Citrus Sinensis ID: 026440

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MDMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKAMLEG
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHccccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mdmdidqtikdkdlfkaaetgdsstfksLSKQQLLKSLslrndddrTLLHVAASCGHPEVVEILLSVDesanvvnavdeegwapihsaasiGNVTIVEMLLSkgadvnlkndggrtALHYAASKGWLKIVELLISRgakinskdkvgctalhrgastgNSALCELLIEEgaevdatdkagqtplmnAVICYNKEVALLLIRhgadvdvedkegytvlgrasndfrPILIDAAKAMLEG
Flexible Loop (DISEMBL)
mdmdidqtikdkdlfkaaetgdsstfkslskQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYtvlgrasndfrpILIDAAKAMLEG
Low Complexity Region (SEG)
MDMDIDQTIKDKDLFKAAETGDSSTFkslskqqllkslslRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKAMLEG
Disordered region (IsUnstruct)
*********************************************RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDA*******
Disordered Region (DISOPRED)
MDMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKAMLEG
Disordered Region (DISEMBL)
MDMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKAMLEG
Disordered Region (DISPRO)
MDMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKAMLEG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKAMLEG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	238	2.2.26 [Sep-21-2011]
Q54HW1	232	26S proteasome non-ATPase	yes	no	0.924	0.948	0.375	2e-30
O75832	226	26S proteasome non-ATPase	yes	no	0.823	0.867	0.431	5e-30
Q9Z2X3	231	26S proteasome non-ATPase	yes	no	0.798	0.822	0.432	3e-29
Q9Z2X2	231	26S proteasome non-ATPase	yes	no	0.819	0.844	0.422	6e-29
Q4UMH6	1179	Putative ankyrin repeat p	yes	no	0.823	0.166	0.363	4e-28
Q502K3	1071	Serine/threonine-protein	no	no	0.878	0.195	0.365	3e-26
Q0VGY8	1856	Protein TANC1 OS=Mus musc	no	no	0.718	0.092	0.402	8e-25
Q6F6B3	1849	Protein TANC1 OS=Rattus n	no	no	0.718	0.092	0.402	1e-24
P50086	228	Probable 26S proteasome r	yes	no	0.844	0.881	0.341	2e-24
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.735	0.089	0.346	2e-24

>sp|Q54HW1|PSD10_DICDI 26S proteasome non-ATPase regulatory subunit 10 OS=Dictyostelium discoideum GN=psmD10 PE=2 SV=1

 Score =  132 bits (333), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 127/224 (56%), Gaps = 4/224 (1%)

Query: 10  KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDE 69
           K+ DL +  + G     K L + Q +K+   +++D+RT LH AA+ G   V + L+  D 
Sbjct: 12  KEDDLLEFVKVGKLLEVKDLIENQGVKA-DCKDEDERTPLHWAAAKGQISVAQYLM--DN 68

Query: 70  SANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKI 129
                N  D+ GW P+ SA S G+  +V++LL  GAD N  ND  RT LHYA+SKG   I
Sbjct: 69  CKCSPNTNDDGGWTPLTSATSAGHTHMVKLLLEFGADPNTVNDSKRTPLHYASSKGRSDI 128

Query: 130 VELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVI 189
           V+LL++ GAK N KD  G   +HR +S G+ A  E L++  A +++T+  G TPL  A  
Sbjct: 129 VDLLLTHGAK-NRKDDTGSAPIHRASSNGSVATVERLLKGEANINSTNNEGDTPLHIAAE 187

Query: 190 CYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAK 233
             +++V   L++HGAD  +E+K+  T +  +S+     LI   K
Sbjct: 188 YNHEDVVECLLKHGADTTIENKDSKTPIDMSSSQTIKYLIKEFK 231

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the 19S regulatory complex (RC).
Dictyostelium discoideum (taxid: 44689)

>sp|O75832|PSD10_HUMAN 26S proteasome non-ATPase regulatory subunit 10 OS=Homo sapiens GN=PSMD10 PE=1 SV=1

 Score =  131 bits (329), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 88/204 (43%), Positives = 111/204 (54%), Gaps = 8/204 (3%)

Query: 36  KSLSLRNDDD-RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNV 94
           KSL+ R D D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G  
Sbjct: 30  KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRD 86

Query: 95  TIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRG 154
            IV+ LL KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD    TA+HR 
Sbjct: 87  EIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRA 146

Query: 155 ASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGY 214
           A+ GN  +  +L+   A  +  D  G TPL  A      E A LL+  GA + +E+KE  
Sbjct: 147 AAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEK 206

Query: 215 TVLGRASNDFRPILIDAAKAMLEG 238
           T L  A      IL    K M+EG
Sbjct: 207 TPLQVAKGGLGLIL----KRMVEG 226

Acts as an proto-oncoprotein by being involved in negative regulation of tumor suppressors RB1 and p53/TP53. Overexpression is leading to phosphorylation of RB1 and proteasomal degradation of RB1. Regulates CDK4-mediated phosphorylation of RB1 by competing with CDKN2A for binding with CDK4. Facilitates binding of MDM2 to p53/TP53 and the mono- and polyubiquitination of p53/TP53 by MDM2 suggesting a function in targeting the TP53:MDM2 complex to the 26S proteasome. Involved in p53-independent apoptosis. Involved in regulation of NF-kappa-B by retaining it in the cytoplasm. Binds to the NF-kappa-B component RELA and accelerates its XPO1/CRM1-mediated nuclear export.

Homo sapiens (taxid: 9606)

>sp|Q9Z2X3|PSD10_RAT 26S proteasome non-ATPase regulatory subunit 10 OS=Rattus norvegicus GN=Psmd10 PE=2 SV=1

 Score =  128 bits (322), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/194 (43%), Positives = 107/194 (55%), Gaps = 4/194 (2%)

Query: 36  KSLSLRNDDD-RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNV 94
           KSL+ R D D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G  
Sbjct: 30  KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNEKDDAGWSPLHIAASAGRD 86

Query: 95  TIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRG 154
            IV+ LL KGA VN  N  G TALHYAASK   +I  +L+  GA  ++K+    TA+HR 
Sbjct: 87  EIVKALLIKGAQVNAVNQNGCTALHYAASKNRHEIAVMLLEGGANPDAKNHYDATAMHRA 146

Query: 155 ASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGY 214
           A+ GN  +  +L+   A  +  D  G TPL  A      E A LL+  GA + +E+KE  
Sbjct: 147 AAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKLLVTQGASIYIENKEEK 206

Query: 215 TVLGRASNDFRPIL 228
           T L  A      IL
Sbjct: 207 TPLQVAKGGLGLIL 220

Acts as an oncoprotein by being involved in negative regulation of tumor suppressors RB1 and p53/TP53. Overexpression is leading to phosphorylation of RB1 and proteasomal degradation of RB1. Regulates CDK4-mediated phosphorylation of RB1 by competing with CDKN2A for binding with CDK4. Facilitates binding of MDM2 to p53/TP53 and the mono- and polyubiquitination of p53/TP53 by MDM2 suggesting a function in targeting the TP53:MDM2 complex to the 26S proteasome. Involved in p53-independent apoptosis. Involved in regulation of NF-kappa-B by retaining it in the cytoplasm. Binds to the NF-kappa-B component RELA and accelerates its XPO1/CRM1-mediated nuclear export.

Rattus norvegicus (taxid: 10116)

>sp|Q9Z2X2|PSD10_MOUSE 26S proteasome non-ATPase regulatory subunit 10 OS=Mus musculus GN=Psmd10 PE=1 SV=3

 Score =  127 bits (319), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 85/201 (42%), Positives = 110/201 (54%), Gaps = 6/201 (2%)

Query: 31  KQQLL--KSLSLRNDDD-RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS 87
           K+++L  KSL+ R D D RT LH A S GH E+VE LL +      VN  D+ GW+P+H 
Sbjct: 23  KERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHI 79

Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
           AAS G   IV+ LL KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD   
Sbjct: 80  AASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD 139

Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
            TA+HR A+ GN  +  +L+   A  +  D  G TPL  A      E A  L+  GA + 
Sbjct: 140 ATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY 199

Query: 208 VEDKEGYTVLGRASNDFRPIL 228
           +E+KE  T L  A      IL
Sbjct: 200 IENKEEKTPLQVAKGGLGLIL 220

Acts as an oncoprotein by being involved in negative regulation of tumor suppressors RB1 and p53/TP53. Overexpression is leading to phosphorylation of RB1 and proteasomal degradation of RB1. Regulates CDK4-mediated phosphorylation of RB1 by competing with CDKN2A for binding with CDK4. Facilitates binding of MDM2 to p53/TP53 and the mono- and polyubiquitination of p53/TP53 by MDM2 suggesting a function in targeting the TP53:MDM2 complex to the 26S proteasome. Involved in p53-independent apoptosis. Involved in regulation of NF-kappa-B by retaining it in the cytoplasm. Binds to the NF-kappa-B component RELA and accelerates its XPO1/CRM1-mediated nuclear export.

Mus musculus (taxid: 10090)

>sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1

 Score =  125 bits (313), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 73/201 (36%), Positives = 116/201 (57%), Gaps = 5/201 (2%)

Query: 17   AAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNA 76
            AA++G+ +    L K +    +  + +   T+LH AA  G+  +V +L+    +   +N 
Sbjct: 938  AAKSGNLNLVNWLIKNK--ADIHAKTNSGETILHFAAESGNLNLVSLLI---HNGTDINT 992

Query: 77   VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR 136
              ++G   +H A   GN+ +V +L+ KG DVN K + G T LH+A   G L +V LL+ R
Sbjct: 993  KTDDGLTALHYAVESGNLNLVSLLIHKGIDVNAKTNSGETILHFAVDLGSLDLVSLLMVR 1052

Query: 137  GAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVA 196
            GA +N+K   G TALH    + N AL  LL+  GA+V+A + +G+TPL  AVI  + ++ 
Sbjct: 1053 GADVNAKTDDGLTALHYAVESDNLALVSLLMVYGADVNAKNNSGETPLHYAVIFNSLDLV 1112

Query: 197  LLLIRHGADVDVEDKEGYTVL 217
             LLI +GAD++ ++  G TVL
Sbjct: 1113 SLLIHNGADINTKNNSGETVL 1133

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

>sp|Q502K3|ANR52_DANRE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Danio rerio GN=ankrd52 PE=2 SV=1

 Score =  118 bits (296), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/219 (36%), Positives = 121/219 (55%), Gaps = 10/219 (4%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLS--VDESA 71
           L  AA++G     K L  +    +LS  +  DR  +H AA  GH EVV++L+S   D+S 
Sbjct: 144 LHHAAQSGYQEMVKLLLNKG--ANLSASDKKDRQPIHWAAYLGHLEVVKLLVSQGSDKSC 201

Query: 72  NVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
                 D+ G+ P+H+AA+ G+V +V+ LL  GA+++  N  G TALH A   G   +  
Sbjct: 202 K-----DKRGYTPLHAAAASGHVDVVKYLLRNGAEIDEPNAFGNTALHVACYTGQEAVAN 256

Query: 132 LLISRGAKINSKDKVGCTALHRGASTGNSALC-ELLIEEGAEVDATDKAGQTPLMNAVIC 190
            L++RGA +N  +  G T LH  A + N ALC ELL+  GA+V+   K G++PL  A I 
Sbjct: 257 ELVNRGANVNQPNHRGYTPLHLAAVSTNGALCLELLVNNGADVNMQSKEGKSPLHMAAIH 316

Query: 191 YNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILI 229
                + +LI++G ++D  D+ G T L  A+     +LI
Sbjct: 317 GRFTRSQILIQNGGEIDCVDRYGNTPLHVAAKYGHELLI 355

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Danio rerio (taxid: 7955)

>sp|Q0VGY8|TANC1_MOUSE Protein TANC1 OS=Mus musculus GN=Tanc1 PE=1 SV=2

 Score =  114 bits (284), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 70/174 (40%), Positives = 97/174 (55%), Gaps = 3/174 (1%)

Query: 47   TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
            T L  AA  G  E+ E+LL   E    V+  +  G  P+  AA  G+  +V +LL +G D
Sbjct: 1078 TALTAAAGRGKVEICELLL---ERGAAVSRANRRGVPPLFCAARQGHWQVVRLLLDRGCD 1134

Query: 107  VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
            VNL +  GRT L  A+ +G L  VE L+S+GA ++S DK G +AL      G+ A+ + L
Sbjct: 1135 VNLSDKQGRTPLMVASCEGHLSTVEFLLSKGAALSSLDKEGLSALSWACLKGHRAVVQYL 1194

Query: 167  IEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRA 220
            +EEGAE+D TDK G+TPL  A    + E  L L+  GA ++  D  G   L RA
Sbjct: 1195 VEEGAEIDQTDKNGRTPLDLAAFYGDAETVLYLVEKGAVIEHVDHSGMRPLDRA 1248

May be a scaffold component in the postsynaptic density.

Mus musculus (taxid: 10090)

>sp|Q6F6B3|TANC1_RAT Protein TANC1 OS=Rattus norvegicus GN=Tanc1 PE=1 SV=1

 Score =  113 bits (283), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/174 (40%), Positives = 97/174 (55%), Gaps = 3/174 (1%)

Query: 47   TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
            T L  AA  G  E+ E+LL   E    V+  +  G  P+  AA  G+  +V++LL +G D
Sbjct: 1071 TALTAAAGRGKLEICELLL---ERGAAVSRANRRGVPPLFCAARQGHWQVVQLLLDRGCD 1127

Query: 107  VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
            VN  +  GRT L  AA +G L  VE L+S+GA ++S DK G +AL      G+ A+ + L
Sbjct: 1128 VNPNDKQGRTPLMVAACEGHLSTVEFLLSKGAALSSLDKEGLSALSWACLKGHRAVVQYL 1187

Query: 167  IEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRA 220
            +EEGAE+D TDK G+TPL  A    + E  L L+  GA ++  D  G   L RA
Sbjct: 1188 VEEGAEIDQTDKNGRTPLDLAAFYGDAETVLYLVEKGAVIEHVDHSGMRPLDRA 1241

May be a scaffold component in the postsynaptic density.

Rattus norvegicus (taxid: 10116)

>sp|P50086|PSD10_YEAST Probable 26S proteasome regulatory subunit p28 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NAS6 PE=1 SV=1

 Score =  112 bits (280), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/217 (34%), Positives = 110/217 (50%), Gaps = 16/217 (7%)

Query: 2   DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDD-RTLLHVAASCGHPEV 60
           +  + Q   + + FK  E   S             SL L+ D D R  LH + S    E+
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKP-----------SLLLQKDQDGRIPLHWSVSFQAHEI 51

Query: 61  VEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG--ADVNLKNDGGRTAL 118
              LLS  E+ N+ +  D+ GW P H A S+GN+ +V+ L  +    D+N   + G T L
Sbjct: 52  TSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCL 111

Query: 119 HYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEG-AEVDATD 177
           H A  K W ++ + LI  GA +  KDK     LHR AS G+  L ELL   G + V+  D
Sbjct: 112 HLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD 171

Query: 178 KAGQTPLMNAVICYNKEVALLLI-RHGADVDVEDKEG 213
           K G TPL +A+   + + A+LL+ ++GA+ D+ D +G
Sbjct: 172 KQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the 19S regulatory complex (RC) and appears to have an overlapping role with RPN14.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score =  112 bits (280), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/205 (34%), Positives = 101/205 (49%), Gaps = 30/205 (14%)

Query: 43  DDDRTLLHVAASCGHPEVVEILLSVDESANV----------------------------- 73
           +D  T LHVAA CGH +V ++LL    S N                              
Sbjct: 348 NDYLTALHVAAHCGHYKVAKVLLDKKASPNAKALNGFTPLHIACKKNRIRVMELLLKHGA 407

Query: 74  -VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVEL 132
            + AV E G  PIH AA +G+V IV  L+  GA  N  N  G TALH AA  G  ++V  
Sbjct: 408 SIQAVTESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRY 467

Query: 133 LISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYN 192
           L+  GA++ +K K   T LH  A  G + + + L+++GA  +A   +G TPL  A    +
Sbjct: 468 LVQDGAQVEAKAKDDQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLAAREGH 527

Query: 193 KEVALLLIRHGADVDVEDKEGYTVL 217
           ++VA  L+ HGA + +  K+G+T L
Sbjct: 528 EDVAAFLLDHGASLSITTKKGFTPL 552

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
224108912	244	predicted protein [Populus trichocarpa]	1.0	0.975	0.822	1e-106
359472517	243	PREDICTED: serine/threonine-protein phos	1.0	0.979	0.769	1e-104
351726608	243	uncharacterized protein LOC100499930 [Gl	0.995	0.975	0.761	1e-101
255542108	243	ankyrin repeat-containing protein, putat	0.991	0.971	0.781	1e-101
449452082	243	PREDICTED: 26S proteasome non-ATPase reg	1.0	0.979	0.757	1e-100
388490486	245	unknown [Lotus japonicus]	0.995	0.967	0.738	1e-97
357487433	247	Ankyrin repeat domain-containing protein	0.995	0.959	0.748	2e-91
388520411	247	unknown [Medicago truncatula]	0.995	0.959	0.748	4e-91
30678058	240	26S proteasome non-ATPase regulatory sub	0.987	0.979	0.693	6e-91
4335756	247	putative ankyrin [Arabidopsis thaliana]	0.987	0.951	0.673	6e-89

>gi|224108912|ref|XP_002315012.1| predicted protein [Populus trichocarpa] gi|222864052|gb|EEF01183.1| predicted protein [Populus trichocarpa]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/242 (82%), Positives = 215/242 (88%), Gaps = 4/242 (1%)

Query: 1   MDMDIDQT--IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHP 58
           MDMDID    IKDKDLFKAAETGDSSTFKSL  ++L K+LSL+NDD R++LHVAAS GHP
Sbjct: 3   MDMDIDPPSQIKDKDLFKAAETGDSSTFKSLPPERLSKALSLQNDDGRSVLHVAASSGHP 62

Query: 59  EVVEILLSVDESAN-VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG-ADVNLKNDGGRT 116
           EVV+IL  +D+S++ VVN  DEEGWAP+HSAASIGNV IVE+LLSKG ADVNLKNDGGR 
Sbjct: 63  EVVKILSDIDQSSSAVVNGKDEEGWAPLHSAASIGNVEIVEILLSKGRADVNLKNDGGRA 122

Query: 117 ALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDAT 176
           ALHYAASKGWLKI +LLIS GAKIN KDKVGCT LHR ASTGNS LCELLIEEGAEVDA 
Sbjct: 123 ALHYAASKGWLKIAQLLISHGAKINIKDKVGCTPLHRAASTGNSELCELLIEEGAEVDAV 182

Query: 177 DKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKAML 236
           DKA QTPLM+A+IC NKEVALLLIRHGADVDVEDKEGYTVLGRAS DFRPILIDAAKAML
Sbjct: 183 DKADQTPLMSAIICNNKEVALLLIRHGADVDVEDKEGYTVLGRASEDFRPILIDAAKAML 242

Query: 237 EG 238
           EG
Sbjct: 243 EG 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472517|ref|XP_002271979.2| PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like [Vitis vinifera]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/243 (76%), Positives = 213/243 (87%), Gaps = 5/243 (2%)

Query: 1   MDMDIDQT-----IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASC 55
           MDM+ID T     IKD+DLF+AA++GDSS F++LS QQLL++LSLRN+DDR+LLHVA S 
Sbjct: 1   MDMEIDPTEPEAQIKDEDLFRAADSGDSSVFRALSPQQLLRALSLRNEDDRSLLHVATSL 60

Query: 56  GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR 115
           GH EVV++L   D S + +N+VDEEGWAP+HSAAS G+  IVE+L+S+GADVNLKNDGGR
Sbjct: 61  GHLEVVKMLSEADPSVSGINSVDEEGWAPLHSAASSGHTEIVEILISRGADVNLKNDGGR 120

Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 175
           TALHYAASKGWLKI E LI   AKIN+KDK+GCT LHR ASTGNSA+CELLIEEGAEVDA
Sbjct: 121 TALHYAASKGWLKIAEFLILHNAKINAKDKIGCTPLHRAASTGNSAMCELLIEEGAEVDA 180

Query: 176 TDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKAM 235
            DKAGQTPLMNAVIC NKEVALLLIRHGADVDVEDKEGYTVLGR S+DFRPIL+DAAKAM
Sbjct: 181 IDKAGQTPLMNAVICQNKEVALLLIRHGADVDVEDKEGYTVLGRTSDDFRPILVDAAKAM 240

Query: 236 LEG 238
           LEG
Sbjct: 241 LEG 243

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726608|ref|NP_001238156.1| uncharacterized protein LOC100499930 [Glycine max] gi|255627777|gb|ACU14233.1| unknown [Glycine max]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/243 (76%), Positives = 208/243 (85%), Gaps = 6/243 (2%)

Query: 1   MDMDIDQ------TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAAS 54
           M+M++D        +K+KDLFKAAE GD STF++ S + L K+LSLRN+D R+LLHVAAS
Sbjct: 1   MEMEVDTEKKQQDVVKEKDLFKAAEEGDMSTFEAHSSETLSKALSLRNEDARSLLHVAAS 60

Query: 55  CGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGG 114
            GH +VV++LLS D S  VVN  DEEGWAP+HSAASIG+V IVE LLSKGADVNLKN+GG
Sbjct: 61  SGHSQVVKMLLSCDASVGVVNCADEEGWAPLHSAASIGSVEIVETLLSKGADVNLKNNGG 120

Query: 115 RTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVD 174
           RTALHYAASKGW+KI E+LIS  AKIN KDKVGCT LHR ASTG S LCE LIEEGAEVD
Sbjct: 121 RTALHYAASKGWVKIAEMLISHDAKINIKDKVGCTPLHRAASTGKSELCEFLIEEGAEVD 180

Query: 175 ATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKA 234
           A D+AGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRA+++FRPILIDAAKA
Sbjct: 181 AVDRAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRATHEFRPILIDAAKA 240

Query: 235 MLE 237
           MLE
Sbjct: 241 MLE 243

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542108|ref|XP_002512118.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223549298|gb|EEF50787.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/243 (78%), Positives = 208/243 (85%), Gaps = 7/243 (2%)

Query: 3   MDIDQT------IKDKDLFKAAETGDSSTFKSLSKQQLLKSL-SLRNDDDRTLLHVAASC 55
           M+ID T      I DKDLFKAAE+GDSSTFKSLS +QL  +L SL+NDD R+LLHVAASC
Sbjct: 1   MEIDSTDQTGRQITDKDLFKAAESGDSSTFKSLSPEQLSTALLSLQNDDARSLLHVAASC 60

Query: 56  GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR 115
           GH EVV+ILL VDE  +VVN+ DEEGW P+HSAASIGN+ IVE+LLSKGADVN K DGGR
Sbjct: 61  GHLEVVKILLDVDEPKSVVNSKDEEGWTPLHSAASIGNLEIVEILLSKGADVNAKTDGGR 120

Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 175
            ALHYAASKGWLKI E+LI  GAKIN KDKVGCT+LHR ASTGN  LCELLIEEGAEVD+
Sbjct: 121 AALHYAASKGWLKIAEVLILHGAKINLKDKVGCTSLHRAASTGNYQLCELLIEEGAEVDS 180

Query: 176 TDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKAM 235
            DKAGQTPLM AVIC NKEVALLLIRHGADVD EDKEGYTVLGRAS++FRP L+DAAKAM
Sbjct: 181 IDKAGQTPLMTAVICDNKEVALLLIRHGADVDAEDKEGYTVLGRASDEFRPSLVDAAKAM 240

Query: 236 LEG 238
           LEG
Sbjct: 241 LEG 243

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452082|ref|XP_004143789.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 10-like [Cucumis sativus] gi|449513555|ref|XP_004164356.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 10-like [Cucumis sativus]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/243 (75%), Positives = 205/243 (84%), Gaps = 5/243 (2%)

Query: 1   MDMDIDQT-----IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASC 55
           MDM+ID +     IKD DLFKAAETGDSS F +L+  QL +SLSLRN+DDR+LLHVA S 
Sbjct: 1   MDMEIDASKDVCLIKDNDLFKAAETGDSSVFTALTPHQLSQSLSLRNEDDRSLLHVAVSS 60

Query: 56  GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR 115
           GH +VV+IL++ D+S  V+N  DEEGWAPIHSAASIG   I+++LLS GADVNLKNDGGR
Sbjct: 61  GHADVVKILVTADQSTKVINCADEEGWAPIHSAASIGRSDILDILLSGGADVNLKNDGGR 120

Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 175
           TALHYA+SKGWLKI E LIS GAKIN KDKVGCT LHR ASTGNS LCE LIEEGAEVDA
Sbjct: 121 TALHYASSKGWLKIAETLISHGAKINLKDKVGCTPLHRAASTGNSELCEFLIEEGAEVDA 180

Query: 176 TDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKAM 235
           TDKAGQTPLMNAV+C NKEVALLLIRHGADVDVED EG+TVLGRAS + RP LIDAAK M
Sbjct: 181 TDKAGQTPLMNAVVCENKEVALLLIRHGADVDVEDGEGFTVLGRASIELRPALIDAAKTM 240

Query: 236 LEG 238
           +EG
Sbjct: 241 VEG 243

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490486|gb|AFK33309.1| unknown [Lotus japonicus]

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 181/245 (73%), Positives = 209/245 (85%), Gaps = 8/245 (3%)

Query: 1   MDMDIDQ--------TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVA 52
           M+M++D          +K+KDLFKAAE GD+STF++ S + L +SLSLRN+D R+LLHVA
Sbjct: 1   MEMEVDSEKNQQDTVMVKEKDLFKAAEEGDTSTFQASSPETLSESLSLRNEDARSLLHVA 60

Query: 53  ASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND 112
           AS GH +VV+ILLS D SA+VVN+ D+EGWAP+HSAASIGN+ IVE LLSKGADVNLKN 
Sbjct: 61  ASSGHSQVVKILLSADASASVVNSADDEGWAPLHSAASIGNLEIVEALLSKGADVNLKNG 120

Query: 113 GGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE 172
           GGRTALHYAASKG +KI E+LIS  AK+N KDKVGCT LHR ASTGNS LCELLIEEGAE
Sbjct: 121 GGRTALHYAASKGRVKIAEILISHDAKVNIKDKVGCTPLHRAASTGNSELCELLIEEGAE 180

Query: 173 VDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAA 232
           VDA D+AGQTPLM+AVI  NKE+ALLLIRHGADVDVEDKEGYTVLGRA+++FR ILIDAA
Sbjct: 181 VDAVDRAGQTPLMSAVIDRNKEIALLLIRHGADVDVEDKEGYTVLGRATDEFRAILIDAA 240

Query: 233 KAMLE 237
           KAMLE
Sbjct: 241 KAMLE 245

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357487433|ref|XP_003614004.1| Ankyrin repeat domain-containing protein [Medicago truncatula] gi|355515339|gb|AES96962.1| Ankyrin repeat domain-containing protein [Medicago truncatula]

 Score =  340 bits (873), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 182/243 (74%), Positives = 208/243 (85%), Gaps = 6/243 (2%)

Query: 1   MDMDID-----QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASC 55
           M+M +D     +TIK+KDLFKAAE GDSSTF+SLS + L K+LSLRN+DDR+LLHVAAS 
Sbjct: 5   MNMVVDTEKKQETIKEKDLFKAAEEGDSSTFESLSSESLSKALSLRNEDDRSLLHVAASF 64

Query: 56  GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR 115
           GH +VV+ILLS D SA V+N+ DEEGWAP+HSAASIGN  I+E LL+KGADVN+KN+GGR
Sbjct: 65  GHSKVVKILLSCDASAEVINSGDEEGWAPLHSAASIGNSEILEALLNKGADVNIKNNGGR 124

Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 175
            ALHYAASKG +KI E+LIS  A IN KDKVG T LHR ASTG+S LCELLIEEGA+VDA
Sbjct: 125 AALHYAASKGRMKIAEILISHNANINIKDKVGSTPLHRAASTGHSELCELLIEEGADVDA 184

Query: 176 TDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASND-FRPILIDAAKA 234
            D+AGQTPLM+AVICYNKEVALLLIRHGADVDVEDKEGYTVLGR ++D FR ILIDAAK 
Sbjct: 185 VDRAGQTPLMSAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRITDDEFRSILIDAAKT 244

Query: 235 MLE 237
           MLE
Sbjct: 245 MLE 247

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520411|gb|AFK48267.1| unknown [Medicago truncatula]

 Score =  340 bits (871), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 182/243 (74%), Positives = 208/243 (85%), Gaps = 6/243 (2%)

Query: 1   MDMDID-----QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASC 55
           M+M +D     +TIK+KDLFKAAE GDSSTF+SLS + L K+LSLRN+DDR+LLHVAAS 
Sbjct: 5   MNMVVDTEKKQETIKEKDLFKAAEEGDSSTFESLSSESLSKALSLRNEDDRSLLHVAASF 64

Query: 56  GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR 115
           GH +VV+ILLS D SA V+N+ DEEGWAP+HSAASIGN  I+E LL+KGADVN+KN+GGR
Sbjct: 65  GHSKVVKILLSCDASAEVINSGDEEGWAPLHSAASIGNSEILEALLNKGADVNIKNNGGR 124

Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 175
            ALHYAASKG +KI E+LIS  A IN KDKVG T LHR ASTG+S LCELLIEEGA+VDA
Sbjct: 125 AALHYAASKGRMKIAEILISHNANINIKDKVGSTPLHRTASTGHSELCELLIEEGADVDA 184

Query: 176 TDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASND-FRPILIDAAKA 234
            D+AGQTPLM+AVICYNKEVALLLIRHGADVDVEDKEGYTVLGR ++D FR ILIDAAK 
Sbjct: 185 VDRAGQTPLMSAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRITDDEFRSILIDAAKT 244

Query: 235 MLE 237
           MLE
Sbjct: 245 MLE 247

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30678058|ref|NP_178442.2| 26S proteasome non-ATPase regulatory subunit 10 [Arabidopsis thaliana] gi|26449603|dbj|BAC41927.1| putative ankyrin [Arabidopsis thaliana] gi|28950799|gb|AAO63323.1| At2g03430 [Arabidopsis thaliana] gi|330250605|gb|AEC05699.1| 26S proteasome non-ATPase regulatory subunit 10 [Arabidopsis thaliana]

 Score =  339 bits (869), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 163/235 (69%), Positives = 199/235 (84%)

Query: 4   DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEI 63
           D  + ++D++LFKAAE GDSS F SLS++QL KSL+ RN+D R+LLHVAAS GH ++V++
Sbjct: 6   DTAKQMRDEELFKAAEWGDSSLFMSLSEEQLSKSLNFRNEDGRSLLHVAASFGHSQIVKL 65

Query: 64  LLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS 123
           L S DE+  V+N+ D+EGWAP+HSAASIGN  +VE+LL++GADVN KN+GGRTALHYAAS
Sbjct: 66  LSSSDEAKTVINSKDDEGWAPLHSAASIGNAELVEVLLTRGADVNAKNNGGRTALHYAAS 125

Query: 124 KGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTP 183
           KG L+I +LL++ GAKIN  DKVGCT LHR AS G   +CE LIEEGAE+DATDK GQT 
Sbjct: 126 KGRLEIAQLLLTHGAKINITDKVGCTPLHRAASVGKLEVCEFLIEEGAEIDATDKMGQTA 185

Query: 184 LMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKAMLEG 238
           LM++VIC +K+VA LLIRHGADVDVEDKEGYTVLGRA+N+FRP LIDAAKAMLEG
Sbjct: 186 LMHSVICDDKQVAFLLIRHGADVDVEDKEGYTVLGRATNEFRPALIDAAKAMLEG 240

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4335756|gb|AAD17433.1| putative ankyrin [Arabidopsis thaliana]

 Score =  332 bits (852), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 163/242 (67%), Positives = 199/242 (82%), Gaps = 7/242 (2%)

Query: 4   DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEI 63
           D  + ++D++LFKAAE GDSS F SLS++QL KSL+ RN+D R+LLHVAAS GH ++V++
Sbjct: 6   DTAKQMRDEELFKAAEWGDSSLFMSLSEEQLSKSLNFRNEDGRSLLHVAASFGHSQIVKL 65

Query: 64  LLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS 123
           L S DE+  V+N+ D+EGWAP+HSAASIGN  +VE+LL++GADVN KN+GGRTALHYAAS
Sbjct: 66  LSSSDEAKTVINSKDDEGWAPLHSAASIGNAELVEVLLTRGADVNAKNNGGRTALHYAAS 125

Query: 124 KGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTP 183
           KG L+I +LL++ GAKIN  DKVGCT LHR AS G   +CE LIEEGAE+DATDK GQT 
Sbjct: 126 KGRLEIAQLLLTHGAKINITDKVGCTPLHRAASVGKLEVCEFLIEEGAEIDATDKMGQTA 185

Query: 184 LMNAVICYNK-------EVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKAML 236
           LM++VIC +K       +VA LLIRHGADVDVEDKEGYTVLGRA+N+FRP LIDAAKAML
Sbjct: 186 LMHSVICDDKQLKVSMDQVAFLLIRHGADVDVEDKEGYTVLGRATNEFRPALIDAAKAML 245

Query: 237 EG 238
           EG
Sbjct: 246 EG 247

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
TAIR|locus:2063804	240	AT2G03430 "AT2G03430" [Arabido	0.987	0.979	0.659	9.7e-80
ZFIN|ZDB-GENE-050112-1	226	psmd10 "proteasome (prosome, m	0.798	0.840	0.401	8.8e-31
DICTYBASE|DDB_G0289189	232	psmD10 "26S proteasome non-ATP	0.798	0.818	0.393	3.8e-30
UNIPROTKB|E2RA22	226	PSMD10 "Uncharacterized protei	0.802	0.845	0.427	6.2e-30
UNIPROTKB|O75832	226	PSMD10 "26S proteasome non-ATP	0.802	0.845	0.427	6.2e-30
RGD|620350	231	Psmd10 "proteasome (prosome, m	0.777	0.800	0.428	3.4e-29
UNIPROTKB|F1P1R3	189	PSMD10 "Uncharacterized protei	0.781	0.984	0.406	9.1e-29
MGI|MGI:1858898	231	Psmd10 "proteasome (prosome, m	0.777	0.800	0.423	1.5e-28
ASPGD|ASPL0000061746	237	AN1209 [Emericella nidulans (t	0.802	0.805	0.368	6.6e-26
ASPGD|ASPL0000062824	1030	AN1130 [Emericella nidulans (t	0.836	0.193	0.362	1.3e-24

TAIR|locus:2063804 AT2G03430 "AT2G03430" [Arabidopsis thaliana (taxid:3702)]

 Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
 Identities = 155/235 (65%), Positives = 188/235 (80%)

Query:     4 DIDQTIKDKDLFKAAETGDSSTFXXXXXXXXXXXXXXRNDDDRTLLHVAASCGHPEVVEI 63
             D  + ++D++LFKAAE GDSS F              RN+D R+LLHVAAS GH ++V++
Sbjct:     6 DTAKQMRDEELFKAAEWGDSSLFMSLSEEQLSKSLNFRNEDGRSLLHVAASFGHSQIVKL 65

Query:    64 LLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS 123
             L S DE+  V+N+ D+EGWAP+HSAASIGN  +VE+LL++GADVN KN+GGRTALHYAAS
Sbjct:    66 LSSSDEAKTVINSKDDEGWAPLHSAASIGNAELVEVLLTRGADVNAKNNGGRTALHYAAS 125

Query:   124 KGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTP 183
             KG L+I +LL++ GAKIN  DKVGCT LHR AS G   +CE LIEEGAE+DATDK GQT 
Sbjct:   126 KGRLEIAQLLLTHGAKINITDKVGCTPLHRAASVGKLEVCEFLIEEGAEIDATDKMGQTA 185

Query:   184 LMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKAMLEG 238
             LM++VIC +K+VA LLIRHGADVDVEDKEGYTVLGRA+N+FRP LIDAAKAMLEG
Sbjct:   186 LMHSVICDDKQVAFLLIRHGADVDVEDKEGYTVLGRATNEFRPALIDAAKAMLEG 240

GO:0008150 "biological_process" evidence=ND

GO:0005618 "cell wall" evidence=IDA

GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA

GO:0006259 "DNA metabolic process" evidence=RCA

GO:0007059 "chromosome segregation" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007126 "meiosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0007140 "male meiosis" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0016444 "somatic cell DNA recombination" evidence=RCA

GO:0032204 "regulation of telomere maintenance" evidence=RCA

GO:0032504 "multicellular organism reproduction" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043247 "telomere maintenance in response to DNA damage" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

ZFIN|ZDB-GENE-050112-1 psmd10 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 10" [Danio rerio (taxid:7955)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 79/197 (40%), Positives = 107/197 (54%)

Query:    42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             + D RT LH A S GH  + + LL +      V+  D+  W P+H AAS G   IV  L+
Sbjct:    37 DQDSRTALHWACSAGHVNIAQFLLDLGVE---VDLKDDACWTPLHIAASAGREEIVRSLI 93

Query:   102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
             SKGA +N  N  G T LHYAASK   +I ++L+  GA  N+ DK+  T LHR ++ GN  
Sbjct:    94 SKGAQLNSVNQNGCTPLHYAASKNLYEIAQILLENGADPNATDKLQSTPLHRASAKGNYR 153

Query:   162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
             L +LL++E A  +  D  G TPL  A      E A LL+ HGA + +E+KE  T L  A 
Sbjct:   154 LIQLLLKESASTNIQDSEGNTPLHLACDEERAEAAKLLVEHGASIYIENKEKMTPLQVAK 213

Query:   222 NDFRPILIDAAKAMLEG 238
                  +L    K ++EG
Sbjct:   214 GGLGSVL----KRIVEG 226

GO:0000502 "proteasome complex" evidence=IEA

GO:0055088 "lipid homeostasis" evidence=IMP

DICTYBASE|DDB_G0289189 psmD10 "26S proteasome non-ATPase regulatory subunit 10" [Dictyostelium discoideum (taxid:44689)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 76/193 (39%), Positives = 113/193 (58%)

Query:    41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
             +++D+RT LH AA+ G   V + L+  D      N  D+ GW P+ SA S G+  +V++L
Sbjct:    42 KDEDERTPLHWAAAKGQISVAQYLM--DNCKCSPNTNDDGGWTPLTSATSAGHTHMVKLL 99

Query:   101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
             L  GAD N  ND  RT LHYA+SKG   IV+LL++ GAK N KD  G   +HR +S G+ 
Sbjct:   100 LEFGADPNTVNDSKRTPLHYASSKGRSDIVDLLLTHGAK-NRKDDTGSAPIHRASSNGSV 158

Query:   161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRA 220
             A  E L++  A +++T+  G TPL  A    +++V   L++HGAD  +E+K+  T +  +
Sbjct:   159 ATVERLLKGEANINSTNNEGDTPLHIAAEYNHEDVVECLLKHGADTTIENKDSKTPIDMS 218

Query:   221 SNDFRPILIDAAK 233
             S+     LI   K
Sbjct:   219 SSQTIKYLIKEFK 231

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|E2RA22 PSMD10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 85/199 (42%), Positives = 107/199 (53%)

Query:    41 RNDDD-RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
             R D D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ 
Sbjct:    35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKA 91

Query:   100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN 159
             LL KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD    TA+HR A+ GN
Sbjct:    92 LLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGN 151

Query:   160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGR 219
               +  +L+   A  +  D  G TPL  A      E A LL+  GA + +E+KE  T L  
Sbjct:   152 LKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV 211

Query:   220 ASNDFRPILIDAAKAMLEG 238
             A      IL    K M+EG
Sbjct:   212 AKGGLGLIL----KRMVEG 226

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

GO:0070682 "proteasome regulatory particle assembly" evidence=IEA

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IEA

GO:0043409 "negative regulation of MAPK cascade" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|O75832 PSMD10 "26S proteasome non-ATPase regulatory subunit 10" [Homo sapiens (taxid:9606)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 85/199 (42%), Positives = 107/199 (53%)

Query:    41 RNDDD-RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
             R D D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ 
Sbjct:    35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKA 91

Query:   100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN 159
             LL KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD    TA+HR A+ GN
Sbjct:    92 LLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGN 151

Query:   160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGR 219
               +  +L+   A  +  D  G TPL  A      E A LL+  GA + +E+KE  T L  
Sbjct:   152 LKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV 211

Query:   220 ASNDFRPILIDAAKAMLEG 238
             A      IL    K M+EG
Sbjct:   212 AKGGLGLIL----KRMVEG 226

GO:0005515 "protein binding" evidence=IPI

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA;TAS

GO:0030307 "positive regulation of cell growth" evidence=IDA

GO:0070682 "proteasome regulatory particle assembly" evidence=IMP

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IDA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IMP

GO:0043409 "negative regulation of MAPK cascade" evidence=IMP

GO:0043066 "negative regulation of apoptotic process" evidence=IDA;IMP

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IDA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IMP

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IDA

GO:0000502 "proteasome complex" evidence=TAS

GO:0005838 "proteasome regulatory particle" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0045111 "intermediate filament cytoskeleton" evidence=IDA

RGD|620350 Psmd10 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 10" [Rattus norvegicus (taxid:10116)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 81/189 (42%), Positives = 103/189 (54%)

Query:    41 RNDDD-RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
             R D D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ 
Sbjct:    35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNEKDDAGWSPLHIAASAGRDEIVKA 91

Query:   100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN 159
             LL KGA VN  N  G TALHYAASK   +I  +L+  GA  ++K+    TA+HR A+ GN
Sbjct:    92 LLIKGAQVNAVNQNGCTALHYAASKNRHEIAVMLLEGGANPDAKNHYDATAMHRAAAKGN 151

Query:   160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGR 219
               +  +L+   A  +  D  G TPL  A      E A LL+  GA + +E+KE  T L  
Sbjct:   152 LKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKLLVTQGASIYIENKEEKTPLQV 211

Query:   220 ASNDFRPIL 228
             A      IL
Sbjct:   212 AKGGLGLIL 220

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;ISS

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=ISO;ISS

GO:0008134 "transcription factor binding" evidence=ISO

GO:0015629 "actin cytoskeleton" evidence=ISO

GO:0030307 "positive regulation of cell growth" evidence=ISO;ISS

GO:0031398 "positive regulation of protein ubiquitination" evidence=ISO;ISS

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=ISO;ISS

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO;ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISO;ISS

GO:0043409 "negative regulation of MAPK cascade" evidence=ISO;ISS

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=ISO;ISS

GO:0045111 "intermediate filament cytoskeleton" evidence=ISO

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=ISO;ISS

GO:0070682 "proteasome regulatory particle assembly" evidence=ISO;ISS

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=ISO;ISS

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=ISO

UNIPROTKB|F1P1R3 PSMD10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 80/197 (40%), Positives = 104/197 (52%)

Query:    44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
             D RT LH A S GH  V ++LL +      V   D+ GW P+H AAS G   IV+ L+ K
Sbjct:     2 DSRTALHWACSAGHAAVADLLLGLGVP---VGDKDDAGWTPLHIAASAGRDEIVKALIDK 58

Query:   104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
             GA +N  N  G T LHYAASK   +I  +L+  GA  ++ D    T LHR A+ GN  + 
Sbjct:    59 GAPINAVNQNGCTPLHYAASKNKQEIAIMLLENGADPDATDHFESTPLHRAAAKGNLKMI 118

Query:   164 ELLIEEGAEVDATDKAGQTPLMNAVICYNKEV--ALLLIRHGADVDVEDKEGYTVLGRAS 221
             ++L+   A V+  D  G TPL  A  C  + V  A LL+ HGA +  E+KE  T L  A 
Sbjct:   119 QILLRHNASVNIQDSEGNTPLHLA--CDEERVDEAKLLVSHGASIHTENKEELTPLKVAK 176

