +   G+TPLHIA   G+   V  ++        G E +      I ++   TPLH AV
Sbjct: 4   RADE-DGDTPLHIAVVQGNLPAVHRLVNLF--QQGGRELD------IYNNLRQTPLHLAV 54

Query: 150 RNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ---RPESLNHRL 206
                +VVR+LV         L+   QT   +A +         ++D        L  R 
Sbjct: 55  ITTLPSVVRLLVTAG-ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN 113

Query: 207 PEELTLLHSAVMR 219
            + LT LH AV  
Sbjct: 114 YDGLTALHVAVNT 126

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 62.9 bits (154), Expect = 4e-12
 Identities = 32/166 (19%), Positives = 64/166 (38%), Gaps = 26/166 (15%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKY-AP 120
             T LH+A+       +  +L    +     +  G+T  H+A     P  +  +L   AP
Sbjct: 46  RQTPLHLAVI-TTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAP 104

Query: 121 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV-------KKDRIPLGYLNN 173
              +         L   + +G T LH AV  + +  V++L+         D         
Sbjct: 105 GTLD---------LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVD-------IK 148

Query: 174 AEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMR 219
           + ++PL  A++++   +   ++      +N ++    + LHSA  R
Sbjct: 149 SGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGR 193

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 62.9 bits (154), Expect = 4e-12
 Identities = 30/149 (20%), Positives = 50/149 (33%), Gaps = 39/149 (26%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLR------KNNWKGETPLHIAARVGDPAIVSTI 115
           G T LH+A+     +   ++L     L R       +   G +PL  A      ++V  +
Sbjct: 116 GLTALHVAV-NTECQETVQLL-----LERGADIDAVDIKSGRSPLIHAVENNSLSMVQ-L 168

Query: 116 LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV-------KKDRIPL 168
           L     + +G               G++ LH+A       +VR LV        K+    
Sbjct: 169 L-----LQHGANVN------AQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKN---- 213

Query: 169 GYLNNAEQTPLSIAIDSSLTDIACFIIDQ 197
                   TPL +A    + DI      +
Sbjct: 214 ----CHNDTPLMVARSRRVIDILRGKATR 238

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 68.7 bits (168), Expect = 5e-14
 Identities = 31/185 (16%), Positives = 65/185 (35%), Gaps = 26/185 (14%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLR-------KNNWKGETPLHIA---ARVGDPAI 111
               +  A+   N + +  +L       +       K+   G+T L  A      G    
Sbjct: 13  DRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDT 72

Query: 112 VSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK-------KD 164
           ++ +L  A   T+  +    +    +  +G T LH A+  ++  +V +LV+         
Sbjct: 73  IALLLDVA-RKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAA 131

Query: 165 RIPLGYLNNAE------QTPLSIAIDSSLTDIACFIIDQRPES--LNHRLPEELTLLHSA 216
                            + PLS+A  ++   I  F++    +   ++ R     T+LH+ 
Sbjct: 132 NGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHAL 191

Query: 217 VMRQN 221
           V   +
Sbjct: 192 VEVAD 196

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 68.7 bits (168), Expect = 5e-14
 Identities = 33/151 (21%), Positives = 49/151 (32%), Gaps = 39/151 (25%)

Query: 61  RGNTVLHMAIRFRNHKVIPEIL---------RRRDSLLRKNNWK-----GETPLHIAARV 106
           +G T LH+AI  R +  +  +L                +K   +     GE PL +AA  
Sbjct: 100 KGQTALHIAIE-RRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACT 158

Query: 107 GDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRML------ 160
              AIV  +L+ +    +         +   D  GNT LH  V      V          
Sbjct: 159 NQLAIVKFLLQNSWQPAD---------ISARDSVGNTVLHALVEVADNTVDNTKFVTSMY 209

Query: 161 -----VKKDRIPLGYLNNAE----QTPLSIA 182
                +     P   L         TPL++A
Sbjct: 210 NEILILGAKLHPTLKLEEITNRKGLTPLALA 240

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 68.3 bits (167), Expect = 6e-14
 Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 16/129 (12%)

Query: 61  RGNTVLHMAIRFRNHKVIPEILRRRDSL---LRKNNWKGETPLHIAARVGDPAIVSTIL- 116
            G   L +A    N   I + L +       +   +  G T LH    V D  + +T   
Sbjct: 147 FGELPLSLAAC-TNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFV 205

Query: 117 --KYAPAITNGTE-SEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNN 173
              Y   +  G +      L  IT+ +G TPL  A  +    V+  +++++         
Sbjct: 206 TSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQRE--------I 257

Query: 174 AEQTPLSIA 182
            E      A
Sbjct: 258 HEPECRHAA 266

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 57.1 bits (138), Expect = 6e-10
 Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 21/161 (13%)

Query: 93  NWKGETPLHIAARVGDPAIVSTILKYA-PAITNGTESEPESLLRITDDEGNTPLHNAV-- 149
                  +  A    +   + ++L +   +    T+SE +       + G T L  A+  
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKD-----PETGKTCLLKAMLN 64

Query: 150 -RNKHENVVRMLVKK--DRIPLGYLNNAE--------QTPLSIAIDSSLTDIACFIIDQR 198
             N   + + +L+        L    NA         QT L IAI+     +   +++  
Sbjct: 65  LHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENG 124

Query: 199 PESLNHRLPEELTLLHSAVMRQNYGE-PMIFISLNKCLSIV 238
              +      +            +GE P+   +    L+IV
Sbjct: 125 A-DVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV 164

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 53.6 bits (129), Expect = 8e-09
 Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 36/111 (32%)

Query: 61  RGNTVLHMAIRFRNHKVIP----------------EILRRRDSLLRKNNWKGETPLHIAA 104
            GNTVLH  +   ++ V                  ++          N  KG TPL +AA
Sbjct: 183 VGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNR-KGLTPLALAA 241

Query: 105 RVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 155
             G   +++ IL+                    +       H A  + H +
Sbjct: 242 SSGKIGVLAYILQ-------------------REIHEPECRHAAAHHHHHH 273

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 68.3 bits (168), Expect = 6e-14
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 15/131 (11%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLL-RKNNWKGETPLHIAARVGDPAIVSTILKYAP 120
           G+T LH+A+       +  +LR   + L +     G TPLH+A      +++  +LK   
Sbjct: 158 GHTPLHVAV-IHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK--- 213

Query: 121 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLS 180
               G +             G TPL +A+   +  + R+L      P       + +P S
Sbjct: 214 ---AGADPT------ARMYGGRTPLGSALLRPNPILARLLRAHG-APEPEDGGDKLSPCS 263

Query: 181 IAIDSSLTDIA 191
            +   S +D  
Sbjct: 264 SSGSDSDSDNR 274

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 65.3 bits (160), Expect = 7e-13
 Identities = 32/194 (16%), Positives = 58/194 (29%), Gaps = 29/194 (14%)

Query: 31  ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLR 90
            +L  L+    H        +           +    +  +                 L 
Sbjct: 95  CVL--LQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLE 152

Query: 91  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 150
             N+ G TPLH+A    D  +V  +L        G +       +     G TPLH AV 
Sbjct: 153 AENYDGHTPLHVAVIHKDAEMVR-LL-----RDAGADLN-----KPEPTCGRTPLHLAVE 201

Query: 151 NKHENVVRMLVK-------KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLN 203
            +  +V+ +L+K       +            +TPL  A+      +A  +         
Sbjct: 202 AQAASVLELLLKAGADPTARM--------YGGRTPLGSALLRPNPILARLLRAHGAP-EP 252

Query: 204 HRLPEELTLLHSAV 217
               ++L+   S+ 
Sbjct: 253 EDGGDKLSPCSSSG 266

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 62.6 bits (153), Expect = 7e-12
 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 16/105 (15%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRR---DSLLRKNNWKGETPLHIAARVGDPAIVSTILKY 118
           G+T LH+A+    H+   + L         L   N  G+T LH+AA +G+ + V   L  
Sbjct: 9   GDTALHLAV-IHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE-KL-- 64

Query: 119 APAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 163
                 G          + +  G+T LH A R +      +L++ 
Sbjct: 65  ---YAAGAGVL------VAERGGHTALHLACRVRAHTCACVLLQP 100

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 61.8 bits (151), Expect = 1e-11
 Identities = 32/178 (17%), Positives = 59/178 (33%), Gaps = 40/178 (22%)

Query: 62  GNTVLHMAIRFRNHKVIPEIL---------RRRDSLLR----KNNWKGETPLHIAARVGD 108
           G+T LH+A R         +L            D+ L             P  + ++   
Sbjct: 78  GHTALHLACRV-RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNP 136

Query: 109 PAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV------- 161
                   +                    + +G+TPLH AV +K   +VR+L        
Sbjct: 137 ENEEEPRDEDWRLQLE-----------AENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN 185

Query: 162 KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMR 219
           K +           +TPL +A+++    +   ++    +    R+    T L SA++R
Sbjct: 186 KPE-------PTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLR 235

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 58.7 bits (143), Expect = 1e-10
 Identities = 25/150 (16%), Positives = 38/150 (25%), Gaps = 25/150 (16%)

Query: 96  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 155
           G+T LH+A        +   L     +      E    L + +D G T LH A      +
Sbjct: 9   GDTALHLAVIHQHEPFLD-FL-----LGFSAGHEY---LDLQNDLGQTALHLAAILGEAS 59

Query: 156 VVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPE 208
            V  L          +            T L +A        AC ++  RP        +
Sbjct: 60  TVEKLYAAGAGVLVAE--------RGGHTALHLACRVRAHTCACVLLQPRPS-HPRDASD 110

Query: 209 ELTLLHSAVMRQNYGEPMIFISLNKCLSIV 238
                           P    S     +  
Sbjct: 111 TYLTQSQDCTPDTSHAPAAVDSQPNPENEE 140

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 57.6 bits (140), Expect = 3e-10
 Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 13/103 (12%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G T LH+A+       + E+L +  +      + G TPL  A    +P +   +  +  A
Sbjct: 192 GRTPLHLAVE-AQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG-A 249

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKD 164
                             +  +P  ++  +   +      + D
Sbjct: 250 PEP-----------EDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 46.0 bits (110), Expect = 4e-06
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 133 LLRITDDEGNTPLHNAVRNKHENVVRMLVKK--DRIPLGYLNNAEQTPLSIAIDSSLTDI 190
           +     ++G+T LH AV ++HE  +  L+        L   N+  QT L +A        
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 191 ACFIIDQ 197
              +   
Sbjct: 61  VEKLYAA 67

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 68.3 bits (168), Expect = 8e-14
 Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 22/143 (15%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLR-------KNNWKGETPLHIAARVGDPAIVST 114
           G T L  A   + H  + +IL     L          +N  G   L  A    D + V  
Sbjct: 148 GATALMDAAE-KGHVEVLKIL-----LDEMGADVNACDN-MGRNALIHALLSSDDSDVEA 200

Query: 115 ILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNA 174
           I      + +G +        +  + G TPL  AV  KH  +V+ L++++ I +   ++ 
Sbjct: 201 ITHLL--LDHGADVN------VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD 252

Query: 175 EQTPLSIAIDSSLTDIACFIIDQ 197
            +T L +A++  L  IA  +  +
Sbjct: 253 GKTALLLAVELKLKKIAELLCKR 275

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 66.0 bits (162), Expect = 4e-13
 Identities = 31/177 (17%), Positives = 57/177 (32%), Gaps = 34/177 (19%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLR------KNNWKGETPLHIAARVGDPAIVSTI 115
           G T LH A++  + + I E+L     L        +    G TP  +AA  G   ++  +
Sbjct: 39  GWTPLHNAVQ-MSREDIVELL-----LRHGADPVLRKK-NGATPFLLAAIAGSVKLLK-L 90

Query: 116 LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK---------KDRI 166
                 ++ G +          D  G T    A        ++ L K         K + 
Sbjct: 91  F-----LSKGADVN------ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE 139

Query: 167 PLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYG 223
               L     T L  A +    ++   ++D+    +N         L  A++  +  
Sbjct: 140 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 196

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 65.2 bits (160), Expect = 9e-13
 Identities = 27/178 (15%), Positives = 48/178 (26%), Gaps = 48/178 (26%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLR------KNNWKGETPLHIAARVGDPAIVSTI 115
            N +L  A++      + + L     L        +    G TPLH A ++    IV  +
Sbjct: 5   DNHLLIKAVQN-EDVDLVQQL-----LEGGANVNFQEEEGGWTPLHNAVQMSREDIVE-L 57

Query: 116 LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV-------KKDRIPL 168
           L     + +G +        +    G TP   A       ++++ +       + D    
Sbjct: 58  L-----LRHGADPV------LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECD---- 102

Query: 169 GYLNNAEQTPLSIAIDSSLTDIACFII---------DQRPESLNHRLPEELTLLHSAV 217
                   T    A          F+           +  E          T L  A 
Sbjct: 103 ----FYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 156

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 62.1 bits (152), Expect = 1e-11
 Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 27/150 (18%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLR------KNNWKGETPLHIAARVGDPAIVSTI 115
           G T   +A        + ++      L +       + + G T    AA  G    +   
Sbjct: 72  GATPFLLAAI-AGSVKLLKLF-----LSKGADVNECDFY-GFTAFMEAAVYGKVKAL-KF 123

Query: 116 LKYAPAITNG----TESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYL 171
           L        G       + +         G T L +A    H  V+++L+ +    +   
Sbjct: 124 L-----YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC 178

Query: 172 NNAEQTPLSIAI----DSSLTDIACFIIDQ 197
           +N  +  L  A+    DS +  I   ++D 
Sbjct: 179 DNMGRNALIHALLSSDDSDVEAITHLLLDH 208

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 52.9 bits (128), Expect = 1e-08
 Identities = 23/134 (17%), Positives = 44/134 (32%), Gaps = 27/134 (20%)

Query: 93  NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 152
             +    L  A +  D  +V   L     +  G     +      ++ G TPLHNAV+  
Sbjct: 2   AVEDNHLLIKAVQNEDVDLV-QQL-----LEGGANVNFQ-----EEEGGWTPLHNAVQMS 50

Query: 153 HENVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHR 205
            E++V +L+        +             TP  +A  +    +    + +  + +N  
Sbjct: 51  REDIVELLLRHGADPVLRK--------KNGATPFLLAAIAGSVKLLKLFLSKGAD-VNEC 101

Query: 206 LPEELTLLHSAVMR 219
                T    A + 
Sbjct: 102 DFYGFTAFMEAAVY 115

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 68.3 bits (168), Expect = 9e-14
 Identities = 31/162 (19%), Positives = 57/162 (35%), Gaps = 22/162 (13%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
               L  A R  N + +  +L   +     ++ +  TPLH+AA      IV  +L     
Sbjct: 24  KKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQ-LL----- 77

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK----DRIPLGYLNNAEQT 177
           + +G +          D  G  PLHNA    H  V  +L+K     + +     +  + T
Sbjct: 78  LQHGADVH------AKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAM-----DLWQFT 126

Query: 178 PLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMR 219
           PL  A   +  ++   ++    +          + +  A   
Sbjct: 127 PLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMAPTP 167

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 65.6 bits (161), Expect = 8e-13
 Identities = 32/172 (18%), Positives = 57/172 (33%), Gaps = 23/172 (13%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
             T LH A   +N   +  +L    +     N  G++ + +A        ++   K    
Sbjct: 124 QFTPLHEAAS-KNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSL 182

Query: 122 I---TNGTESEPESLLR------ITDDEGNTPLHNAVRNKHEN---VVRMLVKKDRIPLG 169
           +        ++ +  L              T LH AV + H     V  +L++K     G
Sbjct: 183 LQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK-----G 237

Query: 170 ----YLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAV 217
                 N    TPL +A + +  D+   +     + +N       T LH A 
Sbjct: 238 ANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAA 288

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 65.2 bits (160), Expect = 1e-12
 Identities = 31/174 (17%), Positives = 57/174 (32%), Gaps = 28/174 (16%)

Query: 61  RGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAP 120
           R +T LH+A  + N   I ++L +  + +   +  G  PLH A   G   +   +L    
Sbjct: 57  RKSTPLHLAAGY-NRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTE-LL---- 110

Query: 121 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG----YLNNAEQ 176
            + +G            D    TPLH A       V  +L+       G     +N   +
Sbjct: 111 -LKHGACVN------AMDLWQFTPLHEAASKNRVEVCSLLLSH-----GADPTLVNCHGK 158

Query: 177 TPLSIAIDSSLTDIACFIIDQRP-----ESLNHRLPEELTLLHSAVMRQ-NYGE 224
           + + +A    L +   +              +    ++   L     +Q    E
Sbjct: 159 SAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHE 212

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 63.3 bits (155), Expect = 6e-12
 Identities = 29/142 (20%), Positives = 48/142 (33%), Gaps = 24/142 (16%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G+++L  A R  +   + + L       ++     ET LH A     P            
Sbjct: 179 GHSLLQAA-READLAKVKKTLALEIINFKQPQ-SHETALHCAVASLHPKRKQVA------ 230

Query: 122 ITNGTESEPESLLR------ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE 175
                    E LLR        + +  TPLH A    H +V+ +L K     +  L++  
Sbjct: 231 ---------ELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG-AKMNALDSLG 280

Query: 176 QTPLSIAIDSSLTDIACFIIDQ 197
           QT L  A  +        ++  
Sbjct: 281 QTALHRAALAGHLQTCRLLLSY 302

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 62.9 bits (154), Expect = 7e-12
 Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 15/125 (12%)

Query: 62  GNTVLHMAIR--FRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYA 119
             T LH A+       K + E+L R+ + + + N    TPLH+AA      ++  + K  
Sbjct: 211 HETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHK-- 268

Query: 120 PAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPL 179
               +G +          D  G T LH A    H    R+L+         ++    T  
Sbjct: 269 ----HGAKMN------ALDSLGQTALHRAALAGHLQTCRLLLSYG-SDPSIISLQGFTAA 317

Query: 180 SIAID 184
            +  +
Sbjct: 318 QMGNE 322

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 51.7 bits (125), Expect = 4e-08
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 17/101 (16%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
             T LH+A   R H  + E+L +  + +   +  G+T LH AA  G       +L Y  +
Sbjct: 247 FMTPLHVAAE-RAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYG-S 304

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK 162
             +           I   +G T         +E V ++L +
Sbjct: 305 DPS-----------IISLQGFTAAQMG----NEAVQQILSE 330

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 13/123 (10%)

Query: 95  KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE 154
             +  L  AAR G+   +  +L                    +D   +TPLH A      
Sbjct: 23  YKKDELLEAARSGNEEKLMALL-----TPLNVNCH------ASDGRKSTPLHLAAGYNRV 71

Query: 155 NVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLH 214
            +V++L++     +   +     PL  A      ++   ++      +N     + T LH
Sbjct: 72  RIVQLLLQHG-ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC-VNAMDLWQFTPLH 129

Query: 215 SAV 217
            A 
Sbjct: 130 EAA 132

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 67.6 bits (166), Expect = 1e-13
 Identities = 34/167 (20%), Positives = 58/167 (34%), Gaps = 39/167 (23%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRK----NNWKGETPLHIAARVGDPAIVSTILK 117
           G++  + AI   N+  +   L      L      N  + E PLH AA + D  IV  +L 
Sbjct: 31  GHSASYYAIA-DNNVRLVCTL------LNAGALKNLLENEFPLHQAATLEDTKIVKILLF 83

Query: 118 YAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV-------KKDRIPLGY 170
                +              DD+GNT L+ AV + +   V++ V                
Sbjct: 84  SGLDDS------------QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYG------ 125

Query: 171 LNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAV 217
                +T    A+  +   I  + + + P      L   L+ +H  +
Sbjct: 126 -KTGWKTSFYHAVMLNDVSIVSYFLSEIPS--TFDLAILLSCIHITI 169

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 61.4 bits (150), Expect = 2e-11
 Identities = 18/103 (17%), Positives = 41/103 (39%), Gaps = 15/103 (14%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDS-LLRKNNWKGETPLHIAARVGDPAIVSTILKYAP 120
           GNT L+ A+    +    ++  +++  L+       +T  + A  + D +IVS  L   P
Sbjct: 95  GNTALYYAVD-SGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP 153

Query: 121 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 163
           +                     + +H  ++N H +++ +L+  
Sbjct: 154 ST-------------FDLAILLSCIHITIKNGHVDMMILLLDY 183

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 52.5 bits (127), Expect = 2e-08
 Identities = 24/143 (16%), Positives = 43/143 (30%), Gaps = 33/143 (23%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G  +    I     K +   L  +D    K +  G +  + A    +  +V   L     
Sbjct: 1   GMDLSR--INTWKSKQLKSFLSSKD--TFKADVHGHSASYYAIADNNVRLV-CTL----- 50

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV-------KKDRIPLGYLNNA 174
           +  G              E   PLH A   +   +V++L+       + D        + 
Sbjct: 51  LNAGAL--------KNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFD--------DK 94

Query: 175 EQTPLSIAIDSSLTDIACFIIDQ 197
             T L  A+DS         + +
Sbjct: 95  GNTALYYAVDSGNMQTVKLFVKK 117

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 51.8 bits (125), Expect = 4e-08
 Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 17/105 (16%)

Query: 62  GNTVLHMAIRFRNHKVIPEIL-RRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAP 120
             T  + A+   N   I         S          + +HI  + G   ++  +L    
Sbjct: 129 WKTSFYHAVML-NDVSIVSYFLSEIPSTFDLAI--LLSCIHITIKNGHVDMM-ILL---- 180

Query: 121 AITNGTESEPESLLRITDDEGNTP-LHNAVRNKHENVVRMLVKKD 164
            +   T +         +     P +  A+ NK   +++ L K D
Sbjct: 181 -LDYMTSTN------TNNSLLFIPDIKLAIDNKDIEMLQALFKYD 218

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 13/103 (12%), Positives = 31/103 (30%), Gaps = 21/103 (20%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETP-LHIAARVGDPAIVSTILKYAP 120
             + +H+ I+   H  +  +L    +    NN     P + +A    D  ++  + K   
Sbjct: 161 LLSCIHITIKN-GHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFK--- 216

Query: 121 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 163
                                 +     V      + +M+++K
Sbjct: 217 ---YDIN-------------IYSANLENVLLDDAEIAKMIIEK 243

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 64.8 bits (159), Expect = 1e-13
 Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 22/135 (16%)

Query: 61  RGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAP 120
           RG T+LH+A   +      E L +  S     +  G TPLH A   G   +V  +L    
Sbjct: 9   RGETLLHIASI-KGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVE-LL---- 62

Query: 121 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG----YLNNAEQ 176
            + +            T  + ++PLH+A +N H ++V++L+       G     +N    
Sbjct: 63  -LQHKALVN------TTGYQNDSPLHDAAKNGHVDIVKLLLSY-----GASRNAVNIFGL 110

Query: 177 TPLSIAIDSSLTDIA 191
            P+    D S+  + 
Sbjct: 111 RPVDYTDDESMKSLL 125

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 56.3 bits (137), Expect = 2e-10
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 13/73 (17%)

Query: 91  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 150
            N+ +GET LHIA+  GD   V   L     + NG++        + D  G TPLH A  
Sbjct: 6   TNH-RGETLLHIASIKGDIPSV-EYL-----LQNGSDPN------VKDHAGWTPLHEACN 52

Query: 151 NKHENVVRMLVKK 163
           + H  VV +L++ 
Sbjct: 53  HGHLKVVELLLQH 65

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 55.5 bits (135), Expect = 3e-10
 Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 13/101 (12%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G T LH A     H  + E+L +  +L+    ++ ++PLH AA+ G   IV  +L     
Sbjct: 43  GWTPLHEACN-HGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIV-KLL----- 95

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK 162
           ++ G            +  G  P+        ++++ +  K
Sbjct: 96  LSYGASRN------AVNIFGLRPVDYTDDESMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 40.9 bits (97), Expect = 6e-05
 Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 15/53 (28%)

Query: 137 TDDEGNTPLHNAVRNKHENVVRMLVK-------KDRIPLGYLNNAEQTPLSIA 182
           T+  G T LH A        V  L++       KD        +A  TPL  A
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKD--------HAGWTPLHEA 50

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 37.8 bits (89), Expect = 7e-04
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 3/59 (5%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRD-SLLRKNNWKGETPLHIAARVGDPAIVSTILKYA 119
            ++ LH A +   H  I ++L     S    N   G  P+         +++    K  
Sbjct: 76  NDSPLHDAAK-NGHVDIVKLLLSYGASRNAVNI-FGLRPVDYTDDESMKSLLLLPEKNE 132

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 65.1 bits (160), Expect = 2e-13
 Identities = 23/141 (16%), Positives = 52/141 (36%), Gaps = 22/141 (15%)

Query: 61  RGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAP 120
             +  +H     +   +       +++++   + +G TPL  AA  G  A+V  +L+   
Sbjct: 2   ANSLSVHQLAA-QGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ--- 57

Query: 121 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG----YLNNAEQ 176
              NG + +      +      + L  A    + ++V+ML+       G      +    
Sbjct: 58  ---NGADPQ------LLGKGRESALSLACSKGYTDIVKMLLDC-----GVDVNEYDWNGG 103

Query: 177 TPLSIAIDSSLTDIACFIIDQ 197
           TPL  A+  +       +++ 
Sbjct: 104 TPLLYAVHGNHVKCVKMLLES 124

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 61.6 bits (151), Expect = 4e-12
 Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 13/102 (12%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
             + L +A   + +  I ++L      + + +W G TPL  A        V  +L     
Sbjct: 69  RESALSLACS-KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCV-KML----- 121

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 163
           + +G +        I  D G   +  AV   + +V +++   
Sbjct: 122 LESGADPT------IETDSGYNSMDLAVALGYRSVQQVIESH 157

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 66.0 bits (161), Expect = 3e-13
 Identities = 29/204 (14%), Positives = 68/204 (33%), Gaps = 28/204 (13%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWK-------GETPLHIAA---RVGDPAI 111
               L   +     + +  +L       +            G+T L  A    + G  A 
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 112 VSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK-------KD 164
           +  +L+     +   +    +       +G++ LH A+  +    V++LV+       + 
Sbjct: 62  IMPLLQID-KDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA 120

Query: 165 RIPLGYLNNAE-----QTPLSIAIDSSLTDIACFIIDQRPE--SLNHRLPEELTLLHSAV 217
                  +        + PLS+A  +   D+  ++++   +  SL        T+LH+ V
Sbjct: 121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV 180

Query: 218 MRQNYGE---PMIFISLNKCLSIV 238
           M  +       ++    +  L + 
Sbjct: 181 MIADNSPENSALVIHMYDGLLQMG 204

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 61.7 bits (150), Expect = 1e-11
 Identities = 33/169 (19%), Positives = 53/169 (31%), Gaps = 42/169 (24%)

Query: 61  RGNTVLHMAIRFRNHKVIPEIL-------------RRRDSLLRKNNWKGETPLHIAARVG 107
           +G++ LH+AI  +      ++L             R          + GE PL +AA   
Sbjct: 89  QGHSALHIAIE-KRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTK 147

Query: 108 DPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP 167
              +V+ +L+      +         L  TD  GNT LH  V                  
Sbjct: 148 QWDVVTYLLENPHQPAS---------LEATDSLGNTVLHALVMIAD-------------- 184

Query: 168 LGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSA 216
               N+ E + L I +   L  +   +             + LT L  A
Sbjct: 185 ----NSPENSALVIHMYDGLLQMGARLCPTVQ-LEEISNHQGLTPLKLA 228

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 60.2 bits (146), Expect = 4e-11
 Identities = 22/125 (17%), Positives = 41/125 (32%), Gaps = 12/125 (9%)

Query: 49  GRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSL---LRKNNWKGETPLHIAAR 105
              Q    T    G   L +A        +   L         L   +  G T LH    
Sbjct: 123 RFFQKHQGTCFYFGELPLSLAAC-TKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVM 181

Query: 106 VGDPAIVSTILKYAPAITNGTESEPESLLR------ITDDEGNTPLHNAVRNKHENVVRM 159
           + D +  ++ L     + +G       L        I++ +G TPL  A +     + R 
Sbjct: 182 IADNSPENSALVIH--MYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRH 239

Query: 160 LVKKD 164
           +++++
Sbjct: 240 ILQRE 244

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 65.2 bits (160), Expect = 3e-13
 Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 12/122 (9%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           GNT L++A+   N   I + L  R + +   N   ++P   A   G   I++ +LK+A  
Sbjct: 39  GNTPLNIAVH-NNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATP 97

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
             N             +  G   L  A    H + V++L++  R  + + N+   T L  
Sbjct: 98  DLN-----------KHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIE 146

Query: 182 AI 183
           A+
Sbjct: 147 AV 148

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 56.7 bits (138), Expect = 3e-10
 Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 28/136 (20%)

Query: 91  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 150
           K   +    L  A +     +   IL          + +        D EGNTPL+ AV 
Sbjct: 2   KTY-EVGALLEAANQRDTKKVKE-IL-----QDTTYQVD------EVDTEGNTPLNIAVH 48

Query: 151 NKHENVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLN 203
           N    + + L+        ++        +   +P   A     T+I  +++      LN
Sbjct: 49  NNDIEIAKALIDRGADINLQN--------SISDSPYLYAGAQGRTEILAYMLKHATPDLN 100

Query: 204 HRLPEELTLLHSAVMR 219
                    L  A  +
Sbjct: 101 KHNRYGGNALIPAAEK 116

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 54.4 bits (132), Expect = 3e-09
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 23/111 (20%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLR-------KNNWKGETPLHIAARVGDPAIVST 114
           G   L  A   + H    ++L     L         +N+  G T L  A  + +   +  
Sbjct: 106 GGNALIPAAE-KGHIDNVKLL-----LEDGREDIDFQND-FGYTALIEAVGLREGNQLYQ 158

Query: 115 -ILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKD 164
            I+K    + NG +        I D+ G T +  A +  +  + ++L + +
Sbjct: 159 DIVKLL--MENGADQS------IKDNSGRTAMDYANQKGYTEISKILAQYN 201

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 65.3 bits (160), Expect = 4e-13
 Identities = 28/137 (20%), Positives = 46/137 (33%), Gaps = 18/137 (13%)

Query: 61  RGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAP 120
             +T            +IP         + +     + PLH AA+ G+ + +   L    
Sbjct: 44  MSDTNWWKGTSKGRTGLIPSNY------VAEQAESIDNPLHEAAKRGNLSWLRECLDNR- 96

Query: 121 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLS 180
              N             D  G+T L+ A    H+++V ML  +  I L   N    T L 
Sbjct: 97  VGVN-----------GLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALH 145

Query: 181 IAIDSSLTDIACFIIDQ 197
            A      DI   ++ +
Sbjct: 146 AAAWKGYADIVQLLLAK 162

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 63.8 bits (156), Expect = 1e-12
 Identities = 26/159 (16%), Positives = 52/159 (32%), Gaps = 19/159 (11%)

Query: 61  RGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAP 120
            G   +  A+     +   E+      ++   +   +T        G   ++        
Sbjct: 11  PGQVKVFRALYTFEPRTPDELYIEEGDIIYITD-MSDTNWWKGTSKGRTGLI-------- 61

Query: 121 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLS 180
                    P + +    +  + PLH A +  + + +R  +   R+ +  L+ A  T L 
Sbjct: 62  ---------PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALY 111

Query: 181 IAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMR 219
            A      DI   +  Q    LN +     T LH+A  +
Sbjct: 112 WACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWK 150

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 62.6 bits (153), Expect = 4e-12
 Identities = 27/127 (21%), Positives = 43/127 (33%), Gaps = 25/127 (19%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKN------NWKGETPLHIAARVGDPAIVSTI 115
           G+T L+ A     HK I E+L       + N      N  G+T LH AA  G   IV  +
Sbjct: 106 GSTALYWACH-GGHKDIVEML-----FTQPNIELNQQNKLGDTALHAAAWKGYADIVQLL 159

Query: 116 LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE 175
           L    A T+           + + E       A      ++++     D +     N  +
Sbjct: 160 LAKG-ARTD-----------LRNIEKKLAFDMATNAACASLLKKKQGTDAVRT-LSNAED 206

Query: 176 QTPLSIA 182
                 +
Sbjct: 207 YLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 44.9 bits (107), Expect = 5e-06
 Identities = 13/98 (13%), Positives = 31/98 (31%), Gaps = 25/98 (25%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLR------KNNWKGETPLHIAARVGDPAIVSTI 115
           G+T LH A   + +  I ++L     L +      +N  + +    +A      +++   
Sbjct: 140 GDTALHAAAW-KGYADIVQLL-----LAKGARTDLRNI-EKKLAFDMATNAACASLLKKK 192

Query: 116 LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH 153
                  T            +++ E      ++    H
Sbjct: 193 QGTDAVRT------------LSNAEDYLDDEDSDLEHH 218

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 63.6 bits (156), Expect = 5e-13
 Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 22/126 (17%)

Query: 61  RGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAP 120
           R    L  A    + + +  +L R        N  G+T L +    G  AI   +LK   
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLK--- 56

Query: 121 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----Q 176
               G          + D  G +P+H+A R    + +++LV+      G   N       
Sbjct: 57  ---QGASPN------VQDTSGTSPVHDAARTGFLDTLKVLVEH-----GADVNVPDGTGA 102

Query: 177 TPLSIA 182
            P+ +A
Sbjct: 103 LPIHLA 108

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 63.6 bits (156), Expect = 6e-13
 Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 16/136 (11%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G T L + +       I   L ++ +     +  G +P+H AAR G    +  ++++  A
Sbjct: 36  GKTALQVMMF--GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHG-A 92

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
             N           + D  G  P+H AV+  H  VV  L  +  +     +    TPL +
Sbjct: 93  DVN-----------VPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRR--DARGLTPLEL 139

Query: 182 AIDSSLTDIACFIIDQ 197
           A+     D+   +   
Sbjct: 140 ALQRGAQDLVDILQGH 155

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 63.6 bits (156), Expect = 6e-13
 Identities = 35/142 (24%), Positives = 51/142 (35%), Gaps = 26/142 (18%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLR------KNNWKGETPLHIAARVGDPAIVSTI 115
           G T L +      +  I   L     LLR      K+   G   +H AAR G    +   
Sbjct: 38  GRTALQVMKL--GNPEIARRL-----LLRGANPDLKDRT-GFAVIHDAARAGFLDTLQ-T 88

Query: 116 LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE 175
           L     +    +        I D+EGN PLH A +  H  VV  LVK     +G+ N+  
Sbjct: 89  L-----LEFQADVN------IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG 137

Query: 176 QTPLSIAIDSSLTDIACFIIDQ 197
            T   +A      ++   +   
Sbjct: 138 DTACDLARLYGRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 63.2 bits (155), Expect = 9e-13
 Identities = 30/168 (17%), Positives = 54/168 (32%), Gaps = 29/168 (17%)

Query: 58  MSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILK 117
           M+      L  A   R        L + +  +   N  G T L +    G+P I    L 
Sbjct: 1   MAEPWGNELASAAA-RGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIA-RRL- 56

Query: 118 YAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV-------KKDRIPLGY 170
               +  G   +      + D  G   +H+A R    + ++ L+        +D      
Sbjct: 57  ----LLRGANPD------LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIED------ 100

Query: 171 LNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVM 218
             N    PL +A       +  F++     ++ HR  +  T    A +
Sbjct: 101 --NEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARL 146

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 64.9 bits (159), Expect = 6e-13
 Identities = 28/165 (16%), Positives = 52/165 (31%), Gaps = 31/165 (18%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G   L    R  N +            ++ N       L  ++  G+  +V    +    
Sbjct: 5   GQVSLPPGKR-TNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLEGEFDLV----QRI-- 56

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV-------KKDRIPLGYLNNA 174
           I    +        + +DEG T LHNAV   H  +V+ LV         D        + 
Sbjct: 57  IYEVDDPS------LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD--------SD 102

Query: 175 EQTPLSIAIDSSLTDIACFIIDQ--RPESLNHRLPEELTLLHSAV 217
             TPL  A   +   +  F+++      ++ +   +        +
Sbjct: 103 GWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEM 147

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 55.3 bits (134), Expect = 1e-09
 Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 11/121 (9%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G T LH A+    H  I + L +    +   +  G TPLH AA   +  +   +++   A
Sbjct: 70  GITALHNAVC-AGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA 128

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
           +   T S         D +        +   +    + L       +G +N      L  
Sbjct: 129 VFAMTYS---------DMQTAADKCEEMEEGYTQCSQFLYGVQ-EKMGIMNKGVIYALWD 178

Query: 182 A 182
            
Sbjct: 179 Y 179

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 38.7 bits (91), Expect = 6e-04
 Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 5/81 (6%)

Query: 138 DDEGNTPLHNAVRNKHENVVRMLVKKD-RIPLGYLNNAEQTPLSIAIDSSLTDIACFIID 196
           +  G   L    R          +    R+     N      L  +      D+   II 
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRV---KFNPLPLALLLDSSLEGEFDLVQRIIY 58

Query: 197 QRPESLNHRLPEELTLLHSAV 217
           +  +  +    E +T LH+AV
Sbjct: 59  EVDD-PSLPNDEGITALHNAV 78

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 63.9 bits (157), Expect = 8e-13
 Identities = 29/150 (19%), Positives = 50/150 (33%), Gaps = 40/150 (26%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLR------KNNWKGETPLHIAARVGDPAIVSTI 115
           G+T L  A++  N   I E L     L +      K+   G+TPL  +   G   +    
Sbjct: 68  GSTALIWAVK-NNRLGIAEKL-----LSKGSNVNTKDFS-GKTPLMWSIIFGYSEMS-YF 119

Query: 116 LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK-------KDRIPL 168
           L     + +G            + EG TPL  A +     +V+ L++       +D    
Sbjct: 120 L-----LEHGANVN------DRNLEGETPLIVASKYGRSEIVKKLLELGADISARD---- 164

Query: 169 GYLNNAEQTPLSIAIDSSLTDIACFIIDQR 198
                   T  + A      ++     + R
Sbjct: 165 ----LTGLTAEASARIFGRQEVIKIFTEVR 190

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 61.6 bits (151), Expect = 5e-12
 Identities = 27/143 (18%), Positives = 54/143 (37%), Gaps = 34/143 (23%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G  V  +    ++     + L        ++++   TPL +A  +G    +   L     
Sbjct: 8   GEIVEKIKDE-KSINQNLDFL-----RNYRDSY-NRTPLMVACMLGMENAID-KL----- 54

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK-------KDRIPLGYLNNA 174
           + N  + E        D EG+T L  AV+N    +   L+        KD         +
Sbjct: 55  VENFDKLE------DKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKD--------FS 100

Query: 175 EQTPLSIAIDSSLTDIACFIIDQ 197
            +TPL  +I    ++++ F+++ 
Sbjct: 101 GKTPLMWSIIFGYSEMSYFLLEH 123

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 62.8 bits (154), Expect = 9e-13
 Identities = 30/143 (20%), Positives = 48/143 (33%), Gaps = 29/143 (20%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
               L  A R         IL    +    +   G +PLH+AA+ G  +    +L     
Sbjct: 2   LGKKLLEAARA-GQDDEVRILMANGAPFTTDW-LGTSPLHLAAQYGHFSTT-EVL----- 53

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK-------KDRIPLGYLNNA 174
           +  G   +             TPLH A    H N+V +L+K       KD          
Sbjct: 54  LRAGVSRD------ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKD--------ML 99

Query: 175 EQTPLSIAIDSSLTDIACFIIDQ 197
           + T L  A + +  ++   +I  
Sbjct: 100 KMTALHWATEHNHQEVVELLIKY 122

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 62.4 bits (153), Expect = 1e-12
 Identities = 35/137 (25%), Positives = 53/137 (38%), Gaps = 28/137 (20%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G + LH+A +   H    E+L R             TPLH+AA  G   IV  +L     
Sbjct: 34  GTSPLHLAAQ-YGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVE-VL----- 86

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK-------KDRIPLGYLNNA 174
           + +G +          D    T LH A  + H+ VV +L+K       +           
Sbjct: 87  LKHGADVN------AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQS--------KF 132

Query: 175 EQTPLSIAIDSSLTDIA 191
            +T   I+ID+   D+A
Sbjct: 133 CKTAFDISIDNGNEDLA 149

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 55.1 bits (134), Expect = 5e-10
 Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 25/105 (23%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLR------KNNWKGETPLHIAARVGDPAIVSTI 115
             T LHMA     H  I E+L     L        K+     T LH A       +V  +
Sbjct: 67  DRTPLHMAAS-EGHANIVEVL-----LKHGADVNAKDML-KMTALHWATEHNHQEVVELL 119

Query: 116 LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRML 160
           +KY   +                    T    ++ N +E++  +L
Sbjct: 120 IKYGADVH------------TQSKFCKTAFDISIDNGNEDLAEIL 152

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 64.4 bits (158), Expect = 1e-12
 Identities = 30/136 (22%), Positives = 52/136 (38%), Gaps = 13/136 (9%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
             + LH A     H  I  +L +  + +   +    TPL  AA       V   L     
Sbjct: 11  KRSPLHAAAE-AGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK-YL----- 63

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
           I  G   +        D EG+T LH A +  H  VV+ L+   ++ +   ++   TP+  
Sbjct: 64  IKAGALVD------PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIW 117

Query: 182 AIDSSLTDIACFIIDQ 197
           A +    D+   ++ +
Sbjct: 118 ATEYKHVDLVKLLLSK 133

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 61.7 bits (151), Expect = 8e-12
 Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 31/145 (21%)

Query: 62  GNTVLHMAIRFRNHKVIPEIL--RRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYA 119
           G+T LH+A + + H  + + L    +  +  +++  G TP+  A       +V  +L   
Sbjct: 77  GSTCLHLAAK-KGHYEVVQYLLSNGQMDVNCQDD-GGWTPMIWATEYKHVDLV-KLL--- 130

Query: 120 PAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV-------KKDRIPLGYLN 172
             ++ G++        I D+E N  LH A  +   ++  +L+         +        
Sbjct: 131 --LSKGSDIN------IRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVN-------- 174

Query: 173 NAEQTPLSIAIDSSLTDIACFIIDQ 197
               +PL IA   +  D     + +
Sbjct: 175 IHGDSPLHIAARENRYDCVVLFLSR 199

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 59.0 bits (144), Expect = 9e-11
 Identities = 28/102 (27%), Positives = 38/102 (37%), Gaps = 13/102 (12%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
            N  LH A  F     I EIL      L   N  G++PLHIAAR      V  +      
Sbjct: 144 ENICLHWAA-FSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCV-VLF----- 196

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 163
           ++  ++        + + EG TPL  A  N        + K 
Sbjct: 197 LSRDSDVT------LKNKEGETPLQCASLNSQVWSALQMSKA 232

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 59.0 bits (144), Expect = 9e-11
 Identities = 28/141 (19%), Positives = 48/141 (34%), Gaps = 28/141 (19%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G T +  A     H  + ++L  + S +   + +    LH AA  G   I   IL     
Sbjct: 111 GWTPMIWATE-YKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAE-IL----- 163

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV-------KKDRIPLGYLNNA 174
           +    +          +  G++PLH A R    + V + +        K+          
Sbjct: 164 LAAKCDLH------AVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKN--------KE 209

Query: 175 EQTPLSIAIDSSLTDIACFII 195
            +TPL  A  +S    A  + 
Sbjct: 210 GETPLQCASLNSQVWSALQMS 230

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 55.9 bits (136), Expect = 1e-09
 Identities = 25/133 (18%), Positives = 44/133 (33%), Gaps = 28/133 (21%)

Query: 91  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 150
           ++     +PLH AA  G   I   +L     +  G   +         ++  TPL  A  
Sbjct: 7   EHQ-NKRSPLHAAAEAGHVDIC-HML-----VQAGANID------TCSEDQRTPLMEAAE 53

Query: 151 NKHENVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLN 203
           N H   V+ L+        KD            T L +A      ++  +++      +N
Sbjct: 54  NNHLEAVKYLIKAGALVDPKD--------AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVN 105

Query: 204 HRLPEELTLLHSA 216
            +     T +  A
Sbjct: 106 CQDDGGWTPMIWA 118

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 42.0 bits (100), Expect = 6e-05
 Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 136 ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFII 195
           +      +PLH A    H ++  MLV+     +   +  ++TPL  A +++  +   ++I
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQAG-ANIDTCSEDQRTPLMEAAENNHLEAVKYLI 64

Query: 196 DQRPESLNHRLPEELTLLHSAV 217
                 ++ +  E  T LH A 
Sbjct: 65  KAGAL-VDPKDAEGSTCLHLAA 85

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 64.4 bits (158), Expect = 1e-12
 Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 31/145 (21%)

Query: 62  GNTVLHMAIRFRNHKVIPEIL--RRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYA 119
           G T LH A+   + + + +IL   R   L  + +  G TPL +AAR+    ++   L   
Sbjct: 90  GRTPLHAAVS-ADAQGVFQILIRNRATDLDARMH-DGTTPLILAARLAVEGML-EDL--- 143

Query: 120 PAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK-------KDRIPLGYLN 172
             I +  +          DD G + LH A    + +   +L+K       ++        
Sbjct: 144 --INSHADVN------AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN-------- 187

Query: 173 NAEQTPLSIAIDSSLTDIACFIIDQ 197
           N E+TPL +A      + A  ++D 
Sbjct: 188 NREETPLFLAAREGSYETAKVLLDH 212

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 62.9 bits (154), Expect = 4e-12
 Identities = 28/149 (18%), Positives = 52/149 (34%), Gaps = 40/149 (26%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLR------KNNWKGETPLHIAARVGDPAIVSTI 115
           G T L +A R    + + E L     +         ++  G++ LH AA V +      +
Sbjct: 124 GTTPLILAAR-LAVEGMLEDL-----INSHADVNAVDDL-GKSALHWAAAVNNVDAAV-V 175

Query: 116 LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV-------KKDRIPL 168
           L     + NG   +      + ++   TPL  A R       ++L+         D    
Sbjct: 176 L-----LKNGANKD------MQNNREETPLFLAAREGSYETAKVLLDHFANRDITD---- 220

Query: 169 GYLNNAEQTPLSIAIDSSLTDIACFIIDQ 197
               + ++ P  IA +    DI   +  +
Sbjct: 221 ----HMDRLPRDIAQERMHHDIVRLLDLE 245

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 57.1 bits (139), Expect = 5e-10
 Identities = 29/141 (20%), Positives = 45/141 (31%), Gaps = 28/141 (19%)

Query: 91  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLR-------ITDDEGNT 143
           +    G TPL IA+  G                    +     +         TD  G T
Sbjct: 6   RGP-DGFTPLMIASCSGGGLETGNS-----EEEEDAPAVISDFIYQGASLHNQTDRTGET 59

Query: 144 PLHNAVRNKHENVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID 196
            LH A R    +  + L+        +D        N  +TPL  A+ +    +   +I 
Sbjct: 60  ALHLAARYSRSDAAKRLLEASADANIQD--------NMGRTPLHAAVSADAQGVFQILIR 111

Query: 197 QRPESLNHRLPEELTLLHSAV 217
            R   L+ R+ +  T L  A 
Sbjct: 112 NRATDLDARMHDGTTPLILAA 132

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 63.2 bits (155), Expect = 1e-12
 Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 21/125 (16%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
            +  +H          + E LR+ D+L+ K + +G TPL  A+  G+   V  +L+    
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE---- 57

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG----YLNNAEQT 177
              G +        I   E  + L  A    + ++V +L+++            +    T
Sbjct: 58  --WGADPH------ILAKERESALSLASTGGYTDIVGLLLER-----DVDINIYDWNGGT 104

Query: 178 PLSIA 182
           PL  A
Sbjct: 105 PLLYA 109

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 61.7 bits (151), Expect = 3e-12
 Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 13/102 (12%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
             + L +A     +  I  +L  RD  +   +W G TPL  A R      V  +L     
Sbjct: 69  RESALSLAST-GGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA---- 123

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 163
              G +           D G TP+  AV   +  V +++   
Sbjct: 124 --RGADLT------TEADSGYTPMDLAVALGYRKVQQVIENH 157

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 63.2 bits (154), Expect = 1e-12
 Identities = 16/108 (14%), Positives = 25/108 (23%), Gaps = 12/108 (11%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKN------NWKGETPLHIAARVGDPAIVSTI 115
           G T+     +      I          L K           +  +              I
Sbjct: 75  GTTLFFPLFQ-GGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMI 133

Query: 116 LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 163
             Y         S+    L I D  G T L    R +    ++M+   
Sbjct: 134 PLYKLIF-----SQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 61.6 bits (150), Expect = 5e-12
 Identities = 17/148 (11%), Positives = 39/148 (26%), Gaps = 21/148 (14%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKN------NWKGETPLHIAARVGDPAIVSTI 115
            + +L+  +R  N +   +I      L+ K         +G T      + G   I  T 
Sbjct: 38  KSNILYDVLRNNNDEARYKISMF---LINKGADIKSRTKEGTTLFFPLFQGGGNDITGTT 94

Query: 116 LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH------ENVVRMLVKKDRIPLG 169
                 +  G +      +          +   + N          + +++  +  + L 
Sbjct: 95  ELCKIFLEKGAD------ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL 148

Query: 170 YLNNAEQTPLSIAIDSSLTDIACFIIDQ 197
             +    T L              + D 
Sbjct: 149 IKDKWGLTALEFVKRCQKPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 21/172 (12%), Positives = 48/172 (27%), Gaps = 23/172 (13%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
               +  A     ++   E+  +      K +      L+   R  +      I  +   
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFL-- 61

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENV------VRMLVKKDRIPLGYLNNAE 175
           I  G +      ++    EG T      +    ++       ++ ++K    +  L    
Sbjct: 62  INKGAD------IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK-GADITALYKPY 114

Query: 176 QTPLSIAI------DSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQN 221
           +  +   I      ++ +  +   I  Q    L  +    LT L      Q 
Sbjct: 115 KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQK 166

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 8/65 (12%)

Query: 61  RGNTVLHMAIRFRNHKVIPEILRRRDSLLRKN-------NWKGETPLHIAARVGDPAIVS 113
               V+   I F       E++     +  ++       +  G T L    R   P  + 
Sbjct: 113 PYKIVVFKNI-FNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALK 171

Query: 114 TILKY 118
            +  Y
Sbjct: 172 MMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 11/100 (11%), Positives = 21/100 (21%), Gaps = 10/100 (10%)

Query: 92  NNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRN 151
           N       +  AA +G       + +        +  +         +     L N    
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFEKG-YEDKESVLK--------SNILYDVLRNNNDE 52

Query: 152 KHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA 191
               +   L+ K    +        T           DI 
Sbjct: 53  ARYKISMFLINKG-ADIKSRTKEGTTLFFPLFQGGGNDIT 91

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 62.8 bits (154), Expect = 1e-12
 Identities = 32/146 (21%), Positives = 47/146 (32%), Gaps = 34/146 (23%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLR------KNNWKGETPLHIAARVGDPAIVSTI 115
           G + LH A R      + E+L     ++R       N    +TPLH+AA  G   IV   
Sbjct: 39  GFSPLHWACRE-GRSAVVEML-----IMRGARINVMNR-GDDTPLHLAASHGHRDIVQ-K 90

Query: 116 LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG----YL 171
           L     +    +          ++ GN PLH A     + V   LV       G      
Sbjct: 91  L-----LQYKADIN------AVNEHGNVPLHYACFWGQDQVAEDLVAN-----GALVSIC 134