Query:   222 NDFRPILIDAAKAMLEG 238
                  IL    K M+EG
Sbjct:   177 GGLGAIL----KRMVEG 189

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043409 "negative regulation of MAPK cascade" evidence=IEA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IEA

GO:0070682 "proteasome regulatory particle assembly" evidence=IEA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

MGI|MGI:1858898 Psmd10 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 10" [Mus musculus (taxid:10090)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 80/189 (42%), Positives = 101/189 (53%)

Query:    41 RNDDD-RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
             R D D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ 
Sbjct:    35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKA 91

Query:   100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN 159
             LL KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD    TA+HR A+ GN
Sbjct:    92 LLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGN 151

Query:   160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGR 219
               +  +L+   A  +  D  G TPL  A      E A  L+  GA + +E+KE  T L  
Sbjct:   152 LKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQV 211

Query:   220 ASNDFRPIL 228
             A      IL
Sbjct:   212 AKGGLGLIL 220

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000502 "proteasome complex" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0030307 "positive regulation of cell growth" evidence=ISO

GO:0031398 "positive regulation of protein ubiquitination" evidence=ISO

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=ISO

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0043409 "negative regulation of MAPK cascade" evidence=ISO

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=ISO

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=ISO

GO:0070682 "proteasome regulatory particle assembly" evidence=ISO

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=ISO

ASPGD|ASPL0000061746 AN1209 [Emericella nidulans (taxid:162425)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 73/198 (36%), Positives = 112/198 (56%)

Query:    41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT---IV 97
             ++DDDR  +H A +  H  +VE+L+S  +    V   D   W P+  AAS+ N     I+
Sbjct:    36 KDDDDRLPIHWAVAYNHLPIVELLVSTKDFDPDVE--DGSCWTPLMIAASLRNAEGDPII 93

Query:    98 EMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST 157
             E+LL KGADVN K+  G+ ALH+A SK  +  V  L+        KDK G  ALHR A+ 
Sbjct:    94 ELLLRKGADVNAKSITGQNALHFATSKANITTVRTLLENKCSARVKDKRGQLALHRAAAI 153

Query:   158 GNSALCELLIEEG-AEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTV 216
             G++ + +LL++EG + V+ATD  G T L +A+   + + AL L++ GA+ D +D  G   
Sbjct:   154 GSTPIIQLLLKEGRSPVNATDNDGLTALHHAISEGHGDAALTLLKAGAEADKKDASGTLA 213

Query:   217 LGRASND-FRPILIDAAK 233
             +  A +   R  ++ AA+
Sbjct:   214 IDMAPDKKVRNYILQAAE 231

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005838 "proteasome regulatory particle" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0070682 "proteasome regulatory particle assembly" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

ASPGD|ASPL0000062824 AN1130 [Emericella nidulans (taxid:162425)]

 Score = 293 (108.2 bits), Expect = 1.3e-24, P = 1.3e-24
 Identities = 74/204 (36%), Positives = 112/204 (54%)

Query:    14 LFKAAETGDSSTFXXXXXXXXXXXXXXRNDDDRTLLHVAASCGHPEVVEILLSVDESANV 73
             L  AA TG  S                ++DD RT L  AAS G+  VV++LL   E    
Sbjct:   743 LSSAAATGHESVVRLLLKHGAQADS--KDDDCRTPLSYAASNGYESVVKLLL---EHGAR 797

Query:    74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
              ++ D++   P+  AAS G  ++V++LL  GA  + K+   +T L YAAS+G+  +V +L
Sbjct:   798 ADSKDDDFRTPLSYAASYGYESVVKLLLEHGARTDSKDKDSQTPLSYAASRGYESVVRIL 857

Query:   134 ISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNK 193
             +  GA+ NS+DK   T L   AS G+ ++  LL++ GA+ D+   +GQTPL  A    ++
Sbjct:   858 LENGARANSRDKDSHTPLSYAASKGHESVVRLLLQYGAQADSETSSGQTPLSYAASHGHE 917

Query:   194 EVALLLIRHGADVDVEDKEGYTVL 217
              V  LL+ HGA  + +DK G+T L
Sbjct:   918 FVVKLLLDHGAQTESKDKYGWTPL 941

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O75832	PSD10_HUMAN	No assigned EC number	0.4313	0.8235	0.8672	yes	no
Q54HW1	PSD10_DICDI	No assigned EC number	0.375	0.9243	0.9482	yes	no
Q10311	YD58_SCHPO	No assigned EC number	0.3444	0.8445	0.8589	yes	no
P50086	PSD10_YEAST	No assigned EC number	0.3410	0.8445	0.8815	yes	no
Q9Z2X2	PSD10_MOUSE	No assigned EC number	0.4228	0.8193	0.8441	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	238
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-40
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-39
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-31
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-27
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-27
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-25
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-25
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-23
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	8e-21
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-20
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-20
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-18
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-18
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	7e-18
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	6e-17
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-16
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-16
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	7e-16
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	8e-16
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	7e-15
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-13
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	6e-13
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	7e-13
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	2e-12
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	4e-12
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	6e-12
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	1e-11
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-11
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-10
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	3e-10
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-09
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-09
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-09
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	7e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-08
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	2e-08
pfam00023	33	pfam00023, Ank, Ankyrin repeat	6e-08
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	7e-08
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	9e-08
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	2e-07
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	3e-07
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	4e-07
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	4e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	6e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	7e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-06
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	4e-06
PHA02741	169	PHA02741, PHA02741, hypothetical protein; Provisio	4e-06
PHA02743	166	PHA02743, PHA02743, Viral ankyrin protein; Provisi	4e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	8e-06
PHA02989	494	PHA02989, PHA02989, ankyrin repeat protein; Provis	1e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-05
PHA02741	169	PHA02741, PHA02741, hypothetical protein; Provisio	2e-05
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	2e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-05
PHA02791	284	PHA02791, PHA02791, ankyrin-like protein; Provisio	4e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	4e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-04
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	2e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-04
PHA02716	764	PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provi	2e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	4e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	5e-04
smart00248	30	smart00248, ANK, ankyrin repeats	8e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.001
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.001
smart00248	30	smart00248, ANK, ankyrin repeats	0.001
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	0.002
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.002
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.002
PHA02743	166	PHA02743, PHA02743, Viral ankyrin protein; Provisi	0.003
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.003
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	0.004
PHA02791	284	PHA02791, PHA02791, ankyrin-like protein; Provisio	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  134 bits (338), Expect = 4e-40
 Identities = 62/126 (49%), Positives = 87/126 (69%)

Query: 75  NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
           NA DE+G  P+H AAS G++ +V++LL  GADVN K++ GRT LH AA  G L+IV+LL+
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 135 SRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
            +GA +N++DK G T LH  A  GN  + +LL++ GA+V+A DK G+TPL  A    + E
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLE 120

Query: 195 VALLLI 200
           V  LL+
Sbjct: 121 VVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  130 bits (330), Expect = 7e-39
 Identities = 61/127 (48%), Positives = 85/127 (66%), Gaps = 3/127 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R++D RT LH+AAS GH EVV++LL   E+   VNA D +G  P+H AA  G++ IV++L
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLL---ENGADVNAKDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L KGADVN ++  G T LH AA  G L +V+LL+  GA +N++DK G T LH  A  G+ 
Sbjct: 60  LEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHL 119

Query: 161 ALCELLI 167
            + +LL+
Sbjct: 120 EVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  111 bits (280), Expect = 2e-31
 Identities = 53/110 (48%), Positives = 74/110 (67%)

Query: 108 NLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLI 167
           N +++ GRT LH AAS G L++V+LL+  GA +N+KD  G T LH  A  G+  + +LL+
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 168 EEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVL 217
           E+GA+V+A DK G TPL  A    N +V  LL++HGADV+  DK+G T L
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPL 110

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  101 bits (254), Expect = 2e-27
 Identities = 51/121 (42%), Positives = 74/121 (61%), Gaps = 5/121 (4%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV 73
           L  AA  G     K L +      ++ +++D RT LH+AA  GH E+V++LL   E    
Sbjct: 11  LHLAASNGHLEVVKLLLENG--ADVNAKDNDGRTPLHLAAKNGHLEIVKLLL---EKGAD 65

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           VNA D++G  P+H AA  GN+ +V++LL  GADVN ++  GRT LH AA  G L++V+LL
Sbjct: 66  VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125

Query: 134 I 134
           +
Sbjct: 126 L 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score =  108 bits (271), Expect = 2e-27
 Identities = 61/188 (32%), Positives = 88/188 (46%), Gaps = 29/188 (15%)

Query: 42  NDDDRTLLHVAASCGH-----PEVVEILLSVDESANVVNAVDEEGWAPIHSAAS--IGNV 94
             ++ T LH  ++  +      E+V++LL     ANV NA D  G  P+  A S    + 
Sbjct: 65  TKNNSTPLHYLSNIKYNLTDVKEIVKLLLE--YGANV-NAPDNNGITPLLYAISKKSNSY 121

Query: 95  TIVEMLLSKGADVNLKNDGGRTALHYAASKGW--LKIVELLISRGAKINSKDKVGCTALH 152
           +IVE LL  GA+VN+KN  G   LH         LKI++LLI +G  IN+K++V      
Sbjct: 122 SIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRV------ 175

Query: 153 RGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKE 212
                        L+  G  ++  D  G TPL  AV   N E    L+  GA+ ++ +K 
Sbjct: 176 -----------NYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKY 224

Query: 213 GYTVLGRA 220
           G T L  A
Sbjct: 225 GDTPLHIA 232

Length = 422

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 95.4 bits (238), Expect = 2e-25
 Identities = 47/93 (50%), Positives = 64/93 (68%), Gaps = 2/93 (2%)

Query: 85  IHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           +H AA  GN+ +V++LL KGADVNL +    TALH AA  G L+IV+LL+  GA +N+KD
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 145 KVGCTALHRGASTGNSALCELLIEEGAEVDATD 177
           K G TALH  A  GN  + +LL+E GA+++  D
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 94.2 bits (235), Expect = 5e-25
 Identities = 44/96 (45%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 49  LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
           LH+AA  G+ E+V++LL      N+ +         +H AA  GN+ IV++LL  GADVN
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDT-----ALHLAARNGNLEIVKLLLEHGADVN 55

Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
            K+  G TALH AA  G L+IV+LL+  GA IN KD
Sbjct: 56  AKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 89.6 bits (223), Expect = 3e-23
 Identities = 42/93 (45%), Positives = 59/93 (63%), Gaps = 2/93 (2%)

Query: 118 LHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD 177
           LH AA  G L++V+LL+ +GA +N  D    TALH  A  GN  + +LL+E GA+V+A D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 178 KAGQTPLMNAVICYNKEVALLLIRHGADVDVED 210
           K G T L  A    N E+  LL+ HGAD++++D
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 89.9 bits (223), Expect = 8e-21
 Identities = 48/116 (41%), Positives = 68/116 (58%), Gaps = 2/116 (1%)

Query: 96  IVEMLLSKGADVNLKN-DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRG 154
           I ++LLS GAD+N+K+   G TALHYA      ++ ELL+S GA +N  DK   + LH  
Sbjct: 149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHA 208

Query: 155 ASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV-ICYNKEVALLLIRHGADVDVE 209
               N  +  +L+E GA  DA DK G TPL  +V  C + ++  LL+ HG DV+ +
Sbjct: 209 VKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAK 264

Length = 477

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 88.5 bits (219), Expect = 2e-20
 Identities = 61/185 (32%), Positives = 98/185 (52%), Gaps = 7/185 (3%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIV 97
           L + N  D ++L +   C   ++++ +L   +    VN  D E    +H A   G++  +
Sbjct: 86  LLIDNGVDTSILPI--PCIEKDMIKTIL---DCGIDVNIKDAELKTFLHYAIKKGDLESI 140

Query: 98  EMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST 157
           +ML   GADVN+++D G   +H A    +  I++LL+ +GA  N KD  G + LH  A  
Sbjct: 141 KMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEY 200

Query: 158 GNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVL 217
           G+ A  +LLI+ G  +    K G TPL NA+I +N+    LLI + A ++ +D +G T L
Sbjct: 201 GDYACIKLLIDHGNHIMNKCKNGFTPLHNAII-HNRSAIELLI-NNASINDQDIDGSTPL 258

Query: 218 GRASN 222
             A N
Sbjct: 259 HHAIN 263

Length = 434

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 87.8 bits (218), Expect = 3e-20
 Identities = 52/190 (27%), Positives = 89/190 (46%), Gaps = 29/190 (15%)

Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIG-----NVTIVEML 100
              L++A    + +VV+ILL  D  A++ ++       P+H  ++I         IV++L
Sbjct: 36  VLPLYLAKEARNIDVVKILL--DNGADINSSTKNN-STPLHYLSNIKYNLTDVKEIVKLL 92

Query: 101 LSKGADVNLKNDGGRTALHYAASK--GWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
           L  GA+VN  ++ G T L YA SK      IVE L+  GA +N K+  G   LH    + 
Sbjct: 93  LEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESN 152

Query: 159 NSAL--CELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTV 216
              L   +LLI++G +++A ++                    L+ +G  ++++D  G+T 
Sbjct: 153 KIDLKILKLLIDKGVDINAKNRVN-----------------YLLSYGVPINIKDVYGFTP 195

Query: 217 LGRASNDFRP 226
           L  A  +  P
Sbjct: 196 LHYAVYNNNP 205

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 83.9 bits (208), Expect = 1e-18
 Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 15/184 (8%)

Query: 45  DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNV-TIVEMLLSK 103
            +T LH+       +V +I+  + E+   VNA +  G+ P+H          ++++L+  
Sbjct: 47  GKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKA 106

Query: 104 GADVNLKNDGGRTALH-YAASKGWL--KIVELLISRGAKINSKDKVGCTALH-----RGA 155
           GADVN K+  GRT LH Y +    +  K++ LL+ +GA +N+ D  G T L      R A
Sbjct: 107 GADVNAKDKVGRTPLHVYLSGF-NINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNA 165

Query: 156 STGNSALCELLIEEGAEVDATDKAGQTPL--MNAVICYNKEVALLLIRHGADVDVEDKEG 213
              N  L  LLI+ GA+V A D   ++ L            +   LIR G D    D  G
Sbjct: 166 ---NVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLG 222

Query: 214 YTVL 217
            T L
Sbjct: 223 NTPL 226

Length = 471

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 82.7 bits (204), Expect = 2e-18
 Identities = 53/166 (31%), Positives = 91/166 (54%), Gaps = 3/166 (1%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           D  + LH A   G  + VE LL + + A+ V    ++G  P+H A  +  + I+++L+++
Sbjct: 67  DIESELHDAVEEGDVKAVEELLDLGKFADDV--FYKDGMTPLHLATILKKLDIMKLLIAR 124

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
           GAD ++ N    + LH A   G +K +ELLI   A ++ +D  GCT L    + G+ A+C
Sbjct: 125 GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAIC 184

Query: 164 ELLIEEGAEVDATDKAGQTPLMNAVICYNK-EVALLLIRHGADVDV 208
           ++L++ GA +D   K G    +   I  NK ++  L I+ GAD ++
Sbjct: 185 KMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI 230

Length = 413

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 81.6 bits (202), Expect = 7e-18
 Identities = 50/130 (38%), Positives = 70/130 (53%), Gaps = 6/130 (4%)

Query: 94  VTIVEMLLSKGADVNLKNDGGRTALHYAASKGW---LKIVELLISRGAKINSKDKVGCTA 150
           V  V  LL+ GADVN + + G+T LH            IV LL+  GA +N+ ++ G T 
Sbjct: 27  VEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTP 86

Query: 151 LHRGASTGNSA-LCELLIEEGAEVDATDKAGQTPLMN--AVICYNKEVALLLIRHGADVD 207
           LH       +  + +LLI+ GA+V+A DK G+TPL    +    N +V  LL+R GADV+
Sbjct: 87  LHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVN 146

Query: 208 VEDKEGYTVL 217
             D  G T L
Sbjct: 147 ALDLYGMTPL 156

Length = 471

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 78.8 bits (194), Expect = 6e-17
 Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 13/180 (7%)

Query: 43  DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLS 102
               T LH A       + E+LLS   + N+ +  +    +P+H A    N  IV +LL 
Sbjct: 166 HKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNN---SPLHHAVKHYNKPIVHILLE 222

Query: 103 KGADVNLKNDGGRTALHYAASKGW-LKIVELLISRGAKINSKDKV-GCTALHRGASTGNS 160
            GA  + ++  G T LH +        I++LL+  G  +N+K  + G TALH  +S  + 
Sbjct: 223 NGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALH--SSIKSE 280

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVI------CYNKEVALLLIRHGADVDVEDKEGY 214
              +LL+E GA++++ +    TPL +AV            ++ + +      D+++ EG+
Sbjct: 281 RKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILISNICLLKRIKPDIKNSEGF 340

Length = 477

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 77.4 bits (191), Expect = 2e-16
 Identities = 60/238 (25%), Positives = 88/238 (36%), Gaps = 50/238 (21%)

Query: 41  RNDDDRTLLHVAAS--CGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT--- 95
           ++   RT LHV  S    +P+V+ +LL   + A+V NA+D  G  P+       N     
Sbjct: 113 KDKVGRTPLHVYLSGFNINPKVIRLLL--RKGADV-NALDLYGMTPLAVLLKSRNANVEL 169

Query: 96  ----------------------------------IVEMLLSKGADVNLKNDGGRTALHYA 121
                                             IV  L+  G D    +  G T LH  
Sbjct: 170 LRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSM 229

Query: 122 ASKGWLK--IVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKA 179
           A+    K  +V  L+  G  IN++++ G T LH  A   N   C  LI  GA+++A    
Sbjct: 230 ATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSD 289

Query: 180 GQTPLMNAVI-CYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKAML 236
           G TPL   V     + V   L ++ +   V        L  AS     I  DA +  +
Sbjct: 290 GNTPLSLMVRNNNGRAVRAALAKNPSAETVAA-----TLNTASVAGGDIPSDATRLCV 342

Length = 471

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 74.9 bits (183), Expect = 3e-16
 Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 13/209 (6%)

Query: 2   DMDIDQTIKDKDLFKAAETGDSSTFKSLS-KQQLLKSLSLRNDDDRTLLHVAASCGHPEV 60
               + + K  +L+       +++   L  K  + + L+ R+ D R  LH AAS G  ++
Sbjct: 29  LDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKI 88

Query: 61  VEILLSVDESANVVNAVDEEGWAPIHSAA-----SIGNVTIVEMLLSKGA---DVNLKND 112
           V++LL+       VNA D +G  P+H AA       GN+ + ++LL  GA     NL+++
Sbjct: 89  VKLLLASGAD---VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE 145

Query: 113 GGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE 172
            G T LH+AA  G   IVELL+  GA  NS++  G TAL   A  G   L +LL+++G  
Sbjct: 146 DGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLH 205

Query: 173 VD-ATDKAGQTPLMNAVICYNKEVALLLI 200
           +             N        +  L+I
Sbjct: 206 LSLLKFNLEGVANANVSKRNILNLTSLII 234

Length = 235

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 75.7 bits (186), Expect = 7e-16
 Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 6/164 (3%)

Query: 59  EVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTAL 118
           E+ ++LLS     N+ +    +G   +H A    +  + E+LLS GA+VN+ +    + L
Sbjct: 148 EITKLLLSYGADINMKD--RHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPL 205

Query: 119 HYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST-GNSALCELLIEEGAEVDATD 177
           H+A       IV +L+  GA  +++DK G T LH       +  + +LL+E G +V+A  
Sbjct: 206 HHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKS 265

Query: 178 KA-GQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRA 220
              G T L +++   ++    LL+ +GAD++  +    T L  A
Sbjct: 266 YILGLTALHSSI--KSERKLKLLLEYGADINSLNSYKLTPLSSA 307

Length = 477

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 75.7 bits (186), Expect = 8e-16
 Identities = 65/221 (29%), Positives = 93/221 (42%), Gaps = 37/221 (16%)

Query: 49  LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGN-VTIVEMLLSKGA-- 105
           LH A    + +VV+ LL+   +   VN  D     P+H      N + + EM+ S     
Sbjct: 41  LHQAVEARNLDVVKSLLTRGHN---VNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCS 97

Query: 106 ---------------DVNL-------KNDGGRTA-LHYAASKGW-----LKIVELLISRG 137
                          +V +       +    +T  L Y   K        +I +LL+S G
Sbjct: 98  VFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYG 157

Query: 138 AKINSKDK-VGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVA 196
           A IN KD+  G TALH      +  L ELL+  GA V+  DK   +PL +AV  YNK + 
Sbjct: 158 ADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIV 217

Query: 197 LLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKAMLE 237
            +L+ +GA  D  DK G T L  +         D  K +LE
Sbjct: 218 HILLENGASTDARDKCGNTPLHISVG--YCKDYDILKLLLE 256

Length = 477

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 73.2 bits (179), Expect = 7e-15
 Identities = 55/179 (30%), Positives = 96/179 (53%), Gaps = 7/179 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT-IVEML 100
           N +D +LL    +    E +E  L + ++   VN++D+    P+H A+   +++ +V  L
Sbjct: 238 NKNDLSLLKAIRN----EDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKL 293

Query: 101 LSKGADVNLKNDGGRTALHYAASKGW-LKIVELLISRGAKINSKDKVGCTALHRGASTG- 158
           L +GADVN KN  G T L+  A  G+  + +  LI  GA +N+ D++  T LH+ ++   
Sbjct: 294 LERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDR 353

Query: 159 NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVL 217
           N  +   L+E GA V+A D   +TP+  A +  N  +   L+ +GAD++   ++  T L
Sbjct: 354 NKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTAL 412

Length = 682

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 68.2 bits (166), Expect = 3e-13
 Identities = 68/240 (28%), Positives = 100/240 (41%), Gaps = 46/240 (19%)

Query: 14  LFKAAETGDSSTFKSLSKQ-QLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESAN 72
           + K A +G+   +  +++  + +K +  R   D  L           + E+LL   E   
Sbjct: 124 ILKEAISGNDIHYDKINESIEYMKLIKERIQQDELL-----------IAEMLL---EGGA 169

Query: 73  VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE- 131
            VNA D     PIH AA  GN  +V +LLS GADVN+      + L  A     +  ++ 
Sbjct: 170 DVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKA 229

Query: 132 ----------------------------LLISRGAKINSKDKVGCTALHRGASTGN-SAL 162
                                       LL   G  +NS D    T LH  +   + S L
Sbjct: 230 IIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRL 289

Query: 163 CELLIEEGAEVDATDKAGQTPL-MNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
              L+E GA+V+A +  G+TPL + A   Y+ E    LI  GADV+  D+   T L +AS
Sbjct: 290 VPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQAS 349

Length = 682

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 66.9 bits (163), Expect = 6e-13
 Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 1/139 (0%)

Query: 80  EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
           +G +PI  A    +   +++L+  GA  ++K     + LH A  +G +K VE L+  G  
Sbjct: 34  DGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKF 93

Query: 140 INSK-DKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALL 198
            +    K G T LH         + +LLI  GA+ D  +    +PL  AV+  + +   L
Sbjct: 94  ADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL 153

Query: 199 LIRHGADVDVEDKEGYTVL 217
           LI H A +D+ED  G T L
Sbjct: 154 LIDHKACLDIEDCCGCTPL 172

Length = 413

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 67.0 bits (164), Expect = 7e-13
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 15/114 (13%)

Query: 47  TLLHVAASCGHP--EVVEILLS----VDESANV---------VNAVDEEGWAPIHSAASI 91
            LLH+         +++++L+     ++    V         +N  D  G+ P+H A   
Sbjct: 143 NLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYN 202

Query: 92  GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
            N   V+ LL  GA+ NL N  G T LH A      +I +LL++ G  I +  +
Sbjct: 203 NNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTIIE 256

Length = 422

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 65.7 bits (160), Expect = 2e-12
 Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 31/152 (20%)

Query: 87  SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV 146
           + AS GN  ++E LL    D ++ +  GRT LH AASKG+   V +L+     ++ +D  
Sbjct: 531 TVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDAN 590

Query: 147 GCTA---------------LHRGAS-----TGNSALCEL-----------LIEEGAEVDA 175
           G TA               L+  AS          LC             L+++G  VD+
Sbjct: 591 GNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDS 650

Query: 176 TDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
            D  G T L  A+   + ++  LLI +GADVD
Sbjct: 651 EDHQGATALQVAMAEDHVDMVRLLIMNGADVD 682

Length = 823

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 65.1 bits (158), Expect = 4e-12
 Identities = 57/163 (34%), Positives = 89/163 (54%), Gaps = 8/163 (4%)

Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH A++    +  +I++++ E    VNA D     PIH AA   NV I+  LL  GAD
Sbjct: 343 TPLHQASTLDRNK--DIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD 400

Query: 107 VNLKNDGGRTALHYA--ASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG-NSALC 163
           +   +    TALH+A   +  ++  V+ LI RGA +NSK+K   T LH          + 
Sbjct: 401 IEALSQKIGTALHFALCGTNPYMS-VKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVI 459

Query: 164 ELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADV 206
           E+L++ GA+V+A +   Q PL+ A + Y+  V +LL  +GA++
Sbjct: 460 EMLLDNGADVNAINIQNQYPLLIA-LEYHGIVNILL-HYGAEL 500

Length = 682

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 62.9 bits (152), Expect = 6e-12
 Identities = 55/200 (27%), Positives = 89/200 (44%), Gaps = 9/200 (4%)

Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
            LL +        +V +LL +    +  +      +  +    +     +  + L     
Sbjct: 7   ALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSEL-LLKLIVDRH 65

Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC--- 163
           +  ++  GR  LH AASKG  KIV+LL++ GA +N+KD  G T LH  A  GN       
Sbjct: 66  LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIE 125

Query: 164 --ELLIEEGAEVD---ATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLG 218
             +LL+E GA++D     D+ G TPL  A +  + ++  LL+  GAD +  +  G T L 
Sbjct: 126 VAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALD 185

Query: 219 RASNDFRPILIDAAKAMLEG 238
            A+ + R  L+         
Sbjct: 186 PAAKNGRIELVKLLLDKGLH 205

Length = 235

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 63.1 bits (153), Expect = 1e-11
 Identities = 51/153 (33%), Positives = 75/153 (49%), Gaps = 10/153 (6%)

Query: 83  APIHSAASIGNVTIVEMLLSKGA---DVNLKNDGGRTALHYAASKGWLKIVELLISRGA- 138
           + +H A   G+V  VE LL  G    DV  K+  G T LH A     L I++LLI+RGA 
Sbjct: 70  SELHDAVEEGDVKAVEELLDLGKFADDVFYKD--GMTPLHLATILKKLDIMKLLIARGAD 127

Query: 139 -KINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVAL 197
             I + DK   + LH     G+    ELLI+  A +D  D  G TPL+ A+   +  +  
Sbjct: 128 PDIPNTDKF--SPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICK 185

Query: 198 LLIRHGADVDVEDKEG-YTVLGRASNDFRPILI 229
           +L+  GA++D   K G    L  A  + +  ++
Sbjct: 186 MLLDSGANIDYFGKNGCVAALCYAIENNKIDIV 218

Length = 413

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 57.6 bits (140), Expect = 1e-11
 Identities = 26/54 (48%), Positives = 35/54 (64%)

Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLI 167
           GRTALH AA  G L++V+ L+ +G  IN  D+ G TALH  A  GN  + +LL+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 57.2 bits (139), Expect = 2e-11
 Identities = 23/54 (42%), Positives = 35/54 (64%)

Query: 81  GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
           G   +H AA  G + +V+ LL KG D+N  ++ G TALH AA  G L++++LL+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 55.7 bits (135), Expect = 2e-10
 Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 151 LHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVED 210
           LH  A  GN  L +LL+E+GA+V+  D    T L  A    N E+  LL+ HGADV+ +D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 211 KEGYTVL 217
           K+G T L
Sbjct: 59  KDGNTAL 65

Length = 91

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 59.1 bits (143), Expect = 3e-10
 Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 12/121 (9%)

Query: 127 LKIVELLISRGAKINSKDKVG----CTALHRGASTGNSAL--CELLIEEGAEVDATDKAG 180
             IV+L I+ GA +N  D       CT L          L   ++LIE GA+++  +  G
Sbjct: 51  TDIVKLFINLGANVNGLDNEYSTPLCTIL-SNIKDYKHMLDIVKILIENGADINKKNSDG 109

Query: 181 QTPLM----NAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKAML 236
           +TPL     N  I  N E+ L +I +GAD  + DK+G+T+L         I I+  K +L
Sbjct: 110 ETPLYCLLSNGYI-NNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLL 168

Query: 237 E 237
           E
Sbjct: 169 E 169

Length = 489

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 57.6 bits (139), Expect = 1e-09
 Identities = 47/174 (27%), Positives = 81/174 (46%), Gaps = 11/174 (6%)

Query: 6   DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILL 65
           D      +L   A TG+++  + L K +      + +   RT LH+AAS G+ + V +LL
Sbjct: 521 DDPNMASNLLTVASTGNAALLEELLKAK--LDPDIGDSKGRTPLHIAASKGYEDCVLVLL 578

Query: 66  SVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML--LSKGADVNLKNDGGRTALHYAAS 123
              + A  V+  D  G   + +A S  +  I  +L   +  +D +   D     L  AA 
Sbjct: 579 ---KHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGD----LLCTAAK 631

Query: 124 KGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD 177
           +  L  ++ L+ +G  ++S+D  G TAL    +  +  +  LLI  GA+VD  +
Sbjct: 632 RNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKAN 685

Length = 823

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 56.1 bits (135), Expect = 3e-09
 Identities = 46/169 (27%), Positives = 69/169 (40%), Gaps = 23/169 (13%)

Query: 72  NVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
           N +N   +E   P+  A   G+  IVE+ +  GAD+N  N      L  A   G   I++
Sbjct: 26  NCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIK 85

Query: 132 LLISRGA-----------------------KINSKDKVGCTALHRGASTGNSALCELLIE 168
           LLI  G                         +N KD    T LH     G+    ++L E
Sbjct: 86  LLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFE 145

Query: 169 EGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVL 217
            GA+V+  D  G  P+  A+     ++  LL+  GA  +V+D  G + L
Sbjct: 146 YGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPL 194

Length = 434

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 51.2 bits (123), Expect = 4e-09
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 67  VDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA 121
           ++     +NA D  G  P+H AA  G + +V+ LL  G D+NL++  G TAL  A
Sbjct: 2   LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 55.5 bits (134), Expect = 7e-09
 Identities = 46/144 (31%), Positives = 62/144 (43%), Gaps = 26/144 (18%)

Query: 34  LLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSV-----DESANVVNAVDE------EGW 82
           LL +LS R     TLLH A S  + + VE +L        +S  +  A D+       G 
Sbjct: 71  LLLNLSCRGAVGDTLLH-AISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGI 129

Query: 83  APIHSAASIGNVTIVEMLLSKGADVNLKNDG--------------GRTALHYAASKGWLK 128
             +H AA   N  IV++LL +GA V  +  G              G + L+ AA  G   
Sbjct: 130 TALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPS 189

Query: 129 IVELLISRGAKINSKDKVGCTALH 152
           IV LL    A I + D +G T LH
Sbjct: 190 IVALLSEDPADILTADSLGNTLLH 213

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 49.2 bits (118), Expect = 2e-08
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           RT LH AA  G  E+V+ LL   E    +N  DE+G   +H AA  GN+ ++++LL
Sbjct: 2   RTALHKAAISGRLELVKYLL---EKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 53.9 bits (129), Expect = 2e-08
 Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 6/148 (4%)

Query: 75  NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKG--WLKIVEL 132
           N  D++G  P+H A+ I N  IV MLL+ GAD N  +   +T L+Y +      ++ + L
Sbjct: 66  NETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINL 125

Query: 133 LISRGAKI-NSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICY 191
           L+  GAKI NS D+ GC  L    +  +  + + ++  G E    DK G+  +   ++  
Sbjct: 126 LVQYGAKINNSVDEEGCGPL-LACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSD 184

Query: 192 NKEVALL--LIRHGADVDVEDKEGYTVL 217
           N + + +  +++ G      D +G T L
Sbjct: 185 NPKASTISWMMKLGISPSKPDHDGNTPL 212

Length = 446

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 47.2 bits (113), Expect = 6e-08
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           G T LH AA  G L++V+LL+  GA +N++DK
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 52.2 bits (125), Expect = 7e-08
 Identities = 27/73 (36%), Positives = 39/73 (53%)

Query: 130 VELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVI 189
             +L++ GA  N +D  G T LH   + G+  +  +L+E GA+    DK G+TPL  A  
Sbjct: 98  ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEE 157

Query: 190 CYNKEVALLLIRH 202
              +EV  LL RH
Sbjct: 158 NGFREVVQLLSRH 170

Length = 664

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 51.8 bits (124), Expect = 9e-08
 Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 12/136 (8%)

Query: 94  VTIVEMLLSKGADVNLKNDGGRTAL-----HYAASKGWLKIVELLISRGAKINSKDKVGC 148
             IV++ ++ GA+VN  ++   T L     +    K  L IV++LI  GA IN K+  G 
Sbjct: 51  TDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGE 110

Query: 149 TALHRGASTG---NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNK---EVALLLIRH 202
           T L+   S G   N  +   +IE GA+    DK G T L   +   +    E+  LL+  
Sbjct: 111 TPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEK 170

Query: 203 GADVDV-EDKEGYTVL 217
           G D++   +KE Y  L
Sbjct: 171 GVDINTHNNKEKYDTL 186

Length = 489

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 3/102 (2%)

Query: 119 HYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDK 178
           H+      L + +LL   G +    D    + L   ASTGN+AL E L++   + D  D 
Sbjct: 500 HHKELHD-LNVGDLLGDNGGE--HDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDS 556

Query: 179 AGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRA 220
            G+TPL  A     ++  L+L++H  +V + D  G T L  A
Sbjct: 557 KGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNA 598

Length = 823

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 55/222 (24%), Positives = 88/222 (39%), Gaps = 45/222 (20%)

Query: 1   MDMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDD--DRTLLHVAASCGHP 58
              +   + ++K    AAE GD ++       +  K L++   D   R+ L VAA     
Sbjct: 8   PAEESPLSDEEKAFLPAAERGDLASVYR--DLEEPKKLNINCPDRLGRSALFVAAIENEN 65

Query: 59  -EVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLS-------KGADVNLK 110
            E+ E+LL++             G   +H A S+  V  VE +L        K   + L 
Sbjct: 66  LELTELLLNLSCRG-------AVGDTLLH-AISLEYVDAVEAILLHLLAAFRKSGPLELA 117

Query: 111 NDG-------GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRG--------- 154
           ND        G TALH AA +   +IV+LL+ RGA + ++         +          
Sbjct: 118 NDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPAR--ACGDFFVKSQGVDSFYHG 175

Query: 155 -------ASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVI 189
                  A  G+ ++  LL E+ A++   D  G T L   V+
Sbjct: 176 ESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVM 217

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 49.9 bits (119), Expect = 4e-07
 Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 4/88 (4%)

Query: 48  LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADV 107
           L  +AAS G      ILL         N  D +G  P+H A + G+V +V +LL  GAD 
Sbjct: 86  LCQLAAS-GDAVGARILL---TGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP 141

Query: 108 NLKNDGGRTALHYAASKGWLKIVELLIS 135
            L +  G+T L  A   G+ ++V+LL  
Sbjct: 142 TLLDKDGKTPLELAEENGFREVVQLLSR 169

Length = 664

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 48.7 bits (116), Expect = 4e-07
 Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 9/153 (5%)

Query: 72  NVVNAVDEEGWAPIHSAASIGNVT--IVEMLLSKGADVNLKNDG-GRTALHYAASKGW-- 126
             VN  ++    PI S      V   I++ L+  GADVN K      +ALH+  S     
Sbjct: 42  KFVNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNV 101

Query: 127 -LKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL--CELLIEEGAEVDATDKAGQTP 183
             +I+++LI  G+ I  +D+ G   LH      N  +   +LLI+ G      D      
Sbjct: 102 EPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNI 161

Query: 184 LMNAVICYN-KEVALLLIRHGADVDVEDKEGYT 215
           L + ++ ++ K++   L   G D++  +K GY 
Sbjct: 162 LYSYILFHSDKKIFDFLTSLGIDINETNKSGYN 194

Length = 209

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 45.0 bits (107), Expect = 6e-07
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 166 LIEEGAE-VDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRA 220
           L+E G   ++ATD  G TPL  A      E+   L++ G D+++ D +G T L  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 44.9 bits (107), Expect = 7e-07
 Identities = 21/52 (40%), Positives = 31/52 (59%)

Query: 149 TALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLI 200
           TALH+ A +G   L + L+E+G +++ TD+ G T L  A    N EV  LL+
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 44.3 bits (105), Expect = 1e-06
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 100 LLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALH 152
           LL  G  D+N  +  G T LH AA  G L++V+ L+  G  +N +D  G TAL 
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALD 54

Length = 56

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 42.5 bits (101), Expect = 3e-06
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 80  EGWAPIHSAASIGNVTIVEMLLSKGADVNLKND 112
           +G  P+H AA  G++ +V++LL  GADVN ++ 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 46.8 bits (111), Expect = 4e-06
 Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 11/127 (8%)

Query: 96  IVEMLLSKGADVNLKNDGGRTALHYAASKGW---LKIVELLISRGAKINSKDKVGCTALH 152
           IV++L+  GAD+N KN  G T L+   S G+   L+I+  +I  GA     DK G T L 
Sbjct: 91  IVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQ 150

Query: 153 RGASTGNSA---LCELLIEEGAEVDA-TDKAGQTPL----MNAVICYNKEVALLLIRHGA 204
               + +     + +LL+E+G +++   +K     L       +   + ++  L + +G 
Sbjct: 151 VYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGF 210

Query: 205 DVDVEDK 211
            ++ E+K
Sbjct: 211 IINKENK 217

Length = 489

>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional

 Score = 45.4 bits (107), Expect = 4e-06
 Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 21/151 (13%)

Query: 69  ESANVVNAVDE-------EGWAPIHSAASIGNVTIVEMLL------SKGADVNLKNDGGR 115
           ES + +  ++E       EG    H AA  G   I+             A +N  +D G+
Sbjct: 2   ESPHFMTCLEEMIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQ 61

Query: 116 TALHYAASK--GWL--KIVELLISRGAKINSKDKV-GCTALHRGASTGNSALCELLI-EE 169
             +H AA K    L  +I++ LI  GA IN+++ + G TALH  A   +  L E L  + 
Sbjct: 62  MCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQP 121

Query: 170 GAEVDATDKAGQTPLMNAVICYNKEVALLLI 200
           G ++   +   ++P   A+   N++VA++ I
Sbjct: 122 GIDLHFCNADNKSPFELAID--NEDVAMMQI 150

Length = 169

>gnl|CDD|222925 PHA02743, PHA02743, Viral ankyrin protein; Provisional

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 7/100 (7%)

Query: 114 GRTALHYAA----SKGWLKIVELLISRGAKINSKD-KVGCTALHRGASTGNSALCELLIE 168
           GR   H  A    +   +KI ELL++ GA IN+++   G T LH  AST N  L E L  
Sbjct: 57  GRQCTHMVAWYDRANAVMKI-ELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCR 115

Query: 169 E-GAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
           + G  + A +   +T    A    ++ +  +L  +GA  D
Sbjct: 116 QLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCD 155

Length = 166

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 46.0 bits (109), Expect = 8e-06
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 155 ASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGY 214
           A++G++    +L+  GA+ +  D  G+TPL  A    + +V  +L+  GAD  + DK+G 
Sbjct: 90  AASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGK 149

Query: 215 TVLGRA-SNDFRPI 227
           T L  A  N FR +
Sbjct: 150 TPLELAEENGFREV 163

Length = 664

>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 12/132 (9%)

Query: 97  VEMLLSKGADVNLKNDGGRTALHYAASKGW-LKIVELLISRGAKINSK---DKVGCTALH 152
           +E LL  G DVN +  G    L Y   K   +KIV+LLI  GA +N K   +   C  L 
Sbjct: 19  LEFLLRTGFDVNEEYRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKGYIETPLCAVLR 78

Query: 153 RGASTGNSA--LCELLIEEGAEVDATDKAGQTPLM----NAVICYNKEVALLLIRHGADV 206
               T N    + +LL++ GA+++     G +P++    N+ I  N ++   L+  G +V
Sbjct: 79  NREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNI-NNCDMLRFLLSKGINV 137

Query: 207 -DVEDKEGYTVL 217
            DV++  GY +L
Sbjct: 138 NDVKNSRGYNLL 149

Length = 494

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 1/131 (0%)

Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
           A   G + I   LL  G + N +   G + +  A      + ++LL+  GA  + K    
Sbjct: 9   AILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDI 68

Query: 148 CTALHRGASTGNSALCELLIEEGAEV-DATDKAGQTPLMNAVICYNKEVALLLIRHGADV 206
            + LH     G+    E L++ G    D   K G TPL  A I    ++  LLI  GAD 
Sbjct: 69  ESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP 128

Query: 207 DVEDKEGYTVL 217
           D+ + + ++ L
Sbjct: 129 DIPNTDKFSPL 139

Length = 413

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 39.8 bits (94), Expect = 2e-05
 Identities = 15/32 (46%), Positives = 18/32 (56%)

Query: 180 GQTPLMNAVICYNKEVALLLIRHGADVDVEDK 211
           G TPL  A    + EV  LL+  GADV+  DK
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 8/108 (7%)

Query: 34  LLKSLSLRNDDDRTLLHVAASCGHPEV---VEILLSVDESANVVNAVDEEGWAPIHSAAS 90
           L + ++ +N +     H AA CG  ++       +  D  A  +NA D+ G   IH AA 
Sbjct: 10  LEEMIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAE 69

Query: 91  IGN----VTIVEMLLSKGADVNLKND-GGRTALHYAASKGWLKIVELL 133
                    I++ L+  GAD+N +    G TALH AA +    + E L
Sbjct: 70  KHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWL 117

Length = 169

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 5/103 (4%)

Query: 111 NDGGRTALHYAASKGWL---KIVELLISRGAKINSKDKV-GCTALHRGASTGNSALCELL 166
           N  G+  +H  ++       + ++LL+  GA IN K++V G T LH    T N  L   L
Sbjct: 52  NRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWL 111

Query: 167 IEE-GAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDV 208
             + G  ++  + A +TP   A   ++ ++  +L   GA   V
Sbjct: 112 CNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCKV 154

Length = 154

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 39.9 bits (94), Expect = 4e-05
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 14 LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILL 65
          L KAA +G     K L   +    ++  ++D  T LH+AA  G+ EV+++LL
Sbjct: 5  LHKAAISGRLELVKYLL--EKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional

 Score = 43.5 bits (102), Expect = 4e-05
 Identities = 22/64 (34%), Positives = 38/64 (59%)

Query: 84  PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
           P+H AA++ +  IV++LL  G D +  +D G TAL+YA   G ++ V+L + +  ++   
Sbjct: 64  PLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY 123

Query: 144 DKVG 147
            K G
Sbjct: 124 GKTG 127

Length = 284

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 39.2 bits (92), Expect = 4e-05
 Identities = 15/28 (53%), Positives = 19/28 (67%)

Query: 114 GRTALHYAASKGWLKIVELLISRGAKIN 141
           G T LH AA  G L++V+LL+  GA IN
Sbjct: 2   GNTPLHLAARNGNLELVKLLLEHGADIN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 40.3 bits (95), Expect = 7e-05
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 8/75 (10%)

Query: 4  DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLK---SLSLRNDDDRTLLHVAASCGHPEV 60
          D++    D  L  AA  G+    K      LL+    ++ ++ D  T LH+AA  G+ E+
Sbjct: 22 DVNLGDTDTALHLAARNGNLEIVK-----LLLEHGADVNAKDKDGNTALHLAARNGNLEI 76

Query: 61 VEILLSVDESANVVN 75
          V++LL      N+ +
Sbjct: 77 VKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 24/146 (16%)

Query: 92  GNVTIVEMLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD------ 144
           G++  +E ++ +KG  +N+  D   T L  A   G  KIVEL I  GA IN  +      
Sbjct: 12  GDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHP 71

Query: 145 -----KVGCTA-----LHRGASTG-------NSALCELLIEEGAEVDATDKAGQTPLMNA 187
                K+G        +  G  T           + + +++ G +V+  D   +T L  A
Sbjct: 72  LLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYA 131

Query: 188 VICYNKEVALLLIRHGADVDVEDKEG 213
           +   + E   +L  +GADV++ED  G
Sbjct: 132 IKKGDLESIKMLFEYGADVNIEDDNG 157

Length = 434

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 133 LISRG-AKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
           L+  G   +N+ D  G T LH  A  G   L + L++ G +++  D  G T L  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 44/143 (30%), Positives = 62/143 (43%), Gaps = 26/143 (18%)

Query: 93  NVTIVEMLLSKGADVNLKN-------------DGGRTALH-YAASKGW-LKIVELLISRG 137
           N+   E  LS  A  N KN              G    LH Y   KG   + VE L+ RG
Sbjct: 3   NIMSAEYYLSLYAKYNSKNLDVFRNMLQAIEPSGNYHILHAYCGIKGLDERFVEELLHRG 62

Query: 138 AKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLM------NAVICY 191
              N  D  G   LH  +   N+ +  +L+  GA+ +A DK  +TPL       + VI  
Sbjct: 63  YSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVI-- 120

Query: 192 NKEVALLLIRHGADVDVE-DKEG 213
             E   LL+++GA ++   D+EG
Sbjct: 121 --ERINLLVQYGAKINNSVDEEG 141

Length = 446

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.1 bits (87), Expect = 2e-04
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVN 75
          D  T LH+AA  GH EVV++LL      N  +
Sbjct: 1  DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 17/114 (14%)

Query: 93  NVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK--IVELLISRGAKINSKDKVGCTA 150
           ++++V   L  G  ++ K+  GRT LH    +  +   I++LL   G  +N  D +G T 
Sbjct: 296 DISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTV 355

Query: 151 LHR-----------GASTGNSALCEL---LIEEGAEVDATDKAGQTPLMNAVIC 190
           LH               T N    ++   LI  GA++ A +  G TPL  + IC
Sbjct: 356 LHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPL-TSYIC 408

Length = 764

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 36.4 bits (85), Expect = 4e-04
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 147 GCTALHRGASTGNSALCELLIEEGAEVDATDK 178
           G T LH  A  G+  + +LL+E GA+V+A DK
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 40.4 bits (94), Expect = 5e-04
 Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 3/76 (3%)

Query: 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
           + E+L+E GA+V+A D    TP+  A    N ++  LL+ +GADV++   +  +VL  A 
Sbjct: 160 IAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAV 219

Query: 222 NDFRPILIDAAKAMLE 237
           +      ID  KA+++
Sbjct: 220 DSKN---IDTIKAIID 232

Length = 682

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 35.6 bits (83), Expect = 8e-04
 Identities = 16/28 (57%), Positives = 21/28 (75%)

Query: 114 GRTALHYAASKGWLKIVELLISRGAKIN 141
           GRT LH AA  G L++V+LL+ +GA IN
Sbjct: 2   GRTPLHLAAENGNLEVVKLLLDKGADIN 29

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 34/161 (21%)

Query: 84  PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASK------------------- 124
           P+H A    N+ +V+ LL++G +VN  +    T LH    +                   
Sbjct: 40  PLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVF 99

Query: 125 -GWLKIVE------------LLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
              + I +            +L +R   I + D V      +      + + +LL+  GA
Sbjct: 100 YTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDII-EAEITKLLLSYGA 158

Query: 172 EVDATDK-AGQTPLMNAVICYNKEVALLLIRHGADVDVEDK 211
           +++  D+  G T L  A    ++ +  LL+ +GA+V++ DK
Sbjct: 159 DINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDK 199

Length = 477

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R+ D RT LH+A + GH +VV +LL   E       +D++G  P+  A   G   +V++L
Sbjct: 111 RDYDGRTPLHIACANGHVQVVRVLL---EFGADPTLLDKDGKTPLELAEENGFREVVQLL 167

Query: 101 LS 102
             
Sbjct: 168 SR 169

Length = 664

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 34.9 bits (81), Expect = 0.001
 Identities = 15/30 (50%), Positives = 22/30 (73%)

Query: 80  EGWAPIHSAASIGNVTIVEMLLSKGADVNL 109
           +G  P+H AA  GN+ +V++LL KGAD+N 
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 5/96 (5%)

Query: 127 LKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLM- 185
           +K ++ +I      +   K     L+      N  + ++L++ GA+++++ K   TPL  
Sbjct: 15  VKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHY 74

Query: 186 ----NAVICYNKEVALLLIRHGADVDVEDKEGYTVL 217
                  +   KE+  LL+ +GA+V+  D  G T L
Sbjct: 75  LSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPL 110

Length = 422

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH 86
           + +  T LH+AA  G  E+V+ LL      N+    D +G   + 
Sbjct: 12 TDGNGNTPLHLAAKYGALELVQWLLKPGVDLNL---RDSDGLTALD 54

Length = 56

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 34.2 bits (79), Expect = 0.002
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 180 GQTPLMNAVICYNKEVALLLIRHGADVDV 208
           G TPL  A    N E+  LL+ HGAD++ 
Sbjct: 2   GNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|222925 PHA02743, PHA02743, Viral ankyrin protein; Provisional

 Score = 36.7 bits (85), Expect = 0.003
 Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 5/144 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAA--SIGN-VTIVE 98
            D+  T L +  +    E++E+   +    ++++  D  G    H  A     N V  +E
Sbjct: 18  EDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIE 77

Query: 99  MLLSKGADVNLKNDG-GRTALHYAASKGWLKIVELLISR-GAKINSKDKVGCTALHRGAS 156
           +L++ GAD+N +  G G T LH AAS    ++ E L  + G  + + +    TA H    
Sbjct: 78  LLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYK 137

Query: 157 TGNSALCELLIEEGAEVDATDKAG 180
             +  + E+L   GA  D     G
Sbjct: 138 MRDRRMMEILRANGAVCDDPLSIG 161

Length = 166

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 34.2 bits (79), Expect = 0.003
 Identities = 14/29 (48%), Positives = 21/29 (72%)

Query: 80  EGWAPIHSAASIGNVTIVEMLLSKGADVN 108
           +G  P+H AA  GN+ +V++LL  GAD+N
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADIN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 42/200 (21%), Positives = 74/200 (37%), Gaps = 47/200 (23%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGN---VTIV 97
           +N D  T L+   S G+   +EILL + E+      +D++G+  +       +   + I+
Sbjct: 105 KNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEII 164

Query: 98  EMLLSKGADVNL-KNDGGRTALH----YAASKGWLKIVELLISRG--------------- 137
           ++LL KG D+N   N      LH    Y   +    I++L +  G               
Sbjct: 165 KLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFM 224

Query: 138 ------------------------AKINSKDKVGCTALHRGASTGNSALCELLIEEGAEV 173
                                     IN  D++G   L+   S  N  + E L++ G ++
Sbjct: 225 EYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDI 284

Query: 174 DATDKAGQTPLMNAVICYNK 193
           +   + G T L  A    +K
Sbjct: 285 NIITELGNTCLFTAFENESK 304

Length = 489

>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional

 Score = 37.3 bits (86), Expect = 0.004
 Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 3/113 (2%)

Query: 78  DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG 137
           D  G + ++ A +  NV +V  LL+ GA  NL  +     LH AA+    KIV++L+  G
Sbjct: 27  DVHGHSALYYAIADNNVRLVCTLLNAGALKNLLEN--EFPLHQAATLEDTKIVKILLFSG 84

Query: 138 AKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG-QTPLMNAVI 189
              +  D  G TAL+    +GN    +L +++   +    K G +T   +AV+
Sbjct: 85  MDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVM 137

Length = 284

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	238
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02859	209	ankyrin repeat protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02859	209	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02795	437	ankyrin-like protein; Provisional	99.97
PHA02795	437	ankyrin-like protein; Provisional	99.97
KOG0508	615	consensus Ankyrin repeat protein [General function	99.97
PHA02792	631	ankyrin-like protein; Provisional	99.97
PHA02730	672	ankyrin-like protein; Provisional	99.97
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.97
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.97
PHA02730	672	ankyrin-like protein; Provisional	99.97
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.96
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.96
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.96
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.95
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.94
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.94
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.94
KOG0514	452	consensus Ankyrin repeat protein [General function	99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.93
PHA02743	166	Viral ankyrin protein; Provisional	99.93
PHA02792	631	ankyrin-like protein; Provisional	99.93
PHA02743	166	Viral ankyrin protein; Provisional	99.92
PHA02741	169	hypothetical protein; Provisional	99.91
PHA02741	169	hypothetical protein; Provisional	99.91
KOG0514	452	consensus Ankyrin repeat protein [General function	99.9
PHA02884	300	ankyrin repeat protein; Provisional	99.9
PHA02884	300	ankyrin repeat protein; Provisional	99.9
PHA02736	154	Viral ankyrin protein; Provisional	99.9
PHA02736	154	Viral ankyrin protein; Provisional	99.89
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.87
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.87
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.87
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.87
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.86
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.85
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.84
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.83
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.83
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.83
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.82
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.81
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.81
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.74
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.7
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.7
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.69
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.64
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.61
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.57
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.55
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.54
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.53
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.53
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.53
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.52
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.43
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.11
PF13606	30	Ank_3: Ankyrin repeat	99.08
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.05
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	99.03
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.03
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.99
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.99
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.91
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.9
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.87
PF13606	30	Ank_3: Ankyrin repeat	98.85
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.74
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.73
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.69
KOG0522	560	consensus Ankyrin repeat protein [General function	98.67
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.63
KOG0522	560	consensus Ankyrin repeat protein [General function	98.63
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.61
KOG0511	516	consensus Ankyrin repeat protein [General function	98.54
KOG2384	223	consensus Major histocompatibility complex protein	98.47
KOG0511	516	consensus Ankyrin repeat protein [General function	98.37
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.31
KOG2384	223	consensus Major histocompatibility complex protein	98.26
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.19
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.13
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.11
KOG2505	591	consensus Ankyrin repeat protein [General function	97.98
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	97.6
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.5
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	97.4
KOG2505	591	consensus Ankyrin repeat protein [General function	97.28
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	97.18
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.03
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	96.46
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.68
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	95.42
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	92.57
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	89.38
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	84.58

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9e-42  Score=226.32  Aligned_cols=218  Identities=47%  Similarity=0.644  Sum_probs=193.3

Q ss_pred             hHHHHHHHcCChHHHHHHHHHHhhhhcCCCCC-CCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHH
Q 026440           12 KDLFKAAETGDSSTFKSLSKQQLLKSLSLRND-DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS   90 (238)
Q Consensus        12 ~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~-~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~   90 (238)
                      ...+.++......-++.+++.. +..++.++. +|+||||.||..|+.+++.+|+.. .+ ..++..|-.||||||+|++
T Consensus         5 ~~~~~~~~~~~~~kveel~~s~-~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq-~n-v~~ddkDdaGWtPlhia~s   81 (226)
T KOG4412|consen    5 SLGKAICENCEEFKVEELIQSD-PKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQ-PN-VKPDDKDDAGWTPLHIAAS   81 (226)
T ss_pred             chHHHHHhhchHHHHHHHHhcC-hhhhhccccccCCceeeeeeecCchhHHHHHHhc-CC-CCCCCccccCCchhhhhhh
Confidence            3456677777788888888777 455666655 899999999999999999999962 22 2256678899999999999


Q ss_pred             cCCHHHHHHHHHc-CCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhc
Q 026440           91 IGNVTIVEMLLSK-GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEE  169 (238)
Q Consensus        91 ~~~~~~~~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  169 (238)
                      .|+-++++-|+.. |++++..+..|.|+||+|+..|+.++..+|+++|+.++.+|..+.||||-|+..|..+++++|+..
T Consensus        82 ~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~  161 (226)
T KOG4412|consen   82 NGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQ  161 (226)
T ss_pred             cCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhc
Confidence            9999999999998 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHHH-Hhc
Q 026440          170 GAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKA-MLE  237 (238)
Q Consensus       170 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~-~~~  237 (238)
                      |+.++.+|..|+||||.|...++.+....|+++|++.++.|++| ||+..+..    +..+.+|. ||+
T Consensus       162 ~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~~----~l~~alk~~~le  225 (226)
T KOG4412|consen  162 GAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIACN----ELLEALKEQMLE  225 (226)
T ss_pred             CCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHHH----HHHHHHHHHhhc
Confidence            99999999999999999988899999999999999999999999 99877765    45566655 665

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.8e-40  Score=261.08  Aligned_cols=220  Identities=24%  Similarity=0.264  Sum_probs=197.6

Q ss_pred             cChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHH
Q 026440           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAA   89 (238)
Q Consensus        10 ~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~   89 (238)
                      .+..|+.|+..|+.++++.|++.+  .+++..+..|.||||+|+..|+.+++++|++.|..   .+..+..+.||||.|+
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g--~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~~~t~L~~A~   76 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIG--INPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAI---PDVKYPDIESELHDAV   76 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCC--CCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---ccccCCCcccHHHHHH
Confidence            357899999999999999999886  46777788899999999999999999999998876   4445678899999999


Q ss_pred             HcCCHHHHHHHHHcCCCCc-ccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHh
Q 026440           90 SIGNVTIVEMLLSKGADVN-LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIE  168 (238)
Q Consensus        90 ~~~~~~~~~~Ll~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  168 (238)
                      ..|+.+++++|++.|.... ..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||.|+..|+.+++++|++
T Consensus        77 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~  156 (413)
T PHA02875         77 EEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID  156 (413)
T ss_pred             HCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999987654 345678999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCC-chhhccccccchHHHHHHHH
Q 026440          169 EGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGY-TVLGRASNDFRPILIDAAKA  234 (238)
Q Consensus       169 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~-tpl~~a~~~~~~~~~~~~~~  234 (238)
                      +|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|. ||+++|+..++.+++++|..
T Consensus       157 ~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~  223 (413)
T PHA02875        157 HKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIK  223 (413)
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988774 78888999999888877643

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.1e-39  Score=242.98  Aligned_cols=213  Identities=17%  Similarity=0.163  Sum_probs=184.8

Q ss_pred             hhhhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcH
Q 026440            5 IDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAP   84 (238)
Q Consensus         5 ~~~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~   84 (238)
                      ..+..+.++||+|+..|+.++++.|++.+.  +.+..  ++.||||+|+..|+.+++++|+..|.+   ++.++..|+||
T Consensus        25 ~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga--~~n~~--d~~TpLh~Aa~~g~~eiV~lLL~~Gad---vn~~d~~G~Tp   97 (284)
T PHA02791         25 KADVHGHSALYYAIADNNVRLVCTLLNAGA--LKNLL--ENEFPLHQAATLEDTKIVKILLFSGMD---DSQFDDKGNTA   97 (284)
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCcC--CCcCC--CCCCHHHHHHHCCCHHHHHHHHHCCCC---CCCCCCCCCCH
Confidence            345678899999999999999999998873  33433  478999999999999999999998877   66778899999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcccCCCCc-hHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHhhCCHHH
Q 026440           85 IHSAASIGNVTIVEMLLSKGADVNLKNDGGR-TALHYAASKGWLKIVELLISRGAKINSKD-KVGCTALHRGASTGNSAL  162 (238)
Q Consensus        85 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~-~~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~t~l~~a~~~~~~~~  162 (238)
                      ||+|+..++.+++++|+++|++++.++..|+ ||||+|+..|+.+++++|++++.+.  .+ ..|.||||+|+..|+.++
T Consensus        98 Lh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~ei  175 (284)
T PHA02791         98 LYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDM  175 (284)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHH
Confidence            9999999999999999999999988887774 8999999999999999999987543  22 247899999999999999


Q ss_pred             HHHHHhcCCCCCccccCCCcH-HHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHH
Q 026440          163 CELLIEEGAEVDATDKAGQTP-LMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAK  233 (238)
Q Consensus       163 ~~~Ll~~~~~~~~~~~~~~t~-l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~  233 (238)
                      +++|+++|++++.++..|.|| ||+|+..++.+++++|+++|++++.+|.+| +|+      ++.|++++|.
T Consensus       176 v~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-~~l------~~~e~~~~ll  240 (284)
T PHA02791        176 MILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN-VLL------DDAEIAKMII  240 (284)
T ss_pred             HHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-ccC------CCHHHHHHHH
Confidence            999999999999999999877 999999999999999999999999999865 555      5555555543

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.5e-40  Score=267.29  Aligned_cols=224  Identities=26%  Similarity=0.301  Sum_probs=180.0

Q ss_pred             hhhhccChHHHH-----HHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHH--HcCCHHHHHHHHhhcccccccccc
Q 026440            5 IDQTIKDKDLFK-----AAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAA--SCGHPEVVEILLSVDESANVVNAV   77 (238)
Q Consensus         5 ~~~~~~~~~l~~-----a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~--~~~~~~~~~~Ll~~~~~~~~~~~~   77 (238)
                      .....+.+++|.     |+..|+.++++.|++.+  .+++..+..|.||||+|+  ..|+.+++++|++.|.+   ++..
T Consensus        63 ~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~g--a~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~---~~~~  137 (480)
T PHA03100         63 SSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYG--ANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGAN---VNIK  137 (480)
T ss_pred             CccccCcCHHHHHHHHHHHhhchHHHHHHHHHCC--CCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCC---CCcc
Confidence            334455667777     77777777777777766  345667777888888888  78888888888877666   5556


Q ss_pred             cCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC------Cc
Q 026440           78 DEEGWAPIHSAASIG--NVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG------CT  149 (238)
Q Consensus        78 ~~~~~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~------~t  149 (238)
                      +..|.||||+|+..+  +.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+..+      .|
T Consensus       138 ~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t  217 (480)
T PHA03100        138 NSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFET  217 (480)
T ss_pred             CCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHh
Confidence            677888888888888  7888888888888888777788888888888888888888888888887777777      78


Q ss_pred             HHHHHHhhCC--HHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchH
Q 026440          150 ALHRGASTGN--SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPI  227 (238)
Q Consensus       150 ~l~~a~~~~~--~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~  227 (238)
                      |+|.|+..++  .+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|+..++.+
T Consensus       218 ~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~  297 (480)
T PHA03100        218 PLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKE  297 (480)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHH
Confidence            8888888888  88888888888888888888889999999888899999999999998888888999999998888877


Q ss_pred             HHHHHH
Q 026440          228 LIDAAK  233 (238)
Q Consensus       228 ~~~~~~  233 (238)
                      +++++.
T Consensus       298 iv~~Ll  303 (480)
T PHA03100        298 IFKLLL  303 (480)
T ss_pred             HHHHHH
Confidence            776654

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.6e-39  Score=259.65  Aligned_cols=219  Identities=27%  Similarity=0.419  Sum_probs=183.2

Q ss_pred             chhhhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhccccc-----------
Q 026440            4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESAN-----------   72 (238)
Q Consensus         4 ~~~~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~-----------   72 (238)
                      +.....+.++|+.|+..|+.++|++|++.+  .+++..+..|.||||.|+..|+.+++++|++.|.+..           
T Consensus        29 n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~G--a~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~  106 (434)
T PHA02874         29 NISVDETTTPLIDAIRSGDAKIVELFIKHG--ADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDM  106 (434)
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHH
Confidence            344566778999999999999999999877  4667778889999999999999999999998765432           


Q ss_pred             ---------ccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 026440           73 ---------VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK  143 (238)
Q Consensus        73 ---------~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~  143 (238)
                               .++..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++..
T Consensus       107 i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~  186 (434)
T PHA02874        107 IKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVK  186 (434)
T ss_pred             HHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCC
Confidence                     24556778999999999999999999999999999988889999999999999999999999999999888


Q ss_pred             CCCCCcHHHHHHhhCCHHHHHHHHhcCCCC-------------------------------CccccCCCcHHHHHHHhC-
Q 026440          144 DKVGCTALHRGASTGNSALCELLIEEGAEV-------------------------------DATDKAGQTPLMNAVICY-  191 (238)
Q Consensus       144 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~-------------------------------~~~~~~~~t~l~~a~~~~-  191 (238)
                      +..|.||||.|+..|+.+++++|++.|+++                               +.++..|.||||+|+..+ 
T Consensus       187 ~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh~A~~~~~  266 (434)
T PHA02874        187 DNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAINPPC  266 (434)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHHHHHhcCC
Confidence            888999999999999999999999887654                               444556777777777654 


Q ss_pred             CHHHHHHHHhcCCCCccCCCCCCchhhcccccc
Q 026440          192 NKEVALLLIRHGADVDVEDKEGYTVLGRASNDF  224 (238)
Q Consensus       192 ~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~  224 (238)
                      +.+++++|+++|++++.+|..|.||+++|.+.+
T Consensus       267 ~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~~~  299 (434)
T PHA02874        267 DIDIIDILLYHKADISIKDNKGENPIDTAFKYI  299 (434)
T ss_pred             cHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhC
Confidence            678888888888888888888888888887665

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.2e-39  Score=259.46  Aligned_cols=213  Identities=26%  Similarity=0.337  Sum_probs=186.8

Q ss_pred             hccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhccc-----------------
Q 026440            8 TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDES-----------------   70 (238)
Q Consensus         8 ~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~-----------------   70 (238)
                      ....++||+|+..|+.++|+.|++.+  .+++..+..|.||||+||..|+.+.+++|++.+..                 
T Consensus        35 ~~~~tPLh~A~~~g~~e~vk~Ll~~g--advn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~  112 (477)
T PHA02878         35 LIPFIPLHQAVEARNLDVVKSLLTRG--HNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNR  112 (477)
T ss_pred             ccCcchHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcC
Confidence            34567899999999999999999987  57888899999999999998877666655542110                 


Q ss_pred             --------------------------------------------ccccccccCC-CCcHHHHHHHcCCHHHHHHHHHcCC
Q 026440           71 --------------------------------------------ANVVNAVDEE-GWAPIHSAASIGNVTIVEMLLSKGA  105 (238)
Q Consensus        71 --------------------------------------------~~~~~~~~~~-~~t~l~~a~~~~~~~~~~~Ll~~~~  105 (238)
                                                                  +..++..+.. |.||||+|+..|+.+++++|++.|+
T Consensus       113 ~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~ga  192 (477)
T PHA02878        113 NVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGA  192 (477)
T ss_pred             CHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCC
Confidence                                                        0113445556 9999999999999999999999999


Q ss_pred             CCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhh-CCHHHHHHHHhcCCCCCcccc-CCCcH
Q 026440          106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST-GNSALCELLIEEGAEVDATDK-AGQTP  183 (238)
Q Consensus       106 ~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~-~~~~~~~~Ll~~~~~~~~~~~-~~~t~  183 (238)
                      +++.++..|.||||.|+..++.+++++|++.|++++..|..|.||||+|+.. ++.+++++|+++|++++.++. .|.||
T Consensus       193 d~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~Tp  272 (477)
T PHA02878        193 NVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTA  272 (477)
T ss_pred             CCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCH
Confidence            9999999999999999999999999999999999999999999999999976 689999999999999998875 79999


Q ss_pred             HHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhcccccc
Q 026440          184 LMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDF  224 (238)
Q Consensus       184 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~  224 (238)
                      ||+|  .++.+++++|+++|++++.+|..|.||+++|+..+
T Consensus       273 Lh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~  311 (477)
T PHA02878        273 LHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQY  311 (477)
T ss_pred             HHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHc
Confidence            9999  57889999999999999999999999999998743

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.6e-39  Score=260.75  Aligned_cols=224  Identities=30%  Similarity=0.427  Sum_probs=210.3

Q ss_pred             hhhhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHH-----HHHcCCHHHHHHHHhhcccccccccccC
Q 026440            5 IDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHV-----AASCGHPEVVEILLSVDESANVVNAVDE   79 (238)
Q Consensus         5 ~~~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~-----A~~~~~~~~~~~Ll~~~~~~~~~~~~~~   79 (238)
                      .....+.++||.|+..|+.++|+.|++.+  .+++..+..+.||||+     |+..++.+++++|++.|++   ++..+.
T Consensus        30 ~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g--~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~---i~~~d~  104 (480)
T PHA03100         30 YSYKKPVLPLYLAKEARNIDVVKILLDNG--ADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGAN---VNAPDN  104 (480)
T ss_pred             hhhcccchhhhhhhccCCHHHHHHHHHcC--CCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCC---CCCCCC
Confidence            34556778999999999999999999987  5677788889999999     9999999999999998887   577788


Q ss_pred             CCCcHHHHHH--HcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcC--CHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 026440           80 EGWAPIHSAA--SIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKG--WLKIVELLISRGAKINSKDKVGCTALHRGA  155 (238)
Q Consensus        80 ~~~t~l~~a~--~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~  155 (238)
                      .|.||||+|+  ..|+.+++++|++.|++++..+..|.||||+|+..+  +.+++++|+++|++++..+..|.||||.|+
T Consensus       105 ~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~  184 (480)
T PHA03100        105 NGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAV  184 (480)
T ss_pred             CCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHH
Confidence            9999999999  999999999999999999999999999999999999  999999999999999999999999999999


Q ss_pred             hhCCHHHHHHHHhcCCCCCccccCC------CcHHHHHHHhCC--HHHHHHHHhcCCCCccCCCCCCchhhccccccchH
Q 026440          156 STGNSALCELLIEEGAEVDATDKAG------QTPLMNAVICYN--KEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPI  227 (238)
Q Consensus       156 ~~~~~~~~~~Ll~~~~~~~~~~~~~------~t~l~~a~~~~~--~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~  227 (238)
                      ..|+.+++++|+++|++++..+..|      .||+|.|+..++  .+++++|+++|++++.+|..|.||||+|+..++.+
T Consensus       185 ~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~  264 (480)
T PHA03100        185 EKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPE  264 (480)
T ss_pred             HhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            9999999999999999999998888      899999999999  99999999999999999999999999999999988


Q ss_pred             HHHHHH
Q 026440          228 LIDAAK  233 (238)
Q Consensus       228 ~~~~~~  233 (238)
                      ++++|.
T Consensus       265 iv~~Ll  270 (480)
T PHA03100        265 FVKYLL  270 (480)
T ss_pred             HHHHHH
Confidence            777764

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.1e-38  Score=237.75  Aligned_cols=204  Identities=19%  Similarity=0.198  Sum_probs=183.0

Q ss_pred             HcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHH
Q 026440           19 ETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE   98 (238)
Q Consensus        19 ~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~   98 (238)
                      ..++.++++.|++.+    .+..|..|.||||+|+..|+.+++++|++.+...   +..  .+.||||+|+..|+.++++
T Consensus         8 ~~~~~~~~~~Lis~~----a~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~---n~~--d~~TpLh~Aa~~g~~eiV~   78 (284)
T PHA02791          8 TWKSKQLKSFLSSKD----AFKADVHGHSALYYAIADNNVRLVCTLLNAGALK---NLL--ENEFPLHQAATLEDTKIVK   78 (284)
T ss_pred             ccCHHHHHHHHHhCC----CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCC---cCC--CCCCHHHHHHHCCCHHHHH
Confidence            457788999998865    2467889999999999999999999999988763   332  4689999999999999999


Q ss_pred             HHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC-cHHHHHHhhCCHHHHHHHHhcCCCCCccc
Q 026440           99 MLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGC-TALHRGASTGNSALCELLIEEGAEVDATD  177 (238)
Q Consensus        99 ~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~-t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  177 (238)
                      +|++.|++++.++..|.||||+|+..|+.+++++|++.|++++..+..|. ||||.|+..++.+++++|++++.+.  .+
T Consensus        79 lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d  156 (284)
T PHA02791         79 ILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FD  156 (284)
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cc
Confidence            99999999999999999999999999999999999999999998888874 8999999999999999999986543  23


Q ss_pred             -cCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCch-hhccccccchHHHHHHH
Q 026440          178 -KAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTV-LGRASNDFRPILIDAAK  233 (238)
Q Consensus       178 -~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tp-l~~a~~~~~~~~~~~~~  233 (238)
                       ..|.||||+|+..|+.+++++|+++|++++.+|..|.|| ||+|+..++.++++.|.
T Consensus       157 ~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl  214 (284)
T PHA02791        157 LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALF  214 (284)
T ss_pred             cccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHH
Confidence             248999999999999999999999999999999999987 99999999988887764

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.5e-38  Score=252.81  Aligned_cols=210  Identities=30%  Similarity=0.452  Sum_probs=190.5

Q ss_pred             hHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHc
Q 026440           12 KDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASI   91 (238)
Q Consensus        12 ~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~   91 (238)
                      ..+..|+.+|+++.++.|++.. +..++..+..|.||||.|+..|+.+++++|++.|.+   ++..+..|.|||+.|+..
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~-~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~---~n~~~~~~~t~L~~A~~~   78 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNK-GNCINISVDETTTPLIDAIRSGDAKIVELFIKHGAD---INHINTKIPHPLLTAIKI   78 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHc
Confidence            4789999999999999999876 456777788899999999999999999999998877   566778899999999999


Q ss_pred             CCHHHHHHHHHcCCC-----------------------CcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Q 026440           92 GNVTIVEMLLSKGAD-----------------------VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGC  148 (238)
Q Consensus        92 ~~~~~~~~Ll~~~~~-----------------------~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~  148 (238)
                      |+.+++++|+++|++                       ++.++..|.||||+|+..|+.+++++|++.|++++..+..|.
T Consensus        79 ~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~  158 (434)
T PHA02874         79 GAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGC  158 (434)
T ss_pred             CCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCC
Confidence            999999999987654                       455677899999999999999999999999999999999999


Q ss_pred             cHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccc
Q 026440          149 TALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFR  225 (238)
Q Consensus       149 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~  225 (238)
                      ||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||.|+..+.
T Consensus       159 tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~  235 (434)
T PHA02874        159 YPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR  235 (434)
T ss_pred             CHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh
Confidence            99999999999999999999999999999999999999999999999999999998888777777777777776554

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.7e-38  Score=256.91  Aligned_cols=227  Identities=26%  Similarity=0.294  Sum_probs=158.5

Q ss_pred             ccchhhhccChHHHHHHHcC---ChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcC-CHHHHHHHHhhcccccccccc
Q 026440            2 DMDIDQTIKDKDLFKAAETG---DSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG-HPEVVEILLSVDESANVVNAV   77 (238)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g---~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~-~~~~~~~Ll~~~~~~~~~~~~   77 (238)
                      |++..+..+.++||.|+..|   +.++++.|++.+  .+++.++..|.||||+|+..| +.+++++|++.|.+   ++..
T Consensus        39 ~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~G--adin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~---in~~  113 (471)
T PHA03095         39 DVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAG--ADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGAD---VNAK  113 (471)
T ss_pred             CcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCC---CCCC
Confidence            34455556666666666666   666666666655  355566666666666666666 46666666666655   4555


Q ss_pred             cCCCCcHHHHHH--HcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHc-------------------------------
Q 026440           78 DEEGWAPIHSAA--SIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASK-------------------------------  124 (238)
Q Consensus        78 ~~~~~t~l~~a~--~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~-------------------------------  124 (238)
                      +..|.||||+|+  ..++.+++++|++.|++++..+..|.||||+|+..                               
T Consensus       114 ~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~  193 (471)
T PHA03095        114 DKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHH  193 (471)
T ss_pred             CCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            566666666666  33455666666666666665555555555555443                               


Q ss_pred             ------CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCH--HHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHH
Q 026440          125 ------GWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS--ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVA  196 (238)
Q Consensus       125 ------~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~--~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  196 (238)
                            +..++++.|++.|++++..|..|.||||+|+..++.  .+++.|+..|++++.++..|.||||+|+..|+.+++
T Consensus       194 ~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v  273 (471)
T PHA03095        194 HLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRAC  273 (471)
T ss_pred             HHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence                  334455555555555555566666666666666653  566777888999999999999999999999999999


Q ss_pred             HHHHhcCCCCccCCCCCCchhhccccccchHHHHHHH
Q 026440          197 LLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAK  233 (238)
Q Consensus       197 ~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~  233 (238)
                      ++|+++|++++.+|.+|.||+++|+.+++.++++.+.
T Consensus       274 ~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL  310 (471)
T PHA03095        274 RRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAAL  310 (471)
T ss_pred             HHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHH
Confidence            9999999999999999999999999999988877664

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.3e-38  Score=249.84  Aligned_cols=217  Identities=28%  Similarity=0.415  Sum_probs=195.6

Q ss_pred             ccchhhhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCC
Q 026440            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (238)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~   81 (238)
                      |++.....+.++||.|+..|+.++++.|++.+  .+.+..+..+.||||.|+..|+.+++++|++.+....  +..+..|
T Consensus        27 ~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g--a~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~g  102 (413)
T PHA02875         27 NPNFEIYDGISPIKLAMKFRDSEAIKLLMKHG--AIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFAD--DVFYKDG  102 (413)
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCC--CCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCccc--ccccCCC
Confidence            34455567899999999999999999999987  3455667789999999999999999999999776532  3345679


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHH
Q 026440           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA  161 (238)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~  161 (238)
                      .||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+
T Consensus       103 ~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~e  182 (413)
T PHA02875        103 MTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIA  182 (413)
T ss_pred             CCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCccccCC-CcHHHHHHHhCCHHHHHHHHhcCCCCccC---CCCCCchhhcccc
Q 026440          162 LCELLIEEGAEVDATDKAG-QTPLMNAVICYNKEVALLLIRHGADVDVE---DKEGYTVLGRASN  222 (238)
Q Consensus       162 ~~~~Ll~~~~~~~~~~~~~-~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~---~~~g~tpl~~a~~  222 (238)
                      ++++|++.|++++..+..| .||+|+|+..++.+++++|+++|++++..   +..|.||++++..
T Consensus       183 iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~~  247 (413)
T PHA02875        183 ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILDMICN  247 (413)
T ss_pred             HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCchHHHHHHHh
Confidence            9999999999999988877 58999999999999999999999999876   5678899987653

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.6e-38  Score=252.86  Aligned_cols=213  Identities=26%  Similarity=0.340  Sum_probs=170.1

Q ss_pred             HHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcC---CHHHHHHHHhhcccccccccccCCCCcHHHHHHHc
Q 026440           15 FKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG---HPEVVEILLSVDESANVVNAVDEEGWAPIHSAASI   91 (238)
Q Consensus        15 ~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~---~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~   91 (238)
                      ..+...+++++|++|++.+  .+++..+..|.||||+|+..+   +.+++++|++.|.+   ++..+..|.||||+|+..
T Consensus        19 ~~~~~~~~~~~v~~Ll~~g--a~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gad---in~~~~~g~TpLh~A~~~   93 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAG--ADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGAD---VNAPERCGFTPLHLYLYN   93 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcC--CCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHc
Confidence            5678999999999999887  578888999999999999999   99999999999887   677788999999999999


Q ss_pred             C-CHHHHHHHHHcCCCCcccCCCCchHHHHHH--HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhC--CHHHHHHH
Q 026440           92 G-NVTIVEMLLSKGADVNLKNDGGRTALHYAA--SKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG--NSALCELL  166 (238)
Q Consensus        92 ~-~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~--~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~L  166 (238)
                      + +.+++++|+++|++++.++..|.||||+|+  ..++.+++++|++.|++++..+..|.||+|+|+..+  +.+++++|
T Consensus        94 ~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~L  173 (471)
T PHA03095         94 ATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLL  173 (471)
T ss_pred             CCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHH
Confidence            9 599999999999999999999999999999  456789999999999999988888888888777654  45666666


Q ss_pred             HhcCCCCCccccCCCcHHHHHH-----------------------------------HhCCH--HHHHHHHhcCCCCccC
Q 026440          167 IEEGAEVDATDKAGQTPLMNAV-----------------------------------ICYNK--EVALLLIRHGADVDVE  209 (238)
Q Consensus       167 l~~~~~~~~~~~~~~t~l~~a~-----------------------------------~~~~~--~~~~~Ll~~~~~~~~~  209 (238)
                      +++|++++..+..|.||||+++                                   ..++.  .+++.|++.|++++.+
T Consensus       174 l~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~  253 (471)
T PHA03095        174 IDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINAR  253 (471)
T ss_pred             HHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCc
Confidence            6666555555555555555554                                   44432  3455556666666667


Q ss_pred             CCCCCchhhccccccchHHHHHH
Q 026440          210 DKEGYTVLGRASNDFRPILIDAA  232 (238)
Q Consensus       210 ~~~g~tpl~~a~~~~~~~~~~~~  232 (238)
                      |..|.||||+|+..++.+++++|
T Consensus       254 d~~g~TpLh~A~~~~~~~~v~~L  276 (471)
T PHA03095        254 NRYGQTPLHYAAVFNNPRACRRL  276 (471)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHH
Confidence            76777777777777666555554

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=2.8e-37  Score=245.45  Aligned_cols=196  Identities=18%  Similarity=0.245  Sum_probs=113.3

Q ss_pred             cchhhhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCC--HHHHHHHHhhcccccccc-cccC
Q 026440            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGH--PEVVEILLSVDESANVVN-AVDE   79 (238)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~--~~~~~~Ll~~~~~~~~~~-~~~~   79 (238)
                      ++..+..+.++||+|+..|+.++|+.|++.+  .+++.+|..|.||||+|+..++  .+++++|++.|.+   ++ ..+.
T Consensus        65 vn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~G--Adin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gad---in~~~d~  139 (446)
T PHA02946         65 PNETDDDGNYPLHIASKINNNRIVAMLLTHG--ADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAK---INNSVDE  139 (446)
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHHCc--CCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC---cccccCC
Confidence            3344455556666666666666666666554  3455556666666666655442  4556666655554   22 2345


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcC--CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhh
Q 026440           80 EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKG--WLKIVELLISRGAKINSKDKVGCTALHRGAST  157 (238)
Q Consensus        80 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~  157 (238)
                      .|.|||+ |+..++.+++++|++.|++++..+..|.||||.|+..+  ..+++++|++.|++++..|..|.||||+|+..
T Consensus       140 ~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~  218 (446)
T PHA02946        140 EGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSK  218 (446)
T ss_pred             CCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence            5666664 33445566666666666666666666666666655443  34566666666666666666666666666655


Q ss_pred             C--CHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCC-HHHHHHHHhcCCC
Q 026440          158 G--NSALCELLIEEGAEVDATDKAGQTPLMNAVICYN-KEVALLLIRHGAD  205 (238)
Q Consensus       158 ~--~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~-~~~~~~Ll~~~~~  205 (238)
                      +  +.+++++|+. |++++.++..|.||||+|+..++ .+++++|+++|++
T Consensus       219 ~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~  268 (446)
T PHA02946        219 TVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNV  268 (446)
T ss_pred             CCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCC
Confidence            4  4556665553 56666666666666666666555 3566666665543

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.1e-37  Score=255.83  Aligned_cols=226  Identities=20%  Similarity=0.238  Sum_probs=178.2

Q ss_pred             ccchhhhccChHHHHHHHcCCh--HHHHHHHHHHhhhhcCCCCCCCchHHHHH---------------------------
Q 026440            2 DMDIDQTIKDKDLFKAAETGDS--STFKSLSKQQLLKSLSLRNDDDRTLLHVA---------------------------   52 (238)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~--~~v~~l~~~~~~~~~~~~~~~~~t~L~~A---------------------------   52 (238)
                      |++..+..+.++||.|+..|+.  ++|+.|++.+  .+++.++..|.||||+|                           
T Consensus       204 DVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~G--ADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~  281 (764)
T PHA02716        204 NVNLQNNHLITPLHTYLITGNVCASVIKKIIELG--GDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNI  281 (764)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccc
Confidence            4556667788888998888854  8888888877  57778888888888865                           


Q ss_pred             ----------HHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHH--cCCHHHHHHHHHcCCCCcccCCCCchHHHH
Q 026440           53 ----------ASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS--IGNVTIVEMLLSKGADVNLKNDGGRTALHY  120 (238)
Q Consensus        53 ----------~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~--~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~  120 (238)
                                +..|+.+++++|++.|.+   ++.++..|+||||+|+.  .++.+++++|++.|++++.+|..|.||||+
T Consensus       282 ~~~L~~~i~AA~~g~leiVklLLe~GAd---IN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~  358 (764)
T PHA02716        282 PMILHSYITLARNIDISVVYSFLQPGVK---LHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHT  358 (764)
T ss_pred             hhhhHHHHHHHHcCCHHHHHHHHhCCCc---eeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHH
Confidence                      334667788888877766   66678889999998764  357889999999999999888899999998


Q ss_pred             HHH--------------cCCHHHHHHHHHcCCCCCCCCCCCCcHHHH----HHhhCCHHHHHHHHhcCC-----------
Q 026440          121 AAS--------------KGWLKIVELLISRGAKINSKDKVGCTALHR----GASTGNSALCELLIEEGA-----------  171 (238)
Q Consensus       121 a~~--------------~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~----a~~~~~~~~~~~Ll~~~~-----------  171 (238)
                      |+.              .++.+++++|+++|++++..+..|.||||.    |...+..+++++|++.++           
T Consensus       359 A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~  438 (764)
T PHA02716        359 YLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQD  438 (764)
T ss_pred             HHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhh
Confidence            765              257899999999999999999999999983    223456778777776532           


Q ss_pred             --------------------------------------------------CCCccccCCCcHHHHHHHhCCH-----HHH
Q 026440          172 --------------------------------------------------EVDATDKAGQTPLMNAVICYNK-----EVA  196 (238)
Q Consensus       172 --------------------------------------------------~~~~~~~~~~t~l~~a~~~~~~-----~~~  196 (238)
                                                                        +++..+..|+||||+|+..++.     +++
T Consensus       439 ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~  518 (764)
T PHA02716        439 LLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSF  518 (764)
T ss_pred             hhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHH
Confidence                                                              1233466799999999998876     455


Q ss_pred             HHHHhcCCCCccCCCCCCchhhccccccch-----HHHHHH
Q 026440          197 LLLIRHGADVDVEDKEGYTVLGRASNDFRP-----ILIDAA  232 (238)
Q Consensus       197 ~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~-----~~~~~~  232 (238)
                      ++|+++|++++.+|.+|+||||+|+.+++.     ++++.+
T Consensus       519 k~LL~~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~L  559 (764)
T PHA02716        519 VYLLSIQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNI  559 (764)
T ss_pred             HHHHhCCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHH
Confidence            999999999999999999999999999976     555544

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=6.7e-37  Score=243.32  Aligned_cols=215  Identities=22%  Similarity=0.286  Sum_probs=189.9

Q ss_pred             ChHHHHHH--HcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHH
Q 026440           11 DKDLFKAA--ETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA   88 (238)
Q Consensus        11 ~~~l~~a~--~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a   88 (238)
                      ...||.++  ..++.++|+.|++.+  .+++.++..|.||||+|+..|+.+++++|+++|++   ++.++..|.||||+|
T Consensus        38 ~~~Lh~~~~~~~~~~~iv~~Ll~~G--advn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAd---in~~d~~g~TpLh~A  112 (446)
T PHA02946         38 YHILHAYCGIKGLDERFVEELLHRG--YSPNETDDDGNYPLHIASKINNNRIVAMLLTHGAD---PNACDKQHKTPLYYL  112 (446)
T ss_pred             ChHHHHHHHhcCCCHHHHHHHHHCc--CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC---CCCCCCCCCCHHHHH
Confidence            34566654  455778999999987  57888999999999999999999999999999887   677889999999999