Query: 172 NNAEQTPLSIAIDSSLTDIACFIIDQ 197
           N   + P+  A       +       
Sbjct: 135 NKYGEMPVDKAKAPLRELLRERAEKM 160

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 62.1 bits (152), Expect = 3e-12
 Identities = 30/144 (20%), Positives = 53/144 (36%), Gaps = 23/144 (15%)

Query: 59  SPRGNTVLHMAIRFRNHKVIPEIL-RRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILK 117
           SP     +    R   + V   +     ++ L + +  G +PLH A R G  A+V  +L 
Sbjct: 2   SPEFMDDIFTQCR-EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVE-ML- 58

Query: 118 YAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG----YLNN 173
               I  G          + +   +TPLH A  + H ++V+ L++            +N 
Sbjct: 59  ----IMRGARIN------VMNRGDDTPLHLAASHGHRDIVQKLLQY-----KADINAVNE 103

Query: 174 AEQTPLSIAIDSSLTDIACFIIDQ 197
               PL  A       +A  ++  
Sbjct: 104 HGNVPLHYACFWGQDQVAEDLVAN 127

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 23/163 (14%), Positives = 43/163 (26%), Gaps = 23/163 (14%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
                        +  + +       +  +   +    LH  A  G  AI   I + +  
Sbjct: 61  SLYPNPQGYG-NGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVN 118

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYL-------NNA 174
           I             I      T LH    N        L+  +              +  
Sbjct: 119 I-------------IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCD 165

Query: 175 EQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAV 217
           E TPL +A+ +    +  +++    +        E + LH A 
Sbjct: 166 ENTPLMLAVLARRRRLVAYLMKAGAD-PTIYNKSERSALHQAA 207

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 25/178 (14%), Positives = 49/178 (27%), Gaps = 28/178 (15%)

Query: 61  RGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAP 120
                LH          I E + R    +        T LH  A          ++ +  
Sbjct: 93  ESPIKLHTEAA--GSYAITEPITRESVNIIDPRH-NRTVLHWIASNSSAEKSEDLIVHEA 149

Query: 121 A--ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV-------KKDRIPLGYL 171
              I  G +          D + NTPL  AV  +   +V  L+         +       
Sbjct: 150 KECIAAGADVN------AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYN------- 196

Query: 172 NNAEQTPLSIAIDSSLTDIACFIIDQRPE--SLNHRLPEELTLLHSAVMRQNYGEPMI 227
             +E++ L  A  +    +  ++++       +       +T L      +   +   
Sbjct: 197 -KSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVAS 253

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 62.7 bits (153), Expect = 9e-12
 Identities = 28/156 (17%), Positives = 50/156 (32%), Gaps = 36/156 (23%)

Query: 62  GNTVLHMAIRFRNHKVIP----------EILRRRDSLLRKNNWKGETPLHIAARVGDPAI 111
           G T L +         +           ++     +      +KG T LH AA+V +  I
Sbjct: 235 GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPI 294

Query: 112 VSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV-------KKD 164
           V  ++    +  +             D++G TP+  A +     VV  L+         D
Sbjct: 295 VKYLVGEKGSNKD-----------KQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVD 343

Query: 165 RIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPE 200
                     + T   +A  ++  +I       RPE
Sbjct: 344 --------ATDHTARQLAQANNHHNIVDIFDRCRPE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 25/142 (17%), Positives = 48/142 (33%), Gaps = 11/142 (7%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLL----RKNNWKGETPLHIAARVGDPAIVSTILK 117
             + LH A        +   +     L       +   G T L I A       V+   K
Sbjct: 199 ERSALHQAAA-NRDFGMMVYMLNSTKLKGDIEELDR-NGMTALMIVAHNEGRDQVA-SAK 255

Query: 118 YAPAITNG--TESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE 175
               +  G   + +  +       +G T LH A +  +  +V+ LV +        +   
Sbjct: 256 LL--VEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDG 313

Query: 176 QTPLSIAIDSSLTDIACFIIDQ 197
           +TP+ +A      ++  ++I Q
Sbjct: 314 KTPIMLAAQEGRIEVVMYLIQQ 335

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 14/130 (10%), Positives = 28/130 (21%), Gaps = 26/130 (20%)

Query: 71  RFRNHKVI--PEILR-RRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTE 127
           R   +  +  P +    ++    ++    +  L  A+  G        L           
Sbjct: 9   RRMINASVWMPPMENEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNEL----------- 57

Query: 128 SEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSL 187
                           P      N ++ +        +IP           L      S 
Sbjct: 58  ----------QHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTE-PEPESPIKLHTEAAGSY 106

Query: 188 TDIACFIIDQ 197
             I   I  +
Sbjct: 107 -AITEPITRE 115

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 63.2 bits (155), Expect = 2e-12
 Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 31/145 (21%)

Query: 62  GNTVLHMAIRFRNHKVIPEIL--RRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYA 119
           G T LH A+   + + + +IL   R   L  + +  G TPL +AAR+    ++  ++   
Sbjct: 58  GRTPLHAAVS-ADAQGVFQILIRNRATDLDARMH-DGTTPLILAARLAVEGMLEDLINSH 115

Query: 120 PAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK-------KDRIPLGYLN 172
            A  N             DD G + LH A    + +   +L+K       ++        
Sbjct: 116 -ADVN-----------AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN-------- 155

Query: 173 NAEQTPLSIAIDSSLTDIACFIIDQ 197
           N E+TPL +A      + A  ++D 
Sbjct: 156 NREETPLFLAAREGSYETAKVLLDH 180

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 63.2 bits (155), Expect = 3e-12
 Identities = 28/149 (18%), Positives = 52/149 (34%), Gaps = 40/149 (26%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLR------KNNWKGETPLHIAARVGDPAIVSTI 115
           G T L +A R    + + E L     +         ++  G++ LH AA V +      +
Sbjct: 92  GTTPLILAAR-LAVEGMLEDL-----INSHADVNAVDD-LGKSALHWAAAVNNVDAAV-V 143

Query: 116 LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV-------KKDRIPL 168
           L     + NG   +      + ++   TPL  A R       ++L+         D    
Sbjct: 144 L-----LKNGANKD------MQNNREETPLFLAAREGSYETAKVLLDHFANRDITD---- 188

Query: 169 GYLNNAEQTPLSIAIDSSLTDIACFIIDQ 197
               + ++ P  IA +    DI   + + 
Sbjct: 189 ----HMDRLPRDIAQERMHHDIVRLLDEY 213

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 62.8 bits (154), Expect = 3e-12
 Identities = 28/149 (18%), Positives = 49/149 (32%), Gaps = 39/149 (26%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLR------KNNWKGETPLHIAARVGDPAIVSTI 115
           G T LH+A R+ +     + L     L        ++N  G TPLH A       +   +
Sbjct: 25  GETALHLAARY-SRSDAAKRL-----LEASADANIQDN-MGRTPLHAAVSADAQGVFQIL 77

Query: 116 LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV-------KKDRIPL 168
           ++      +               +G TPL  A R   E ++  L+         D    
Sbjct: 78  IRNRATDLD-----------ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD---- 122

Query: 169 GYLNNAEQTPLSIAIDSSLTDIACFIIDQ 197
               +  ++ L  A   +  D A  ++  
Sbjct: 123 ----DLGKSALHWAAAVNNVDAAVVLLKN 147

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 45.5 bits (109), Expect = 3e-06
 Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 15/89 (16%)

Query: 136 ITDDEGNTPLHNAVRNKHENVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLT 188
            TD  G T LH A R    +  + L+        +D        N  +TPL  A+ +   
Sbjct: 20  QTDRTGETALHLAARYSRSDAAKRLLEASADANIQD--------NMGRTPLHAAVSADAQ 71

Query: 189 DIACFIIDQRPESLNHRLPEELTLLHSAV 217
            +   +I  R   L+ R+ +  T L  A 
Sbjct: 72  GVFQILIRNRATDLDARMHDGTTPLILAA 100

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 60.8 bits (149), Expect = 3e-12
 Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 28/143 (19%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G T LH+A R   H  + ++L    + +   +  G TPLH+AAR G   +V  +L     
Sbjct: 2   GRTPLHLAAR-NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK-LL----- 54

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV-------KKDRIPLGYLNNA 174
           +  G +          D  G TPLH A RN H  VV++L+        KD          
Sbjct: 55  LEAGADVN------AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD--------KN 100

Query: 175 EQTPLSIAIDSSLTDIACFIIDQ 197
            +TPL +A  +   ++   +++ 
Sbjct: 101 GRTPLHLAARNGHLEVVKLLLEA 123

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 62.2 bits (151), Expect = 5e-12
 Identities = 36/169 (21%), Positives = 58/169 (34%), Gaps = 15/169 (8%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
             T LH A     H  I E L +    +   +  G +PLHIAA  G   IV  +L     
Sbjct: 40  SRTALHWACS-AGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH 98

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
           +               +  G TPLH A       +  ML++         ++ + T +  
Sbjct: 99  VN------------AVNQNGCTPLHYAASKNRHEIAVMLLEGG-ANPDAKDHYDATAMHR 145

Query: 182 AIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFIS 230
           A       +   ++  +    N +  E  T LH A   +   E    ++
Sbjct: 146 AAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVT 193

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 60.3 bits (146), Expect = 3e-11
 Identities = 35/155 (22%), Positives = 54/155 (34%), Gaps = 15/155 (9%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G + LH+A        I + L  + + +   N  G TPLH AA      I   +L+    
Sbjct: 73  GWSPLHIAA-SAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
                           D    T +H A    +  +V +L+          +    TPL +
Sbjct: 132 PD------------AKDHYDATAMHRAAAKGNLKMVHILLFYK-ASTNIQDTEGNTPLHL 178

Query: 182 AIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSA 216
           A D    + A F++ Q    +     EE T L  A
Sbjct: 179 ACDEERVEEAKFLVTQGAS-IYIENKEEKTPLQVA 212

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 52.6 bits (126), Expect = 2e-08
 Identities = 24/147 (16%), Positives = 48/147 (32%), Gaps = 28/147 (19%)

Query: 91  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 150
           +         ++A       +   I      + + + +        TD +  T LH A  
Sbjct: 2   EGCVSNIMICNLAYSGKLDELKERI------LADKSLAT------RTDQDSRTALHWACS 49

Query: 151 NKHENVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLN 203
             H  +V  L+        KD        +A  +PL IA  +   +I   ++ +    +N
Sbjct: 50  AGHTEIVEFLLQLGVPVNDKD--------DAGWSPLHIAASAGXDEIVKALLVKGAH-VN 100

Query: 204 HRLPEELTLLHSAVMRQNYGEPMIFIS 230
                  T LH A  +  +   ++ + 
Sbjct: 101 AVNQNGCTPLHYAASKNRHEIAVMLLE 127

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 51.0 bits (122), Expect = 4e-08
 Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 16/136 (11%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G T LH A   +N   I  +L    +     +    T +H AA  G+  +V  +L Y  +
Sbjct: 106 GCTPLHYAAS-KNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS 164

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
                         I D EGNTPLH A   +     + LV +    +   N  E+TPL +
Sbjct: 165 TN------------IQDTEGNTPLHLACDEERVEEAKFLVTQG-ASIYIENKEEKTPLQV 211

Query: 182 AIDSSLTDIACFIIDQ 197
           A       +    + +
Sbjct: 212 A--KGGLGLILKRLAE 225

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 61.4 bits (150), Expect = 6e-12
 Identities = 22/132 (16%), Positives = 37/132 (28%), Gaps = 37/132 (28%)

Query: 61  RGNTVLHMAIRFRNHKVIPEILRRRDSLLRKN---NWKGETPLHIAARVGDPAIVSTILK 117
            G     +  +   H                      + ETP   AAR  D   +S +L+
Sbjct: 13  EGAMEYLIEWK-DGHSPSWVPS------SYIAADVVSEYETPWWTAARKADEQALSQLLE 65

Query: 118 YAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK-------KDRIPLGY 170
                      + ++     D+ G T L        +  VR+L +       +D      
Sbjct: 66  DR---------DVDA----VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD------ 106

Query: 171 LNNAEQTPLSIA 182
                 T L +A
Sbjct: 107 -MRGGLTALHMA 117

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 55.6 bits (135), Expect = 6e-10
 Identities = 19/108 (17%), Positives = 32/108 (29%), Gaps = 24/108 (22%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLR------KNNWKGETPLHIAARVGDPAIVSTI 115
           G T L              +L              ++   G T LH+AA    P +V  +
Sbjct: 76  GRTALLFVAG-LGSDKCVRLL-----AEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL 129

Query: 116 LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 163
           ++       G + E      + D+ G T L  A            ++ 
Sbjct: 130 VE------LGADIE------VEDERGLTALELAREILKTTPKGNPMQF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 51.7 bits (125), Expect = 2e-08
 Identities = 23/137 (16%), Positives = 35/137 (25%), Gaps = 32/137 (23%)

Query: 90  RKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAV 149
           R    +G     I  + G            P+     +            E  TP   A 
Sbjct: 9   RTAG-EGAMEYLIEWKDGHSPSWV------PSSYIAAD---------VVSEYETPWWTAA 52

Query: 150 RNKHENVVRMLVK------KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLN 203
           R   E  +  L++       D           +T L              + +   + L+
Sbjct: 53  RKADEQALSQLLEDRDVDAVD--------ENGRTALLFVAGLGSDKCVRLLAEAGAD-LD 103

Query: 204 HRLPEE-LTLLHSAVMR 219
           HR     LT LH A   
Sbjct: 104 HRDMRGGLTALHMAAGY 120

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 42.1 bits (100), Expect = 4e-05
 Identities = 17/108 (15%), Positives = 27/108 (25%), Gaps = 42/108 (38%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLR------KNNWKGETPLHIAARVGDPAIVSTI 115
           G T LHMA        + E L     +        ++   G T L +A  +         
Sbjct: 110 GLTALHMAAG-YVRPEVVEAL-----VELGADIEVEDER-GLTALELAREILKTTPK--- 159

Query: 116 LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 163
                                       P+    R   E V+ +L  +
Sbjct: 160 --------------------------GNPMQFGRRIGLEKVINVLEGQ 181

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 62.5 bits (153), Expect = 7e-12
 Identities = 29/163 (17%), Positives = 57/163 (34%), Gaps = 22/163 (13%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
             + +H A     H++    L  +   +        +PLH A   G  + V  IL     
Sbjct: 59  DWSPMHEAAIH-GHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVK-IL----- 111

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG---YLNNAEQTP 178
           + +G +            + +TPL NA  +   + V +L++      G      +   +P
Sbjct: 112 LKHGAQVN------GVTADWHTPLFNACVSGSWDCVNLLLQH-----GASVQPESDLASP 160

Query: 179 LSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQN 221
           +  A      +    +I      ++H++    T L+ A   Q 
Sbjct: 161 IHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQ 202

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 62.5 bits (153), Expect = 8e-12
 Identities = 26/140 (18%), Positives = 52/140 (37%), Gaps = 24/140 (17%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
            +T L  A           +L +  + ++  +    +P+H AAR G    V   L     
Sbjct: 125 WHTPLFNACV-SGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECV-NSL----- 176

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK----DRIPLGYLNNAEQT 177
           I  G   +             TPL+ A  N+    V+ L++     ++         + +
Sbjct: 177 IAYGGNID------HKISHLGTPLYLACENQQRACVKKLLESGADVNQ------GKGQDS 224

Query: 178 PLSIAIDSSLTDIACFIIDQ 197
           PL   + ++  ++AC ++D 
Sbjct: 225 PLHAVVRTASEELACLLMDF 244

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 61.0 bits (149), Expect = 3e-11
 Identities = 23/125 (18%), Positives = 39/125 (31%), Gaps = 23/125 (18%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
             + +H A R R H      L      +        TPL++A      A V   L     
Sbjct: 157 LASPIHEAAR-RGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVK-KL----- 209

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK----DRIPLGYLNNAEQT 177
           + +G +              ++PLH  VR   E +  +L+              N   + 
Sbjct: 210 LESGADVN-------QGKGQDSPLHAVVRTASEELACLLMDFGADTQAK-----NAEGKR 257

Query: 178 PLSIA 182
           P+ + 
Sbjct: 258 PVELV 262

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 56.7 bits (138), Expect = 7e-10
 Identities = 27/140 (19%), Positives = 46/140 (32%), Gaps = 29/140 (20%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G+        F   +++        + L  +     +P+H AA  G    +   L     
Sbjct: 33  GSKPAGPRD-FPGIRLL-------SNPLMGDAVSDWSPMHEAAIHGHQLSL-RNL----- 78

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG----YLNNAEQT 177
           I+ G          I   +  +PLH A    H + V++L+K      G     +     T
Sbjct: 79  ISQGWAVN------IITADHVSPLHEACLGGHLSCVKILLKH-----GAQVNGVTADWHT 127

Query: 178 PLSIAIDSSLTDIACFIIDQ 197
           PL  A  S   D    ++  
Sbjct: 128 PLFNACVSGSWDCVNLLLQH 147

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 56.0 bits (136), Expect = 1e-09
 Identities = 13/97 (13%), Positives = 29/97 (29%), Gaps = 14/97 (14%)

Query: 61  RGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAP 120
              T L++A      +   + L    + + +     ++PLH   R     +   ++ +  
Sbjct: 189 HLGTPLYLACE-NQQRACVKKLLESGADVNQGKG-QDSPLHAVVRTASEELACLLMDFG- 245

Query: 121 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 157
           A T              + EG  P+           +
Sbjct: 246 ADTQ-----------AKNAEGKRPVELVPPESPLAQL 271

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 43.2 bits (103), Expect = 3e-05
 Identities = 16/121 (13%), Positives = 36/121 (29%), Gaps = 21/121 (17%)

Query: 96  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 155
           G  P       G   + + ++                          +P+H A  + H+ 
Sbjct: 33  GSKPAGPRDFPGIRLLSNPLM-------------------GDAVSDWSPMHEAAIHGHQL 73

Query: 156 VVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHS 215
            +R L+ +    +  +     +PL  A           ++    + +N    +  T L +
Sbjct: 74  SLRNLISQG-WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFN 131

Query: 216 A 216
           A
Sbjct: 132 A 132

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 60.8 bits (149), Expect = 8e-12
 Identities = 34/143 (23%), Positives = 48/143 (33%), Gaps = 28/143 (19%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
               L  A R         IL    + +   +  G TPLH+AA  G   IV  +L     
Sbjct: 14  LGKKLLEAAR-AGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVE-VL----- 66

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK-------KDRIPLGYLNNA 174
           + NG +          D  G TPL  A    H  +V +L+K        D          
Sbjct: 67  LKNGADVN------AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAND--------ME 112

Query: 175 EQTPLSIAIDSSLTDIACFIIDQ 197
             TPL +A      +I   ++  
Sbjct: 113 GHTPLHLAAMFGHLEIVEVLLKN 135

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 59.7 bits (146), Expect = 2e-11
 Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 13/103 (12%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G T L +A     H  I E+L +  + +  N+ +G TPLH+AA  G   IV  +L     
Sbjct: 80  GMTPLRLAAL-FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVE-VL----- 132

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKD 164
           + NG +          D  G T    ++ N +E++  +L K +
Sbjct: 133 LKNGADVN------AQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 62.1 bits (152), Expect = 1e-11
 Identities = 28/140 (20%), Positives = 45/140 (32%), Gaps = 22/140 (15%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
                         +   + L        ++   G T LH+AA  G   ++  +L     
Sbjct: 166 IEAARKEE-ERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVL-KLL----- 218

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG----YLNNAEQT 177
           I    +      + I D +G TPLH A     E   R+LV+            +N   QT
Sbjct: 219 IQARYD------VNIKDYDGWTPLHAAAHWGKEEACRILVEN-----LCDMEAVNKVGQT 267

Query: 178 PLSIAIDSSLTDIACFIIDQ 197
              +A +  L  +      Q
Sbjct: 268 AFDVADEDILGYLEELQKKQ 287

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 61.7 bits (151), Expect = 1e-11
 Identities = 31/155 (20%), Positives = 53/155 (34%), Gaps = 21/155 (13%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G T LH A    ++  + + L    + + + + +G  PLH AA  G   I    L     
Sbjct: 73  GLTALHQACID-DNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAE-YL----- 125

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
           I+ G        +   + EG+TPL  A     E +++  V +  + +       +     
Sbjct: 126 ISQGAH------VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI-------EAARKE 172

Query: 182 AIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSA 216
                L D   ++                T LH A
Sbjct: 173 EERIMLRDARQWLNSGHIN-DVRHAKSGGTALHVA 206

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 58.7 bits (143), Expect = 2e-10
 Identities = 26/144 (18%), Positives = 45/144 (31%), Gaps = 29/144 (20%)

Query: 61  RGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAP 120
           +      +  R+   +   E    +    +            A   GD   V  +L+   
Sbjct: 7   KQKRNEQLK-RWIGSETDLEPPVVKRKKTKVKF-DDGAVFLAACSSGDTEEVLRLLE--- 61

Query: 121 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV-------KKDRIPLGYLNN 173
               G +          + +G T LH A  + + ++V+ LV       + D        N
Sbjct: 62  ---RGADIN------YANVDGLTALHQACIDDNVDMVKFLVENGANINQPD--------N 104

Query: 174 AEQTPLSIAIDSSLTDIACFIIDQ 197
               PL  A      DIA ++I Q
Sbjct: 105 EGWIPLHAAASCGYLDIAEYLISQ 128

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 56.7 bits (138), Expect = 9e-10
 Identities = 32/164 (19%), Positives = 56/164 (34%), Gaps = 30/164 (18%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLR------KNNWKGETPLHIAARVGDPAIVSTI 115
              V   A            L     L R       N   G T LH A    +  +V   
Sbjct: 40  DGAVFLAACS-SGDTEEVLRL-----LERGADINYANV-DGLTALHQACIDDNVDMVK-F 91

Query: 116 LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK--DRIPLGYLNN 173
           L     + NG            D+EG  PLH A    + ++   L+ +      +G +N+
Sbjct: 92  L-----VENGANIN------QPDNEGWIPLHAAASCGYLDIAEYLISQGAH---VGAVNS 137

Query: 174 AEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAV 217
              TPL IA + ++ ++    ++++   +     EE  ++    
Sbjct: 138 EGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDA 181

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 48.7 bits (117), Expect = 4e-07
 Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 18/119 (15%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G T LH+A   + +  + ++L +    +   ++ G TPLH AA  G       IL     
Sbjct: 199 GGTALHVAAA-KGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEAC-RIL----- 251

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLS 180
           + N  +      +   +  G T    A  +    +  +  K+       L++ ++   S
Sbjct: 252 VENLCD------MEAVNKVGQTAFDVADEDILGYLEELQKKQ-----NLLHSEKREKKS 299

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 40.2 bits (95), Expect = 3e-04
 Identities = 19/132 (14%), Positives = 41/132 (31%), Gaps = 23/132 (17%)

Query: 89  LRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNA 148
           ++  + K +    +   +G    +       P +    +++          +       A
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDL------EPPVVKRKKTK-------VKFDDGAVFLAA 47

Query: 149 VRNKHENVVRMLVKKDRIPLG----YLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNH 204
             +     V  L+++     G    Y N    T L  A      D+  F+++     +N 
Sbjct: 48  CSSGDTEEVLRLLER-----GADINYANVDGLTALHQACIDDNVDMVKFLVENGAN-INQ 101

Query: 205 RLPEELTLLHSA 216
              E    LH+A
Sbjct: 102 PDNEGWIPLHAA 113

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 60.9 bits (149), Expect = 2e-11
 Identities = 28/135 (20%), Positives = 44/135 (32%), Gaps = 41/135 (30%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLL-------RKNNWKGETPLHIAARVGDPAIVST 114
             T+LH A    N   + +        +       +       TPLH A R G  ++V  
Sbjct: 42  NVTLLHWAAI-NNRIDLVKYY------ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVV- 93

Query: 115 ILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV-------KKDRIP 167
            L     +  G +        + D EG + +H A +  H ++V  L+         D   
Sbjct: 94  QL-----MKYGADPS------LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMD--- 139

Query: 168 LGYLNNAEQTPLSIA 182
                    TPL  A
Sbjct: 140 -----QNGMTPLMWA 149

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 60.5 bits (148), Expect = 3e-11
 Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 13/103 (12%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRD-SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAP 120
           G T L  A    +      +L   + S+   + +   T LH A   G+  ++S +L    
Sbjct: 142 GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS-LL---- 196

Query: 121 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 163
            +  G   +        + +G + L  A + K+  ++  L + 
Sbjct: 197 -LEAGANVD------AQNIKGESALDLAKQRKNVWMINHLQEA 232

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 57.4 bits (140), Expect = 3e-10
 Identities = 31/145 (21%), Positives = 57/145 (39%), Gaps = 28/145 (19%)

Query: 61  RGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAP 120
             +T LH A R + H  +   L +  +     + +G + +H+AA+ G  +IV+  L    
Sbjct: 75  LNSTPLHWATR-QGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVA-YL---- 128

Query: 121 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHE-NVVRMLVK-------KDRIPLGYLN 172
            I  G + +      + D  G TPL  A    H  +  R+L+         D        
Sbjct: 129 -IAKGQDVD------MMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGD-------K 174

Query: 173 NAEQTPLSIAIDSSLTDIACFIIDQ 197
             + T L  A+ +  T +   +++ 
Sbjct: 175 YHKNTALHWAVLAGNTTVISLLLEA 199

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 57.4 bits (140), Expect = 3e-10
 Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 27/143 (18%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
               +  A ++         L      +R+ + +  T LH AA      +V    KY   
Sbjct: 9   STWDIVKATQY-GIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLV----KY--Y 61

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV-------KKDRIPLGYLNNA 174
           I+ G   +     ++  D  +TPLH A R  H ++V  L+         D          
Sbjct: 62  ISKGAIVD-----QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLID--------GE 108

Query: 175 EQTPLSIAIDSSLTDIACFIIDQ 197
             + + +A     T I  ++I +
Sbjct: 109 GCSCIHLAAQFGHTSIVAYLIAK 131

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 55.1 bits (134), Expect = 2e-09
 Identities = 17/114 (14%), Positives = 33/114 (28%), Gaps = 27/114 (23%)

Query: 91  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 150
            ++      +  A + G        L     +  G +      +R  D E  T LH A  
Sbjct: 5   IDD-YSTWDIVKATQYGIYERCR-EL-----VEAGYD------VRQPDKENVTLLHWAAI 51

Query: 151 NKHENVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 197
           N   ++V+  +       +          +   TPL  A       +   ++  
Sbjct: 52  NNRIDLVKYYISKGAIVDQLG-------GDLNSTPLHWATRQGHLSMVVQLMKY 98

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 57.4 bits (140), Expect = 2e-11
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G T LH+A R   H  + ++L    + +   +  G TPLH+AAR G   +V  +L     
Sbjct: 2   GRTPLHLAAR-NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK-LL----- 54

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 163
           +  G +          D  G TPLH A RN H  VV++L++ 
Sbjct: 55  LEAGADVN------AKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 60.7 bits (148), Expect = 2e-11
 Identities = 23/130 (17%), Positives = 39/130 (30%), Gaps = 35/130 (26%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRR--DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYA 119
           G     +  +   H            D      + + ETP   AAR  D   +S +L+  
Sbjct: 15  GAMEYLIEWK-DGHSPSWVPSSYIAAD----VVS-EYETPWWTAARKADEQALSQLLEDR 68

Query: 120 PAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK-------KDRIPLGYLN 172
                    + ++     D+ G T L        +  VR+L +       +D        
Sbjct: 69  ---------DVDA----VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD-------M 108

Query: 173 NAEQTPLSIA 182
               T L +A
Sbjct: 109 RGGLTALHMA 118

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 59.2 bits (144), Expect = 8e-11
 Identities = 25/169 (14%), Positives = 47/169 (27%), Gaps = 36/169 (21%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLR------KNNWKGETPLHIAARVGDPAIVSTI 115
           G T L              +L              ++   G T LH+AA    P +V  +
Sbjct: 77  GRTALLFVAG-LGSDKCVRLL-----AEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL 130

Query: 116 LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK-------KDRIPL 168
           ++       G + E      + D+ G T L  A            ++       +  I +
Sbjct: 131 VE------LGADIE------VEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINV 178

Query: 169 GYLNNAE-QTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSA 216
                 E      I           +++  +    +    E +  +H A
Sbjct: 179 LEGQVFEYAEVDEIVEKRGKGKDVEYLVRWK----DGGDCEWVKGVHVA 223

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 55.3 bits (134), Expect = 2e-09
 Identities = 25/134 (18%), Positives = 37/134 (27%), Gaps = 23/134 (17%)

Query: 96  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI---TDDEGNTPLHNAVRNK 152
           GE    I +R          ++Y     +G          I      E  TP   A R  
Sbjct: 1   GEVNKIIGSRTAG----EGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKA 56

Query: 153 HENVVRMLVK------KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRL 206
            E  +  L++       D           +T L              + +   + L+HR 
Sbjct: 57  DEQALSQLLEDRDVDAVD--------ENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRD 107

Query: 207 PE-ELTLLHSAVMR 219
               LT LH A   
Sbjct: 108 MRGGLTALHMAAGY 121

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 59.3 bits (145), Expect = 2e-11
 Identities = 31/144 (21%), Positives = 46/144 (31%), Gaps = 29/144 (20%)

Query: 62  GNTVLHMAIRFRNHKVIPEIL-RRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAP 120
            +  L  A +        + L   +    R    +  TPLH AA     ++V   L    
Sbjct: 8   ADRQLLEAAK-AGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVV-EYL---- 61

Query: 121 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK-------KDRIPLGYLNN 173
            + +G +          D  G  PLHNA    H  V  +LVK        D         
Sbjct: 62  -LQHGADVH------AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD--------L 106

Query: 174 AEQTPLSIAIDSSLTDIACFIIDQ 197
            + TPL  A      +I   ++  
Sbjct: 107 WKFTPLHEAAAKGKYEICKLLLQH 130

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 58.6 bits (143), Expect = 4e-11
 Identities = 33/150 (22%), Positives = 49/150 (32%), Gaps = 41/150 (27%)

Query: 61  RGNTVLHMAIRFRNHKVIPEILRRRDSLLR------KNNWKGETPLHIAARVGDPAIVST 114
           R +T LH A  + N   + E L     L        K+   G  PLH A   G   +   
Sbjct: 41  RQSTPLHFAAGY-NRVSVVEYL-----LQHGADVHAKDKG-GLVPLHNACSYGHYEVA-E 92

Query: 115 ILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV-------KKDRIP 167
           +L     + +G          + D    TPLH A       + ++L+       KK+   
Sbjct: 93  LL-----VKHGAVVN------VADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN--- 138

Query: 168 LGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 197
                    TPL +  D    DI   +   
Sbjct: 139 -----RDGNTPLDLVKDGDT-DIQDLLRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 52.4 bits (127), Expect = 7e-09
 Identities = 21/112 (18%), Positives = 34/112 (30%), Gaps = 26/112 (23%)

Query: 93  NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 152
           N + +  L  AA+ GD   V  +                      +   +TPLH A    
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRD-----------IEGRQSTPLHFAAGYN 53

Query: 153 HENVVRMLVK-------KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 197
             +VV  L++       KD             PL  A      ++A  ++  
Sbjct: 54  RVSVVEYLLQHGADVHAKD--------KGGLVPLHNACSYGHYEVAELLVKH 97

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 58.6 bits (143), Expect = 3e-11
 Identities = 23/136 (16%), Positives = 38/136 (27%), Gaps = 31/136 (22%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLR------KNNWKGETPLHIAARVGDPAIVSTI 115
           G   + + +       + E+L     LL        +      P+H AAR G    +  +
Sbjct: 45  GRRPIQVMMM--GSARVAELL-----LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVL 97

Query: 116 LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE 175
            +       G   +      + D  G  P+  A    H +V R L               
Sbjct: 98  HR------AGARLD------VRDAWGRLPVDLAEELGHRDVARYLRAA-----AGGTRG- 139

Query: 176 QTPLSIAIDSSLTDIA 191
                I      +DI 
Sbjct: 140 SNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 55.2 bits (134), Expect = 6e-10
 Identities = 23/141 (16%), Positives = 43/141 (30%), Gaps = 24/141 (17%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
               L  A   R        L    +     N  G  P+ +    G   +   +L     
Sbjct: 12  SADWLATAAA-RGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLL---- 65

Query: 122 ITNGTESEPESLLRITDDEGNT-PLHNAVRNKHENVVRMLVKKDRIPLG----YLNNAEQ 176
             +G E          D    T P+H+A R    + + +L +      G      +   +
Sbjct: 66  --HGAEPN------CADPATLTRPVHDAAREGFLDTLVVLHRA-----GARLDVRDAWGR 112

Query: 177 TPLSIAIDSSLTDIACFIIDQ 197
            P+ +A +    D+A ++   
Sbjct: 113 LPVDLAEELGHRDVARYLRAA 133

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 49.0 bits (118), Expect = 1e-07
 Identities = 11/69 (15%), Positives = 18/69 (26%), Gaps = 13/69 (18%)

Query: 95  KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE 154
                L  AA  G    V  +L+       G            +  G  P+   +     
Sbjct: 11  PSADWLATAAARGRVEEVRALLE------AGANPN------APNSYGRRPIQVMMMG-SA 57

Query: 155 NVVRMLVKK 163
            V  +L+  
Sbjct: 58  RVAELLLLH 66

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 9/51 (17%)

Query: 136 ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG----YLNNAEQTPLSIA 182
            + +     L  A        VR L++      G      N+  + P+ + 
Sbjct: 7   SSMEPSADWLATAAARGRVEEVRALLEA-----GANPNAPNSYGRRPIQVM 52

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 57.8 bits (141), Expect = 5e-11
 Identities = 32/141 (22%), Positives = 49/141 (34%), Gaps = 28/141 (19%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
               L  A R         IL    + +   +  G TPL++A   G   IV  +L     
Sbjct: 14  LGKKLLEAAR-AGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIV-EVL----- 66

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK-------KDRIPLGYLNNA 174
           + NG +          D  G TPLH A    H  +  +L+K       +D          
Sbjct: 67  LKNGADVN------AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQD--------KF 112

Query: 175 EQTPLSIAIDSSLTDIACFII 195
            +T   I+I +   D+A  + 
Sbjct: 113 GKTAFDISIGNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 55.5 bits (135), Expect = 3e-10
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 25/109 (22%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLR------KNNWKGETPLHIAARVGDPAIVSTI 115
           G T L++A     H  I E+L     L         +   G TPLH+AA +G   I   +
Sbjct: 47  GLTPLYLATAH-GHLEIVEVL-----LKNGADVNAVDAI-GFTPLHLAAFIGHLEIAE-V 98

Query: 116 LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKD 164
           L     + +G +          D  G T    ++ N +E++  +L K +
Sbjct: 99  L-----LKHGADVN------AQDKFGKTAFDISIGNGNEDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 47.8 bits (115), Expect = 2e-07
 Identities = 26/109 (23%), Positives = 38/109 (34%), Gaps = 27/109 (24%)

Query: 96  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 155
               L  AAR G    V  IL     + NG +          D+ G TPL+ A  + H  
Sbjct: 14  LGKKLLEAARAGQDDEV-RIL-----MANGADVN------AKDEYGLTPLYLATAHGHLE 61

Query: 156 VVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 197
           +V +L+         D            TPL +A      +IA  ++  
Sbjct: 62  IVEVLLKNGADVNAVD--------AIGFTPLHLAAFIGHLEIAEVLLKH 102

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 56.6 bits (138), Expect = 7e-11
 Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 13/102 (12%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           GNT LH A +   H    + L  + + +   +  G TPLH+AA+ G   IV  +L     
Sbjct: 9   GNTPLHNAAK-NGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVK-LL----- 61

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 163
           +  G +            +GNTP H A +N H  +V++L  K
Sbjct: 62  LAKGADVN------ARSKDGNTPEHLAKKNGHHEIVKLLDAK 97

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 51.2 bits (124), Expect = 8e-09
 Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 27/98 (27%)

Query: 92  NNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRN 151
            +  G TPLH AA+ G    V   L     ++ G +            +GNTPLH A +N
Sbjct: 5   GSKDGNTPLHNAAKNGHAEEVK-KL-----LSKGADVN------ARSKDGNTPLHLAAKN 52

Query: 152 KHENVVRMLV-------KKDRIPLGYLNNAEQTPLSIA 182
            H  +V++L+        +             TP  +A
Sbjct: 53  GHAEIVKLLLAKGADVNARS--------KDGNTPEHLA 82

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 40.8 bits (97), Expect = 4e-05
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 9/51 (17%)

Query: 136 ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG----YLNNAEQTPLSIA 182
               +GNTPLHNA +N H   V+ L+ K     G      +    TPL +A
Sbjct: 4   WGSKDGNTPLHNAAKNGHAEEVKKLLSK-----GADVNARSKDGNTPLHLA 49

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 40.1 bits (95), Expect = 8e-05
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 13/85 (15%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           GNT LH+A +   H  I ++L  + + +   +  G TP H+A + G   IV  +L     
Sbjct: 42  GNTPLHLAAK-NGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVK-LL----- 94

Query: 122 ITNGTESEPESLLRITDDEGNTPLH 146
              G +              +   H
Sbjct: 95  DAKGADVN------ARSWGSSHHHH 113

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 56.8 bits (138), Expect = 7e-11
 Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 17/104 (16%)

Query: 93  NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 152
                  L  AAR G    V  IL     + NG +          D  G+TPLH A RN 
Sbjct: 21  GSDLGKKLLEAARAGQDDEVR-IL-----MANGADVA------AKDKNGSTPLHLAARNG 68

Query: 153 HENVVRMLVKK--DRIPLGYLNNAEQTPLSIAIDSSLTDIACFI 194
           H  VV++L++   D   +   +   +T   I+ID+   D+A  +
Sbjct: 69  HLEVVKLLLEAGAD---VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 59.6 bits (144), Expect = 8e-11
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 10/107 (9%)

Query: 89  LRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNA 148
           L   +   ET LH+A R  D   +  +      + N         L     +G+T LH  
Sbjct: 162 LANGHEPDETALHLAVRSVDRTSLHIVDF---LVQNSGN------LDKQTGKGSTALHYC 212

Query: 149 VRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFII 195
               +   +++L++  +  +   N + +TPL IA           + 
Sbjct: 213 CLTDNAECLKLLLRG-KASIEIANESGETPLDIAKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 56.5 bits (136), Expect = 8e-10
 Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 14/109 (12%)

Query: 56  STMSPRGNTVLHMAIR--FRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVS 113
           +       T LH+A+R   R    I + L +    L K   KG T LH      +   + 
Sbjct: 163 ANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLK 222

Query: 114 TILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK 162
            +L+   +I             I ++ G TPL  A R KHE+   +L +
Sbjct: 223 LLLRGKASIE------------IANESGETPLDIAKRLKHEHCEELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 60  PRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYA 119
            +G+T LH      ++    ++L R  + +   N  GETPL IA R+        + +  
Sbjct: 203 GKGSTALHYCCL-TDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQAL 261

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 56.6 bits (138), Expect = 8e-11
 Identities = 18/115 (15%), Positives = 31/115 (26%), Gaps = 28/115 (24%)

Query: 90  RKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAV 149
              +   +     A + GD   V    K    +  G +         T + G  PLH A 
Sbjct: 2   PLGS-MCDKEFMWALKNGDLDEV----KDY--VAKGEDVN------RTLEGGRKPLHYAA 48

Query: 150 RNKHENVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 197
                 ++  L+         D            TPL  A+          ++ +
Sbjct: 49  DCGQLEILEFLLLKGADINAPD--------KHHITPLLSAVYEGHVSCVKLLLSK 95

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 47.4 bits (114), Expect = 2e-07
 Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 13/97 (13%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G   LH A        I E L  + + +   +    TPL  A   G  + V    K    
Sbjct: 40  GRKPLHYAADC-GQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCV----KLL-- 92

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVR 158
           ++ G +        +   +G T          + +++
Sbjct: 93  LSKGADKT------VKGPDGLTAFEATDNQAIKALLQ 123

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 56.7 bits (138), Expect = 1e-10
 Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 25/108 (23%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLR------KNNWKGETPLHIAARVGDPAIVSTI 115
           G   + + +       + E+L     LL        +      P+H AAR G    +  +
Sbjct: 45  GRRPIQVMMM--GSAQVAELL-----LLHGAEPNCADPATLTRPVHDAAREGFLDTLV-V 96

Query: 116 LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 163
           L        G   +      + D  G  P+  A    H ++ R L   
Sbjct: 97  L-----HRAGARLD------VCDAWGRLPVDLAEEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 49.7 bits (120), Expect = 4e-08
 Identities = 11/73 (15%), Positives = 19/73 (26%), Gaps = 13/73 (17%)

Query: 91  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 150
                 +  L  AA  G    V   L     +  G +          +  G  P+   + 
Sbjct: 7   MLGGSSDAGLATAAARGQVETV-RQL-----LEAGADPN------ALNRFGRRPIQVMMM 54

Query: 151 NKHENVVRMLVKK 163
                V  +L+  
Sbjct: 55  G-SAQVAELLLLH 66

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 41.7 bits (99), Expect = 3e-05
 Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 9/51 (17%)

Query: 136 ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG----YLNNAEQTPLSIA 182
           +     +  L  A        VR L++      G     LN   + P+ + 
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLEA-----GADPNALNRFGRRPIQVM 52

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 59.6 bits (144), Expect = 1e-10
 Identities = 19/137 (13%), Positives = 41/137 (29%), Gaps = 18/137 (13%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTI--LKYA 119
               +H A +  N   + +++ +          +G   L    R  D  ++  I  L   
Sbjct: 250 RLKEMHDAFKLSNPDGVFDLVTK------SECLQGFYMLRNLIRRNDEVLLDDIRFLLSI 303

Query: 120 PAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPL 179
           P I     +           + N  L  A+R  ++    +L+    +    L   +    
Sbjct: 304 PGIKALAPTA------TIPGDANELLRLALRLGNQGACALLLSIPSV----LALTKANNY 353

Query: 180 SIAIDSSLTDIACFIID 196
            I       D+    ++
Sbjct: 354 YINETGGRLDLRAVALE 370

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 17/126 (13%), Positives = 37/126 (29%), Gaps = 15/126 (11%)

Query: 61  RGNTVLHMAIR---FRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILK 117
           +   +  +A           +  +L   D +++    +      +AA  G   +++ + +
Sbjct: 91  KSEVICFVAAITGCSSALDTL-CLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE 149

Query: 118 YAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE-Q 176
            AP               +   E       A  N H +V+  L +        +  AE  
Sbjct: 150 LAPTEIMA----------MIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENY 199

Query: 177 TPLSIA 182
                A
Sbjct: 200 YAFRWA 205

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 44.2 bits (104), Expect = 2e-05
 Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 10/97 (10%)

Query: 87  SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLH 146
           S   K   K E    +AA  G  + +   L     +T+    +      +   E      
Sbjct: 83  SDAHKKGIKSEVICFVAAITGCSSALD-TLCLL--LTSDEIVK------VIQAENYQAFR 133

Query: 147 NAVRNKHENVVRMLVKK-DRIPLGYLNNAEQTPLSIA 182
            A  N H +V+  L +      +  +         +A
Sbjct: 134 LAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLA 170

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 56.5 bits (137), Expect = 6e-10
 Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 27/115 (23%)

Query: 90  RKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAV 149
           R+        L  AA  G+  +V    + A  +    +          ++EG T LHNA+
Sbjct: 15  RRARLNPLVLLLDAALTGELEVV----QQA--VKEMNDPS------QPNEEGITALHNAI 62

Query: 150 RNKHENVVRMLV-------KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 197
              + ++V  L+         D        +   TPL  A   + T I   ++  
Sbjct: 63  CGANYSIVDFLITAGANVNSPD--------SHGWTPLHCAASCNDTVICMALVQH 109

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 26/123 (21%), Positives = 43/123 (34%), Gaps = 15/123 (12%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G T LH AI    +  I + L    + +   +  G TPLH AA   D  I    L     
Sbjct: 54  GITALHNAI-CGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVIC-MAL----- 106

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNK--HENVVRMLVKKDRIPLGYLNNAEQTPL 179
           + +G       +   T  +G T        +  + +    L   ++  +G +N+     L
Sbjct: 107 VQHGAA-----IFATTLSDGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGAVYAL 160

Query: 180 SIA 182
              
Sbjct: 161 WDY 163

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 20/119 (16%), Positives = 26/119 (21%), Gaps = 24/119 (20%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRD-SLLRKNNWKGETPLHIAARV--GDPAIVSTILK- 117
           G T LH A    N  VI   L +   ++       G T          G     + +   
Sbjct: 87  GWTPLHCAAS-CNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADV 145

Query: 118 -----------YAPAITNGTESEPESLLRI--------TDDEGNTPLHNAVRNKHENVV 157
                               E   E   R          D    T    A  +  E  V
Sbjct: 146 EQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 57.3 bits (138), Expect = 6e-10
 Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 10/117 (8%)

Query: 90  RKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAV 149
                  E  LH+A +V + A +  +      I NG        L     +GNT LH A 
Sbjct: 184 PDAQAPEELVLHLAVKVANQASLPLV---DFIIQNGGH------LDAKAADGNTALHYAA 234

Query: 150 RNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRL 206
                + +++L+K  R  +G +N A +T L IA      +    +   +  +    L
Sbjct: 235 LYNQPDCLKLLLKG-RALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPL 290

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 41.5 bits (97), Expect = 9e-05
 Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 4/110 (3%)

Query: 12  GTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQN--IFSTMSPRGNTVLHMA 69
           G D+ +P    +     +  L   ++  ++  + L+   +QN       +  GNT LH A
Sbjct: 174 GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYA 233

Query: 70  IRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYA 119
             +     + ++L +  +L+   N  GET L IA +         +L+ A
Sbjct: 234 ALYNQPDCL-KLLLKGRALVGTVNEAGETALDIARKKHHKECE-ELLEQA 281

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 55.8 bits (134), Expect = 2e-09
 Identities = 26/166 (15%), Positives = 41/166 (24%), Gaps = 47/166 (28%)

Query: 61  RGNTVLHMAIRFRN---HKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILK 117
            G + L  A++  N         +L      L   +    T LH           S   K
Sbjct: 163 MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAK 222

Query: 118 Y----------------------------APAITNGTESEPESLLR---------ITDDE 140
           Y                                    +S  E+L             D  
Sbjct: 223 YYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN 282

Query: 141 GNTPLHNAVRNKHENVVRMLVKKD---RIPLGYLNNAEQTPLSIAI 183
           G+T L+ A R  + ++V  L+       I     N +   P+    
Sbjct: 283 GDTCLNIAARLGNISIVDALLDYGADPFIA----NKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 46.6 bits (110), Expect = 2e-06
 Identities = 23/129 (17%), Positives = 37/129 (28%), Gaps = 20/129 (15%)

Query: 59  SPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKY 118
             +    L   + F   + +P  L    S                +       V+     
Sbjct: 60  KMKLEAFLQRLL-FPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPN 118

Query: 119 APAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG----YLNNA 174
                N             D+ GNTPLH      +  +V+ LVK      G    Y +N 
Sbjct: 119 TQLNLN----------IPVDEHGNTPLHWLTSIANLELVKHLVKH-----GSNRLYGDNM 163

Query: 175 EQTPLSIAI 183
            ++ L  A+
Sbjct: 164 GESCLVKAV 172

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 50.9 bits (121), Expect = 1e-07
 Identities = 32/154 (20%), Positives = 50/154 (32%), Gaps = 17/154 (11%)

Query: 59  SPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKY 118
                T L  A    N  +  E L +  + + + +  G  PLH A  +G   +    LK 
Sbjct: 232 GQDNATPLIQATA-ANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKR 290

Query: 119 APAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTP 178
                          L   D EG  PL  A+   + ++V +L       +     A+   
Sbjct: 291 GAD------------LGARDSEGRDPLTIAMETANADIVTLLRLA---KMREAEAAQGQA 335

Query: 179 LSIAIDSSLTDIACFIIDQRPESLNHRLPEELTL 212
                     D +    D  PE L+ R  +  TL
Sbjct: 336 GDETYLDIFRDFSLMASDD-PEKLSRRSHDLHTL 368

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 2e-06
 Identities = 47/323 (14%), Positives = 93/323 (28%), Gaps = 108/323 (33%)

Query: 5   SFEMTEFGTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGR------MQNIFSTM 58
            F M+   T+ ++P+M   +       L N  +   ++ +S    R      ++     +
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS----RLQPYLKLRQALLEL 147

Query: 59  SPRGNTVLH-MA---------------------------IRFRNHKVIPEILRRRDSLLR 90
            P  N ++  +                            +  +N      +L     LL 
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 91  KNNWKGETPLHIAARVGDP-----AIVSTILKYAPAITNGTESEPESLL----------- 134
           + +    +    ++ +        A +  +LK  P            LL           
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP--------YENCLLVLLNVQNAKAW 259

Query: 135 -------RI---TDDEGNTPLHNAVRNKH---ENVVRMLVKKDRIPL--GYLNNAEQT-- 177
                  +I   T  +  T   +A    H   ++    L   +   L   YL+   Q   
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319

Query: 178 -------PLSIAIDSSLTDIACFIIDQ--RPESLNHRLPEELT--------LLHSAVMRQ 220
                  P  ++I      IA  I D     ++  H   ++LT        +L  A  R+
Sbjct: 320 REVLTTNPRRLSI------IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373

Query: 221 NYGEPMIF-----ISLNKCLSIV 238
            +    +F     I     LS++
Sbjct: 374 MFDRLSVFPPSAHIPT-ILLSLI 395

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 3e-05
 Identities = 34/222 (15%), Positives = 74/222 (33%), Gaps = 67/222 (30%)

Query: 2   IL---RSFEMTEF--GTDYKEPTMDQELPTTMDHELLNVLRR---------------GDE 41
           IL   R  ++T+F         ++D    T    E+ ++L +                + 
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327

Query: 42  HQISLIAGRMQNIFST-------MSPRGNTVLHMAIRFRNHKVIPEILRRR-DSL--LRK 91
            ++S+IA  +++  +T          +  T++  ++        P   R+  D L     
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE----PAEYRKMFDRLSVFPP 383

Query: 92  NNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPE---------SLLRITDDEGN 142
           +        HI      P I+ +++       +  +S+           SL+     E  
Sbjct: 384 S-------AHI------PTILLSLI-----WFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425

Query: 143 TPLHN---AVRNKHENVV---RMLVKKDRIPLGYLNNAEQTP 178
             + +    ++ K EN     R +V    IP  + ++    P
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	238
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	100.0
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	100.0
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.98
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.98
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.98
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.98
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.96
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.95
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.95
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.94
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.94
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.93
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.93
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.93
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.93
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.93
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.93
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.92
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.92
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.92
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.92
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.91
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.91
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.9
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.9
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.89
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.89
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.88
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.88
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.83
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.8

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=3.2e-42  Score=251.27  Aligned_cols=217  Identities=18%  Similarity=0.164  Sum_probs=193.4

Q ss_pred             chhhhhhhccccCCCCCCCCCCCCCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHH
Q 026423            4 RSFEMTEFGTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILR   83 (238)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~   83 (238)
                      ++.+++++.++... ++.......+.+|||+|+..|+.+++++|+++|.++ +..+..|.||||+|+..|+.+++++|++
T Consensus         2 g~~~~i~~Ll~~g~-~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   79 (223)
T 2f8y_A            2 DAPAVISDFIYQGA-SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIR   79 (223)
T ss_dssp             ---CCEETTEETTC-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHcCC-CcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            35566666655433 233333345666899999999999999999999999 8889999999999999999999999998


Q ss_pred             cCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 026423           84 RRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK  163 (238)
Q Consensus        84 ~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~  163 (238)
                      ..+..++.++..|.||||+|+..++.+++++|+++++++.            ..+..|.||||+|+..|+.+++++|++.
T Consensus        80 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  147 (223)
T 2f8y_A           80 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN------------AVDDLGKSALHWAAAVNNVDAAVVLLKN  147 (223)
T ss_dssp             BTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT------------CBCTTSCBHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCc------------CcCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence            7777889999999999999999999999999999987754            5788999999999999999999999999


Q ss_pred             CCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccC
Q 026423          164 DRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLS  236 (238)
Q Consensus       164 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~  236 (238)
                      |+++ +..+..|.||||+|+..|+.+++++|+++| ++++.+|..|.||+++|+.+++.+++++|+++|+..+
T Consensus       148 g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          148 GANK-DMQNNREETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             TCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred             CCCC-CCcCCCCcCHHHHHHHcCCHHHHHHHHHcC-CCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence            9988 788999999999999999999999999999 9999999999999999999999999999999998754

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=4.9e-42  Score=258.64  Aligned_cols=209  Identities=20%  Similarity=0.230  Sum_probs=185.5

Q ss_pred             CCCCHHHHHHHHcCCHHHHHHHHhhhhc---cccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHH
Q 026423           26 TTMDHELLNVLRRGDEHQISLIAGRMQN---IFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHI  102 (238)
Q Consensus        26 ~~~~~~l~~A~~~~~~~~v~~Ll~~~~~---~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~  102 (238)
                      ..+.||||+|+..|+.+++++|+++|.+   + +..+..|.||||+|+..|+.+++++|+ ..+.+++.++..|.||||+
T Consensus         7 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~~~~g~tpL~~   84 (282)
T 1oy3_D            7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYL-DLQNDLGQTALHLAAILGEASTVEKLY-AAGAGVLVAERGGHTALHL   84 (282)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGG-GCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCSSCCCTTSCCHHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccc-cccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHH
Confidence            4455699999999999999999999988   5 788899999999999999999999999 5778889999999999999


Q ss_pred             HHHhCCHHHHHHHHhhCccccCCCCC-----------------------------------CCcccccccCCCCCcHHHH
Q 026423          103 AARVGDPAIVSTILKYAPAITNGTES-----------------------------------EPESLLRITDDEGNTPLHN  147 (238)
Q Consensus       103 a~~~~~~~~~~~ll~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~l~~  147 (238)
                      |+..++.+++++|+++++........                                   .....++..+..|.||||+
T Consensus        85 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  164 (282)
T 1oy3_D           85 ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHV  164 (282)
T ss_dssp             HTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHH
T ss_pred             HHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHH
Confidence            99999999999999988653221110                                   0123366788899999999


Q ss_pred             HHHcCCHHHHHHHHHcCCccccccC-CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhH
Q 026423          148 AVRNKHENVVRMLVKKDRIPLGYLN-NAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPM  226 (238)
Q Consensus       148 a~~~~~~~~~~~ll~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~  226 (238)
                      |+..|+.+++++|++.|+++ +..+ ..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+.+++.++++
T Consensus       165 A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~~v~  242 (282)
T 1oy3_D          165 AVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLRPNPILAR  242 (282)
T ss_dssp             HHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTSSCHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHHcC-CCCcccccCCCCHHHHHHHcCCcHHHH
Confidence            99999999999999999998 5555 45999999999999999999999998 999999999999999999999999999


Q ss_pred             HhhhcccccCCC
Q 026423          227 IFISLNKCLSIV  238 (238)
Q Consensus       227 ~L~~~g~~~~~~  238 (238)
                      +|+++|++++.+
T Consensus       243 ~Ll~~ga~~~~~  254 (282)
T 1oy3_D          243 LLRAHGAPEPED  254 (282)
T ss_dssp             HHHHTTCCCCCC
T ss_pred             HHHHcCCCcCcC
Confidence            999999999863

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.6e-40  Score=244.48  Aligned_cols=195  Identities=23%  Similarity=0.256  Sum_probs=181.4

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhC
Q 026423           28 MDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVG  107 (238)
Q Consensus        28 ~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~  107 (238)
                      +.+|||.|+..|+.+++++|+++|.++ +..+..|.||||+|+..|+.+++++|+ ..+.+++.++..|.||||+|+..|
T Consensus        11 g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~   88 (237)
T 3b7b_A           11 KRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLI-KAGALVDPKDAEGSTCLHLAAKKG   88 (237)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHH-TTTCCCCCCCTTSCCHHHHHHHTT
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHcCCCc-CccCCCCCCHHHHHHHhCCHHHHHHHH-hCCCCCCCCCCCCCcHHHHHHHcC
Confidence            445899999999999999999999999 888999999999999999999999999 677788899999999999999999


Q ss_pred             CHHHHHHHHhhC-ccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcC
Q 026423          108 DPAIVSTILKYA-PAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSS  186 (238)
Q Consensus       108 ~~~~~~~ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  186 (238)
                      +.+++++|++++ .+            ++..+..|.||||+|+..++.+++++|++.|+++ +..+..|.||||+|+..|
T Consensus        89 ~~~~~~~Ll~~~~~~------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~  155 (237)
T 3b7b_A           89 HYEVVQYLLSNGQMD------------VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSG  155 (237)
T ss_dssp             CHHHHHHHHTTTCCC------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHC
T ss_pred             CHHHHHHHHhCCCCC------------cccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCC
Confidence            999999999988 33            2357788999999999999999999999999988 788999999999999999


Q ss_pred             cHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCCC
Q 026423          187 LTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV  238 (238)
Q Consensus       187 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~~  238 (238)
                      +.+++++|++.| ++++.+|..|.||||+|+..++.+++++|+++|++++++
T Consensus       156 ~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~  206 (237)
T 3b7b_A          156 CVDIAEILLAAK-CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLK  206 (237)
T ss_dssp             CHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCC
T ss_pred             CHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCcc
Confidence            999999999999 999999999999999999999999999999999998763

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.1e-40  Score=249.83  Aligned_cols=231  Identities=13%  Similarity=0.110  Sum_probs=194.9

Q ss_pred             chhhhhhhccccCCCCCCCCCCCCCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHH
Q 026423            4 RSFEMTEFGTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILR   83 (238)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~   83 (238)
                      ++++++++.++.. .+++......+.+|||+|+..|+.+++++|+++|.++ +..+..|.||||+|+..|+.+++++|+ 
T Consensus        16 g~~~~v~~Ll~~g-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll-   92 (285)
T 1wdy_A           16 EDVDLVQQLLEGG-ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAIAGSVKLLKLFL-   92 (285)
T ss_dssp             TCHHHHHHHHHTT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHH-
T ss_pred             CCHHHHHHHHHcC-CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHH-
Confidence            4566666655443 2233333445566899999999999999999999998 888899999999999999999999999 


Q ss_pred             cCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCC----------CCC----------------------c
Q 026423           84 RRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTE----------SEP----------------------E  131 (238)
Q Consensus        84 ~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~----------~~~----------------------~  131 (238)
                      ..+.+++.++..|.||||+|+..|+.+++++|+++++++.....          .+.                      .
T Consensus        93 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~  172 (285)
T 1wdy_A           93 SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG  172 (285)
T ss_dssp             HTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSC
T ss_pred             HcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcC
Confidence            56777888899999999999999999999999999887654321          110                      3


Q ss_pred             ccccccCCCCCcHHHHHHHcCC----HHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCC
Q 026423          132 SLLRITDDEGNTPLHNAVRNKH----ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLP  207 (238)
Q Consensus       132 ~~~~~~~~~~~~~l~~a~~~~~----~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~  207 (238)
                      ..++..+..|.||||+|+..++    .+++++|++.|+++ +..+..|.||||+|++.|+.+++++|++..+++++.+|.
T Consensus       173 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~  251 (285)
T 1wdy_A          173 ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS  251 (285)
T ss_dssp             CCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCT
T ss_pred             CCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCC
Confidence            3456678889999999999999    89999999999988 788999999999999999999999999944499999999


Q ss_pred             CCCcHHHHHHHhcCcchhHHhhhcccccCCC
Q 026423          208 EELTLLHSAVMRQNYGEPMIFISLNKCLSIV  238 (238)
Q Consensus       208 ~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~~  238 (238)
                      .|.||||+|+..++.+++++|+++|++++.+
T Consensus       252 ~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~  282 (285)
T 1wdy_A          252 DGKTALLLAVELKLKKIAELLCKRGASTDCG  282 (285)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHSSCSCCS
T ss_pred             CCCcHHHHHHHcCcHHHHHHHHHcCCCCCcc
Confidence            9999999999999999999999999999864

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=5e-41  Score=249.48  Aligned_cols=213  Identities=18%  Similarity=0.158  Sum_probs=181.0

Q ss_pred             hhhhhhhccccCCCCCCCCCCCCCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHc
Q 026423            5 SFEMTEFGTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRR   84 (238)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~   84 (238)
                      +.+++++.++.... ........+.+|||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++.
T Consensus        35 ~~~~v~~Ll~~g~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  112 (253)
T 1yyh_A           35 APAVISDFIYQGAS-LHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRN  112 (253)
T ss_dssp             ------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHS
T ss_pred             ChHHHHHHHHccCC-cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            45666665544322 22222345666899999999999999999999999 88899999999999999999999999977


Q ss_pred             CccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 026423           85 RDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKD  164 (238)
Q Consensus        85 ~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~  164 (238)
                      ++.+++.++..|.||||+|+..++.+++++|+++|+++.            ..+..|.||||+|+..|+.+++++|++.|
T Consensus       113 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g  180 (253)
T 1yyh_A          113 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN------------AVDDLGKSALHWAAAVNNVDAAVVLLKNG  180 (253)
T ss_dssp             TTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTT------------CBCTTSCBHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCC------------CcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            776889999999999999999999999999999987754            57889999999999999999999999999


Q ss_pred             CccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhccc
Q 026423          165 RIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNK  233 (238)
Q Consensus       165 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~  233 (238)
                      +++ +..+..|.||||+|+..|+.+++++|+++| ++++.+|..|.||+++|+.+|+.+++++|.+...
T Consensus       181 a~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~  247 (253)
T 1yyh_A          181 ANK-DMQNNREETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHH  247 (253)
T ss_dssp             CCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC---
T ss_pred             CCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcC-CCccccccCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence            998 788999999999999999999999999999 9999999999999999999999999999987644

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.2e-40  Score=243.74  Aligned_cols=198  Identities=18%  Similarity=0.234  Sum_probs=179.3

Q ss_pred             CHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCc-ccccc-CCCCCCcHHHHHHHh
Q 026423           29 DHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRD-SLLRK-NNWKGETPLHIAARV  106 (238)
Q Consensus        29 ~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~-~~~~~-~~~~g~~~l~~a~~~  106 (238)
                      .+|||.|+..|+.+++++|++.+.++....+..|.||||+|+..|+.+++++|++.+. .+++. .+..|.||||+|+..
T Consensus         3 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~   82 (228)
T 2dzn_A            3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   82 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             ccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHc
Confidence            4589999999999999999999998866689999999999999999999999996541 44444 788999999999999


Q ss_pred             CCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcC
Q 026423          107 GDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSS  186 (238)
Q Consensus       107 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  186 (238)
                      |+.+++++|++++....          ++..+..|.||||+|+..++.+++++|++.|+++ +..+..|.||||+|+..|
T Consensus        83 ~~~~~~~~Ll~~g~~~~----------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~  151 (228)
T 2dzn_A           83 GNLEVVKSLYDRPLKPD----------LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVG  151 (228)
T ss_dssp             CCHHHHHHHHSSSSCCC----------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTT
T ss_pred             CCHHHHHHHHhCCCCcc----------cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcC
Confidence            99999999999883221          3357888999999999999999999999999988 788999999999999999


Q ss_pred             cHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhh-hcccccCC
Q 026423          187 LTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFI-SLNKCLSI  237 (238)
Q Consensus       187 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~-~~g~~~~~  237 (238)
                      +.+++++|++.|+++++.+|..|+||||+|+..++.+++++|+ ++|+++++
T Consensus       152 ~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~  203 (228)
T 2dzn_A          152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL  203 (228)
T ss_dssp             CHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCC
T ss_pred             CHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCc
Confidence            9999999999998899999999999999999999999999999 99999875

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.7e-41  Score=252.03  Aligned_cols=198  Identities=18%  Similarity=0.201  Sum_probs=157.0

Q ss_pred             CCCHHHHHHHHcC-------------CHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCC
Q 026423           27 TMDHELLNVLRRG-------------DEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNN   93 (238)
Q Consensus        27 ~~~~~l~~A~~~~-------------~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~   93 (238)
                      .+.||||+|+..|             +.+++++|+++|.++....+..|.||||+|+..|+.+++++|+ ..+.+++.++
T Consensus         9 ~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~   87 (253)
T 1yyh_A            9 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL-EASADANIQD   87 (253)
T ss_dssp             -------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCC
T ss_pred             CCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCCC
Confidence            4556999999987             8999999999999996667899999999999999999999999 5678889999


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCC
Q 026423           94 WKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNN  173 (238)
Q Consensus        94 ~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~  173 (238)
                      ..|.||||+|+..++.+++++|++++...           ++..+..|.||||+|+..++.+++++|++.|+++ +..+.
T Consensus        88 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~  155 (253)
T 1yyh_A           88 NMGRTPLHAAVSADAQGVFQILIRNRATD-----------LDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDD  155 (253)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHSTTSC-----------TTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT-TCBCT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-----------ccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-CCcCC
Confidence            99999999999999999999999988521           2367889999999999999999999999999988 78899


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCCC
Q 026423          174 AEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV  238 (238)
Q Consensus       174 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~~  238 (238)
                      .|.||||+|+..|+.+++++|++.| ++++.+|..|.||||+|+..++.+++++|+++|++++++
T Consensus       156 ~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~  219 (253)
T 1yyh_A          156 LGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT  219 (253)
T ss_dssp             TSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccc
Confidence            9999999999999999999999999 999999999999999999999999999999999998863

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=4.5e-41  Score=246.43  Aligned_cols=192  Identities=19%  Similarity=0.185  Sum_probs=136.2

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhC
Q 026423           28 MDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVG  107 (238)
Q Consensus        28 ~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~  107 (238)
                      +.+|||+|+..|+.+++++|+++|.++ +..+..|.||||+|+..|+.+++++|+ ..+.+++.++..|.||||+|+..+
T Consensus        40 g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~  117 (231)
T 3aji_A           40 SRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKN  117 (231)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHHHcCHHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcC
Confidence            444677777777777777777777776 666677777777777777777777777 355566666777777777777777


Q ss_pred             CHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCc
Q 026423          108 DPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSL  187 (238)
Q Consensus       108 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  187 (238)
                      +.+++++|+++++++.            ..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+
T Consensus       118 ~~~~~~~Ll~~g~~~~------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~  184 (231)
T 3aji_A          118 RHEIAVMLLEGGANPD------------AKDHYDATAMHRAAAKGNLKMVHILLFYKAST-NIQDTEGNTPLHLACDEER  184 (231)
T ss_dssp             CHHHHHHHHHTTCCTT------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTC
T ss_pred             CHHHHHHHHHcCCCCC------------CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc-cccCCCCCCHHHHHHHCCC
Confidence            7777777777665533            45566777777777777777777777777766 5666777777777777777


Q ss_pred             HHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhccccc
Q 026423          188 TDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCL  235 (238)
Q Consensus       188 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~  235 (238)
                      .+++++|+++| ++++.+|..|.||+++|+..++.+++++|.++|+++
T Consensus       185 ~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~i  231 (231)
T 3aji_A          185 VEEAKFLVTQG-ASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEASM  231 (231)
T ss_dssp             HHHHHHHHHTT-CCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHCC-CCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccccC
Confidence            77777777776 777777777777777777777777777777777654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=3e-40  Score=242.07  Aligned_cols=195  Identities=19%  Similarity=0.243  Sum_probs=182.5

Q ss_pred             CHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCC
Q 026423           29 DHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGD  108 (238)
Q Consensus        29 ~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~  108 (238)
                      .++|+.|+..|+.+.+++|++.+....+..+..|.||||+|+..|+.+++++|+ ..+.+++.++..|.||||+|+..|+
T Consensus         7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~   85 (231)
T 3aji_A            7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL-QLGVPVNDKDDAGWSPLHIAASAGX   85 (231)
T ss_dssp             SSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCSCCCCTTSCCHHHHHHHHTC
T ss_pred             cchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHH-HhCCCCCCcCCCCCCHHHHHHHcCH
Confidence            348999999999999999999887765888999999999999999999999999 4677889999999999999999999


Q ss_pred             HHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcH
Q 026423          109 PAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLT  188 (238)
Q Consensus       109 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  188 (238)
                      .+++++|+++++++.            ..+..|.||||+|+..++.+++++|++.|+++ +..+..|.||||+|+..|+.
T Consensus        86 ~~~v~~Ll~~g~~~~------------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~  152 (231)
T 3aji_A           86 DEIVKALLVKGAHVN------------AVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNL  152 (231)
T ss_dssp             HHHHHHHHHTTCCTT------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHHcCCCCC------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCH
Confidence            999999999987754            57789999999999999999999999999988 78899999999999999999


Q ss_pred             HHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCCC
Q 026423          189 DIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV  238 (238)
Q Consensus       189 ~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~~  238 (238)
                      +++++|++.| ++++.+|..|.||||+|+..++.+++++|+++|++++++
T Consensus       153 ~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~  201 (231)
T 3aji_A          153 KMVHILLFYK-ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIE  201 (231)
T ss_dssp             HHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCC
T ss_pred             HHHHHHHhcC-CCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCC
Confidence            9999999998 999999999999999999999999999999999998763

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.9e-40  Score=243.59  Aligned_cols=200  Identities=18%  Similarity=0.210  Sum_probs=178.7

Q ss_pred             CCCCHHHHHHHHcCCHHHHHHHHh----hhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHH
Q 026423           26 TTMDHELLNVLRRGDEHQISLIAG----RMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLH  101 (238)
Q Consensus        26 ~~~~~~l~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~  101 (238)
                      ..+.+|||+|+..|+.+++++|++    .|.++ +..+..|.||||+|+..|+.+++++|+ ..+.+++.++..|.||||
T Consensus         7 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~l~   84 (241)
T 1k1a_A            7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLV-TAGASPMALDRHGQTAAH   84 (241)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CcccccCCCHHHHHHHcCCHHHHHHHH-HcCCCccccCCCCCCHHH
Confidence            345568999999999999999997    67787 888999999999999999999999999 577788889999999999


Q ss_pred             HHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccC-CCCCCHHH
Q 026423          102 IAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLN-NAEQTPLS  180 (238)
Q Consensus       102 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~g~t~l~  180 (238)
                      +|+..++.+++++|++.++...        ..++..+..|.||||+|+..|+.+++++|++.|+++ +..+ ..|.||||
T Consensus        85 ~A~~~~~~~~~~~Ll~~~~~~~--------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~  155 (241)
T 1k1a_A           85 LACEHRSPTCLRALLDSAAPGT--------LDLEARNYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLI  155 (241)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTS--------CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCcc--------ccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHH
Confidence            9999999999999999986321        123467889999999999999999999999999988 5555 78999999


Q ss_pred             HHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCC
Q 026423          181 IAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  237 (238)
Q Consensus       181 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~  237 (238)
                      +|+..|+.+++++|++.| ++++.+|..|.||||+|+..++.+++++|+++|++++.
T Consensus       156 ~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  211 (241)
T 1k1a_A          156 HAVENNSLSMVQLLLQHG-ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL  211 (241)
T ss_dssp             HHHHTTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC
Confidence            999999999999999998 99999999999999999999999999999999999875

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.5e-40  Score=249.70  Aligned_cols=196  Identities=14%  Similarity=0.130  Sum_probs=180.5

Q ss_pred             CCCCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHH
Q 026423           25 PTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAA  104 (238)
Q Consensus        25 ~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~  104 (238)
                      ...+.+|||+|+..|+.+++++|++.|.++ +..+..|.||||+|+..|+.+++++|+ ..+.+++.++..|.||||+|+
T Consensus        56 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~~~~g~t~L~~A~  133 (285)
T 3d9h_A           56 AVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLHEACLGGHLSCVKILL-KHGAQVNGVTADWHTPLFNAC  133 (285)
T ss_dssp             SCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEECTTCCCHHHHHHHTTCHHHHHHHH-HTTCCSSCCCTTCCCHHHHHH
T ss_pred             CccCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHH-HCCCCCCCCCCCCCCHHHHHH
Confidence            344566899999999999999999999998 889999999999999999999999999 567888999999999999999


Q ss_pred             HhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHH
Q 026423          105 RVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAID  184 (238)
Q Consensus       105 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~  184 (238)
                      ..|+.+++++|+++++++.             .+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+.
T Consensus       134 ~~~~~~~v~~Ll~~g~~~~-------------~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~  199 (285)
T 3d9h_A          134 VSGSWDCVNLLLQHGASVQ-------------PESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACE  199 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCSS-------------CSCTTSCHHHHHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHH
T ss_pred             HcCHHHHHHHHHHCCCCCC-------------CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHH
Confidence            9999999999999987754             2345999999999999999999999999988 7889999999999999


Q ss_pred             cCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCCC
Q 026423          185 SSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV  238 (238)
Q Consensus       185 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~~  238 (238)
                      .|+.+++++|++.| ++++. +..|.||||+|+..++.+++++|+++|++++.+
T Consensus       200 ~~~~~~v~~Ll~~g-a~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~  251 (285)
T 3d9h_A          200 NQQRACVKKLLESG-ADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAK  251 (285)
T ss_dssp             TTCHHHHHHHHHTT-CCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             cCcHHHHHHHHHCC-CCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence            99999999999998 88884 889999999999999999999999999998763

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=9e-40  Score=253.37  Aligned_cols=230  Identities=18%  Similarity=0.119  Sum_probs=195.5

Q ss_pred             chhhhhhhccccCCCCCCCCCCCCCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHH
Q 026423            4 RSFEMTEFGTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILR   83 (238)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~   83 (238)
                      ++.+.+++.+.....+++..+ ..+.+|||+|+..|+.+++++|+++|.++ +..+..|.||||+|+..|+.+++++|+ 
T Consensus        35 g~~~~v~~ll~~~~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~iv~~Ll-  111 (351)
T 3utm_A           35 GNEEKLMALLTPLNVNCHASD-GRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLL-  111 (351)
T ss_dssp             TCHHHHHHHCCTTTTTCCCSS-TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHH-
T ss_pred             CCHHHHHHHHHhcCCCcccCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHCCCHHHHHHHH-
Confidence            445555554443333333332 33556899999999999999999999999 888999999999999999999999999 


Q ss_pred             cCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcc-------------------------------
Q 026423           84 RRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPES-------------------------------  132 (238)
Q Consensus        84 ~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~-------------------------------  132 (238)
                      ..+.+++..+..|.||||+|+..|+.+++++|+++|+++......+...                               
T Consensus       112 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (351)
T 3utm_A          112 KHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADL  191 (351)
T ss_dssp             HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccH
Confidence            5678889999999999999999999999999999998765443322110                               


Q ss_pred             -----------cccccCCCCCcHHHHHHHc---CCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 026423          133 -----------LLRITDDEGNTPLHNAVRN---KHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQR  198 (238)
Q Consensus       133 -----------~~~~~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  198 (238)
                                 .....+..+.||||+|+..   +..+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++.|
T Consensus       192 ~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  270 (351)
T 3utm_A          192 AKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHKHG  270 (351)
T ss_dssp             HHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence                       1112457789999999998   5589999999999998 788999999999999999999999999999


Q ss_pred             CcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCCC
Q 026423          199 PESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV  238 (238)
Q Consensus       199 ~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~~  238 (238)
                       ++++.+|..|+||||+|+..++.+++++|+++|++++++
T Consensus       271 -a~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~  309 (351)
T 3utm_A          271 -AKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSII  309 (351)
T ss_dssp             -CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred             -CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCc
Confidence             999999999999999999999999999999999998863

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.7e-40  Score=249.48  Aligned_cols=193  Identities=13%  Similarity=0.094  Sum_probs=177.3

Q ss_pred             CCCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHH
Q 026423           26 TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAAR  105 (238)
Q Consensus        26 ~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~  105 (238)
                      ..+.+|||+|+..|+.+++++|+++|+++ +..  +|.||||+|+..|+.+++++|+ ..+.+++.++..|.||||+|+.
T Consensus        29 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~--~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~d~~g~t~L~~A~~  104 (285)
T 3kea_A           29 VHGHSASYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVKILL-FSGLDDSQFDDKGNTALYYAVD  104 (285)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTGGG-SCC--TTCCHHHHHTTSSSCHHHHHHH-HTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCC--CCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCcHHHHHHH
Confidence            34556899999999999999999999998 555  5999999999999999999999 5678889999999999999999


Q ss_pred             hCCHHHHHHHHhhCccccCCCCCCCcccccccCCCC-CcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHH
Q 026423          106 VGDPAIVSTILKYAPAITNGTESEPESLLRITDDEG-NTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAID  184 (238)
Q Consensus       106 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~  184 (238)
                      .|+.+++++|+++|+++.            ..+..| .||||+|+..|+.+++++|++.|++...  ...|.||||+|+.
T Consensus       105 ~g~~~~v~~Ll~~ga~~~------------~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~  170 (285)
T 3kea_A          105 SGNMQTVKLFVKKNWRLM------------FYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIK  170 (285)
T ss_dssp             TTCHHHHHHHHHHCGGGG------------GCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--CSTHHHHHHHHHH
T ss_pred             cCCHHHHHHHHhcCCCCC------------ccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--ccCCccHHHHHHH
Confidence            999999999999998865            577788 7999999999999999999999987621  1289999999999


Q ss_pred             cCcHHHHHHHHhcCCcccccCCCCCCcH-HHHHHHhcCcchhHHhhhcccccCC
Q 026423          185 SSLTDIACFIIDQRPESLNHRLPEELTL-LHSAVMRQNYGEPMIFISLNKCLSI  237 (238)
Q Consensus       185 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~-l~~A~~~~~~~~~~~L~~~g~~~~~  237 (238)
                      .|+.+++++|+++| ++++.+|..|+|| ||+|+..++.+++++|+++|++++.
T Consensus       171 ~g~~~~v~~Ll~~g-ad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~  223 (285)
T 3kea_A          171 NGHVDMMILLLDYM-TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYS  223 (285)
T ss_dssp             TTCHHHHHHHHHHH-HHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTT
T ss_pred             cChHHHHHHHHHcC-CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            99999999999998 9999999999998 9999999999999999999999986

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=2.1e-39  Score=232.68  Aligned_cols=191  Identities=19%  Similarity=0.237  Sum_probs=174.8

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHhhhh-ccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHh
Q 026423           28 MDHELLNVLRRGDEHQISLIAGRMQ-NIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARV  106 (238)
Q Consensus        28 ~~~~l~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~  106 (238)
                      ..++|+.|+..|+.+.++.|+..+. ++ +..+..|.||||+|+..|+.+++++|+ ..+.+++.++..|.||||+|+..
T Consensus         5 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            5 EVGALLEAANQRDTKKVKEILQDTTYQV-DEVDTEGNTPLNIAVHNNDIEIAKALI-DRGADINLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             CTTHHHHHHHTTCHHHHHHHHTCTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccHHHHHHHhccHHHHHHHHHcCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHc
Confidence            3448999999999999999999887 77 888999999999999999999999999 56788899999999999999999


Q ss_pred             CCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcC
Q 026423          107 GDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSS  186 (238)
Q Consensus       107 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  186 (238)
                      |+.+++++|++.+..           .++..+..|.||||+|+..|+.+++++|++.|....+..+..|.||||+|+..+
T Consensus        83 ~~~~~~~~Ll~~~~~-----------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~  151 (201)
T 3hra_A           83 GRTEILAYMLKHATP-----------DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLR  151 (201)
T ss_dssp             TCHHHHHHHHHHSCC-----------CTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSS
T ss_pred             CCHHHHHHHHhccCc-----------ccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhc
Confidence            999999999965432           133678899999999999999999999999994444889999999999999988


Q ss_pred             c-----HHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcc
Q 026423          187 L-----TDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN  232 (238)
Q Consensus       187 ~-----~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g  232 (238)
                      .     .+++++|++.| ++++.+|..|.|||++|+..++.+++++|+++|
T Consensus       152 ~~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          152 EGNQLYQDIVKLLMENG-ADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             CCSHHHHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             cchhhHHHHHHHHHHCC-CCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            7     99999999999 999999999999999999999999999999987

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.7e-40  Score=247.12  Aligned_cols=175  Identities=21%  Similarity=0.249  Sum_probs=77.9

Q ss_pred             HHHHHHHHcCCHH-HHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCC
Q 026423           30 HELLNVLRRGDEH-QISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGD  108 (238)
Q Consensus        30 ~~l~~A~~~~~~~-~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~  108 (238)
                      +||+.|+..+..+ ++++|++.|+++ +..+.+|.||||+|+..|+.+++++|+ ..+.+++.++..|.||+++|+..++
T Consensus        54 t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll-~~~a~~~~~~~~g~t~l~~a~~~~~  131 (269)
T 4b93_B           54 HPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQDGSSPLHVAALHGRADLIPLLL-KHGANAGARNADQAVPLHLACQQGH  131 (269)
T ss_dssp             ---------------------CCCCT-TCCCTTSCCHHHHHHHTTCTTHHHHHH-HTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHH-hcCCCcCccCCCCCCccccccccCh
Confidence            3444444444332 444444445554 444455555555555555555555555 2334444444455555555555555


Q ss_pred             HHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcH
Q 026423          109 PAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLT  188 (238)
Q Consensus       109 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  188 (238)
                      .+++++|++.|+++.            .++..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.
T Consensus       132 ~~~~~~Ll~~g~~~n------------~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadv-n~~~~~g~t~Lh~A~~~g~~  198 (269)
T 4b93_B          132 FQVVKCLLDSNAKPN------------KKDLSGNTPLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEKHV  198 (269)
T ss_dssp             HHHHHHHHHTTCCSC------------CCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCH
T ss_pred             HHHHHHHHHCCCCCC------------CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC-CccccCCCcHHHHHHHcCCH
Confidence            555555555444322            34444555555555555555555555555544 44455555555555555555


Q ss_pred             HHHHHHHhcCCcccccCCCCCCcHHHHHHHhc
Q 026423          189 DIACFIIDQRPESLNHRLPEELTLLHSAVMRQ  220 (238)
Q Consensus       189 ~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~  220 (238)
                      +++++|+++| ++++.+|..|+||||+|++++
T Consensus       199 ~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~~  229 (269)
T 4b93_B          199 FVVELLLLHG-ASVQVLNKRQRTAVDCAEQNS  229 (269)
T ss_dssp             HHHHHHHHTT-CCSCCCCTTSCCSGGGSCTTC
T ss_pred             HHHHHHHHCC-CCCCCcCCCCCCHHHHHHhCC
Confidence            5555555554 555555555555555554443

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=1.3e-39  Score=242.33  Aligned_cols=204  Identities=16%  Similarity=0.096  Sum_probs=172.7

Q ss_pred             CCHHHHHHHHcCCHH----HHHHHHhhhhccccc----cCCCCchHHHHHHHc---CCcchHHHHHHcCcccccc-----
Q 026423           28 MDHELLNVLRRGDEH----QISLIAGRMQNIFST----MSPRGNTVLHMAIRF---RNHKVIPEILRRRDSLLRK-----   91 (238)
Q Consensus        28 ~~~~l~~A~~~~~~~----~v~~Ll~~~~~~~~~----~~~~g~t~L~~a~~~---~~~~~~~~Ll~~~~~~~~~-----   91 (238)
                      +.++||.|+..|+.+    ++++|++.|.++ +.    .+..|.||||+|+..   |+.+++++|++ .+.+.+.     
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i-~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~-~g~~~~~~~~~~   79 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYL-TDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQ-IDKDSGNPKPLV   79 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHH-HHHHTTCSSCGG
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCHHHHHHHccccchHHHHHHHHh-cCCcccchhhhc
Confidence            457999999999997    667777899998 66    799999999999999   99999999995 4444332     


Q ss_pred             ------CCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCC-cccccccCCCCCcHHHHHHHcCCHHHHHHHHH--
Q 026423           92 ------NNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP-ESLLRITDDEGNTPLHNAVRNKHENVVRMLVK--  162 (238)
Q Consensus        92 ------~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~--  162 (238)
                            ++..|.||||+|+..|+.+++++|+++|+++........ ....+..+..|.||||+|+..|+.+++++|++  
T Consensus        80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~  159 (256)
T 2etb_A           80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP  159 (256)
T ss_dssp             GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence                  346799999999999999999999999988653221100 00011122349999999999999999999999  


Q ss_pred             -cCCccccccCCCCCCHHHHHHH--cCcHH-------HHHHHHhcCCccc-------ccCCCCCCcHHHHHHHhcCcchh
Q 026423          163 -KDRIPLGYLNNAEQTPLSIAID--SSLTD-------IACFIIDQRPESL-------NHRLPEELTLLHSAVMRQNYGEP  225 (238)
Q Consensus       163 -~~~~~~~~~~~~g~t~l~~a~~--~~~~~-------~~~~Ll~~~~~~~-------~~~~~~g~t~l~~A~~~~~~~~~  225 (238)
                       .|+++ +..|..|+||||+|+.  .++.+       ++++|++.| +++       +.+|..|+||||+|+..|+.+++
T Consensus       160 ~~ga~~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~g-a~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v  237 (256)
T 2etb_A          160 HQPASL-EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMG-ARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIF  237 (256)
T ss_dssp             SCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ccCCCc-CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcC-CCcccccccccccCCCCCCHHHHHHHhCCHHHH
Confidence             89988 7899999999999998  78888       999999999 999       89999999999999999999999


Q ss_pred             HHhhhccccc
Q 026423          226 MIFISLNKCL  235 (238)
Q Consensus       226 ~~L~~~g~~~  235 (238)
                      ++|+++|++.
T Consensus       238 ~~Ll~~g~~~  247 (256)
T 2etb_A          238 RHILQREFSG  247 (256)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHhCCCCC
Confidence            9999999764

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-40  Score=249.14  Aligned_cols=193  Identities=18%  Similarity=0.240  Sum_probs=147.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhhhcc-------ccccCCCCchHHHHHHHcCCcc-hHHHHHHcCccccccCCCCCCcHHH
Q 026423           30 HELLNVLRRGDEHQISLIAGRMQNI-------FSTMSPRGNTVLHMAIRFRNHK-VIPEILRRRDSLLRKNNWKGETPLH  101 (238)
Q Consensus        30 ~~l~~A~~~~~~~~v~~Ll~~~~~~-------~~~~~~~g~t~L~~a~~~~~~~-~~~~Ll~~~~~~~~~~~~~g~~~l~  101 (238)
                      +.+.-+... +.++|++|++.|.+.       .+..+..|.|||++|+..+..+ +++.|+ ..+.+++.++..|+||||
T Consensus        14 ~L~~A~~~G-~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll-~~Gadvn~~d~~G~TpLh   91 (269)
T 4b93_B           14 KLLRAVADG-DLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVP-ASGLGVNVTSQDGSSPLH   91 (269)
T ss_dssp             HHHHHHHTT-CHHHHHHHHTCC-----------------------------------------CCCCTTCCCTTSCCHHH
T ss_pred             HHHHHHHcC-CHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHH-HCCCCCCCcCCCCCCHHH
Confidence            345555555 589999999988753       2556778999999999877764 677777 678889999999999999


Q ss_pred             HHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHH
Q 026423          102 IAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI  181 (238)
Q Consensus       102 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~  181 (238)
                      +|+..|+.+++++|++.++++.            ..+..|.||+++|+..++.+++++|++.|+++ +..|..|.||||+
T Consensus        92 ~A~~~g~~~~v~~Ll~~~a~~~------------~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~  158 (269)
T 4b93_B           92 VAALHGRADLIPLLLKHGANAG------------ARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIY  158 (269)
T ss_dssp             HHHHTTCTTHHHHHHHTTCCTT------------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHH
T ss_pred             HHHHcCcHHHHHHHHhcCCCcC------------ccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHH
Confidence            9999999999999999997754            57788999999999999999999999999988 7889999999999


Q ss_pred             HHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCCC
Q 026423          182 AIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV  238 (238)
Q Consensus       182 a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~~  238 (238)
                      |+..|+.+++++|++.| ++++.++..|+||||+|+..|+.+++++|+++|++++++
T Consensus       159 A~~~g~~~~v~~Ll~~g-advn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~  214 (269)
T 4b93_B          159 ACSGGHHELVALLLQHG-ASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVL  214 (269)
T ss_dssp             HHHTTCGGGHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCC
T ss_pred             HHHCCCHHHHHHHHHCC-CCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence            99999999999999999 999999999999999999999999999999999999863

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=3.4e-39  Score=252.20  Aligned_cols=214  Identities=15%  Similarity=0.161  Sum_probs=186.5

Q ss_pred             hhhccccCCCCCCCCCCCCCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCc--
Q 026423            9 TEFGTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRD--   86 (238)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~--   86 (238)
                      ++.|++++..+..+      .||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++...  
T Consensus       153 l~~ga~vn~~d~~g------~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~  225 (373)
T 2fo1_E          153 IAAGADVNAMDCDE------NTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLK  225 (373)
T ss_dssp             HHTCCCTTCCCTTS------CCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHH
T ss_pred             HhcCCCCcCCCCCC------CCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccc
Confidence            35677776665443      44999999999999999999999999 8889999999999999999999999995432  


Q ss_pred             cccccCCCCCCcHHHHHHHhC---CHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 026423           87 SLLRKNNWKGETPLHIAARVG---DPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK  163 (238)
Q Consensus        87 ~~~~~~~~~g~~~l~~a~~~~---~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~  163 (238)
                      .+++..+..|.||||+|+..+   +.+++++|+++|+++....    ....+..+..|.||||+|+..|+.+++++|++.
T Consensus       226 ~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~----~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~  301 (373)
T 2fo1_E          226 GDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDG----AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE  301 (373)
T ss_dssp             HTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCS----GGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHH
T ss_pred             cChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCccccc----ccccCcccccCCCHHHHHHHhCCHHHHHHHHHh
Confidence            688889999999999999998   8999999999998765311    111234677899999999999999999999988


Q ss_pred             C-CccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhccccc
Q 026423          164 D-RIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCL  235 (238)
Q Consensus       164 ~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~  235 (238)
                      + +++ +..+..|.||||+|+..|+.+++++|+++| ++++.+|..|.|||++|+.+|+.+++++|+++|++.
T Consensus       302 ~~~~~-n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g-ad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          302 KGSNK-DKQDEDGKTPIMLAAQEGRIEVVMYLIQQG-ASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             SCCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred             cCCCc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence            7 555 889999999999999999999999999998 999999999999999999999999999999999874

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=8.4e-41  Score=245.83  Aligned_cols=201  Identities=17%  Similarity=0.152  Sum_probs=179.5

Q ss_pred             CCCCHHHHHHHHcCCHHHHHHHHhhhh----ccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHH
Q 026423           26 TTMDHELLNVLRRGDEHQISLIAGRMQ----NIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLH  101 (238)
Q Consensus        26 ~~~~~~l~~A~~~~~~~~v~~Ll~~~~----~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~  101 (238)
                      ..+.+|||+|+..|+.+++++|++.+.    ++ +..+..|.||||+|+..|+.+++++|+ ..+.+++.++..|.||||
T Consensus         6 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~   83 (236)
T 1ikn_D            6 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEALL-GAGCDPELRDFRGNTPLH   83 (236)
T ss_dssp             -CCCCTTHHHHHTTCSSSSSCCCC-----CCCC-CCCCTTCCCHHHHHHHTTCHHHHHCCC-SCCCCSCCCCTTCCCHHH
T ss_pred             CCCCchhHHHHHcCChhHHHHHHHHhhccHHHh-hccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHH
Confidence            345568999999999999999999876    46 888999999999999999999999999 678889999999999999


Q ss_pred             HHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCC-CCCCHHH
Q 026423          102 IAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNN-AEQTPLS  180 (238)
Q Consensus       102 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~g~t~l~  180 (238)
                      +|+..|+.+++++|++.++....      ...++..+..|.||||+|+..|+.+++++|++.|+++ +..+. .|.||||
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~~~~------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~  156 (236)
T 1ikn_D           84 LACEQGCLASVGVLTQSCTTPHL------HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV-NAQEPCNGRTALH  156 (236)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSS------SCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHH
T ss_pred             HHHHcCCHHHHHHHHhcccchhH------HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCCHHH
Confidence            99999999999999999865321      1234567889999999999999999999999999998 66776 9999999


Q ss_pred             HHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccC
Q 026423          181 IAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLS  236 (238)
Q Consensus       181 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~  236 (238)
                      +|+..|+.+++++|+++| ++++.+|..|.|||++|+.+++.+++++|+++|++..
T Consensus       157 ~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  211 (236)
T 1ikn_D          157 LAVDLQNPDLVSLLLKCG-ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL  211 (236)
T ss_dssp             HHHHTTCHHHHHHHHTTT-CCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred             HHHHcCCHHHHHHHHHcC-CCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence            999999999999999998 9999999999999999999999999999999999754

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=9.8e-39  Score=254.71  Aligned_cols=203  Identities=20%  Similarity=0.297  Sum_probs=138.3

Q ss_pred             HHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHH
Q 026423           31 ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPA  110 (238)
Q Consensus        31 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~  110 (238)
                      |||.|+..|+.+++++|+++|.++ +..+..|.||||+|+..++.+++++|+ ..+..++..+..|.||||+|+..++.+
T Consensus       149 ~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~  226 (437)
T 1n11_A          149 PLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLL-PRGGSPHSPAWNGYTPLHIAAKQNQVE  226 (437)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSCCCHHHHHHHTTCHHHHHHHG-GGTCCSCCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHH-hCCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence            455555555555555555555554 444445555555555555555555555 233334444444455555555555555


Q ss_pred             HHHHHHhhCccccCCCCCCC---------------------cccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCcccc
Q 026423          111 IVSTILKYAPAITNGTESEP---------------------ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG  169 (238)
Q Consensus       111 ~~~~ll~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~  169 (238)
                      ++++|+++++++......+.                     ...++..+..|.||||+|++.|+.+++++|+++|+++ +
T Consensus       227 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~  305 (437)
T 1n11_A          227 VARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-D  305 (437)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-T
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccC-C
Confidence            55555544443322221110                     1123457788899999999999999999999998887 7


Q ss_pred             ccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCC
Q 026423          170 YLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  237 (238)
Q Consensus       170 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~  237 (238)
                      ..+..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus       306 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~  372 (437)
T 1n11_A          306 ATTRMGYTPLHVASHYGNIKLVKFLLQHQ-ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE  372 (437)
T ss_dssp             CCCSSCCCHHHHHHHSSCSHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred             CCCCCCCCHHHHHHHcCcHHHHHHHHhcC-CCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCC
Confidence            78889999999999999999999999988 89999999999999999999999999999999998875

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=8.5e-39  Score=235.22  Aligned_cols=206  Identities=16%  Similarity=0.178  Sum_probs=183.7

Q ss_pred             chhhhhhhc----cccCCCCCCCCCCCCCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHH
Q 026423            4 RSFEMTEFG----TDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIP   79 (238)
Q Consensus         4 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~   79 (238)
                      ++.+++++.    ++++..+      ..+.+|||+|+..|+.+++++|+++|.++ +..+..|.||||+|+..|+.++++
T Consensus        22 g~~~~v~~Ll~~g~~~~~~~------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~   94 (237)
T 3b7b_A           22 GHVDICHMLVQAGANIDTCS------EDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHLAAKKGHYEVVQ   94 (237)
T ss_dssp             TCHHHHHHHHHTTCCTTCCC------TTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CcHHHHHHHHHcCCCcCccC------CCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHH
Confidence            445666554    4444333      23445899999999999999999999998 888999999999999999999999


Q ss_pred             HHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHH
Q 026423           80 EILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRM  159 (238)
Q Consensus        80 ~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~  159 (238)
                      +|++.++.+++..+..|.||||+|+..++.+++++|+++|+++.            ..+..|.||||+|+..|+.+++++
T Consensus        95 ~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~------------~~~~~g~t~L~~A~~~~~~~~~~~  162 (237)
T 3b7b_A           95 YLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN------------IRDNEENICLHWAAFSGCVDIAEI  162 (237)
T ss_dssp             HHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------------CCCTTSCCHHHHHHHHCCHHHHHH
T ss_pred             HHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC------------ccCCCCCCHHHHHHHCCCHHHHHH
Confidence            99976668889999999999999999999999999999997754            578899999999999999999999


Q ss_pred             HHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhh
Q 026423          160 LVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFIS  230 (238)
Q Consensus       160 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  230 (238)
                      |++.|+++ +..+..|.||||+|++.|+.+++++|+++| ++++.+|..|.||+++|+..++.+.+..|++
T Consensus       163 Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          163 LLAAKCDL-HAVNIHGDSPLHIAARENRYDCVVLFLSRD-SDVTLKNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             HHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             HHHcCCCC-CCcCCCCCCHHHHHHHhCCHhHHHHHHHcC-CCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999988 788999999999999999999999999999 9999999999999999999999877766654

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.4e-38  Score=245.67  Aligned_cols=225  Identities=16%  Similarity=0.155  Sum_probs=160.4

Q ss_pred             chhhhhhhccccCCCCCCCCCCCCCCHHHHHHHHcCCHHHHHHHHhhhhccc----------------------------
Q 026423            4 RSFEMTEFGTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIF----------------------------   55 (238)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~----------------------------   55 (238)
                      ++.+++++.++.. .+++..+...+.||||+|+..|+.++|++|+++|+++.                            
T Consensus        36 g~~~~V~~LL~~G-advn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (337)
T 4g8k_A           36 EDVDLVQQLLEGG-ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSK  114 (337)
T ss_dssp             TCHHHHHHHHHHT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             CCHHHHHHHHHCC-CCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhc
Confidence            4455555543321 12222233345568999999999999999998877541                            


Q ss_pred             ----cccCCCCchHHHHHHHcCCcchHHHHHHcCccccc----------cCCCCCCcHHHHHHHhCCHHHHHHHHhh-Cc
Q 026423           56 ----STMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLR----------KNNWKGETPLHIAARVGDPAIVSTILKY-AP  120 (238)
Q Consensus        56 ----~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~----------~~~~~g~~~l~~a~~~~~~~~~~~ll~~-~~  120 (238)
                          +..+..|.||||+|+..|+.+++++|++ .+.+++          ..+..|.||||+|+..|+.+++++|+++ |+
T Consensus       115 ~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~-~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~ga  193 (337)
T 4g8k_A          115 GADVNECDFYGFTAFMEAAVYGKVKALKFLYK-RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA  193 (337)
T ss_dssp             TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCC
T ss_pred             cchhhhhccCCCCHHHHHHHcCcHHHHHHHHH-cCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCC
Confidence                3456678889999999999999998885 443333          3445688999999999999999999964 66


Q ss_pred             cccCCCCCCC-------------------------cccccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCccccccCCC
Q 026423          121 AITNGTESEP-------------------------ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK-DRIPLGYLNNA  174 (238)
Q Consensus       121 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~  174 (238)
                      ++......+.                         ...++.++..|.||||+|+..|+.+++++|+.. |+++ +..|..
T Consensus       194 d~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~v-n~~d~~  272 (337)
T 4g8k_A          194 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI-NDTDSD  272 (337)
T ss_dssp             CTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCT-TCBCTT
T ss_pred             CcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcc-cCcCCC
Confidence            6654333221                         223456677788888888888888888888875 4444 777888


Q ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCC
Q 026423          175 EQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  237 (238)
Q Consensus       175 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~  237 (238)
                      |+||||+|++.|+.+++++|+++| ++++.     .+||++|+..++.+++++|+++||++|+
T Consensus       273 G~TpL~~A~~~g~~~iv~~Ll~~G-Ad~n~-----~~~L~~A~~~~~~~iv~~Ll~~GA~~d~  329 (337)
T 4g8k_A          273 GKTALLLAVELKLKKIAELLCKRG-ASTDC-----GDLVMTARRNYDHSLVKVLLSHGAKEDF  329 (337)
T ss_dssp             SCBHHHHHHHTTCHHHHHHHHTTS-CSSTT-----CCHHHHHHHTTCHHHHHHHHHTTCCC--
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCC-CCCCC-----CCHHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence            888888888888888888888887 76654     3588888888888888888888888774

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.6e-39  Score=252.25  Aligned_cols=191  Identities=16%  Similarity=0.167  Sum_probs=162.8

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcC---cccccc-------------
Q 026423           28 MDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR---DSLLRK-------------   91 (238)
Q Consensus        28 ~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~---~~~~~~-------------   91 (238)
                      +.+|||+|+..|+.+++++|+++|.++ +  +..|.||||+|+..|+.+++++|++..   +..++.             
T Consensus        53 g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~--~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~  129 (364)
T 3ljn_A           53 GCTALHLACKFGCVDTAKYLASVGEVH-S--LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEI  129 (364)
T ss_dssp             CCCHHHHHHHHCCHHHHHHHHHHCCCC-C--CBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEE
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCc-c--ccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhh
Confidence            344788888888888888888888865 2  346888888888888888888888541   333343             


Q ss_pred             ----CCCCCCcHHHHHHHhC--CHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 026423           92 ----NNWKGETPLHIAARVG--DPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDR  165 (238)
Q Consensus        92 ----~~~~g~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~  165 (238)
                          .+..|.||||+|+..|  +.+++++|+++|+++.            ..+..|.||||+|+..|+.+++++|++.|+
T Consensus       130 ~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~------------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~  197 (364)
T 3ljn_A          130 GSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT------------AKDKADETPLMRAMEFRNREALDLMMDTVP  197 (364)
T ss_dssp             TTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTT------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHCS
T ss_pred             ccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCc------------ccCCCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence                6778899999999999  8999999999887754            578889999999999999999999999988


Q ss_pred             c-----cccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhccccc
Q 026423          166 I-----PLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCL  235 (238)
Q Consensus       166 ~-----~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~  235 (238)
                      +     + +..+..|.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus       198 ~~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  270 (364)
T 3ljn_A          198 SKSSLRL-DYANKQGNSHLHWAILINWEDVAMRFVEMG-IDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVF  270 (364)
T ss_dssp             CSSSCCT-TCCCTTCCCTTHHHHTTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHH
T ss_pred             ccccccc-cccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCch
Confidence            8     5 788899999999999999999999999998 999999999999999999999999999999998775

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=8.1e-39  Score=222.59  Aligned_cols=153  Identities=23%  Similarity=0.410  Sum_probs=78.6