Q ss_pred             HHcC--CHHHHHHHHHcCCCCcc-cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCC--HHHH
Q 026440           89 ASIG--NVTIVEMLLSKGADVNL-KNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN--SALC  163 (238)
Q Consensus        89 ~~~~--~~~~~~~Ll~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~  163 (238)
                      +..+  ..+++++|+++|++++. .+..|.|||+ |+..++.+++++|++.|++++..|..|.||||.|+..++  .+++
T Consensus       113 ~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v  191 (446)
T PHA02946        113 SGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTI  191 (446)
T ss_pred             HHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHH
Confidence            8765  47999999999999985 5788999997 666789999999999999999999999999999887654  6899


Q ss_pred             HHHHhcCCCCCccccCCCcHHHHHHHhC--CHHHHHHHHhcCCCCccCCCCCCchhhccccccch-HHHHHH
Q 026440          164 ELLIEEGAEVDATDKAGQTPLMNAVICY--NKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRP-ILIDAA  232 (238)
Q Consensus       164 ~~Ll~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~-~~~~~~  232 (238)
                      ++|+++|++++.+|.+|.||||+|+..+  +.+++++|++ |++++.+|..|.||||+|+..++. ++++.+
T Consensus       192 ~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~L  262 (446)
T PHA02946        192 SWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKL  262 (446)
T ss_pred             HHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHH
Confidence            9999999999999999999999999876  7899999985 899999999999999999998874 555544

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=6.3e-38  Score=244.27  Aligned_cols=212  Identities=35%  Similarity=0.452  Sum_probs=198.1

Q ss_pred             hccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhccccccccccc-CCCCcHHH
Q 026440            8 TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD-EEGWAPIH   86 (238)
Q Consensus         8 ~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~~~t~l~   86 (238)
                      +..-..++.|++.|+++.|+.+++.. ..+++..|.+|.|+||.|+.+++.+++++|+++|++   ++... ..+.||||
T Consensus        42 d~~~~~~v~A~q~G~l~~v~~lve~~-g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gad---vn~~gG~l~stPLH  117 (600)
T KOG0509|consen   42 DSSLDDIVKATQYGELETVKELVESE-GESVNNPDREGVTLLHWAAINNRLDVARYLISHGAD---VNAIGGVLGSTPLH  117 (600)
T ss_pred             chhhhhhhhHhhcchHHHHHHHHhhc-CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCC---ccccCCCCCCCcch
Confidence            44456899999999999999999985 478888899999999999999999999999999998   45444 57889999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHH
Q 026440           87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL  166 (238)
Q Consensus        87 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  166 (238)
                      +|+++|+..+++.|+++|++++.+|.+|.+|+|.|++.++.-.+-+++.++++++.+|.+|+|||++|+.++....+..|
T Consensus       118 WAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~L  197 (600)
T KOG0509|consen  118 WAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRL  197 (600)
T ss_pred             HHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998889999


Q ss_pred             HhcCCCCCccc-cCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccc
Q 026440          167 IEEGAEVDATD-KAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASND  223 (238)
Q Consensus       167 l~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~  223 (238)
                      +..++.+...| ..|+||||+|+..|+.+.++.|++.|++.+.+|.+|.||+++|...
T Consensus       198 L~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  198 LKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            99999999887 8899999999999999999978888899999999999999999766

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1e-37  Score=207.14  Aligned_cols=185  Identities=36%  Similarity=0.466  Sum_probs=165.9

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhhcccccccccccC-CCCcHHHHHHHcCCHHHHHHHH-HcCCCCcccCCCCchHHHHHH
Q 026440           45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDE-EGWAPIHSAASIGNVTIVEMLL-SKGADVNLKNDGGRTALHYAA  122 (238)
Q Consensus        45 ~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~Ll-~~~~~~~~~~~~~~~~l~~a~  122 (238)
                      +.++.+.+|...-..-++-+++..  +..++.++- +|+||||+||+.|+.+++.+|+ +.+..++..|..|+||||+|+
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~--~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~   80 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSD--PKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAA   80 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcC--hhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhh
Confidence            456778888877777777776633  323455444 9999999999999999999999 567888888999999999999


Q ss_pred             HcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHh
Q 026440          123 SKGWLKIVELLISR-GAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIR  201 (238)
Q Consensus       123 ~~~~~~~~~~l~~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  201 (238)
                      +.|+-++++-|+.+ |++++..+..|.|+||+|+..|..+++++|+++|+.++.+|..|.||||-|+..|+.+++++|+.
T Consensus        81 s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~  160 (226)
T KOG4412|consen   81 SNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLIS  160 (226)
T ss_pred             hcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHh
Confidence            99999999999999 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCccCCCCCCchhhccccccchHHHHH
Q 026440          202 HGADVDVEDKEGYTVLGRASNDFRPILIDA  231 (238)
Q Consensus       202 ~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~  231 (238)
                      .|+.++..|+.|+||||.|.-.++.+....
T Consensus       161 ~~a~~n~qDk~G~TpL~~al~e~~~d~a~l  190 (226)
T KOG4412|consen  161 QGAPLNTQDKYGFTPLHHALAEGHPDVAVL  190 (226)
T ss_pred             cCCCCCcccccCccHHHHHHhccCchHHHH
Confidence            999999999999999999988888766543

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=2.8e-36  Score=247.56  Aligned_cols=192  Identities=23%  Similarity=0.269  Sum_probs=134.7

Q ss_pred             hhccChHHHHHHHc--CChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCC--HHHHHHHHhhcccccccccccCCCC
Q 026440            7 QTIKDKDLFKAAET--GDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGH--PEVVEILLSVDESANVVNAVDEEGW   82 (238)
Q Consensus         7 ~~~~~~~l~~a~~~--g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~--~~~~~~Ll~~~~~~~~~~~~~~~~~   82 (238)
                      +..+.++||.|+.+  ++.+++++|++.+  .+++.++..|.||||+|+..|+  .+++++|++.|++   ++.++..|+
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLLe~G--ADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GAD---VN~kD~~G~  248 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLCNNG--VNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGD---MDMKCVNGM  248 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCC---CCCCCCCCC
Confidence            45566777776543  5677888887776  4677777778888888887774  3778888877766   555667778


Q ss_pred             cHHHHHH-------------------------------------HcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHH--
Q 026440           83 APIHSAA-------------------------------------SIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS--  123 (238)
Q Consensus        83 t~l~~a~-------------------------------------~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~--  123 (238)
                      ||||.|+                                     ..|+.+++++|++.|++++.++..|.||||+|+.  
T Consensus       249 TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~  328 (764)
T PHA02716        249 SPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRH  328 (764)
T ss_pred             CHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHh
Confidence            8877542                                     3356677777777777777777777778777654  


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHh--------------hCCHHHHHHHHhcCCCCCccccCCCcHHHHH--
Q 026440          124 KGWLKIVELLISRGAKINSKDKVGCTALHRGAS--------------TGNSALCELLIEEGAEVDATDKAGQTPLMNA--  187 (238)
Q Consensus       124 ~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~--------------~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a--  187 (238)
                      .++.+++++|++.|++++..|..|.||||.|+.              .++.+++++|+++|++++.++..|.||||.+  
T Consensus       329 ~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~  408 (764)
T PHA02716        329 NISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYIC  408 (764)
T ss_pred             CCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHH
Confidence            346777777777777777777777778777654              2567777777777777777777777887732  


Q ss_pred             --HHhCCHHHHHHHHhcC
Q 026440          188 --VICYNKEVALLLIRHG  203 (238)
Q Consensus       188 --~~~~~~~~~~~Ll~~~  203 (238)
                        ...+..+++++|++.|
T Consensus       409 ~a~n~~~~dIvklLis~~  426 (764)
T PHA02716        409 TAQNYMYYDIIDCLISDK  426 (764)
T ss_pred             HHHhcChHHHHHHHHhCc
Confidence              2234566777666643

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.1e-36  Score=251.55  Aligned_cols=227  Identities=25%  Similarity=0.270  Sum_probs=132.0

Q ss_pred             ccchhhhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHH----------------
Q 026440            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILL----------------   65 (238)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll----------------   65 (238)
                      |++..+..+.++||.|+..|+.++|+.|++.+  .+++..+..|.||||+|+..|+.+++++|+                
T Consensus       170 dvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~G--ad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~a  247 (682)
T PHA02876        170 DVNAKDIYCITPIHYAAERGNAKMVNLLLSYG--ADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKA  247 (682)
T ss_pred             CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC--CCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHH
Confidence            45556677888888888888888888888775  234444444555555555555544444443                


Q ss_pred             -----------------------------------------------hhcccccccccccCCCCcHHHHHHHcC-CHHHH
Q 026440           66 -----------------------------------------------SVDESANVVNAVDEEGWAPIHSAASIG-NVTIV   97 (238)
Q Consensus        66 -----------------------------------------------~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~   97 (238)
                                                                     +.|.+   ++..+..|.||||+|+..| +.+++
T Consensus       248 i~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gad---in~~d~~g~TpLh~Aa~~g~~~~~v  324 (682)
T PHA02876        248 IRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGAD---VNAKNIKGETPLYLMAKNGYDTENI  324 (682)
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHhCCCHHHH
Confidence                                                           33332   2333344444444444444 24444


Q ss_pred             HHHHHcCCCCcccCCCCchHHHHHHHc-CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCcc
Q 026440           98 EMLLSKGADVNLKNDGGRTALHYAASK-GWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDAT  176 (238)
Q Consensus        98 ~~Ll~~~~~~~~~~~~~~~~l~~a~~~-~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~  176 (238)
                      +.|+..|++++..+..|.||||+|+.. +..++++.|++.|++++..|..|.||||+|+..++.+++++|+++|++++..
T Consensus       325 ~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~  404 (682)
T PHA02876        325 RTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEAL  404 (682)
T ss_pred             HHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcccc
Confidence            444444444444444444455544443 2455555555556666666666666666666666666666666666666666


Q ss_pred             ccCCCcHHHHHHHhCC-HHHHHHHHhcCCCCccCCCCCCchhhcccccc-chHHHHHHH
Q 026440          177 DKAGQTPLMNAVICYN-KEVALLLIRHGADVDVEDKEGYTVLGRASNDF-RPILIDAAK  233 (238)
Q Consensus       177 ~~~~~t~l~~a~~~~~-~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~-~~~~~~~~~  233 (238)
                      +..|.||||+|+..++ .+++++|+++|++++.+|..|+||||+|+..+ +.+++++|.
T Consensus       405 ~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl  463 (682)
T PHA02876        405 SQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLL  463 (682)
T ss_pred             CCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHH
Confidence            6666666666654443 34566666677777777777777777777654 455555543

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.3e-36  Score=241.31  Aligned_cols=219  Identities=22%  Similarity=0.251  Sum_probs=170.4

Q ss_pred             ccChHHHHHHHc--CChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcC------CHHHHHHHHhhcccccccccccCC
Q 026440            9 IKDKDLFKAAET--GDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG------HPEVVEILLSVDESANVVNAVDEE   80 (238)
Q Consensus         9 ~~~~~l~~a~~~--g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~------~~~~~~~Ll~~~~~~~~~~~~~~~   80 (238)
                      .+.++++.++..  ++.++|+.|++.|  .+++.++ .+.||||.|+..+      +.+++++|++.|++   ++..+..
T Consensus        34 ~g~t~l~~~~~~~~~~~~iv~~Ll~~G--Advn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gad---in~~d~~  107 (494)
T PHA02989         34 RGNSILLLYLKRKDVKIKIVKLLIDNG--ADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGAD---INLKTFN  107 (494)
T ss_pred             CCCCHHHHHHhcCCCChHHHHHHHHcC--CCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCC---CCCCCCC
Confidence            355666554443  3678888888876  4555544 4678888877643      46788888887777   6666778


Q ss_pred             CCcHHHHHHHc---CCHHHHHHHHHcCCCC-cccCCCCchHHHHHHHc--CCHHHHHHHHHcCCCCCC-CCCCCCcHHHH
Q 026440           81 GWAPIHSAASI---GNVTIVEMLLSKGADV-NLKNDGGRTALHYAASK--GWLKIVELLISRGAKINS-KDKVGCTALHR  153 (238)
Q Consensus        81 ~~t~l~~a~~~---~~~~~~~~Ll~~~~~~-~~~~~~~~~~l~~a~~~--~~~~~~~~l~~~~~~~~~-~~~~~~t~l~~  153 (238)
                      |.|||+.|+..   ++.+++++|+++|+++ +..+..|.||||+|+..  ++.+++++|+++|++++. .+..|.||+|.
T Consensus       108 g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~  187 (494)
T PHA02989        108 GVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNI  187 (494)
T ss_pred             CCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHH
Confidence            88888877654   5678888888888888 67777888888887654  477888888888888877 56678888887


Q ss_pred             HHhhC----CHHHHHHHHhcCCCCC--------------------------------------ccccCCCcHHHHHHHhC
Q 026440          154 GASTG----NSALCELLIEEGAEVD--------------------------------------ATDKAGQTPLMNAVICY  191 (238)
Q Consensus       154 a~~~~----~~~~~~~Ll~~~~~~~--------------------------------------~~~~~~~t~l~~a~~~~  191 (238)
                      |+..+    +.+++++|+++|++++                                      .+|..|.||||+|+..+
T Consensus       188 a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~  267 (494)
T PHA02989        188 YLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVD  267 (494)
T ss_pred             HHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhc
Confidence            76654    6788888887776654                                      44556999999999999


Q ss_pred             CHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHH
Q 026440          192 NKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAK  233 (238)
Q Consensus       192 ~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~  233 (238)
                      +.+++++|+++|++++.+|..|.|||++|+..++.++++++-
T Consensus       268 ~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL  309 (494)
T PHA02989        268 NYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRIL  309 (494)
T ss_pred             CHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999999999999988887654

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=7.8e-36  Score=241.47  Aligned_cols=210  Identities=21%  Similarity=0.345  Sum_probs=174.4

Q ss_pred             HHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHc-----CCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcC
Q 026440           18 AETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASC-----GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIG   92 (238)
Q Consensus        18 ~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~-----~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~   92 (238)
                      ...++.++|+.|++.|  .+++..+..|.||||.|+..     ++.+++++|++.|++   ++..+..|.||||+|+..+
T Consensus        46 ~~~~~~~iv~~Ll~~G--advn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gad---iN~~d~~G~TpLh~a~~~~  120 (489)
T PHA02798         46 RDSPSTDIVKLFINLG--ANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGAD---INKKNSDGETPLYCLLSNG  120 (489)
T ss_pred             CCCCCHHHHHHHHHCC--CCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCC---CCCCCCCcCcHHHHHHHcC
Confidence            3345788888888887  47788888888898888764     567888888888877   6777788889998888775


Q ss_pred             ---CHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCC---HHHHHHHHHcCCCCCCCC-CCCCcHHHHHHhh----CCHH
Q 026440           93 ---NVTIVEMLLSKGADVNLKNDGGRTALHYAASKGW---LKIVELLISRGAKINSKD-KVGCTALHRGAST----GNSA  161 (238)
Q Consensus        93 ---~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~l~~~~~~~~~~~-~~~~t~l~~a~~~----~~~~  161 (238)
                         +.+++++|+++|++++..+..|.||||+|+..++   .+++++|+++|++++..+ ..+.||+|.++..    ++.+
T Consensus       121 ~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~  200 (489)
T PHA02798        121 YINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDAD  200 (489)
T ss_pred             CcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHH
Confidence               6788888888888888888888899988888877   888888888888888764 4577888877654    3677


Q ss_pred             HHHHHHhcCC---------------------------------------CCCccccCCCcHHHHHHHhCCHHHHHHHHhc
Q 026440          162 LCELLIEEGA---------------------------------------EVDATDKAGQTPLMNAVICYNKEVALLLIRH  202 (238)
Q Consensus       162 ~~~~Ll~~~~---------------------------------------~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  202 (238)
                      ++++|+++|+                                       +++.+|..|.||||+|+..++.+++++|+++
T Consensus       201 ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~  280 (489)
T PHA02798        201 ILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQL  280 (489)
T ss_pred             HHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHc
Confidence            7777777665                                       4455677899999999999999999999999


Q ss_pred             CCCCccCCCCCCchhhccccccchHHHHHH
Q 026440          203 GADVDVEDKEGYTVLGRASNDFRPILIDAA  232 (238)
Q Consensus       203 ~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~  232 (238)
                      |++++.+|..|.|||++|+.+++.++++.+
T Consensus       281 GAdin~~d~~G~TpL~~A~~~~~~~iv~~l  310 (489)
T PHA02798        281 GGDINIITELGNTCLFTAFENESKFIFNSI  310 (489)
T ss_pred             CCcccccCCCCCcHHHHHHHcCcHHHHHHH
Confidence            999999999999999999999998877765

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.8e-35  Score=235.59  Aligned_cols=215  Identities=31%  Similarity=0.391  Sum_probs=182.6

Q ss_pred             HHHHHHHcCChHHHHHHHHHHhhh--hcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHH
Q 026440           13 DLFKAAETGDSSTFKSLSKQQLLK--SLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS   90 (238)
Q Consensus        13 ~l~~a~~~g~~~~v~~l~~~~~~~--~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~   90 (238)
                      .|+.++...+.+.+...++.....  ..+.....+.||||+|+..|+.+++++|++.|.+   ++..+..|.||||+|+.
T Consensus         3 ~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gad---vn~~d~~g~TpLh~A~~   79 (477)
T PHA02878          3 KLYKSMYTDNYETILKYIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHN---VNQPDHRDLTPLHIICK   79 (477)
T ss_pred             hHHHHHHhccHHHHHHHHHHHhhhhhhcCcccccCcchHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHH
Confidence            578888888887777777663211  1233344678999999999999999999998877   67788999999999997


Q ss_pred             cCCHH----------------------------------------------------------------HHHHHHHcCCC
Q 026440           91 IGNVT----------------------------------------------------------------IVEMLLSKGAD  106 (238)
Q Consensus        91 ~~~~~----------------------------------------------------------------~~~~Ll~~~~~  106 (238)
                      .|+.+                                                                ++++|+++|++
T Consensus        80 ~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gad  159 (477)
T PHA02878         80 EPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGAD  159 (477)
T ss_pred             CccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCC
Confidence            65432                                                                66677777888


Q ss_pred             CcccCCC-CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHH
Q 026440          107 VNLKNDG-GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLM  185 (238)
Q Consensus       107 ~~~~~~~-~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~  185 (238)
                      ++..+.. |.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..++.+++++|++.|++++.++..|.||||
T Consensus       160 in~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh  239 (477)
T PHA02878        160 INMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLH  239 (477)
T ss_pred             CCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            8888877 999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHh-CCHHHHHHHHhcCCCCccCCC-CCCchhhccccccchHHHHHH
Q 026440          186 NAVIC-YNKEVALLLIRHGADVDVEDK-EGYTVLGRASNDFRPILIDAA  232 (238)
Q Consensus       186 ~a~~~-~~~~~~~~Ll~~~~~~~~~~~-~g~tpl~~a~~~~~~~~~~~~  232 (238)
                      +|+.. ++.+++++|+++|++++.++. .|.||||+|.  ++.+++++|
T Consensus       240 ~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A~--~~~~~v~~L  286 (477)
T PHA02878        240 ISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSI--KSERKLKLL  286 (477)
T ss_pred             HHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHHc--cCHHHHHHH
Confidence            99975 689999999999999999886 7999999994  455555444

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.4e-35  Score=245.94  Aligned_cols=216  Identities=28%  Similarity=0.322  Sum_probs=195.8

Q ss_pred             chhhhccChHHHHHHHcCCh-HHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcC-CHHHHHHHHhhcccccccccccCCC
Q 026440            4 DIDQTIKDKDLFKAAETGDS-STFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG-HPEVVEILLSVDESANVVNAVDEEG   81 (238)
Q Consensus         4 ~~~~~~~~~~l~~a~~~g~~-~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~-~~~~~~~Ll~~~~~~~~~~~~~~~~   81 (238)
                      +..+..+.++||+|+..|+. ++++.|++.+  .+++..+..|.||||+|+..| +.++++.|+..|.+   ++..+..|
T Consensus       267 n~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~g--adin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gad---in~~d~~g  341 (682)
T PHA02876        267 NSIDDCKNTPLHHASQAPSLSRLVPKLLERG--ADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGAD---VNAADRLY  341 (682)
T ss_pred             CCCCCCCCCHHHHHHhCCCHHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCC---CCCcccCC
Confidence            34456688999999999997 4777777766  577888999999999999999 59999999998887   66778899


Q ss_pred             CcHHHHHHHc-CCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCC-
Q 026440           82 WAPIHSAASI-GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN-  159 (238)
Q Consensus        82 ~t~l~~a~~~-~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~-  159 (238)
                      .||||+|+.. ++.++++.|++.|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++ 
T Consensus       342 ~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~  421 (682)
T PHA02876        342 ITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNP  421 (682)
T ss_pred             CcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCH
Confidence            9999999986 57899999999999999999999999999999999999999999999999999999999999998766 


Q ss_pred             HHHHHHHHhcCCCCCccccCCCcHHHHHHHhC-CHHHHHHHHhcCCCCccCCCCCCchhhcccccc
Q 026440          160 SALCELLIEEGAEVDATDKAGQTPLMNAVICY-NKEVALLLIRHGADVDVEDKEGYTVLGRASNDF  224 (238)
Q Consensus       160 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~  224 (238)
                      ..++++|+++|++++.++..|+||||+|+..+ +.+++++|+++|++++.+|..|.||+++|..++
T Consensus       422 ~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~~  487 (682)
T PHA02876        422 YMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEYH  487 (682)
T ss_pred             HHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhC
Confidence            56789999999999999999999999999876 689999999999999999999999999998654

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=2e-34  Score=229.76  Aligned_cols=231  Identities=28%  Similarity=0.324  Sum_probs=182.3

Q ss_pred             ccchhhhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcc--cccccccccC
Q 026440            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDE--SANVVNAVDE   79 (238)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~--~~~~~~~~~~   79 (238)
                      |++..+.-+.++||.|+..|+.|..+.|++.+  .++...+..|+.|+|.|+.+|..++.+.++....  ...-++..+.
T Consensus       146 dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~--a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n  223 (929)
T KOG0510|consen  146 DVNLEDENGFTPLHLAARKNKVEAKKELINKG--ADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNN  223 (929)
T ss_pred             CccccccCCCchhhHHHhcChHHHHHHHHhcC--CCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccC
Confidence            55666666667777777777777556666555  3555556667777777777777777777775111  1122566677


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC---------------cccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q 026440           80 EGWAPIHSAASIGNVTIVEMLLSKGADV---------------NLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD  144 (238)
Q Consensus        80 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~---------------~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~  144 (238)
                      .+.+|||.|+..|+.++++.++++|...               +..|.+|.||||+|++.|++++++.|+..|++++.++
T Consensus       224 ~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn  303 (929)
T KOG0510|consen  224 EKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKN  303 (929)
T ss_pred             CCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccC
Confidence            8899999999999999999999876432               3346789999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHhhCCHHHHHHHHh-cC-CCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCc---cCCCCCCchhhc
Q 026440          145 KVGCTALHRGASTGNSALCELLIE-EG-AEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD---VEDKEGYTVLGR  219 (238)
Q Consensus       145 ~~~~t~l~~a~~~~~~~~~~~Ll~-~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~---~~~~~g~tpl~~  219 (238)
                      .++.||||.|+.+|+.++++-|++ .+ ...+..|..|.||||.|+++|+..+++.|++.|+...   ..|.+|+||||.
T Consensus       304 ~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~  383 (929)
T KOG0510|consen  304 KDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHL  383 (929)
T ss_pred             CCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhH
Confidence            999999999999999999999998 33 3456678889999999999999999999999998877   458899999999


Q ss_pred             cccccchHHHHHHHH
Q 026440          220 ASNDFRPILIDAAKA  234 (238)
Q Consensus       220 a~~~~~~~~~~~~~~  234 (238)
                      |+..|++..++++..
T Consensus       384 Aa~~g~~~av~~Li~  398 (929)
T KOG0510|consen  384 AAKYGNTSAVQKLIS  398 (929)
T ss_pred             HHHhccHHHHHHHHH
Confidence            999999888877653

>PHA02859 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.7e-34  Score=204.14  Aligned_cols=177  Identities=25%  Similarity=0.274  Sum_probs=159.0

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCcccC-CCCchHH
Q 026440           42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIG--NVTIVEMLLSKGADVNLKN-DGGRTAL  118 (238)
Q Consensus        42 ~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~-~~~~~~l  118 (238)
                      .+.+++|||.|+..|+.+.++.|+..      .+..+..|.||||+|+..+  +.+++++|+++|++++.++ ..|.|||
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~------~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpL   91 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF------VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSAL   91 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh------hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHH
Confidence            45678999999999999999999864      3456788999999999854  8999999999999999886 4799999


Q ss_pred             HHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHh--hCCHHHHHHHHhcCCCCCccccCCCcHHHH-HHHhCC
Q 026440          119 HYAASK---GWLKIVELLISRGAKINSKDKVGCTALHRGAS--TGNSALCELLIEEGAEVDATDKAGQTPLMN-AVICYN  192 (238)
Q Consensus       119 ~~a~~~---~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~--~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~-a~~~~~  192 (238)
                      |+|+..   ++.+++++|+++|++++..+..|.||||.|+.  .++.+++++|+++|++++.++..|.||||. |+..++
T Consensus        92 h~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~  171 (209)
T PHA02859         92 HHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSD  171 (209)
T ss_pred             HHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCC
Confidence            998764   47999999999999999999999999999876  467999999999999999999999999995 567789


Q ss_pred             HHHHHHHHhcCCCCccCCCCCCchhhcccccc
Q 026440          193 KEVALLLIRHGADVDVEDKEGYTVLGRASNDF  224 (238)
Q Consensus       193 ~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~  224 (238)
                      .+++++|+++|++++.+|..|.||+++|..++
T Consensus       172 ~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        172 KKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            99999999999999999999999999998764

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=2.9e-34  Score=216.51  Aligned_cols=219  Identities=29%  Similarity=0.405  Sum_probs=192.3

Q ss_pred             HHHHHHcCChHHHHHHHHHHh---hhhcCCCCCCCchHHHHHHHcCCHHHHHHHHh-hccccccc-----ccccCCCCcH
Q 026440           14 LFKAAETGDSSTFKSLSKQQL---LKSLSLRNDDDRTLLHVAASCGHPEVVEILLS-VDESANVV-----NAVDEEGWAP   84 (238)
Q Consensus        14 l~~a~~~g~~~~v~~l~~~~~---~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~-~~~~~~~~-----~~~~~~~~t~   84 (238)
                      ...|++.|..-.++.|+....   -...-....+|.|||-+|+++||.+++++|++ .++++...     +--...|-+|
T Consensus         8 ~~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~Iegapp   87 (615)
T KOG0508|consen    8 VINAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPP   87 (615)
T ss_pred             HHHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCch
Confidence            447889999988888876532   12333456778899999999999999999998 34443321     1123468899


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHH
Q 026440           85 IHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCE  164 (238)
Q Consensus        85 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  164 (238)
                      |..|+..|+.++++.|+++|+.+|.......|||..||.-|+.+++++|+++|++++..|..|.|.|++|+.+|+.++++
T Consensus        88 LWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~q  167 (615)
T KOG0508|consen   88 LWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQ  167 (615)
T ss_pred             hhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHH
Confidence            99999999999999999999999988888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHH
Q 026440          165 LLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAK  233 (238)
Q Consensus       165 ~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~  233 (238)
                      +|++.|+|++.++..|+|+||.|+++|+.+++++|+.+|+.+.+-. .|.|||..|...|+..+++.+.
T Consensus       168 yLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~-~GmtPL~~Aa~tG~~~iVe~L~  235 (615)
T KOG0508|consen  168 YLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDG-HGMTPLLLAAVTGHTDIVERLL  235 (615)
T ss_pred             HHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeeecC-CCCchHHHHhhhcchHHHHHHh
Confidence            9999999999999999999999999999999999999999877644 4999999999999999998875

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.3e-33  Score=225.21  Aligned_cols=225  Identities=26%  Similarity=0.360  Sum_probs=170.9

Q ss_pred             chhhhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCc
Q 026440            4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWA   83 (238)
Q Consensus         4 ~~~~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t   83 (238)
                      +..+..+..++|.|+..|+++.++.|++.+  .+++..++.+.||||.||..++.|..+.|++.+++   ....+.+|..
T Consensus       115 ~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~--~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~---~~K~~~~~~~  189 (929)
T KOG0510|consen  115 PLRNLNKNAPLHLAADSGNYSCLKLLLDYG--ADVNLEDENGFTPLHLAARKNKVEAKKELINKGAD---PCKSDIDGNF  189 (929)
T ss_pred             ChhhhhccCchhhccccchHHHHHHHHHhc--CCccccccCCCchhhHHHhcChHHHHHHHHhcCCC---CCcccCcCCc
Confidence            344555666777777777777777777776  56777777788888888888888866777777766   4555677778


Q ss_pred             HHHHHHHcCCHHHHHHHHH-----cCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCC---------------CCCC
Q 026440           84 PIHSAASIGNVTIVEMLLS-----KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK---------------INSK  143 (238)
Q Consensus        84 ~l~~a~~~~~~~~~~~Ll~-----~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~---------------~~~~  143 (238)
                      |+|.|+.+|..++++..+.     .+..++..+..+.+|||.|...|++++++.+++.|..               ++..
T Consensus       190 ~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~  269 (929)
T KOG0510|consen  190 PIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDE  269 (929)
T ss_pred             hHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcc
Confidence            8888888888888887777     4556666677778888888888888888888877544               2335


Q ss_pred             CCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHh-cC-CCCccCCCCCCchhhccc
Q 026440          144 DKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIR-HG-ADVDVEDKEGYTVLGRAS  221 (238)
Q Consensus       144 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~-~~-~~~~~~~~~g~tpl~~a~  221 (238)
                      |..|.||||+|++.|++++++.|+..|++++.++.++.||||.|+.+|+.+.++-|++ .| ...+..|-.|.||+|+|+
T Consensus       270 d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa  349 (929)
T KOG0510|consen  270 DNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAA  349 (929)
T ss_pred             cccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhh
Confidence            6778888888888888888888888888888888888888888888888888888887 33 445666777888888888


Q ss_pred             cccchHHHHHHH
Q 026440          222 NDFRPILIDAAK  233 (238)
Q Consensus       222 ~~~~~~~~~~~~  233 (238)
                      ++||..+++.+.
T Consensus       350 ~~gH~~v~qlLl  361 (929)
T KOG0510|consen  350 KSGHDRVVQLLL  361 (929)
T ss_pred             hcCHHHHHHHHH
Confidence            888877777653

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.5e-32  Score=222.58  Aligned_cols=210  Identities=20%  Similarity=0.228  Sum_probs=177.0

Q ss_pred             HHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHc--CCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcC---
Q 026440           18 AETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASC--GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIG---   92 (238)
Q Consensus        18 ~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~--~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~---   92 (238)
                      ....+.++|+.|++.|  .+++.. ..|.||||.++..  ++.+++++|++.|++   ++..+ .+.|||+.|+..+   
T Consensus        11 ~~~~~~~~v~~LL~~G--advN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAd---vn~~~-~~~tpL~~a~~~~~~~   83 (494)
T PHA02989         11 SDTVDKNALEFLLRTG--FDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGAD---VNYKG-YIETPLCAVLRNREIT   83 (494)
T ss_pred             CCcCcHHHHHHHHHcC--CCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCC---ccCCC-CCCCcHHHHHhccCcc
Confidence            4468999999999988  467766 5688988766554  378999999999988   44444 5689999998654   


Q ss_pred             ---CHHHHHHHHHcCCCCcccCCCCchHHHHHHHc---CCHHHHHHHHHcCCCC-CCCCCCCCcHHHHHHhh--CCHHHH
Q 026440           93 ---NVTIVEMLLSKGADVNLKNDGGRTALHYAASK---GWLKIVELLISRGAKI-NSKDKVGCTALHRGAST--GNSALC  163 (238)
Q Consensus        93 ---~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~---~~~~~~~~l~~~~~~~-~~~~~~~~t~l~~a~~~--~~~~~~  163 (238)
                         +.+++++|+++|++++.++..|.|||+.|+..   ++.+++++|+++|+++ +..+..|.||||+|+..  ++.+++
T Consensus        84 ~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv  163 (494)
T PHA02989         84 SNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVI  163 (494)
T ss_pred             hhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHH
Confidence               46899999999999999999999999988765   6799999999999999 78999999999998764  578999


Q ss_pred             HHHHhcCCCCCc-cccCCCcHHHHHHHhC----CHHHHHHHHhcCCCCcc------------------------------
Q 026440          164 ELLIEEGAEVDA-TDKAGQTPLMNAVICY----NKEVALLLIRHGADVDV------------------------------  208 (238)
Q Consensus       164 ~~Ll~~~~~~~~-~~~~~~t~l~~a~~~~----~~~~~~~Ll~~~~~~~~------------------------------  208 (238)
                      ++|+++|++++. .+..|.||||+|+..+    +.+++++|+++|++++.                              
T Consensus       164 ~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l  243 (494)
T PHA02989        164 KILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFI  243 (494)
T ss_pred             HHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHH
Confidence            999999999988 6788999999998754    89999999999887654                              


Q ss_pred             --------CCCCCCchhhccccccchHHHHHHHH
Q 026440          209 --------EDKEGYTVLGRASNDFRPILIDAAKA  234 (238)
Q Consensus       209 --------~~~~g~tpl~~a~~~~~~~~~~~~~~  234 (238)
                              +|..|+||||+|+..++.+++++|..
T Consensus       244 ~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~  277 (494)
T PHA02989        244 LKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLK  277 (494)
T ss_pred             HhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHH
Confidence                    34569999999999999877776643

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.8e-32  Score=224.82  Aligned_cols=197  Identities=20%  Similarity=0.187  Sum_probs=110.1

Q ss_pred             hHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHc---CCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCH----H
Q 026440           23 SSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASC---GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNV----T   95 (238)
Q Consensus        23 ~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~----~   95 (238)
                      ++.|+.|+.++  ...+.+|..|.||||+|+..   |+.+++++|++.|.+   ++..+..|+||||+|+..|+.    +
T Consensus        12 ~~~~~~l~~~~--~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~---v~~~~~~g~TpL~~Aa~~g~~~v~~~   86 (661)
T PHA02917         12 LDELKQMLRDR--DPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTN---PLHKNWRQLTPLEEYTNSRHVKVNKD   86 (661)
T ss_pred             HHHHHHHHhcc--CcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCC---ccccCCCCCCHHHHHHHcCChhHHHH
Confidence            34555665543  23344466666666665443   556666666665555   344555666666666666653    3


Q ss_pred             HHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH--hhCCHHHHHHHHhcCCCC
Q 026440           96 IVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGA--STGNSALCELLIEEGAEV  173 (238)
Q Consensus        96 ~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~--~~~~~~~~~~Ll~~~~~~  173 (238)
                      +++.|++.+...+..+  ..++++.|+..++.+++++|+++|++++..|..|.|||+.++  ..++.+++++|+++|+++
T Consensus        87 ~~~~Ll~~~~~~n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~v  164 (661)
T PHA02917         87 IAMALLEATGYSNIND--FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSV  164 (661)
T ss_pred             HHHHHHhccCCCCCCC--cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCc
Confidence            3455555432222222  124445555566666666666666666666666666666432  345666666666666666


Q ss_pred             Ccccc---CC-----------CcHHHHHHH-----------hCCHHHHHHHHhcCCCCccCCCCCCchhhccccccch
Q 026440          174 DATDK---AG-----------QTPLMNAVI-----------CYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRP  226 (238)
Q Consensus       174 ~~~~~---~~-----------~t~l~~a~~-----------~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~  226 (238)
                      +..+.   .|           .||||+|+.           .++.+++++|+++|++++.+|.+|.||||+|+..++.
T Consensus       165 n~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~  242 (661)
T PHA02917        165 LYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHI  242 (661)
T ss_pred             cccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCC
Confidence            54332   12           366666654           2355666666666666666666666666666666654

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.9e-32  Score=219.39  Aligned_cols=207  Identities=23%  Similarity=0.308  Sum_probs=174.4

Q ss_pred             CChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHH--cCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHc-----CC
Q 026440           21 GDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAAS--CGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASI-----GN   93 (238)
Q Consensus        21 g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~--~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~-----~~   93 (238)
                      =+++.|+.|++.+   +.+.. ..+.|+++.+..  .++.+++++|+++|.+   ++..+..|.|||+.|+..     +.
T Consensus        16 ~~~~~v~~ll~~~---~~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gad---vn~~d~~g~TpL~~~~~n~~~~~~~   88 (489)
T PHA02798         16 VKLSTVKLLIKSC---NPNEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGAN---VNGLDNEYSTPLCTILSNIKDYKHM   88 (489)
T ss_pred             ccHHHHHHHHhcC---Chhhh-cccchHHHHHHhCCCCCHHHHHHHHHCCCC---CCCCCCCCCChHHHHHHhHHhHHhH
Confidence            3577999999765   22222 346677664443  4578999999999988   677789999999998864     56


Q ss_pred             HHHHHHHHHcCCCCcccCCCCchHHHHHHHcC---CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCC---HHHHHHHH
Q 026440           94 VTIVEMLLSKGADVNLKNDGGRTALHYAASKG---WLKIVELLISRGAKINSKDKVGCTALHRGASTGN---SALCELLI  167 (238)
Q Consensus        94 ~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~---~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~---~~~~~~Ll  167 (238)
                      .+++++|+++|++++.++..|.||||+|+..+   +.+++++|+++|++++..+..|.||||+|+..++   .+++++|+
T Consensus        89 ~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll  168 (489)
T PHA02798         89 LDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLL  168 (489)
T ss_pred             HHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHH
Confidence            89999999999999999999999999999875   7899999999999999999999999999999988   99999999


Q ss_pred             hcCCCCCccc-cCCCcHHHHHHHh----CCHHHHHHHHhcCCCC------------------------------------
Q 026440          168 EEGAEVDATD-KAGQTPLMNAVIC----YNKEVALLLIRHGADV------------------------------------  206 (238)
Q Consensus       168 ~~~~~~~~~~-~~~~t~l~~a~~~----~~~~~~~~Ll~~~~~~------------------------------------  206 (238)
                      ++|++++..+ ..|.||+|.++..    ++.+++++|+++|+++                                    
T Consensus       169 ~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~  248 (489)
T PHA02798        169 EKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSY  248 (489)
T ss_pred             HhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhc
Confidence            9999999875 5689999988764    3788999998887654                                    


Q ss_pred             ---ccCCCCCCchhhccccccchHHHHHHHH
Q 026440          207 ---DVEDKEGYTVLGRASNDFRPILIDAAKA  234 (238)
Q Consensus       207 ---~~~~~~g~tpl~~a~~~~~~~~~~~~~~  234 (238)
                         +.+|..|+||||+|+..++.+++++|..
T Consensus       249 ~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~  279 (489)
T PHA02798        249 IDINQVDELGFNPLYYSVSHNNRKIFEYLLQ  279 (489)
T ss_pred             CCCCCcCcCCccHHHHHHHcCcHHHHHHHHH
Confidence               4466789999999999999887777643

>PHA02859 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.7e-31  Score=192.54  Aligned_cols=177  Identities=19%  Similarity=0.220  Sum_probs=157.1

Q ss_pred             hhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcC--CHHHHHHHHhhccccccccccc-CCCCc
Q 026440            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG--HPEVVEILLSVDESANVVNAVD-EEGWA   83 (238)
Q Consensus         7 ~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~--~~~~~~~Ll~~~~~~~~~~~~~-~~~~t   83 (238)
                      .....++|+.|+..|+.+.|+.|++.     .+..+..|.||||+|+..+  +.+++++|++.|.+   ++..+ ..|+|
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~-----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gad---vn~~~~~~g~T   89 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF-----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGAD---VNFKTRDNNLS   89 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh-----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCC---CCccCCCCCCC
Confidence            45567899999999999999999864     3456888999999999854  89999999999887   55555 58999


Q ss_pred             HHHHHHHc---CCHHHHHHHHHcCCCCcccCCCCchHHHHHHHc--CCHHHHHHHHHcCCCCCCCCCCCCcHHHH-HHhh
Q 026440           84 PIHSAASI---GNVTIVEMLLSKGADVNLKNDGGRTALHYAASK--GWLKIVELLISRGAKINSKDKVGCTALHR-GAST  157 (238)
Q Consensus        84 ~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~--~~~~~~~~l~~~~~~~~~~~~~~~t~l~~-a~~~  157 (238)
                      |||+|+..   ++.+++++|+++|++++.++..|.||||.|+..  ++.+++++|++.|++++..|..|.||+|. +...
T Consensus        90 pLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~  169 (209)
T PHA02859         90 ALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFH  169 (209)
T ss_pred             HHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhc
Confidence            99998764   479999999999999999999999999998764  68999999999999999999999999996 5667


Q ss_pred             CCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhC
Q 026440          158 GNSALCELLIEEGAEVDATDKAGQTPLMNAVICY  191 (238)
Q Consensus       158 ~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~  191 (238)
                      ++.+++++|+++|++++.++..|.||+++|...+
T Consensus       170 ~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        170 SDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            8999999999999999999999999999998754

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.3e-31  Score=219.40  Aligned_cols=225  Identities=20%  Similarity=0.183  Sum_probs=180.0

Q ss_pred             hhhhccChHHHHHHHc---CChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHH----HHHHHHhhcccccccccc
Q 026440            5 IDQTIKDKDLFKAAET---GDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPE----VVEILLSVDESANVVNAV   77 (238)
Q Consensus         5 ~~~~~~~~~l~~a~~~---g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~----~~~~Ll~~~~~~~~~~~~   77 (238)
                      ..+..+.++||+|+..   |+.++|+.|++.+  .+++..+..|+||||.|+..|+.+    +++.|++.+...   +..
T Consensus        27 ~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~g--a~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~---n~~  101 (661)
T PHA02917         27 TRNQFKNNALHAYLFNEHCNNVEVVKLLLDSG--TNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYS---NIN  101 (661)
T ss_pred             ccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCC--CCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCC---CCC
Confidence            3466788999997555   8899999999887  567788999999999999999954    556777643321   221


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHH--HcCCHHHHHHHHHcCCCCCCCCC---CC-----
Q 026440           78 DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAA--SKGWLKIVELLISRGAKINSKDK---VG-----  147 (238)
Q Consensus        78 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~--~~~~~~~~~~l~~~~~~~~~~~~---~~-----  147 (238)
                      +  ..+++++|+..++.+++++|+++|++++..+..|.|||+.++  ..|+.+++++|+++|++++..+.   .|     
T Consensus       102 ~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~  179 (661)
T PHA02917        102 D--FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDD  179 (661)
T ss_pred             C--cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccc
Confidence            2  236778899999999999999999999999999999999654  46899999999999999975543   23     


Q ss_pred             ------CcHHHHHHh-----------hCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCH--HHHHHHHhcCCCCc-
Q 026440          148 ------CTALHRGAS-----------TGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNK--EVALLLIRHGADVD-  207 (238)
Q Consensus       148 ------~t~l~~a~~-----------~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~--~~~~~Ll~~~~~~~-  207 (238)
                            .||||+|+.           .++.+++++|++.|++++.++.+|.||||+|+..++.  +++++|++ |++.+ 
T Consensus       180 ~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~  258 (661)
T PHA02917        180 YQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTA  258 (661)
T ss_pred             ccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccc
Confidence                  599999986           4688999999999999999999999999999999985  79999975 88765 