Q ss_pred             HHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHH
Q 026423           31 ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPA  110 (238)
Q Consensus        31 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~  110 (238)
                      .|+.||+.|+.++|+.|+++|+++ +..+..|.||||+|+..++.+++++|+ ..+.+++.++..|+||||+|+..|+.+
T Consensus         7 ~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll-~~gad~~~~d~~g~TpLh~A~~~g~~~   84 (169)
T 4gpm_A            7 RLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSDGRTPLHHAAENGHKE   84 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHH-hcccchhhhccCCCCHHHHHHHcCCHH
Confidence            455555555555555555555555 555555555555555555555555555 344444555555555555555555555


Q ss_pred             HHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHH
Q 026423          111 IVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDI  190 (238)
Q Consensus       111 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  190 (238)
                      ++++|+++|+++.            .++..|+||||+|++.|+.+++++|++.|+++ +..|..|+|||++|++.|+.++
T Consensus        85 ~v~~Ll~~gadvn------------~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~g~~~i  151 (169)
T 4gpm_A           85 VVKLLISKGADVN------------AKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTPLDLAREHGNEEV  151 (169)
T ss_dssp             HHHHHHHTTCCTT------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHCcCCCC------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHH
Confidence            5555555544422            34444444444444444444444444444444 3444444444444444444444


Q ss_pred             HHHHHhcC
Q 026423          191 ACFIIDQR  198 (238)
Q Consensus       191 ~~~Ll~~~  198 (238)
                      +++|+++|
T Consensus       152 v~~Ll~~G  159 (169)
T 4gpm_A          152 VKLLEKQG  159 (169)
T ss_dssp             HHHHHTC-
T ss_pred             HHHHHHCC
Confidence            44444444

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=3e-39  Score=245.45  Aligned_cols=197  Identities=20%  Similarity=0.205  Sum_probs=175.9

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHh
Q 026423           27 TMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARV  106 (238)
Q Consensus        27 ~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~  106 (238)
                      .+.++|+.|+..|+.+++++|+++|.++ +..+..|.||||+|+..|+.+++++|+ ..+.+++.++..|.||||+|+..
T Consensus        39 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~~~~g~tpL~~A~~~  116 (299)
T 1s70_B           39 DDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLV-ENGANINQPDNEGWIPLHAAASC  116 (299)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHHc
Confidence            4567899999999999999999999999 888999999999999999999999999 57788899999999999999999


Q ss_pred             CCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCc-------------------
Q 026423          107 GDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK-DRI-------------------  166 (238)
Q Consensus       107 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~-------------------  166 (238)
                      |+.+++++|+++|+++.            ..+..|.||||+|+..++.+++++++.. +.+                   
T Consensus       117 g~~~~v~~Ll~~g~~~~------------~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~  184 (299)
T 1s70_B          117 GYLDIAEYLISQGAHVG------------AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQW  184 (299)
T ss_dssp             TCHHHHHHHHHTTCCTT------------CCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhCCCCCC------------CcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHH
Confidence            99999999999997754            5778899999999999988888877653 222                   


Q ss_pred             ------cccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCCC
Q 026423          167 ------PLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV  238 (238)
Q Consensus       167 ------~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~~  238 (238)
                            .....+..|.||||+|+..|+.+++++|++.| ++++.+|..|.||||+|+..|+.+++++|+++|++++++
T Consensus       185 l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~  261 (299)
T 1s70_B          185 LNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV  261 (299)
T ss_dssp             HHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             HhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCc
Confidence                  22234578999999999999999999999998 999999999999999999999999999999999998763

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=4.2e-39  Score=237.35  Aligned_cols=192  Identities=18%  Similarity=0.154  Sum_probs=173.2

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCc---cccccCCCCCCcHHHHH
Q 026423           27 TMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRD---SLLRKNNWKGETPLHIA  103 (238)
Q Consensus        27 ~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~---~~~~~~~~~g~~~l~~a  103 (238)
                      .+.+|||+|+..|+.+++++|+++|.++ +..+..|.||||+|+..++.+++++|++...   .+++..+..|.||||+|
T Consensus        45 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A  123 (241)
T 1k1a_A           45 LRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA  123 (241)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHH
T ss_pred             cCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHH
Confidence            3455899999999999999999999999 8889999999999999999999999996554   26788899999999999


Q ss_pred             HHhCCHHHHHHHHhhCccccCCCCCCCcccccccC-CCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHH
Q 026423          104 ARVGDPAIVSTILKYAPAITNGTESEPESLLRITD-DEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA  182 (238)
Q Consensus       104 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a  182 (238)
                      +..++.+++++|+++++++.            ..+ ..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|
T Consensus       124 ~~~~~~~~~~~Ll~~g~~~~------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A  190 (241)
T 1k1a_A          124 VNTECQETVQLLLERGADID------------AVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV-NAQMYSGSSALHSA  190 (241)
T ss_dssp             HHHTCHHHHHHHHHTTCCTT------------CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCcc------------cccccCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHH
Confidence            99999999999999997754            345 68999999999999999999999999998 78899999999999


Q ss_pred             HHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhccc
Q 026423          183 IDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNK  233 (238)
Q Consensus       183 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~  233 (238)
                      +..|+.+++++|+++| ++++.+|..|.||+++|+.+++.++++.|.+.++
T Consensus       191 ~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          191 SGRGLLPLVRTLVRSG-ADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA  240 (241)
T ss_dssp             HHHTCHHHHHHHHHTT-CCTTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred             HHcCCHHHHHHHHhcC-CCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence            9999999999999999 9999999999999999999999999999998875

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2.3e-39  Score=253.18  Aligned_cols=208  Identities=16%  Similarity=0.125  Sum_probs=183.3

Q ss_pred             CCCCCCCCCCHHHHHHHHcCCHHHHHHHH--------hhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCcccccc
Q 026423           20 MDQELPTTMDHELLNVLRRGDEHQISLIA--------GRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRK   91 (238)
Q Consensus        20 ~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll--------~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~   91 (238)
                      ++..+...+.||||+|+..|+.+++++|+        +.|+++ +..+..|.||||+|+..|+.+++++|+ ..+.+++.
T Consensus       117 ~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v-n~~d~~g~TpL~~A~~~g~~~iv~~Ll-~~ga~~~~  194 (373)
T 2fo1_E          117 VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDENTPLMLAVLARRRRLVAYLM-KAGADPTI  194 (373)
T ss_dssp             TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCSCC
T ss_pred             ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC-cCCCCCCCCHHHHHHHcChHHHHHHHH-HCCCCCcc
Confidence            33344455677999999999998888776        789999 889999999999999999999999999 56788899


Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcC---CHHHHHHHHHcCCccc
Q 026423           92 NNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK---HENVVRMLVKKDRIPL  168 (238)
Q Consensus        92 ~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~---~~~~~~~ll~~~~~~~  168 (238)
                      ++..|.||||+|+..|+.+++++|++++...         ..++..+..|.||||+|+..+   +.+++++|++.|+++.
T Consensus       195 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~---------~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~  265 (373)
T 2fo1_E          195 YNKSERSALHQAAANRDFGMMVYMLNSTKLK---------GDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVD  265 (373)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHH---------HTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSS
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHhcCccc---------cChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcc
Confidence            9999999999999999999999999977210         113367889999999999988   8999999999998873


Q ss_pred             c-------ccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCCC
Q 026423          169 G-------YLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV  238 (238)
Q Consensus       169 ~-------~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~~  238 (238)
                      .       ..+..|.||||+|+..|+.+++++|++.++++++.+|..|.||||+|+..|+.+++++|+++|++++.+
T Consensus       266 ~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~  342 (373)
T 2fo1_E          266 YDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV  342 (373)
T ss_dssp             CCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCC
T ss_pred             cccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCC
Confidence            2       256789999999999999999999999887999999999999999999999999999999999998753

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=8.7e-39  Score=249.33  Aligned_cols=206  Identities=17%  Similarity=0.233  Sum_probs=179.5

Q ss_pred             CCCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHH
Q 026423           26 TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAAR  105 (238)
Q Consensus        26 ~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~  105 (238)
                      ..+.++||+|+..|+.++|++|+++|+++ +..+..|.||||+|+..|+.+++++|++.+. .  ..+..|.||||+|+.
T Consensus        18 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~--~~~~~g~t~L~~A~~   93 (364)
T 3ljn_A           18 DENMEKIHVAARKGQTDEVRRLIETGVSP-TIQNRFGCTALHLACKFGCVDTAKYLASVGE-V--HSLWHGQKPIHLAVM   93 (364)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC-C--CCCBTTBCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCHHHHHHHHHCCC-C--ccccCCCCHHHHHHH
Confidence            34567999999999999999999999999 8899999999999999999999999996554 3  334579999999999


Q ss_pred             hCCHHHHHHHHhh----CccccCC-----CCCCCcccccccCCCCCcHHHHHHHcC--CHHHHHHHHHcCCccccccCCC
Q 026423          106 VGDPAIVSTILKY----APAITNG-----TESEPESLLRITDDEGNTPLHNAVRNK--HENVVRMLVKKDRIPLGYLNNA  174 (238)
Q Consensus       106 ~~~~~~~~~ll~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~  174 (238)
                      .|+.+++++|++.    +..+...     .........+..+..|.||||+|+..|  +.+++++|++.|+++ +..+..
T Consensus        94 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~d~~  172 (364)
T 3ljn_A           94 ANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKA  172 (364)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCCCTT
T ss_pred             cCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-cccCCC
Confidence            9999999999998    5443210     000001123347778999999999999  999999999999998 788999


Q ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCcc-----cccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCC
Q 026423          175 EQTPLSIAIDSSLTDIACFIIDQRPES-----LNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  237 (238)
Q Consensus       175 g~t~l~~a~~~~~~~~~~~Ll~~~~~~-----~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~  237 (238)
                      |.||||+|+..|+.+++++|++.| ++     ++..|..|+||||+|+..|+.+++++|+++|++++.
T Consensus       173 g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~  239 (364)
T 3ljn_A          173 DETPLMRAMEFRNREALDLMMDTV-PSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNM  239 (364)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHC-SCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcc-cccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            999999999999999999999998 77     999999999999999999999999999999999986

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.8e-38  Score=239.53  Aligned_cols=212  Identities=14%  Similarity=0.155  Sum_probs=177.9

Q ss_pred             chhhhhhhccccCCCCCCCCCCCCCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHH
Q 026423            4 RSFEMTEFGTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILR   83 (238)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~   83 (238)
                      ++.+++++.++.. .+++.. ...+.+|||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++
T Consensus        70 g~~~~v~~Ll~~g-~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  146 (285)
T 3d9h_A           70 GHQLSLRNLISQG-WAVNII-TADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQ  146 (285)
T ss_dssp             TCHHHHHHHHHTT-CCSCEE-CTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHCC-CCCCCc-CCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHH
Confidence            4556666544432 112222 223455899999999999999999999999 8889999999999999999999999995


Q ss_pred             cCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 026423           84 RRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK  163 (238)
Q Consensus        84 ~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~  163 (238)
                       .+.+++..+ .|.||||+|+..|+.+++++|+++++++.            ..+..|.||||+|+..|+.+++++|++.
T Consensus       147 -~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------------~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  212 (285)
T 3d9h_A          147 -HGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNID------------HKISHLGTPLYLACENQQRACVKKLLES  212 (285)
T ss_dssp             -TTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTT------------CCBTTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred             -CCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCC------------CcCCCCCCHHHHHHHcCcHHHHHHHHHC
Confidence             555555544 59999999999999999999999997754            5788999999999999999999999999


Q ss_pred             CCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhc-ccccCC
Q 026423          164 DRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISL-NKCLSI  237 (238)
Q Consensus       164 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~-g~~~~~  237 (238)
                      |+++ + .+..|.||||+|+..|+.+++++|+++| ++++.+|..|+|||++|+  ++.+++++|+++ |+++..
T Consensus       213 ga~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~~  282 (285)
T 3d9h_A          213 GADV-N-QGKGQDSPLHAVVRTASEELACLLMDFG-ADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASLPK  282 (285)
T ss_dssp             TCCT-T-CCBTTBCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC------
T ss_pred             CCCC-C-CCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCCC
Confidence            9988 4 4889999999999999999999999998 999999999999999999  567999999999 887753

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.3e-37  Score=240.34  Aligned_cols=206  Identities=17%  Similarity=0.186  Sum_probs=168.3

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHhhhhccccccC-CCCchHHHHHHHcCCcchHHHHHHcCc--------------------
Q 026423           28 MDHELLNVLRRGDEHQISLIAGRMQNIFSTMS-PRGNTVLHMAIRFRNHKVIPEILRRRD--------------------   86 (238)
Q Consensus        28 ~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~a~~~~~~~~~~~Ll~~~~--------------------   86 (238)
                      +.++|+.|++.|++++|++|+++|+++ +..+ ..|.||||+|+..|+.+++++|++.+.                    
T Consensus        25 ~~t~L~~Av~~g~~~~V~~LL~~Gadv-n~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  103 (337)
T 4g8k_A           25 DNHLLIKAVQNEDVDLVQQLLEGGANV-NFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAG  103 (337)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcc
Confidence            467899999999999999999999999 6655 459999999999999999999996332                    


Q ss_pred             ------------cccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCH
Q 026423           87 ------------SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE  154 (238)
Q Consensus        87 ------------~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~  154 (238)
                                  .+++..+..|.||+|+|+..|+.+++++++++|+++......  .......+..|.||||+|++.|+.
T Consensus       104 ~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~--~~~~~~~~~~g~T~L~~A~~~g~~  181 (337)
T 4g8k_A          104 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT--KEDQERLRKGGATALMDAAEKGHV  181 (337)
T ss_dssp             CHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCC--C-----CTTCSCCHHHHHHHHTCH
T ss_pred             cchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcc--ccccccccCCCCcHHHHHHHCCCH
Confidence                        234567788999999999999999999999999876533221  122234455677777777777777


Q ss_pred             HHHHHHHH--------------------------------------cCCccccccCCCCCCHHHHHHHcCcHHHHHHHHh
Q 026423          155 NVVRMLVK--------------------------------------KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID  196 (238)
Q Consensus       155 ~~~~~ll~--------------------------------------~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  196 (238)
                      +++++|++                                      +|+++ +.++..|.||||+|+..|+.+++++|++
T Consensus       182 ~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~-n~~d~~g~t~L~~a~~~~~~~~v~~Ll~  260 (337)
T 4g8k_A          182 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLE  260 (337)
T ss_dssp             HHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence            76666664                                      33333 4556678999999999999999999999


Q ss_pred             cCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCC
Q 026423          197 QRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  237 (238)
Q Consensus       197 ~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~  237 (238)
                      .++++++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus       261 ~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~  301 (337)
T 4g8k_A          261 QEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC  301 (337)
T ss_dssp             STTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTT
T ss_pred             hcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            86699999999999999999999999999999999999985

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=6.2e-38  Score=218.13  Aligned_cols=158  Identities=23%  Similarity=0.320  Sum_probs=146.4

Q ss_pred             hHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCc
Q 026423           64 TVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNT  143 (238)
Q Consensus        64 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (238)
                      ++|+.||+.|+.++|++|+ ..+.+++.++..|.||||+|+..++.+++++|++.|+++.            .++..|.|
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll-~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~------------~~d~~g~T   72 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLI-ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN------------AKDSDGRT   72 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------------CCCTTSCC
T ss_pred             HHHHHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchh------------hhccCCCC
Confidence            4799999999999999999 5778899999999999999999999999999999998754            67889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcc
Q 026423          144 PLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYG  223 (238)
Q Consensus       144 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~  223 (238)
                      |||+|+..|+.+++++|++.|+++ +..|..|+||||+|+..|+.+++++|++.| ++++.+|..|+|||++|+.+|+.+
T Consensus        73 pLh~A~~~g~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~g~~~  150 (169)
T 4gpm_A           73 PLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKG-ADVNTSDSDGRTPLDLAREHGNEE  150 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHH
Confidence            999999999999999999999998 789999999999999999999999999999 999999999999999999999999


Q ss_pred             hhHHhhhcccccC
Q 026423          224 EPMIFISLNKCLS  236 (238)
Q Consensus       224 ~~~~L~~~g~~~~  236 (238)
                      ++++|+++||+++
T Consensus       151 iv~~Ll~~GA~ie  163 (169)
T 4gpm_A          151 VVKLLEKQGGWLE  163 (169)
T ss_dssp             HHHHHHTC-----
T ss_pred             HHHHHHHCCCCcC
Confidence            9999999999986

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=8.1e-38  Score=230.15  Aligned_cols=216  Identities=15%  Similarity=0.107  Sum_probs=180.0

Q ss_pred             chhhhhhhccccCCCCCCCCCCCCCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHH
Q 026423            4 RSFEMTEFGTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILR   83 (238)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~   83 (238)
                      ++++++++.++.. .+++..+ ..+.+|||.|+..|+.+++++|++.|.++....+..|.||||+|+..|+.+++++|+ 
T Consensus        20 g~~~~~~~Ll~~g-~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll-   96 (240)
T 3eu9_A           20 GIYERCRELVEAG-YDVRQPD-KENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLM-   96 (240)
T ss_dssp             TCHHHHHHHHHTT-CCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHH-
T ss_pred             CChHHHHHHHHcC-CCcCCCC-CCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHH-
Confidence            4556666544432 1122222 234558999999999999999999999885555666999999999999999999999 


Q ss_pred             cCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCC-HHHHHHHHH
Q 026423           84 RRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH-ENVVRMLVK  162 (238)
Q Consensus        84 ~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~-~~~~~~ll~  162 (238)
                      ..+.+++.++..|.||||+|+..++.+++++|+++++++.            ..+..|.||||+|+..++ .+++++|++
T Consensus        97 ~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~------------~~~~~g~t~l~~a~~~~~~~~~~~~L~~  164 (240)
T 3eu9_A           97 KYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD------------MMDQNGMTPLMWAAYRTHSVDPTRLLLT  164 (240)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------------CCCTTSCCHHHHHHHHCCSSTTHHHHHH
T ss_pred             HcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcc------------ccCCCCCcHHHHHHHhCChHHHHHHHHh
Confidence            5677788889999999999999999999999999987654            577899999999996666 889999999


Q ss_pred             cCCccccccCC-CCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccC
Q 026423          163 KDRIPLGYLNN-AEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLS  236 (238)
Q Consensus       163 ~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~  236 (238)
                      .|+++ +..+. .|.||||+|+..|+.+++++|+++| ++++.++..|.||+++|+..++.+++++|+++|++..
T Consensus       165 ~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~  237 (240)
T 3eu9_A          165 FNVSV-NLGDKYHKNTALHWAVLAGNTTVISLLLEAG-ANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG  237 (240)
T ss_dssp             TTCCT-TCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred             cCCCc-chhhccCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence            99988 55555 8999999999999999999999999 9999999999999999999999999999999998754

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.8e-37  Score=247.41  Aligned_cols=206  Identities=22%  Similarity=0.263  Sum_probs=136.7

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhC
Q 026423           28 MDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVG  107 (238)
Q Consensus        28 ~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~  107 (238)
                      +.+|||+|+..|+.+++++|+++|.++ +..+..|.||||+|+..|+.+++++|++ .+.+++..+..|.||||+|+..|
T Consensus        47 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~t~L~~A~~~g  124 (437)
T 1n11_A           47 VETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIGHTNMVKLLLE-NNANPNLATTAGHTPLHIAAREG  124 (437)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHcC
Confidence            344788888888888888888888887 7777788888888888888888888884 56666777777888888888888


Q ss_pred             CHHHHHHHHhhCccccCCCCCCC---------------------cccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCc
Q 026423          108 DPAIVSTILKYAPAITNGTESEP---------------------ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRI  166 (238)
Q Consensus       108 ~~~~~~~ll~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~  166 (238)
                      +.+++++|+++++........+.                     ...++..+..|.||||+|+..++.+++++|++.|++
T Consensus       125 ~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  204 (437)
T 1n11_A          125 HVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS  204 (437)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC
T ss_pred             CHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence            88888888877765443222111                     112334445556666666666666666666666555


Q ss_pred             cccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCC
Q 026423          167 PLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  237 (238)
Q Consensus       167 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~  237 (238)
                      + +..+..|.||||+|+..|+.+++++|++.| ++++..+..|.||||+|+..|+.+++++|+++|+++++
T Consensus       205 ~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~  273 (437)
T 1n11_A          205 P-HSPAWNGYTPLHIAAKQNQVEVARSLLQYG-GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL  273 (437)
T ss_dssp             S-CCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC
T ss_pred             C-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCC
Confidence            5 445555666666666666666666666665 55666666666666666666666666666666666543

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=2.6e-38  Score=237.37  Aligned_cols=207  Identities=15%  Similarity=0.143  Sum_probs=171.1

Q ss_pred             CCCCCHHHHHHHHcCCHHHHHHHHhhhh----ccc---cccCCCCchHHHHHHHc---CCcchHHHHHHcCccc------
Q 026423           25 PTTMDHELLNVLRRGDEHQISLIAGRMQ----NIF---STMSPRGNTVLHMAIRF---RNHKVIPEILRRRDSL------   88 (238)
Q Consensus        25 ~~~~~~~l~~A~~~~~~~~v~~Ll~~~~----~~~---~~~~~~g~t~L~~a~~~---~~~~~~~~Ll~~~~~~------   88 (238)
                      ...+.++||.|+..|+.++|+.|++.+.    ++.   ...+..|.||||+|+..   |+.+++++|++.+...      
T Consensus        10 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~   89 (273)
T 2pnn_A           10 RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQF   89 (273)
T ss_dssp             -CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHH
T ss_pred             CcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHH
Confidence            4456779999999999999999998654    331   13478999999999986   9999999999653321      


Q ss_pred             ccc----CCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCC--cccccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 026423           89 LRK----NNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP--ESLLRITDDEGNTPLHNAVRNKHENVVRMLVK  162 (238)
Q Consensus        89 ~~~----~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~  162 (238)
                      ++.    .+..|.||||+|+..|+.+++++|+++|+++........  .......+..|.||||+|+..|+.+++++|++
T Consensus        90 i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  169 (273)
T 2pnn_A           90 VNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ  169 (273)
T ss_dssp             HTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHH
T ss_pred             hhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence            222    567899999999999999999999999988654221100  00112223479999999999999999999999


Q ss_pred             ---cCCccccccCCCCCCHHHHHHHcCc---------HHHHHHHHhcCCcccc-------cCCCCCCcHHHHHHHhcCcc
Q 026423          163 ---KDRIPLGYLNNAEQTPLSIAIDSSL---------TDIACFIIDQRPESLN-------HRLPEELTLLHSAVMRQNYG  223 (238)
Q Consensus       163 ---~~~~~~~~~~~~g~t~l~~a~~~~~---------~~~~~~Ll~~~~~~~~-------~~~~~g~t~l~~A~~~~~~~  223 (238)
                         .|+++ +..+..|+||||+|+..|+         .+++++|++.| ++++       .+|..|+||||+|+..|+.+
T Consensus       170 ~~~~gad~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~  247 (273)
T 2pnn_A          170 NSWQPADI-SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG-AKLHPTLKLEEITNRKGLTPLALAASSGKIG  247 (273)
T ss_dssp             CSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHHCTTCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred             cccCCCCc-eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhh-hhcccccccccccCCCCCCHHHHHHHhChHH
Confidence               88888 7899999999999999888         89999999999 8886       58999999999999999999


Q ss_pred             hhHHhhhccc
Q 026423          224 EPMIFISLNK  233 (238)
Q Consensus       224 ~~~~L~~~g~  233 (238)
                      ++++|+++|+
T Consensus       248 iv~~Ll~~ga  257 (273)
T 2pnn_A          248 VLAYILQREI  257 (273)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHCCC
Confidence            9999999999

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.7e-37  Score=228.46  Aligned_cols=194  Identities=19%  Similarity=0.216  Sum_probs=177.5

Q ss_pred             CHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCC
Q 026423           29 DHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGD  108 (238)
Q Consensus        29 ~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~  108 (238)
                      .++|+.|+..|+.+++++|++.|.++ +..+..|.||||+|+..|+.+++++|++.+.......+..|.||||+|+..|+
T Consensus        10 ~~~l~~A~~~g~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~   88 (240)
T 3eu9_A           10 TWDIVKATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH   88 (240)
T ss_dssp             GCCHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTC
T ss_pred             chHHHHHHHcCChHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCC
Confidence            34799999999999999999999998 88899999999999999999999999976665555566669999999999999


Q ss_pred             HHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCc-
Q 026423          109 PAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSL-  187 (238)
Q Consensus       109 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~-  187 (238)
                      .+++++|+++++++.            ..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..+. 
T Consensus        89 ~~~v~~Ll~~g~~~~------------~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~  155 (240)
T 3eu9_A           89 LSMVVQLMKYGADPS------------LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHS  155 (240)
T ss_dssp             HHHHHHHHHTTCCTT------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCS
T ss_pred             HHHHHHHHHcCCCCc------------ccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCCh
Confidence            999999999987754            56788999999999999999999999999988 7889999999999997665 


Q ss_pred             HHHHHHHHhcCCcccccCCC-CCCcHHHHHHHhcCcchhHHhhhcccccCC
Q 026423          188 TDIACFIIDQRPESLNHRLP-EELTLLHSAVMRQNYGEPMIFISLNKCLSI  237 (238)
Q Consensus       188 ~~~~~~Ll~~~~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~  237 (238)
                      .+++++|++.+ ++++..+. .|.||||+|+..++.+++++|+++|++++.
T Consensus       156 ~~~~~~L~~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  205 (240)
T 3eu9_A          156 VDPTRLLLTFN-VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDA  205 (240)
T ss_dssp             STTHHHHHHTT-CCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTC
T ss_pred             HHHHHHHHhcC-CCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            89999999999 99999987 899999999999999999999999999875

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=7.4e-37  Score=230.45  Aligned_cols=207  Identities=19%  Similarity=0.201  Sum_probs=158.3

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhC
Q 026423           28 MDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVG  107 (238)
Q Consensus        28 ~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~  107 (238)
                      +.++|+.|+..|+.+++++|++.|.++....+..|.||||+|+..|+.+++++|+ ..+.+++.++..|.||||+|+..|
T Consensus         5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~   83 (285)
T 1wdy_A            5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL-RHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCcccCCCCCCHHHHHHHcC
Confidence            3568999999999999999999999993334888999999999999999999999 567788899999999999999999


Q ss_pred             CHHHHHHHHhhCccccCCCCCCC---------------------ccccccc----------CCCCCcHHHHHHHcCCHHH
Q 026423          108 DPAIVSTILKYAPAITNGTESEP---------------------ESLLRIT----------DDEGNTPLHNAVRNKHENV  156 (238)
Q Consensus       108 ~~~~~~~ll~~~~~~~~~~~~~~---------------------~~~~~~~----------~~~~~~~l~~a~~~~~~~~  156 (238)
                      +.+++++|+++|+++......+.                     ...++..          +..|.||||+|+..|+.++
T Consensus        84 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  163 (285)
T 1wdy_A           84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV  163 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred             CHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHH
Confidence            99999999999987654332221                     1111111          4556677777777777777


Q ss_pred             HHHHHHc-CCccccccCCCCCCHHHHHHHcCc----HHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhh-
Q 026423          157 VRMLVKK-DRIPLGYLNNAEQTPLSIAIDSSL----TDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFIS-  230 (238)
Q Consensus       157 ~~~ll~~-~~~~~~~~~~~g~t~l~~a~~~~~----~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~-  230 (238)
                      +++|++. |+++ +..+..|.||||+|+..++    .+++++|++.| ++++.++..|.||||+|+..++.+++++|++ 
T Consensus       164 v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  241 (285)
T 1wdy_A          164 LKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ  241 (285)
T ss_dssp             HHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTT-CCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS
T ss_pred             HHHHHHhcCCCC-CccCCCCCCHHHHHHHccccchHHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc
Confidence            7777765 5555 5666677777777777666    67777777776 6777777777777777777777777777777 


Q ss_pred             cccccCC
Q 026423          231 LNKCLSI  237 (238)
Q Consensus       231 ~g~~~~~  237 (238)
                      .|++++.
T Consensus       242 ~g~~~~~  248 (285)
T 1wdy_A          242 EHIEIND  248 (285)
T ss_dssp             SSCCTTC
T ss_pred             cCCCccc
Confidence            6776654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=4.6e-38  Score=229.25  Aligned_cols=185  Identities=18%  Similarity=0.220  Sum_probs=169.4

Q ss_pred             CCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhh
Q 026423           39 GDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKY  118 (238)
Q Consensus        39 ~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~  118 (238)
                      |+.+++++|+++|.++....+..|.||||+|+..|+.+++++|+ ..+.+++.++..|.||||+|+..++.+++++|+++
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   80 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL-EASADANIQDNMGRTPLHAAVSADAQGVFQILIRN   80 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            67888999999999995556899999999999999999999999 56778899999999999999999999999999998


Q ss_pred             CccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 026423          119 APAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQR  198 (238)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  198 (238)
                      ++..           ++..+..|.||||+|+..++.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++.|
T Consensus        81 ~~~~-----------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  148 (223)
T 2f8y_A           81 RATD-----------LDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNG  148 (223)
T ss_dssp             TTSC-----------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCC-----------cccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence            7522           2357789999999999999999999999999988 788999999999999999999999999998


Q ss_pred             CcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCC
Q 026423          199 PESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  237 (238)
Q Consensus       199 ~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~  237 (238)
                       ++++.+|..|.||||+|+..++.+++++|+++|++++.
T Consensus       149 -~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  186 (223)
T 2f8y_A          149 -ANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI  186 (223)
T ss_dssp             -CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             -CCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcc
Confidence             99999999999999999999999999999999999875

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=3.5e-38  Score=235.07  Aligned_cols=205  Identities=17%  Similarity=0.150  Sum_probs=169.2

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHh----hhhccccccC----CCCchHHHHHH---HcCCcchHHHHHHcCc----------
Q 026423           28 MDHELLNVLRRGDEHQISLIAG----RMQNIFSTMS----PRGNTVLHMAI---RFRNHKVIPEILRRRD----------   86 (238)
Q Consensus        28 ~~~~l~~A~~~~~~~~v~~Ll~----~~~~~~~~~~----~~g~t~L~~a~---~~~~~~~~~~Ll~~~~----------   86 (238)
                      +.++||.|+..|+.+.++.|++    .|.++ +..+    ..|.||||+|+   ..|+.+++++|++.+.          
T Consensus         5 ~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   83 (260)
T 3jxi_A            5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRL-TDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN   83 (260)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred             hHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-chhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence            4568999999999996555554    88887 5444    77999999999   6799999999996432          


Q ss_pred             cccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCC--CcccccccCCCCCcHHHHHHHcCCHHHHHHHHH--
Q 026423           87 SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESE--PESLLRITDDEGNTPLHNAVRNKHENVVRMLVK--  162 (238)
Q Consensus        87 ~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~--  162 (238)
                      ...+..+..|.||||+|+..|+.+++++|+++|+++.......  .....+..+..|.||||+|+..|+.+++++|++  
T Consensus        84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  163 (260)
T 3jxi_A           84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG  163 (260)
T ss_dssp             CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            2234455689999999999999999999999998865322100  000111222689999999999999999999999  


Q ss_pred             -cCCccccccCCCCCCHHHHHHHcCc---------HHHHHHHHhcCCccc-------ccCCCCCCcHHHHHHHhcCcchh
Q 026423          163 -KDRIPLGYLNNAEQTPLSIAIDSSL---------TDIACFIIDQRPESL-------NHRLPEELTLLHSAVMRQNYGEP  225 (238)
Q Consensus       163 -~~~~~~~~~~~~g~t~l~~a~~~~~---------~~~~~~Ll~~~~~~~-------~~~~~~g~t~l~~A~~~~~~~~~  225 (238)
                       .|+++ +..|..|+||||+|+..++         .+++++|++.| +++       +.+|..|+||||+|+..|+.+++
T Consensus       164 ~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v  241 (260)
T 3jxi_A          164 HKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC-AKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIF  241 (260)
T ss_dssp             SCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHH-HHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhC-cccccccchhhcccCCCCCHHHHHHHcCCHHHH
Confidence             88888 7899999999999998877         79999999999 888       77999999999999999999999


Q ss_pred             HHhhhccccc
Q 026423          226 MIFISLNKCL  235 (238)
Q Consensus       226 ~~L~~~g~~~  235 (238)
                      ++|+++|++.
T Consensus       242 ~~Ll~~g~~~  251 (260)
T 3jxi_A          242 QHIIRREIAD  251 (260)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHhCCCc
Confidence            9999999764

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=4.6e-37  Score=224.65  Aligned_cols=211  Identities=17%  Similarity=0.141  Sum_probs=178.0

Q ss_pred             chhhhhhhccccCCCCCCCCCCCCCCHHHHHHHHcCCHHHHHHHHhhh--hccccccCCCCchHHHHHHHcCCcchHHHH
Q 026423            4 RSFEMTEFGTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRM--QNIFSTMSPRGNTVLHMAIRFRNHKVIPEI   81 (238)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L   81 (238)
                      ++.+++++.++....... .....+.+|||+|+..|+.+++++|+++|  .++....+..|.||||+|+..|+.+++++|
T Consensus        13 g~~~~v~~Ll~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L   91 (228)
T 2dzn_A           13 NEFFKVQELLHSKPSLLL-QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL   91 (228)
T ss_dssp             TCHHHHHHHHHHCGGGTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHH
T ss_pred             CCHHHHHHHHhcCccccc-cCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            455666665444322222 12344566899999999999999999999  666232788999999999999999999999


Q ss_pred             HHcC-ccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHH
Q 026423           82 LRRR-DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRML  160 (238)
Q Consensus        82 l~~~-~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l  160 (238)
                      ++.+ ..+++..+..|.||||+|+..++.+++++|+++|+++.            ..+..|.||||+|+..|+.+++++|
T Consensus        92 l~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~------------~~~~~g~t~L~~A~~~~~~~~v~~L  159 (228)
T 2dzn_A           92 YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR------------IKDKFNQIPLHRAASVGSLKLIELL  159 (228)
T ss_dssp             HSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC------------CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc------------ccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            9543 27788899999999999999999999999999987754            5788999999999999999999999


Q ss_pred             HHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHH-hcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhc
Q 026423          161 VKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFII-DQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISL  231 (238)
Q Consensus       161 l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll-~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  231 (238)
                      ++.|....+..+..|.||||+|+..|+.+++++|+ +.| ++++.+|..|.||+++|+..   +++++|+++
T Consensus       160 l~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~g-a~~~~~~~~g~t~l~~A~~~---~~~~~l~~~  227 (228)
T 2dzn_A          160 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG-AEYDLVDNKGAKAEDVALNE---QVKKFFLNN  227 (228)
T ss_dssp             HTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-CCSCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred             HhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC-CCCCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence            99994444889999999999999999999999999 777 99999999999999999654   778888764

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=5.2e-37  Score=231.12  Aligned_cols=203  Identities=21%  Similarity=0.243  Sum_probs=159.8

Q ss_pred             chhhhhhhccccCCCC--CCCCCCCCCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHH
Q 026423            4 RSFEMTEFGTDYKEPT--MDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEI   81 (238)
Q Consensus         4 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L   81 (238)
                      ++.+++++.++.....  ++. ....+.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|
T Consensus        20 g~~~~v~~Ll~~g~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~~~~~v~~L   97 (282)
T 1oy3_D           20 QHEPFLDFLLGFSAGHEYLDL-QNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLACRVRAHTCACVL   97 (282)
T ss_dssp             TCHHHHHHHHHHHTTSGGGGC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHHTTTTCHHHHHHH
T ss_pred             CCHHHHHHHHhcCCCcccccc-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCcchhHhh
Confidence            4566666654332210  111 2234556899999999999999999999999 88899999999999999999999999


Q ss_pred             HHcCc----------------------------------------------cccccCCCCCCcHHHHHHHhCCHHHHHHH
Q 026423           82 LRRRD----------------------------------------------SLLRKNNWKGETPLHIAARVGDPAIVSTI  115 (238)
Q Consensus        82 l~~~~----------------------------------------------~~~~~~~~~g~~~l~~a~~~~~~~~~~~l  115 (238)
                      ++...                                              ..++.++..|.||||+|+..|+.+++++|
T Consensus        98 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  177 (282)
T 1oy3_D           98 LQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL  177 (282)
T ss_dssp             SSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHH
Confidence            95332                                              23667888999999999999999999999


Q ss_pred             HhhCccccCCCCCCCcccccccC-CCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHH
Q 026423          116 LKYAPAITNGTESEPESLLRITD-DEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFI  194 (238)
Q Consensus       116 l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  194 (238)
                      +++|+++.            ..+ ..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..|+.+++++|
T Consensus       178 l~~g~~~~------------~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~L  244 (282)
T 1oy3_D          178 RDAGADLN------------KPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALLRPNPILARLL  244 (282)
T ss_dssp             HHHTCCTT------------CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHTSSCHHHHHHH
T ss_pred             HHcCCCCC------------CCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-cccccCCCCHHHHHHHcCCcHHHHHH
Confidence            99998765            344 35999999999999999999999999998 78999999999999999999999999


Q ss_pred             HhcCCcccccCCCCCCcHHHHHHHhcCc
Q 026423          195 IDQRPESLNHRLPEELTLLHSAVMRQNY  222 (238)
Q Consensus       195 l~~~~~~~~~~~~~g~t~l~~A~~~~~~  222 (238)
                      +++| ++++.++..|.||+++|....+.
T Consensus       245 l~~g-a~~~~~~~~g~tpl~~a~~~~~~  271 (282)
T 1oy3_D          245 RAHG-APEPEDGGDKLSPCSSSGSDSDS  271 (282)
T ss_dssp             HHTT-CCCCCCC----------------
T ss_pred             HHcC-CCcCcCCCcccccccccCCcccc
Confidence            9999 99999999999999999876543

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2.5e-36  Score=234.05  Aligned_cols=194  Identities=21%  Similarity=0.294  Sum_probs=176.9

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHhh-hhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHh
Q 026423           28 MDHELLNVLRRGDEHQISLIAGR-MQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARV  106 (238)
Q Consensus        28 ~~~~l~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~  106 (238)
                      +.++|+.|+..|+.+.++.|+.. +.++ +..+..|.||||+|+..|+.+++++|+ ..+.+++.++..|.||||+|+..
T Consensus        24 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~  101 (351)
T 3utm_A           24 KKDELLEAARSGNEEKLMALLTPLNVNC-HASDGRKSTPLHLAAGYNRVRIVQLLL-QHGADVHAKDKGGLVPLHNACSY  101 (351)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHCCTTTTTC-CCSSTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             cchhHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCccCCCCCcHHHHHHHC
Confidence            34589999999999999999986 6777 888999999999999999999999999 56788899999999999999999


Q ss_pred             CCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccc----------------
Q 026423          107 GDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGY----------------  170 (238)
Q Consensus       107 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~----------------  170 (238)
                      |+.+++++|+++|+++.            ..+..|.||||+|+..|+.+++++|+++|+++ +.                
T Consensus       102 g~~~iv~~Ll~~g~~~~------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~  168 (351)
T 3utm_A          102 GHYEVTELLLKHGACVN------------AMDLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPE  168 (351)
T ss_dssp             TCHHHHHHHHHTTCCTT------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHH
T ss_pred             CCHHHHHHHHHCCCCCC------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhh
Confidence            99999999999997754            57789999999999999999999999999876 33                


Q ss_pred             --------------------------------------cCCCCCCHHHHHHHc---CcHHHHHHHHhcCCcccccCCCCC
Q 026423          171 --------------------------------------LNNAEQTPLSIAIDS---SLTDIACFIIDQRPESLNHRLPEE  209 (238)
Q Consensus       171 --------------------------------------~~~~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~g  209 (238)
                                                            .+..|.||||+|+..   +..+++++|++.| ++++.++..|
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g-~~~~~~~~~g  247 (351)
T 3utm_A          169 LRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKG-ANVNEKNKDF  247 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTT-CCTTCCCTTC
T ss_pred             hHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcC-CCcCCcCCCC
Confidence                                                  235678999999998   6689999999999 9999999999


Q ss_pred             CcHHHHHHHhcCcchhHHhhhcccccCC
Q 026423          210 LTLLHSAVMRQNYGEPMIFISLNKCLSI  237 (238)
Q Consensus       210 ~t~l~~A~~~~~~~~~~~L~~~g~~~~~  237 (238)
                      .||||+|+..|+.+++++|+++|++++.
T Consensus       248 ~t~L~~A~~~g~~~~v~~Ll~~ga~~n~  275 (351)
T 3utm_A          248 MTPLHVAAERAHNDVMEVLHKHGAKMNA  275 (351)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            9999999999999999999999999985

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=3.6e-37  Score=232.42  Aligned_cols=200  Identities=16%  Similarity=0.125  Sum_probs=177.3

Q ss_pred             chhhhhhh----ccccCCCCCCCCCCCCCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHH
Q 026423            4 RSFEMTEF----GTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIP   79 (238)
Q Consensus         4 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~   79 (238)
                      ++.+++++    |++++..        .+.+|||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.++++
T Consensus        42 g~~~~v~~Ll~~g~~~~~~--------~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~  112 (285)
T 3kea_A           42 NNVRLVCTLLNAGALKNLL--------ENEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVK  112 (285)
T ss_dssp             TCHHHHHHHHHTTGGGSCC--------TTCCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHhCCCCCCCC--------CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHH
Confidence            44555555    4554444        1456999999999999999999999999 888999999999999999999999


Q ss_pred             HHHHcCccccccCCCCC-CcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCC-CCCcHHHHHHHcCCHHHH
Q 026423           80 EILRRRDSLLRKNNWKG-ETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDD-EGNTPLHNAVRNKHENVV  157 (238)
Q Consensus        80 ~Ll~~~~~~~~~~~~~g-~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~  157 (238)
                      +|++ .+.+++.++..| .||||+|+..|+.+++++|+++++..              .+. .|.||||+|+..|+.+++
T Consensus       113 ~Ll~-~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~--------------~~~~~g~t~L~~A~~~g~~~~v  177 (285)
T 3kea_A          113 LFVK-KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--------------FDLAILLSCIHITIKNGHVDMM  177 (285)
T ss_dssp             HHHH-HCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT--------------CCCSTHHHHHHHHHHTTCHHHH
T ss_pred             HHHh-cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc--------------ccccCCccHHHHHHHcChHHHH
Confidence            9995 578889999999 79999999999999999999998663              222 889999999999999999


Q ss_pred             HHHHHcCCccccccCCCCCCH-HHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccC
Q 026423          158 RMLVKKDRIPLGYLNNAEQTP-LSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLS  236 (238)
Q Consensus       158 ~~ll~~~~~~~~~~~~~g~t~-l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~  236 (238)
                      ++|+++|+++ +..+..|.|| ||+|+..|+.+++++|+++| ++++.++.       .|+..++.+++++|+++|++++
T Consensus       178 ~~Ll~~gad~-n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~g-ad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~~~  248 (285)
T 3kea_A          178 ILLLDYMTST-NTNNSLLFIPDIKLAIDNKDIEMLQALFKYD-INIYSANL-------ENVLLDDAEIAKMIIEKHVEYK  248 (285)
T ss_dssp             HHHHHHHHHT-CTTCCCBCCTTHHHHHHHTCHHHHHHHTTSC-BCSTTTTG-------GGGTTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCCC-CcccCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCCCh-------hhhhcCCHHHHHHHHHcCCCCC
Confidence            9999999988 7899999998 99999999999999999999 99998873       5677999999999999999875

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=8.4e-37  Score=229.30  Aligned_cols=187  Identities=19%  Similarity=0.221  Sum_probs=172.9

Q ss_pred             HHHHHHHcCCHHHHHHHHhhhhc--cccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHH----
Q 026423           31 ELLNVLRRGDEHQISLIAGRMQN--IFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAA----  104 (238)
Q Consensus        31 ~l~~A~~~~~~~~v~~Ll~~~~~--~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~----  104 (238)
                      ++|.|+..|+.+.++.+++.+.+  + +..|..|.||||+|+..|+.+++++|++.+..+++..+..|.||||+|+    
T Consensus        79 ~l~~a~~~~~~~~~~~l~~~~~~~~~-n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~  157 (276)
T 4hbd_A           79 DAHPELVRRHLVTFRAMSARLLDYVV-NIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL  157 (276)
T ss_dssp             TCCHHHHHHHHHHHHHHCHHHHHHHH-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhcC-cCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence            46788899999999999998876  5 8889999999999999999999999997666689999999999999999    


Q ss_pred             -HhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHH
Q 026423          105 -RVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAI  183 (238)
Q Consensus       105 -~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~  183 (238)
                       ..++.+++++|++.|....            ..+..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+
T Consensus       158 ~~~~~~~~v~~Ll~~g~~~~------------~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~  224 (276)
T 4hbd_A          158 KTQDDIETVLQLFRLGNINA------------KASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCAC  224 (276)
T ss_dssp             CSHHHHHHHHHHHHHSCTTC------------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             hhhhhHHHHHHHHHcCCCcc------------ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHH
Confidence             6789999999999996543            46778999999999999999999999999998 789999999999999


Q ss_pred             HcCcHHHHHHHHh-cCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcc
Q 026423          184 DSSLTDIACFIID-QRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN  232 (238)
Q Consensus       184 ~~~~~~~~~~Ll~-~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g  232 (238)
                      ..|+.+++++|++ .| ++++.+|..|.|||++|+..|+.+++++|++++
T Consensus       225 ~~g~~~iv~~Ll~~~g-ad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          225 EHGHKEIAGLLLAVPS-CDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHTCHHHHHHHHTSTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HCCCHHHHHHHHhcCC-CCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            9999999999999 56 999999999999999999999999999999875

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=2.8e-35  Score=209.72  Aligned_cols=163  Identities=18%  Similarity=0.169  Sum_probs=152.7

Q ss_pred             cccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCccccc
Q 026423           56 STMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLR  135 (238)
Q Consensus        56 ~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~  135 (238)
                      +..+..|.||||+|+..|+.+++++|++ .+.+++.++..|.||||+|+..++.+++++|+++++++.            
T Consensus        29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------   95 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGMENAIDKLVE-NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN------------   95 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTCGGGHHHHHH-HHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT------------
T ss_pred             hCcCCCCCCHHHHHHHcCCHHHHHHHHH-hccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCC------------
Confidence            5678899999999999999999999995 577788999999999999999999999999999997754            


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHH
Q 026423          136 ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHS  215 (238)
Q Consensus       136 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~  215 (238)
                      ..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++.| ++++.+|..|.||+++
T Consensus        96 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~  173 (192)
T 2rfm_A           96 TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELG-ADISARDLTGLTAEAS  173 (192)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCBCTTSCBHHHH
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHH
Confidence            57889999999999999999999999999988 788999999999999999999999999998 9999999999999999


Q ss_pred             HHHhcCcchhHHhhhccc
Q 026423          216 AVMRQNYGEPMIFISLNK  233 (238)
Q Consensus       216 A~~~~~~~~~~~L~~~g~  233 (238)
                      |+..++.+++++|+++|.
T Consensus       174 A~~~~~~~~v~~Ll~~~~  191 (192)
T 2rfm_A          174 ARIFGRQEVIKIFTEVRR  191 (192)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHhccC
Confidence            999999999999999874

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=6e-36  Score=227.29  Aligned_cols=216  Identities=15%  Similarity=0.099  Sum_probs=173.8

Q ss_pred             chhhhhhh----ccccCCCCCCCCCCCCCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHH
Q 026423            4 RSFEMTEF----GTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIP   79 (238)
Q Consensus         4 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~   79 (238)
                      ++.+++++    |++++..+.      .+.+|||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.++++
T Consensus        51 g~~~~v~~Ll~~g~~~~~~~~------~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~  123 (299)
T 1s70_B           51 GDTEEVLRLLERGADINYANV------DGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAE  123 (299)
T ss_dssp             TCHHHHHHHHHHCCCTTCBCT------TCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             CCHHHHHHHHHcCCCCcccCC------CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHH
Confidence            34455554    555544432      3455899999999999999999999999 888999999999999999999999


Q ss_pred             HHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhh-CccccCCCCC--------------CCcccccccCCCCCcH
Q 026423           80 EILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKY-APAITNGTES--------------EPESLLRITDDEGNTP  144 (238)
Q Consensus        80 ~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~--------------~~~~~~~~~~~~~~~~  144 (238)
                      +|+ ..+.+++..+..|.||||+|+..++.+++++++.. +.++......              .........+..|.||
T Consensus       124 ~Ll-~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~  202 (299)
T 1s70_B          124 YLI-SQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTA  202 (299)
T ss_dssp             HHH-HTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCH
T ss_pred             HHH-hCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCH
Confidence            999 56778899999999999999999999999888764 3221100000              0000011345789999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcch
Q 026423          145 LHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGE  224 (238)
Q Consensus       145 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~  224 (238)
                      ||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|+++| ++++.+|..|.||+++|... ..+.
T Consensus       203 L~~A~~~g~~~~v~~Ll~~g~d~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~~-~~~~  279 (299)
T 1s70_B          203 LHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENL-CDMEAVNKVGQTAFDVADED-ILGY  279 (299)
T ss_dssp             HHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTTTSCCSG-GGHH
T ss_pred             HHHHHHCCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHhcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHH-HHHH
Confidence            99999999999999999999988 789999999999999999999999999999 99999999999999999654 3344


Q ss_pred             hHHhhh
Q 026423          225 PMIFIS  230 (238)
Q Consensus       225 ~~~L~~  230 (238)
                      ++.+++
T Consensus       280 l~~l~~  285 (299)
T 1s70_B          280 LEELQK  285 (299)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=7.7e-35  Score=203.90  Aligned_cols=167  Identities=21%  Similarity=0.197  Sum_probs=112.1

Q ss_pred             HHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHH
Q 026423           31 ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPA  110 (238)
Q Consensus        31 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~  110 (238)
                      +||.|+..|+.+.+++|++.+.+..+..+..|.||||+|+..|+.+++++|+ ..+.+++.++..|.||||+|+..++.+
T Consensus         5 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~   83 (172)
T 3v30_A            5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLL-EWGADPHILAKERESALSLASTGGYTD   83 (172)
T ss_dssp             CHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHH-HHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             hHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCchhhcccCCCHHHHHHHCCCHH
Confidence            5777777777777777777776643666777777777777777777777777 345566666777777777777777777


Q ss_pred             HHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHH
Q 026423          111 IVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDI  190 (238)
Q Consensus       111 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  190 (238)
                      ++++|+++++++.            ..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.|||++|+..|+.++
T Consensus        84 ~v~~Ll~~g~~~~------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~  150 (172)
T 3v30_A           84 IVGLLLERDVDIN------------IYDWNGGTPLLYAVRGNHVKCVEALLARGADL-TTEADSGYTPMDLAVALGYRKV  150 (172)
T ss_dssp             HHHHHHTTTCCTT------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHcCCCCC------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHhCcHHH
Confidence            7777777665533            45666777777777777777777777777666 5666677777777777777777


Q ss_pred             HHHHHhcCCcccccCCCCCCcH
Q 026423          191 ACFIIDQRPESLNHRLPEELTL  212 (238)
Q Consensus       191 ~~~Ll~~~~~~~~~~~~~g~t~  212 (238)
                      +++|++++ +++..++..|.||
T Consensus       151 ~~~L~~~~-~~~~~~~~~~~~p  171 (172)
T 3v30_A          151 QQVIENHI-LKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHHHHH-HHHSCC-------
T ss_pred             HHHHHHHH-HHHhcccCCCCCC
Confidence            77777776 6666666555554