Q ss_pred             ---cCCCCCCchhhccccccc------hHHHHHHHHHhc
Q 026440          208 ---VEDKEGYTVLGRASNDFR------PILIDAAKAMLE  237 (238)
Q Consensus       208 ---~~~~~g~tpl~~a~~~~~------~~~~~~~~~~~~  237 (238)
                         ..|..|.+|+++|.+.++      ....+.++.|++
T Consensus       259 ~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~  297 (661)
T PHA02917        259 YSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLE  297 (661)
T ss_pred             cccccCcccccchHHHHHHHhhccccccchHHHHHHHHh
Confidence               456678888888884321      123455555554

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=2.5e-32  Score=213.21  Aligned_cols=183  Identities=34%  Similarity=0.422  Sum_probs=171.6

Q ss_pred             chHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCchHHHHHHHc
Q 026440           46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYAASK  124 (238)
Q Consensus        46 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~l~~a~~~  124 (238)
                      ...++.|++.|..+.++.+++..  ...++..|..|.++||+|+-+++.+++++|+++|+++|..+ ..+.||||+|+++
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~--g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~  122 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESE--GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARN  122 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhc--CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHc
Confidence            45689999999999999999872  33378888999999999999999999999999999999987 5789999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCC
Q 026440          125 GWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGA  204 (238)
Q Consensus       125 ~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~  204 (238)
                      |+..++++|+++|++++..|.+|.+|+|.|++.++.-.+-||+.++++++.+|.+|+||||+|+..|....+..|+..|+
T Consensus       123 G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a  202 (600)
T KOG0509|consen  123 GHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGA  202 (600)
T ss_pred             CcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988999999999


Q ss_pred             CCccCC-CCCCchhhccccccchHHHH
Q 026440          205 DVDVED-KEGYTVLGRASNDFRPILID  230 (238)
Q Consensus       205 ~~~~~~-~~g~tpl~~a~~~~~~~~~~  230 (238)
                      ++..+| ..|+||||+|+..++...+.
T Consensus       203 ~~~~~d~~~g~TpLHwa~~~gN~~~v~  229 (600)
T KOG0509|consen  203 SLLLTDDNHGNTPLHWAVVGGNLTAVK  229 (600)
T ss_pred             cccccccccCCchHHHHHhcCCcceEe
Confidence            999998 89999999999999966555

>PHA02795 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.6e-30  Score=201.14  Aligned_cols=173  Identities=17%  Similarity=0.153  Sum_probs=136.4

Q ss_pred             HHHHcCCHHHHHHHHhhcccccccc---cccCCCCcHHHHHHH--cCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcC
Q 026440           51 VAASCGHPEVVEILLSVDESANVVN---AVDEEGWAPIHSAAS--IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKG  125 (238)
Q Consensus        51 ~A~~~~~~~~~~~Ll~~~~~~~~~~---~~~~~~~t~l~~a~~--~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~  125 (238)
                      +|+..+..|++++|+.+|.+.+...   ..+..++|+||.++.  .++.+++++|+++|++++..  .+.||+|.|+..+
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~  160 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKK  160 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcC
Confidence            7888888888888888887744111   455668888888888  77888888888888888764  3467888888888


Q ss_pred             CHHHHHHHHHcCCCCCCCC------CCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHH
Q 026440          126 WLKIVELLISRGAKINSKD------KVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL  199 (238)
Q Consensus       126 ~~~~~~~l~~~~~~~~~~~------~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  199 (238)
                      +.+++++|+++|++.....      ..+.+++|.|...+..+++++|+++|++++.++..|.||||+|+..|+.+++++|
T Consensus       161 ~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelL  240 (437)
T PHA02795        161 ESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWL  240 (437)
T ss_pred             cHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            8888888888887432221      2366778888888888888888888888888888888888888888888888888


Q ss_pred             HhcCCCCccCCCCCCchhhccccccc
Q 026440          200 IRHGADVDVEDKEGYTVLGRASNDFR  225 (238)
Q Consensus       200 l~~~~~~~~~~~~g~tpl~~a~~~~~  225 (238)
                      +++|++++.+|..|.||||+|+..++
T Consensus       241 L~~GAdIN~~d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        241 LENGANVNAVMSNGYTCLDVAVDRGS  266 (437)
T ss_pred             HHCCCCCCCcCCCCCCHHHHHHHcCC
Confidence            88888888888888888888887773

>PHA02795 ankyrin-like protein; Provisional

Probab=99.97  E-value=5.1e-30  Score=198.41  Aligned_cols=189  Identities=21%  Similarity=0.124  Sum_probs=168.3

Q ss_pred             HHHHcCChHHHHHHHHHHhhhhcC------CCCCCCchHHHHHHH--cCCHHHHHHHHhhcccccccccccCCCCcHHHH
Q 026440           16 KAAETGDSSTFKSLSKQQLLKSLS------LRNDDDRTLLHVAAS--CGHPEVVEILLSVDESANVVNAVDEEGWAPIHS   87 (238)
Q Consensus        16 ~a~~~g~~~~v~~l~~~~~~~~~~------~~~~~~~t~L~~A~~--~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~   87 (238)
                      .|+..+..|+++.|+.++.  +.+      ..+..++|+||+++.  .|+.+++++|+++|++..   .  ..+.||+|.
T Consensus        83 ~~~~~~~k~~~~~l~s~~~--~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn---~--~~~~t~lh~  155 (437)
T PHA02795         83 LFAYITYKDIISALVSKNY--MEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIY---K--IECLNAYFR  155 (437)
T ss_pred             HHhhcchHHHHHHHHhccc--ccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCC---C--CCCCCHHHH
Confidence            8999999999999999884  333      467779999999999  899999999999999843   3  345899999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCcccC------CCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHH
Q 026440           88 AASIGNVTIVEMLLSKGADVNLKN------DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA  161 (238)
Q Consensus        88 a~~~~~~~~~~~Ll~~~~~~~~~~------~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~  161 (238)
                      |+..++.+++++|+++|++.....      ..+.+++|.|...++.+++++|+++|++++..+..|.||||+|+..|+.+
T Consensus       156 A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~e  235 (437)
T PHA02795        156 GICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYID  235 (437)
T ss_pred             HHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHH
Confidence            999999999999999997543221      23678899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCccccCCCcHHHHHHHhCC--------HHHHHHHHhcCCCCccCCC
Q 026440          162 LCELLIEEGAEVDATDKAGQTPLMNAVICYN--------KEVALLLIRHGADVDVEDK  211 (238)
Q Consensus       162 ~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~--------~~~~~~Ll~~~~~~~~~~~  211 (238)
                      ++++|+++|++++.++..|.||||+|+..|+        .+++++|+++|++++....
T Consensus       236 iVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~~  293 (437)
T PHA02795        236 LVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIKL  293 (437)
T ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchhH
Confidence            9999999999999999999999999999884        6999999999999887654

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=6.3e-31  Score=198.60  Aligned_cols=190  Identities=31%  Similarity=0.445  Sum_probs=172.5

Q ss_pred             hccChHHHHHHHcCChHHHHHHHHHHh-------hhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCC
Q 026440            8 TIKDKDLFKAAETGDSSTFKSLSKQQL-------LKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE   80 (238)
Q Consensus         8 ~~~~~~l~~a~~~g~~~~v~~l~~~~~-------~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~   80 (238)
                      +.+.+++..|+++|+.++|++|+++..       ...+....-+|-+||..|+..||.++|+.|++.+++   +|.....
T Consensus        40 ~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~---VN~tT~T  116 (615)
T KOG0508|consen   40 QNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGAS---VNDTTRT  116 (615)
T ss_pred             cCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCc---ccccccc
Confidence            345678999999999999999999652       111223345688999999999999999999999877   6777778


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCH
Q 026440           81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS  160 (238)
Q Consensus        81 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~  160 (238)
                      ..|||..||..|+.+++++|+++|++++..+..|.|.|++||..|+.+++++|++.|++++.++..|.|+||.|+..|+.
T Consensus       117 NStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~v  196 (615)
T KOG0508|consen  117 NSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSV  196 (615)
T ss_pred             CCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHh
Q 026440          161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIR  201 (238)
Q Consensus       161 ~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  201 (238)
                      +++++|+.+|+.+. .|..|.|||..|+..|..++|+.|++
T Consensus       197 divq~Ll~~ga~i~-~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  197 DIVQLLLKHGAKID-VDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             HHHHHHHhCCceee-ecCCCCchHHHHhhhcchHHHHHHhc
Confidence            99999999999886 57779999999999999999999997

>PHA02792 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.7e-29  Score=202.35  Aligned_cols=116  Identities=20%  Similarity=0.227  Sum_probs=78.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC--CcHHHHHHhhCCH---HHHHHHHhcCCCCCccccCCCcHHHHHHHh
Q 026440          116 TALHYAASKGWLKIVELLISRGAKINSKDKVG--CTALHRGASTGNS---ALCELLIEEGAEVDATDKAGQTPLMNAVIC  190 (238)
Q Consensus       116 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~--~t~l~~a~~~~~~---~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~  190 (238)
                      .+++.|+..|+.+++++|+++|++++..|..|  .||||.|......   +++++++++|++++.++..|.||||+|+..
T Consensus       341 n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~  420 (631)
T PHA02792        341 NKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIES  420 (631)
T ss_pred             hHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHc
Confidence            34555555666666666666666666666553  4677766655543   346666777777777777777777777777


Q ss_pred             CCHHHHHHHHhcCCCCccCCCCCCchhhcccc---ccchHHHHH
Q 026440          191 YNKEVALLLIRHGADVDVEDKEGYTVLGRASN---DFRPILIDA  231 (238)
Q Consensus       191 ~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~---~~~~~~~~~  231 (238)
                      ++.+++++|+++|++++.+|..|.||+++|..   .+..++.+.
T Consensus       421 ~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~  464 (631)
T PHA02792        421 HSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAEL  464 (631)
T ss_pred             CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHH
Confidence            77777777777777777777777777777753   444444333

>PHA02730 ankyrin-like protein; Provisional

Probab=99.97  E-value=2.9e-29  Score=203.01  Aligned_cols=213  Identities=19%  Similarity=0.250  Sum_probs=174.4

Q ss_pred             HHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHH--HHHcCCHHHHHHHHh-----------------------------
Q 026440           18 AETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHV--AASCGHPEVVEILLS-----------------------------   66 (238)
Q Consensus        18 ~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~--A~~~~~~~~~~~Ll~-----------------------------   66 (238)
                      ..+++.|+++.|++.|  .+++.+|..|.||||+  |+..|+.|++++|++                             
T Consensus       210 ~~~n~~eiv~lLIs~G--adIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (672)
T PHA02730        210 SESLSKDVIKCLIDNN--VSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFR  287 (672)
T ss_pred             hhccCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhh
Confidence            5678999999999998  6889999999999996  555677999999998                             


Q ss_pred             ---hcccccccc-----------------cccCCCCc---------------------HHHHHHHcC---CHHHHHHHHH
Q 026440           67 ---VDESANVVN-----------------AVDEEGWA---------------------PIHSAASIG---NVTIVEMLLS  102 (238)
Q Consensus        67 ---~~~~~~~~~-----------------~~~~~~~t---------------------~l~~a~~~~---~~~~~~~Ll~  102 (238)
                         .+.+...++                 ..+..|..                     .|+.-.+.+   +.+++++|++
T Consensus       288 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs  367 (672)
T PHA02730        288 VTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLD  367 (672)
T ss_pred             cccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHH
Confidence               333322100                 02334433                     566666644   6899999999


Q ss_pred             cCCCCcccCCCCchHHHHHHHcCC----HHHHHHHHHcCC--CCCCCCCCCCcHHHH---HHhhC---------CHHHHH
Q 026440          103 KGADVNLKNDGGRTALHYAASKGW----LKIVELLISRGA--KINSKDKVGCTALHR---GASTG---------NSALCE  164 (238)
Q Consensus       103 ~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~l~~~~~--~~~~~~~~~~t~l~~---a~~~~---------~~~~~~  164 (238)
                      +|++++.. ..|.||||+|+..++    .+++++|+++|+  +++..+..|.||||.   |...+         ..++++
T Consensus       368 ~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk  446 (672)
T PHA02730        368 NGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFD  446 (672)
T ss_pred             CCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHH
Confidence            99999975 789999999988874    899999999987  588889999999984   33222         235799


Q ss_pred             HHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCC-CCCchhhcccc--ccchHHHHHHH
Q 026440          165 LLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDK-EGYTVLGRASN--DFRPILIDAAK  233 (238)
Q Consensus       165 ~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~g~tpl~~a~~--~~~~~~~~~~~  233 (238)
                      +|+.+|++++.+|..|.||||+|+..++.+++++|+++|++++.+|. .|.||+++|..  .++.++++.|.
T Consensus       447 ~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LL  518 (672)
T PHA02730        447 ILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLL  518 (672)
T ss_pred             HHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHH
Confidence            99999999999999999999999999999999999999999999997 59999999986  36777777764

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.97  E-value=1e-29  Score=215.24  Aligned_cols=221  Identities=24%  Similarity=0.244  Sum_probs=179.8

Q ss_pred             hhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHH-HHHHcCCHHHHHHHHhhcccccccccccCCCCcHH
Q 026440            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLH-VAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI   85 (238)
Q Consensus         7 ~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~-~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l   85 (238)
                      -+..++.++.|+..|+.+.++.+++.....+++..|..|+|||| .|+.+++.++++.|++.+.       .+..|.|||
T Consensus        14 ~~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-------~~~~G~T~L   86 (743)
T TIGR00870        14 LSDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-------RGAVGDTLL   86 (743)
T ss_pred             CCHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-------CCCcChHHH
Confidence            34567789999999999999999988545678888999999999 9999999999999998664       457899999


Q ss_pred             HHHHHcC---CHHHHHHHHHcCCC------Cc----ccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC--------
Q 026440           86 HSAASIG---NVTIVEMLLSKGAD------VN----LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD--------  144 (238)
Q Consensus        86 ~~a~~~~---~~~~~~~Ll~~~~~------~~----~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~--------  144 (238)
                      |.|+..+   ...++..+.+.+..      .+    .....|.||||.|+..|+.+++++|+++|++++..+        
T Consensus        87 h~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~  166 (743)
T TIGR00870        87 HAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKS  166 (743)
T ss_pred             HHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcC
Confidence            9998732   22344444443321      01    112469999999999999999999999999988543        


Q ss_pred             ------CCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhC---------CHHHHHHHHhcCCC---C
Q 026440          145 ------KVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICY---------NKEVALLLIRHGAD---V  206 (238)
Q Consensus       145 ------~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~---------~~~~~~~Ll~~~~~---~  206 (238)
                            ..|.+|++.|+..++.+++++|++.|++++.+|..|+||||+|+..+         ...+.+++++.++.   .
T Consensus       167 ~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~  246 (743)
T TIGR00870       167 QGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDS  246 (743)
T ss_pred             CCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCh
Confidence                  25889999999999999999999999999999999999999999876         23455666665544   3


Q ss_pred             ----ccCCCCCCchhhccccccchHHHHHHHH
Q 026440          207 ----DVEDKEGYTVLGRASNDFRPILIDAAKA  234 (238)
Q Consensus       207 ----~~~~~~g~tpl~~a~~~~~~~~~~~~~~  234 (238)
                          ++.|.+|.||+++|...++.++++.+..
T Consensus       247 ~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~  278 (743)
T TIGR00870       247 KELEVILNHQGLTPLKLAAKEGRIVLFRLKLA  278 (743)
T ss_pred             HhhhhhcCCCCCCchhhhhhcCCccHHHHHHH
Confidence                7789999999999999999888887654

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.97  E-value=6.1e-31  Score=220.73  Aligned_cols=224  Identities=35%  Similarity=0.476  Sum_probs=177.3

Q ss_pred             hhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHH
Q 026440            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH   86 (238)
Q Consensus         7 ~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~   86 (238)
                      ...+.+.++.|+..|..+.++.++..+  .+.+....+|.||||.|+..++.++++.++..++.   .+..+..|+||+|
T Consensus       371 ~~k~~~pl~la~~~g~~~~v~Lll~~g--a~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~---~~~~~~lG~T~lh  445 (1143)
T KOG4177|consen  371 EEKGFTPLHLAVKSGRVSVVELLLEAG--ADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGAS---PNAKAKLGYTPLH  445 (1143)
T ss_pred             cccCCcchhhhcccCchhHHHhhhhcc--CCcccCCCCCcceeeehhhccCcceEEEEeccCCC---hhhHhhcCCChhh
Confidence            345566788888888888888888777  34666677777777777777777777777776666   4445566677777


Q ss_pred             HHHHcC-CHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHH------------------------------
Q 026440           87 SAASIG-NVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS------------------------------  135 (238)
Q Consensus        87 ~a~~~~-~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~------------------------------  135 (238)
                      +|...+ ..+....+++.|.+++.....|.||||.|.+.|+.+++..+++                              
T Consensus       446 vaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~  525 (1143)
T KOG4177|consen  446 VAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKI  525 (1143)
T ss_pred             hhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHH
Confidence            777776 5666666666777777666677777777776666666655555                              


Q ss_pred             ---cCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCC
Q 026440          136 ---RGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKE  212 (238)
Q Consensus       136 ---~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~  212 (238)
                         .|+.++..+..+.||||.|+.+|+.++|++|+++|++++.+++.|+||||.|+..|..+++.+|+++|+++|..|.+
T Consensus       526 l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~  605 (1143)
T KOG4177|consen  526 LLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLD  605 (1143)
T ss_pred             HhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCccccc
Confidence               44445555667889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhhccccccchHHHHHHHHH
Q 026440          213 GYTVLGRASNDFRPILIDAAKAM  235 (238)
Q Consensus       213 g~tpl~~a~~~~~~~~~~~~~~~  235 (238)
                      |.||++.|+..++.++.+.++..
T Consensus       606 g~TpL~iA~~lg~~~~~k~l~~~  628 (1143)
T KOG4177|consen  606 GFTPLHIAVRLGYLSVVKLLKVV  628 (1143)
T ss_pred             CcchhHHHHHhcccchhhHHHhc
Confidence            99999999999998888887753

>PHA02730 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.7e-28  Score=198.67  Aligned_cols=204  Identities=16%  Similarity=0.163  Sum_probs=162.5

Q ss_pred             HHHHHHHHHhhhhcC-CCCCCCchHHHHHHHcC---CHHHHHHHHhhcccccccccccCCCCcHHHHHHHcC--CHHHHH
Q 026440           25 TFKSLSKQQLLKSLS-LRNDDDRTLLHVAASCG---HPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIG--NVTIVE   98 (238)
Q Consensus        25 ~v~~l~~~~~~~~~~-~~~~~~~t~L~~A~~~~---~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~   98 (238)
                      .++..++..  .+++ .+|..|+||||+|+..|   +.+++++|+++|++   ++..|..|+||||+|+..+  +.++++
T Consensus        22 ~~~~~~~~~--~~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAd---in~kD~~G~TPLh~Aa~~~~~~~eIv~   96 (672)
T PHA02730         22 KIKLEIETC--HNLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVE---RLCRNNEGLTPLGVYSKRKYVKSQIVH   96 (672)
T ss_pred             HHHHHHHHh--cchhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCC---CcccCCCCCChHHHHHHcCCCcHHHHH
Confidence            344445444  2344 67788999999999987   59999999999988   6778899999999999876  799999


Q ss_pred             HHHHcCCCC--cccCCCCchHHHHHHH--cCCHHHHHHHHH-cCCCCCCCCC-----CCCcHHHHHHhhCCHHHHHHHHh
Q 026440           99 MLLSKGADV--NLKNDGGRTALHYAAS--KGWLKIVELLIS-RGAKINSKDK-----VGCTALHRGASTGNSALCELLIE  168 (238)
Q Consensus        99 ~Ll~~~~~~--~~~~~~~~~~l~~a~~--~~~~~~~~~l~~-~~~~~~~~~~-----~~~t~l~~a~~~~~~~~~~~Ll~  168 (238)
                      +|++.|+..  +..+..+.+|++.++.  .++.+++++|++ .+++++....     .+.+|+.++...+.++++++|++
T Consensus        97 ~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~  176 (672)
T PHA02730         97 LLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLK  176 (672)
T ss_pred             HHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHH
Confidence            999996644  6666668889998888  788999999996 6778775533     57899999999999999999999


Q ss_pred             cCCCCC-------ccccCC-CcHHHHHH------HhCCHHHHHHHHhcCCCCccCCCCCCchhhc--cccccchHHHHHH
Q 026440          169 EGAEVD-------ATDKAG-QTPLMNAV------ICYNKEVALLLIRHGADVDVEDKEGYTVLGR--ASNDFRPILIDAA  232 (238)
Q Consensus       169 ~~~~~~-------~~~~~~-~t~l~~a~------~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~--a~~~~~~~~~~~~  232 (238)
                      +|++++       ..+..+ .|.||+++      ...+.|++++|+++|++++.+|..|.||||+  +...++.++++.|
T Consensus       177 ~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~L  256 (672)
T PHA02730        177 SECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLL  256 (672)
T ss_pred             cCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHH
Confidence            999984       122333 45555343      4568999999999999999999999999985  5566666666655


Q ss_pred             H
Q 026440          233 K  233 (238)
Q Consensus       233 ~  233 (238)
                      -
T Consensus       257 i  257 (672)
T PHA02730        257 I  257 (672)
T ss_pred             H
Confidence            4

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.96  E-value=3e-28  Score=207.52  Aligned_cols=176  Identities=27%  Similarity=0.338  Sum_probs=162.3

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHH
Q 026440           42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA  121 (238)
Q Consensus        42 ~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a  121 (238)
                      +.++.++|+.|+..|+.++++.|++.|.+   .+..|..|.||||+|+..|+.++++.|+++|++++.+|..|.||||.|
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d---~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A  598 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLD---PDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNA  598 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHH
Confidence            44567899999999999999999998887   677889999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHh
Q 026440          122 ASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIR  201 (238)
Q Consensus       122 ~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  201 (238)
                      +..|+.+++++|++.+...+.  ..+.++||.|+..|+.+++++|+++|++++.+|.+|.||||.|+..|+.+++++|++
T Consensus       599 ~~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~  676 (823)
T PLN03192        599 ISAKHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIM  676 (823)
T ss_pred             HHhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHH
Confidence            999999999999988765543  447789999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCccCCCCC-Cchhhcccc
Q 026440          202 HGADVDVEDKEG-YTVLGRASN  222 (238)
Q Consensus       202 ~~~~~~~~~~~g-~tpl~~a~~  222 (238)
                      +|++++..|..| .||..++..
T Consensus       677 ~GAdv~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        677 NGADVDKANTDDDFSPTELREL  698 (823)
T ss_pred             cCCCCCCCCCCCCCCHHHHHHH
Confidence            999999999888 899887654

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.96  E-value=1.9e-29  Score=172.96  Aligned_cols=222  Identities=26%  Similarity=0.358  Sum_probs=195.8

Q ss_pred             hhhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHH
Q 026440            6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI   85 (238)
Q Consensus         6 ~~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l   85 (238)
                      .+..++..+--+..+|+.+.++....-. +..+...+.+|+++++.|+-+++.+.+...+..+..   .+..+-.+++|+
T Consensus        58 ~~~lge~~~~~~~~s~nsd~~v~s~~~~-~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~r---gnevs~~p~s~~  133 (296)
T KOG0502|consen   58 RNALGESLLTVAVRSGNSDVAVQSAQLD-PDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGAR---GNEVSLMPWSPL  133 (296)
T ss_pred             HHhcCCcccchhhhcCCcHHHHHhhccC-CCCCCCCCchhhhhhhhcCCCCCcceeeeeeccccc---CCccccccCChh
Confidence            3556666777888999999988887655 444556677799999999999999999999987776   566677899999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHH
Q 026440           86 HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL  165 (238)
Q Consensus        86 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  165 (238)
                      .+++...+.+....+.++  .++..|..|.|||.+|+..|++.++++|++.|++++...+...++|++|++.|..+++++
T Consensus       134 slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~l  211 (296)
T KOG0502|consen  134 SLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVEL  211 (296)
T ss_pred             hHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHH
Confidence            999988888777777765  466788999999999999999999999999999999998999999999999999999999


Q ss_pred             HHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHH
Q 026440          166 LIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAK  233 (238)
Q Consensus       166 Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~  233 (238)
                      |+.+++++|.-|-+|.|||.+|++.++.++++.|++.|++++.-+..|.++++.|+..|+..+-..++
T Consensus       212 LL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr~Vqqvie  279 (296)
T KOG0502|consen  212 LLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYRIVQQVIE  279 (296)
T ss_pred             HHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999985444444

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.96  E-value=8.4e-30  Score=213.97  Aligned_cols=222  Identities=36%  Similarity=0.489  Sum_probs=200.7

Q ss_pred             hhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHH
Q 026440            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH   86 (238)
Q Consensus         7 ~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~   86 (238)
                      .+.+.+++|.++..++.+.+..+...+  ..-....+.+.+|+|.|+..|..++++.++..+..   .+.+++.|.||||
T Consensus       338 r~~g~t~lHlaa~~~~~~~~~~l~~~~--~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~---~~~~gk~gvTplh  412 (1143)
T KOG4177|consen  338 RTAGYTPLHLAAKEGQVEVAGALLEHG--AQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGAD---PNSAGKNGVTPLH  412 (1143)
T ss_pred             CcCCcccccHhhhhhhHHHHHHhhccc--cccCcccccCCcchhhhcccCchhHHHhhhhccCC---cccCCCCCcceee
Confidence            456778999999999999777776665  23345577899999999999999999999998887   7788899999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcC-CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHH
Q 026440           87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKG-WLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL  165 (238)
Q Consensus        87 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~-~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  165 (238)
                      .|...++..+++.+++.|+.++..+..|.|++|+|+..| ..+....++++|.+++.....|.||||+|...|+.+++..
T Consensus       413 ~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~l  492 (1143)
T KOG4177|consen  413 VAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQL  492 (1143)
T ss_pred             ehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHH
Confidence            999999999999999999999999999999999999999 7888899999999999999999999999999998888877


Q ss_pred             HHh---------------------------------cCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCC
Q 026440          166 LIE---------------------------------EGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKE  212 (238)
Q Consensus       166 Ll~---------------------------------~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~  212 (238)
                      +++                                 +|++++.++.+|.||||.|+.+|+..+|++|+++|++.+.+++.
T Consensus       493 lle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~  572 (1143)
T KOG4177|consen  493 LLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKL  572 (1143)
T ss_pred             hhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCC
Confidence            776                                 45667788888999999999999999999999999999999999


Q ss_pred             CCchhhccccccchHHHHHHH
Q 026440          213 GYTVLGRASNDFRPILIDAAK  233 (238)
Q Consensus       213 g~tpl~~a~~~~~~~~~~~~~  233 (238)
                      |+||||.|+..++.+++++|-
T Consensus       573 G~TPLH~Aa~~G~~~i~~LLl  593 (1143)
T KOG4177|consen  573 GYTPLHQAAQQGHNDIAELLL  593 (1143)
T ss_pred             CCChhhHHHHcChHHHHHHHH
Confidence            999999999999999888774

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.95  E-value=1.7e-26  Score=196.92  Aligned_cols=176  Identities=25%  Similarity=0.328  Sum_probs=160.3

Q ss_pred             cChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHH
Q 026440           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAA   89 (238)
Q Consensus        10 ~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~   89 (238)
                      ....|+.|+..|+.+.++.|++.+  .+++..|..|.||||+|+..|+.+++++|+++|.+   ++.+|..|+||||.|+
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~~G--~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad---in~~d~~G~TpL~~A~  599 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLKAK--LDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACN---VHIRDANGNTALWNAI  599 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCC---CCCcCCCCCCHHHHHH
Confidence            356799999999999999999887  57888999999999999999999999999998877   6778899999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhc
Q 026440           90 SIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEE  169 (238)
Q Consensus        90 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  169 (238)
                      ..|+.+++++|++.+...+.  ..+.++|+.|+..|+.++++.|+++|++++..|..|.||||.|+..|+.+++++|+++
T Consensus       600 ~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  677 (823)
T PLN03192        600 SAKHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMN  677 (823)
T ss_pred             HhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHc
Confidence            99999999999988765543  3567899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccCC-CcHHHHHHHhCC
Q 026440          170 GAEVDATDKAG-QTPLMNAVICYN  192 (238)
Q Consensus       170 ~~~~~~~~~~~-~t~l~~a~~~~~  192 (238)
                      |++++..+..| .||+..+.....
T Consensus       678 GAdv~~~~~~g~~t~~~l~~~~~~  701 (823)
T PLN03192        678 GADVDKANTDDDFSPTELRELLQK  701 (823)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHH
Confidence            99999999888 899988765433

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.94  E-value=2.1e-27  Score=163.00  Aligned_cols=201  Identities=27%  Similarity=0.289  Sum_probs=182.9

Q ss_pred             cChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHH
Q 026440           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAA   89 (238)
Q Consensus        10 ~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~   89 (238)
                      +...++.++-+|+...+..++.++  ..-+..+..+++|+..++...+.+.+..+.+..     ++..|+.|.|||.+|+
T Consensus        96 g~~~~~v~ap~~s~~k~sttltN~--~rgnevs~~p~s~~slsVhql~L~~~~~~~~n~-----VN~~De~GfTpLiWAa  168 (296)
T KOG0502|consen   96 GWSALLVAAPCGSVDKVSTTLTNG--ARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNNK-----VNACDEFGFTPLIWAA  168 (296)
T ss_pred             hhhhhhhcCCCCCcceeeeeeccc--ccCCccccccCChhhHHHHHHHHHHHHHHhhcc-----ccCccccCchHhHHHH
Confidence            556789999999999999998887  456677888999999999988888877776532     7888999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhc
Q 026440           90 SIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEE  169 (238)
Q Consensus        90 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  169 (238)
                      ..|+.+++++|++.|++++.......++|..|++.|..+++++|++.++++|..|-+|.|||-+|++.++.+|++.|+..
T Consensus       169 a~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~s  248 (296)
T KOG0502|consen  169 AKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNS  248 (296)
T ss_pred             hcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhc
Confidence            99999999999999999999888889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhh
Q 026440          170 GAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLG  218 (238)
Q Consensus       170 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~  218 (238)
                      |++++..+..|.+++..|+..|+- +++..+++-+.+..+|+.-.+|+|
T Consensus       249 GAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  249 GADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             CCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhcccCCCCCC
Confidence            999999999999999999999988 899999988888888877777765

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.94  E-value=1.9e-26  Score=176.95  Aligned_cols=206  Identities=33%  Similarity=0.501  Sum_probs=178.1

Q ss_pred             HHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcC
Q 026440           13 DLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIG   92 (238)
Q Consensus        13 ~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~   92 (238)
                      .+..|+..|+.+-+..|+..+  ...+..+.+|.|+||.||...+.+++++|++++++   ++..+..+|||+|.|+.+|
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~g--a~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~---Vn~~d~e~wtPlhaaascg  117 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRG--ASPNLCNVDGLTALHQACIDDNLEMVKFLVENGAN---VNAQDNEGWTPLHAAASCG  117 (527)
T ss_pred             HHHhccccccHHHHHHHhccC--CCccccCCccchhHHHHHhcccHHHHHHHHHhcCC---ccccccccCCcchhhcccc
Confidence            588899999999999999887  45678899999999999999999999999999988   8899999999999999999


Q ss_pred             CHHHHHHHHHcCCCCcccCCCCchHHHHHH------------Hc-C-CHHH------------HHHHHHcCCCCCCCCCC
Q 026440           93 NVTIVEMLLSKGADVNLKNDGGRTALHYAA------------SK-G-WLKI------------VELLISRGAKINSKDKV  146 (238)
Q Consensus        93 ~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~------------~~-~-~~~~------------~~~l~~~~~~~~~~~~~  146 (238)
                      +..++++++++|+++...+..|..|...+.            .. | .++.            ++..+..|...+..+..
T Consensus       118 ~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~r  197 (527)
T KOG0505|consen  118 YLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHAR  197 (527)
T ss_pred             cHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccc
Confidence            999999999999887666555544433221            11 1 1111            22333468888887777


Q ss_pred             CCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccc
Q 026440          147 GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASND  223 (238)
Q Consensus       147 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~  223 (238)
                      |.|.+|.|+..|..++.++|++.|.+++.+|.+|+||||.|+.=|..++++.|+++|++.+.....|.+|++++...
T Consensus       198 G~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  198 GATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADEE  274 (527)
T ss_pred             cchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999764

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.94  E-value=1.7e-26  Score=183.52  Aligned_cols=215  Identities=27%  Similarity=0.359  Sum_probs=190.1

Q ss_pred             hhhhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcH
Q 026440            5 IDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAP   84 (238)
Q Consensus         5 ~~~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~   84 (238)
                      ..+..+-+.||.|+.+|+.++++.|++...  .+...+..|.+|||+|++.|+.++++.++.++..   .+..+-.|.+|
T Consensus        44 ~qd~~gfTalhha~Lng~~~is~llle~ea--~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~---~na~~~e~~tp  118 (854)
T KOG0507|consen   44 LQDYSGFTLLHHAVLNGQNQISKLLLDYEA--LLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDI---LNAVNIENETP  118 (854)
T ss_pred             ccCccchhHHHHHHhcCchHHHHHHhcchh--hhhhhhccCcceEEehhhcCcchHHHHHHhcccC---CCcccccCcCc
Confidence            445578889999999999999999998763  4556678899999999999999999999998754   66777899999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--------CCCCCCCcHHHHHHh
Q 026440           85 IHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN--------SKDKVGCTALHRGAS  156 (238)
Q Consensus        85 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--------~~~~~~~t~l~~a~~  156 (238)
                      ||.|+..|+.+++.+|+++|+++-.++..+.|++..|++.|..++++.|++...+..        ..+..+-+|+|.|++
T Consensus       119 lhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaak  198 (854)
T KOG0507|consen  119 LHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAK  198 (854)
T ss_pred             cchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhh
Confidence            999999999999999999999999999999999999999999999999998743321        234456789999999


Q ss_pred             hCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccc
Q 026440          157 TGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFR  225 (238)
Q Consensus       157 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~  225 (238)
                      +|+.++++.|++.|++++.....| |+||.|+..|..+++.+|++.|.+..++|.+|+|.+++.+...-
T Consensus       199 ngh~~~~~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~~~  266 (854)
T KOG0507|consen  199 NGHVECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDLQE  266 (854)
T ss_pred             cchHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhcch
Confidence            999999999999999999776654 89999999999999999999999999999999999998776543

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.93  E-value=8.2e-26  Score=165.93  Aligned_cols=160  Identities=33%  Similarity=0.396  Sum_probs=144.6

Q ss_pred             cccccCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCchHHHHHHHc-----CCHHHHHHHHHcCCCCCCCCC-C
Q 026440           74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASK-----GWLKIVELLISRGAKINSKDK-V  146 (238)
Q Consensus        74 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~l~~a~~~-----~~~~~~~~l~~~~~~~~~~~~-~  146 (238)
                      +|.-|.+|+|.|||+++.+++++++.||+.| ++++.++..|+||++.++-.     ..++++..|+..| ++|.+.. .
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~  339 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQH  339 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhh
Confidence            6778899999999999999999999999987 68899999999999987653     3688899998876 5666544 4


Q ss_pred             CCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhc-CCCCccCCCCCCchhhccccccc
Q 026440          147 GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRH-GADVDVEDKEGYTVLGRASNDFR  225 (238)
Q Consensus       147 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~g~tpl~~a~~~~~  225 (238)
                      |+|+|++|+..|+.++++.|+.-|+|+|.+|.+|.|+|+.|+.+|+.||++.|+.. ++|+...|.+|-|+|++|...|+
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh  419 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGH  419 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCc
Confidence            89999999999999999999999999999999999999999999999999999986 79999999999999999999999


Q ss_pred             hHHHHHHHH
Q 026440          226 PILIDAAKA  234 (238)
Q Consensus       226 ~~~~~~~~~  234 (238)
                      .+|--+|=.
T Consensus       420 ~eIa~mlYa  428 (452)
T KOG0514|consen  420 REIAVMLYA  428 (452)
T ss_pred             hHHHHHHHH
Confidence            999877643

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=1.5e-25  Score=189.94  Aligned_cols=212  Identities=22%  Similarity=0.148  Sum_probs=162.6

Q ss_pred             ccchhhhccChHHH-HHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcC---CHHHHHHHHhhccccc-----
Q 026440            2 DMDIDQTIKDKDLF-KAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG---HPEVVEILLSVDESAN-----   72 (238)
Q Consensus         2 ~~~~~~~~~~~~l~-~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~---~~~~~~~Ll~~~~~~~-----   72 (238)
                      |++..+..+.++|| .|+.+++.++++.|++.+.      .+..|.||||.|+..+   ..++++.+...+....     
T Consensus        44 ~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~------~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~  117 (743)
T TIGR00870        44 NINCPDRLGRSALFVAAIENENLELTELLLNLSC------RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELA  117 (743)
T ss_pred             CCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC------CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhh
Confidence            44556778899999 8999999999999988762      5778999999999832   2233444443322100     


Q ss_pred             --ccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccC--------------CCCchHHHHHHHcCCHHHHHHHHHc
Q 026440           73 --VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN--------------DGGRTALHYAASKGWLKIVELLISR  136 (238)
Q Consensus        73 --~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~--------------~~~~~~l~~a~~~~~~~~~~~l~~~  136 (238)
                        ........|.||||+|+..++.++++.|+++|++++..+              ..|.+||+.|+..|+.+++++|+++
T Consensus       118 ~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~  197 (743)
T TIGR00870       118 NDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSED  197 (743)
T ss_pred             ccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcC
Confidence              011123569999999999999999999999999987542              2588999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHhhC---------CHHHHHHHHhcCCCC-------CccccCCCcHHHHHHHhCCHHHHHHHH
Q 026440          137 GAKINSKDKVGCTALHRGASTG---------NSALCELLIEEGAEV-------DATDKAGQTPLMNAVICYNKEVALLLI  200 (238)
Q Consensus       137 ~~~~~~~~~~~~t~l~~a~~~~---------~~~~~~~Ll~~~~~~-------~~~~~~~~t~l~~a~~~~~~~~~~~Ll  200 (238)
                      |++++..|..|+||+|.|+..+         ...+.++++..+...       +..|.+|.||||.|+..|+.+++++|+
T Consensus       198 gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL  277 (743)
T TIGR00870       198 PADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKL  277 (743)
T ss_pred             CcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHH
Confidence            9999999999999999999986         234666776665543       556889999999999999999999999


Q ss_pred             hcCCCCccCCCCCCchhhc
Q 026440          201 RHGADVDVEDKEGYTVLGR  219 (238)
Q Consensus       201 ~~~~~~~~~~~~g~tpl~~  219 (238)
                      +.+++.......+..|.+.
T Consensus       278 ~~~~~~kk~~a~~~~~~~~  296 (743)
T TIGR00870       278 AIKYKQKKFVAWPNGQQLL  296 (743)
T ss_pred             HHHHhcceeeccCcchHhH
Confidence            9655544333334444443

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.93  E-value=1.4e-25  Score=178.45  Aligned_cols=221  Identities=26%  Similarity=0.311  Sum_probs=195.8

Q ss_pred             cChHHHHHHHcCChHHHHHHHHHHh-----------hhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhccccccccccc
Q 026440           10 KDKDLFKAAETGDSSTFKSLSKQQL-----------LKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD   78 (238)
Q Consensus        10 ~~~~l~~a~~~g~~~~v~~l~~~~~-----------~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~   78 (238)
                      ..+.+..|++.|+++.+..+++...           ....+..|..|.|+||.|+.+|+.++++.|+++...   +...+
T Consensus         3 k~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~---ldl~d   79 (854)
T KOG0507|consen    3 KKQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEAL---LDLCD   79 (854)
T ss_pred             hhhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhh---hhhhh
Confidence            3567899999999999999997532           345677788999999999999999999999987776   55566


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhC
Q 026440           79 EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG  158 (238)
Q Consensus        79 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~  158 (238)
                      ..|.+|||+|.+.|+.++++.++..+..++..+..|.+|||.+++.|+.+++.+|+.+|.+.-..+..+.|++..|++.|
T Consensus        80 ~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfg  159 (854)
T KOG0507|consen   80 TKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFG  159 (854)
T ss_pred             ccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhh
Confidence            88999999999999999999999999888888999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCCCC--------CccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHH
Q 026440          159 NSALCELLIEEGAEV--------DATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILID  230 (238)
Q Consensus       159 ~~~~~~~Ll~~~~~~--------~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~  230 (238)
                      ..++++.|+....+.        ..++..+.+|+|.|+++|+.++++.|++.|.+++.....| |++|.|+--|..+++.
T Consensus       160 r~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~g-talheaalcgk~evvr  238 (854)
T KOG0507|consen  160 RAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVR  238 (854)
T ss_pred             hhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhh
Confidence            999999999863322        2345567899999999999999999999999999998888 6999999999977776


Q ss_pred             HHHH
Q 026440          231 AAKA  234 (238)
Q Consensus       231 ~~~~  234 (238)
                      .+..
T Consensus       239 ~ll~  242 (854)
T KOG0507|consen  239 FLLE  242 (854)
T ss_pred             HHHh
Confidence            6544

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.93  E-value=2.1e-24  Score=150.21  Aligned_cols=138  Identities=26%  Similarity=0.317  Sum_probs=107.6

Q ss_pred             ccCCCCcHHHHHHHcCCH----HHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHH---HHHHHHHcCCCCCCCC-CCCC
Q 026440           77 VDEEGWAPIHSAASIGNV----TIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK---IVELLISRGAKINSKD-KVGC  148 (238)
Q Consensus        77 ~~~~~~t~l~~a~~~~~~----~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~---~~~~l~~~~~~~~~~~-~~~~  148 (238)
                      .+..+.++++.|++.|+.    +++++|++.|..++..+..|.||||+|+..|+.+   ++++|++.|++++..+ ..|.
T Consensus        16 ~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~   95 (166)
T PHA02743         16 IDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGN   95 (166)
T ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCC
Confidence            345566777777777776    4555666777777777777888888888777644   3778888888888877 4688


Q ss_pred             cHHHHHHhhCCHHHHHHHHh-cCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCC
Q 026440          149 TALHRGASTGNSALCELLIE-EGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGY  214 (238)
Q Consensus       149 t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~  214 (238)
                      ||||+|+..++.+++++|+. .|++++.++..|.||||+|+..++.+++++|+++|++++.++..|.
T Consensus        96 TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743         96 TLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             cHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCc
Confidence            88888888888888888884 6888888888888888888888888888888888888888877664

>PHA02792 ankyrin-like protein; Provisional

Probab=99.93  E-value=6.1e-24  Score=170.74  Aligned_cols=202  Identities=19%  Similarity=0.165  Sum_probs=166.4

Q ss_pred             chhhhccChHHHHHHHcC-------ChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcC--CHHHHHHHHhhcc-----
Q 026440            4 DIDQTIKDKDLFKAAETG-------DSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG--HPEVVEILLSVDE-----   69 (238)
Q Consensus         4 ~~~~~~~~~~l~~a~~~g-------~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~--~~~~~~~Ll~~~~-----   69 (238)
                      +..+..+.++||+|+.++       +.|+++.|++++  ..++..+..|.||||+|+.+.  +.|+++.|+..-.     
T Consensus       169 ~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g--~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~  246 (631)
T PHA02792        169 DYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHE--KEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNEL  246 (631)
T ss_pred             ccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCC--CCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccch
Confidence            356777899999999999       899999999998  567788999999999999999  7788888876100     