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=5e-35  Score=202.87  Aligned_cols=158  Identities=16%  Similarity=0.194  Sum_probs=85.2

Q ss_pred             CchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCC
Q 026423           62 GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEG  141 (238)
Q Consensus        62 g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~  141 (238)
                      ..||||+|+..|+.+++++|+ +.+.+++.++..|.||||+|+. |+.+++++|+++++++.            ..+..|
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll-~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~------------~~~~~g   70 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLL-QNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPD------------LKDRTG   70 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHT-TSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTT------------CCCTTS
T ss_pred             HhhHHHHHHHcCCHHHHHHHH-hCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCC------------CCCCCC
Confidence            344555555555555555555 3344444555555555555555 55555555555544322            344455


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcC
Q 026423          142 NTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQN  221 (238)
Q Consensus       142 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~  221 (238)
                      .||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++.|...++.++..|.|||++|+..++
T Consensus        71 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  149 (162)
T 1ihb_A           71 FAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR  149 (162)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCC
Confidence            55555555555555555555555554 45555566666666666666666666665522245555666666666666666


Q ss_pred             cchhHHhhhcccc
Q 026423          222 YGEPMIFISLNKC  234 (238)
Q Consensus       222 ~~~~~~L~~~g~~  234 (238)
                      .+++++|+++|+|
T Consensus       150 ~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          150 NEVVSLMQANGAG  162 (162)
T ss_dssp             HHHHHHHHHTC--
T ss_pred             HHHHHHHHHhCCC
Confidence            6666666666654

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=6.5e-35  Score=203.30  Aligned_cols=160  Identities=15%  Similarity=0.130  Sum_probs=105.1

Q ss_pred             CCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCC
Q 026423           61 RGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDE  140 (238)
Q Consensus        61 ~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~  140 (238)
                      .|.||||+|+..|+.+++++|++ .+.+++.++..|.||||+|+..|+.+++++|+++++++.            ..+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------~~~~~   68 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIE-QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ------------LLGKG   68 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHH-HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------------CCCTT
T ss_pred             CCcchHHHHHHCCCHHHHHHHHH-cCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC------------CcCCC
Confidence            35566666666666666666663 344556666666666666666666666666666665433            34556


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhc
Q 026423          141 GNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQ  220 (238)
Q Consensus       141 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~  220 (238)
                      |.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++.| ++++.++..|.||+++|+..+
T Consensus        69 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~  146 (167)
T 3v31_A           69 RESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESG-ADPTIETDSGYNSMDLAVALG  146 (167)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcC
Confidence            666666666666666666666666665 566666777777777777777777777666 666666777777777777777


Q ss_pred             CcchhHHhhhccccc
Q 026423          221 NYGEPMIFISLNKCL  235 (238)
Q Consensus       221 ~~~~~~~L~~~g~~~  235 (238)
                      +.+++++|+++++++
T Consensus       147 ~~~~~~~L~~~~~~~  161 (167)
T 3v31_A          147 YRSVQQVIESHLLKL  161 (167)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHH
Confidence            777777777666543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=9.9e-35  Score=203.35  Aligned_cols=162  Identities=19%  Similarity=0.178  Sum_probs=151.2

Q ss_pred             CchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCC
Q 026423           62 GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEG  141 (238)
Q Consensus        62 g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~  141 (238)
                      +.+|||.|+..|+.+++++|++.++..++.++..|.||||+|+..|+.+++++|+++|+++.            ..+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------~~~~~g   69 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH------------ILAKER   69 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT------------CCCTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCch------------hhcccC
Confidence            46899999999999999999987777789999999999999999999999999999997754            578899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcC
Q 026423          142 NTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQN  221 (238)
Q Consensus       142 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~  221 (238)
                      .||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++.| ++++.+|..|.|||++|+..++
T Consensus        70 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~  147 (172)
T 3v30_A           70 ESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARG-ADLTTEADSGYTPMDLAVALGY  147 (172)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTC
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHhCc
Confidence            99999999999999999999999988 788999999999999999999999999999 9999999999999999999999


Q ss_pred             cchhHHhhhcccccCC
Q 026423          222 YGEPMIFISLNKCLSI  237 (238)
Q Consensus       222 ~~~~~~L~~~g~~~~~  237 (238)
                      .+++++|+++|+++..
T Consensus       148 ~~~~~~L~~~~~~~~~  163 (172)
T 3v30_A          148 RKVQQVIENHILKLFQ  163 (172)
T ss_dssp             HHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999988653

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=3.1e-34  Score=200.28  Aligned_cols=158  Identities=23%  Similarity=0.221  Sum_probs=99.4

Q ss_pred             CCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCC
Q 026423           60 PRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDD  139 (238)
Q Consensus        60 ~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~  139 (238)
                      ..+.++|++|+..|+.+++++|++ .+.+++.++..|.||||+|+..|+.+++++|+++++++.            ..+.
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------~~~~   78 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMA-NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN------------AVDH   78 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------------CCCT
T ss_pred             CcccchHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------------ccCC
Confidence            344556666666666666666663 444555555666666666666666666666666654432            3455


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHh
Q 026423          140 EGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMR  219 (238)
Q Consensus       140 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~  219 (238)
                      .|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|+++| ++++.+|..|.||+++|+..
T Consensus        79 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~  156 (169)
T 2y1l_E           79 AGMTPLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNG-ADVNAQDKFGKTAFDISIDN  156 (169)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHh
Confidence            6666666666666666666666666665 556666667777777667777777777666 66666666677777777777


Q ss_pred             cCcchhHHhhhcc
Q 026423          220 QNYGEPMIFISLN  232 (238)
Q Consensus       220 ~~~~~~~~L~~~g  232 (238)
                      ++.+++++|+++|
T Consensus       157 ~~~~~~~~L~~~G  169 (169)
T 2y1l_E          157 GNEDLAEILQKLN  169 (169)
T ss_dssp             TCHHHHHHHHTC-
T ss_pred             CCHHHHHHHHHcC
Confidence            7777777766655

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=2.2e-34  Score=199.60  Aligned_cols=156  Identities=26%  Similarity=0.341  Sum_probs=146.8

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhC
Q 026423           28 MDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVG  107 (238)
Q Consensus        28 ~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~  107 (238)
                      ..++|+.|+..|+.+++++|+++|.++ +..+..|.||||+|+. |+.+++++|+ ..+.+++.++..|.||||+|+..+
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLL-LRGANPDLKDRTGFAVIHDAARAG   81 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcC
Confidence            456899999999999999999999999 8889999999999999 9999999999 467888999999999999999999


Q ss_pred             CHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCc
Q 026423          108 DPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSL  187 (238)
Q Consensus       108 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  187 (238)
                      +.+++++|+++++++.            ..+..|.||||+|++.|+.+++++|++.|++.++..+..|.||||+|+..|+
T Consensus        82 ~~~~v~~Ll~~g~~~~------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  149 (162)
T 1ihb_A           82 FLDTLQTLLEFQADVN------------IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR  149 (162)
T ss_dssp             CHHHHHHHHHTTCCTT------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CHHHHHHHHHcCCCCC------------CcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCC
Confidence            9999999999987754            5788999999999999999999999999998768899999999999999999


Q ss_pred             HHHHHHHHhcC
Q 026423          188 TDIACFIIDQR  198 (238)
Q Consensus       188 ~~~~~~Ll~~~  198 (238)
                      .+++++|+++|
T Consensus       150 ~~~~~~Ll~~G  160 (162)
T 1ihb_A          150 NEVVSLMQANG  160 (162)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhC
Confidence            99999999998

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=6.6e-35  Score=224.09  Aligned_cols=184  Identities=14%  Similarity=0.034  Sum_probs=148.2

Q ss_pred             CCCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCC---cchHHHHHHcCccccccCCCCCCcHHHH
Q 026423           26 TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRN---HKVIPEILRRRDSLLRKNNWKGETPLHI  102 (238)
Q Consensus        26 ~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~---~~~~~~Ll~~~~~~~~~~~~~g~~~l~~  102 (238)
                      ..+.||||+|+..|+.++|++|+++|+++ +..+..|.||||+|+..|+   .+++..|++....+++.++..|+||||+
T Consensus       129 ~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~  207 (327)
T 1sw6_A          129 EHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHH  207 (327)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHH
Confidence            34455999999999999999999999999 8999999999999999998   8999999977768899999999999999


Q ss_pred             HHH----hCCHHHHHHHHhhCccccCCC--------CCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccc
Q 026423          103 AAR----VGDPAIVSTILKYAPAITNGT--------ESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGY  170 (238)
Q Consensus       103 a~~----~~~~~~~~~ll~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~  170 (238)
                      |+.    .|+.+++++|++.+.......        .......++..+..|.||||.|+.      +++|++.+   ++.
T Consensus       208 A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~~---~n~  278 (327)
T 1sw6_A          208 IIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIANM---LNA  278 (327)
T ss_dssp             HHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHHT---TTC
T ss_pred             HHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHhC---CCC
Confidence            999    899999999998753211000        000122345688899999999985      89999884   377


Q ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhc
Q 026423          171 LNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQ  220 (238)
Q Consensus       171 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~  220 (238)
                      .+..|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+++|
T Consensus       279 ~d~~G~TpLh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          279 QDSNGDTCLNIAARLGNISIVDALLDYG-ADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHHTT-CCTTCCCTTSCCGGGGTCC--
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhcC
Confidence            8999999999999999999999999999 999999999999999998764

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=100.00  E-value=1.3e-34  Score=204.06  Aligned_cols=162  Identities=18%  Similarity=0.139  Sum_probs=96.0

Q ss_pred             CCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCC
Q 026423           61 RGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDE  140 (238)
Q Consensus        61 ~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~  140 (238)
                      .+.++|+.|+..|+.+++++|++..+.+++..+..|.||||+|+..|+.+++++|+++|+++.            ..+..
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------~~~~~   71 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN------------VMNRG   71 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------------CCCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC------------CcCCC
Confidence            345556666666666666666655555555556666666666666666666666666554432            34555


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhc
Q 026423          141 GNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQ  220 (238)
Q Consensus       141 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~  220 (238)
                      |.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|+++| ++++.+|..|.||+++|+..+
T Consensus        72 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~  149 (179)
T 3f6q_A           72 DDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANG-ALVSICNKYGEMPVDKAKAPL  149 (179)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSSBCCTTSCCGGGGSCHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCcchhccCCCCcHHHHHHHH
Confidence            666666666666666666666666555 455566666666666666666666666665 566666666666666666666


Q ss_pred             CcchhHHhhhcccccC
Q 026423          221 NYGEPMIFISLNKCLS  236 (238)
Q Consensus       221 ~~~~~~~L~~~g~~~~  236 (238)
                      +.+++++|+++|++++
T Consensus       150 ~~~~~~~L~~~g~~~~  165 (179)
T 3f6q_A          150 RELLRERAEKMGQNLN  165 (179)
T ss_dssp             HHHHHHHHHHTTCCCS
T ss_pred             HHHHHHHHHHhhcCcc
Confidence            6666666666666554

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=8.5e-34  Score=207.87  Aligned_cols=167  Identities=22%  Similarity=0.247  Sum_probs=151.7

Q ss_pred             CCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCC
Q 026423           61 RGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDE  140 (238)
Q Consensus        61 ~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~  140 (238)
                      .|.||||+|+..|+.+++++|++..+.+++.++..|.||||+|+..|+.+++++|++.+++.....       .+..+..
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-------~~~~~~~   74 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEP-------MTSELYE   74 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCC-------CCSTTTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhcccc-------ccccCCC
Confidence            589999999999999999999976689999999999999999999999999999999998753211       1356778


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCccccccCC-------------CCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCC
Q 026423          141 GNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNN-------------AEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLP  207 (238)
Q Consensus       141 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-------------~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~  207 (238)
                      |.||||+|+..|+.+++++|++.|+++ +..+.             .|.||||+|+..|+.+++++|+++| ++++.+|.
T Consensus        75 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~  152 (232)
T 2rfa_A           75 GQTALHIAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG-ADIRAQDS  152 (232)
T ss_dssp             TCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTT-CCTTCCCT
T ss_pred             CcCHHHHHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCC
Confidence            999999999999999999999999987 45444             7999999999999999999999998 99999999


Q ss_pred             CCCcHHHHHHHhcCcchh----HHhhhcccccC
Q 026423          208 EELTLLHSAVMRQNYGEP----MIFISLNKCLS  236 (238)
Q Consensus       208 ~g~t~l~~A~~~~~~~~~----~~L~~~g~~~~  236 (238)
                      .|+||||+|+..++.+++    ++|+++|++.+
T Consensus       153 ~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~  185 (232)
T 2rfa_A          153 LGNTVLHILILQPNKTFACQMYNLLLSYDGGDH  185 (232)
T ss_dssp             TSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCS
T ss_pred             CCCCHHHHHHHcCChHHHHHHHHHHHhcCCchh
Confidence            999999999999999988    99999999763

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=1e-33  Score=197.62  Aligned_cols=159  Identities=25%  Similarity=0.371  Sum_probs=146.5

Q ss_pred             CCCCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHH
Q 026423           25 PTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAA  104 (238)
Q Consensus        25 ~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~  104 (238)
                      .....++|+.|+..|+.+++++|+++|.++ +..+..|.||||+|+..|+.+++++|+ ..+.+++..+..|.||||+|+
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~   88 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLL-KNGADVNAVDHAGMTPLRLAA   88 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCccCCCCCCHHHHHH
Confidence            344566899999999999999999999999 888999999999999999999999999 567788999999999999999


Q ss_pred             HhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHH
Q 026423          105 RVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAID  184 (238)
Q Consensus       105 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~  184 (238)
                      ..++.+++++|+++++++.            ..+..|.||||+|+..|+.+++++|+++|+++ +..+..|.||+++|++
T Consensus        89 ~~~~~~~~~~Ll~~g~~~~------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~  155 (169)
T 2y1l_E           89 LFGHLEIVEVLLKNGADVN------------ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISID  155 (169)
T ss_dssp             HTTCHHHHHHHHHTTCCTT------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCC------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence            9999999999999997754            57889999999999999999999999999998 7889999999999999


Q ss_pred             cCcHHHHHHHHhcC
Q 026423          185 SSLTDIACFIIDQR  198 (238)
Q Consensus       185 ~~~~~~~~~Ll~~~  198 (238)
                      .|+.+++++|++.|
T Consensus       156 ~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          156 NGNEDLAEILQKLN  169 (169)
T ss_dssp             TTCHHHHHHHHTC-
T ss_pred             hCCHHHHHHHHHcC
Confidence            99999999999875

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=3.8e-34  Score=210.28  Aligned_cols=199  Identities=17%  Similarity=0.138  Sum_probs=165.5

Q ss_pred             chhhhhhhccccCCC---CCCCCCCCCCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHH
Q 026423            4 RSFEMTEFGTDYKEP---TMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPE   80 (238)
Q Consensus         4 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~   80 (238)
                      ++.+++++.++....   .++.. ...+.+|||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++
T Consensus        19 g~~~~v~~Ll~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~   96 (236)
T 1ikn_D           19 EEKALTMEVIRQVKGDLAFLNFQ-NNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGV   96 (236)
T ss_dssp             TCSSSSSCCCC-----CCCCCCC-CTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             CChhHHHHHHHHhhccHHHhhcc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            445555555443322   22222 234556899999999999999999999999 8889999999999999999999999


Q ss_pred             HHHcCc-----cccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCC-CCCcHHHHHHHcCCH
Q 026423           81 ILRRRD-----SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDD-EGNTPLHNAVRNKHE  154 (238)
Q Consensus        81 Ll~~~~-----~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~a~~~~~~  154 (238)
                      |++.+.     ..++..+..|.||||+|+..|+.+++++|+++|+++.            ..+. .|.||||+|+..|+.
T Consensus        97 Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------~~~~~~g~tpL~~A~~~~~~  164 (236)
T 1ikn_D           97 LTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN------------AQEPCNGRTALHLAVDLQNP  164 (236)
T ss_dssp             HHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT------------CCCTTTCCCHHHHHHHTTCH
T ss_pred             HHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------------CCCCCCCCCHHHHHHHcCCH
Confidence            996553     3367788899999999999999999999999998755            4665 899999999999999


Q ss_pred             HHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccc--cCCCCCCcHHHHHHH
Q 026423          155 NVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLN--HRLPEELTLLHSAVM  218 (238)
Q Consensus       155 ~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~--~~~~~g~t~l~~A~~  218 (238)
                      +++++|+++|+++ +..+..|.|||++|+..|+.+++++|+++| ++..  ..+..|.|+.+.+..
T Consensus       165 ~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~  228 (236)
T 1ikn_D          165 DLVSLLLKCGADV-NRVTYQGYSPYQLTWGRPSTRIQQQLGQLT-LENLQMLPESEDEESYDTESE  228 (236)
T ss_dssp             HHHHHHHTTTCCS-CCCCTTCCCGGGGCTTSSCHHHHHHHHTTS-CGGGSSCCCCCTTTCCCCC--
T ss_pred             HHHHHHHHcCCCC-CcccCCCCCHHHHHHccCchHHHHHHHHcc-hhhhhcCCccchHHHHhhhcc
Confidence            9999999999998 789999999999999999999999999999 6554  777888888765543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=3.6e-33  Score=200.18  Aligned_cols=180  Identities=18%  Similarity=0.170  Sum_probs=158.8

Q ss_pred             chhhhhhhccccCCCCCCCCCCCCCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHH
Q 026423            4 RSFEMTEFGTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILR   83 (238)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~   83 (238)
                      ++.+.++..+.....+++..+. .+.+|||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++
T Consensus        16 g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~   93 (201)
T 3hra_A           16 RDTKKVKEILQDTTYQVDEVDT-EGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQGRTEILAYMLK   93 (201)
T ss_dssp             TCHHHHHHHHTCTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHcCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            4556666655544434444333 3456899999999999999999999999 8899999999999999999999999998


Q ss_pred             cCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhC-ccccCCCCCCCcccccccCCCCCcHHHHHHHcCC-----HHHH
Q 026423           84 RRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYA-PAITNGTESEPESLLRITDDEGNTPLHNAVRNKH-----ENVV  157 (238)
Q Consensus        84 ~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~-----~~~~  157 (238)
                      ..+.+++..+..|.||||+|+..++.+++++|++++ .++            +..+..|.||||+|+..++     .+++
T Consensus        94 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------~~~~~~g~t~L~~A~~~~~~~~~~~~~v  161 (201)
T 3hra_A           94 HATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDI------------DFQNDFGYTALIEAVGLREGNQLYQDIV  161 (201)
T ss_dssp             HSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCT------------TCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred             ccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc------------CCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence            888899999999999999999999999999999998 443            3678899999999999998     9999


Q ss_pred             HHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 026423          158 RMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQR  198 (238)
Q Consensus       158 ~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  198 (238)
                      ++|++.|+++ +..+..|.||||+|++.|+.+++++|+++|
T Consensus       162 ~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          162 KLLMENGADQ-SIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHHHCCCCC-CccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            9999999998 789999999999999999999999999876

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=100.00  E-value=2.1e-34  Score=200.36  Aligned_cols=160  Identities=19%  Similarity=0.200  Sum_probs=131.4

Q ss_pred             CCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccC
Q 026423           59 SPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITD  138 (238)
Q Consensus        59 ~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~  138 (238)
                      +..|.|+||.|+..|+.+++++|++..+...+..+..|.||||+|+..|+.+++++|+++++++.            ..+
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------~~~   72 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH------------AKD   72 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT------------CCC
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCC------------ccC
Confidence            55678888888888888888888866777777777788888888888888888888888876643            567


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHH
Q 026423          139 DEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVM  218 (238)
Q Consensus       139 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~  218 (238)
                      ..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++.| ++++.+|..|.||+++|..
T Consensus        73 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~a~~  150 (165)
T 3twr_A           73 KGGLVPLHNACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRDGNTPLDLVKD  150 (165)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTGGGSCT
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCChhHhHhc
Confidence            78888888888888888888888888887 677888888888888888888888888888 8888888888888888766


Q ss_pred             hcCcchhHHhhhccc
Q 026423          219 RQNYGEPMIFISLNK  233 (238)
Q Consensus       219 ~~~~~~~~~L~~~g~  233 (238)
                       ++.+++++|++.|+
T Consensus       151 -~~~~i~~~L~~~gA  164 (165)
T 3twr_A          151 -GDTDIQDLLRGDAA  164 (165)
T ss_dssp             -TCHHHHHHHHTC--
T ss_pred             -CChHHHHHHhhccc
Confidence             78888888888875

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-34  Score=222.39  Aligned_cols=184  Identities=17%  Similarity=0.172  Sum_probs=153.1

Q ss_pred             HHHHHHHcCCHHHHHHHHhhhhccccc-cCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCC-
Q 026423           31 ELLNVLRRGDEHQISLIAGRMQNIFST-MSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGD-  108 (238)
Q Consensus        31 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~-  108 (238)
                      .+|.|+..+..+++++|++.|.++ +. .+..|.||||+|+..|+.+++++|+ ..+++++.++..|+||||+|+..|+ 
T Consensus       100 ~~~~a~~~~~~~~~~~l~~~g~dv-n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll-~~Gad~n~~d~~g~TpLh~A~~~g~~  177 (327)
T 1sw6_A          100 QQHVSFDSLLQEVNDAFPNTQLNL-NIPVDEHGNTPLHWLTSIANLELVKHLV-KHGSNRLYGDNMGESCLVKAVKSVNN  177 (327)
T ss_dssp             ----CHHHHHHHHHHHCTTSCCCS-CSCCSTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTBCCTTCCCHHHHHHHSSHH
T ss_pred             hhHHHHHhhHHHHHHHHHhcCCCc-ccccCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHhccc
Confidence            357788888889999999999999 77 8999999999999999999999999 5678899999999999999999998 


Q ss_pred             --HHHHHHHHhhC-ccccCCCCCCCcccccccCCCCCcHHHHHHH----cCCHHHHHHHHHc------------------
Q 026423          109 --PAIVSTILKYA-PAITNGTESEPESLLRITDDEGNTPLHNAVR----NKHENVVRMLVKK------------------  163 (238)
Q Consensus       109 --~~~~~~ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~----~~~~~~~~~ll~~------------------  163 (238)
                        .++++.|++.+ ++            ++..+..|.||||+|+.    .|+.+++++|++.                  
T Consensus       178 ~~~~~~~~ll~~~~~~------------~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~  245 (327)
T 1sw6_A          178 YDSGTFEALLDYLYPC------------LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTN  245 (327)
T ss_dssp             HHTTCHHHHHHHHGGG------------GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC--
T ss_pred             ccHHHHHHHHHhhhcc------------ccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhh
Confidence              67888888876 33            33688999999999999    8999999999987                  


Q ss_pred             --CCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCCC
Q 026423          164 --DRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV  238 (238)
Q Consensus       164 --~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~~  238 (238)
                        |+++ +..+..|.||||.|+.      +++|++.   +++.+|..|+||||+|+..|+.+++++|+++|++++++
T Consensus       246 ~~g~~~-~~~~~~g~t~L~~a~~------~~~Ll~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~  312 (327)
T 1sw6_A          246 EKESKP-NDKNGERKDSILENLD------LKWIIAN---MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA  312 (327)
T ss_dssp             ---------------CHHHHHCS------HHHHHHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCC
T ss_pred             cccCCc-ccccccCCChhHHHHH------HHHHHHh---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc
Confidence              6666 7789999999999985      8999987   48999999999999999999999999999999999864

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=3.7e-33  Score=194.41  Aligned_cols=155  Identities=19%  Similarity=0.205  Sum_probs=146.0

Q ss_pred             CHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCC
Q 026423           29 DHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGD  108 (238)
Q Consensus        29 ~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~  108 (238)
                      .+|||.|+..|+.+++++|++.|.++ +..+..|.||||+|+..|+.+++++|++ .+.+++..+..|.||||+|+..++
T Consensus         4 ~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~   81 (167)
T 3v31_A            4 SLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRESALSLACSKGY   81 (167)
T ss_dssp             CCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             cchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHcCC
Confidence            44899999999999999999999998 8889999999999999999999999995 578889999999999999999999


Q ss_pred             HHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcH
Q 026423          109 PAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLT  188 (238)
Q Consensus       109 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  188 (238)
                      .+++++|+++++++.            ..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||+++|+..|+.
T Consensus        82 ~~~v~~Ll~~g~~~~------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~  148 (167)
T 3v31_A           82 TDIVKMLLDCGVDVN------------EYDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGYR  148 (167)
T ss_dssp             HHHHHHHHHHTCCTT------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHHCCCCCC------------cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcH
Confidence            999999999987754            57889999999999999999999999999998 78899999999999999999


Q ss_pred             HHHHHHHhcC
Q 026423          189 DIACFIIDQR  198 (238)
Q Consensus       189 ~~~~~Ll~~~  198 (238)
                      +++++|++++
T Consensus       149 ~~~~~L~~~~  158 (167)
T 3v31_A          149 SVQQVIESHL  158 (167)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999987

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=2.9e-33  Score=199.27  Aligned_cols=157  Identities=17%  Similarity=0.194  Sum_probs=146.7

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHh
Q 026423           27 TMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARV  106 (238)
Q Consensus        27 ~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~  106 (238)
                      .+.+|||+|+..|+.+++++|+++|.++ +..+..|.||||+|+..|+.+++++|++ .+.+++.++..|.||||+|+..
T Consensus        34 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~  111 (192)
T 2rfm_A           34 YNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLS-KGSNVNTKDFSGKTPLMWSIIF  111 (192)
T ss_dssp             TCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHc
Confidence            3455899999999999999999999998 8889999999999999999999999994 6778899999999999999999


Q ss_pred             CCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcC
Q 026423          107 GDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSS  186 (238)
Q Consensus       107 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  186 (238)
                      ++.+++++|+++|+++.            ..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||+++|+..|
T Consensus       112 ~~~~~v~~Ll~~g~~~~------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~  178 (192)
T 2rfm_A          112 GYSEMSYFLLEHGANVN------------DRNLEGETPLIVASKYGRSEIVKKLLELGADI-SARDLTGLTAEASARIFG  178 (192)
T ss_dssp             TCHHHHHHHHHTTCCSS------------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTT
T ss_pred             CCHHHHHHHHHCCCCCC------------CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhC
Confidence            99999999999997754            57889999999999999999999999999988 788999999999999999


Q ss_pred             cHHHHHHHHhcC
Q 026423          187 LTDIACFIIDQR  198 (238)
Q Consensus       187 ~~~~~~~Ll~~~  198 (238)
                      +.+++++|++.+
T Consensus       179 ~~~~v~~Ll~~~  190 (192)
T 2rfm_A          179 RQEVIKIFTEVR  190 (192)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             cHHHHHHHHhcc
Confidence            999999999876

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=100.00  E-value=5.6e-33  Score=191.35  Aligned_cols=154  Identities=21%  Similarity=0.278  Sum_probs=104.8

Q ss_pred             CchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCC
Q 026423           62 GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEG  141 (238)
Q Consensus        62 g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~  141 (238)
                      +.||||+|+..|+.+++++|++..+.+++..+..|.||||+ +..|+.+++++|+++|+++.            ..+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~------------~~~~~g   68 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPN------------VQDTSG   68 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT------------CCCTTS
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC------------CcCCCC
Confidence            35667777777777777777655444566666667777777 66677777777776665533            455667


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcC
Q 026423          142 NTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQN  221 (238)
Q Consensus       142 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~  221 (238)
                      .||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++.  ++++.+|..|.|||++|+..++
T Consensus        69 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~  145 (156)
T 1bd8_A           69 TSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGA  145 (156)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCC
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCc
Confidence            77777777777777777777777665 56666777777777777777777777765  5666777777777777777777


Q ss_pred             cchhHHhhhc
Q 026423          222 YGEPMIFISL  231 (238)
Q Consensus       222 ~~~~~~L~~~  231 (238)
                      .+++++|+++
T Consensus       146 ~~~v~~Ll~~  155 (156)
T 1bd8_A          146 QDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhh
Confidence            7777777653

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=100.00  E-value=7.2e-33  Score=190.21  Aligned_cols=147  Identities=25%  Similarity=0.342  Sum_probs=70.2

Q ss_pred             HHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHH
Q 026423           31 ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPA  110 (238)
Q Consensus        31 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~  110 (238)
                      +|+.|+..|+.+++++|++.|.++ + .+..|.||||+|+..|+.+++++|+ ..+.+++.++..|.||||+|+..++.+
T Consensus         5 ~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~   81 (153)
T 1awc_B            5 KLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLL-RAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHH-TTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcChHH
Confidence            455555555555555555555543 2 2444555555555555555555555 334444444444555555555555555


Q ss_pred             HHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHH
Q 026423          111 IVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDI  190 (238)
Q Consensus       111 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  190 (238)
                      ++++|+++|+++.            ..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||+++|+..|+.++
T Consensus        82 ~v~~Ll~~g~~~~------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i  148 (153)
T 1awc_B           82 IVEVLLKHGADVN------------AKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDL  148 (153)
T ss_dssp             HHHHHHTTTCCTT------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHcCCCCC------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHH
Confidence            5555554443322            23344444444444444444444444444443 3344444444444444444444


Q ss_pred             HHH
Q 026423          191 ACF  193 (238)
Q Consensus       191 ~~~  193 (238)
                      +++
T Consensus       149 ~~~  151 (153)
T 1awc_B          149 AEI  151 (153)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.5e-36  Score=219.81  Aligned_cols=200  Identities=19%  Similarity=0.135  Sum_probs=168.1

Q ss_pred             hhhhhccccCCCCCCCCCCCCCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCc
Q 026423            7 EMTEFGTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRD   86 (238)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~   86 (238)
                      .+++.+.+++...   .....+.++||.|+..|+.+++++|++.|.++ +..+..|.||||+|+..|+.+++++|+ ..+
T Consensus         3 ~ll~~~~~~~~~~---~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll-~~g   77 (229)
T 2vge_A            3 SVLRKAGSPRKAR---RARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLI-TAG   77 (229)
T ss_dssp             -------CCCCCC---CTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH-HTT
T ss_pred             ehhccCCCCcccc---ccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHH-HCC
Confidence            3556666665544   22344567899999999999999999999999 889999999999999999999999999 567


Q ss_pred             cccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccC-CCCCcHHHHH--HHcCCHHHHHHHHHc
Q 026423           87 SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITD-DEGNTPLHNA--VRNKHENVVRMLVKK  163 (238)
Q Consensus        87 ~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~a--~~~~~~~~~~~ll~~  163 (238)
                      .+++.++..|.||||+|+..|+.+++++|+++|+++.            ..+ ..|.||||+|  +..|+.+++++|++.
T Consensus        78 a~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~------------~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~  145 (229)
T 2vge_A           78 ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIF------------ATTLSDGATAFEKCDPYREGYADCATYLADV  145 (229)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT------------CCCSSTTCCTGGGCCTTSTTHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc------------cccCCCCCCHHHHHHHHhcChHHHHHHHHHc
Confidence            8899999999999999999999999999999998765            344 6899999999  999999999999999


Q ss_pred             CCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcc--cccCCCCCCcHHHHHHHhcCcchhHHh
Q 026423          164 DRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPES--LNHRLPEELTLLHSAVMRQNYGEPMIF  228 (238)
Q Consensus       164 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~--~~~~~~~g~t~l~~A~~~~~~~~~~~L  228 (238)
                      |+++ +..+..|.||++.++...   ..++|++.| ++  ++.+|..|+||||+|+..|+.++++..
T Consensus       146 ga~~-~~~~~~~~~~l~~~~~~~---~~~~ll~~g-a~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~  207 (229)
T 2vge_A          146 EQSM-GLMNSGAVYALWDYSAEF---GDELSFREG-ESVTVLRRDGPEETDWWWAALHGQEGYVPRN  207 (229)
T ss_dssp             HHHT-TTSGGGEEEESSCBCCSS---TTBCCBCTT-CEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred             CCCc-ccccCCchHHHHHHhhcc---ccccCcccc-ccccccccCCCcccHHHHHHHcCCcceeehh
Confidence            9988 778888999998654443   336778887 66  788899999999999999999998763

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=100.00  E-value=4.5e-32  Score=186.24  Aligned_cols=151  Identities=19%  Similarity=0.243  Sum_probs=139.6

Q ss_pred             CchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCC
Q 026423           62 GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEG  141 (238)
Q Consensus        62 g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~  141 (238)
                      ..++|+.|+..|+.+++++|++.+ .+.+ .+..|.||||+|+..|+.+++++|+++++++.            ..+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g-~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------~~~~~g   67 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANG-APFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD------------ARTKVD   67 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHT-CCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT------------CCCTTC
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcC-CCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------------CCCCCC
Confidence            468999999999999999999654 4444 57889999999999999999999999987754            578889


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcC
Q 026423          142 NTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQN  221 (238)
Q Consensus       142 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~  221 (238)
                      .||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|+++| ++++.+|..|.||+++|+..|+
T Consensus        68 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~  145 (153)
T 1awc_B           68 RTPLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGN  145 (153)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHcChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCC
Confidence            99999999999999999999999988 788999999999999999999999999998 9999999999999999999999


Q ss_pred             cchhHHh
Q 026423          222 YGEPMIF  228 (238)
Q Consensus       222 ~~~~~~L  228 (238)
                      .+++++|
T Consensus       146 ~~i~~~L  152 (153)
T 1awc_B          146 EDLAEIL  152 (153)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999987

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=100.00  E-value=2.1e-32  Score=192.67  Aligned_cols=163  Identities=23%  Similarity=0.308  Sum_probs=150.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhhhh-ccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCH
Q 026423           31 ELLNVLRRGDEHQISLIAGRMQ-NIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDP  109 (238)
Q Consensus        31 ~l~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~  109 (238)
                      +|+.|+..|+.+++++|++.+. ++ +..+..|.||||+|+..|+.+++++|+ ..+.+++.++..|.||||+|+..++.
T Consensus         8 ~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~   85 (179)
T 3f6q_A            8 DIFTQCREGNAVAVRLWLDNTENDL-NQGDDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRGDDTPLHLAASHGHR   85 (179)
T ss_dssp             CHHHHHHHTCHHHHHHHHHCTTSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHcCCHHHHHHHHhcCcccc-cccCCCCCCHHHHHHHcCcHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHcCCH
Confidence            6999999999999999999854 55 888999999999999999999999999 56788899999999999999999999


Q ss_pred             HHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHH
Q 026423          110 AIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTD  189 (238)
Q Consensus       110 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~  189 (238)
                      +++++|+++|+++.            ..+..|.||||+|+..++.+++++|+++|+++ +..+..|.||+++|+..++.+
T Consensus        86 ~~v~~Ll~~g~~~~------------~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~  152 (179)
T 3f6q_A           86 DIVQKLLQYKADIN------------AVNEHGNVPLHYACFWGQDQVAEDLVANGALV-SICNKYGEMPVDKAKAPLREL  152 (179)
T ss_dssp             HHHHHHHHTTCCTT------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-SBCCTTSCCGGGGSCHHHHHH
T ss_pred             HHHHHHHHcCCCCC------------ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-chhccCCCCcHHHHHHHHHHH
Confidence            99999999997754            67889999999999999999999999999998 789999999999999999999


Q ss_pred             HHHHHHhcCCcccccCCCCC
Q 026423          190 IACFIIDQRPESLNHRLPEE  209 (238)
Q Consensus       190 ~~~~Ll~~~~~~~~~~~~~g  209 (238)
                      ++++|++.| ++++..+..+
T Consensus       153 ~~~~L~~~g-~~~~~~~~~~  171 (179)
T 3f6q_A          153 LRERAEKMG-QNLNRIPYKD  171 (179)
T ss_dssp             HHHHHHHTT-CCCSCBCCCC
T ss_pred             HHHHHHHhh-cCcccCCccc
Confidence            999999999 8887766543

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=2.2e-32  Score=205.11  Aligned_cols=177  Identities=24%  Similarity=0.292  Sum_probs=143.2

Q ss_pred             CCCCCHHHHHHHHc---CCHHHHHHHHhhhhccc------cc----cCCCCchHHHHHHHcCCcchHHHHHHcCcccccc
Q 026423           25 PTTMDHELLNVLRR---GDEHQISLIAGRMQNIF------ST----MSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRK   91 (238)
Q Consensus        25 ~~~~~~~l~~A~~~---~~~~~v~~Ll~~~~~~~------~~----~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~   91 (238)
                      ...+.||||+|+..   |+.+++++|+++|+++.      +.    .+..|.||||+|+..|+.+++++|++ .+.+++.
T Consensus        51 ~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~-~ga~~~~  129 (273)
T 2pnn_A           51 PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE-NGADVQA  129 (273)
T ss_dssp             TTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHH-TTCCTTC
T ss_pred             CcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcCc
Confidence            34566699999987   99999999999997631      22    45689999999999999999999995 5778888


Q ss_pred             CCC--------------CCCcHHHHHHHhCCHHHHHHHHh---hCccccCCCCCCCcccccccCCCCCcHHHHHHHcCC-
Q 026423           92 NNW--------------KGETPLHIAARVGDPAIVSTILK---YAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH-  153 (238)
Q Consensus        92 ~~~--------------~g~~~l~~a~~~~~~~~~~~ll~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~-  153 (238)
                      ++.              .|.||||+|+..|+.+++++|++   +|+++.            .++..|.||||+|+..|+ 
T Consensus       130 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~------------~~d~~g~tpLh~A~~~~~~  197 (273)
T 2pnn_A          130 AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADIS------------ARDSVGNTVLHALVEVADN  197 (273)
T ss_dssp             CBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTT------------CCCTTSCCHHHHHHHHCCS
T ss_pred             cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCce------------eeCCCCCcHHHHHHHccCc
Confidence            886              79999999999999999999999   777654            688899999999999888 


Q ss_pred             --------HHHHHHHHHcCCccc------cccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHH
Q 026423          154 --------ENVVRMLVKKDRIPL------GYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLH  214 (238)
Q Consensus       154 --------~~~~~~ll~~~~~~~------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~  214 (238)
                              .+++++|++.|+++.      +..+..|.||||+|++.|+.+++++|+++|..+.......+.+|.+
T Consensus       198 ~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          198 TVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--------------
T ss_pred             chhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence                    799999999998873      2589999999999999999999999999994477766666666543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=5.7e-32  Score=201.04  Aligned_cols=158  Identities=22%  Similarity=0.249  Sum_probs=141.8

Q ss_pred             CCCHHHHHHHHc---CCHHHHHHHHhhhhccccc-----------cCCCCchHHHHHHHcCCcchHHHHHHcCccccccC
Q 026423           27 TMDHELLNVLRR---GDEHQISLIAGRMQNIFST-----------MSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKN   92 (238)
Q Consensus        27 ~~~~~l~~A~~~---~~~~~v~~Ll~~~~~~~~~-----------~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~   92 (238)
                      .+.+|||+|+..   |+.+++++|++.|.++ +.           .+..|.||||+|+..|+.+++++|++ .+.+++.+
T Consensus        42 ~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~  119 (256)
T 2etb_A           42 TGKTCLMKAVLNLQDGVNACIMPLLQIDKDS-GNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVE-NGADVHLR  119 (256)
T ss_dssp             TTBCHHHHHHHTCBTTBCTTHHHHHHHHHHT-TCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC
T ss_pred             CCCCHHHHHHHccccchHHHHHHHHhcCCcc-cchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcc
Confidence            344589999999   9999999999999987 32           23679999999999999999999995 67778888


Q ss_pred             CCC-------------CCcHHHHHHHhCCHHHHHHHHh---hCccccCCCCCCCcccccccCCCCCcHHHHHHH--cCCH
Q 026423           93 NWK-------------GETPLHIAARVGDPAIVSTILK---YAPAITNGTESEPESLLRITDDEGNTPLHNAVR--NKHE  154 (238)
Q Consensus        93 ~~~-------------g~~~l~~a~~~~~~~~~~~ll~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~--~~~~  154 (238)
                      +..             |.||||+|+..|+.+++++|++   +|+++.            .++..|.||||+|+.  .++.
T Consensus       120 ~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n------------~~d~~g~TpLh~A~~~~~~~~  187 (256)
T 2etb_A          120 ACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLE------------ATDSLGNTVLHALVMIADNSP  187 (256)
T ss_dssp             CCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTT------------CCCTTSCCHHHHHHHHCCSCH
T ss_pred             cccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcC------------ccCCCCCCHHHHHHHcccCCc
Confidence            876             9999999999999999999999   787754            688899999999999  8888


Q ss_pred             H-------HHHHHHHcCCccc------cccCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 026423          155 N-------VVRMLVKKDRIPL------GYLNNAEQTPLSIAIDSSLTDIACFIIDQR  198 (238)
Q Consensus       155 ~-------~~~~ll~~~~~~~------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  198 (238)
                      +       ++++|++.|+++.      +..|..|.||||+|++.|+.+++++|+++|
T Consensus       188 ~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  244 (256)
T 2etb_A          188 ENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE  244 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence            8       9999999998873      578999999999999999999999999998

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.98  E-value=5.1e-32  Score=188.25  Aligned_cols=157  Identities=22%  Similarity=0.323  Sum_probs=142.2

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHh
Q 026423           27 TMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARV  106 (238)
Q Consensus        27 ~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~  106 (238)
                      .+.++|+.|+..|+.+++++|++.+.......+..|.||||+|+..|+.+++++|+ ..+.+++.++..|.||||+|+..
T Consensus         7 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~   85 (165)
T 3twr_A            7 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL-QHGADVHAKDKGGLVPLHNACSY   85 (165)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHH-hcCCCCCccCCCCCCHHHHHHHc
Confidence            45678999999999999999999654333777888999999999999999999999 56778899999999999999999


Q ss_pred             CCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcC
Q 026423          107 GDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSS  186 (238)
Q Consensus       107 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  186 (238)
                      ++.+++++|+++++++.            ..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||+++|+. +
T Consensus        86 ~~~~~v~~Ll~~g~~~~------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~a~~-~  151 (165)
T 3twr_A           86 GHYEVAELLVKHGAVVN------------VADLWKFTPLHEAAAKGKYEICKLLLQHGADP-TKKNRDGNTPLDLVKD-G  151 (165)
T ss_dssp             TCHHHHHHHHHTTCCTT------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTGGGSCT-T
T ss_pred             CcHHHHHHHHhCCCCCC------------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCChhHhHhc-C
Confidence            99999999999997754            57889999999999999999999999999998 7899999999999876 8


Q ss_pred             cHHHHHHHHhcC
Q 026423          187 LTDIACFIIDQR  198 (238)
Q Consensus       187 ~~~~~~~Ll~~~  198 (238)
                      +.+++++|++.|
T Consensus       152 ~~~i~~~L~~~g  163 (165)
T 3twr_A          152 DTDIQDLLRGDA  163 (165)
T ss_dssp             CHHHHHHHHTC-
T ss_pred             ChHHHHHHhhcc
Confidence            999999999887

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.98  E-value=1.6e-31  Score=184.01  Aligned_cols=152  Identities=22%  Similarity=0.363  Sum_probs=139.8

Q ss_pred             CHHHHHHHHcCCHHHHHHHHhh-hhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhC
Q 026423           29 DHELLNVLRRGDEHQISLIAGR-MQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVG  107 (238)
Q Consensus        29 ~~~l~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~  107 (238)
                      .++|+.|+..|+.+++++|++. +.++ +..+..|.||||+ +..|+.+++++|+ ..+.+++.++..|.||||+|+..|
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~-~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVHP-DALNRFGKTALQV-MMFGSTAIALELL-KQGASPNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCT-TCCCTTSCCHHHH-SCTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcCc-cccCCCCCcHHHH-HHcCCHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHHcC
Confidence            4689999999999999999998 2366 8889999999999 9999999999999 567888999999999999999999


Q ss_pred             CHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCc
Q 026423          108 DPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSL  187 (238)
Q Consensus       108 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  187 (238)
                      +.+++++|+++|+++.            ..+..|.||||+|+..|+.+++++|++. +++ +..+..|.||+++|+..|+
T Consensus        80 ~~~~v~~Ll~~g~~~~------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~-~~~~~~g~t~l~~A~~~~~  145 (156)
T 1bd8_A           80 FLDTLKVLVEHGADVN------------VPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL-HRRDARGLTPLELALQRGA  145 (156)
T ss_dssp             CHHHHHHHHHTTCCSC------------CCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCT-TCCCTTSCCHHHHHHHSCC
T ss_pred             cHHHHHHHHHcCCCCC------------CcCCCCCcHHHHHHHhChHHHHHHHHhc-cCC-CCcCCCCCCHHHHHHHcCc
Confidence            9999999999997754            5788999999999999999999999999 666 7889999999999999999


Q ss_pred             HHHHHHHHhc
Q 026423          188 TDIACFIIDQ  197 (238)
Q Consensus       188 ~~~~~~Ll~~  197 (238)
                      .+++++|+++
T Consensus       146 ~~~v~~Ll~~  155 (156)
T 1bd8_A          146 QDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhh
Confidence            9999999974

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.98  E-value=2.3e-33  Score=206.48  Aligned_cols=187  Identities=17%  Similarity=0.116  Sum_probs=132.0

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHh
Q 026423           27 TMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARV  106 (238)
Q Consensus        27 ~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~  106 (238)
                      .+.+||+.|+..|+.+.++.|+++|.++ +. +..|.||||+|+..|+.+++++|+ ..+.+++.++..|.||||+|+..
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~-~~-~~~~~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRV-KF-NPLPLALLLDSSLEGEFDLVQRII-YEVDDPSLPNDEGITALHNAVCA   80 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHT-STTSSCCCCCTTSCCHHHHHHHH
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCc-cc-CchhhHHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHc
Confidence            4566899999999999999999999998 54 477899999999999999999999 56668899999999999999999


Q ss_pred             CCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCC-CHHHHH--H
Q 026423          107 GDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQ-TPLSIA--I  183 (238)
Q Consensus       107 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~-t~l~~a--~  183 (238)
                      |+.+++++|+++|+++.            .++..|.||||+|+..|+.+++++|+++|+++ +..+..|. ||+|+|  +
T Consensus        81 g~~~~v~~Ll~~ga~~~------------~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~t~l~~a~~~  147 (239)
T 1ycs_B           81 GHTEIVKFLVQFGVNVN------------AADSDGWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEM  147 (239)
T ss_dssp             TCHHHHHHHHHHTCCTT------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSS
T ss_pred             CCHHHHHHHHHcCCCCC------------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ceecCCCCcchHHHHHHh
Confidence            99999999999987754            67889999999999999999999999999998 66676666 999999  7


Q ss_pred             HcCcHHHHHHHHhcCCcccccC---------CCCCCcHHHHHHHhcCcchhHHhhhcc
Q 026423          184 DSSLTDIACFIIDQRPESLNHR---------LPEELTLLHSAVMRQNYGEPMIFISLN  232 (238)
Q Consensus       184 ~~~~~~~~~~Ll~~~~~~~~~~---------~~~g~t~l~~A~~~~~~~~~~~L~~~g  232 (238)
                      ..|+.+++++|++.+ ++++..         +..+.++.+++...|.  +++.|.+.+
T Consensus       148 ~~g~~~~~~~Ll~~~-a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~  202 (239)
T 1ycs_B          148 EEGYTQCSQFLYGVQ-EKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHRED  202 (239)
T ss_dssp             STTCCCHHHHHHHHH-HHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCT
T ss_pred             hhccHHHHHHHHHhh-hcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecC
Confidence            889999999999998 777665         5567888888777665  444444443

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.98  E-value=3e-32  Score=200.50  Aligned_cols=163  Identities=18%  Similarity=0.170  Sum_probs=120.6

Q ss_pred             CCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccC
Q 026423           59 SPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITD  138 (238)
Q Consensus        59 ~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~  138 (238)
                      +..|.||||.|+..++.+.++.|+ ..+.+++.. ..|.||||.|+..|+.+++++|++.++++.            ..+
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll-~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~------------~~d   67 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERI-AHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPS------------LPN   67 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCC------------CCC
T ss_pred             CccccccCchhhhhhhHHHHHHHh-ccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCC------------CcC
Confidence            457999999999999999999999 566666654 578999999999999999999999987644            678


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCC-cHHHHH-
Q 026423          139 DEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEEL-TLLHSA-  216 (238)
Q Consensus       139 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~-t~l~~A-  216 (238)
                      ..|.||||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..|+.+++++|+++| ++++.++..|. ||+|+| 
T Consensus        68 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~t~l~~a~  145 (239)
T 1ycs_B           68 DEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESG-AAVFAMTYSDMQTAADKCE  145 (239)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCSSSCCCHHHHCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCcceecCCCCcchHHHHH
Confidence            89999999999999999999999999998 789999999999999999999999999999 99999998887 999999 


Q ss_pred             -HHhcCcchhHHhhhcccccCC
Q 026423          217 -VMRQNYGEPMIFISLNKCLSI  237 (238)
Q Consensus       217 -~~~~~~~~~~~L~~~g~~~~~  237 (238)
                       +..|+.+++++|+++|+++++
T Consensus       146 ~~~~g~~~~~~~Ll~~~a~~~~  167 (239)
T 1ycs_B          146 EMEEGYTQCSQFLYGVQEKMGI  167 (239)
T ss_dssp             SSSTTCCCHHHHHHHHHHHTTT
T ss_pred             HhhhccHHHHHHHHHhhhcccc
Confidence             788999999999999999875

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=2.9e-31  Score=199.15  Aligned_cols=156  Identities=16%  Similarity=0.271  Sum_probs=143.9

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHhhhh-ccccccCCCCchHHHHHH-----HcCCcchHHHHHHcCccccccCCCCCCcHHH
Q 026423           28 MDHELLNVLRRGDEHQISLIAGRMQ-NIFSTMSPRGNTVLHMAI-----RFRNHKVIPEILRRRDSLLRKNNWKGETPLH  101 (238)
Q Consensus        28 ~~~~l~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~g~t~L~~a~-----~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~  101 (238)
                      +.||||+|+..|+.+++++|++.|. ++ +..+..|.||||+|+     ..++.+++++|++ .+...+..+..|.||||
T Consensus       111 g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~-~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~-~g~~~~~~~~~g~tpLh  188 (276)
T 4hbd_A          111 GNTALHYSVSHANFPVVQQLLDSGVCKV-DKQNRAGYSPIMLTALATLKTQDDIETVLQLFR-LGNINAKASQAGQTALM  188 (276)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHH-HSCTTCCCTTTCCCHHH
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHCCCCcC-CCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHH-cCCCccccCCCCCCHHH
Confidence            4459999999999999999999998 77 889999999999999     6688999999994 56777888889999999


Q ss_pred             HHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCccccccCCCCCCHHH
Q 026423          102 IAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK-KDRIPLGYLNNAEQTPLS  180 (238)
Q Consensus       102 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~g~t~l~  180 (238)
                      +|+..|+.+++++|+++|+++.            .++..|.||||+|+..|+.+++++|++ .|+++ +..|..|.||||
T Consensus       189 ~A~~~g~~~~v~~Ll~~gad~n------------~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~-~~~d~~g~TpL~  255 (276)
T 4hbd_A          189 LAVSHGRVDVVKALLACEADVN------------VQDDDGSTALMCACEHGHKEIAGLLLAVPSCDI-SLTDRDGSTALM  255 (276)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTT------------CCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCT-TCCCTTSCCHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCC------------CCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCC-cCcCCCCCCHHH
Confidence            9999999999999999998754            678899999999999999999999999 78887 789999999999


Q ss_pred             HHHHcCcHHHHHHHHhcC
Q 026423          181 IAIDSSLTDIACFIIDQR  198 (238)
Q Consensus       181 ~a~~~~~~~~~~~Ll~~~  198 (238)
                      +|+..|+.+++++|+++.
T Consensus       256 ~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          256 VALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHHTCHHHHHHHHHHC
T ss_pred             HHHHcCCHHHHHHHHhcc
Confidence            999999999999999876

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=1.6e-31  Score=199.07  Aligned_cols=163  Identities=25%  Similarity=0.306  Sum_probs=142.1

Q ss_pred             CCCCHHHHHHH---HcCCHHHHHHHHhhhhccc----------cccCCCCchHHHHHHHcCCcchHHHHHHcCccccccC
Q 026423           26 TTMDHELLNVL---RRGDEHQISLIAGRMQNIF----------STMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKN   92 (238)
Q Consensus        26 ~~~~~~l~~A~---~~~~~~~v~~Ll~~~~~~~----------~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~   92 (238)
                      ..+.+|||+|+   ..|+.+++++|++.|.++.          ...+..|.||||+|+..|+.+++++|++ .+.+++.+
T Consensus        44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~  122 (260)
T 3jxi_A           44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVE-KGADVHAQ  122 (260)
T ss_dssp             TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHH-TTCCTTCC
T ss_pred             CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHh-CCCCcCcc
Confidence            34566999999   7799999999999987631          3334589999999999999999999995 67788888


Q ss_pred             C--------------CCCCcHHHHHHHhCCHHHHHHHHh---hCccccCCCCCCCcccccccCCCCCcHHHHHHHcCC--
Q 026423           93 N--------------WKGETPLHIAARVGDPAIVSTILK---YAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH--  153 (238)
Q Consensus        93 ~--------------~~g~~~l~~a~~~~~~~~~~~ll~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~--  153 (238)
                      +              ..|.||||+|+..|+.+++++|++   +|+++.            .++..|.||||+|+..++  
T Consensus       123 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~------------~~d~~g~TpLh~A~~~~~~~  190 (260)
T 3jxi_A          123 ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLR------------RQDSRGNTVLHALVAIADNT  190 (260)
T ss_dssp             CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTT------------CCCTTSCCHHHHHHHHCCSS
T ss_pred             ccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCc------------ccCCCCCcHHHHHHHhccCc
Confidence            7              689999999999999999999999   777654            688899999999998887  


Q ss_pred             -------HHHHHHHHHcCCccc------cccCCCCCCHHHHHHHcCcHHHHHHHHhcCCccc
Q 026423          154 -------ENVVRMLVKKDRIPL------GYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESL  202 (238)
Q Consensus       154 -------~~~~~~ll~~~~~~~------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~  202 (238)
                             .+++++|++.|+++.      +..+..|.||||+|++.|+.+++++|+++| .+.
T Consensus       191 ~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g-~~~  251 (260)
T 3jxi_A          191 RENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRRE-IAD  251 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH-HHH
T ss_pred             hhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhC-CCc
Confidence                   799999999998873      468999999999999999999999999998 443

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.97  E-value=6.1e-31  Score=176.98  Aligned_cols=134  Identities=13%  Similarity=0.062  Sum_probs=120.6

Q ss_pred             ccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 026423           86 DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDR  165 (238)
Q Consensus        86 ~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~  165 (238)
                      +.+++..+..|.||||+|+..|+.+++++|+++++++.            ..+..|.||||+|+. ++.+++++|++.|+
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~   68 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPN------------ALNRFGRRPIQVMMM-GSAQVAELLLLHGA   68 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTT------------CCCTTCCTTTTTSTT-SCHHHHHHHHHHTC
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcC------------CcCCCCCCHHHHHHc-CCHHHHHHHHHCCC
Confidence            45677888899999999999999999999999887644            577889999999999 99999999999999


Q ss_pred             ccccccCCC-CCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccc
Q 026423          166 IPLGYLNNA-EQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKC  234 (238)
Q Consensus       166 ~~~~~~~~~-g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~  234 (238)
                      ++ +..+.. |.||||+|+..|+.+++++|++.| ++++.+|..|.||||+|+..++.+++++|+++|+|
T Consensus        69 ~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           69 EP-NCADPATLTRPVHDAAREGFLDTLVVLHRAG-ARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             CS-SCCBTTTTBCHHHHHHHHTCHHHHHHHHHTC-CCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            88 778888 999999999999999999999998 99999999999999999999999999999999986

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=5.2e-32  Score=197.71  Aligned_cols=175  Identities=15%  Similarity=0.097  Sum_probs=145.5

Q ss_pred             HHHHHhhhhccc--cccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCcc
Q 026423           44 ISLIAGRMQNIF--STMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA  121 (238)
Q Consensus        44 v~~Ll~~~~~~~--~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~  121 (238)
                      |+.|++.|.++.  +..+.++.||||+|+..|+.+++++|++ .+.+++.++..|.||||+|+..|+.+++++|+++|++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~   79 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVK-EMNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN   79 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHH-HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            467888888772  3345678889999999999999999995 6678899999999999999999999999999999977


Q ss_pred             ccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCcccccc-CCCCCCHHHHH--HHcCcHHHHHHHHhcC
Q 026423          122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYL-NNAEQTPLSIA--IDSSLTDIACFIIDQR  198 (238)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~g~t~l~~a--~~~~~~~~~~~Ll~~~  198 (238)
                      +.            ..+..|.||||+|+..|+.+++++|++.|+++ +.. +..|.||||+|  +..|+.+++++|++.|
T Consensus        80 ~n------------~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~g  146 (229)
T 2vge_A           80 VN------------SPDSHGWTPLHCAASCNDTVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLADVE  146 (229)
T ss_dssp             TT------------CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHH
T ss_pred             CC------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcC
Confidence            54            57889999999999999999999999999998 455 47999999999  9999999999999999


Q ss_pred             CcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccC
Q 026423          199 PESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLS  236 (238)
Q Consensus       199 ~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~  236 (238)
                       ++++.+|..|.+|++.+....   ..++|++.|++++
T Consensus       147 -a~~~~~~~~~~~~l~~~~~~~---~~~~ll~~ga~~~  180 (229)
T 2vge_A          147 -QSMGLMNSGAVYALWDYSAEF---GDELSFREGESVT  180 (229)
T ss_dssp             -HHTTTSGGGEEEESSCBCCSS---TTBCCBCTTCEEE
T ss_pred             -CCcccccCCchHHHHHHhhcc---ccccCcccccccc
Confidence             999999999999998655443   3467888898854

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.96  E-value=8.6e-31  Score=184.96  Aligned_cols=160  Identities=11%  Similarity=0.021  Sum_probs=120.2

Q ss_pred             CchHHHHHHHcCCcchHHHHHHcCccccccCC-CCCCcHHHHHHHhCCH----HHHHHHHhhCccccCCCCCCCcccccc
Q 026423           62 GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNN-WKGETPLHIAARVGDP----AIVSTILKYAPAITNGTESEPESLLRI  136 (238)
Q Consensus        62 g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~~~l~~a~~~~~~----~~~~~ll~~~~~~~~~~~~~~~~~~~~  136 (238)
                      ++++|+.|+..|+.+.++.++....   +..+ ..|+||||+|+..++.    +++++|+++|+++.            .
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~---~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn------------~   70 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY---EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK------------S   70 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS---SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSS------------C
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc---ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCC------------C
Confidence            3456677777777777666664321   2223 4567777777776654    46777777776644            4


Q ss_pred             cCCCCCcHHHHHHHcCC------HHHHHHHHHcCCccccccCCCCC-CHHHHHHHcC-----cHHHHHHHHh-cCCcccc
Q 026423          137 TDDEGNTPLHNAVRNKH------ENVVRMLVKKDRIPLGYLNNAEQ-TPLSIAIDSS-----LTDIACFIID-QRPESLN  203 (238)
Q Consensus       137 ~~~~~~~~l~~a~~~~~------~~~~~~ll~~~~~~~~~~~~~g~-t~l~~a~~~~-----~~~~~~~Ll~-~~~~~~~  203 (238)
                      ++..|+||||+|+..++      .+++++|+++|+++ +..|..|. ||||+|+..+     ..+++++|++ .| ++++
T Consensus        71 ~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~g-ad~~  148 (186)
T 3t8k_A           71 RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG-LQLL  148 (186)
T ss_dssp             CCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTT-CCTT
T ss_pred             CCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcC-CCCc
Confidence            66677777777777665      57889999999988 78888999 9999998844     4568999998 77 9999


Q ss_pred             cCCCCCCcHHHHHHHhcCcchhHHhhhcccccCCC
Q 026423          204 HRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV  238 (238)
Q Consensus       204 ~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~~  238 (238)
                      .+|..|.||||+|+..++.+++++|.+...+++++
T Consensus       149 ~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~  183 (186)
T 3t8k_A          149 IKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLK  183 (186)
T ss_dssp             CCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999888777654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=1.3e-29  Score=174.49  Aligned_cols=144  Identities=13%  Similarity=0.153  Sum_probs=103.6

Q ss_pred             ccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccc
Q 026423           57 TMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI  136 (238)
Q Consensus        57 ~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~  136 (238)
                      ..+..|.||||+|+..|+.+++++|+ ..+.+++.++..|.||||+|+ .|+.+++++|+++|+++.            .
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~------------~   72 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALL-EAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN------------C   72 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHH-TTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC------------C
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCC------------C
Confidence            34667888888888888888888888 457777888888888888875 788888888888876644            5


Q ss_pred             cCCCCCc-HHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHH
Q 026423          137 TDDEGNT-PLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHS  215 (238)
Q Consensus       137 ~~~~~~~-~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~  215 (238)
                      .+..|.| |||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+++| ++++.++..|.||.+-
T Consensus        73 ~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~~~~  150 (156)
T 1bi7_B           73 ADPATLTRPVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAA-GGTRGSNHARIDAAEG  150 (156)
T ss_dssp             CCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             cCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcC-CCCCccCcCcCccccc
Confidence            6777888 888888888888888888888887 678888889999998888899999998888 8888888888888764


Q ss_pred             H
Q 026423          216 A  216 (238)
Q Consensus       216 A  216 (238)
                      +
T Consensus       151 ~  151 (156)
T 1bi7_B          151 P  151 (156)
T ss_dssp             -
T ss_pred             C
Confidence            3

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.96  E-value=1.5e-28  Score=163.00  Aligned_cols=126  Identities=26%  Similarity=0.405  Sum_probs=119.0

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCC
Q 026423           95 KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNA  174 (238)
Q Consensus        95 ~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~  174 (238)
                      +|.||||+|+..|+.+++++|+++++++.            ..+..|.||||+|+..++.+++++|++.|+++ +..+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~------------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~   67 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVN------------AKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKN   67 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTT------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCC------------CcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCC
Confidence            48999999999999999999999987654            57789999999999999999999999999988 788999


Q ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccc
Q 026423          175 EQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKC  234 (238)
Q Consensus       175 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~  234 (238)
                      |.||||+|+..|+.+++++|+++| ++++.+|..|.||+++|+..++.+++++|+++|++
T Consensus        68 g~t~l~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           68 GRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             CCcHHHHHHHcChHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            999999999999999999999998 99999999999999999999999999999999986

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=3.7e-31  Score=205.51  Aligned_cols=183  Identities=13%  Similarity=0.140  Sum_probs=142.6

Q ss_pred             CHHHHHHHHcCCHHHHHHHHhhhhccc--cccCCCCchHHHHHHHcCCcchHHHHHHcCc----cccccCCCCCCcHHHH
Q 026423           29 DHELLNVLRRGDEHQISLIAGRMQNIF--STMSPRGNTVLHMAIRFRNHKVIPEILRRRD----SLLRKNNWKGETPLHI  102 (238)
Q Consensus        29 ~~~l~~A~~~~~~~~v~~Ll~~~~~~~--~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~----~~~~~~~~~g~~~l~~  102 (238)
                      .+|||.|+..|+.++|++|+++|....  ...+..|.||||+|+..|+.+++++|++.++    .+++..+   .||||+
T Consensus        93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~---~TpLh~  169 (376)
T 2aja_A           93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN---YHAFRL  169 (376)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH---HHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC---CCHHHH
Confidence            478999999999999999999987220  1234567899999999999999999996553    2333333   899999


Q ss_pred             HHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHH-HcCCHHHHHHHHHcCCccccccCCCCCCHHHH
Q 026423          103 AARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAV-RNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI  181 (238)
Q Consensus       103 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~-~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~  181 (238)
                      |+..|+.+++++|+++|+++..          +..+..|.||||+|+ ..|+.+++++|++.|+        .|.||+++
T Consensus       170 Aa~~G~~eiv~~Ll~~ga~~~~----------~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~  231 (376)
T 2aja_A          170 AAENGHLHVLNRLCELAPTEAT----------AMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIH  231 (376)
T ss_dssp             HHHTTCHHHHHHHHHSCGGGHH----------HHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHC
T ss_pred             HHHCCCHHHHHHHHHcCCccch----------hccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHH
Confidence            9999999999999999877431          015567899999999 9999999999998663        27899999


Q ss_pred             HHHcCcHHHHHHHHhcCCcccc----------------------------------------------------------
Q 026423          182 AIDSSLTDIACFIIDQRPESLN----------------------------------------------------------  203 (238)
Q Consensus       182 a~~~~~~~~~~~Ll~~~~~~~~----------------------------------------------------------  203 (238)
                      |+..|+.+++++|+++| ++++                                                          
T Consensus       232 Aa~~g~~evv~lL~~~g-a~~~~~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~  310 (376)
T 2aja_A          232 EFEYGEKYVNPFIARHV-NRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALA  310 (376)
T ss_dssp             TTTTTTTTHHHHHHHHH-HHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGS
T ss_pred             HHHCCCHHHHHHHHhcC-cccccccHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhh
Confidence            99999999999998775 3221                                                          


Q ss_pred             ---cCCCCCCcHHHHHHHhcCcchhHHhhhccc
Q 026423          204 ---HRLPEELTLLHSAVMRQNYGEPMIFISLNK  233 (238)
Q Consensus       204 ---~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~  233 (238)
                         .....+.||+++|+..|+.+++++|+++|.
T Consensus       311 ~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~~  343 (376)
T 2aja_A          311 PTATIPGDANELLRLALRLGNQGACALLLSIPS  343 (376)
T ss_dssp             SCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSHH
T ss_pred             ccCCCCCCccHHHHHHHHcCcHHHHHHHHcChH
Confidence               112345678999999999999999998864

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=2.5e-29  Score=169.09  Aligned_cols=131  Identities=15%  Similarity=0.207  Sum_probs=109.2

Q ss_pred             hccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCc
Q 026423           52 QNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPE  131 (238)
Q Consensus        52 ~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~  131 (238)
                      .++ +..+..|.||||+|+..|+.+++++|++ .+.+++.++..|.||||+|+. ++.+++++|+++++++.        
T Consensus         3 ~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~--------   71 (136)
T 1d9s_A            3 PGI-HMLGGSSDAGLATAAARGQVETVRQLLE-AGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPN--------   71 (136)
T ss_dssp             CCC-SCCCCCCSCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSS--------
T ss_pred             CCc-cCCCCCCccHHHHHHHcCCHHHHHHHHH-cCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCC--------
Confidence            455 6677888888888888888888888884 567778888888888888888 88888888888887654        


Q ss_pred             ccccccCCC-CCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 026423          132 SLLRITDDE-GNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQR  198 (238)
Q Consensus       132 ~~~~~~~~~-~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  198 (238)
                          .++.. |.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..++.+++++|+++|
T Consensus        72 ----~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G  134 (136)
T 1d9s_A           72 ----CADPATLTRPVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAAT  134 (136)
T ss_dssp             ----CCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             ----CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence                46667 888888888888888888888888887 678888889999988888889999888877

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=3.5e-29  Score=172.32  Aligned_cols=133  Identities=14%  Similarity=0.052  Sum_probs=117.7

Q ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCcccc
Q 026423           90 RKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG  169 (238)
Q Consensus        90 ~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~  169 (238)
                      ...+..|.||||+|+..|+.+++++|+++|+++.            ..+..|.||||+|+ .|+.+++++|++.|+++ +
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~------------~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~   71 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPN------------APNSYGRRPIQVMM-MGSARVAELLLLHGAEP-N   71 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTT------------CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-C
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCC------------CCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-C
Confidence            4556789999999999999999999999987754            57889999999985 99999999999999988 7


Q ss_pred             ccCCCCCC-HHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCC
Q 026423          170 YLNNAEQT-PLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI  237 (238)
Q Consensus       170 ~~~~~g~t-~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~  237 (238)
                      ..+..|.| |||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..++.+++++|+++|++++.
T Consensus        72 ~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~  139 (156)
T 1bi7_B           72 CADPATLTRPVHDAAREGFLDTLVVLHRAG-ARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRG  139 (156)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHHHT-CCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----
T ss_pred             CcCCCCCcHHHHHHHHCCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCc
Confidence            88999999 999999999999999999998 99999999999999999999999999999999999875

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.96  E-value=1e-29  Score=179.45  Aligned_cols=159  Identities=11%  Similarity=0.014  Sum_probs=138.7

Q ss_pred             HHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCc----chHHHHHHcCccccccCCCCCCcHHHHHHHh
Q 026423           31 ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNH----KVIPEILRRRDSLLRKNNWKGETPLHIAARV  106 (238)
Q Consensus        31 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~----~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~  106 (238)
                      +|+.|++.|+.+.++.++..+.+.  ..+..|.||||+|+..++.    +++++|+ ..+++++.++..|+||||+|+..
T Consensus         9 ~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll-~~Gadvn~~d~~g~TpLh~a~~~   85 (186)
T 3t8k_A            9 TVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLI-NKGADIKSRTKEGTTLFFPLFQG   85 (186)
T ss_dssp             SHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHH-HTTCCSSCCCTTCCCTHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHHc
Confidence            599999999999999999877543  2236799999999999975    4899999 67889999999999999999999


Q ss_pred             CC------HHHHHHHHhhCccccCCCCCCCcccccccCCCCC-cHHHHHHHcCC-----HHHHHHHHH-cCCccccccCC
Q 026423          107 GD------PAIVSTILKYAPAITNGTESEPESLLRITDDEGN-TPLHNAVRNKH-----ENVVRMLVK-KDRIPLGYLNN  173 (238)
Q Consensus       107 ~~------~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~a~~~~~-----~~~~~~ll~-~~~~~~~~~~~  173 (238)
                      ++      .+++++|+++|+++.            .+|..|. ||||+|+..+.     .+++++|++ .|+++ +.+|.
T Consensus        86 ~~~~~~~~~~iv~~Ll~~Gadin------------~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~-~~~d~  152 (186)
T 3t8k_A           86 GGNDITGTTELCKIFLEKGADIT------------ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-LIKDK  152 (186)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCSS------------SCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT-TCCCT
T ss_pred             CCcchhhHHHHHHHHHHCCCCCC------------ccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC-cccCC
Confidence            87      588999999998865            6788999 99999998543     569999999 89998 89999


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCcccccCC
Q 026423          174 AEQTPLSIAIDSSLTDIACFIIDQRPESLNHRL  206 (238)
Q Consensus       174 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  206 (238)
                      .|.||||+|++.|+.+++++|.+.. ...+.++
T Consensus       153 ~G~TpL~~A~~~~~~~~v~~L~~~~-~~~~~~~  184 (186)
T 3t8k_A          153 WGLTALEFVKRCQKPIALKMMEDYI-KKYNLKE  184 (186)
T ss_dssp             TSCCHHHHHHTTTCHHHHHHHHHHH-HHHTCCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHHH-HHHhccc
Confidence            9999999999999999999999876 5566554

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.96  E-value=2e-28  Score=164.61  Aligned_cols=125  Identities=22%  Similarity=0.202  Sum_probs=89.0

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCC
Q 026423           94 WKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNN  173 (238)
Q Consensus        94 ~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~  173 (238)
                      ..+.||||+|+..|+.+++++|+++++++.            ..+..|.||||+|+..++.+++++|++.|+++ +..+.
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~   78 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGADVN------------AKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDA   78 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCCTT------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCCCC------------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCC
Confidence            345667777777777777777777665533            45666777777777777777777777777666 56667


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcc
Q 026423          174 AEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN  232 (238)
Q Consensus       174 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g  232 (238)
                      .|.||||+|+..|+.+++++|+++| ++++.+|..|.|||++|+..++.+++++|+++|
T Consensus        79 ~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           79 IGFTPLHLAAFIGHLEIAEVLLKHG-ADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcC-CCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            7777777777777777777777776 777777777777777777777777777777765

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=1.7e-30  Score=201.83  Aligned_cols=179  Identities=11%  Similarity=0.018  Sum_probs=145.1

Q ss_pred             HHHHHHH-cCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccc--cccCCCCCCcHHHHHHHhC
Q 026423           31 ELLNVLR-RGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSL--LRKNNWKGETPLHIAARVG  107 (238)
Q Consensus        31 ~l~~A~~-~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~--~~~~~~~g~~~l~~a~~~~  107 (238)
                      ++++|.. .++.+.+++++++|.+.        .||||+|+..|+.+++++|++.+...  .+..+..|.||||+|+..|
T Consensus        68 ~~~~a~~~~~~~~~~~~l~~~g~~~--------~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G  139 (376)
T 2aja_A           68 CLYYAHYNRNAKQLWSDAHKKGIKS--------EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENG  139 (376)
T ss_dssp             HHHHHHTTTTCTTHHHHHHHHTCCH--------HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTT
T ss_pred             HHHHHHhcCCCHHHHHHHHHcCCCc--------CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcC
Confidence            4666665 57888999999887765        59999999999999999999544311  1123446788999999999


Q ss_pred             CHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccc--cCCCCCCHHHHHH-H
Q 026423          108 DPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGY--LNNAEQTPLSIAI-D  184 (238)
Q Consensus       108 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~--~~~~g~t~l~~a~-~  184 (238)
                      +.+++++|+++|++...         .+..+.. .||||+|+..|+.+++++|+++|+++ ..  .+..|.||||+|+ .
T Consensus       140 ~~eiv~~Ll~~gad~~~---------~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~  208 (376)
T 2aja_A          140 HLHVLNRLCELAPTEIM---------AMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAVG  208 (376)
T ss_dssp             CHHHHHHHHHSCTTTHH---------HHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHhCCCCccc---------cccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHHH
Confidence            99999999999963110         0011222 89999999999999999999999986 34  6788999999999 9


Q ss_pred             cCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccC
Q 026423          185 SSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLS  236 (238)
Q Consensus       185 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~  236 (238)
                      .|+.+++++|++.| ++       |.||+++|+..|+.+++++|+++|++++
T Consensus       209 ~G~~eiv~~Ll~~g-a~-------~~taL~~Aa~~g~~evv~lL~~~ga~~~  252 (376)
T 2aja_A          209 RGHHNVINFLLDCP-VM-------LAYAEIHEFEYGEKYVNPFIARHVNRLK  252 (376)
T ss_dssp             TCCHHHHHHHTTSH-HH-------HHHHHHCTTTTTTTTHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhCC-Cc-------cchHHHHHHHCCCHHHHHHHHhcCcccc
Confidence            99999999999966 32       7899999999999999999999998763

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.95  E-value=1.9e-27  Score=159.81  Aligned_cols=126  Identities=22%  Similarity=0.241  Sum_probs=79.1

Q ss_pred             CCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccC
Q 026423           59 SPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITD  138 (238)
Q Consensus        59 ~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~  138 (238)
                      ...+.||||+|+..|+.+++++|++ .+.+++.++..|.||||+|+..++.+++++|+++++++.            ..+
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------~~d   77 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMA-NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN------------AVD   77 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT------------CCC
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------------cCC
Confidence            3445666666666666666666663 445556666666666666666666666666666665433            355


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 026423          139 DEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQR  198 (238)
Q Consensus       139 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  198 (238)
                      ..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++.|
T Consensus        78 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           78 AIGFTPLHLAAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            56666666666666666666666666665 556666666666666666666666666543

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.95  E-value=5.3e-27  Score=155.46  Aligned_cols=123  Identities=29%  Similarity=0.470  Sum_probs=82.7

Q ss_pred             CchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCC
Q 026423           62 GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEG  141 (238)
Q Consensus        62 g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~  141 (238)
                      |.||||+|+..|+.+++++|++ .+.+++..+..|.||||+|+..++.+++++|+++++++.            ..+..|
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~------------~~~~~g   68 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN------------AKDKNG   68 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT------------CCCTTS
T ss_pred             CccHHHHHHHcCcHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc------------ccCCCC
Confidence            5666666666666666666663 445556666666777777777777777777776665533            455666


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 026423          142 NTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQR  198 (238)
Q Consensus       142 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  198 (238)
                      .||||+|+..++.+++++|++.|+++ +..+..|.||+++|+..|+.+++++|+++|
T Consensus        69 ~t~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  124 (126)
T 1n0r_A           69 RTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAG  124 (126)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             CcHHHHHHHcChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            77777777777777777777776666 566667777777777777777777777666

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.95  E-value=8.5e-28  Score=161.79  Aligned_cols=129  Identities=24%  Similarity=0.246  Sum_probs=87.9

Q ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccc
Q 026423           91 KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGY  170 (238)
Q Consensus        91 ~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~  170 (238)
                      .++..|.||||+|+..|+.+++++|+++++++.            ..+..|.||||+|+..|+.+++++|++.|+++ +.
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~------------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~   71 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPN------------VKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NT   71 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------------cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cC
Confidence            455667777777777777777777777665533            45666777777777777777777777777666 56


Q ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhccc
Q 026423          171 LNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNK  233 (238)
Q Consensus       171 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~  233 (238)
                      .+..|.||||+|+..|+.+++++|++.| ++++.+|..|.||+++|+..+..+++++|.+.+.
T Consensus        72 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           72 TGYQNDSPLHDAAKNGHVDIVKLLLSYG-ASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             CCGGGCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            6677777777777777777777777776 7777777777777777777777777766665543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.94  E-value=1.6e-26  Score=163.11  Aligned_cols=140  Identities=18%  Similarity=0.100  Sum_probs=114.9

Q ss_pred             CCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccC
Q 026423           59 SPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITD  138 (238)
Q Consensus        59 ~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~  138 (238)
                      +..|.||||+|+..|+.+++++|++  +.+++.++..|.||||+|+..|+.+++++|+++|+++.            ..+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~------------~~~  106 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD------------HRD  106 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT------------CCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------------cCC
Confidence            4567889999999999999998885  67788888889999999999999999999998887754            344


Q ss_pred             -CCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHH
Q 026423          139 -DEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAV  217 (238)
Q Consensus       139 -~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~  217 (238)
                       ..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|++.++.                  ..+.+++++|+
T Consensus       107 ~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~  167 (183)
T 3deo_A          107 MRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKT------------------TPKGNPMQFGR  167 (183)
T ss_dssp             SSSSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHH
T ss_pred             CCCCCCHHHHHHhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccC------------------cccccHHHHHH
Confidence             77889999999999999999999888887 67888899999988764321                  24568999999


Q ss_pred             HhcCcchhHHhhhc
Q 026423          218 MRQNYGEPMIFISL  231 (238)
Q Consensus       218 ~~~~~~~~~~L~~~  231 (238)
                      ..|..+++++|.++
T Consensus       168 ~~~~~~i~~~L~~~  181 (183)
T 3deo_A          168 RIGLEKVINVLEGQ  181 (183)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HcCHHHHHHHHHHh
Confidence            99999998888765

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.94  E-value=9.5e-27  Score=171.55  Aligned_cols=141  Identities=17%  Similarity=0.080  Sum_probs=96.5

Q ss_pred             CCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccC-
Q 026423           60 PRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITD-  138 (238)
Q Consensus        60 ~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-  138 (238)
                      ..|.||||+|+..|+.+++++|++  +.+++.++..|.||||+|+..|+.+++++|+++|+++.            ..+ 
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~------------~~~~  108 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD------------HRDM  108 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT------------CCCS
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC------------cCCC
Confidence            456777777777777777777774  55667777777777777777777777777777776643            234 


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHH
Q 026423          139 DEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVM  218 (238)
Q Consensus       139 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~  218 (238)
                      ..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..+.                  ...+.|||++|+.
T Consensus       109 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~------------------~~~~~~~l~~a~~  169 (244)
T 3ui2_A          109 RGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK------------------TTPKGNPMQFGRR  169 (244)
T ss_dssp             SSCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT------------------TCCCSSHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh------------------ccCCCCHHHHHHH
Confidence            56777777777777777777777777766 5667777777777764211                  1345677777777


Q ss_pred             hcCcchhHHhhhccc
Q 026423          219 RQNYGEPMIFISLNK  233 (238)
Q Consensus       219 ~~~~~~~~~L~~~g~  233 (238)
                      .|+.+++++|++++.
T Consensus       170 ~g~~~iv~~L~~~~~  184 (244)
T 3ui2_A          170 IGLEKVINVLEGQVF  184 (244)
T ss_dssp             HHHHHHHHHHHHHHE
T ss_pred             cChHHHHHHHHHhcc
Confidence            777777777776543

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.94  E-value=5.9e-27  Score=157.64  Aligned_cols=128  Identities=23%  Similarity=0.326  Sum_probs=106.7

Q ss_pred             ccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccc
Q 026423           57 TMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI  136 (238)
Q Consensus        57 ~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~  136 (238)
                      ..+..|.||||+|+..|+.+++++|+ ..+.+++.++..|.||||+|+..++.+++++|+++++++.            .
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~------------~   71 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLL-QNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN------------T   71 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHH-HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------------C
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccc------------C
Confidence            45778899999999999999999998 4667788888889999999999999999999998887644            5


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 026423          137 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQR  198 (238)
Q Consensus       137 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  198 (238)
                      .+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||+++|+..+..+++++|.+.+
T Consensus        72 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           72 TGYQNDSPLHDAAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             CCGGGCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence            6778899999999999999999999998887 788899999999998888888877776554

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.93  E-value=4.5e-26  Score=172.63  Aligned_cols=143  Identities=20%  Similarity=0.215  Sum_probs=117.7

Q ss_pred             CCCCchHHHHHHHcCCcchHHHHHHcCcccccc------CCCCCCcHHHHHHHh---CCHHHHHHHHhhCccccCCCCCC
Q 026423           59 SPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRK------NNWKGETPLHIAARV---GDPAIVSTILKYAPAITNGTESE  129 (238)
Q Consensus        59 ~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~------~~~~g~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~  129 (238)
                      .....++|+.|+..|+.+.++.|+ ..+.+++.      .+..|.||||+|+..   ++.+++++|+++|+++.      
T Consensus       148 ~~~~~~~L~~A~~~g~~~~v~~ll-~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn------  220 (301)
T 2b0o_E          148 CTPEPQRLWTAICNRDLLSVLEAF-ANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD------  220 (301)
T ss_dssp             CC-CHHHHHHHHHTTCHHHHHHHH-HTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTT------
T ss_pred             cCchHHHHhhhhhccCHHHHHHHH-hcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCC------
Confidence            445678999999999999999999 45556665      588899999999987   88999999999997754      


Q ss_pred             CcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCC
Q 026423          130 PESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEE  209 (238)
Q Consensus       130 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g  209 (238)
                            ..+..|.||||+|+..|+.+++++|++.|+++ +..|..|.|||++|+..|+.+++++|++.| ++      .|
T Consensus       221 ------~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~g-a~------~g  286 (301)
T 2b0o_E          221 ------AKAADGNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQ-AG------TF  286 (301)
T ss_dssp             ------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHH-HH------TT
T ss_pred             ------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhc-CC------CC
Confidence                  57889999999999999999999999999988 788999999999999999999999999988 55      47


Q ss_pred             CcHHHHHHHhcCc
Q 026423          210 LTLLHSAVMRQNY  222 (238)
Q Consensus       210 ~t~l~~A~~~~~~  222 (238)
                      .||||+|+..|+.
T Consensus       287 ~tpLh~A~~~g~~  299 (301)
T 2b0o_E          287 AFPLHVDYSWVIS  299 (301)
T ss_dssp             SSCCC--------
T ss_pred             CChhHHHHhcCCc
Confidence            8999999988763

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.93  E-value=1.3e-26  Score=168.53  Aligned_cols=129  Identities=19%  Similarity=0.148  Sum_probs=74.1

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCccccccC
Q 026423           94 WKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK-DRIPLGYLN  172 (238)
Q Consensus        94 ~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~  172 (238)
                      ..|.||||+|+..|+.+++++|++.++++.            ..+..|.||||+|+..|+.+++++|++. |+++ +..+
T Consensus        71 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d  137 (222)
T 3ehr_A           71 ESIDNPLHEAAKRGNLSWLRECLDNRVGVN------------GLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQN  137 (222)
T ss_dssp             EEESCHHHHHHHHTCHHHHHHHHHTTCCTT------------CCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCC
T ss_pred             cccccccccccccCcHHHHHHHHhCCCCcc------------ccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccC
Confidence            345566666666666666666666554432            3455666666666666666666666665 5544 5566


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccC
Q 026423          173 NAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLS  236 (238)
Q Consensus       173 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~  236 (238)
                      ..|.||||+|+..|+.+++++|++.| ++++.+|..|.|||++|+..++.++++.|++.|+..+
T Consensus       138 ~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~  200 (222)
T 3ehr_A          138 KLGDTALHAAAWKGYADIVQLLLAKG-ARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT  200 (222)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHHT-CCSCCCCTTSCCHHHHCCSHHHHHHHC----------
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhh
Confidence            66666666666666666666666665 6666666666666666666666666666666665544

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.93  E-value=1.4e-25  Score=158.33  Aligned_cols=138  Identities=19%  Similarity=0.299  Sum_probs=123.5

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCC-CCCCcHHHHHHH
Q 026423           27 TMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNN-WKGETPLHIAAR  105 (238)
Q Consensus        27 ~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~~~l~~a~~  105 (238)
                      .+.+|||.|+..|+.++++.|++ |.++ +..+..|.||||+|+..|+.+++++|+ ..+.+++.++ ..|.||||+|+.
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLA-EAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCcCCCCCCCCHHHHHHh
Confidence            45679999999999999999999 9998 889999999999999999999999999 5677788777 889999999999


Q ss_pred             hCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHc
Q 026423          106 VGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDS  185 (238)
Q Consensus       106 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~  185 (238)
                      .|+.+++++|+++|+++.            .++..|.||||+|++.++                  ...+.+++++|++.
T Consensus       120 ~~~~~~v~~Ll~~ga~~~------------~~d~~g~tpl~~A~~~~~------------------~~~~~~~l~~a~~~  169 (183)
T 3deo_A          120 YVRPEVVEALVELGADIE------------VEDERGLTALELAREILK------------------TTPKGNPMQFGRRI  169 (183)
T ss_dssp             TTCHHHHHHHHHHTCCTT------------CCCTTSCCHHHHHHHHHH------------------TCCCCSHHHHHHHH
T ss_pred             cCcHHHHHHHHHcCCCCc------------CCCCCCCCHHHHHHHhcc------------------CcccccHHHHHHHc
Confidence            999999999999997754            688899999999987431                  24567999999999


Q ss_pred             CcHHHHHHHHhc
Q 026423          186 SLTDIACFIIDQ  197 (238)
Q Consensus       186 ~~~~~~~~Ll~~  197 (238)
                      |+.+++++|.++
T Consensus       170 ~~~~i~~~L~~~  181 (183)
T 3deo_A          170 GLEKVINVLEGQ  181 (183)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHh
Confidence            999999999865

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.93  E-value=5.9e-26  Score=149.88  Aligned_cols=111  Identities=17%  Similarity=0.173  Sum_probs=79.9

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCC
Q 026423           94 WKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNN  173 (238)
Q Consensus        94 ~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~  173 (238)
                      ..|.||||+|+..|+.+++++|++.++++.            ..+..|.||||+|+..++.+++++|++.|+++ +..+.
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~   71 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVN------------RTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDK   71 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCTT------------SCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCT
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcC------------ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCC
Confidence            456677777777777777777777765533            45667777777777777777777777777766 56777


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHH
Q 026423          174 AEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVM  218 (238)
Q Consensus       174 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~  218 (238)
                      .|+||||+|+..|+.+++++|+++| ++++.+|..|.||+++|..
T Consensus        72 ~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           72 HHITPLLSAVYEGHVSCVKLLLSKG-ADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHCCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHhCC
Confidence            7777777777777777777777776 7777777777777777743

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.93  E-value=1.1e-25  Score=170.52  Aligned_cols=133  Identities=13%  Similarity=-0.008  Sum_probs=117.5

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHc---CCHHHHHHHHHcCCcccccc
Q 026423           95 KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRN---KHENVVRMLVKKDRIPLGYL  171 (238)
Q Consensus        95 ~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~  171 (238)
                      ...++|+.|+..|+.+.++.|+..++++.....      ....+..|.||||+|+..   ++.+++++|++.|+++ +..
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~------~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~  222 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLP------GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAK  222 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEE------CSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCC
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCcccccCC------CcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCC
Confidence            345789999999999999999999988654210      002467899999999997   8999999999999988 788


Q ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhccccc
Q 026423          172 NNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCL  235 (238)
Q Consensus       172 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~  235 (238)
                      |..|.||||+|+..|+.+++++|++.| ++++.+|..|.|||++|+..++.+++++|+++|++.
T Consensus       223 d~~G~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~~  285 (301)
T 2b0o_E          223 AADGNTALHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIARKKHHKECEELLEQAQAGT  285 (301)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTT-CCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC
Confidence            999999999999999999999999998 999999999999999999999999999999999864

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.93  E-value=1.6e-25  Score=164.96  Aligned_cols=139  Identities=19%  Similarity=0.286  Sum_probs=124.7

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCC-CCCCcHHHHHHH
Q 026423           27 TMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNN-WKGETPLHIAAR  105 (238)
Q Consensus        27 ~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~~~l~~a~~  105 (238)
                      .+.+|||.|+..|+.+++++|++ |.++ +..+..|.||||+|+..|+.+++++|+ ..+.+++.++ ..|.||||+|+.
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLA-EAGADLDHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHH-HTTCCTTCCCSSSCCCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHH-HcCCCCCcCCCCCCCCHHHHHHH
Confidence            45679999999999999999999 9998 889999999999999999999999999 5677787777 789999999999


Q ss_pred             hCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHc
Q 026423          106 VGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDS  185 (238)
Q Consensus       106 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~  185 (238)
                      .|+.+++++|+++|+++.            ..+..|.||||+|+..+                  ....+.||+++|+..
T Consensus       121 ~g~~~~v~~Ll~~ga~~~------------~~d~~g~t~l~~A~~~~------------------~~~~~~~~l~~a~~~  170 (244)
T 3ui2_A          121 YVRPEVVEALVELGADIE------------VEDERGLTALELAREIL------------------KTTPKGNPMQFGRRI  170 (244)
T ss_dssp             TTCHHHHHHHHHTTCCTT------------CCCTTCCCHHHHHHHHH------------------TTCCCSSHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCC------------CCCCCCCcHHHHHHHHH------------------hccCCCCHHHHHHHc
Confidence            999999999999998754            68889999999998522                  235688999999999


Q ss_pred             CcHHHHHHHHhcC
Q 026423          186 SLTDIACFIIDQR  198 (238)
Q Consensus       186 ~~~~~~~~Ll~~~  198 (238)
                      |+.+++++|++.+
T Consensus       171 g~~~iv~~L~~~~  183 (244)
T 3ui2_A          171 GLEKVINVLEGQV  183 (244)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHhc
Confidence            9999999999863

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.92  E-value=5.9e-26  Score=165.07  Aligned_cols=137  Identities=18%  Similarity=0.165  Sum_probs=110.0

Q ss_pred             cCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhh-CccccCCCCCCCcccccc
Q 026423           58 MSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKY-APAITNGTESEPESLLRI  136 (238)
Q Consensus        58 ~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~~~~  136 (238)
                      .+..|.||||+|+..|+.+++++|+ ..+.+++.++..|.||||+|+..|+.+++++|++. ++++.            .
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~------------~  135 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECL-DNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELN------------Q  135 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCC------------C
T ss_pred             cccccccccccccccCcHHHHHHHH-hCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcc------------c
Confidence            3556889999999999999999999 46778889999999999999999999999999998 76643            6


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCC
Q 026423          137 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEE  209 (238)
Q Consensus       137 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g  209 (238)
                      .+..|.||||+|+..|+.+++++|++.|+++ +..+..|.|||++|+..+..++++.|+..+ +..+..+..+
T Consensus       136 ~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~-~~~~~~~~~~  206 (222)
T 3ehr_A          136 QNKLGDTALHAAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTD-AVRTLSNAED  206 (222)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhccc-hhhhccchhh
Confidence            7889999999999999999999999999988 788999999999999999999999999988 7766666544

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.92  E-value=3.3e-25  Score=166.10  Aligned_cols=132  Identities=15%  Similarity=0.038  Sum_probs=119.1

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHc---CCHHHHHHHHHcCCccccccC
Q 026423           96 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRN---KHENVVRMLVKKDRIPLGYLN  172 (238)
Q Consensus        96 g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~  172 (238)
                      ..++|+.|+..++.+.++.++..|.+....      ..++..+..|.||||+|+..   ++.+++++|+++|+++ +..|
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~------~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d  202 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEK------IPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQT  202 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSB------CCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCC
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhh------ccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccC
Confidence            346899999999999999999998765321      11445678899999999999   8999999999999998 7899


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhccccc
Q 026423          173 NAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCL  235 (238)
Q Consensus       173 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~  235 (238)
                      ..|.||||+|+..|+.+++++|++.| ++++.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus       203 ~~g~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          203 GKGSTALHYCCLTDNAECLKLLLRGK-ASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            99999999999999999999999998 999999999999999999999999999999999863

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.92  E-value=3e-25  Score=146.45  Aligned_cols=111  Identities=20%  Similarity=0.229  Sum_probs=72.0

Q ss_pred             CCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccC
Q 026423           59 SPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITD  138 (238)
Q Consensus        59 ~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~  138 (238)
                      +..|.||||+|+..|+.+++++|++ .+.+++.++..|.||||+|+..++.+++++|+++++++.            .++
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------~~d   70 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVA-KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN------------APD   70 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT------------CCC
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHH-cCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC------------cCC
Confidence            3456666777776666677766663 445566666666777777777777777777776665533            456


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHH
Q 026423          139 DEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAI  183 (238)
Q Consensus       139 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~  183 (238)
                      ..|.||||+|+..++.+++++|++.|+++ +..+..|.||+++|.
T Consensus        71 ~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           71 KHHITPLLSAVYEGHVSCVKLLLSKGADK-TVKGPDGLTAFEATD  114 (123)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHhC
Confidence            66677777777777777777777776665 566667777777663

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.92  E-value=1.6e-24  Score=135.85  Aligned_cols=93  Identities=23%  Similarity=0.325  Sum_probs=88.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHh
Q 026423          140 EGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMR  219 (238)
Q Consensus       140 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~  219 (238)
                      +|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++.| ++++.+|..|+||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHc
Confidence            4789999999999999999999999988 789999999999999999999999999999 99999999999999999999


Q ss_pred             cCcchhHHhhhcccc
Q 026423          220 QNYGEPMIFISLNKC  234 (238)
Q Consensus       220 ~~~~~~~~L~~~g~~  234 (238)
                      ++.+++++|+++|++
T Consensus        79 ~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           79 GHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TCHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHcCCC
Confidence            999999999999985

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.91  E-value=6.1e-24  Score=164.49  Aligned_cols=163  Identities=17%  Similarity=0.182  Sum_probs=108.4

Q ss_pred             CCCchHHHHHHHc-CCcchHHHHHHcCccccccCC--CCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccc
Q 026423           60 PRGNTVLHMAIRF-RNHKVIPEILRRRDSLLRKNN--WKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI  136 (238)
Q Consensus        60 ~~g~t~L~~a~~~-~~~~~~~~Ll~~~~~~~~~~~--~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~  136 (238)
                      ..+.|+||+|+.. ++.+++++|+ ..+.+++..+  ..|.||||+|+..|+.+++++|+++|+++.            .
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL-~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn------------~  263 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADAL-AHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN------------Q  263 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHH-HTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT------------C
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHH-HcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCC------------C
Confidence            3456799999998 9999999999 5667777777  788999999999999999999999887754            5


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCC--cccccCCCCCCcHHH
Q 026423          137 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRP--ESLNHRLPEELTLLH  214 (238)
Q Consensus       137 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~--~~~~~~~~~g~t~l~  214 (238)
                      .+..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+..+.  .+....+..+.|+++
T Consensus       264 ~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~  342 (368)
T 3jue_A          264 ADSAGRGPLHHATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLD  342 (368)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------
T ss_pred             CCCCCCCHHHHHHHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHH
Confidence            7788999999999999999999999999888 7888899999999999999999999987652  223344556778888


Q ss_pred             HHHHhcC--cchhHHhhhcccccC
Q 026423          215 SAVMRQN--YGEPMIFISLNKCLS  236 (238)
Q Consensus       215 ~A~~~~~--~~~~~~L~~~g~~~~  236 (238)
                      ++.....  .+-.+.|...+.+++
T Consensus       343 i~~~~~~~~~~~~ekl~r~~~~~~  366 (368)
T 3jue_A          343 IFRDFSLMASDDPEKLSRRSHDLH  366 (368)
T ss_dssp             ------------------------
T ss_pred             HHHHHHhhcCCCHHHHHhcCCCcC
Confidence            7766543  344566666666554

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.90  E-value=2.1e-23  Score=161.45  Aligned_cols=127  Identities=17%  Similarity=0.138  Sum_probs=117.2

Q ss_pred             CCCCcHHHHHHHh-CCHHHHHHHHhhCccccCCCCCCCcccccccC--CCCCcHHHHHHHcCCHHHHHHHHHcCCccccc
Q 026423           94 WKGETPLHIAARV-GDPAIVSTILKYAPAITNGTESEPESLLRITD--DEGNTPLHNAVRNKHENVVRMLVKKDRIPLGY  170 (238)
Q Consensus        94 ~~g~~~l~~a~~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~  170 (238)
                      ..+.++||.|+.. ++.++++.|+++|+++.            ..+  ..|.||||+|+..|+.+++++|+++|+++ +.
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn------------~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~  263 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADVN------------WVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQ  263 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTT------------CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TC
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCCC------------ccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CC
Confidence            3456799999999 99999999999998765            344  78999999999999999999999999998 78


Q ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccc
Q 026423          171 LNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKC  234 (238)
Q Consensus       171 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~  234 (238)
                      .|..|.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..++.+++++|++.|..
T Consensus       264 ~d~~G~TpLh~A~~~g~~~~v~~LL~~G-ad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          264 ADSAGRGPLHHATILGHTGLACLFLKRG-ADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred             CCCCCCCHHHHHHHcCcHHHHHHHHHCc-CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            9999999999999999999999999999 99999999999999999999999999999988743

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.89  E-value=1.5e-22  Score=151.71  Aligned_cols=147  Identities=18%  Similarity=0.187  Sum_probs=113.3

Q ss_pred             CHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccc-----cccCCCCCCcHHHHHHHh---CCHHH
Q 026423           40 DEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSL-----LRKNNWKGETPLHIAARV---GDPAI  111 (238)
Q Consensus        40 ~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~-----~~~~~~~g~~~l~~a~~~---~~~~~  111 (238)
                      ++-..+++................++|+.|+..++.+.+..++..+...     ++..+..|.||||+|+..   ++.++
T Consensus       108 ~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~  187 (278)
T 1dcq_A          108 DYITAKYMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHI  187 (278)
T ss_dssp             HHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHH
T ss_pred             HHHHHHHHHhhcccccccccchhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHH
Confidence            3334445544433332444445678888888888888888888543332     444577889999999988   88899


Q ss_pred             HHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHH
Q 026423          112 VSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA  191 (238)
Q Consensus       112 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  191 (238)
                      +++|+++|++++            .++..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++
T Consensus       188 v~~Ll~~ga~in------------~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v  254 (278)
T 1dcq_A          188 VDFLVQNSGNLD------------KQTGKGSTALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCE  254 (278)
T ss_dssp             HHHHHHHCSCTT------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHCCCCcc------------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHH
Confidence            999999887754            57788999999999999999999999998887 78888999999999999999999


Q ss_pred             HHHHhcCC
Q 026423          192 CFIIDQRP  199 (238)
Q Consensus       192 ~~Ll~~~~  199 (238)
                      ++|++.|.
T Consensus       255 ~~Ll~~ga  262 (278)
T 1dcq_A          255 ELLTQALS  262 (278)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHcCC
Confidence            99998873

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.89  E-value=2.3e-22  Score=125.89  Aligned_cols=91  Identities=31%  Similarity=0.521  Sum_probs=84.5

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCC
Q 026423           95 KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNA  174 (238)
Q Consensus        95 ~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~  174 (238)
                      +|+||||+|+..|+.+++++|+++|+++.            .++..|.||||+|+..|+.+++++|++.|+++ +..+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n------------~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~   67 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVN------------AKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKN   67 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTT------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCc------------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCC
Confidence            47899999999999999999999997754            67889999999999999999999999999998 788999


Q ss_pred             CCCHHHHHHHcCcHHHHHHHHhcC
Q 026423          175 EQTPLSIAIDSSLTDIACFIIDQR  198 (238)
Q Consensus       175 g~t~l~~a~~~~~~~~~~~Ll~~~  198 (238)
                      |.||||+|+..|+.+++++|++.|
T Consensus        68 g~t~l~~A~~~~~~~~~~~Ll~~g   91 (93)
T 1n0q_A           68 GRTPLHLAARNGHLEVVKLLLEAG   91 (93)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC
Confidence            999999999999999999999988

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.88  E-value=7.7e-23  Score=133.23  Aligned_cols=109  Identities=26%  Similarity=0.338  Sum_probs=82.9

Q ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccc
Q 026423           91 KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGY  170 (238)
Q Consensus        91 ~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~  170 (238)
                      .+|..|.||||+|+..++.+++++|+++++++.            ..+..|.||||+|+..++.+++++|++.|+++ +.
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~------------~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~   70 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN------------ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NA   70 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSS------------CCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------------CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cc
Confidence            456677888888888888888888887776543            46677888888888888888888888887776 67


Q ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHH
Q 026423          171 LNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLL  213 (238)
Q Consensus       171 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l  213 (238)
                      .+..|.||||+|+..++.+++++|+++| ++++.++..|.+|-
T Consensus        71 ~d~~g~tpl~~A~~~~~~~~~~~Ll~~g-a~~n~~~~~~~~~~  112 (115)
T 2l6b_A           71 RSKDGNTPEHLAKKNGHHEIVKLLDAKG-ADVNARSWGSSHHH  112 (115)
T ss_dssp             CCTTCCCTTHHHHTTTCHHHHHHHHTTS-SSHHHHSCCCC---
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCcCCccccccc
Confidence            7778888888888888888888888877 88888877777764

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.88  E-value=4.9e-23  Score=134.15  Aligned_cols=100  Identities=23%  Similarity=0.271  Sum_probs=95.4