Q ss_pred             -----------------ccc--------------c---------------------------------------------
Q 026440           70 -----------------SAN--------------V---------------------------------------------   73 (238)
Q Consensus        70 -----------------~~~--------------~---------------------------------------------   73 (238)
                                       +.+              .                                             
T Consensus       247 ~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~  326 (631)
T PHA02792        247 MNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKC  326 (631)
T ss_pred             HhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHH
Confidence                             000              0                                             


Q ss_pred             -----cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC--chHHHHHHHcCCH---HHHHHHHHcCCCCCCC
Q 026440           74 -----VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGG--RTALHYAASKGWL---KIVELLISRGAKINSK  143 (238)
Q Consensus        74 -----~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~--~~~l~~a~~~~~~---~~~~~l~~~~~~~~~~  143 (238)
                           .+........+++.|+..++.+++++|+++|++++..+..|  .||||.|......   +++++++++|++++..
T Consensus       327 LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~k  406 (631)
T PHA02792        327 MIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKI  406 (631)
T ss_pred             HHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccc
Confidence                 00000123456788889999999999999999999888764  6999988776654   4688899999999999


Q ss_pred             CCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHH--h--------CCHHHHHHHHhcCCCCc
Q 026440          144 DKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVI--C--------YNKEVALLLIRHGADVD  207 (238)
Q Consensus       144 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~--~--------~~~~~~~~Ll~~~~~~~  207 (238)
                      |..|.||||.|+..++.+++++|+++|++++.++..|.||+++|+.  .        ...++++.|+++|++++
T Consensus       407 D~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~  480 (631)
T PHA02792        407 DKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTIE  480 (631)
T ss_pred             cccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChh
Confidence            9999999999999999999999999999999999999999999975  2        22567999999998875

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.92  E-value=1.2e-23  Score=146.34  Aligned_cols=141  Identities=23%  Similarity=0.284  Sum_probs=116.6

Q ss_pred             cCCCCCCCchHHHHHHHcCCH----HHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHH---HHHHHHHcCCCCccc
Q 026440           38 LSLRNDDDRTLLHVAASCGHP----EVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT---IVEMLLSKGADVNLK  110 (238)
Q Consensus        38 ~~~~~~~~~t~L~~A~~~~~~----~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~---~~~~Ll~~~~~~~~~  110 (238)
                      ....+..+.++||.||+.|+.    +++++|.+.+..   ++..+..|+||||+|+..++.+   ++++|++.|++++.+
T Consensus        13 ~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~---~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~   89 (166)
T PHA02743         13 AVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHL---LHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINAR   89 (166)
T ss_pred             HhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchh---hhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCC
Confidence            344566778889999999987    455566655544   6667788999999999888754   478999999999888


Q ss_pred             C-CCCchHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCC
Q 026440          111 N-DGGRTALHYAASKGWLKIVELLIS-RGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQ  181 (238)
Q Consensus       111 ~-~~~~~~l~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~  181 (238)
                      + ..|.||||+|+..++.+++++|++ .|++++..+..|.||+|+|+..++.+++++|+++|++++.++..|.
T Consensus        90 d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743         90 ELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCc
Confidence            7 479999999999999999999995 7999999998999999999999999999999999999988876664

>PHA02741 hypothetical protein; Provisional

Probab=99.91  E-value=2.7e-23  Score=145.26  Aligned_cols=128  Identities=28%  Similarity=0.354  Sum_probs=89.6

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHH------cCCCCcccCCCCchHHHHHHHcCC----HHHHHHHHHcCCCCCCCCC-C
Q 026440           78 DEEGWAPIHSAASIGNVTIVEMLLS------KGADVNLKNDGGRTALHYAASKGW----LKIVELLISRGAKINSKDK-V  146 (238)
Q Consensus        78 ~~~~~t~l~~a~~~~~~~~~~~Ll~------~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~l~~~~~~~~~~~~-~  146 (238)
                      +..|.||||+|++.|+.++++.|+.      .|++++.++..|.||||+|+..|+    .+++++|++.|++++..+. .
T Consensus        18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~   97 (169)
T PHA02741         18 NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLE   97 (169)
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCC
Confidence            4455556666666666655555532      235556666667777777777766    4677777777777777764 6


Q ss_pred             CCcHHHHHHhhCCHHHHHHHHh-cCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCC
Q 026440          147 GCTALHRGASTGNSALCELLIE-EGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGAD  205 (238)
Q Consensus       147 ~~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~  205 (238)
                      |.||||+|+..++.+++++|+. .|++++..+..|.||||+|+..++.+++++|++.++.
T Consensus        98 g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         98 GDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            7788888888888888887776 4777777777788888888888888888888776544

>PHA02741 hypothetical protein; Provisional

Probab=99.91  E-value=2.9e-23  Score=145.13  Aligned_cols=127  Identities=23%  Similarity=0.328  Sum_probs=115.8

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHH------cCCCCCCCCCCCCcHHHHHHhhCC----HHHHHHHHhcCCCCCcccc
Q 026440          109 LKNDGGRTALHYAASKGWLKIVELLIS------RGAKINSKDKVGCTALHRGASTGN----SALCELLIEEGAEVDATDK  178 (238)
Q Consensus       109 ~~~~~~~~~l~~a~~~~~~~~~~~l~~------~~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~Ll~~~~~~~~~~~  178 (238)
                      .++..|.||||+|++.|+.++++.|+.      .|++++..|..|.||||+|+..++    .+++++|++.|++++.++.
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~   95 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEM   95 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCc
Confidence            456789999999999999999998854      357788899999999999999998    5899999999999999885


Q ss_pred             -CCCcHHHHHHHhCCHHHHHHHHh-cCCCCccCCCCCCchhhccccccchHHHHHHHHH
Q 026440          179 -AGQTPLMNAVICYNKEVALLLIR-HGADVDVEDKEGYTVLGRASNDFRPILIDAAKAM  235 (238)
Q Consensus       179 -~~~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~  235 (238)
                       .|.||||+|+..++.+++++|++ .|++++..|..|.||+++|+..++.++++.|...
T Consensus        96 ~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~  154 (169)
T PHA02741         96 LEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREI  154 (169)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHH
Confidence             89999999999999999999998 5999999999999999999999999998888754

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.90  E-value=1.9e-23  Score=153.57  Aligned_cols=179  Identities=32%  Similarity=0.447  Sum_probs=155.6

Q ss_pred             CChHHHHHHHHHH-------hhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHc--
Q 026440           21 GDSSTFKSLSKQQ-------LLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASI--   91 (238)
Q Consensus        21 g~~~~v~~l~~~~-------~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~--   91 (238)
                      -+.+.|...+..+       +...+|.-|.+|+|+||||+.++++++|+.|++.|.  ..++.++..|+||+++++-.  
T Consensus       237 a~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgv--C~VD~qNrAGYtpiMLaALA~l  314 (452)
T KOG0514|consen  237 SDPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGV--CDVDQQNRAGYTPVMLAALAKL  314 (452)
T ss_pred             CCHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCc--ccccccccccccHHHHHHHHhh
Confidence            3566776666543       245678889999999999999999999999998654  45888999999999998754  


Q ss_pred             ---CCHHHHHHHHHcCCCCccc-CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHH
Q 026440           92 ---GNVTIVEMLLSKGADVNLK-NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLI  167 (238)
Q Consensus        92 ---~~~~~~~~Ll~~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll  167 (238)
                         .+..++..|.+.| ++|.+ .-.|.|+|+.|+.+|+.++++.|+..|+++|..|..|.|+|++|+..|+.+++++|+
T Consensus       315 k~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLL  393 (452)
T KOG0514|consen  315 KQPADRTVVERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLL  393 (452)
T ss_pred             cchhhHHHHHHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHh
Confidence               3678899999876 44443 336999999999999999999999999999999999999999999999999999999


Q ss_pred             hc-CCCCCccccCCCcHHHHHHHhCCHHHHHHHHhc
Q 026440          168 EE-GAEVDATDKAGQTPLMNAVICYNKEVALLLIRH  202 (238)
Q Consensus       168 ~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  202 (238)
                      .. ++++...|.+|.|+|.+|...|+.||...|..+
T Consensus       394 A~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  394 AVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             ccCcccceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            87 899999999999999999999999999988764

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.90  E-value=3.1e-22  Score=149.60  Aligned_cols=159  Identities=20%  Similarity=0.233  Sum_probs=129.6

Q ss_pred             cCCCCCCCc-hHHHHHHHcCCHHHHHHHHhhccccccccc-ccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCC
Q 026440           38 LSLRNDDDR-TLLHVAASCGHPEVVEILLSVDESANVVNA-VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK-NDGG  114 (238)
Q Consensus        38 ~~~~~~~~~-t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~-~~~~  114 (238)
                      +..+|..++ ++||.|+..|+.+++++|+++|++++..+. .+..|.||||+|+..++.+++++|+++|++++.. +..|
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g  104 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAK  104 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCC
Confidence            556677666 457777888999999999999988543221 2468999999999999999999999999999985 4579


Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHH
Q 026440          115 RTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE  194 (238)
Q Consensus       115 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  194 (238)
                      .||||.|+..++.+++++|++.|++++..+..|.||+|.|+..++..++..+...  .   .+..+.+|.+++   .+.|
T Consensus       105 ~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~---~n~e  176 (300)
T PHA02884        105 ITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDN--E---ISNFYKHPKKIL---INFD  176 (300)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCC--c---ccccccChhhhh---ccHH
Confidence            9999999999999999999999999999999999999999998888877655432  2   344567788865   4789


Q ss_pred             HHHHHHhcCC
Q 026440          195 VALLLIRHGA  204 (238)
Q Consensus       195 ~~~~Ll~~~~  204 (238)
                      ++++|+++++
T Consensus       177 i~~~Lish~v  186 (300)
T PHA02884        177 ILKILVSHFI  186 (300)
T ss_pred             HHHHHHHHHH
Confidence            9999999876

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.90  E-value=2.2e-22  Score=150.45  Aligned_cols=141  Identities=20%  Similarity=0.185  Sum_probs=99.0

Q ss_pred             ccccCCCCc-HHHHHHHcCCHHHHHHHHHcCCCCcccC----CCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCC
Q 026440           75 NAVDEEGWA-PIHSAASIGNVTIVEMLLSKGADVNLKN----DGGRTALHYAASKGWLKIVELLISRGAKINSK-DKVGC  148 (238)
Q Consensus        75 ~~~~~~~~t-~l~~a~~~~~~~~~~~Ll~~~~~~~~~~----~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~-~~~~~  148 (238)
                      ..+|..+++ +|+.|+..++.+++++|+++|++++.++    ..|.||||+|+..++.+++++|+++|++++.. +..|.
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~  105 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKI  105 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCC
Confidence            334455554 4566666677888888888887777653    46778888888888888888888888887765 34677


Q ss_pred             cHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhcc
Q 026440          149 TALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRA  220 (238)
Q Consensus       149 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a  220 (238)
                      ||||.|+..++.+++++|+..|++++.++..|.||||+|+..++.+++..+.  |..   .+..+.+|..++
T Consensus       106 TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~  172 (300)
T PHA02884        106 TPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC--DNE---ISNFYKHPKKIL  172 (300)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CCc---ccccccChhhhh
Confidence            8888888888888888888888888777777888888887777777665543  222   234455666654

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.90  E-value=8.7e-23  Score=140.83  Aligned_cols=97  Identities=27%  Similarity=0.355  Sum_probs=66.3

Q ss_pred             CCCCchHHHHHHHcCCH---HHHHHHHHcCCCCCCCC-CCCCcHHHHHHhhCCHHHHHHHHhc-CCCCCccccCCCcHHH
Q 026440          111 NDGGRTALHYAASKGWL---KIVELLISRGAKINSKD-KVGCTALHRGASTGNSALCELLIEE-GAEVDATDKAGQTPLM  185 (238)
Q Consensus       111 ~~~~~~~l~~a~~~~~~---~~~~~l~~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~  185 (238)
                      +..|.||||+|+..|+.   +++++|++.|++++..+ ..|.||||+|+..++.+++++|+.. |++++.++..|.||||
T Consensus        52 d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~  131 (154)
T PHA02736         52 NRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYY  131 (154)
T ss_pred             cCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHH
Confidence            45566666666666654   34666677777777665 3677777777777777777777763 6777777777777777


Q ss_pred             HHHHhCCHHHHHHHHhcCCCCc
Q 026440          186 NAVICYNKEVALLLIRHGADVD  207 (238)
Q Consensus       186 ~a~~~~~~~~~~~Ll~~~~~~~  207 (238)
                      +|+..++.+++++|+++|++.+
T Consensus       132 ~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        132 VACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             HHHHcCCHHHHHHHHHcCCCCC
Confidence            7777777777777777776654

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.89  E-value=1.4e-22  Score=139.87  Aligned_cols=135  Identities=19%  Similarity=0.236  Sum_probs=112.5

Q ss_pred             cCCCCCCCchHHHHHHHcCCHHHHHHHHhhc----ccccccccccCCCCcHHHHHHHcCCH---HHHHHHHHcCCCCccc
Q 026440           38 LSLRNDDDRTLLHVAASCGHPEVVEILLSVD----ESANVVNAVDEEGWAPIHSAASIGNV---TIVEMLLSKGADVNLK  110 (238)
Q Consensus        38 ~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~----~~~~~~~~~~~~~~t~l~~a~~~~~~---~~~~~Ll~~~~~~~~~  110 (238)
                      ....+..|.||||+|+..|+.+  ..+...+    ..+......+..|+||||+|+..++.   +++++|++.|++++.+
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~   87 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGK   87 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcccc
Confidence            3455778999999999999842  3322211    11222445678999999999999886   4688999999999998


Q ss_pred             C-CCCchHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCC
Q 026440          111 N-DGGRTALHYAASKGWLKIVELLISR-GAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVD  174 (238)
Q Consensus       111 ~-~~~~~~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~  174 (238)
                      + ..|.||||+|+..++.+++++|++. |++++..+..|.||+|+|+..++.+++++|+++|++.+
T Consensus        88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         88 ERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            7 4899999999999999999999984 99999999999999999999999999999999998765

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.87  E-value=6.6e-21  Score=153.46  Aligned_cols=222  Identities=27%  Similarity=0.311  Sum_probs=163.0

Q ss_pred             ccChHHHHHHHcCChHHHHHHHHHHh-------hhhcCCCCCCCchHHHHHHHc---CCHHHHHHHHhhcccccccc---
Q 026440            9 IKDKDLFKAAETGDSSTFKSLSKQQL-------LKSLSLRNDDDRTLLHVAASC---GHPEVVEILLSVDESANVVN---   75 (238)
Q Consensus         9 ~~~~~l~~a~~~g~~~~v~~l~~~~~-------~~~~~~~~~~~~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~~~---   75 (238)
                      ..+..+..|...|..+....+.+...       -..++.+-..|.|.||.|..+   ++-++++.|++.-.  ..++   
T Consensus       100 ~d~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p--~lind~~  177 (782)
T KOG3676|consen  100 FDRDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFP--KLINDIY  177 (782)
T ss_pred             cchhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhH--HHhhhhh
Confidence            34467888999999999888887652       134555567799999999884   44588999987433  2222   


Q ss_pred             -cccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccC-----------------------CCCchHHHHHHHcCCHHHHH
Q 026440           76 -AVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-----------------------DGGRTALHYAASKGWLKIVE  131 (238)
Q Consensus        76 -~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-----------------------~~~~~~l~~a~~~~~~~~~~  131 (238)
                       .-.+.|+||||+|+.+.+.++++.|++.|++++.+-                       +.|..||..|+..++.++++
T Consensus       178 ~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivr  257 (782)
T KOG3676|consen  178 TSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVR  257 (782)
T ss_pred             hhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHH
Confidence             233689999999999999999999999999876441                       13567888888888888888


Q ss_pred             HHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCC--CCccccCCCcHHHHHHHhCCHHHHHHHHhc-------
Q 026440          132 LLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE--VDATDKAGQTPLMNAVICYNKEVALLLIRH-------  202 (238)
Q Consensus       132 ~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~--~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-------  202 (238)
                      +|+++|+|++..|..|+|.||..+..-..++..+++++|++  ...+|..|-|||-.|++.|..++.+.+++.       
T Consensus       258 lLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~k~~~W~  337 (782)
T KOG3676|consen  258 LLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERRKFTDWA  337 (782)
T ss_pred             HHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHhhccccee
Confidence            88888888888888888888888888777888888888887  777778888888888888888888888776       


Q ss_pred             -------CCCCccCCC--CCCchhhccccccchHHHHHH
Q 026440          203 -------GADVDVEDK--EGYTVLGRASNDFRPILIDAA  232 (238)
Q Consensus       203 -------~~~~~~~~~--~g~tpl~~a~~~~~~~~~~~~  232 (238)
                             ..+.+..|.  +-.+.|..++.....+=++.+
T Consensus       338 YGpvtsslYpL~~iDT~~n~~SvLeivvyg~~~eHl~Ll  376 (782)
T KOG3676|consen  338 YGPVTSSLYPLNSIDTIGNENSVLEIVVYGIKNEHLELL  376 (782)
T ss_pred             ecccccccccchhcccccchhhhhhhhhcCCcHHHHHHH
Confidence                   233344443  334566666655444434333

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.87  E-value=1.4e-21  Score=150.40  Aligned_cols=184  Identities=32%  Similarity=0.389  Sum_probs=156.5

Q ss_pred             HHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCH
Q 026440           48 LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWL  127 (238)
Q Consensus        48 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~  127 (238)
                      .+-.||..|..+-+..|+..+..+   +..+.+|.|++|-||...+.+|+++|+++|++++..|..++||+|.|+..|+.
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~---~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~  119 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASP---NLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYL  119 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCc---cccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccH
Confidence            366788999999999999988774   66678999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCcHHHHHHhhC--------------CH-------------HHHHHHHhcCCCCCccccCC
Q 026440          128 KIVELLISRGAKINSKDKVGCTALHRGASTG--------------NS-------------ALCELLIEEGAEVDATDKAG  180 (238)
Q Consensus       128 ~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~--------------~~-------------~~~~~Ll~~~~~~~~~~~~~  180 (238)
                      .++++++..|+++...+..|..|...+..-.              .+             ++-+|+. .|...+..+..|
T Consensus       120 ~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~-~G~~~d~~~~rG  198 (527)
T KOG0505|consen  120 NIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLN-AGAELDARHARG  198 (527)
T ss_pred             HHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHh-cccccccccccc
Confidence            9999999999998777766665544322111              11             1223333 577777788789


Q ss_pred             CcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHHHH
Q 026440          181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKAM  235 (238)
Q Consensus       181 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~  235 (238)
                      .|.||.|+..|..++.++|+++|++++++|.+||||||.|+..+..++.+.+-..
T Consensus       199 ~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~  253 (527)
T KOG0505|consen  199 ATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEH  253 (527)
T ss_pred             chHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999888876553

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.87  E-value=2.5e-21  Score=155.90  Aligned_cols=188  Identities=25%  Similarity=0.279  Sum_probs=156.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhcccc------cccccccCCCCcHHHHHHHc---CCHHHHHHHHHcCCC-----CcccCC
Q 026440           47 TLLHVAASCGHPEVVEILLSVDESA------NVVNAVDEEGWAPIHSAASI---GNVTIVEMLLSKGAD-----VNLKND  112 (238)
Q Consensus        47 t~L~~A~~~~~~~~~~~Ll~~~~~~------~~~~~~~~~~~t~l~~a~~~---~~~~~~~~Ll~~~~~-----~~~~~~  112 (238)
                      .++..|...+..+.+..+...+...      +.++.+...|.|+||.|.-+   ++.++++.|++.-..     ......
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            5677787778877777776654322      33666678899999999874   456889999985321     111234


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC-----------------------CCCCcHHHHHHhhCCHHHHHHHHhc
Q 026440          113 GGRTALHYAASKGWLKIVELLISRGAKINSKD-----------------------KVGCTALHRGASTGNSALCELLIEE  169 (238)
Q Consensus       113 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~-----------------------~~~~t~l~~a~~~~~~~~~~~Ll~~  169 (238)
                      .|.|+||+|+.+.+.+++++|++.|+|++.+.                       ..|+.||..|+-.++.+++++|+++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~  262 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH  262 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc
Confidence            79999999999999999999999999987521                       2467899999999999999999999


Q ss_pred             CCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCC--CccCCCCCCchhhccccccchHHHHHHHH
Q 026440          170 GAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGAD--VDVEDKEGYTVLGRASNDFRPILIDAAKA  234 (238)
Q Consensus       170 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~--~~~~~~~g~tpl~~a~~~~~~~~~~~~~~  234 (238)
                      |+|++.+|.+|+|.||..+.....++...++++|++  ..++|+.|.|||.+|++.++.+|++.+-+
T Consensus       263 gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile  329 (782)
T KOG3676|consen  263 GADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILE  329 (782)
T ss_pred             CCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHH
Confidence            999999999999999999999999999999999999  99999999999999999999777666544

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.87  E-value=6e-21  Score=126.70  Aligned_cols=140  Identities=34%  Similarity=0.368  Sum_probs=94.3

Q ss_pred             HHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHH
Q 026440           49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK  128 (238)
Q Consensus        49 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~  128 (238)
                      +-.|+..+....|+.|++  ..++.++.+|.++.||||.|+.+|+.++++-|+..|++.+.+...|+||||.||..++.+
T Consensus        67 ~lwaae~nrl~eV~~lL~--e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   67 LLWAAEKNRLTEVQRLLS--EKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHhhccHHHHHHHHH--hccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchh
Confidence            456666677777777766  344456677777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCH-HHHHHHH-hcCCCCCccccCCCcHHHHHHHh
Q 026440          129 IVELLISRGAKINSKDKVGCTALHRGASTGNS-ALCELLI-EEGAEVDATDKAGQTPLMNAVIC  190 (238)
Q Consensus       129 ~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~-~~~~~Ll-~~~~~~~~~~~~~~t~l~~a~~~  190 (238)
                      ++.+|+++|++++....-..||||+|+...+. ..+.+|+ ..++++...+..+.||+.+|-+.
T Consensus       145 va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  145 VAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRT  208 (228)
T ss_pred             HHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHh
Confidence            77777777777777666666777777666553 3444443 33566666666666777766554

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.86  E-value=9.8e-21  Score=125.68  Aligned_cols=152  Identities=29%  Similarity=0.302  Sum_probs=131.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHH
Q 026440           83 APIHSAASIGNVTIVEMLLSKGAD-VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA  161 (238)
Q Consensus        83 t~l~~a~~~~~~~~~~~Ll~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~  161 (238)
                      ..+.+|+..+....++.|++..++ ++.+|.+++||||-|+..|+.++++.|+..|++.+.+...|+||||.||..++.+
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchh
Confidence            346788888999999999987654 7888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCccccCCCcHHHHHHHhCCH-HHHHHHH-hcCCCCccCCCCCCchhhccccccc-hHHHHHHHH
Q 026440          162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNK-EVALLLI-RHGADVDVEDKEGYTVLGRASNDFR-PILIDAAKA  234 (238)
Q Consensus       162 ~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~-~~~~~Ll-~~~~~~~~~~~~g~tpl~~a~~~~~-~~~~~~~~~  234 (238)
                      ++..|+++|+|++.......||||.|+...+. ..+.+|+ +.+.++..++..+.||+++|-+.+- .-+++.++.
T Consensus       145 va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s~~lfe~~e~  220 (228)
T KOG0512|consen  145 VAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMSHYLFEIVEG  220 (228)
T ss_pred             HHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhhHHHHHHHHH
Confidence            99999999999999988899999999987764 5666554 5689999999999999999976532 234454443

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.85  E-value=2.8e-20  Score=116.27  Aligned_cols=89  Identities=45%  Similarity=0.697  Sum_probs=75.0

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHH
Q 026440          118 LHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVAL  197 (238)
Q Consensus       118 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  197 (238)
                      ||.|++.|+.+++++|++.+.+++.    |.+|+|+|+..|+.+++++|+++|++++.++..|+||||+|+..++.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            6788888888888888888877765    778999999999999999999999988888888999999999999999999


Q ss_pred             HHHhcCCCCccCC
Q 026440          198 LLIRHGADVDVED  210 (238)
Q Consensus       198 ~Ll~~~~~~~~~~  210 (238)
                      +|+++|++++.+|
T Consensus        77 ~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   77 LLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHTTT-TTSS-
T ss_pred             HHHHcCCCCCCcC
Confidence            9999998888765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.84  E-value=3.2e-21  Score=159.51  Aligned_cols=220  Identities=27%  Similarity=0.321  Sum_probs=182.7

Q ss_pred             ccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHH
Q 026440            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA   88 (238)
Q Consensus         9 ~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a   88 (238)
                      .-++.|-.|+..|+-|.|..|+..+  .++.-+|+.|.+||.+|+-.||..+|+.|+......  -...|.++.|+|.+|
T Consensus       756 n~~t~LT~acaggh~e~vellv~rg--aniehrdkkgf~plImaatagh~tvV~~llk~ha~v--eaQsdrtkdt~lSla  831 (2131)
T KOG4369|consen  756 NIKTNLTSACAGGHREEVELLVVRG--ANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADV--EAQSDRTKDTMLSLA  831 (2131)
T ss_pred             cccccccccccCccHHHHHHHHHhc--ccccccccccchhhhhhcccCchHHHHHHHhhhhhh--hhhcccccCceEEEe
Confidence            3456788999999999999999987  578888999999999999999999999999876653  235677888999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC--CCCCCcHHHHHHhhCCHHHHHHH
Q 026440           89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK--DKVGCTALHRGASTGNSALCELL  166 (238)
Q Consensus        89 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~--~~~~~t~l~~a~~~~~~~~~~~L  166 (238)
                      |..|+.++++.||..|++-.-++...+||+..|...|..++++.|+..|..++.+  .+.|.+||..|..+|+......|
T Consensus       832 csggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~l  911 (2131)
T KOG4369|consen  832 CSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSL  911 (2131)
T ss_pred             cCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHH
Confidence            9999999999999999888878888889999999889999999999999887764  34577888888888888888888


Q ss_pred             HhcCCCCCcc-ccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHH
Q 026440          167 IEEGAEVDAT-DKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAA  232 (238)
Q Consensus       167 l~~~~~~~~~-~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~  232 (238)
                      ++.|-++|.. ..+.+|+|-.|+..|..|++.+|+.+.+++..+-..|.|||+-++.-|..++=+.|
T Consensus       912 l~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~l  978 (2131)
T KOG4369|consen  912 LQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLL  978 (2131)
T ss_pred             hcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhh
Confidence            8888887754 33567888888888888888888888888888888888888888777776554433

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.83  E-value=1.7e-21  Score=161.12  Aligned_cols=221  Identities=27%  Similarity=0.269  Sum_probs=118.2

Q ss_pred             hccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHH
Q 026440            8 TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS   87 (238)
Q Consensus         8 ~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~   87 (238)
                      +.+++.|..|+..|..+.|+.|+..+  .+-.-++....|||-.|...|..+++..|+..|...+ -....+.|.+||++
T Consensus       822 rtkdt~lSlacsggr~~vvelLl~~g--ankehrnvsDytPlsla~Sggy~~iI~~llS~GseIn-SrtgSklgisPLml  898 (2131)
T KOG4369|consen  822 RTKDTMLSLACSGGRTRVVELLLNAG--ANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEIN-SRTGSKLGISPLML  898 (2131)
T ss_pred             cccCceEEEecCCCcchHHHHHHHhh--ccccccchhhcCchhhhcCcchHHHHHHHhhcccccc-cccccccCcchhhh
Confidence            34444444444444444444444443  1222233334444444444444444444444443311 11122344455555


Q ss_pred             HHHcCCHHHHHHHHHcCCCCcccC-CCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHH
Q 026440           88 AASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL  166 (238)
Q Consensus        88 a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  166 (238)
                      |...|+....+.|++.|.+++..- ...+|+|..|+-.|+.+++.+|+.+.+.+..+.+.|.|||+-++..|.+++-.+|
T Consensus       899 atmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~l  978 (2131)
T KOG4369|consen  899 ATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLL  978 (2131)
T ss_pred             hhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhh
Confidence            555555555555555544444321 1233444444445555555555554444444455566666666666666666666


Q ss_pred             HhcCCC-----------------------------------CCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCC
Q 026440          167 IEEGAE-----------------------------------VDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDK  211 (238)
Q Consensus       167 l~~~~~-----------------------------------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  211 (238)
                      +..|+|                                   ++.++..|+|+|..|+..|....+..|++++++++..|+
T Consensus       979 i~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~qdn 1058 (2131)
T KOG4369|consen  979 IAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQQDN 1058 (2131)
T ss_pred             hhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCCccccchHHhhcccChhhhhc
Confidence            655544                                   344556677777777777777777777777777777777


Q ss_pred             CCCchhhccccccchHHHHH
Q 026440          212 EGYTVLGRASNDFRPILIDA  231 (238)
Q Consensus       212 ~g~tpl~~a~~~~~~~~~~~  231 (238)
                      ...++++.|.+.++.++++|
T Consensus      1059 r~~S~~maafRKgh~~iVk~ 1078 (2131)
T KOG4369|consen 1059 RTNSRTMAAFRKGHFAIVKK 1078 (2131)
T ss_pred             ccccccHHHHHhchhheecc
Confidence            77777777777777555443

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.83  E-value=3.7e-19  Score=118.42  Aligned_cols=121  Identities=49%  Similarity=0.741  Sum_probs=65.1

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhC
Q 026440           79 EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG  158 (238)
Q Consensus        79 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~  158 (238)
                      ..|.|||++|+..++.+++++|++.+...+..+..|.+|++.|+..++.+++++|++.+..++..+..+.+|+|.|+..+
T Consensus         5 ~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~   84 (126)
T cd00204           5 EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNG   84 (126)
T ss_pred             cCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence            34555555555555555555555555544444445555555555555555555555555444444444555555555555


Q ss_pred             CHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHH
Q 026440          159 NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL  199 (238)
Q Consensus       159 ~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  199 (238)
                      +.+++++|+.++.+.+..+..+.||++.|...++.+++++|
T Consensus        85 ~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          85 NLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             cHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            55555555555555555555555555555555555555544

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.83  E-value=3.8e-19  Score=118.37  Aligned_cols=123  Identities=43%  Similarity=0.642  Sum_probs=115.5

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHH
Q 026440          110 KNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVI  189 (238)
Q Consensus       110 ~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~  189 (238)
                      .+..|.|||++|+..++.+++++|++.+.+.+..+..|.+|++.|+..++.+++++|+..+.+++..+..+.||+|+|+.
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~   82 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR   82 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            34678999999999999999999999999988889999999999999999999999999999888888999999999999


Q ss_pred             hCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHH
Q 026440          190 CYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAA  232 (238)
Q Consensus       190 ~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~  232 (238)
                      .++.+++++|++++.+.+..+..|.||+++|...++.++++++
T Consensus        83 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          83 NGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             cCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            9999999999999999999999999999999999988777765

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.82  E-value=2.1e-20  Score=134.10  Aligned_cols=137  Identities=39%  Similarity=0.524  Sum_probs=116.9

Q ss_pred             ccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 026440           73 VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALH  152 (238)
Q Consensus        73 ~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~  152 (238)
                      ..+..|-.|.+|||+|++.|+..+++.|+..|+.++..+....||||.|+..|+.+++..|+++.+++|..+..|.||||
T Consensus        26 dln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplh  105 (448)
T KOG0195|consen   26 DLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLH  105 (448)
T ss_pred             ccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchh
Confidence            36777888999999999999999999999999999988888889999999999999999999999999999999999999


Q ss_pred             HHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccC
Q 026440          153 RGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVE  209 (238)
Q Consensus       153 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~  209 (238)
                      +||..|...+++-|+..|+.++..++.|.||+..|.-.-..-+.+.--++|-+++..
T Consensus       106 yacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~nri  162 (448)
T KOG0195|consen  106 YACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPNRI  162 (448)
T ss_pred             hhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCCcc
Confidence            999999999999999999999999999999999875432222333333457666644

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.81  E-value=1.9e-19  Score=129.28  Aligned_cols=158  Identities=35%  Similarity=0.452  Sum_probs=130.1

Q ss_pred             HHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcC
Q 026440           13 DLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIG   92 (238)
Q Consensus        13 ~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~   92 (238)
                      .++.-++.|+.-.|+..++.. +.+++..|..|.+|||.||+.|+..+++.|+..|+.   ++..+....||||+|+..|
T Consensus         3 dif~wcregna~qvrlwld~t-ehdln~gddhgfsplhwaakegh~aivemll~rgar---vn~tnmgddtplhlaaahg   78 (448)
T KOG0195|consen    3 DIFGWCREGNAFQVRLWLDDT-EHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR---VNSTNMGDDTPLHLAAAHG   78 (448)
T ss_pred             hhhhhhhcCCeEEEEEEecCc-ccccccccccCcchhhhhhhcccHHHHHHHHhcccc---cccccCCCCcchhhhhhcc
Confidence            456667777777777777666 678899999999999999999999999999988887   6777778889999999999


Q ss_pred             CHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCC
Q 026440           93 NVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE  172 (238)
Q Consensus        93 ~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~  172 (238)
                      +-++++.|++..++++..+..|.|||||||..|.-.+.+-|+..|+.++..++.|.||+..|.-.-...+.+..-++|-.
T Consensus        79 hrdivqkll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~  158 (448)
T KOG0195|consen   79 HRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQS  158 (448)
T ss_pred             cHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999876432222222222234555


Q ss_pred             CC
Q 026440          173 VD  174 (238)
Q Consensus       173 ~~  174 (238)
                      ++
T Consensus       159 ~n  160 (448)
T KOG0195|consen  159 PN  160 (448)
T ss_pred             CC
Confidence            54

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.81  E-value=6.4e-19  Score=110.11  Aligned_cols=88  Identities=45%  Similarity=0.739  Sum_probs=48.5

Q ss_pred             HHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHH
Q 026440           49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK  128 (238)
Q Consensus        49 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~  128 (238)
                      ||+||+.|+.+++++|++.+.+   ++.    |.+|||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~---~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGAD---INL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTST---TTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCC---CCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHH
Confidence            4556666666666666654432   111    555666666666666666666665555555555556666666655566


Q ss_pred             HHHHHHHcCCCCCCC
Q 026440          129 IVELLISRGAKINSK  143 (238)
Q Consensus       129 ~~~~l~~~~~~~~~~  143 (238)
                      ++++|+++|++++.+
T Consensus        74 ~~~~Ll~~g~~~~~~   88 (89)
T PF12796_consen   74 IVKLLLEHGADVNIR   88 (89)
T ss_dssp             HHHHHHHTTT-TTSS
T ss_pred             HHHHHHHcCCCCCCc
Confidence            666666555555543

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.74  E-value=1.2e-17  Score=99.37  Aligned_cols=106  Identities=25%  Similarity=0.352  Sum_probs=90.9

Q ss_pred             cChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHH
Q 026440           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAA   89 (238)
Q Consensus        10 ~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~   89 (238)
                      .+.++.+++++|.++.|+.....+  .+++.. ..|++|||||+..|..+++++|+..|++   ++.+|+.|.|||..|+
T Consensus         2 ~d~~~~W~vkNG~~DeVk~~v~~g--~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~---i~~kDKygITPLLsAv   75 (117)
T KOG4214|consen    2 GDMSVAWNVKNGEIDEVKQSVNEG--LNVNEI-YGGRTPLHYAADYGQLSILEFLISIGAN---IQDKDKYGITPLLSAV   75 (117)
T ss_pred             cchhHhhhhccCcHHHHHHHHHcc--ccHHHH-hCCcccchHhhhcchHHHHHHHHHhccc---cCCccccCCcHHHHHH
Confidence            356889999999999999998887  233332 3789999999999999999999999888   8888999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCcccCCCCchHHHHH
Q 026440           90 SIGNVTIVEMLLSKGADVNLKNDGGRTALHYA  121 (238)
Q Consensus        90 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a  121 (238)
                      ..|+..++++|+++|++-......|.+.+..+
T Consensus        76 wEGH~~cVklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   76 WEGHRDCVKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHhhHHHHHHHHHcCcccceeCCCchhHHhhc
Confidence            99999999999999999888777787666544

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.70  E-value=4.9e-15  Score=108.85  Aligned_cols=127  Identities=41%  Similarity=0.579  Sum_probs=84.7

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCC-----HHHHHHHHHcCC---CCCCCCCCCC
Q 026440           77 VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGW-----LKIVELLISRGA---KINSKDKVGC  148 (238)
Q Consensus        77 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~-----~~~~~~l~~~~~---~~~~~~~~~~  148 (238)
                      .+..+.++++.++..+...++++++..|++++.++..|.||++.|+..++     .++++.|++.|.   ..+..+..|.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~  148 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGN  148 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCC
Confidence            34456667777776666666667777776666666667777777777666     666666666666   3444466666


Q ss_pred             cHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcC
Q 026440          149 TALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHG  203 (238)
Q Consensus       149 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  203 (238)
                      ||+|+|+..|+.++++.|++.|++++..+..|.|+++.|+..+..++++.+++.+
T Consensus       149 tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         149 TPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             chhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            6666666666666666666666666666666666666666666666666666654

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.70  E-value=3.3e-15  Score=109.77  Aligned_cols=126  Identities=38%  Similarity=0.487  Sum_probs=113.7

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCC-----HHHHHHHHhcCC---CCCccccCC
Q 026440          109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN-----SALCELLIEEGA---EVDATDKAG  180 (238)
Q Consensus       109 ~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~-----~~~~~~Ll~~~~---~~~~~~~~~  180 (238)
                      ..+..+.++++.++..+....+++++..+.+++..+..|.||+|+|+..++     .++++.|++.|+   ..+.++..|
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g  147 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDG  147 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCC
Confidence            345567889999999999999999999999999999999999999999999     999999999999   566669999


Q ss_pred             CcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHHH
Q 026440          181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKA  234 (238)
Q Consensus       181 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~  234 (238)
                      .||+|+|+..|+.++++.|++.|++++..+..|.|+++.|...++.++++.+..
T Consensus       148 ~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~  201 (235)
T COG0666         148 NTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLD  201 (235)
T ss_pred             CchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999888887765

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.69  E-value=2.3e-16  Score=93.87  Aligned_cols=101  Identities=29%  Similarity=0.452  Sum_probs=52.6

Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHH
Q 026440          119 HYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALL  198 (238)
Q Consensus       119 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  198 (238)
                      .+++++|.++-++..+..|.++|.. ..+++|+|+|+.+|..+++++|+..|++++-+|+.|-|||..|+..|+.++|++
T Consensus         7 ~W~vkNG~~DeVk~~v~~g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVkl   85 (117)
T KOG4214|consen    7 AWNVKNGEIDEVKQSVNEGLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKL   85 (117)
T ss_pred             hhhhccCcHHHHHHHHHccccHHHH-hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHH
Confidence            3444455555555555544444322 234555555555555555555555555555555555555555555555555555


Q ss_pred             HHhcCCCCccCCCCCCchhhcc
Q 026440          199 LIRHGADVDVEDKEGYTVLGRA  220 (238)
Q Consensus       199 Ll~~~~~~~~~~~~g~tpl~~a  220 (238)
                      |+++|++..++--+|.+.+..+
T Consensus        86 LL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   86 LLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHcCcccceeCCCchhHHhhc
Confidence            5555555555544555444443

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.64  E-value=2.7e-16  Score=88.49  Aligned_cols=55  Identities=47%  Similarity=0.623  Sum_probs=30.6

Q ss_pred             HHhcC-CCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhcc
Q 026440          166 LIEEG-AEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRA  220 (238)
Q Consensus       166 Ll~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a  220 (238)
                      |++++ ++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|+||+++|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45666 78888888899999999999999999999988999999999999999876

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.61  E-value=8.8e-15  Score=122.35  Aligned_cols=104  Identities=32%  Similarity=0.348  Sum_probs=79.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHH
Q 026440          117 ALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVA  196 (238)
Q Consensus       117 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  196 (238)
                      .|+.|+..|+.+.++.|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv  164 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVV  164 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHH
Confidence            46677777778888888888877777777778888888888888888888888888877777788888888888888888


Q ss_pred             HHHHhc-------CCCCccCCCCCCchhhcc
Q 026440          197 LLLIRH-------GADVDVEDKEGYTVLGRA  220 (238)
Q Consensus       197 ~~Ll~~-------~~~~~~~~~~g~tpl~~a  220 (238)
                      ++|+++       |++.+..+..|.+|+..+
T Consensus       165 ~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        165 QLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            888777       777777777676665544

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=1.5e-14  Score=112.07  Aligned_cols=118  Identities=31%  Similarity=0.448  Sum_probs=96.6

Q ss_pred             HHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcC
Q 026440           13 DLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIG   92 (238)
Q Consensus        13 ~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~   92 (238)
                      .|..|+..|.+|+|..++...  .+.-..+.+|.|+||.|+..||.++|++|++.|.+   ++..|.+||||||.|++++
T Consensus       553 LLLDaaLeGEldlVq~~i~ev--~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~gan---VNa~DSdGWTPLHCAASCN  627 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEV--TDPSQPNDEGITALHNAICAGHYEIVKFLIEFGAN---VNAADSDGWTPLHCAASCN  627 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhh--cCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCc---ccCccCCCCchhhhhhhcC
Confidence            477899999999999998776  45666678899999999999999999999998888   8888999999999999999


Q ss_pred             CHHHHHHHHHcCCCCcccC-CCCchHHHHHH--HcCCHHHHHHHHH
Q 026440           93 NVTIVEMLLSKGADVNLKN-DGGRTALHYAA--SKGWLKIVELLIS  135 (238)
Q Consensus        93 ~~~~~~~Ll~~~~~~~~~~-~~~~~~l~~a~--~~~~~~~~~~l~~  135 (238)
                      +..+++.|++.|+.+-... .++.|+...+-  ..|...|.++|..
T Consensus       628 nv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  628 NVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             chHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            9999999999987654432 35667777653  3467778887764

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.55  E-value=2.2e-14  Score=80.29  Aligned_cols=52  Identities=38%  Similarity=0.583  Sum_probs=24.1

Q ss_pred             CcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHH
Q 026440          148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL  199 (238)
Q Consensus       148 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  199 (238)
                      .||+|.|+..|+.+++++|+++|.+++.+|.+|.||||+|+..|+.+++++|
T Consensus         2 ~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    2 RTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             ChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            4455555555555555555555555555555555555555555555555544

...