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHH
Q 026423          136 ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHS  215 (238)
Q Consensus       136 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~  215 (238)
                      .++..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..++.+++++|++.| ++++.+|..|.|||++
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKG-ADVNARSKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTT-CCTTCCCTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCCCHHHH
Confidence            47889999999999999999999999999987 788999999999999999999999999998 9999999999999999


Q ss_pred             HHHhcCcchhHHhhhcccccCC
Q 026423          216 AVMRQNYGEPMIFISLNKCLSI  237 (238)
Q Consensus       216 A~~~~~~~~~~~L~~~g~~~~~  237 (238)
                      |+..++.+++++|+++|++++.
T Consensus        82 A~~~~~~~~~~~Ll~~ga~~n~  103 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKGADVNA  103 (115)
T ss_dssp             HHTTTCHHHHHHHHTTSSSHHH
T ss_pred             HHHCCCHHHHHHHHHcCCCCCc
Confidence            9999999999999999999863

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.83  E-value=2.5e-20  Score=120.20  Aligned_cols=94  Identities=14%  Similarity=0.129  Sum_probs=84.9

Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcH
Q 026423          133 LLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTL  212 (238)
Q Consensus       133 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  212 (238)
                      .....+..|.|+||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|+++| ++++.+|..|+||
T Consensus        16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tp   93 (110)
T 2zgd_A           16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAG-ADVXAQDKFGKTA   93 (110)
T ss_dssp             ------CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCH
T ss_pred             cccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccccCCCcH
Confidence            34457789999999999999999999999999988 788999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHhcCcchhHHh
Q 026423          213 LHSAVMRQNYGEPMIF  228 (238)
Q Consensus       213 l~~A~~~~~~~~~~~L  228 (238)
                      ||+|+..++.+++++|
T Consensus        94 l~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           94 FDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHh
Confidence            9999999999999987

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.80  E-value=4.8e-19  Score=114.18  Aligned_cols=92  Identities=27%  Similarity=0.346  Sum_probs=60.9

Q ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCcccc
Q 026423           90 RKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG  169 (238)
Q Consensus        90 ~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~  169 (238)
                      ...+..|.||||+|+..|+.+++++|++.++++.            ..+..|.||||+|+..|+.+++++|++.|+++ +
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~------------~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~   84 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVA------------AKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-X   84 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTT------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-T
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCC------------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-c
Confidence            3445566677777777777777777776665533            45666777777777777777777777777665 5


Q ss_pred             ccCCCCCCHHHHHHHcCcHHHHHHH
Q 026423          170 YLNNAEQTPLSIAIDSSLTDIACFI  194 (238)
Q Consensus       170 ~~~~~g~t~l~~a~~~~~~~~~~~L  194 (238)
                      ..+..|.||||+|+..|+.+++++|
T Consensus        85 ~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           85 AQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             ccccCCCcHHHHHHHcCCHHHHHHh
Confidence            6667777777777777777777665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	238
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-13
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.001
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.002
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	6e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	7e-04

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.1 bits (160), Expect = 2e-13
 Identities = 34/176 (19%), Positives = 62/176 (35%), Gaps = 35/176 (19%)

Query: 57  TMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNW---------KGETPLHIAARVG 107
                G T    A  +   K +  + +R  ++  +             G T L  AA  G
Sbjct: 100 ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 159

Query: 108 DPAIVSTILKYAPAITNGT--------------------ESEPESLLR------ITDDEG 141
              ++  +L    A  N                      E+    LL       +  + G
Sbjct: 160 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERG 219

Query: 142 NTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 197
            TPL  AV  KH  +V+ L++++ I +   ++  +T L +A++  L  IA  +  +
Sbjct: 220 KTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 9e-11
 Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 11/111 (9%)

Query: 53  NIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIV 112
           N    M         ++    + + I  +L    + +     +G+TPL +A       +V
Sbjct: 176 NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLV 235

Query: 113 STILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 163
             +L+      N            TD +G T L  AV  K + +  +L K+
Sbjct: 236 QRLLEQEHIEIN-----------DTDSDGKTALLLAVELKLKKIAELLCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 3e-08
 Identities = 27/174 (15%), Positives = 56/174 (32%), Gaps = 30/174 (17%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAP- 120
            N +L  A++  +  ++ ++L    ++  +    G TPLH A ++    IV  +L++   
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64

Query: 121 --------------AITNG------TESEPESLLRITDDEGNTPLHNAVRNKHENVVRML 160
                         A   G            + +   D  G T    A        ++ L
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124

Query: 161 VKK---------DRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHR 205
            K+          +     L     T L  A +    ++   ++D+    +N  
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC 178

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 5e-06
 Identities = 34/263 (12%), Positives = 75/263 (28%), Gaps = 71/263 (26%)

Query: 29  DHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEIL------ 82
           +H L+  ++  D   +  +     N+       G T LH A++     ++  +L      
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65

Query: 83  --------------------------RRRDSLLRKNNWKGETPLHIAARVGDPAIVSTIL 116
                                       + + + + ++ G T    AA  G    +  + 
Sbjct: 66  VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLY 125

Query: 117 KYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE- 175
           K           + +         G T L +A    H  V+++L+ +    +   +N   
Sbjct: 126 KRGA--NVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 183

Query: 176 ------------------------------------QTPLSIAIDSSLTDIACFIIDQRP 199
                                               +TPL +A++     +   +++Q  
Sbjct: 184 NALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH 243

Query: 200 ESLNHRLPEELTLLHSAVMRQNY 222
             +N    +  T L  AV  +  
Sbjct: 244 IEINDTDSDGKTALLLAVELKLK 266

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 1e-05
 Identities = 17/89 (19%), Positives = 33/89 (37%)

Query: 140 EGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRP 199
           E N  L  AV+N+  ++V+ L++              TPL  A+  S  DI   ++    
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 200 ESLNHRLPEELTLLHSAVMRQNYGEPMIF 228
           + +  +       L +A+        +  
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFL 92

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 9e-05
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 11/65 (16%)

Query: 95  KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE 154
           +    L  A +  D  +V  +L+    +               ++ G TPLHNAV+   E
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVN-----------FQEEEGGWTPLHNAVQMSRE 52

Query: 155 NVVRM 159
           ++V +
Sbjct: 53  DIVEL 57

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (147), Expect = 1e-11
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 13/103 (12%)

Query: 98  TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 157
           TPLH+A+ +G   IV  +L+   +              +++ +  TPLH A R  H  V 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPN------------VSNVKVETPLHMAARAGHTEVA 49

Query: 158 RMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPE 200
           + L++  +  +      +QTPL  A     T++   +++    
Sbjct: 50  KYLLQN-KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN 91

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (147), Expect = 1e-11
 Identities = 42/195 (21%), Positives = 71/195 (36%), Gaps = 24/195 (12%)

Query: 61  RGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAP 120
           +  T LHMA R  + +V   +L+ +  +  K     +TPLH AAR+G   +V  +L+   
Sbjct: 32  KVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD-DQTPLHCAARIGHTNMVKLLLENNA 90

Query: 121 AITNGTES---------------------EPESLLRITDDEGNTPLHNAVRNKHENVVRM 159
                T +                     E E+       +G TPLH A +     V  +
Sbjct: 91  NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL 150

Query: 160 LVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMR 219
           L+++D            TPL +A+  +  DI   ++ +   S +       T LH A  +
Sbjct: 151 LLERD-AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG-SPHSPAWNGYTPLHIAAKQ 208

Query: 220 QNYGEPMIFISLNKC 234
                    +     
Sbjct: 209 NQVEVARSLLQYGGS 223

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 2e-10
 Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 13/110 (11%)

Query: 64  TVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAIT 123
           T LH+A    +  ++  +L+R  S    N  K ETPLH+AAR G   +   +L+    + 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNV-KVETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 124 NGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNN 173
                           +  TPLH A R  H N+V++L++ +  P      
Sbjct: 61  ------------AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA 98

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 2e-10
 Identities = 33/191 (17%), Positives = 70/191 (36%), Gaps = 14/191 (7%)

Query: 1   MILRSFEMTEFGTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSP 60
            I       E      +        +      L++  +    ++  +    Q   +  + 
Sbjct: 203 HIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK 262

Query: 61  RGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAP 120
            G T LH+  +   H  + ++L +   ++      G TPLH+A+  G+  +V  +L++  
Sbjct: 263 SGLTPLHLVAQ-EGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA 321

Query: 121 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLS 180
            +                  G +PLH A +  H ++V +L+K        +++   TPL+
Sbjct: 322 DVN------------AKTKLGYSPLHQAAQQGHTDIVTLLLKNG-ASPNEVSSDGTTPLA 368

Query: 181 IAIDSSLTDIA 191
           IA       + 
Sbjct: 369 IAKRLGYISVT 379

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 4e-09
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 13/98 (13%)

Query: 63  NTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAI 122
            T LH+A  + N K++  +L+ +  +  K    G +PLH AA+ G   IV+ +LK   + 
Sbjct: 298 YTPLHVASHYGNIKLVKFLLQHQADVNAKTKL-GYSPLHQAAQQGHTDIVTLLLKNGASP 356

Query: 123 TNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRML 160
                            +G TPL  A R  + +V  +L
Sbjct: 357 N------------EVSSDGTTPLAIAKRLGYISVTDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 4e-07
 Identities = 39/180 (21%), Positives = 66/180 (36%), Gaps = 15/180 (8%)

Query: 51  MQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPA 110
            +   + M+ +G T LH+A ++   +V  E+L  RD+        G TPLH+A    +  
Sbjct: 121 KEASQACMTKKGFTPLHVAAKYGKVRVA-ELLLERDAHPNAAGKNGLTPLHVAVHHNNLD 179

Query: 111 IVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGY 170
           IV  +L    +                   G TPLH A +     V R L++        
Sbjct: 180 IVKLLLPRGGSP------------HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 227

Query: 171 LNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFIS 230
            +    TPL +A      ++   ++ ++    N      LT LH      +     + I 
Sbjct: 228 -SVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIK 285

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 15/83 (18%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 51  MQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPA 110
            Q   +  +  G + LH A +  +  ++  +L +  +   + +  G TPL IA R+G  +
Sbjct: 319 HQADVNAKTKLGYSPLHQAAQQGHTDIV-TLLLKNGASPNEVSSDGTTPLAIAKRLGYIS 377

Query: 111 IVSTILKYAPAITNGTESEPESL 133
           +   +       +    S+   +
Sbjct: 378 VTDVLKVVTDETSFVLVSDKHRM 400

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 58.6 bits (140), Expect = 7e-11
 Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 12/103 (11%)

Query: 60  PRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYA 119
            +G T LH A +  N  ++  ++  + S   K +  G+TP+ +AA+ G   +V  +++  
Sbjct: 185 YKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG 244

Query: 120 PAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK 162
            ++               D   +T    A  N H N+V +  +
Sbjct: 245 ASVE------------AVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 45.1 bits (105), Expect = 2e-06
 Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 12/101 (11%)

Query: 91  KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 150
              +KG T LH AA+V +  IV  ++    +  +             D++G TP+  A +
Sbjct: 182 SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD-----------KQDEDGKTPIMLAAQ 230

Query: 151 NKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA 191
                VV  L+++    +  ++  + T   +A  ++  +I 
Sbjct: 231 EGRIEVVMYLIQQ-GASVEAVDATDHTARQLAQANNHHNIV 270

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 45.1 bits (105), Expect = 3e-06
 Identities = 15/96 (15%), Positives = 28/96 (29%), Gaps = 5/96 (5%)

Query: 64  TVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAIT 123
           + + +         I E + R    +        T LH  A          ++ +     
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNIIDPRH-NRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 124 NGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRM 159
               ++        D + NTPL  AV  +   +V  
Sbjct: 61  IAAGADVN----AMDCDENTPLMLAVLARRRRLVAY 92

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 43.2 bits (100), Expect = 1e-05
 Identities = 11/87 (12%), Positives = 29/87 (33%), Gaps = 1/87 (1%)

Query: 32  LLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRK 91
           L    +  +   +  + G   +        G T + +A +    +V+  ++++  S+   
Sbjct: 191 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV 250

Query: 92  NNWKGETPLHIAARVGDPAIVSTILKY 118
           +     T   +A       IV    + 
Sbjct: 251 DAT-DHTARQLAQANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 14/73 (19%), Positives = 21/73 (28%), Gaps = 14/73 (19%)

Query: 97  ETPLHIA-ARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 155
           E+P+ +     G  AI   I +             ES+  I      T LH    N    
Sbjct: 1   ESPIKLHTEAAGSYAITEPITR-------------ESVNIIDPRHNRTVLHWIASNSSAE 47

Query: 156 VVRMLVKKDRIPL 168
               L+  +    
Sbjct: 48  KSEDLIVHEAKEC 60

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.4 bits (85), Expect = 8e-04
 Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 1/85 (1%)

Query: 137 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID 196
              +G T LH A +  +  +V+ LV +        +   +TP+ +A      ++  ++I 
Sbjct: 183 EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ 242

Query: 197 QRPESLNHRLPEELTLLHSAVMRQN 221
           Q    +      + T    A    +
Sbjct: 243 QGAS-VEAVDATDHTARQLAQANNH 266

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 51.4 bits (122), Expect = 2e-08
 Identities = 15/117 (12%), Positives = 35/117 (29%), Gaps = 10/117 (8%)

Query: 89  LRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNA 148
             K   K E    +AA  G  + + T+               + ++++   E       A
Sbjct: 83  AHKKGIKSEVICFVAAITGCSSALDTLC---------LLLTSDEIVKVIQAENYQAFRLA 133

Query: 149 VRNKHENVVRMLVKKDRIP-LGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNH 204
             N H +V+  L +      +  +         +A ++    +   + +  P     
Sbjct: 134 AENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATA 190

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 47.2 bits (111), Expect = 5e-07
 Identities = 15/166 (9%), Positives = 35/166 (21%), Gaps = 23/166 (13%)

Query: 46  LIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAAR 105
                 +      +         A+   +H VI        + L                
Sbjct: 181 CELAPTEATAMIQAENYYAFRWAAVGRGHHNVI--------NFLLDCPVMLAYAEIHEFE 232

Query: 106 VGDPAIVSTILKYAP-----------AITNGTESEPESLLRITDDEGNTPLHNAVRNKHE 154
            G+  +   I ++             +  +G          +        L         
Sbjct: 233 YGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLL 292

Query: 155 NVVRMLVK----KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID 196
           + +R L+     K   P   +       L +A+          ++ 
Sbjct: 293 DDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.8 bits (120), Expect = 3e-08
 Identities = 17/122 (13%), Positives = 44/122 (36%), Gaps = 10/122 (8%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G T    A ++    ++  I+++++  ++    + E+  +        +I+  +      
Sbjct: 189 GMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII 248

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
                     ++L   D  G+T L+ A R  + ++V  L+          N +   P+  
Sbjct: 249 ---------ANMLNAQDSNGDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRPVDF 298

Query: 182 AI 183
             
Sbjct: 299 GA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.0 bits (97), Expect = 3e-05
 Identities = 34/243 (13%), Positives = 69/243 (28%), Gaps = 39/243 (16%)

Query: 18  PTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKV 77
              D E    ++  L  +L    +   + +     N  S          H++      +V
Sbjct: 29  VVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEV 88

Query: 78  IPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILK-------------------- 117
                  + +L    +  G TPLH    + +  +V  ++K                    
Sbjct: 89  NDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAV 148

Query: 118 -----YAPAITNGTESEPESLLRITDDEGNTPLHNAV------------RNKHENVVRML 160
                Y               L + D    T LH+ +            +   + ++  +
Sbjct: 149 KSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWI 208

Query: 161 VKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPES--LNHRLPEELTLLHSAVM 218
           VKK   P+    N +++  +         I   +  +   +  LN +     T L+ A  
Sbjct: 209 VKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAAR 268

Query: 219 RQN 221
             N
Sbjct: 269 LGN 271

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.8 bits (94), Expect = 7e-05
 Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 138 DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFI--- 194
           D+ GNTPLH      +  +V+ LVK       Y +N  ++ L  A+ S     +      
Sbjct: 104 DEHGNTPLHWLTSIANLELVKHLVKHG-SNRLYGDNMGESCLVKAVKSVNNYDSGTFEAL 162

Query: 195 IDQRPESLNHRLPEELTLLHSAVMRQNY 222
           +D     L        T+LH  ++    
Sbjct: 163 LDYLYPCLILEDSMNRTILHHIIITSGM 190

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.1 bits (87), Expect = 5e-04
 Identities = 24/161 (14%), Positives = 47/161 (29%), Gaps = 7/161 (4%)

Query: 63  NTVLHMAIRFRNHKVIPEILRRRDSLLRKNN---WKGETPLHIAARVGDPAIVSTILKYA 119
            + L  A++  N+          D L            T LH           S   KY 
Sbjct: 141 ESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYY 200

Query: 120 PAITNGT-ESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG--YLNNAEQ 176
             I  G    +    ++   +E  +  ++    + ++++  L  K  I       ++   
Sbjct: 201 LDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGD 260

Query: 177 TPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAV 217
           T L+IA       I   ++D   +         L  +    
Sbjct: 261 TCLNIAARLGNISIVDALLDYGAD-PFIANKSGLRPVDFGA 300

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.7 bits (117), Expect = 7e-08
 Identities = 25/143 (17%), Positives = 40/143 (27%), Gaps = 10/143 (6%)

Query: 96  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 155
           G+T LH+A        +  +L ++              L + +D G T LH A      +
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGH---------EYLDLQNDLGQTALHLAAILGEAS 59

Query: 156 VVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHS 215
            V  L                T L +A        AC ++  RP          LT    
Sbjct: 60  TVEKLYAAGAGV-LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQD 118

Query: 216 AVMRQNYGEPMIFISLNKCLSIV 238
                ++    +    N      
Sbjct: 119 CTPDTSHAPAAVDSQPNPENEEE 141

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.6 bits (109), Expect = 7e-07
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 138 DDEGNTPLHNAVRNKHENVVRMLVKK--DRIPLGYLNNAEQTPLSIAI 183
            ++G+T LH AV ++HE  +  L+        L   N+  QT L +A 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA 53

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.9 bits (107), Expect = 1e-06
 Identities = 26/163 (15%), Positives = 54/163 (33%), Gaps = 12/163 (7%)

Query: 1   MILRSFEMTEFGTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSP 60
           ++          +D          P T         +   E++        +      + 
Sbjct: 97  LLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY 156

Query: 61  RGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAP 120
            G+T LH+A+  ++ +++  +      L +     G TPLH+A      +++  +LK   
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216

Query: 121 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 163
             T                 G TPL +A+   +  + R+L   
Sbjct: 217 DPT------------ARMYGGRTPLGSALLRPNPILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (103), Expect = 4e-06
 Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 14/112 (12%)

Query: 54  IFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKN--NWKGETPLHIAARVGDPAI 111
           +F  ++  G+T LH+A+  ++   +  +L         +  N  G+T LH+AA +G+ + 
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 112 VSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 163
           V  +      +               +  G+T LH A R +      +L++ 
Sbjct: 61  VEKLYAAGAGVLV------------AERGGHTALHLACRVRAHTCACVLLQP 100

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 1e-07
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 11/66 (16%)

Query: 98  TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 157
            PLH A    +   V  +L   P++               D +G  PLH +V  +   + 
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLL-----------QKDQDGRIPLHWSVSFQAHEIT 50

Query: 158 RMLVKK 163
             L+ K
Sbjct: 51  SFLLSK 56

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.4 bits (103), Expect = 3e-06
 Identities = 13/47 (27%), Positives = 19/47 (40%)

Query: 63  NTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDP 109
           N  LH A        + E+L  + SLL + +  G  PLH +      
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH 47

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 1e-05
 Identities = 20/156 (12%), Positives = 47/156 (30%), Gaps = 14/156 (8%)

Query: 42  HQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLH 101
             +  +  R                      +    + + L    + +R  +   + PLH
Sbjct: 84  EVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLH 143

Query: 102 IAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV 161
                            +  +        +S +   D +G TPL +A+   H +   +LV
Sbjct: 144 R-----------AASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV 192

Query: 162 KKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 197
           +K       ++N       +A++     +  F ++ 
Sbjct: 193 EKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNN 225

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.3 bits (95), Expect = 3e-05
 Identities = 13/93 (13%), Positives = 30/93 (32%)

Query: 142 NTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPES 201
           N PLH A        V+ L+      L   +   + PL  ++     +I  F++ +    
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 202 LNHRLPEELTLLHSAVMRQNYGEPMIFISLNKC 234
                P++       +        ++    ++ 
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 93

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.2 bits (113), Expect = 3e-07
 Identities = 18/103 (17%), Positives = 38/103 (36%), Gaps = 13/103 (12%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G T LH+A   + +  + ++L +    +   ++ G TPLH AA  G       +++    
Sbjct: 199 GGTALHVAAA-KGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD 257

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKD 164
           +               +  G T    A  +    +  +  K++
Sbjct: 258 ME------------AVNKVGQTAFDVADEDILGYLEELQKKQN 288

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.3 bits (108), Expect = 1e-06
 Identities = 27/116 (23%), Positives = 41/116 (35%), Gaps = 13/116 (11%)

Query: 67  HMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGT 126
                    +   + L        ++   G T LH+AA  G   ++  +L  A    N  
Sbjct: 170 RKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVL-KLLIQARYDVN-- 226

Query: 127 ESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 182
                    I D +G TPLH A     E   R+LV+     +  +N   QT   +A
Sbjct: 227 ---------IKDYDGWTPLHAAAHWGKEEACRILVEN-LCDMEAVNKVGQTAFDVA 272

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 2/74 (2%)

Query: 32  LLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRK 91
           L     +G    + L+     ++ +     G T LH A  +   +    ++     +   
Sbjct: 203 LHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV 261

Query: 92  NNWKGETPLHIAAR 105
           N   G+T   +A  
Sbjct: 262 NK-VGQTAFDVADE 274

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 8e-07
 Identities = 18/108 (16%), Positives = 43/108 (39%), Gaps = 13/108 (12%)

Query: 51  MQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPA 110
             +I +     G + L  A+   N   + ++L +  + +    + G + LH A+  G   
Sbjct: 133 GADIDAVDIKSGRSPLIHAVE-NNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLP 191

Query: 111 IVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVR 158
           +V T+++     +            + +   +TPL  A   +  +++R
Sbjct: 192 LVRTLVRSGADSS------------LKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 4e-06
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 8/64 (12%)

Query: 96  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 155
           G+TPLHIA   G+   V  ++        G E      L I ++   TPLH AV     +
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQ--GGRE------LDIYNNLRQTPLHLAVITTLPS 54

Query: 156 VVRM 159
           VVR+
Sbjct: 55  VVRL 58

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 4e-05
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 139 DEGNTPLHNAVRNKHENVVRMLVKKDR---IPLGYLNNAEQTPLSIA 182
           ++G+TPLH AV   +   V  LV   +     L   NN  QTPL +A
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA 47

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 1e-06
 Identities = 23/138 (16%), Positives = 44/138 (31%), Gaps = 22/138 (15%)

Query: 63  NTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAI 122
           N ++         + + E +    SL  + +    T LH A   G   IV  +L+    +
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 123 TNGTESEPESL---------------------LRITDDEGNTPLHNAVRNKHENVVRMLV 161
            +  ++    L                     +   +  G TPLH A       +  ML+
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 123

Query: 162 KKDRIPLGYLNNAEQTPL 179
           +         ++ E T +
Sbjct: 124 EGG-ANPDAKDHYEATAM 140

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 1e-05
 Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 14/121 (11%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G T LH A     H++   +L    +   K+++   T +H AA  G+  ++  +L Y  +
Sbjct: 103 GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY-EATAMHRAAAKGNLKMIHILLYYKAS 161

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
                         I D EGNTPLH A   +     ++LV +    +   N  E+TPL +
Sbjct: 162 T------------NIQDTEGNTPLHLACDEERVEEAKLLVSQG-ASIYIENKEEKTPLQV 208

Query: 182 A 182
           A
Sbjct: 209 A 209

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 3e-05
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 14/101 (13%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
             T +H     + +  +  IL    +     + +G TPLH+A           ++    +
Sbjct: 136 EATAMHR-AAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS 194

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK 162
           I             I + E  TPL  A +     +++ +V+
Sbjct: 195 IY------------IENKEEKTPLQVA-KGGLGLILKRMVE 222

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 3e-06
 Identities = 18/109 (16%), Positives = 37/109 (33%), Gaps = 12/109 (11%)

Query: 67  HMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGT 126
           H+A       ++  ++     +  +    G T LH+A  + +P +VS +LK    +    
Sbjct: 116 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN--- 172

Query: 127 ESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE 175
                        +G +P           + + L +     L  L  +E
Sbjct: 173 ---------RVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE 212

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 4e-06
 Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 8/64 (12%)

Query: 96  GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 155
           G++ LH+A    + A+   +++      +         L   ++   TPLH AV      
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQ--VKGDLAF------LNFQNNLQQTPLHLAVITNQPE 53

Query: 156 VVRM 159
           +   
Sbjct: 54  IAEA 57

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 2e-05
 Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 1/82 (1%)

Query: 37  RRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKG 96
             G    + L+     ++ +     G T LH+A+  +N  ++  +L+    + R     G
Sbjct: 120 IHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ-G 178

Query: 97  ETPLHIAARVGDPAIVSTILKY 118
            +P  +        I   + + 
Sbjct: 179 YSPYQLTWGRPSTRIQQQLGQL 200

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 4e-04
 Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 140 EGNTPLHNAVRNKHENVVRMLVKK---DRIPLGYLNNAEQTPLSIA 182
           +G++ LH A+ ++ + +   ++++   D   L + NN +QTPL +A
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA 46

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRR---RDSLLRKNNWKGETPLHIAAR 105
           G++ LH+AI      +  E++R+     + L   N   +TPLH+A  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVI 48

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.1 bits (95), Expect = 2e-05
 Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 29/127 (22%)

Query: 66  LHMAIRFRNHKVIPEILRRRDSL-----LRKNNWKGETPLHIAARVGDPAIVSTI----- 115
           L  A++ R+   + +       L     L   +   ET LH+A R  D   +  +     
Sbjct: 10  LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ 69

Query: 116 -------------------LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENV 156
                                   A         ++ + I ++ G TPL  A R KHE+ 
Sbjct: 70  NSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHC 129

Query: 157 VRMLVKK 163
             +L + 
Sbjct: 130 EELLTQA 136

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.9 bits (94), Expect = 4e-05
 Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 13/99 (13%)

Query: 62  GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
           G T LH A    N + +  +L    +   +++   ETPL +AAR G       +L     
Sbjct: 123 GKTALHWAAAVNNTEAVNILLMHHANRDAQDDKD-ETPLFLAAREGSYEASKALLDNFAN 181

Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRML 160
                         ITD     P   A    H ++VR+L
Sbjct: 182 RE------------ITDHMDRLPRDVASERLHHDIVRLL 208

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 1e-04
 Identities = 5/28 (17%), Positives = 10/28 (35%)

Query: 136 ITDDEGNTPLHNAVRNKHENVVRMLVKK 163
             + +G+T    A       VV ++   
Sbjct: 128 HRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.1 bits (84), Expect = 6e-04
 Identities = 4/27 (14%), Positives = 11/27 (40%)

Query: 134 LRITDDEGNTPLHNAVRNKHENVVRML 160
           +        T    ++ N +E++  +L
Sbjct: 126 VHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 7e-04
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 134 LRITDDEGNTPLHNAVRNKHENVVRMLV 161
           L   D  G TPL  A++   +++V +L 
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDILQ 153

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	238
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	100.0
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	100.0
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.98
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.97
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.97
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.96
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.95
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.95
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.94
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.94
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.93
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.92
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.91
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.91

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8e-43  Score=257.65  Aligned_cols=208  Identities=20%  Similarity=0.218  Sum_probs=183.3

Q ss_pred             CCCCHHHHHHHHcCCHHHHHHHHhhhhcc--ccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHH
Q 026423           26 TTMDHELLNVLRRGDEHQISLIAGRMQNI--FSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIA  103 (238)
Q Consensus        26 ~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a  103 (238)
                      ..|.||||+||..|+.+++++|+++|+++  .+..+..|.||||+|+..|+.+++++|+ ..+++++..+..|.||||+|
T Consensus         7 ~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll-~~ga~i~~~d~~g~tpL~~A   85 (255)
T d1oy3d_           7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY-AAGAGVLVAERGGHTALHLA   85 (255)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCSSCCCTTSCCHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccc-cccccccccccccchhhhhh
Confidence            44566999999999999999999998763  2667889999999999999999999999 56788899999999999999


Q ss_pred             HHhCCHHHHHHHHhhCccccCCCCCC-----------------------------------CcccccccCCCCCcHHHHH
Q 026423          104 ARVGDPAIVSTILKYAPAITNGTESE-----------------------------------PESLLRITDDEGNTPLHNA  148 (238)
Q Consensus       104 ~~~~~~~~~~~ll~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~l~~a  148 (238)
                      +..++.+++++|++............                                   ....++.++..|.||||+|
T Consensus        86 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A  165 (255)
T d1oy3d_          86 CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVA  165 (255)
T ss_dssp             TTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHH
T ss_pred             hccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccccc
Confidence            99999999999988764432111100                                   1334567889999999999


Q ss_pred             HHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHh
Q 026423          149 VRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIF  228 (238)
Q Consensus       149 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  228 (238)
                      ++.++.+++++|++.+++.....+..|.||||+|++.|+.+++++|+++| ++++.+|..|.||||+|+.+++.+++++|
T Consensus       166 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~g-adin~~d~~g~t~L~~A~~~~~~~i~~~L  244 (255)
T d1oy3d_         166 VIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLRPNPILARLL  244 (255)
T ss_dssp             HHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTSSCHHHHHHH
T ss_pred             ccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence            99999999999999999986677889999999999999999999999998 99999999999999999999999999999


Q ss_pred             hhccccc
Q 026423          229 ISLNKCL  235 (238)
Q Consensus       229 ~~~g~~~  235 (238)
                      +++||+-
T Consensus       245 l~~Ga~~  251 (255)
T d1oy3d_         245 RAHGAPE  251 (255)
T ss_dssp             HHTTCCC
T ss_pred             HHcCCCC
Confidence            9999974

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-37  Score=223.18  Aligned_cols=186  Identities=19%  Similarity=0.186  Sum_probs=128.2

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhC
Q 026423           28 MDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVG  107 (238)
Q Consensus        28 ~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~  107 (238)
                      +.||||+|+..|+.+++++++..+.+. ...+..+.++++.++..++.+++++|++ .+.+++.++..|.||||+|+..+
T Consensus        37 G~TpLh~Aa~~g~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~Ll~-~~~d~~~~d~~g~tpL~~A~~~~  114 (223)
T d1uoha_          37 SRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYAASKN  114 (223)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCCHHHHHHHhhhhccccccccccccc-ccccccccccccccccccccchhHHHhc-cCceeEeeCCCCCchhhHHHHcC
Confidence            344677777777777777777766666 5556666677777777777777777773 44566667777777777777777


Q ss_pred             CHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCc
Q 026423          108 DPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSL  187 (238)
Q Consensus       108 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  187 (238)
                      +.+++++|+++|+++.            ..+..|.||||+|+..++.+++++|...+.++ +..+..|+||||+|+..|+
T Consensus       115 ~~e~~~~Ll~~g~d~~------------~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i-~~~d~~g~TpL~~Aa~~g~  181 (223)
T d1uoha_         115 RHEIAVMLLEGGANPD------------AKDHYEATAMHRAAAKGNLKMIHILLYYKAST-NIQDTEGNTPLHLACDEER  181 (223)
T ss_dssp             CHHHHHHHHHTTCCTT------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTC
T ss_pred             CHHHHHHHHHCCCCCC------------CcCCCCCccchhhhhcCCcchhhhhcccccee-eeccCCCCceeccccccCc
Confidence            7777777777665543            45666777777777777777777777776665 5667777777777777777


Q ss_pred             HHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhh
Q 026423          188 TDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFIS  230 (238)
Q Consensus       188 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  230 (238)
                      .+++++|++.| ++++.+|.+|+||||+| ..|+.+++++|++
T Consensus       182 ~~~v~~LL~~G-ad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         182 VEEAKLLVSQG-ASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             HHHHHHHHHTT-CCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             HHHHHHHHHCC-CCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            77777777766 77777777777777766 3566667776664

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-37  Score=223.31  Aligned_cols=193  Identities=21%  Similarity=0.253  Sum_probs=176.9

Q ss_pred             HHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHH
Q 026423           31 ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPA  110 (238)
Q Consensus        31 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~  110 (238)
                      .++.++..|+.+.|+.++..+....+..|..|+||||+|+..|+.+++++++. ...........+.++++.++..++.+
T Consensus         6 ~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (223)
T d1uoha_           6 MVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ-LGVPVNDKDDAGWSPLHIAASAGRDE   84 (223)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH-HTCCSCCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccc-cccccccccccccccccccccccccc
Confidence            68899999999999888876554448899999999999999999999999995 55556667778999999999999999


Q ss_pred             HHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHH
Q 026423          111 IVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDI  190 (238)
Q Consensus       111 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  190 (238)
                      ++++|+++++++.            ..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..++.++
T Consensus        85 i~~~Ll~~~~d~~------------~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~~~~t~L~~a~~~~~~~~  151 (223)
T d1uoha_          85 IVKALLGKGAQVN------------AVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKM  151 (223)
T ss_dssp             HHHHHHHTTCCTT------------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHH
T ss_pred             hhHHHhccCceeE------------eeCCCCCchhhHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCccchhhhhcCCcch
Confidence            9999999987643            67889999999999999999999999999988 7889999999999999999999


Q ss_pred             HHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCCC
Q 026423          191 ACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV  238 (238)
Q Consensus       191 ~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~~  238 (238)
                      +++|.+.+ .+++.+|..|+||||.|+.+++.+++++|+++|++++++
T Consensus       152 ~~~L~~~~-~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~  198 (223)
T d1uoha_         152 IHILLYYK-ASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIE  198 (223)
T ss_dssp             HHHHHHTT-CCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCC
T ss_pred             hhhhcccc-ceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCC
Confidence            99999998 999999999999999999999999999999999999863

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=9.5e-37  Score=227.36  Aligned_cols=202  Identities=16%  Similarity=0.142  Sum_probs=171.1

Q ss_pred             CCCCHHHHHHHHcCCHHHHHHHH--------hhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCC
Q 026423           26 TTMDHELLNVLRRGDEHQISLIA--------GRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGE   97 (238)
Q Consensus        26 ~~~~~~l~~A~~~~~~~~v~~Ll--------~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~   97 (238)
                      ..+.||||+||..|+.++|+.|+        +.|+++ +..|..|.||||+|+..|+.+++++|++ .+++++.++..|.
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadv-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~-~Gad~n~~~~~g~  108 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDENTPLMLAVLARRRRLVAYLMK-AGADPTIYNKSER  108 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTCC
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCc-cccCCCCCeeeccccccccccccccccc-ccccccccccccc
Confidence            34667999999999999888775        557888 8899999999999999999999999994 6788899999999


Q ss_pred             cHHHHHHHhCCHHHHHHHHhhCccccCC---CCCC--------------------------------CcccccccCCCCC
Q 026423           98 TPLHIAARVGDPAIVSTILKYAPAITNG---TESE--------------------------------PESLLRITDDEGN  142 (238)
Q Consensus        98 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~---~~~~--------------------------------~~~~~~~~~~~~~  142 (238)
                      ||+++|+..++.++++++..........   ....                                .....+..+..|.
T Consensus       109 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  188 (277)
T d2fo1e1         109 SALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGR  188 (277)
T ss_dssp             CHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCC
T ss_pred             ccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCC
Confidence            9999999999999999887654321111   1000                                0112344667899


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCc
Q 026423          143 TPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNY  222 (238)
Q Consensus       143 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~  222 (238)
                      |+||+++..++.+++++++.......+..+..|.||||+|++.|+.+++++|+++| ++++.+|.+|+||||+|+++|+.
T Consensus       189 t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g-adin~~d~~G~T~L~~A~~~~~~  267 (277)
T d2fo1e1         189 TALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG-ASVEAVDATDHTARQLAQANNHH  267 (277)
T ss_dssp             CTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCSSSCCHHHHHHHTTCH
T ss_pred             CccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCc-CCCCCcCCCCCCHHHHHHHcCCH
Confidence            99999999999999998776655555788999999999999999999999999999 99999999999999999999999


Q ss_pred             chhHHhhh
Q 026423          223 GEPMIFIS  230 (238)
Q Consensus       223 ~~~~~L~~  230 (238)
                      +++++|++
T Consensus       268 ~iv~lL~~  275 (277)
T d2fo1e1         268 NIVDIFDR  275 (277)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99999986

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-35  Score=220.97  Aligned_cols=131  Identities=18%  Similarity=0.185  Sum_probs=104.0

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhh-CccccCCCCCCCcccccccCCCCCcHHHHHHHcC----CHHHHHHHHHcCCcccc
Q 026423           95 KGETPLHIAARVGDPAIVSTILKY-APAITNGTESEPESLLRITDDEGNTPLHNAVRNK----HENVVRMLVKKDRIPLG  169 (238)
Q Consensus        95 ~g~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~----~~~~~~~ll~~~~~~~~  169 (238)
                      .|.||||+|+..|+.+++++|+++ ++++            +..+..+.+++..+...+    ...++++|+++|+++ +
T Consensus       147 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~-n  213 (285)
T d1wdya_         147 GGATALMDAAEKGHVEVLKILLDEMGADV------------NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-N  213 (285)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHTSCCCT------------TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-S
T ss_pred             cCchHHHHHHHcCCHHHHHHHHhccCCCc------------ccccCCCCcccccccccccchHHHHHHHHHHHCCCCC-C
Confidence            466777777777777777777754 3332            245556666655543322    245777778888876 6


Q ss_pred             ccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCCC
Q 026423          170 YLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV  238 (238)
Q Consensus       170 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~~  238 (238)
                      .++..|.||||.|++.|+.+++++|++.++++++.+|.+|.||||+|++.++.+++++|+++||++|.+
T Consensus       214 ~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~  282 (285)
T d1wdya_         214 VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG  282 (285)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCS
T ss_pred             ccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcc
Confidence            778899999999999999999999998766999999999999999999999999999999999999874

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=3e-36  Score=226.30  Aligned_cols=202  Identities=17%  Similarity=0.135  Sum_probs=172.7

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhC
Q 026423           28 MDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVG  107 (238)
Q Consensus        28 ~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~  107 (238)
                      +.++|+.||..|+.++|++|+++|+++ +..+..|.||||+|+..|+.+++++|++ .+......+..+.+||+.++..+
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~Gadv-n~~d~~G~T~L~~A~~~g~~eiv~~Ll~-~~~~~~~~~~~~~~~L~~a~~~~  117 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVE-NGANINQPDNEGWIPLHAAASCG  117 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCcHHHHHHhcCCceeeeeecc-ccccccccccccccccccccccc
Confidence            457899999999999999999999999 8999999999999999999999999995 56667788889999999999999


Q ss_pred             CHHHHHHHHhhCccccCCCCCCC------------------------------------------------cccccccCC
Q 026423          108 DPAIVSTILKYAPAITNGTESEP------------------------------------------------ESLLRITDD  139 (238)
Q Consensus       108 ~~~~~~~ll~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~~  139 (238)
                      +.++++.|++++...........                                                .......+.
T Consensus       118 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (291)
T d1s70b_         118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK  197 (291)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTT
T ss_pred             ccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccC
Confidence            99999999999876544332221                                                111233567


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHh
Q 026423          140 EGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMR  219 (238)
Q Consensus       140 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~  219 (238)
                      .|.||||.|+..|+.+++++|++.|+++ +..+..|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|++ 
T Consensus       198 ~g~t~L~~a~~~~~~~~~~~Ll~~g~di-n~~~~~g~TpL~~A~~~g~~~iv~lLl~~G-adv~~~d~~G~TaL~~A~e-  274 (291)
T d1s70b_         198 SGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENL-CDMEAVNKVGQTAFDVADE-  274 (291)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTTTSCCS-
T ss_pred             CCCChhhHHHHcCChhhhcccccceecc-cccccCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHH-
Confidence            8889999999999999999999999887 778889999999999999999999999988 8999999999999999964 


Q ss_pred             cCcchhHHhhhcccccCC
Q 026423          220 QNYGEPMIFISLNKCLSI  237 (238)
Q Consensus       220 ~~~~~~~~L~~~g~~~~~  237 (238)
                         +++++|.+.++.-|+
T Consensus       275 ---~~~~~L~~~~~~~~~  289 (291)
T d1s70b_         275 ---DILGYLEELQKKQNL  289 (291)
T ss_dssp             ---GGGHHHHHHHHHTTS
T ss_pred             ---HHHHHHHHHhhhccC
Confidence               688888887776554

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-37  Score=222.27  Aligned_cols=198  Identities=19%  Similarity=0.173  Sum_probs=171.6

Q ss_pred             CCHHHHHHHHcCCHH----HHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHH
Q 026423           28 MDHELLNVLRRGDEH----QISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIA  103 (238)
Q Consensus        28 ~~~~l~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a  103 (238)
                      |.||||+|+..|+.+    +++++...|.++ +..+..|.||||+|+..|+.+++++|+ +.+.+++.++..|.+||+++
T Consensus         2 G~t~Lh~A~~~g~~~~~~~li~~~~~~~~~i-n~~d~~g~TpLh~A~~~~~~~iv~~L~-~~g~d~~~~d~~g~t~l~~~   79 (221)
T d1iknd_           2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEALL-GAGCDPELRDFRGNTPLHLA   79 (221)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----CCCC-CCCCTTCCCHHHHHHHTTCHHHHHCCC-SCCCCSCCCCTTCCCHHHHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHHHHhCCCCc-ccCCCCCCccccccccccccccccccc-cccccccccccccccccccc
Confidence            456899999999965    455666678888 889999999999999999999999999 67788899999999999999


Q ss_pred             HHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHH
Q 026423          104 ARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAI  183 (238)
Q Consensus       104 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~  183 (238)
                      +..++.++++.+++.+.....      ..........+.||+|.|+..++.+++++++..|+......+..|.||||+|+
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~  153 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPHL------HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV  153 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSS------SCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH
T ss_pred             cccccccccchhhhhcccccc------cccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCcccccc
Confidence            999999999999988755332      12233455678999999999999999999999999886566778999999999


Q ss_pred             HcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccc
Q 026423          184 DSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKC  234 (238)
Q Consensus       184 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~  234 (238)
                      +.|+.+++++|+++| ++++.+|..|+||||+|+.+++.+++++|.+++.+
T Consensus       154 ~~g~~~~v~~Ll~~g-ad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         154 DLQNPDLVSLLLKCG-ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             HTTCHHHHHHHHTTT-CCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             ccccHHHHHHHHhcC-CcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            999999999999999 99999999999999999999999999999998765

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.7e-35  Score=212.94  Aligned_cols=201  Identities=16%  Similarity=0.199  Sum_probs=147.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCcccc---ccCCCCCCcHHHHHHHh
Q 026423           30 HELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLL---RKNNWKGETPLHIAARV  106 (238)
Q Consensus        30 ~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~---~~~~~~g~~~l~~a~~~  106 (238)
                      +|||+||..|+.++++.|++.+....+..+.+|.||||+|+..|+.+++++|++ .++++   +..+..|.+|+++++..
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS-KMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHT-TCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhh-hhccccccccccccccccccccccc
Confidence            378999999999999888886544447888889999999999999999999884 44443   34566788888888888


Q ss_pred             CCHHHHHHHHhhCccccCCCCCCC-----------------------cccccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 026423          107 GDPAIVSTILKYAPAITNGTESEP-----------------------ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK  163 (238)
Q Consensus       107 ~~~~~~~~ll~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~  163 (238)
                      +..++++.++..+...........                       .......+..|+||||+|+..|+.+++++|++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  160 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL  160 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccc
Confidence            888888888877654332211110                       112334567777888888888888888888877


Q ss_pred             CCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccc
Q 026423          164 DRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKC  234 (238)
Q Consensus       164 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~  234 (238)
                      +...++..+..|+||||+|+..|+.+++++|+++.+++++.+|..|+||||+|+.   .+++++|+++|+|
T Consensus       161 ~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         161 GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             TCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             ccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence            7655567777788888888888888888888765337788888888888887764   3677888888776

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-35  Score=227.90  Aligned_cols=228  Identities=17%  Similarity=0.208  Sum_probs=146.8

Q ss_pred             chhhhhhhccccCCCCCCCCCCCCCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHH
Q 026423            4 RSFEMTEFGTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILR   83 (238)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~   83 (238)
                      ++.+++++.++.. .+++..+ ..+.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+.
T Consensus        11 g~~~~v~~Ll~~g-~~in~~d-~~g~TpL~~A~~~g~~~iv~~Ll~~gadi-~~~~~~g~t~L~~A~~~g~~~~~~~Ll~   87 (408)
T d1n11a_          11 GHLPIVKNLLQRG-ASPNVSN-VKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIGHTNMVKLLLE   87 (408)
T ss_dssp             TCHHHHHHHHHTT-CCSCCSS-SCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHCC-CCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            5566666644432 1222222 33556899999999999999999999999 8899999999999999988877776653


Q ss_pred             -----------------------------------------------------------------cCccccccCCCCCCc
Q 026423           84 -----------------------------------------------------------------RRDSLLRKNNWKGET   98 (238)
Q Consensus        84 -----------------------------------------------------------------~~~~~~~~~~~~g~~   98 (238)
                                                                                       ..+..++..+..|.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~  167 (408)
T d1n11a_          88 NNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLT  167 (408)
T ss_dssp             HTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCC
T ss_pred             hhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCch
Confidence                                                                             334455666778889


Q ss_pred             HHHHHHHhCCHHHHHHHHhhCccccCCCCCCC------------------------------------------------
Q 026423           99 PLHIAARVGDPAIVSTILKYAPAITNGTESEP------------------------------------------------  130 (238)
Q Consensus        99 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~------------------------------------------------  130 (238)
                      ||++|+..++.+++++|+++|+++......+.                                                
T Consensus       168 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  247 (408)
T d1n11a_         168 PLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMV  247 (408)
T ss_dssp             HHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHh
Confidence            99999999999999999998876543322211                                                


Q ss_pred             ------cccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCccccc
Q 026423          131 ------ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNH  204 (238)
Q Consensus       131 ------~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~  204 (238)
                            ....+..+..|.+|++.|++.++.+++++|++.|+++ +..+..+.|||+.++..+..++++++++.| ++++.
T Consensus       248 ~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~-~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g-~~in~  325 (408)
T d1n11a_         248 ALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQHQ-ADVNA  325 (408)
T ss_dssp             HHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCCHHHHHHHSSCSHHHHHHHHTT-CCTTC
T ss_pred             hhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCcc-ccccccccccchhhcccCcceeeeeecccc-ccccc
Confidence                  1122334566777777777777777777777776654 344444444444444444444444444444 44444


Q ss_pred             CCCCCCcHHHHHHHhcCcchhHHhhhcccccC
Q 026423          205 RLPEELTLLHSAVMRQNYGEPMIFISLNKCLS  236 (238)
Q Consensus       205 ~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~  236 (238)
                      +|..|.||||+|++.|+.+++++|+++||+++
T Consensus       326 ~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n  357 (408)
T d1n11a_         326 KTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN  357 (408)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            44444444444444444444444444444444

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.8e-34  Score=208.30  Aligned_cols=180  Identities=18%  Similarity=0.210  Sum_probs=133.7

Q ss_pred             chhhhhhhccccCCCCCCCCCCCCCCHHHHHHHHcCCHHHHHHHHhhhhccc--cccCCCCchHHHHHHHcCCc------
Q 026423            4 RSFEMTEFGTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIF--STMSPRGNTVLHMAIRFRNH------   75 (238)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~--~~~~~~g~t~L~~a~~~~~~------   75 (238)
                      ++++.++..+......++..+ ..+.||||+|+..|+.+++++|+++|+++.  +..+..|.+|+|+++..+..      
T Consensus        11 g~~~~v~~Ll~~~~~~~~~~d-~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (229)
T d1ixva_          11 NEFFKVQELLHSKPSLLLQKD-QDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL   89 (229)
T ss_dssp             TCHHHHHHHHHHCGGGTTCCC-TTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCcccccC-CCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccccccccccc
Confidence            445666654443332333332 345558999999999999999999988762  23455566666666555554      


Q ss_pred             -----------------------------chHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCC
Q 026423           76 -----------------------------KVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGT  126 (238)
Q Consensus        76 -----------------------------~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~  126 (238)
                                                   +++++|+ ..+...+..+..|+||||+|+..|+.+++++|++.+..     
T Consensus        90 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~-----  163 (229)
T d1ixva_          90 YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI-ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS-----  163 (229)
T ss_dssp             HSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCC-----
T ss_pred             ccccccccccccccccccccccccccchhhhhhhhh-hhcccccccCCCCCCccchhhhcccccccccccccccc-----
Confidence                                         4444444 34455566777888888888888888888888887632     


Q ss_pred             CCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcc
Q 026423          127 ESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK-KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPES  201 (238)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~  201 (238)
                            .++.++..|+||||+|+..|+.+++++|++ .|+++ +.+|..|+||||+|+.   .+++++|+++| +|
T Consensus       164 ------~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~-~~~d~~g~t~l~~A~~---~~~~~~Ll~~g-~d  228 (229)
T d1ixva_         164 ------AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY-DLVDNKGAKAEDVALN---EQVKKFFLNNV-VD  228 (229)
T ss_dssp             ------CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCS-CCCCTTSCCTGGGCSC---HHHHHHHHHHC-CC
T ss_pred             ------cccccccccCCchhhhcccccHHHHHHHHHhcCCCC-CCcCCCCCCHHHHHhh---HHHHHHHHHcC-CC
Confidence                  244688999999999999999999999997 48888 7899999999999974   58999999998 54

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.9e-34  Score=208.83  Aligned_cols=183  Identities=21%  Similarity=0.269  Sum_probs=152.8

Q ss_pred             chhhhhhhccccCC--CCCCCCCCCCCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHH
Q 026423            4 RSFEMTEFGTDYKE--PTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEI   81 (238)
Q Consensus         4 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L   81 (238)
                      ++.+++++.++...  ..++.. ...+.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..++.+++++|
T Consensus        20 ~~~~~v~~Ll~~~a~~~~i~~~-~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~~~L   97 (255)
T d1oy3d_          20 QHEPFLDFLLGFSAGHEYLDLQ-NDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLACRVRAHTCACVL   97 (255)
T ss_dssp             TCHHHHHHHHHHHTTSGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHHTTTTCHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCcccccCc-CCCCCCccchHHhhcccccccccccccccc-cccccccchhhhhhhccCchHHHHHH
Confidence            45566666443321  112222 233455899999999999999999999999 88999999999999999999999998


Q ss_pred             HH----------------------------------------------cCccccccCCCCCCcHHHHHHHhCCHHHHHHH
Q 026423           82 LR----------------------------------------------RRDSLLRKNNWKGETPLHIAARVGDPAIVSTI  115 (238)
Q Consensus        82 l~----------------------------------------------~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l  115 (238)
                      ++                                              ..+..++.++..|.||||+|+..++.+++++|
T Consensus        98 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~L  177 (255)
T d1oy3d_          98 LQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL  177 (255)
T ss_dssp             SSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccch
Confidence            65                                              12334455778899999999999999999999


Q ss_pred             HhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHH
Q 026423          116 LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFII  195 (238)
Q Consensus       116 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  195 (238)
                      ++.++....           ..+..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|++.++.+++++|+
T Consensus       178 l~~~~~~~~-----------~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadi-n~~d~~g~t~L~~A~~~~~~~i~~~Ll  245 (255)
T d1oy3d_         178 RDAGADLNK-----------PEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALLRPNPILARLLR  245 (255)
T ss_dssp             HHHTCCTTC-----------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHTSSCHHHHHHHH
T ss_pred             hcccccccc-----------cccccccccccccccccHHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            999876543           35678999999999999999999999999988 789999999999999999999999999


Q ss_pred             hcCCcc
Q 026423          196 DQRPES  201 (238)
Q Consensus       196 ~~~~~~  201 (238)
                      ++| ++
T Consensus       246 ~~G-a~  250 (255)
T d1oy3d_         246 AHG-AP  250 (255)
T ss_dssp             HTT-CC
T ss_pred             HcC-CC
Confidence            999 64

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-33  Score=201.38  Aligned_cols=196  Identities=16%  Similarity=0.144  Sum_probs=162.6

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHh----hhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHH
Q 026423           27 TMDHELLNVLRRGDEHQISLIAG----RMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHI  102 (238)
Q Consensus        27 ~~~~~l~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~  102 (238)
                      .|.||||+||..|+.+++++|++    .|.++ +..+..|.||||+|+..|+.+++++|+ ..+...+.....+.++++.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i-n~~d~~g~TpL~~A~~~~~~~iv~~Ll-~~ga~~~~~~~~~~~~~~~   79 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLV-TAGASPMALDRHGQTAAHL   79 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CccCCCCCccceehhcccccccccccc-ccccccccccccccccccc
Confidence            35679999999999999999886    67888 888999999999999999999999999 4777788888899999999


Q ss_pred             HHHhCCHHHHHHHHhhCccccCCCCCCC--------------------------cccccccCCCCCcHHHHHHHcCCHHH
Q 026423          103 AARVGDPAIVSTILKYAPAITNGTESEP--------------------------ESLLRITDDEGNTPLHNAVRNKHENV  156 (238)
Q Consensus       103 a~~~~~~~~~~~ll~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~l~~a~~~~~~~~  156 (238)
                      |...++.++++.+...............                          ..........+.++++.|+..+...+
T Consensus        80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  159 (228)
T d1k1aa_          80 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM  159 (228)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhh
Confidence            9999999999988776543322111110                          11122345678889999999999999


Q ss_pred             HHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhH
Q 026423          157 VRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPM  226 (238)
Q Consensus       157 ~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~  226 (238)
                      ++++++.|... ...+..|.||||+|+..|+.+++++|+++| ++++.+|.+|+||||+|+++|+.++++
T Consensus       160 ~~~~~~~~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~G-ad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         160 VQLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVRSG-ADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhhhhcccc-ccccccCcchHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            99999988877 678888999999999999999999999888 889999999999999999988887764

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-31  Score=209.60  Aligned_cols=201  Identities=22%  Similarity=0.247  Sum_probs=166.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCH
Q 026423           30 HELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDP  109 (238)
Q Consensus        30 ~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~  109 (238)
                      ||||.||..|+.++|++|++.|+++ +..|..|.||||+|+..|+.+++++|++ .+++++.++..|.||||+|+..|+.
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~i-n~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~gadi~~~~~~g~t~L~~A~~~g~~   79 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQ-NKAKVNAKAKDDQTPLHCAARIGHT   79 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCS-CCSSSCCCCHHHHHHHHTCHHHHHHHHH-HTCCSSCCCTTSCCHHHHHHHHTCH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-CcCCCCCCCCCCCCHHHHHHHcCCH
Confidence            4899999999999999999999999 8899999999999999999999999994 6778999999999999999999999


Q ss_pred             HHHHHHHhhCccccCCCCCCC---------------------cccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccc
Q 026423          110 AIVSTILKYAPAITNGTESEP---------------------ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPL  168 (238)
Q Consensus       110 ~~~~~ll~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~  168 (238)
                      +++++|+..............                     .......+..+.++++.|+..++.+++++|+++|+++ 
T Consensus        80 ~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~-  158 (408)
T d1n11a_          80 NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-  158 (408)
T ss_dssp             HHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-
T ss_pred             HHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCC-
Confidence            999999988765543332221                     2234456677888899999999999999999888877 


Q ss_pred             cccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccc
Q 026423          169 GYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKC  234 (238)
Q Consensus       169 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~  234 (238)
                      +..+..|.+||++|+..|+.+++++|+.+| ++++..+..|.||++.+....+.++...++..+..
T Consensus       159 ~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~  223 (408)
T d1n11a_         159 NAAGKNGLTPLHVAVHHNNLDIVKLLLPRG-GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS  223 (408)
T ss_dssp             TCCCSSCCCHHHHHHHTTCHHHHHHHGGGT-CCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CcCCCcCchHHHHHHHcCCHHHHHHHHhcC-CcccccCCCCCCcchhhhccchhhhhhhhhhcccc
Confidence            677888889999999989999999998887 77777777777777777766666666666555443

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=4.6e-32  Score=193.84  Aligned_cols=183  Identities=19%  Similarity=0.208  Sum_probs=136.6

Q ss_pred             HHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHH
Q 026423           31 ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPA  110 (238)
Q Consensus        31 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~  110 (238)
                      |||+||..|+.+++++|++.|+++ +..+..+.++++.++..++.....................+.++.+.+.......
T Consensus        26 ~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (209)
T d1ot8a_          26 SLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEG  104 (209)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTT
T ss_pred             HHHHHHHcCCHHHHHHHHhhcccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence            566666666666666666555555 5555555555555555555555444443333333334444555555555555555


Q ss_pred             HHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHH
Q 026423          111 IVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDI  190 (238)
Q Consensus       111 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  190 (238)
                      ..+.|...+++            ++..+..|.|||++++..+...+++.+++.+.++ +..|..|.||||+|+..|+.++
T Consensus       105 ~~~~L~~~~~~------------~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~-~~~d~~g~TpL~~A~~~g~~~~  171 (209)
T d1ot8a_         105 MVEDLITADAD------------INAADNSGKTALHWAAAVNNTEAVNILLMHHANR-DAQDDKDETPLFLAAREGSYEA  171 (209)
T ss_dssp             HHHHHHHTTCC------------TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHH
T ss_pred             hhhhhhhhccc------------ccccCCCCCCcchhhcccCcceeeeeeccccccc-cccccccccccchhccccHHHH
Confidence            55555555544            3467889999999999999999999999999887 7889999999999999999999


Q ss_pred             HHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHh
Q 026423          191 ACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIF  228 (238)
Q Consensus       191 ~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  228 (238)
                      +++|++.| ++++.+|..|+||||+|+++|+.+++++|
T Consensus       172 v~~Ll~~g-ad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         172 SKALLDNF-ANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHCC-CCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            99999999 99999999999999999999999999986

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-32  Score=186.80  Aligned_cols=152  Identities=26%  Similarity=0.360  Sum_probs=76.9

Q ss_pred             HHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHH
Q 026423           31 ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPA  110 (238)
Q Consensus        31 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~  110 (238)
                      +||.||..|+.++|++|+++|+++ +..|..|.||||+|+ .++.+++++|+ ..+.+++.++..+.+|++.++..+..+
T Consensus         4 ~Lh~Aa~~g~~~~v~~Ll~~g~d~-n~~d~~g~TpL~~A~-~~~~ei~~~Ll-~~~a~~~~~~~~~~~~l~~~~~~~~~~   80 (156)
T d1ihba_           4 ELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMK-LGNPEIARRLL-LRGANPDLKDRTGFAVIHDAARAGFLD   80 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCC-SSCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCc-CccCCcccccccccc-ccccccccccc-ccccccccccccCcccccccccccccc
Confidence            455555555555555555555555 555555555555543 35555555555 334444455555555555555555555


Q ss_pred             HHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHH
Q 026423          111 IVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDI  190 (238)
Q Consensus       111 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  190 (238)
                      .++.+++.+....            ..+..+.+|+++|+..++.+++++|+++++...+.++..|+||||+|+..++.++
T Consensus        81 ~~~~l~~~~~~~~------------~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~i  148 (156)
T d1ihba_          81 TLQTLLEFQADVN------------IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV  148 (156)
T ss_dssp             HHHHHHHTTCCTT------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             ccccccccccccc------------ccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHH
Confidence            5555555443321            2344444444444444444444444444443334444444444444444444444


Q ss_pred             HHHHHhc
Q 026423          191 ACFIIDQ  197 (238)
Q Consensus       191 ~~~Ll~~  197 (238)
                      +++|+++
T Consensus       149 v~~Ll~~  155 (156)
T d1ihba_         149 VSLMQAN  155 (156)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            4444443

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.8e-31  Score=182.11  Aligned_cols=154  Identities=17%  Similarity=0.220  Sum_probs=144.6

Q ss_pred             hHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCc
Q 026423           64 TVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNT  143 (238)
Q Consensus        64 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (238)
                      ++||+||..|+.+++++|+ +.+.+++.++..|.||||+|+ .++.+++++|+++++++.            ..+..+.+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll-~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~------------~~~~~~~~   68 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLL-QNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPD------------LKDRTGFA   68 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHT-TSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTT------------CCCTTSCC
T ss_pred             HHHHHHHHcCCHHHHHHHH-HCCCCcCccCCcccccccccc-cccccccccccccccccc------------cccccCcc
Confidence            8999999999999999999 577889999999999999886 789999999999987754            67888999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcc
Q 026423          144 PLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYG  223 (238)
Q Consensus       144 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~  223 (238)
                      +++.++..+....++++++.+... +..+..|.+|+++|++.++.+++++|+++++.+.+.+|..|.||||+|++.++.+
T Consensus        69 ~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~  147 (156)
T d1ihba_          69 VIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE  147 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             cccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHH
Confidence            999999999999999999999887 7889999999999999999999999999997789999999999999999999999


Q ss_pred             hhHHhhhcc
Q 026423          224 EPMIFISLN  232 (238)
Q Consensus       224 ~~~~L~~~g  232 (238)
                      ++++|+++|
T Consensus       148 iv~~Ll~~G  156 (156)
T d1ihba_         148 VVSLMQANG  156 (156)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHhcC
Confidence            999999998

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-31  Score=182.65  Aligned_cols=152  Identities=22%  Similarity=0.280  Sum_probs=105.6

Q ss_pred             hHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCc
Q 026423           64 TVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNT  143 (238)
Q Consensus        64 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (238)
                      +.|+.||..|+.+++++|+++.+.+++.+|..|+||||+|+ .++.+++++|++++.++.            ..+..+.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~------------~~~~~~~~   70 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN------------VQDTSGTS   70 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTT------------CCCTTSCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccc------------cccccccc
Confidence            34667777777777777776666666677777777777665 366677777776665533            35556677


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcc
Q 026423          144 PLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYG  223 (238)
Q Consensus       144 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~  223 (238)
                      |++.++..++.++++++++.|+++ +..+..|.||||+|++.|+.+++++|+ .| ++++.+|.+|+||||+|+.+|+.+
T Consensus        71 ~l~~~~~~~~~~~~~~~l~~~~~~-n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~-~~~~~~d~~G~TpL~~A~~~g~~~  147 (156)
T d1bd8a_          71 PVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLA-AE-SDLHRRDARGLTPLELALQRGAQD  147 (156)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHH-TT-SCTTCCCTTSCCHHHHHHHSCCHH
T ss_pred             cccccccccccccccccccccccc-ccccCCCCeeecccccccccccccccc-cc-ccccccCCCCCCHHHHHHHcCCHH
Confidence            777777777777777777777665 566777777777777777777777666 34 667777777777777777777777


Q ss_pred             hhHHhhhc
Q 026423          224 EPMIFISL  231 (238)
Q Consensus       224 ~~~~L~~~  231 (238)
                      ++++|++|
T Consensus       148 iv~~Ll~h  155 (156)
T d1bd8a_         148 LVDILQGH  155 (156)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhh
Confidence            77777765

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=4.4e-32  Score=201.89  Aligned_cols=194  Identities=15%  Similarity=0.158  Sum_probs=158.4

Q ss_pred             HHHHHHH-cCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHH-------cCccccccCCCCCCcHHHH
Q 026423           31 ELLNVLR-RGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILR-------RRDSLLRKNNWKGETPLHI  102 (238)
Q Consensus        31 ~l~~A~~-~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~-------~~~~~~~~~~~~g~~~l~~  102 (238)
                      |||.+++ .|..++++.|.+.+.+. .. +.+|.||||+||..|+.+++++|+.       ..|++++.+|..|.||||+
T Consensus         3 p~~~~~~~~~~~~~~~~l~~~~~n~-~~-~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~   80 (277)
T d2fo1e1           3 PIKLHTEAAGSYAITEPITRESVNI-ID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLML   80 (277)
T ss_dssp             CCHHHHHHHSSSCCCSCCSTTTTTT-CC-CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHH
T ss_pred             hHHHHHHhCCCHHHHHHHHhcCCCc-CC-CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecc
Confidence            5665544 46777777777888776 22 3469999999999999999988864       3467889999999999999


Q ss_pred             HHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCc----------------
Q 026423          103 AARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRI----------------  166 (238)
Q Consensus       103 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~----------------  166 (238)
                      |+..|+.+++++|+++|+++.            ..+..|.||+++|+..++.++++++...+..                
T Consensus        81 A~~~g~~~iv~~Ll~~Gad~n------------~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  148 (277)
T d2fo1e1          81 AVLARRRRLVAYLMKAGADPT------------IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALM  148 (277)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSC------------CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHH
T ss_pred             ccccccccccccccccccccc------------cccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHH
Confidence            999999999999999998754            5677888999999888887777766443100                


Q ss_pred             ------------------------------cccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHH
Q 026423          167 ------------------------------PLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSA  216 (238)
Q Consensus       167 ------------------------------~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A  216 (238)
                                                    .....+..|.||||.++..++.+++++++...+.+.+.+|..|+||||+|
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A  228 (277)
T d2fo1e1         149 IVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLA  228 (277)
T ss_dssp             HHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHH
T ss_pred             HHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHH
Confidence                                          00122346899999999999999999877666688999999999999999


Q ss_pred             HHhcCcchhHHhhhcccccCCC
Q 026423          217 VMRQNYGEPMIFISLNKCLSIV  238 (238)
Q Consensus       217 ~~~~~~~~~~~L~~~g~~~~~~  238 (238)
                      +..|+.+++++|+++|++++.+
T Consensus       229 ~~~g~~~iv~~Ll~~gadin~~  250 (277)
T d2fo1e1         229 AQEGRIEVVMYLIQQGASVEAV  250 (277)
T ss_dssp             HHHTCHHHHHHHHHTTCCSSCC
T ss_pred             HHcCCHHHHHHHHHCcCCCCCc
Confidence            9999999999999999999863

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=5.3e-30  Score=192.00  Aligned_cols=188  Identities=19%  Similarity=0.186  Sum_probs=151.1

Q ss_pred             HcCCHHHHHHHHhhhhccccc--------cCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCC
Q 026423           37 RRGDEHQISLIAGRMQNIFST--------MSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGD  108 (238)
Q Consensus        37 ~~~~~~~v~~Ll~~~~~~~~~--------~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~  108 (238)
                      +....+.++.+.....+....        .+..+.|+|+.||..|+.++|++|+ +.|.+++.++..|.||||+|+..|+
T Consensus         7 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll-~~Gadvn~~d~~G~T~L~~A~~~g~   85 (291)
T d1s70b_           7 KQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLL-ERGADINYANVDGLTALHQACIDDN   85 (291)
T ss_dssp             HHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHH-HHCCCTTCBCTTCCBHHHHHHHTTC
T ss_pred             hHhhHHHHHHHHhCcccccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHH-HCCCCCCccCCCCCcHHHHHHhcCC
Confidence            344455666666554433111        1223569999999999999999999 5667899999999999999999999


Q ss_pred             HHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCcc---------------------
Q 026423          109 PAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP---------------------  167 (238)
Q Consensus       109 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~---------------------  167 (238)
                      .+++++|++++.+..            ..+..+.+||+.++..++.++++.|+++|+..                     
T Consensus        86 ~eiv~~Ll~~~~~~~------------~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~  153 (291)
T d1s70b_          86 VDMVKFLVENGANIN------------QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEE  153 (291)
T ss_dssp             HHHHHHHHHTTCCTT------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHH
T ss_pred             ceeeeeecccccccc------------cccccccccccccccccccchhhcccccCcccccccccCccccccccccccch
Confidence            999999999987644            34556677777777777777777777655332                     


Q ss_pred             --------------------------------------ccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCC
Q 026423          168 --------------------------------------LGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEE  209 (238)
Q Consensus       168 --------------------------------------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g  209 (238)
                                                            ....+..|.||||+|+..|+.+++++|++.| ++++.++..|
T Consensus       154 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g-~din~~~~~g  232 (291)
T d1s70b_         154 LLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYDG  232 (291)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTC
T ss_pred             hccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccce-ecccccccCC
Confidence                                                  1223456889999999999999999999999 9999999999


Q ss_pred             CcHHHHHHHhcCcchhHHhhhcccccCCC
Q 026423          210 LTLLHSAVMRQNYGEPMIFISLNKCLSIV  238 (238)
Q Consensus       210 ~t~l~~A~~~~~~~~~~~L~~~g~~~~~~  238 (238)
                      +||||+|+..|+.+++++|+++|++++++
T Consensus       233 ~TpL~~A~~~g~~~iv~lLl~~Gadv~~~  261 (291)
T d1s70b_         233 WTPLHAAAHWGKEEACRILVENLCDMEAV  261 (291)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence            99999999999999999999999999864

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=5.5e-30  Score=174.12  Aligned_cols=148  Identities=25%  Similarity=0.341  Sum_probs=68.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCH
Q 026423           30 HELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDP  109 (238)
Q Consensus        30 ~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~  109 (238)
                      +||+.|++.|+.++|++|+++|+++ + .+..|.||||+|+..++.+++..++ ............+.++++.++...+.
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~-~-~~~~g~t~L~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLL-RAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHH-TTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCc-c-cccCCCccccccccccccccccccc-cccccccccccccccccccccccccc
Confidence            3455555555555555555555543 2 3444555555555555555555444 22222233333444444444444455


Q ss_pred             HHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHH
Q 026423          110 AIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTD  189 (238)
Q Consensus       110 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~  189 (238)
                      ++++++..++++..            .++..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+
T Consensus        81 ~~~~~l~~~~~~~~------------~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~-~~~d~~g~Tpl~~A~~~g~~e  147 (153)
T d1awcb_          81 NIVEVLLKHGADVN------------AKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNED  147 (153)
T ss_dssp             HHHHHHHTTTCCTT------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHH
T ss_pred             eeeecccccCCccc------------cccccCchHHHhhhhcchhheeeeccccccCC-cccCCCCCCHHHHHHHcCCHH
Confidence            54444444443322            23444444444444444444444444444444 344444444444444444444


Q ss_pred             HHHH
Q 026423          190 IACF  193 (238)
Q Consensus       190 ~~~~  193 (238)
                      ++++
T Consensus       148 iv~l  151 (153)
T d1awcb_         148 LAEI  151 (153)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            4443

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.3e-30  Score=173.74  Aligned_cols=150  Identities=21%  Similarity=0.349  Sum_probs=136.0

Q ss_pred             HHHHHHHcCCHHHHHHHHhh-hhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCH
Q 026423           31 ELLNVLRRGDEHQISLIAGR-MQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDP  109 (238)
Q Consensus        31 ~l~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~  109 (238)
                      .|+.||..|+.++|+.|++. +.++ +..|..|.||||+|+. ++.+++++|++ .+.+++..+..|.+|++.++..++.
T Consensus         5 ~L~~Aa~~g~~~~vk~lL~~~~~~~-n~~d~~g~t~L~~A~~-~~~~~v~~Ll~-~~~~~~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           5 RLSGAAARGDVQEVRRLLHRELVHP-DALNRFGKTALQVMMF-GSTAIALELLK-QGASPNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCCT-TCCCTTSCCHHHHSCT-TCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCC-CccCCCCCcccccccc-ccccccccccc-ccccccccccccccccccccccccc
Confidence            59999999999999999986 6677 8889999999999875 88999999995 5667888899999999999999999


Q ss_pred             HHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHH
Q 026423          110 AIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTD  189 (238)
Q Consensus       110 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~  189 (238)
                      +++++++++++++.            .++..|.||||+|++.|+.+++++|+ .|+++ +.+|..|+||||+|++.|+.+
T Consensus        82 ~~~~~~l~~~~~~n------------~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~-~~~d~~G~TpL~~A~~~g~~~  147 (156)
T d1bd8a_          82 DTLKVLVEHGADVN------------VPDGTGALPIHLAVQEGHTAVVSFLA-AESDL-HRRDARGLTPLELALQRGAQD  147 (156)
T ss_dssp             HHHHHHHHTTCCSC------------CCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCT-TCCCTTSCCHHHHHHHSCCHH
T ss_pred             cccccccccccccc------------cccCCCCeeecccccccccccccccc-ccccc-cccCCCCCCHHHHHHHcCCHH
Confidence            99999999987643            57889999999999999999999887 57776 788999999999999999999


Q ss_pred             HHHHHHhc
Q 026423          190 IACFIIDQ  197 (238)
Q Consensus       190 ~~~~Ll~~  197 (238)
                      ++++|+++
T Consensus       148 iv~~Ll~h  155 (156)
T d1bd8a_         148 LVDILQGH  155 (156)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhh
Confidence            99999975

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.3e-29  Score=171.02  Aligned_cols=150  Identities=19%  Similarity=0.257  Sum_probs=136.6

Q ss_pred             chHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCC
Q 026423           63 NTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGN  142 (238)
Q Consensus        63 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (238)
                      .|||+.|++.|+.+++++||+. +++.+ .+..|+||||+|+..++.++++.++.......            .....+.
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~-ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~------------~~~~~~~   68 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMAN-GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD------------ARTKVDR   68 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHH-TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT------------CCCTTCC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHc-CCCcc-cccCCCcccccccccccccccccccccccccc------------ccccccc
Confidence            5899999999999999999965 45555 68899999999999999999999998775543            3566788


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCc
Q 026423          143 TPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNY  222 (238)
Q Consensus       143 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~  222 (238)
                      ++++.++...+.+.+++++..+++. ...+..|.||||+|+..|+.+++++|++.| ++++.+|.+|.||||+|+..|+.
T Consensus        69 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~~g-ad~~~~d~~g~Tpl~~A~~~g~~  146 (153)
T d1awcb_          69 TPLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGNE  146 (153)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             cccccccccccceeeecccccCCcc-ccccccCchHHHhhhhcchhheeeeccccc-cCCcccCCCCCCHHHHHHHcCCH
Confidence            8999999999999999999999988 688999999999999999999999999999 99999999999999999999999


Q ss_pred             chhHHh
Q 026423          223 GEPMIF  228 (238)
Q Consensus       223 ~~~~~L  228 (238)
                      |++++|
T Consensus       147 eiv~lL  152 (153)
T d1awcb_         147 DLAEIL  152 (153)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            999976

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=3.8e-29  Score=178.49  Aligned_cols=183  Identities=21%  Similarity=0.243  Sum_probs=163.2

Q ss_pred             HHHHHHHHhhhhccccc-cCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhC
Q 026423           41 EHQISLIAGRMQNIFST-MSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYA  119 (238)
Q Consensus        41 ~~~v~~Ll~~~~~~~~~-~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~  119 (238)
                      -++|++|+++|+++ +. .|.+|.||||+||..|+.+++++|+ ..+..++.++..+.++++.++..++...........
T Consensus         2 ~~~v~~Ll~~g~di-n~~~d~~G~t~L~~A~~~g~~e~v~~Ll-~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (209)
T d1ot8a_           2 AQVISDLLAQGAEL-NATMDKTGETSLHLAARFARADAAKRLL-DAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNR   79 (209)
T ss_dssp             HHHHHHHHHHHHHH-HHHHHHHCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCT
T ss_pred             HHHHHHHHHCCCCc-CcCcCCCCCCHHHHHHHcCCHHHHHHHH-hhcccccccccccccccccccccccccccccccccc
Confidence            47999999999999 55 6899999999999999999999999 577778899999999999999999988887776654


Q ss_pred             ccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 026423          120 PAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRP  199 (238)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~  199 (238)
                      .....           .....+.++.+.+.........+.|...++++ +..+..|.||++.++..+..++++.+++.+ 
T Consensus        80 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~-  146 (209)
T d1ot8a_          80 ATNLN-----------ARMHDGTTPLILAARLAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEAVNILLMHH-  146 (209)
T ss_dssp             TCCTT-----------CCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTT-
T ss_pred             ccccc-----------cccccccccccccccccchhhhhhhhhhcccc-cccCCCCCCcchhhcccCcceeeeeecccc-
Confidence            33221           34567888999999999999999999999887 678999999999999999999999999998 


Q ss_pred             cccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCCC
Q 026423          200 ESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV  238 (238)
Q Consensus       200 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~~  238 (238)
                      .+++.+|..|.||||+|+..|+.+++++|+++|++++++
T Consensus       147 ~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~  185 (209)
T d1ot8a_         147 ANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREIT  185 (209)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             ccccccccccccccchhccccHHHHHHHHHHCCCCCCCc
Confidence            899999999999999999999999999999999999864

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.96  E-value=1.3e-31  Score=205.10  Aligned_cols=194  Identities=14%  Similarity=0.084  Sum_probs=149.1

Q ss_pred             CCCHHHHHHHHcCCHHHHHH---HHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCC--CCCCcHHH
Q 026423           27 TMDHELLNVLRRGDEHQISL---IAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNN--WKGETPLH  101 (238)
Q Consensus        27 ~~~~~l~~A~~~~~~~~v~~---Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~--~~g~~~l~  101 (238)
                      .+.++|++|+.+|+.+++++   |++.|+++ +..+..|.||||+||..|+.+++++|++ .+.+++..+  ..|.||||
T Consensus        89 ~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~i-n~~~~~g~taL~~Aa~~G~~~~v~~Ll~-~g~~~~~~~~~~~g~t~L~  166 (346)
T d2ajaa1          89 KSEVICFVAAITGCSSALDTLCLLLTSDEIV-KVIQAENYQAFRLAAENGHLHVLNRLCE-LAPTEIMAMIQAENYHAFR  166 (346)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCSSC-C--CHHHHHHHHHHHHTTCHHHHHHHHH-SCTTTHHHHHSHHHHHHHH
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHHHHhCCCcc-cccCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCccccccccCCCChhH
Confidence            45678999999999887765   78899999 8889999999999999999999999995 455555543  46899999


Q ss_pred             HHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccc-----------
Q 026423          102 IAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGY-----------  170 (238)
Q Consensus       102 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~-----------  170 (238)
                      +|+..|+.+++++|++.++....         .+..+..+.+|++.|++.|+.+++++|++.|++....           
T Consensus       167 ~Aa~~g~~~iv~~Ll~~~~~~~~---------~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~  237 (346)
T d2ajaa1         167 LAAENGHLHVLNRLCELAPTEAT---------AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKY  237 (346)
T ss_dssp             HHHHTTCHHHHHHHHHSCGGGHH---------HHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTT
T ss_pred             HHHHHhhHHHHHHHHHcCCcccc---------cccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHh
Confidence            99999999999999999865321         1123445677888899999999999999876432100           


Q ss_pred             ---------------------cCCC----------------CCCHHHHHHHcCcHHHHHHHHhcCCcc----cccCCCCC
Q 026423          171 ---------------------LNNA----------------EQTPLSIAIDSSLTDIACFIIDQRPES----LNHRLPEE  209 (238)
Q Consensus       171 ---------------------~~~~----------------g~t~l~~a~~~~~~~~~~~Ll~~~~~~----~~~~~~~g  209 (238)
                                           ....                +.++++.|+..+..+++++|++.+...    .+..+.+|
T Consensus       238 ~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g  317 (346)
T d2ajaa1         238 VNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDA  317 (346)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCC
T ss_pred             hhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCC
Confidence                                 0001                135677777788999999999877322    23344578


Q ss_pred             CcHHHHHHHhcCcchhHHhhhc
Q 026423          210 LTLLHSAVMRQNYGEPMIFISL  231 (238)
Q Consensus       210 ~t~l~~A~~~~~~~~~~~L~~~  231 (238)
                      +||||+|+++|+.+++++|++.
T Consensus       318 ~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         318 NELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             CHHHHHHHHHTCTTHHHHHTTS
T ss_pred             CcHHHHHHHcCcHHHHHHHhCC
Confidence            9999999999999999999986

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.8e-28  Score=174.53  Aligned_cols=177  Identities=19%  Similarity=0.211  Sum_probs=152.5

Q ss_pred             CCchHHHHHHHcCCcchHHHHHH---cCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCC-------
Q 026423           61 RGNTVLHMAIRFRNHKVIPEILR---RRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP-------  130 (238)
Q Consensus        61 ~g~t~L~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~-------  130 (238)
                      +|.||||+||..|+.++++.|++   ..+.+++.+|..|+||||+|+..|+.+++++|+++++........+.       
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            69999999999999999999985   46778999999999999999999999999999999987655443321       


Q ss_pred             ------------------cccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHH
Q 026423          131 ------------------ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIAC  192 (238)
Q Consensus       131 ------------------~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  192 (238)
                                        ....+.......++++.+.........+.+.....+........+.+|++.|+..+...+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence                              11223345667788888888888888888888777765667778999999999999999999


Q ss_pred             HHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCCC
Q 026423          193 FIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV  238 (238)
Q Consensus       193 ~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~~  238 (238)
                      .+++.+ .+.+.+|..|.|||++|+.+|+.+++++|+++|+|++++
T Consensus       162 ~~~~~~-~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~  206 (228)
T d1k1aa_         162 LLLQHG-ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK  206 (228)
T ss_dssp             HHHHTT-CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred             hhhhhc-cccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence            999998 889999999999999999999999999999999999863

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.2e-28  Score=175.21  Aligned_cols=159  Identities=20%  Similarity=0.206  Sum_probs=142.3

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcC-----ccccccCCCCCCcHHH
Q 026423           27 TMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR-----DSLLRKNNWKGETPLH  101 (238)
Q Consensus        27 ~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~-----~~~~~~~~~~g~~~l~  101 (238)
                      .+.||||+|+..|+.+++++|++.|+++ +..+..|.|||++|+..++.++++.++...     ..........|.||||
T Consensus        38 ~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~  116 (221)
T d1iknd_          38 LQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH  116 (221)
T ss_dssp             TCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHH
T ss_pred             CCCccccccccccccccccccccccccc-cccccccccccccccccccccccchhhhhcccccccccccccccccchhhh
Confidence            4556899999999999999999999999 889999999999999999999999999642     2334445567899999


Q ss_pred             HHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHH
Q 026423          102 IAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI  181 (238)
Q Consensus       102 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~  181 (238)
                      .|+..++.+++++++..+.....           ..+..|.||||+|++.|+.+++++|+++|+++ +.++..|+||||+
T Consensus       117 ~a~~~~~~~~~~~l~~~~~~~~~-----------~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~-~~~~~~G~tpl~~  184 (221)
T d1iknd_         117 LASIHGYLGIVELLVSLGADVNA-----------QEPCNGRTALHLAVDLQNPDLVSLLLKCGADV-NRVTYQGYSPYQL  184 (221)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTC-----------CCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCS-CCCCTTCCCGGGG
T ss_pred             HHhhcCChhheeeecccCccccc-----------ccccCCCCccccccccccHHHHHHHHhcCCcc-cccCCCCCCHHHH
Confidence            99999999999999999877543           24567999999999999999999999999997 8899999999999


Q ss_pred             HHHcCcHHHHHHHHhcC
Q 026423          182 AIDSSLTDIACFIIDQR  198 (238)
Q Consensus       182 a~~~~~~~~~~~Ll~~~  198 (238)
                      |+..++.+++++|++..
T Consensus       185 A~~~~~~~~~~~l~~~~  201 (221)
T d1iknd_         185 TWGRPSTRIQQQLGQLT  201 (221)
T ss_dssp             CTTSSCHHHHHHHHTTS
T ss_pred             HHHCCCHHHHHHHHHcC
Confidence            99999999999999887

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-27  Score=178.34  Aligned_cols=189  Identities=17%  Similarity=0.158  Sum_probs=154.6

Q ss_pred             chhhhhhhccccCCCCCCCCCCCCCCHHHHHHHHcCCHHHHHHHHhhhhcc-----------------------------
Q 026423            4 RSFEMTEFGTDYKEPTMDQELPTTMDHELLNVLRRGDEHQISLIAGRMQNI-----------------------------   54 (238)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~-----------------------------   54 (238)
                      +++|++++.++.. .+++..+...+.||||+|+..|+.+++++|++.+...                             
T Consensus        16 ~~~e~vk~Ll~~G-~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (285)
T d1wdya_          16 EDVDLVQQLLEGG-ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK   94 (285)
T ss_dssp             TCHHHHHHHHHTT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHCC-CCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhhh
Confidence            5677887765542 3344444556677999999999999999999754311                             


Q ss_pred             ----------------------------------------------ccccCCCCchHHHHHHHcCCcchHHHHHHcCccc
Q 026423           55 ----------------------------------------------FSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSL   88 (238)
Q Consensus        55 ----------------------------------------------~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~   88 (238)
                                                                    .......|.||||+|+..|+.+++++|++..+.+
T Consensus        95 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  174 (285)
T d1wdya_          95 GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD  174 (285)
T ss_dssp             TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC
T ss_pred             cccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCC
Confidence                                                          0011223788999999999999999999888889


Q ss_pred             cccCCCCCCcHHHHHHHh----CCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHc-
Q 026423           89 LRKNNWKGETPLHIAARV----GDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK-  163 (238)
Q Consensus        89 ~~~~~~~g~~~l~~a~~~----~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~-  163 (238)
                      ++..+..|.+++..+...    +..+++++|+++|+++.            .++..|.||||.|++.|+.+++++|++. 
T Consensus       175 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n------------~~~~~g~t~L~~a~~~~~~~~v~~lL~~~  242 (285)
T d1wdya_         175 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN------------VRGERGKTPLILAVEKKHLGLVQRLLEQE  242 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSS------------CCCTTSCCHHHHHHHTTCHHHHHHHHHSS
T ss_pred             cccccCCCCcccccccccccchHHHHHHHHHHHCCCCCC------------ccCCCCCCccchhhhcCcHHHHHHHHHcC
Confidence            999999999988876654    34578999999998754            5788999999999999999999999986 


Q ss_pred             CCccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCC
Q 026423          164 DRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLP  207 (238)
Q Consensus       164 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~  207 (238)
                      |+++ +..|.+|.||||+|++.|+.+++++|+++| +++|.+|.
T Consensus       243 g~di-n~~d~~G~TpL~~A~~~~~~eiv~~Ll~~G-Ad~n~~d~  284 (285)
T d1wdya_         243 HIEI-NDTDSDGKTALLLAVELKLKKIAELLCKRG-ASTDCGDL  284 (285)
T ss_dssp             SCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHS-SCSCCSSC
T ss_pred             CCCC-cCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCcccC
Confidence            6665 889999999999999999999999999999 99998874

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=7.9e-28  Score=180.84  Aligned_cols=176  Identities=13%  Similarity=0.058  Sum_probs=121.1

Q ss_pred             CCCCHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCC---cchHHHHHHcCccccccCCCCCCcHHHH
Q 026423           26 TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRN---HKVIPEILRRRDSLLRKNNWKGETPLHI  102 (238)
Q Consensus        26 ~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~---~~~~~~Ll~~~~~~~~~~~~~g~~~l~~  102 (238)
                      ..+.||||+|+..|+.++|++|+++|+++ +..+..|.||||.||..++   ...+..+++........++..|+||||.
T Consensus       105 ~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh~  183 (301)
T d1sw6a_         105 EHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHH  183 (301)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHHH
Confidence            44566999999999999999999999999 8899999999999998765   3344444444445567788899999998


Q ss_pred             HHHhCC----HHH--------HHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHH-----HHHHHcCC
Q 026423          103 AARVGD----PAI--------VSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV-----RMLVKKDR  165 (238)
Q Consensus       103 a~~~~~----~~~--------~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-----~~ll~~~~  165 (238)
                      ++..+.    ...        +.++.+.+....           ......+.++++.+........+     ..++... 
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  251 (301)
T d1sw6a_         184 IIITSGMTGCSAAAKYYLDILMGWIVKKQNRPI-----------QSGTNEKESKPNDKNGERKDSILENLDLKWIIANM-  251 (301)
T ss_dssp             HHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCE-----------EEC----------------CHHHHHCSHHHHHHHT-
T ss_pred             HHHHhCccccHHHHHHHHHHHHHHHHhcCCcch-----------hcccccccchhHHHHhcchHHHHHHHhhHHHHhcC-
Confidence            886543    233        334444442221           12233444444444433332222     2223322 


Q ss_pred             ccccccCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHH
Q 026423          166 IPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAV  217 (238)
Q Consensus       166 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~  217 (238)
                        ++..|..|+||||+|++.|+.+++++|++.| ++++.+|..|+|||++|+
T Consensus       252 --in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~G-Ad~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         252 --LNAQDSNGDTCLNIAARLGNISIVDALLDYG-ADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             --TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTT-CCTTCCCTTSCCGGGGTC
T ss_pred             --ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHcC
Confidence              3678999999999999999999999999998 999999999999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.3e-27  Score=156.43  Aligned_cols=120  Identities=15%  Similarity=0.099  Sum_probs=109.7

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCC
Q 026423           96 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE  175 (238)
Q Consensus        96 g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g  175 (238)
                      +.++||+|+..|+.+++++|+++|+++.            ..+..|.||+|.|+ .|+.+++++|+++|+++ +..+..+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n------------~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~   68 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPN------------APNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPAT   68 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTT------------CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTT
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccc------------cccccccccccccc-ccccccccccccccccc-ccccccc
Confidence            4689999999999999999999998754            57889999999764 79999999999999988 6677766


Q ss_pred             C-CHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhh
Q 026423          176 Q-TPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFIS  230 (238)
Q Consensus       176 ~-t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  230 (238)
                      . ||||+|++.|+.+++++|++.| ++++.+|..|+||||+|+++|+.+++++|++
T Consensus        69 ~~~~L~~A~~~g~~~~v~~Ll~~g-a~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          69 LTRPVHDAAREGFLDTLVVLHRAG-ARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHT-CCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccccccc-cccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            5 6999999999999999999998 9999999999999999999999999999986

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=8.3e-28  Score=155.63  Aligned_cols=116  Identities=17%  Similarity=0.205  Sum_probs=105.7

Q ss_pred             CcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCC
Q 026423           97 ETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQ  176 (238)
Q Consensus        97 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~  176 (238)
                      .|||.+|++.|+.+++++|+++|+++.            ..+..|.||||+|+..|+.+++++|++.|+++ +..+..|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n------------~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~   69 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVN------------RTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHI   69 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCC------------CCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCS
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccc------------ccccccccccccccccccccccccccccccee-eecccccc
Confidence            479999999999999999999997754            57889999999999999999999999999988 78899999


Q ss_pred             CHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhh
Q 026423          177 TPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFIS  230 (238)
Q Consensus       177 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  230 (238)
                      ||||+|+..|+.+++++|+++| ++++.+|..|.||||+|    ..+.++.|++
T Consensus        70 tpLh~A~~~~~~~~v~~Ll~~G-ad~~~~d~~G~t~l~~a----~~~~i~~LL~  118 (118)
T d1myoa_          70 TPLLSAVYEGHVSCVKLLLSKG-ADKTVKGPDGLTALEAT----DNQAIKALLQ  118 (118)
T ss_dssp             CHHHHHHTTTCCHHHHHHHTTC-CCSSSSSSSTCCCCCTC----SSTTTGGGGC
T ss_pred             cchhhhhhcCchhhhhhhhccc-ccceeeCCCCCCHHHHH----hHHHHHHhcC
Confidence            9999999999999999999999 99999999999999988    3355666653

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.8e-27  Score=152.62  Aligned_cols=119  Identities=15%  Similarity=0.209  Sum_probs=71.4

Q ss_pred             chHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCC-
Q 026423           63 NTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEG-  141 (238)
Q Consensus        63 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~-  141 (238)
                      .++||+|+..|+.+++++|+ +.+.+++.++..|.||+|+|+ .|+.+++++|+++|+++.            ..+..+ 
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll-~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~------------~~~~~~~   69 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALL-EAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN------------CADPATL   69 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHH-TTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC------------CCCTTTC
T ss_pred             hhHHHHHHHCCCHHHHHHHH-HcCCccccccccccccccccc-cccccccccccccccccc------------ccccccc
Confidence            45566666666666666666 344555566666666666543 456666666666655433            233333 


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHHHHHHHh
Q 026423          142 NTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID  196 (238)
Q Consensus       142 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  196 (238)
                      .+|||+|++.|+.+++++|++.|+++ +..|..|+||||+|++.|+.+++++|+.
T Consensus        70 ~~~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          70 TRPVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccccccccc-ccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            34666666666666666666666655 5666666666666666666666666653

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.1e-26  Score=151.58  Aligned_cols=123  Identities=19%  Similarity=0.198  Sum_probs=111.5

Q ss_pred             cHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccccCCCCCC
Q 026423           98 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQT  177 (238)
Q Consensus        98 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t  177 (238)
                      ++|+.|+..|+.+++++|+++|+++.            .++..|+||||+|+..++.+++++|++.|++. +..|..|+|
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n------------~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~t   69 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPS------------LPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWT   69 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCC------------CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcc------------cccccccccccccccccccccccccccccccc-ccccccCcc
Confidence            67999999999999999999998754            68889999999999999999999999999988 789999999


Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCcccccCCC-CCCcHHHHH--HHhcCcchhHHhhhcccc
Q 026423          178 PLSIAIDSSLTDIACFIIDQRPESLNHRLP-EELTLLHSA--VMRQNYGEPMIFISLNKC  234 (238)
Q Consensus       178 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~l~~A--~~~~~~~~~~~L~~~g~~  234 (238)
                      |||+|+..|+.+++++|+++| ++++..+. .|.||++++  ...|+.+++++|++.+.+
T Consensus        70 pLh~A~~~g~~~~v~~Ll~~g-a~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~~~  128 (130)
T d1ycsb1          70 PLHCAASCNNVQVCKFLVESG-AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK  128 (130)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTT-CCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHH
T ss_pred             cccccchhhHHHHHHHHHHcC-CCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHHHh
Confidence            999999999999999999999 99987764 588887766  577899999999987654

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=4.4e-27  Score=152.18  Aligned_cols=107  Identities=20%  Similarity=0.260  Sum_probs=99.9

Q ss_pred             CHHHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCC
Q 026423           29 DHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGD  108 (238)
Q Consensus        29 ~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~  108 (238)
                      ++||++|++.|+.++|++|+++|+++ +..+..|.||||+|+..|+.+++++|+ ..+.+++.++..|+||||+|+..|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll-~~g~din~~d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLL-LKGADINAPDKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHH-HSSCTTTCCSSSCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc-ccccccccccccccccccccccccccc-cccceeeecccccccchhhhhhcCc
Confidence            56999999999999999999999999 889999999999999999999999999 5778889999999999999999999


Q ss_pred             HHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHH
Q 026423          109 PAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAV  149 (238)
Q Consensus       109 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~  149 (238)
                      .+++++|+++|+++.            .++..|.||||+|.
T Consensus        81 ~~~v~~Ll~~Gad~~------------~~d~~G~t~l~~a~  109 (118)
T d1myoa_          81 VSCVKLLLSKGADKT------------VKGPDGLTALEATD  109 (118)
T ss_dssp             CHHHHHHHTTCCCSS------------SSSSSTCCCCCTCS
T ss_pred             hhhhhhhhcccccce------------eeCCCCCCHHHHHh
Confidence            999999999998754            68889999999883

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.6e-25  Score=146.28  Aligned_cols=89  Identities=20%  Similarity=0.230  Sum_probs=45.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhhhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCCHH
Q 026423           31 ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPA  110 (238)
Q Consensus        31 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~  110 (238)
                      +|+.|+..|+.++|++|+++|.++ +..+..|.||||+|+..++.+++++|+ +.+.+++.+|..|+||||+|+..|+.+
T Consensus         4 lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll-~~g~~~~~~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           4 LLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLV-QFGVNVNAADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHH-HHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCc-ccccccccccccccccccccccccccc-ccccccccccccCcccccccchhhHHH
Confidence            455555555555555555555554 444555555555555555555555555 233444444555555555555555555


Q ss_pred             HHHHHHhhCcc
Q 026423          111 IVSTILKYAPA  121 (238)
Q Consensus       111 ~~~~ll~~~~~  121 (238)
                      ++++|+++|++
T Consensus        82 ~v~~Ll~~ga~   92 (130)
T d1ycsb1          82 VCKFLVESGAA   92 (130)
T ss_dssp             HHHHHHHTTCC
T ss_pred             HHHHHHHcCCC
Confidence            55555554444

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.8e-24  Score=145.80  Aligned_cols=128  Identities=16%  Similarity=0.054  Sum_probs=110.5

Q ss_pred             HHHHHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHH---cCCHHHHHHHHHcCCccccccCCCC
Q 026423           99 PLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR---NKHENVVRMLVKKDRIPLGYLNNAE  175 (238)
Q Consensus        99 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~---~~~~~~~~~ll~~~~~~~~~~~~~g  175 (238)
                      .|..|++.++...+..++..|.++...      ......+..|+||||+|++   .+..+++++|+++|+++ +.++..|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~------~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g   81 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEK------IPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKG   81 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSB------CCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTC
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCC------CCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhh
Confidence            355678889988888888887664421      1122346779999999997   46789999999999988 8899999


Q ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccc
Q 026423          176 QTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKC  234 (238)
Q Consensus       176 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~  234 (238)
                      +||||+|++.|+.+++++|+++| ++++.+|..|+||||+|+++++.+++++|++.++.
T Consensus        82 ~TpLh~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          82 STALHYCCLTDNAECLKLLLRGK-ASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             ccccccccccccccccccccccC-ccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            99999999999999999999998 99999999999999999999999999999998764

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.5e-25  Score=168.24  Aligned_cols=173  Identities=18%  Similarity=0.124  Sum_probs=115.7

Q ss_pred             hhhccccccCCCCchHHHHHHHcCCcchHHHHHHcCccccccCCCCCCcHHHHHHHhCC-------HHHHHHHHhhCccc
Q 026423           50 RMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGD-------PAIVSTILKYAPAI  122 (238)
Q Consensus        50 ~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~-------~~~~~~ll~~~~~~  122 (238)
                      .+.++....|..|.||||+||..|+.+++++|+ +.+++++.+|..|+||||.|+..++       .++++++...    
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll-~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~----  169 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLV-KHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC----  169 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG----
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhh----
Confidence            345662234889999999999999999999999 5678899999999999999998664       2344443321    


Q ss_pred             cCCCCCCCcccccccCCCCCcHHHHHHHcCC----HH--------HHHHHHHcCCccccccCCCCCCHHHHHHHcCcHHH
Q 026423          123 TNGTESEPESLLRITDDEGNTPLHNAVRNKH----EN--------VVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDI  190 (238)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~----~~--------~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  190 (238)
                                 +...+..|+||||+++..+.    ..        ++.++...+..........+.++++.+........
T Consensus       170 -----------~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (301)
T d1sw6a_         170 -----------LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSI  238 (301)
T ss_dssp             -----------GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHH
T ss_pred             -----------hhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHH
Confidence                       22567889999999876443    22        34556666665545555666666666554443333


Q ss_pred             HHHHHh--cCCcccccCCCCCCcHHHHHHHhcCcchhHHhhhcccccCCC
Q 026423          191 ACFIID--QRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV  238 (238)
Q Consensus       191 ~~~Ll~--~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~g~~~~~~  238 (238)
                      +..+..  .....+|.+|.+|+||||+|++.|+.+++++|+++|+++++.
T Consensus       239 ~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~  288 (301)
T d1sw6a_         239 LENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA  288 (301)
T ss_dssp             HHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence            322211  001337899999999999999999999999999999999874

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=7.1e-24  Score=142.84  Aligned_cols=121  Identities=22%  Similarity=0.323  Sum_probs=70.6

Q ss_pred             HHHHHHHcCCHHHHHHHHhhhhcccccc------CCCCchHHHHHHHc---CCcchHHHHHHcCccccccCCCCCCcHHH
Q 026423           31 ELLNVLRRGDEHQISLIAGRMQNIFSTM------SPRGNTVLHMAIRF---RNHKVIPEILRRRDSLLRKNNWKGETPLH  101 (238)
Q Consensus        31 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~------~~~g~t~L~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~  101 (238)
                      .|+.|++.+++..+..++..|.++ ...      +..|.||||+|+..   ++.+++++|+ ..+.+++.++..|+||||
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~-~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll-~~gadin~~d~~g~TpLh   86 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDL-TEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV-QNSGNLDKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT-TSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHH-HHCSCTTCCCTTCCCHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCc-CCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHH-HcCCChhhhhhhhccccc
Confidence            477888889988888888888776 222      34455666666543   3445555555 234445555555555555


Q ss_pred             HHHHhCCHHHHHHHHhhCccccCCCCCCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 026423          102 IAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDR  165 (238)
Q Consensus       102 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~  165 (238)
                      +|+..|+.+++++|+++|+++.            .++..|.||||+|++.|+.+++++|++.++
T Consensus        87 ~A~~~~~~~~v~~Ll~~gad~~------------~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLRGKASIE------------IANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTT------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cccccccccccccccccCcccc------------ccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            5555555555555555554432            345555555555555555555555555443

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.91  E-value=5.5e-27  Score=179.26  Aligned_cols=133  Identities=13%  Similarity=0.134  Sum_probs=108.6

Q ss_pred             cccCCCCchHHHHHHHcCCcchHHHH--HHcCccccccCCCCCCcHHHHHHHhCCHHHHHHHHhhCccccCCCCCCCccc
Q 026423           56 STMSPRGNTVLHMAIRFRNHKVIPEI--LRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESL  133 (238)
Q Consensus        56 ~~~~~~g~t~L~~a~~~~~~~~~~~L--l~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~  133 (238)
                      +..+..|.||||+|+..|+.++++++  |...+.+++.++..|+||||+|+..|+.+++++|+++|+++...        
T Consensus        84 ~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~--------  155 (346)
T d2ajaa1          84 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMA--------  155 (346)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHH--------
T ss_pred             HhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccc--------
Confidence            44567899999999999999888764  33788899999999999999999999999999999999775421        


Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCccc--cccCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 026423          134 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPL--GYLNNAEQTPLSIAIDSSLTDIACFIIDQR  198 (238)
Q Consensus       134 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~--~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  198 (238)
                        ..+..|.||||+|+..|+.+++++|++.|+...  +..+..+.||++.|+..|+.+++++|++.|
T Consensus       156 --~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~g  220 (346)
T d2ajaa1         156 --MIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP  220 (346)
T ss_dssp             --HHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH
T ss_pred             --ccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCC
Confidence              123468999999999999999999999987652  233455778888899999999999999876