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.54  E-value=1.2e-14  Score=81.36  Aligned_cols=53  Identities=34%  Similarity=0.447  Sum_probs=44.6

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHH
Q 026440          180 GQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAA  232 (238)
Q Consensus       180 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~  232 (238)
                      |+||+|+|+..|+.+++++|+++|++++.+|.+|.||+|+|+..++.+++++|
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            68999999999999999999999999999999999999999999998888776

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.53  E-value=1.6e-14  Score=81.27  Aligned_cols=55  Identities=47%  Similarity=0.734  Sum_probs=28.5

Q ss_pred             HHHcC-CCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHH
Q 026440          133 LISRG-AKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA  187 (238)
Q Consensus       133 l~~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a  187 (238)
                      |+++| .+++..|..|.||||+|+..|+.+++++|++.|++++.+|..|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45555 77777888888888888888888888888888888888888888888876

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.53  E-value=1.1e-13  Score=115.87  Aligned_cols=85  Identities=32%  Similarity=0.457  Sum_probs=44.6

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHH
Q 026440           85 IHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCE  164 (238)
Q Consensus        85 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  164 (238)
                      |+.|+..|+.+.++.|++.|++++.++..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.++++
T Consensus        86 L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~  165 (664)
T PTZ00322         86 LCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQ  165 (664)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHH
Confidence            44445555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHhc
Q 026440          165 LLIEE  169 (238)
Q Consensus       165 ~Ll~~  169 (238)
                      +|+.+
T Consensus       166 ~Ll~~  170 (664)
T PTZ00322        166 LLSRH  170 (664)
T ss_pred             HHHhC
Confidence            55544

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.53  E-value=1.9e-13  Score=98.47  Aligned_cols=123  Identities=27%  Similarity=0.344  Sum_probs=101.5

Q ss_pred             cChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHH
Q 026440           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAA   89 (238)
Q Consensus        10 ~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~   89 (238)
                      ...+|..++..|+.+.+..|++.-  ...+..|.+|.|+|..|+..|+.++++.|++.|.+.+.  .++..+.||||+|+
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~v--r~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~--~qhg~~YTpLmFAA   87 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTV--RQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVND--KQHGTLYTPLMFAA   87 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHh--hhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCc--ccccccccHHHHHH
Confidence            345788888899999888888775  46788888899999888999999999999988887542  35577888999998


Q ss_pred             HcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHc
Q 026440           90 SIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR  136 (238)
Q Consensus        90 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~  136 (238)
                      -+|+.++.+.|++.|+.+...+.-|.|+-..|+.-|+.+++..+-.+
T Consensus        88 LSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   88 LSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             HcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            88999999889998888888888888888888888888888776543

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.52  E-value=2.9e-13  Score=97.56  Aligned_cols=121  Identities=32%  Similarity=0.371  Sum_probs=109.6

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc-cCCCCchHHHHHHH
Q 026440           45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNL-KNDGGRTALHYAAS  123 (238)
Q Consensus        45 ~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~-~~~~~~~~l~~a~~  123 (238)
                      -.+||..++..|..+-+.-|+..-..   ++..|..|.|||.-|+..|+.++++.|++.|+++|. ++..++|||++|+-
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~---vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAAL   88 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQ---VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAAL   88 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhh---hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHH
Confidence            35789999999999999888865333   788999999999999999999999999999999987 45689999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHh
Q 026440          124 KGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIE  168 (238)
Q Consensus       124 ~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  168 (238)
                      .|+.++.++|++.|+.....+.-|+|+-.+|+..|+.++|..+-.
T Consensus        89 SGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   89 SGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             cCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            999999999999999999999999999999999999998877654

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.43  E-value=9.1e-13  Score=102.34  Aligned_cols=114  Identities=33%  Similarity=0.395  Sum_probs=90.9

Q ss_pred             HHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHH
Q 026440           88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLI  167 (238)
Q Consensus        88 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll  167 (238)
                      |+..|.+++++.++..--++...+..|.|+||.|+..|+.+++++|+++|+++|..|..|+||||+|+.+++..+++.|.
T Consensus       557 aaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLV  636 (752)
T KOG0515|consen  557 AALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLV  636 (752)
T ss_pred             hhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHH
Confidence            55567888888888877777777888889999999899999999999999999988888999999999999999999898


Q ss_pred             hcCCCCCcc-ccCCCcHHHHHH--HhCCHHHHHHHHh
Q 026440          168 EEGAEVDAT-DKAGQTPLMNAV--ICYNKEVALLLIR  201 (238)
Q Consensus       168 ~~~~~~~~~-~~~~~t~l~~a~--~~~~~~~~~~Ll~  201 (238)
                      +.|+.+-.. -+++.|+...+-  +.|...+.++|..
T Consensus       637 e~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  637 ESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             hccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            888765432 345677777664  3466777887764

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.11  E-value=2.9e-11  Score=98.86  Aligned_cols=80  Identities=35%  Similarity=0.472  Sum_probs=40.3

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-CCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHH
Q 026440          110 KNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV-GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV  188 (238)
Q Consensus       110 ~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~-~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~  188 (238)
                      .|..|.+++|++...+..++++||+++|+++...|.+ |+||||-|+.+|+++|+..|+.+|.....+|.+|..||...+
T Consensus        48 kD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~~~  127 (1267)
T KOG0783|consen   48 KDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQFLS  127 (1267)
T ss_pred             HHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHHHh
Confidence            3444555555555555555555555555555444443 445555555555555555555555555555555555554444


Q ss_pred             H
Q 026440          189 I  189 (238)
Q Consensus       189 ~  189 (238)
                      +
T Consensus       128 r  128 (1267)
T KOG0783|consen  128 R  128 (1267)
T ss_pred             h
Confidence            3

>PF13606 Ank_3: Ankyrin repeat

Probab=99.08  E-value=2.5e-10  Score=54.93  Aligned_cols=29  Identities=45%  Similarity=0.582  Sum_probs=24.8

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhcCCCCc
Q 026440          179 AGQTPLMNAVICYNKEVALLLIRHGADVD  207 (238)
Q Consensus       179 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~  207 (238)
                      +|+||||+|+..|+.+++++|+++|+|++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            47888888888888888888888888876

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.05  E-value=4.4e-10  Score=55.70  Aligned_cols=33  Identities=36%  Similarity=0.624  Sum_probs=28.7

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCC
Q 026440          179 AGQTPLMNAVICYNKEVALLLIRHGADVDVEDK  211 (238)
Q Consensus       179 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  211 (238)
                      +|.||||+|+..++.+++++|+++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            478999999999999999999999999888764

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=99.03  E-value=1.3e-09  Score=86.00  Aligned_cols=123  Identities=26%  Similarity=0.393  Sum_probs=87.3

Q ss_pred             ChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHH
Q 026440           11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS   90 (238)
Q Consensus        11 ~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~   90 (238)
                      .+.|..|+..+++-.+...-..+  -++..++.+..+.||+|+..|+-|+|+|+++++.. ..++..+.+|.|+||-|+.
T Consensus       867 seeil~av~~~D~~klqE~h~~g--g~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~-elld~~de~get~lhkaa~  943 (1004)
T KOG0782|consen  867 SEEILRAVLSSDLMKLQETHLNG--GSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPS-ELLDMADETGETALHKAAC  943 (1004)
T ss_pred             cHHHHHHHHhccHHHHHHHHhcC--CceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCH-HHHHHHhhhhhHHHHHHHH
Confidence            34577777777766665555444  35666677778888888888888888888877643 3355566777777777777


Q ss_pred             cCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHc
Q 026440           91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR  136 (238)
Q Consensus        91 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~  136 (238)
                      .++-.+.++|++.|+.+...|..|.||-.-|-+.|..++.-||-..
T Consensus       944 ~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  944 QRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             hcchHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            7777777777777777777777777777777777777777776543

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.03  E-value=5.3e-09  Score=81.18  Aligned_cols=86  Identities=34%  Similarity=0.344  Sum_probs=78.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-CCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHH
Q 026440          116 TALHYAASKGWLKIVELLISRGAKINSKDKV-GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE  194 (238)
Q Consensus       116 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~-~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  194 (238)
                      .-||.+++.|+.+..-.|+..|++.|..++. |.||||.|++.|+..-+++|.-+|+|+...|.+|.||+.+|-..|+-+
T Consensus       135 rQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~  214 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHE  214 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchH
Confidence            4588889999999999999999999987765 889999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHh
Q 026440          195 VALLLIR  201 (238)
Q Consensus       195 ~~~~Ll~  201 (238)
                      +.+-|++
T Consensus       215 laeRl~e  221 (669)
T KOG0818|consen  215 LAERLVE  221 (669)
T ss_pred             HHHHHHH
Confidence            8777766

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.99  E-value=2.4e-09  Score=83.06  Aligned_cols=85  Identities=29%  Similarity=0.287  Sum_probs=78.0

Q ss_pred             HHHHHHhhCCHHHHHHHHhcCCCCCcccc-CCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHH
Q 026440          150 ALHRGASTGNSALCELLIEEGAEVDATDK-AGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPIL  228 (238)
Q Consensus       150 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~  228 (238)
                      -||.+++.++.+..--|+..|+++|..+. .|.||||.|++.|+..-+++|.-+|+|+...|.+|+||+.+|-..||-++
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            38889999999999999999999998765 48999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHH
Q 026440          229 IDAAKA  234 (238)
Q Consensus       229 ~~~~~~  234 (238)
                      .+-+-+
T Consensus       216 aeRl~e  221 (669)
T KOG0818|consen  216 AERLVE  221 (669)
T ss_pred             HHHHHH
Confidence            776544

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.99  E-value=3.3e-10  Score=92.94  Aligned_cols=83  Identities=33%  Similarity=0.436  Sum_probs=51.9

Q ss_pred             cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCC-CCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 026440           74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND-GGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALH  152 (238)
Q Consensus        74 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~  152 (238)
                      .+..|..|+++||+|++.+...+++||+++|+++..+|. .|+||||-|+.+|+++++-.|+.+|..+...|..|.+||.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            344555666666666666666666666666666666554 4666666666666666666666666666666666666666


Q ss_pred             HHHh
Q 026440          153 RGAS  156 (238)
Q Consensus       153 ~a~~  156 (238)
                      ..++
T Consensus       125 ~~~r  128 (1267)
T KOG0783|consen  125 FLSR  128 (1267)
T ss_pred             HHhh
Confidence            5444

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.91  E-value=5.7e-09  Score=82.50  Aligned_cols=112  Identities=26%  Similarity=0.348  Sum_probs=94.8

Q ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCC--CCccccCCCcHHHHHHHhCCHHHHHHHH
Q 026440          123 SKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE--VDATDKAGQTPLMNAVICYNKEVALLLI  200 (238)
Q Consensus       123 ~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~--~~~~~~~~~t~l~~a~~~~~~~~~~~Ll  200 (238)
                      ..+..-.+.-...+|.++-..+....+.||+|+..|+-++++|++++|..  +++.+..|.|+||.|+..++-.++++|+
T Consensus       875 ~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lv  954 (1004)
T KOG0782|consen  875 LSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLV  954 (1004)
T ss_pred             HhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHH
Confidence            33443333444456777777888888999999999999999999999764  5667888999999999999999999999


Q ss_pred             hcCCCCccCCCCCCchhhccccccchHHHHHHHH
Q 026440          201 RHGADVDVEDKEGYTVLGRASNDFRPILIDAAKA  234 (238)
Q Consensus       201 ~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~  234 (238)
                      +.|++.-..|..|.||-..|-..+.+++.-|++.
T Consensus       955 dagasl~ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  955 DAGASLRKTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             hcchhheecccCCCChHHHHHhcCCchHHHHHhh
Confidence            9999999999999999999999999999988874

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.90  E-value=2.7e-09  Score=82.36  Aligned_cols=92  Identities=29%  Similarity=0.367  Sum_probs=82.1

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhc-CCCCCccccCCCcHHHHHHHhC
Q 026440          113 GGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEE-GAEVDATDKAGQTPLMNAVICY  191 (238)
Q Consensus       113 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~  191 (238)
                      .+..++.+|+..|....++.+.-.|.+++.+|...+|+||.|+..|+.+++++|++. +++++.+|.+|+|||.-|...+
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~  584 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFK  584 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcC
Confidence            455778899999999999999999999999999999999999999999999999987 8899999999999999999999


Q ss_pred             CHHHHHHHHhcCC
Q 026440          192 NKEVALLLIRHGA  204 (238)
Q Consensus       192 ~~~~~~~Ll~~~~  204 (238)
                      +.+++++|-+...
T Consensus       585 h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  585 HKEVVKLLEEAQY  597 (622)
T ss_pred             cHHHHHHHHHHhc
Confidence            9999999987643

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.87  E-value=2.9e-09  Score=82.18  Aligned_cols=89  Identities=19%  Similarity=0.177  Sum_probs=83.3

Q ss_pred             CcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhc-CCCCccCCCCCCchhhccccccch
Q 026440          148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRH-GADVDVEDKEGYTVLGRASNDFRP  226 (238)
Q Consensus       148 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~g~tpl~~a~~~~~~  226 (238)
                      ...+.+|+..|....++-+.-.|.|++.+|.+.+|+||.|+..|+.+++++|++. +.+++.+|..|.|||+-|..-+|.
T Consensus       507 ~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~  586 (622)
T KOG0506|consen  507 VINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHK  586 (622)
T ss_pred             hhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcH
Confidence            4578899999999999999989999999999999999999999999999999996 899999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 026440          227 ILIDAAKAML  236 (238)
Q Consensus       227 ~~~~~~~~~~  236 (238)
                      +++++|++..
T Consensus       587 ~v~k~L~~~~  596 (622)
T KOG0506|consen  587 EVVKLLEEAQ  596 (622)
T ss_pred             HHHHHHHHHh
Confidence            9999988743

>PF13606 Ank_3: Ankyrin repeat

Probab=98.85  E-value=5.6e-09  Score=50.17  Aligned_cols=27  Identities=59%  Similarity=0.861  Sum_probs=12.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 026440           81 GWAPIHSAASIGNVTIVEMLLSKGADV  107 (238)
Q Consensus        81 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~  107 (238)
                      |+||||+|++.|+.+++++|+++|+++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            344444444444444444444444433

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.74  E-value=2.7e-08  Score=49.21  Aligned_cols=28  Identities=50%  Similarity=0.802  Sum_probs=12.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCc
Q 026440           81 GWAPIHSAASIGNVTIVEMLLSKGADVN  108 (238)
Q Consensus        81 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~  108 (238)
                      |.||||+|+..++.+++++|+++|++++
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~   29 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADIN   29 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence            3444444444444444444444444443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.73  E-value=9.1e-08  Score=79.24  Aligned_cols=129  Identities=26%  Similarity=0.293  Sum_probs=105.1

Q ss_pred             chhhhccChHHHHHHHcCChHHHHHHHHHHhh--hhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCC
Q 026440            4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLL--KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (238)
Q Consensus         4 ~~~~~~~~~~l~~a~~~g~~~~v~~l~~~~~~--~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~   81 (238)
                      +.....++..+..|+..|+...|+..++....  -+++-.|.-|+++|+.|+.+.+.|+.++|++.+..   .       
T Consensus        19 ~~~l~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~---~-------   88 (822)
T KOG3609|consen   19 DADLNEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE---E-------   88 (822)
T ss_pred             ccccchhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccc---c-------
Confidence            44566777889999999999999999987644  45677888999999999999999999999975422   1       


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCc----------ccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 026440           82 WAPIHSAASIGNVTIVEMLLSKGADVN----------LKNDGGRTALHYAASKGWLKIVELLISRGAKINS  142 (238)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~----------~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~  142 (238)
                      ..+|..|++.|..++++.++.+.....          ..-..+.||+..|+..++.|+++.|+.+|..+..
T Consensus        89 gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   89 GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            457889999999999999998732221          1112477999999999999999999999988654

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.69  E-value=7.4e-08  Score=76.35  Aligned_cols=105  Identities=26%  Similarity=0.366  Sum_probs=81.1

Q ss_pred             hcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccc-cccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCc
Q 026440           37 SLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVN-AVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR  115 (238)
Q Consensus        37 ~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~  115 (238)
                      ++......--.-|.-|....+...+-+|+.+|....... ..+.+|.|+||+|++.|+..+.+.|+=+|+++..+|..|.
T Consensus       616 Pl~~te~~lgqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~  695 (749)
T KOG0705|consen  616 PLPCTEEPLGQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGR  695 (749)
T ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCc
Confidence            333333333344667777778888888888877655333 2345678999999999999999999988999999999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCC
Q 026440          116 TALHYAASKGWLKIVELLISRGAKIN  141 (238)
Q Consensus       116 ~~l~~a~~~~~~~~~~~l~~~~~~~~  141 (238)
                      |+|.||-+.|..+|+..|+.+|+.-.
T Consensus       696 t~l~yar~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  696 TALFYARQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             hhhhhHhhcccHHHHHHHHHcCCCcc
Confidence            99999999999999999999988643

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.67  E-value=6.6e-08  Score=75.93  Aligned_cols=87  Identities=26%  Similarity=0.390  Sum_probs=59.8

Q ss_pred             hHHHHHHHcCCHHHHHHHH--HcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCH
Q 026440          116 TALHYAASKGWLKIVELLI--SRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNK  193 (238)
Q Consensus       116 ~~l~~a~~~~~~~~~~~l~--~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~  193 (238)
                      .|+|.+......+-+...+  +.+..++..|..|.||||+|+..|+...++.|+..|+++..++..|++|||-|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            3477776665544443322  22444666777777788888888888777877777777777777788888877777777


Q ss_pred             HHHHHHHhc
Q 026440          194 EVALLLIRH  202 (238)
Q Consensus       194 ~~~~~Ll~~  202 (238)
                      +++..++.+
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            777766654

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.63  E-value=2.8e-07  Score=76.46  Aligned_cols=86  Identities=24%  Similarity=0.258  Sum_probs=59.4

Q ss_pred             chHHHHHHHcCCHHHHHHHHhhccc-ccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHc
Q 026440           46 RTLLHVAASCGHPEVVEILLSVDES-ANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASK  124 (238)
Q Consensus        46 ~t~L~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~  124 (238)
                      .--.-.|++.|+.-.|+..++.... ...++..|.-|++.|+.|+.+.+.++.++|++.+...       ..+|.+|+..
T Consensus        26 e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~   98 (822)
T KOG3609|consen   26 EKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAV   98 (822)
T ss_pred             hHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHH
Confidence            3446678888888777777654322 2235677777888888888888888888888775433       2467777777


Q ss_pred             CCHHHHHHHHHcCC
Q 026440          125 GWLKIVELLISRGA  138 (238)
Q Consensus       125 ~~~~~~~~l~~~~~  138 (238)
                      |..+.++.++.+..
T Consensus        99 ~~v~~VE~ll~~~~  112 (822)
T KOG3609|consen   99 GSVPLVELLLVHFV  112 (822)
T ss_pred             HHHHHHHHHHhccc
Confidence            88888887776643

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.63  E-value=1.5e-07  Score=73.95  Aligned_cols=89  Identities=35%  Similarity=0.499  Sum_probs=74.4

Q ss_pred             hHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHc
Q 026440           12 KDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASI   91 (238)
Q Consensus        12 ~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~   91 (238)
                      ..+|+++...+.+-+...+.......+..+|..|.||||.|+..|+.+.++.|+..++.   ...++..|++|||-|+..
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad---v~~kN~~gWs~L~EAv~~   98 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD---VSIKNNEGWSPLHEAVST   98 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC---ccccccccccHHHHHHHc
Confidence            35888888888888877665544556778888999999999999999999999988877   677788999999999999


Q ss_pred             CCHHHHHHHHHc
Q 026440           92 GNVTIVEMLLSK  103 (238)
Q Consensus        92 ~~~~~~~~Ll~~  103 (238)
                      |+.+++..++.+
T Consensus        99 g~~q~i~~vlr~  110 (560)
T KOG0522|consen   99 GNEQIITEVLRH  110 (560)
T ss_pred             CCHHHHHHHHHH
Confidence            998888887765

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.61  E-value=2.2e-07  Score=73.74  Aligned_cols=91  Identities=29%  Similarity=0.443  Sum_probs=77.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcc----cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCC
Q 026440           84 PIHSAASIGNVTIVEMLLSKGADVNL----KNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN  159 (238)
Q Consensus        84 ~l~~a~~~~~~~~~~~Ll~~~~~~~~----~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~  159 (238)
                      -|..|........+-.|+.+|.....    .+..|.|+||.|++.|+..+.++|+=+|+|+...|..|.|+|.+|-+.|.
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence            46677777788888899998865432    24467899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCC
Q 026440          160 SALCELLIEEGAEVD  174 (238)
Q Consensus       160 ~~~~~~Ll~~~~~~~  174 (238)
                      .+|+..|+++|+..+
T Consensus       707 qec~d~llq~gcp~e  721 (749)
T KOG0705|consen  707 QECIDVLLQYGCPDE  721 (749)
T ss_pred             HHHHHHHHHcCCCcc
Confidence            999999999988654

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.54  E-value=5.1e-07  Score=68.32  Aligned_cols=71  Identities=28%  Similarity=0.294  Sum_probs=47.9

Q ss_pred             HHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHH
Q 026440           49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAA  122 (238)
Q Consensus        49 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~  122 (238)
                      |++||+.|..+.+++|++.|.+   +|..|.+..+||.+|+-.||.+++++|+++|+.-..-..+|..+++-|.
T Consensus        40 lceacR~GD~d~v~~LVetgvn---VN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~YgaL  110 (516)
T KOG0511|consen   40 LCEACRAGDVDRVRYLVETGVN---VNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGAL  110 (516)
T ss_pred             HHHHhhcccHHHHHHHHHhCCC---cchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhhh
Confidence            6777777777777777776666   5666667777777777777777777777777654444445655555544

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.47  E-value=3.3e-07  Score=62.73  Aligned_cols=72  Identities=24%  Similarity=0.243  Sum_probs=59.0

Q ss_pred             CCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcC-CCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccC
Q 026440          138 AKINSKDKVGCTALHRGASTGNSALCELLIEEG-AEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVE  209 (238)
Q Consensus       138 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~  209 (238)
                      .++|..|..|+|+++.|+..|+.+.+.||+.+| +++...+..|.+++.+|-+.|..+++..|.+.-.+-...
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p   75 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHP   75 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCc
Confidence            467788888888888888888888888888888 788888888888888888888888888888874443333

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.37  E-value=1.7e-06  Score=65.54  Aligned_cols=77  Identities=26%  Similarity=0.327  Sum_probs=60.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCC
Q 026440           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN  159 (238)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~  159 (238)
                      .--|..||+.|..+.+++|++.|.++|.+|....+||++|+-.|+..++++|+++|+-.+.....|. -.|+++.+.+
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~-RC~YgaLnd~  113 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGD-RCHYGALNDR  113 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcc-hhhhhhhhHH
Confidence            3457789999999999999999999999999999999999999999999999999887654333333 3455554433

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.31  E-value=6.7e-07  Score=75.77  Aligned_cols=81  Identities=37%  Similarity=0.559  Sum_probs=66.5

Q ss_pred             CCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccch
Q 026440          147 GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRP  226 (238)
Q Consensus       147 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~  226 (238)
                      |.+++|.|+..+...++++|++.|++++..+..|++|+|.+...|+......++++|++++..+..|.+|+++|....+.
T Consensus       656 ~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~~  735 (785)
T KOG0521|consen  656 GCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAANA  735 (785)
T ss_pred             ccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhccc
Confidence            56788888888888888888888888888888888888888888888888888888888888888888888888655443


Q ss_pred             H
Q 026440          227 I  227 (238)
Q Consensus       227 ~  227 (238)
                      +
T Consensus       736 d  736 (785)
T KOG0521|consen  736 D  736 (785)
T ss_pred             c
Confidence            3

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.26  E-value=3.8e-06  Score=57.66  Aligned_cols=65  Identities=29%  Similarity=0.397  Sum_probs=36.9

Q ss_pred             cccccCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCC
Q 026440           74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGA  138 (238)
Q Consensus        74 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~  138 (238)
                      ++.+|.+|||+++.|...|+.+.+.||+.+| +.+...|..+.+.+.+|-..|..++++.|.+...
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            4455555555555555555555555555555 4455555555555555555555555555555533

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.19  E-value=3.3e-06  Score=71.75  Aligned_cols=87  Identities=37%  Similarity=0.539  Sum_probs=77.7

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCC
Q 026440          113 GGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYN  192 (238)
Q Consensus       113 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~  192 (238)
                      .|.+++|.|+..+.....++|+++|.+++..|..|.+|+|.+...|+...+..++++|++.+..+..|.+|+.+|....+
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~  734 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAAN  734 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhcc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999987766


Q ss_pred             HHHHHHH
Q 026440          193 KEVALLL  199 (238)
Q Consensus       193 ~~~~~~L  199 (238)
                      .+++-++
T Consensus       735 ~d~~~l~  741 (785)
T KOG0521|consen  735 ADIVLLL  741 (785)
T ss_pred             ccHHHHH
Confidence            5555444

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.13  E-value=3.2e-06  Score=71.86  Aligned_cols=122  Identities=23%  Similarity=0.167  Sum_probs=80.6

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHhhCCHHHHHHH-HhcCCCCCccccCCCcHHHHHH
Q 026440          111 NDGGRTALHYAASKGWLKIVELLISR-GAKINSKDKVGCTALHRGASTGNSALCELL-IEEGAEVDATDKAGQTPLMNAV  188 (238)
Q Consensus       111 ~~~~~~~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L-l~~~~~~~~~~~~~~t~l~~a~  188 (238)
                      ...|.+.+|.+...+..-+++.+++. |......+..+...+|.++. +..+.+-++ .-.|..++.+|..|+||||+|+
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~-lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa  649 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAA-LGYEWAFLPISADGVAIDIRDRNGWTPLHWAA  649 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhh-cCCceeEEEEeecccccccccCCCCcccchHh
Confidence            34577788888777777777777765 54445556666666777443 334443333 3347777778888888888888


Q ss_pred             HhCCHHHHHHHHhcCCCCccCC------CCCCchhhccccccchHHHHHHH
Q 026440          189 ICYNKEVALLLIRHGADVDVED------KEGYTVLGRASNDFRPILIDAAK  233 (238)
Q Consensus       189 ~~~~~~~~~~Ll~~~~~~~~~~------~~g~tpl~~a~~~~~~~~~~~~~  233 (238)
                      ..|+..++..|.+.|++....-      -.|.|+...|-.+++..+--++.
T Consensus       650 ~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~ls  700 (975)
T KOG0520|consen  650 FRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLS  700 (975)
T ss_pred             hcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHh
Confidence            8888888888887666544322      25777777777777766665554

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.11  E-value=9.7e-06  Score=69.07  Aligned_cols=130  Identities=26%  Similarity=0.303  Sum_probs=87.7

Q ss_pred             hcCCCCCCCchHHHHHHHcCCHHHHHHHHhh-cccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCc
Q 026440           37 SLSLRNDDDRTLLHVAASCGHPEVVEILLSV-DESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR  115 (238)
Q Consensus        37 ~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~  115 (238)
                      ........|.+.+|+++..+..-+++.+++- +..   ....+..+.-.+|+|+..|-.-.+..+.-.|..++.+|..|+
T Consensus       566 ~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~---~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~  642 (975)
T KOG0520|consen  566 LSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSG---DLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGW  642 (975)
T ss_pred             ccccCCCcchHHHHHHHHHhHHHHHHHHhcccccC---chhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCC
Confidence            3445556688888888888888777777764 332   344566777777775544432223333335677888888888


Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCC------CCCCCCCCcHHHHHHhhCCHHHHHHHHhc
Q 026440          116 TALHYAASKGWLKIVELLISRGAKI------NSKDKVGCTALHRGASTGNSALCELLIEE  169 (238)
Q Consensus       116 ~~l~~a~~~~~~~~~~~l~~~~~~~------~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  169 (238)
                      ||||+|...|+-.++..|++-|.+.      ....+.|.|+..+|-..|+..+..+|-++
T Consensus       643 tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  643 TPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            8888888888888888888665442      22334577888888888887777777654

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.98  E-value=3.7e-05  Score=60.51  Aligned_cols=68  Identities=21%  Similarity=0.127  Sum_probs=56.8

Q ss_pred             hCCHHHHHHHHhcCCCCC------ccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhcccccc
Q 026440          157 TGNSALCELLIEEGAEVD------ATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDF  224 (238)
Q Consensus       157 ~~~~~~~~~Ll~~~~~~~------~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~  224 (238)
                      ..-+..+++|.+++...|      ..+....|+||+|+..|..+++.++++.|+|+..+|..|.||++++....
T Consensus       401 ~~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~nkd  474 (591)
T KOG2505|consen  401 KPEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSANKD  474 (591)
T ss_pred             cCchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccccHH
Confidence            344778899988866553      23445789999999999999999999999999999999999999988443

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=97.60  E-value=0.0015  Score=45.16  Aligned_cols=136  Identities=18%  Similarity=0.095  Sum_probs=74.4

Q ss_pred             HHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHH
Q 026440           49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK  128 (238)
Q Consensus        49 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~  128 (238)
                      |.-|+..+-+.+++..-+....      .-...++.+-.||+..+.++++|+-++-...     +-.+.+.+|....+.+
T Consensus        50 l~HAVk~nmL~ILqkyke~L~~------~~~~~q~LFElAC~~qkydiV~WI~qnL~i~-----~~~~iFdIA~~~kDls  118 (192)
T PF03158_consen   50 LYHAVKYNMLSILQKYKEDLEN------ERYLNQELFELACEEQKYDIVKWIGQNLHIY-----NPEDIFDIAFAKKDLS  118 (192)
T ss_pred             HHHHHHcCcHHHHHHHHHHhhc------chhHHHHHHHHHHHHccccHHHHHhhccCCC-----Cchhhhhhhhhccchh
Confidence            4556666666666555432211      0124456666777777777777774432111     1223455666665554


Q ss_pred             HH----HHHHHcCCCCCCCCCC--CCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHh
Q 026440          129 IV----ELLISRGAKINSKDKV--GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIR  201 (238)
Q Consensus       129 ~~----~~l~~~~~~~~~~~~~--~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  201 (238)
                      +.    ++++++...-+..|..  -..-+..|+..|-...+.-.+++|.+++.      +.|..|+...+-.++.+++.
T Consensus       119 LyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  119 LYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            42    2223332211111111  11235677778888777777777777753      67888888887777777653

These proteins may be involved in promoting survival of infected macrophages [].

>smart00248 ANK ankyrin repeats

Probab=97.50  E-value=0.00027  Score=32.82  Aligned_cols=28  Identities=46%  Similarity=0.580  Sum_probs=20.9

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhcCCCCc
Q 026440          180 GQTPLMNAVICYNKEVALLLIRHGADVD  207 (238)
Q Consensus       180 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~  207 (238)
                      |.||+|+|+..++.++++.|++.|.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            5678888888788888888877776553

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=97.40  E-value=0.0056  Score=42.39  Aligned_cols=136  Identities=14%  Similarity=0.044  Sum_probs=91.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHH
Q 026440           84 PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC  163 (238)
Q Consensus        84 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  163 (238)
                      .+.-|++.+...+++..-+.....   -....+.+..||+..+.++++|+-+.-.   .  .+-.+.+..|....+.++.
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI~qnL~---i--~~~~~iFdIA~~~kDlsLy  120 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWIGQNLH---I--YNPEDIFDIAFAKKDLSLY  120 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHHhhccC---C--CCchhhhhhhhhccchhHH
Confidence            456688888888888877754322   1235678889999999999999954422   1  2233567788888777653


Q ss_pred             ----HHHHhcCCCCCcccc--CCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHH
Q 026440          164 ----ELLIEEGAEVDATDK--AGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAK  233 (238)
Q Consensus       164 ----~~Ll~~~~~~~~~~~--~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~  233 (238)
                          .++.++.......|.  --..-|..|+..|-+..+.-.+++|.+++.      +.+..|+++++..|+.++.
T Consensus       121 slGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  121 SLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhh
Confidence                222233221111111  112456789999999999888899988875      6899999999999988764

These proteins may be involved in promoting survival of infected macrophages [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.28  E-value=0.00064  Score=53.86  Aligned_cols=65  Identities=26%  Similarity=0.262  Sum_probs=54.4

Q ss_pred             CCHHHHHHHHHcCCCCCC------CCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHH
Q 026440          125 GWLKIVELLISRGAKINS------KDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVI  189 (238)
Q Consensus       125 ~~~~~~~~l~~~~~~~~~------~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~  189 (238)
                      .-+..+++|.+++.+.|.      .+..-.|+||+|+..|..+++.+|++.|+|+..+|..|.||..++..
T Consensus       402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~n  472 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSAN  472 (591)
T ss_pred             CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCccccccc
Confidence            346778888888777653      22335689999999999999999999999999999999999998863

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=97.18  E-value=0.0056  Score=43.82  Aligned_cols=49  Identities=18%  Similarity=0.259  Sum_probs=35.4

Q ss_pred             cChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhh
Q 026440           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSV   67 (238)
Q Consensus        10 ~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~   67 (238)
                      ++=+|-.|+..-+++.+..+....         ....+++.+|+..+..+++.+|+..
T Consensus       153 r~isledAV~AsN~~~i~~~VtdK---------kdA~~Am~~si~~~K~dva~~lls~  201 (284)
T PF06128_consen  153 RDISLEDAVKASNYEEISNLVTDK---------KDAHQAMWLSIGNAKEDVALYLLSK  201 (284)
T ss_pred             ccccHHHHHhhcCHHHHHHHhcch---------HHHHHHHHHHhcccHHHHHHHHHhh
Confidence            344577788888888777776543         2245788888888888999888863

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>smart00248 ANK ankyrin repeats

Probab=97.03  E-value=0.0017  Score=29.87  Aligned_cols=19  Identities=58%  Similarity=0.756  Sum_probs=7.1

Q ss_pred             hHHHHHHHcCCHHHHHHHH
Q 026440           47 TLLHVAASCGHPEVVEILL   65 (238)
Q Consensus        47 t~L~~A~~~~~~~~~~~Ll   65 (238)
                      ||+|.|+..++.++++.|+
T Consensus         4 ~~l~~~~~~~~~~~~~~ll   22 (30)
T smart00248        4 TPLHLAAENGNLEVVKLLL   22 (30)
T ss_pred             CHHHHHHHcCCHHHHHHHH
Confidence            3333333333333333333

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=96.46  E-value=0.01  Score=35.38  Aligned_cols=49  Identities=22%  Similarity=0.209  Sum_probs=32.3

Q ss_pred             ccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHh
Q 026440            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLS   66 (238)
Q Consensus         9 ~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~   66 (238)
                      ...+.+..|+..|+.|+++.+++...         .....+..|+...+-++++||++
T Consensus         5 It~~tl~~Ai~GGN~eII~~c~~~~~---------~~~~~l~~AI~~H~n~i~~~l~~   53 (76)
T PF11929_consen    5 ITKKTLEYAIIGGNFEIINICLKKNK---------PDNDCLEYAIKSHNNEIADWLIE   53 (76)
T ss_pred             cCHHHHHHHHhCCCHHHHHHHHHHhc---------cHHHHHHHHHHHhhHHHHHHHHH
Confidence            34556777777777777777775441         01345777777777777777765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.68  E-value=0.16  Score=36.65  Aligned_cols=114  Identities=19%  Similarity=0.239  Sum_probs=72.2

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC----CCcHHHHHHh--hC
Q 026440           85 IHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV----GCTALHRGAS--TG  158 (238)
Q Consensus        85 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~----~~t~l~~a~~--~~  158 (238)
                      |--|+...+.+.+.-++...       ....+++.+++..+.-+++.+|+++- .+...|.-    +.--+.++..  ..
T Consensus       157 ledAV~AsN~~~i~~~VtdK-------kdA~~Am~~si~~~K~dva~~lls~f-~ft~~dv~~~~~~~ydieY~LS~h~a  228 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDK-------KDAHQAMWLSIGNAKEDVALYLLSKF-NFTKQDVASMEKELYDIEYLLSEHSA  228 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcch-------HHHHHHHHHHhcccHHHHHHHHHhhc-ceecchhhhcCcchhhHHHHHhhcCC
Confidence            44466666666665555431       12446777888778888888888751 11111110    1112333333  34


Q ss_pred             CHHHHHHHHhcC-CCCCc---cccCCCcHHHHHHHhCCHHHHHHHHhcCCCC
Q 026440          159 NSALCELLIEEG-AEVDA---TDKAGQTPLMNAVICYNKEVALLLIRHGADV  206 (238)
Q Consensus       159 ~~~~~~~Ll~~~-~~~~~---~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~  206 (238)
                      +..++++++.+| ++++.   +.+.|.|-|.-|.++++.+++.+|+++|+-.
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence            567888888886 55553   3456889999999999999999999999843

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=95.42  E-value=0.051  Score=32.34  Aligned_cols=48  Identities=21%  Similarity=0.238  Sum_probs=37.9

Q ss_pred             chHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHc
Q 026440           46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK  103 (238)
Q Consensus        46 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  103 (238)
                      ...+..|+.+|+.|+++.+++.+..          ...++..|+...+.++++||++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~----------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKP----------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhcc----------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            4567899999999999998864321          14478999999999999999986

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=92.57  E-value=4  Score=31.74  Aligned_cols=147  Identities=15%  Similarity=0.087  Sum_probs=69.1

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHcCC---CCcccCCCCchHHHHHHHcCCHHHHHHH----HHcCCCCCCCCCCCCcH
Q 026440           78 DEEGWAPIHSAASIGNVTIVEMLLSKGA---DVNLKNDGGRTALHYAASKGWLKIVELL----ISRGAKINSKDKVGCTA  150 (238)
Q Consensus        78 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~---~~~~~~~~~~~~l~~a~~~~~~~~~~~l----~~~~~~~~~~~~~~~t~  150 (238)
                      +..|...+..+......+..+.+++.-.   ..-..+..|...+..++.....+..+.+    ...-.. -..|..|...
T Consensus       126 d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~G~~vvq~~l~~~~~~~~~~l~~~l~~~~~~-L~~d~~Gn~v  204 (322)
T cd07920         126 DQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPYGCRVIQRCLEHCSEEQREPLLEEILEHALE-LVQDQFGNYV  204 (322)
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HhcCCchhhH
Confidence            4455556666655555544444443210   0001234555555555554433322222    222111 1235567666


Q ss_pred             HHHHHhhCCHHHHHHHHhcC---CCCCccccCCCcHHHHHHHhCCHHHHHHHHh----cCC-----CCccCCCCCCchhh
Q 026440          151 LHRGASTGNSALCELLIEEG---AEVDATDKAGQTPLMNAVICYNKEVALLLIR----HGA-----DVDVEDKEGYTVLG  218 (238)
Q Consensus       151 l~~a~~~~~~~~~~~Ll~~~---~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~----~~~-----~~~~~~~~g~tpl~  218 (238)
                      +..+...+..+..+.+++.-   ...-..+..|...+..+...+..+.-+.+++    ...     .--..|..|+..+.
T Consensus       205 vq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~Gs~Vve~~l~~~~~~~~~~ii~~l~~~~~~~~~l~~l~~d~~Gn~Viq  284 (322)
T cd07920         205 VQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVVEKCLKHASKEERELIIDEILASGNETSALDTLMKDQYGNYVIQ  284 (322)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHCCHHHHHHHHHHHhcCCCchhHHHHHhCCCcccHHHH
Confidence            77777666654443333320   1111345667777777777766443333333    211     12244567776666


Q ss_pred             ccccccc
Q 026440          219 RASNDFR  225 (238)
Q Consensus       219 ~a~~~~~  225 (238)
                      .+.....
T Consensus       285 ~~l~~~~  291 (322)
T cd07920         285 TALDVAK  291 (322)
T ss_pred             HHHHhCC
Confidence            6555444

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=89.38  E-value=8.6  Score=29.88  Aligned_cols=216  Identities=13%  Similarity=0.047  Sum_probs=120.1

Q ss_pred             hhccChHHHHHHHcCChHHHHHHHHHHhhhhc-CCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHH
Q 026440            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSL-SLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI   85 (238)
Q Consensus         7 ~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~-~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l   85 (238)
                      +..+-..+..+.+.++.+....+++.-.+.-. -..+..|.-.+.-.+..+..+-...+++.-......-..+..|...+
T Consensus        18 ~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~~vl   97 (322)
T cd07920          18 DQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGCRVI   97 (322)
T ss_pred             CchhhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchhHHHH
Confidence            34555678888999999998888887432222 24567788888888888887766655543211111123455676777


Q ss_pred             HHHHHcCCHHHHHHHHHcC---CCCcccCCCCchHHHHHHHcCCHHHHHHHHHc----CCCCCCCCCCCCcHHHHHHhhC
Q 026440           86 HSAASIGNVTIVEMLLSKG---ADVNLKNDGGRTALHYAASKGWLKIVELLISR----GAKINSKDKVGCTALHRGASTG  158 (238)
Q Consensus        86 ~~a~~~~~~~~~~~Ll~~~---~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~----~~~~~~~~~~~~t~l~~a~~~~  158 (238)
                      ..++..+..+....+++.-   ...-..+..|...+..++.....+..+.+++.    -..+ ..+..|...+.-.....
T Consensus        98 qkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l-~~~~~G~~vvq~~l~~~  176 (322)
T cd07920          98 QKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVAL-STHPYGCRVIQRCLEHC  176 (322)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-HcCccccHHHHHHHHhC
Confidence            7777776654444444431   11122456677777777777665555554432    1111 13445555555555554


Q ss_pred             CHHHH----HHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcC---CCCccCCCCCCchhhcccccc
Q 026440          159 NSALC----ELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHG---ADVDVEDKEGYTVLGRASNDF  224 (238)
Q Consensus       159 ~~~~~----~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~---~~~~~~~~~g~tpl~~a~~~~  224 (238)
                      ..+..    +.+...-. .-..|..|+..+..+...+..+..+.+++.-   .-.-..+..|...+..+....
T Consensus       177 ~~~~~~~l~~~l~~~~~-~L~~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~Gs~Vve~~l~~~  248 (322)
T cd07920         177 SEEQREPLLEEILEHAL-ELVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVVEKCLKHA  248 (322)
T ss_pred             CHHHHHHHHHHHHHHHH-HHhcCCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHC
Confidence            44333    33322211 1234677888888888887765444444321   111234456655555554443

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=84.58  E-value=4.9  Score=32.98  Aligned_cols=162  Identities=15%  Similarity=0.117  Sum_probs=76.9

Q ss_pred             hHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHc
Q 026440           12 KDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASI   91 (238)
Q Consensus        12 ~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~   91 (238)
                      -.+..|+.+|+++.|..+++... -....+...+.....+--..|.++++-.+..             +..+=+.+|++.
T Consensus       266 ~~fk~av~~~d~~~v~~~i~~~~-ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~-------------D~~~rFeLAl~l  331 (443)
T PF04053_consen  266 LEFKTAVLRGDFEEVLRMIAASN-LLPNIPKDQGQSIARFLEKKGYPELALQFVT-------------DPDHRFELALQL  331 (443)
T ss_dssp             HHHHHHHHTT-HHH-----HHHH-TGGG--HHHHHHHHHHHHHTT-HHHHHHHSS--------------HHHHHHHHHHC
T ss_pred             HHHHHHHHcCChhhhhhhhhhhh-hcccCChhHHHHHHHHHHHCCCHHHHHhhcC-------------ChHHHhHHHHhc
Confidence            35788999999999877776431 1112223335556666666666666655542             112345677777


Q ss_pred             CCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCC
Q 026440           92 GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA  171 (238)
Q Consensus        92 ~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~  171 (238)
                      |+.+...-+.+...+..    .-...-..|+..|+.++++....+..+.+       ..+.+....|+.+-++.|.+.-.
T Consensus       332 g~L~~A~~~a~~~~~~~----~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~-------~L~lLy~~~g~~~~L~kl~~~a~  400 (443)
T PF04053_consen  332 GNLDIALEIAKELDDPE----KWKQLGDEALRQGNIELAEECYQKAKDFS-------GLLLLYSSTGDREKLSKLAKIAE  400 (443)
T ss_dssp             T-HHHHHHHCCCCSTHH----HHHHHHHHHHHTTBHHHHHHHHHHCT-HH-------HHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhcCcHH----HHHHHHHHHHHcCCHHHHHHHHHhhcCcc-------ccHHHHHHhCCHHHHHHHHHHHH
Confidence            77766655554322111    01123345666777777777766644332       23445555666655555543200


Q ss_pred             CCCccccCCCcHHHHHHHhCCHH-HHHHHHhc
Q 026440          172 EVDATDKAGQTPLMNAVICYNKE-VALLLIRH  202 (238)
Q Consensus       172 ~~~~~~~~~~t~l~~a~~~~~~~-~~~~Ll~~  202 (238)
                          ...+-+.+++.+...|+.+ +++.|.+.
T Consensus       401 ----~~~~~n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  401 ----ERGDINIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             ----HTT-HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             ----HccCHHHHHHHHHHcCCHHHHHHHHHHc
Confidence                0111134555555555543 55555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	238
1uoh_A	226	Human Gankyrin Length = 226		1e-29
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		1e-29
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		2e-28
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		3e-04
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		3e-28
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		3e-04
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-28
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-13
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-27
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-14
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-26
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-05
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		4e-26
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		4e-14
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-26
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-10
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		5e-25
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		5e-14
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		6e-25
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		6e-25
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		6e-25
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-23
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-19
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		7e-25
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-24
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-20
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		6e-06
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-24
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-11
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		5e-24
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-12
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		9e-24
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		4e-11
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-23
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-23
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-04
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-23
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-23
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-21
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		9e-04
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-23
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		3e-13
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		4e-23
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		6e-19
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		3e-22
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		6e-14
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		5e-22
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-18
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		7e-22
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		1e-21
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-21
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-13
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		4e-21
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		9e-20
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		6e-21
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-07
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-20
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-12
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		6e-20
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		3e-15
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		4e-04
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		3e-19
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		1e-14
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-19
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-14
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		4e-19
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-14
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		4e-18
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		1e-16
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		6e-04
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		5e-18
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-16
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		4e-04
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		9e-18
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		3e-16
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		7e-04
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		2e-17
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-17
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		5e-15
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		8e-09
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		4e-17
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-14
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-05
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		5e-17
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		2e-16
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		6e-14
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-16
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		7e-14
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-16
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-12
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		8e-16
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		4e-05
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		9e-16
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		5e-05
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		1e-15
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		1e-11
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		2e-15
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		5e-15
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		2e-13
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		2e-15
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		1e-13
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		2e-14
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		4e-08
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		4e-14
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		7e-11
3so8_A	162	Crystal Structure Of Ankra Length = 162		1e-13
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		1e-13
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		2e-13
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		5e-13
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		2e-12
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		2e-12
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		3e-12
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		6e-12
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		9e-12
2xen_A	91	Structural Determinants For Improved Thermal Stabil		2e-11
2xen_A	91	Structural Determinants For Improved Thermal Stabil		2e-07
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		3e-11
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		8e-11
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		4e-09
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		1e-10
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		3e-05
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		1e-10
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		2e-10
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		2e-10
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		3e-10
1ycs_B	239	P53-53bp2 Complex Length = 239		3e-10
1ycs_B	239	P53-53bp2 Complex Length = 239		2e-05
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		5e-10
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		4e-05
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		5e-10
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		5e-07
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		9e-10
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		1e-09
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		2e-06
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		1e-09
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		1e-09
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		1e-09
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		2e-09
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		3e-06
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		2e-09
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		5e-09
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		2e-06
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		6e-09
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-06
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		1e-08
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		2e-08
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		1e-04
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		3e-08
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		2e-04
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		4e-08
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		2e-04
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		5e-08
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		3e-04
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		9e-08
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		9e-08
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		1e-07
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		1e-07
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		2e-07
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		2e-07
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		3e-06
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		2e-07
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		3e-06
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		2e-07
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		3e-06
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		4e-07
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		3e-06
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		4e-04
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		3e-06
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		3e-06
3deo_A	183	Structural Basis For Specific Substrate Recognition		3e-06
3deo_A	183	Structural Basis For Specific Substrate Recognition		3e-04
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		5e-06
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		5e-06
3kea_A	285	Structure Function Studies Of Vaccinia Virus Host-R		7e-06
3ljn_A	364	Ankyrin Repeat Protein From Leishmania Major Length		1e-05
3t8k_A	186	The Crystal Structure Of A Functionally Unknown Pro		4e-05
1ymp_A	135	The Crystal Structure Of A Partial Mouse Notch-1 An		9e-05

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/197 (42%), Positives = 106/197 (53%), Gaps = 7/197 (3%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           + D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ LL
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
            KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD    TA+HR A+ GN  
Sbjct: 94  GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLK 153
Query: 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
           +  +L+   A  +  D  G TPL  A      E A LL+  GA + +E+KE  T L  A 
Sbjct: 154 MIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK 213
Query: 222 NDFRPILIDAAKAMLEG 238
                IL    K M+EG
Sbjct: 214 GGLGLIL----KRMVEG 226

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/197 (42%), Positives = 106/197 (53%), Gaps = 7/197 (3%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           + D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ LL
Sbjct: 38  DQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKALL 94
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
            KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD    TA+HR A+ GN  
Sbjct: 95  GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLK 154
Query: 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
           +  +L+   A  +  D  G TPL  A      E A LL+  GA + +E+KE  T L  A 
Sbjct: 155 MIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK 214
Query: 222 NDFRPILIDAAKAMLEG 238
                IL    K M+EG
Sbjct: 215 GGLGLIL----KRMVEG 227

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/187 (41%), Positives = 100/187 (53%), Gaps = 3/187 (1%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           + D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ LL
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
            KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD    TA+HR A+ GN  
Sbjct: 94  VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153
Query: 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
           +  +L+   A  +  D  G TPL  A      E A  L+  GA + +E+KE  T L  A 
Sbjct: 154 MVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213
Query: 222 NDFRPIL 228
                IL
Sbjct: 214 GGLGLIL 220

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 149 TALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDV 208
           TALH   S G++ + E L++ G  V+  D AG +PL  A      E+   L+  GA V+ 
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNA 101
Query: 209 EDKEGYTVLGRASNDFRPILIDAAKAMLEG 238
            ++ G T L  A++  R    + A  +LEG
Sbjct: 102 VNQNGCTPLHYAASKNRH---EIAVMLLEG 128

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score =  121 bits (304), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/187 (41%), Positives = 100/187 (53%), Gaps = 3/187 (1%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           + D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ LL
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGXDEIVKALL 93
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
            KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD    TA+HR A+ GN  
Sbjct: 94  VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153
Query: 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
           +  +L+   A  +  D  G TPL  A      E A  L+  GA + +E+KE  T L  A 
Sbjct: 154 MVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213
Query: 222 NDFRPIL 228
                IL
Sbjct: 214 GGLGLIL 220

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 149 TALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDV 208
           TALH   S G++ + E L++ G  V+  D AG +PL  A      E+   L+  GA V+ 
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA 101
Query: 209 EDKEGYTVLGRASNDFRPILIDAAKAMLEG 238
            ++ G T L  A++  R    + A  +LEG
Sbjct: 102 VNQNGCTPLHYAASKNRH---EIAVMLLEG 128

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score =  121 bits (303), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/153 (45%), Positives = 99/153 (64%), Gaps = 3/153 (1%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G+ + V+ L+   E+   VNA D +G  P+H AA  G+  IV++L+SKGADVN K+
Sbjct: 11  AAENGNKDRVKDLI---ENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
             GRT LHYAA +G  +IV+LLIS+GA +N+KD  G T LH  A  G+  + +LLI +GA
Sbjct: 68  SDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLLIRHGA 204
           +V+ +D  G+TPL  A    N+E+  LL + G 
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 60/103 (58%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
           AA  G    V+ LI  GA +N+ D  G T LH  A  G+  + +LLI +GA+V+A D  G
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASND 223
           +TPL  A    +KE+  LLI  GADV+ +D +G T L  A+ +
Sbjct: 71  RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKE 113

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/153 (44%), Positives = 98/153 (64%), Gaps = 3/153 (1%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G+ + V+ L+   E+   VNA D +G  P+H AA  G+  +V++L+SKGADVN K+
Sbjct: 11  AAENGNKDRVKDLI---ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
             GRT LH+AA  G  ++V+LLIS+GA +N+KD  G T LH  A  G+  + +LLI +GA
Sbjct: 68  SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 127
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLLIRHGA 204
           +V+ +D  G+TPL  A    N+EV  LL + G 
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 60/101 (59%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
           AA  G    V+ LI  GA +N+ D  G T LH  A  G+  + +LLI +GA+V+A D  G
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
           +TPL +A    +KEV  LLI  GADV+ +D +G T L  A+
Sbjct: 71  RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAA 111

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/150 (44%), Positives = 98/150 (65%), Gaps = 3/150 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA D++G+ P+H AA  G++ IVE+LL  GADVN K+
Sbjct: 9   AARAGQDDEVRILMA---NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
             G T LH AA +G L+IVE+L+  GA +N+KDK G T LH  A  G+  + E+L++ GA
Sbjct: 66  KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLLIR 201
           +V+A DK G+TP   A+   N+++A +L +
Sbjct: 126 DVNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 155 ASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGY 214
           A  G      +L+  GA+V+A DK G TPL  A    + E+  +L++ GADV+ +DK+GY
Sbjct: 10  ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 69
Query: 215 TVLGRASND 223
           T L  A+ +
Sbjct: 70  TPLHLAARE 78

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score =  114 bits (285), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 98/150 (65%), Gaps = 3/150 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA D++G+ P+H AA  G++ IVE+LL  GADVN K+
Sbjct: 9   AARAGQDDEVRILMA---NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
             G T LH AA +G L+IVE+L+  GA +N+KDK G T LH  A  G+  + E+L++ GA
Sbjct: 66  KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLLIR 201
           +V+A DK G+TP   A+   ++++A +L +
Sbjct: 126 DVNAQDKFGKTPFDLAIREGHEDIAEVLQK 155

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 65/103 (63%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
           AA  G    V +L++ GA +N+KDK G T LH  A  G+  + E+L++ GA+V+A DK G
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASND 223
            TPL  A    + E+  +L++ GADV+ +DK+GYT L  A+ +
Sbjct: 69  YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 111

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score =  113 bits (283), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 67/153 (43%), Positives = 94/153 (61%), Gaps = 3/153 (1%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G+ + V+ LL   E+    NA D +G  P+H AA  G+  IV++LLSKGAD N K+
Sbjct: 11  AAENGNKDRVKDLL---ENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
             GRT LHYAA  G  +IV+LL+S+GA  N+KD  G T LH  A  G+  + +LL+ +GA
Sbjct: 68  SDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 127
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLLIRHGA 204
           + + +D  G+TPL  A    N+E+  LL + G 
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 56/101 (55%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
           AA  G    V+ L+  GA  N+ D  G T LH  A  G+  + +LL+ +GA+ +A D  G
Sbjct: 11  AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
           +TPL  A    +KE+  LL+  GAD + +D +G T L  A+
Sbjct: 71  RTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAA 111

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score =  110 bits (276), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 64/148 (43%), Positives = 96/148 (64%), Gaps = 3/148 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA D++G+ P+H AA  G++ IVE+LL  GADVN K+
Sbjct: 21  AARAGQDDEVRILMA---NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
             G T LH AA +G L+IVE+L+  GA +N+KDK G T LH  A  G+  + E+L++ GA
Sbjct: 78  KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLL 199
           +V+A DK G+T    ++   N+++A +L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 65/103 (63%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
           AA  G    V +L++ GA +N+KDK G T LH  A  G+  + E+L++ GA+V+A DK G
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASND 223
            TPL  A    + E+  +L++ GADV+ +DK+GYT L  A+ +
Sbjct: 81  YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 123

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score =  110 bits (275), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 65/177 (36%), Positives = 98/177 (55%), Gaps = 4/177 (2%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ D R  LH + S    E+   LLS  E+ N+ +  D+ GW P H A S+GN+ +V+ L
Sbjct: 32  KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 101 LSKG--ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
             +    D+N   + G T LH A  K W ++ + LI  GA +  KDK     LHR AS G
Sbjct: 92  YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG 151
Query: 159 NSALCELLIEEG-AEVDATDKAGQTPLMNAVICYNKEVALLLI-RHGADVDVEDKEG 213
           +  L ELL   G + V+  DK G TPL +A+   + + A+LL+ ++GA+ D+ D +G
Sbjct: 152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score =  110 bits (275), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 65/177 (36%), Positives = 98/177 (55%), Gaps = 4/177 (2%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ D R  LH + S    E+   LLS  E+ N+ +  D+ GW P H A S+GN+ +V+ L
Sbjct: 32  KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 101 LSKG--ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
             +    D+N   + G T LH A  K W ++ + LI  GA +  KDK     LHR AS G
Sbjct: 92  YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG 151
Query: 159 NSALCELLIEEG-AEVDATDKAGQTPLMNAVICYNKEVALLLI-RHGADVDVEDKEG 213
           +  L ELL   G + V+  DK G TPL +A+   + + A+LL+ ++GA+ D+ D +G
Sbjct: 152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score =  110 bits (275), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 62/128 (48%), Positives = 85/128 (66%), Gaps = 3/128 (2%)
Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           + RT LH+AA  GH EVV++LL   E+   VNA D+ G  P+H AA  G++ +V++LL  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLL---EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
           GADVN K+  GRT LH AA  G L++V+LL+  GA +N+KDK G T LH  A  G+  + 
Sbjct: 58  GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV 117
Query: 164 ELLIEEGA 171
           +LL+E GA
Sbjct: 118 KLLLEAGA 125

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/124 (47%), Positives = 81/124 (65%)
Query: 81  GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
           G  P+H AA  G++ +V++LL  GADVN K+  GRT LH AA  G L++V+LL+  GA +
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 141 NSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLI 200
           N+KDK G T LH  A  G+  + +LL+E GA+V+A DK G+TPL  A    + EV  LL+
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 201 RHGA 204
             GA
Sbjct: 122 EAGA 125

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/124 (44%), Positives = 77/124 (62%), Gaps = 3/124 (2%)
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEV 173
           GRT LH AA  G L++V+LL+  GA +N+KDK G T LH  A  G+  + +LL+E GA+V
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 174 DATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAK 233
           +A DK G+TPL  A    + EV  LL+  GADV+ +DK G T L  A+ +     ++  K
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH---LEVVK 118
Query: 234 AMLE 237
            +LE
Sbjct: 119 LLLE 122

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score =  110 bits (275), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 65/177 (36%), Positives = 98/177 (55%), Gaps = 4/177 (2%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ D R  LH + S    E+   LLS  E+ N+ +  D+ GW P H A S+GN+ +V+ L
Sbjct: 32  KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 101 LSKG--ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
             +    D+N   + G T LH A  K W ++ + LI  GA +  KDK     LHR AS G
Sbjct: 92  YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG 151
Query: 159 NSALCELLIEEG-AEVDATDKAGQTPLMNAVICYNKEVALLLI-RHGADVDVEDKEG 213
           +  L ELL   G + V+  DK G TPL +A+   + + A+LL+ ++GA+ D+ D +G
Sbjct: 152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/126 (47%), Positives = 80/126 (63%), Gaps = 3/126 (2%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +D   T LH+AA  GHPE+VE+LL   +    VNA D +GW P+H AA  G++ IVE+L
Sbjct: 43  HDDQGSTPLHLAAWIGHPEIVEVLL---KHGADVNARDTDGWTPLHLAADNGHLEIVEVL 99
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L  GADVN ++  G T LH AA +G L+IVE+L+  GA +N++DK G TA       GN 
Sbjct: 100 LKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159
Query: 161 ALCELL 166
            L E+L
Sbjct: 160 DLAEIL 165

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/130 (42%), Positives = 79/130 (60%)
Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
           AA  G    V +L++ GADVN  +D G T LH AA  G  +IVE+L+  GA +N++D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
            T LH  A  G+  + E+L++ GA+V+A D  G TPL  A    + E+  +L++HGADV+
Sbjct: 81  WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 208 VEDKEGYTVL 217
            +DK G T  
Sbjct: 141 AQDKFGKTAF 150

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 155 ASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGY 214
           A  G      +L+  GA+V+A D  G TPL  A    + E+  +L++HGADV+  D +G+
Sbjct: 22  ARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGW 81
Query: 215 TVLGRASND 223
           T L  A+++
Sbjct: 82  TPLHLAADN 90

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/148 (42%), Positives = 92/148 (62%), Gaps = 3/148 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA D  GW P+H AA  G++ IVE+LL  GADVN K+
Sbjct: 21  AARAGQDDEVRILMA---NGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
             G T LH AA +G L+IVE+L+  GA +N+ D  G T LH  A  G+  + E+L++ GA
Sbjct: 78  SLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA 137
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLL 199
           +V+A DK G+T    ++   N+++A +L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 60/101 (59%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
           AA  G    V +L++ GA +N++D  G T LH  A  G+  + E+L++ GA+V+A D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
            TPL  A    + E+  +L+++GADV+  D  G+T L  A+
Sbjct: 81  VTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAA 121

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score =  107 bits (267), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 93/150 (62%), Gaps = 3/150 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA D  GW P+H AA  G++ IVE+LL  GADVN  +
Sbjct: 21  AARAGQDDEVRILMA---NGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
             G T LH AA +G L++VE+L+  GA +N+ D  G T LH  A+ G+  + E+L++ GA
Sbjct: 78  SLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGA 137
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLLIR 201
           +V+A DK G+T    ++   N+++A +L +
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 61/102 (59%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
           AA  G    V +L++ GA +N+ D VG T LH  A  G+  + E+L++ GA+V+A D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASN 222
            TPL  A    + EV  +L+++GADV+  D  G+T L  A+N
Sbjct: 81  VTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAAN 122

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score =  106 bits (265), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 62/148 (41%), Positives = 93/148 (62%), Gaps = 3/148 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA D  G  P+H AA +G++ IVE+LL  GADVN  +
Sbjct: 21  AARAGQDDEVRILMA---NGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
             G T LH AA +G L+IVE+L+  GA +N+ D +G T LH  A TG+  + E+L++ GA
Sbjct: 78  FSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGA 137
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLL 199
           +V+A DK G+T    ++   N+++A +L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 62/102 (60%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
           AA  G    V +L++ GA +N++D  G T LH  A  G+  + E+L++ GA+V+A D +G
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASN 222
            TPL  A    + E+  +L+++GADV+ +D  G T L  A++
Sbjct: 81  STPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAAD 122

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/153 (41%), Positives = 94/153 (61%), Gaps = 3/153 (1%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G+ + V+ LL   E+   VNA D +G  P+H AA  G+  +V++LLS+GAD N K+
Sbjct: 11  AAENGNKDRVKDLL---ENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
             G+T LH AA  G  ++V+LL+S+GA  N+KD  G T LH  A  G+  + +LL+ +GA
Sbjct: 68  SDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 127
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLLIRHGA 204
           + + +D  G+TPL  A    N+EV  LL + G 
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/130 (43%), Positives = 82/130 (63%)
Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
           AA+ G    V +L++ GADVN  +D G T LH AA+ G L+IVE+L+  GA +N+ D  G
Sbjct: 13  AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
            T LH  A  G+  + E+L++ GA+V+A D+AG TPL  A +    E+  +L++HGADV+
Sbjct: 73  ITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVN 132
Query: 208 VEDKEGYTVL 217
            +D  G T  
Sbjct: 133 AQDALGLTAF 142

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 39/73 (53%)
Query: 151 LHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVED 210
           L   A+ G      +L+  GA+V+ATD  G TPL  A      E+  +L+++GADV+  D
Sbjct: 10  LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 211 KEGYTVLGRASND 223
             G T L  A+ D
Sbjct: 70  SAGITPLHLAAYD 82

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/130 (44%), Positives = 85/130 (65%)
Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
           AA  G    V +L++ GADVN ++D G+T LH AA KG L+IVE+L+  GA +N+ DK+G
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
            T LH  A  G+  + E+L++ GA+V+ATD  G TPL  A    + E+  +L+++GADV+
Sbjct: 81  DTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN 140
Query: 208 VEDKEGYTVL 217
            +DK G T  
Sbjct: 141 AQDKFGKTAF 150

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/121 (49%), Positives = 79/121 (65%), Gaps = 3/121 (2%)
Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           RT LH+AA+ GH E+VE+LL    +   VNAVD  G  P+H AAS+G++ IVE+LL  GA
Sbjct: 36  RTPLHMAAAVGHLEIVEVLL---RNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGA 92
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
           DVN K+  G T L+ AA  G L+IVE+L+  GA +N++DK G TA       GN  L E+
Sbjct: 93  DVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEI 152
Query: 166 L 166
           L
Sbjct: 153 L 153

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/130 (43%), Positives = 80/130 (61%)
Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
           AA  G    V +L++ GAD N  +  GRT LH AA+ G L+IVE+L+  GA +N+ D  G
Sbjct: 9   AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
            T LH  AS G+  + E+L++ GA+V+A D  G TPL  A    + E+  +L++HGADV+
Sbjct: 69  TTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVN 128
Query: 208 VEDKEGYTVL 217
            +DK G T  
Sbjct: 129 AQDKFGKTAF 138

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 151 LHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVED 210
           L   A  G      +L+  GA+ +A D  G+TPL  A    + E+  +L+R+GADV+  D
Sbjct: 6   LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 211 KEGYTVLGRASN 222
             G T L  A++
Sbjct: 66  TNGTTPLHLAAS 77

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/148 (41%), Positives = 93/148 (62%), Gaps = 3/148 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA D +G+ P+H AAS G++ IVE+LL  GADVN  +
Sbjct: 21  AARAGQDDEVRILMA---NGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
             G T LH AA+ G L+IVE+L+  GA +N+ D  G T LH  A  G+  + E+L++ GA
Sbjct: 78  LTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA 137
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLL 199
           +V+A DK G+T    ++   N+++A +L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 62/101 (61%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
           AA  G    V +L++ GA +N+ D  G T LH  AS G+  + E+L++ GA+V+A+D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
            TPL  A    + E+  +L++HGADV+  D +G+T L  A+
Sbjct: 81  ITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAA 121

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score =  104 bits (260), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 79/120 (65%), Gaps = 3/120 (2%)
Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH+AA  GH E+VE+LL   ++   VNA D  G  P+H AA  G++ IVE+LL  GAD
Sbjct: 49  TPLHLAAYWGHLEIVEVLL---KNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
           VN K+D G T LH AA++G L+IVE+L+  GA +N++DK G TA     + GN  L E+L
Sbjct: 106 VNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 90.9 bits (224), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 54/130 (41%), Positives = 79/130 (60%)
Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
           AA  G    V +L++ GADVN  +  G T LH AA  G L+IVE+L+  GA +N+ D +G
Sbjct: 21  AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
            T LH  A  G+  + E+L++ GA+V+A D  G TPL  A    + E+  +L+++GADV+
Sbjct: 81  STPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVN 140
Query: 208 VEDKEGYTVL 217
            +DK G T  
Sbjct: 141 AQDKFGKTAF 150

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 92/150 (61%), Gaps = 3/150 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA D  G  P+H AA  G++ IVE+LL  GADVN  +
Sbjct: 21  AARAGQDDEVRILMA---NGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
           + G T LH AA  G L+IVE+L+  GA +N+KD  G T LH  A  G+  + E+L++ GA
Sbjct: 78  NYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA 137
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLLIR 201
           +V+A DK G+T    ++   N+++A +L +
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 64/103 (62%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
           AA  G    V +L++ GA +N+ D +G T LH  A TG+  + E+L++ GA+V+A D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASND 223
            TPL  A    + E+  +L++HGADV+ +D EG+T L  A+ D
Sbjct: 81  ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYD 123

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 56/120 (46%), Positives = 75/120 (62%), Gaps = 3/120 (2%)
Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH+  + GH E++E+LL   + A  VNA D+ GW P+H AA  G++ IVE+LL  GAD
Sbjct: 49  TPLHLVVNNGHLEIIEVLL---KYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
           VN  +  G T LH AA  G L+IVE+L+  GA +N++DK G TA       GN  L E+L
Sbjct: 106 VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 77/130 (59%)
Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
           AA  G    V +L++ GADVN  +  G T LH   + G L+I+E+L+   A +N+ DK G
Sbjct: 21  AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
            T LH  A  G+  + E+L++ GA+V+A D  G TPL  A    + E+  +L+++GADV+
Sbjct: 81  WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN 140
Query: 208 VEDKEGYTVL 217
            +DK G T  
Sbjct: 141 AQDKFGKTAF 150

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score =  100 bits (249), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 56/130 (43%), Positives = 81/130 (62%)
Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
           AA  G    V +L++ GADVN  +  G T LH AA+ G L+IVE+L+  GA +N+ D +G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
            T LH  A  G+  + E+L++ GA+V+A D  G TPL  A I  + E+  +L++HGADV+
Sbjct: 81  STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 208 VEDKEGYTVL 217
            +DK G T  
Sbjct: 141 AQDKFGKTAF 150

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/130 (43%), Positives = 80/130 (61%)
Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
           AA  G    V +L++ GADVN  +  G T LH AA+ G L+IVE+L+  GA +N+ D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
            T LH  A  G+  + E+L++ GA+V+A D  G TPL  A I  + E+  +L++HGADV+
Sbjct: 81  STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 208 VEDKEGYTVL 217
            +DK G T  
Sbjct: 141 AQDKFGKTAF 150

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 90/150 (60%), Gaps = 3/150 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA D  GW P+H AA  G++ IVE+LL  GADVN  +
Sbjct: 21  AARAGRDDEVRILMA---NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
             G T L  AA  G L+IVE+L+  GA +N+ D  G T LH  A  G+  + E+L++ GA
Sbjct: 78  HAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLLIR 201
           +V+A DK G+T    ++   N+++A +L +
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 63/101 (62%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
           AA  G    V +L++ GA +N++D  G T LH  A  G+  + E+L++ GA+V+A D AG
Sbjct: 21  AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
            TPL  A +  + E+  +L+++GADV+  D EG+T L  A+
Sbjct: 81  MTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAA 121

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/133 (43%), Positives = 81/133 (60%), Gaps = 3/133 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNAVD  G  P+H AA  G++ IVE+LL  GADV+  +
Sbjct: 21  AARAGQDDEVRILIA---NGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
             G T LH AA  G L+IVE+L+  GA +N+ D  G T LH  A  G+  + E+L++ GA
Sbjct: 78  VYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA 137
Query: 172 EVDATDKAGQTPL 184
           +V+A DK G+T  
Sbjct: 138 DVNAQDKFGKTAF 150

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 93.6 bits (231), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 54/130 (41%), Positives = 80/130 (61%)
Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
           AA  G    V +L++ GADVN  ++ G T LH AA  G L+IVE+L+  GA +++ D  G
Sbjct: 21  AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
            T LH  A TG+  + E+L++ GA+V+A D  G TPL  A    + E+  +L+++GADV+
Sbjct: 81  FTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVN 140
Query: 208 VEDKEGYTVL 217
            +DK G T  
Sbjct: 141 AQDKFGKTAF 150

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 88/183 (48%), Gaps = 3/183 (1%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +  DD+T LH AA  GH  +V++LL  + + N+       G  P+H AA  G+V  V  L
Sbjct: 76  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA---GHTPLHIAAREGHVETVLAL 132
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L K A        G T LH AA  G +++ ELL+ R A  N+  K G T LH      N 
Sbjct: 133 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 192
Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRA 220
            + +LL+  G    +    G TPL  A      EVA  L+++G   + E  +G T L  A
Sbjct: 193 DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLA 252
Query: 221 SND 223
           + +
Sbjct: 253 AQE 255

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 57/108 (52%)
Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 175
           T LH A+  G L IV+ L+ RGA  N  +    T LH  A  G++ + + L++  A+V+A
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 176 TDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASND 223
             K  QTPL  A    +  +  LL+ + A+ ++    G+T L  A+ +
Sbjct: 76  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE 123

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/156 (40%), Positives = 92/156 (58%), Gaps = 4/156 (2%)
Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           R LL  AA  G  + V IL++   +   VNA D  G  P+H AA  G++ IVE+LL  GA
Sbjct: 16  RKLLE-AARAGQDDEVRILMA---NGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA 71
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
           DV+  +  G T LH AA  G L+IVE+L+  GA +N+ D  G T LH  A  G   + E+
Sbjct: 72  DVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEV 131
Query: 166 LIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIR 201
           L++ GA+V+A DK G+T    ++   N+++A +L +
Sbjct: 132 LLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 111 NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEG 170
           +D GR  L  AA  G    V +L++ GA +N+ D  G T LH  A +G+  + E+L++ G
Sbjct: 12  SDLGRKLLE-AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHG 70
Query: 171 AEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
           A+VDA+D  G TPL  A    + E+  +L+++GADV+  D +G T L  A+
Sbjct: 71  ADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAA 121

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 94.0 bits (232), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 74/115 (64%), Gaps = 3/115 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA+DE+G  P+H AA +G++ IVE+LL  GADVN ++
Sbjct: 21  AARAGQDDEVRILMA---NGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
           + G T LH AA +G L+IVE+L+  GA +N++DK G TA       GN  L E+L
Sbjct: 78  NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 70/112 (62%)
Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
           AA  G    V +L++ GADVN  ++ G T LH AA  G L+IVE+L+  GA +N++D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL 199
            T LH  A  G+  + E+L++ GA+V+A DK G+T    ++   N+++A +L
Sbjct: 81  ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 38/67 (56%)
Query: 155 ASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGY 214
           A  G      +L+  GA+V+A D+ G TPL  A    + E+  +L+++GADV+ ED  G 
Sbjct: 22  ARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGI 81
Query: 215 TVLGRAS 221
           T L  A+
Sbjct: 82  TPLHLAA 88

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/142 (40%), Positives = 77/142 (54%), Gaps = 7/142 (4%)
Query: 45  DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW--APIHSAASIGNVTIVEMLLS 102
           DR LL  AA  G  E V+ L +V      VN  D EG    P+H AA    V++VE LL 
Sbjct: 13  DRQLLE-AAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 67
Query: 103 KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL 162
            GADV+ K+ GG   LH A S G  ++ ELL+  GA +N  D    T LH  A+ G   +
Sbjct: 68  HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 127
Query: 163 CELLIEEGAEVDATDKAGQTPL 184
           C+LL++ GA+    ++ G TPL
Sbjct: 128 CKLLLQHGADPTKKNRDGNTPL 149

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 74/132 (56%), Gaps = 3/132 (2%)
Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGR--TALHYAASKGWLKIVELLISRGAKINSKDK 145
           AA  G+V  V+ L +  + VN ++  GR  T LH+AA    + +VE L+  GA +++KDK
Sbjct: 19  AAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 77
Query: 146 VGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGAD 205
            G   LH   S G+  + ELL++ GA V+  D    TPL  A      E+  LL++HGAD
Sbjct: 78  GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 137
Query: 206 VDVEDKEGYTVL 217
              ++++G T L
Sbjct: 138 PTKKNRDGNTPL 149

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/142 (40%), Positives = 77/142 (54%), Gaps = 7/142 (4%)
Query: 45  DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW--APIHSAASIGNVTIVEMLLS 102
           DR LL  AA  G  E V+ L +V      VN  D EG    P+H AA    V++VE LL 
Sbjct: 9   DRQLLE-AAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63
Query: 103 KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL 162
            GADV+ K+ GG   LH A S G  ++ ELL+  GA +N  D    T LH  A+ G   +
Sbjct: 64  HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 123
Query: 163 CELLIEEGAEVDATDKAGQTPL 184
           C+LL++ GA+    ++ G TPL
Sbjct: 124 CKLLLQHGADPTKKNRDGNTPL 145

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 74/132 (56%), Gaps = 3/132 (2%)
Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGR--TALHYAASKGWLKIVELLISRGAKINSKDK 145
           AA  G+V  V+ L +  + VN ++  GR  T LH+AA    + +VE L+  GA +++KDK
Sbjct: 15  AAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 73
Query: 146 VGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGAD 205
            G   LH   S G+  + ELL++ GA V+  D    TPL  A      E+  LL++HGAD
Sbjct: 74  GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 133
Query: 206 VDVEDKEGYTVL 217
              ++++G T L
Sbjct: 134 PTKKNRDGNTPL 145

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/142 (40%), Positives = 77/142 (54%), Gaps = 7/142 (4%)
Query: 45  DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW--APIHSAASIGNVTIVEMLLS 102
           DR LL  AA  G  E V+ L +V      VN  D EG    P+H AA    V++VE LL 
Sbjct: 11  DRQLLE-AAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 65
Query: 103 KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL 162
            GADV+ K+ GG   LH A S G  ++ ELL+  GA +N  D    T LH  A+ G   +
Sbjct: 66  HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 125
Query: 163 CELLIEEGAEVDATDKAGQTPL 184
           C+LL++ GA+    ++ G TPL
Sbjct: 126 CKLLLQHGADPTKKNRDGNTPL 147

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 74/132 (56%), Gaps = 3/132 (2%)
Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGR--TALHYAASKGWLKIVELLISRGAKINSKDK 145
           AA  G+V  V+ L +  + VN ++  GR  T LH+AA    + +VE L+  GA +++KDK
Sbjct: 17  AAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 75
Query: 146 VGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGAD 205
            G   LH   S G+  + ELL++ GA V+  D    TPL  A      E+  LL++HGAD
Sbjct: 76  GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 135
Query: 206 VDVEDKEGYTVL 217
              ++++G T L
Sbjct: 136 PTKKNRDGNTPL 147

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 71/115 (61%), Gaps = 3/115 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           A   G  + V IL++   +   VNA+D+ G  P+H AA  G++ IVE+LL  GADVN ++
Sbjct: 21  ATRAGQDDEVRILMA---NGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
             GRT LH AA+ G L+IVE+L+  GA +N++DK G TA       GN  L E+L
Sbjct: 78  IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 69/103 (66%)
Query: 97  VEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAS 156
           V +L++ GADVN  +D G T LH AA +G L+IVE+L+  GA +N++D  G T LH  A+
Sbjct: 30  VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAAT 89
Query: 157 TGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL 199
            G+  + E+L+E GA+V+A DK G+T    ++   N+++A +L
Sbjct: 90  VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 163 CELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
             +L+  GA+V+A D AG TPL  A    + E+  +L++HGADV+  D  G T L  A+
Sbjct: 30  VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAA 88

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 70/115 (60%), Gaps = 3/115 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           A   G  + V IL++   +   VNA+D+ G  P+H AA  G++ IVE+LL  GADVN  +
Sbjct: 21  ATRAGQDDEVRILMA---NGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
             GRT LH AA+ G L+IVE+L+  GA +N++DK G TA       GN  L E+L
Sbjct: 78  SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 68/103 (66%)
Query: 97  VEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAS 156
           V +L++ GADVN  +D G T LH AA +G L+IVE+L+  GA +N+ D  G T LH  A+
Sbjct: 30  VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAAT 89
Query: 157 TGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL 199
            G+  + E+L+E GA+V+A DK G+T    ++   N+++A +L
Sbjct: 90  VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 163 CELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
             +L+  GA+V+A D AG TPL  A    + E+  +L++HGADV+  D  G T L  A+
Sbjct: 30  VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAA 88

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 70/115 (60%), Gaps = 3/115 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           A   G  + V IL++   +   VNA+D+ G  P+H AA  G++ IVE+LL  GADVN  +
Sbjct: 21  ATRAGQDDEVRILMA---NGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
             GRT LH AA+ G L+IVE+L+  GA +N++DK G TA       GN  L E+L
Sbjct: 78  IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 68/103 (66%)
Query: 97  VEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAS 156
           V +L++ GADVN  +D G T LH AA +G L+IVE+L+  GA +N+ D  G T LH  A+
Sbjct: 30  VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAAT 89
Query: 157 TGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL 199
            G+  + E+L+E GA+V+A DK G+T    ++   N+++A +L
Sbjct: 90  VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 163 CELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
             +L+  GA+V+A D AG TPL  A    + E+  +L++HGADV+  D  G T L  A+
Sbjct: 30  VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAA 88

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 79/152 (51%)
Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           VN   ++G +P+H AA  G   ++ +LL  GA+   +N      LH A  +G  ++V+ L
Sbjct: 79  VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 134 ISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNK 193
           +   AK N KD  G T L    S G+  L  LL++ GA ++A++  G T L  AVI  + 
Sbjct: 139 LDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHV 198
Query: 194 EVALLLIRHGADVDVEDKEGYTVLGRASNDFR 225
            V  LL+ HGA V V +K   T +  A  + +
Sbjct: 199 FVVELLLLHGASVQVLNKRQRTAVDCAEQNSK 230

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 61/91 (67%)
Query: 81  GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
           G  P+H AA  G++ +V++LL  GADVN K+  GRT LH AA  G L++V+LL+  GA +
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 141 NSKDKVGCTALHRGASTGNSALCELLIEEGA 171
           N+KDK G T LH  A  G+  + +LL+E GA
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 59/91 (64%)
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEV 173
           GRT LH AA  G L++V+LL+  GA +N+KDK G T LH  A  G+  + +LL+E GA+V
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 174 DATDKAGQTPLMNAVICYNKEVALLLIRHGA 204
           +A DK G+TPL  A    + EV  LL+  GA
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 147 GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADV 206
           G T LH  A  G+  + +LL+E GA+V+A DK G+TPL  A    + EV  LL+  GADV
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 207 DVEDKEGYTVLGRASNDFRPILIDAAKAMLE 237
           + +DK G T L  A+ +     ++  K +LE
Sbjct: 62  NAKDKNGRTPLHLAARNGH---LEVVKLLLE 89

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 68/115 (59%), Gaps = 3/115 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA D +G  P+H AA   ++ IVE+LL  GADVN  +
Sbjct: 21  AARAGQDDEVRILMA---NGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
           + G T LH AA  G L+IVE+L+  GA +N++DK G TA       GN  L E+L
Sbjct: 78  NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 68/114 (59%)
Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
           AA  G    V +L++ GADVN  +  G T LH AA    L+IVE+L+  GA +N+ D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIR 201
            T LH  A  G+  + E+L++ GA+V+A DK G+T    ++   N+++A +L +
Sbjct: 81  STPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 38/67 (56%)
Query: 155 ASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGY 214
           A  G      +L+  GA+V+A D+ G TPL  A    + E+  +L++HGADV+  D +G 
Sbjct: 22  ARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGS 81
Query: 215 TVLGRAS 221
           T L  A+
Sbjct: 82  TPLHLAA 88

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 98/181 (54%), Gaps = 4/181 (2%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           ++D RT L  AA   H E V+ L+   ++  +V+  D EG   +H AA  G+  +V+ LL
Sbjct: 41  SEDQRTPLMEAAENNHLEAVKYLI---KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLL 97
Query: 102 SKGA-DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           S G  DVN ++DGG T + +A     + +V+LL+S+G+ IN +D      LH  A +G  
Sbjct: 98  SNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCV 157
Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRA 220
            + E+L+    ++ A +  G +PL  A      +  +L +   +DV +++KEG T L  A
Sbjct: 158 DIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCA 217
Query: 221 S 221
           S
Sbjct: 218 S 218

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 70/134 (52%)
Query: 51  VAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK 110
           +   C     V + L +D + N +N  D+ G++P+H A   G   +VEML+ +GA +N+ 
Sbjct: 9   IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 68
Query: 111 NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEG 170
           N G  T LH AAS G   IV+ L+   A IN+ ++ G   LH     G   + E L+  G
Sbjct: 69  NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 128
Query: 171 AEVDATDKAGQTPL 184
           A V   +K G+ P+
Sbjct: 129 ALVSICNKYGEMPV 142

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 80/152 (52%), Gaps = 1/152 (0%)
Query: 85  IHSAASIGNVTIVEMLLSKGA-DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
           I +    GN   V + L     D+N  +D G + LH+A  +G   +VE+LI RGA+IN  
Sbjct: 9   IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 68
Query: 144 DKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHG 203
           ++   T LH  AS G+  + + L++  A+++A ++ G  PL  A      +VA  L+ +G
Sbjct: 69  NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 128
Query: 204 ADVDVEDKEGYTVLGRASNDFRPILIDAAKAM 235
           A V + +K G   + +A    R +L + A+ M
Sbjct: 129 ALVSICNKYGEMPVDKAKAPLRELLRERAEKM 160

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 70/134 (52%)
Query: 51  VAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK 110
           +   C     V + L +D + N +N  D+ G++P+H A   G   +VEML+ +GA +N+ 
Sbjct: 4   IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 63
Query: 111 NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEG 170
           N G  T LH AAS G   IV+ L+   A IN+ ++ G   LH     G   + E L+  G
Sbjct: 64  NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 123
Query: 171 AEVDATDKAGQTPL 184
           A V   +K G+ P+
Sbjct: 124 ALVSICNKYGEMPV 137

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 73.9 bits (180), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 80/152 (52%), Gaps = 1/152 (0%)
Query: 85  IHSAASIGNVTIVEMLLSKGA-DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
           I +    GN   V + L     D+N  +D G + LH+A  +G   +VE+LI RGA+IN  
Sbjct: 4   IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 63
Query: 144 DKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHG 203
           ++   T LH  AS G+  + + L++  A+++A ++ G  PL  A      +VA  L+ +G
Sbjct: 64  NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 123
Query: 204 ADVDVEDKEGYTVLGRASNDFRPILIDAAKAM 235
           A V + +K G   + +A    R +L + A+ M
Sbjct: 124 ALVSICNKYGEMPVDKAKAPLRELLRERAEKM 155

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 67/115 (58%), Gaps = 3/115 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL +   +   VNA D  G  P+H AA +G++ IVE+LL  GADVN   
Sbjct: 21  AARAGQDDEVRILTA---NGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
           + GRT LH AA    L+IVE+L+  GA +N++DK G TA       GN  L E+L
Sbjct: 78  NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 66/114 (57%)
Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
           AA  G    V +L + GADVN  +  G T LH AA  G L+IVE+L+  GA +N+    G
Sbjct: 21  AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIR 201
            T LH  A   +  + E+L++ GA+V+A DK G+T    ++   N+++A +L +
Sbjct: 81  RTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 80.5 bits (197), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/186 (34%), Positives = 99/186 (53%), Gaps = 18/186 (9%)
Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH A      ++VE+LL     A+ V    + G  P   AA  G+V ++++ LSKGAD
Sbjct: 61  TPLHNAVQMSREDIVELLLR--HGADPV-LRKKNGATPFILAAIAGSVKLLKLFLSKGAD 117
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV----------GCTALHRGAS 156
           VN  +  G TA   AA  G +K ++ L  RGA +N + K           G TAL   A 
Sbjct: 118 VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 177
Query: 157 TGNSALCELLIEE-GAEVDATDKAGQTPLMNAVICYN----KEVALLLIRHGADVDVEDK 211
            G+  + ++L++E GA+V+A D  G+  L++A++  +    + +  LL+ HGADV+V  +
Sbjct: 178 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE 237
Query: 212 EGYTVL 217
            G T L
Sbjct: 238 RGKTPL 243

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 129 IVELLISRGAKIN-SKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
           +V+ L+  GA +N  +++ G T LH         + ELL+  GA+     K G TP + A
Sbjct: 40  LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILA 99
Query: 188 VICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
            I  + ++  L +  GADV+  D  G+T    A+
Sbjct: 100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAA 133

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/186 (34%), Positives = 99/186 (53%), Gaps = 18/186 (9%)
Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH A      ++VE+LL     A+ V    + G  P   AA  G+V ++++ LSKGAD
Sbjct: 41  TPLHNAVQMSREDIVELLLR--HGADPV-LRKKNGATPFLLAAIAGSVKLLKLFLSKGAD 97
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV----------GCTALHRGAS 156
           VN  +  G TA   AA  G +K ++ L  RGA +N + K           G TAL   A 
Sbjct: 98  VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157
Query: 157 TGNSALCELLIEE-GAEVDATDKAGQTPLMNAVICYN----KEVALLLIRHGADVDVEDK 211
            G+  + ++L++E GA+V+A D  G+  L++A++  +    + +  LL+ HGADV+V  +
Sbjct: 158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE 217
Query: 212 EGYTVL 217
            G T L
Sbjct: 218 RGKTPL 223

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 129 IVELLISRGAKINSKDKVG-CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
           +V+ L+  GA +N +++ G  T LH         + ELL+  GA+     K G TP + A
Sbjct: 20  LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLA 79
Query: 188 VICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
            I  + ++  L +  GADV+  D  G+T    A+
Sbjct: 80  AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAA 113

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 49  LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
           LH+AA  GH    E+LL    S +    VD     P+H AAS G+  IVE+LL  GADVN
Sbjct: 38  LHLAAQYGHFSTTEVLLRAGVSRDARTKVDR---TPLHMAASEGHANIVEVLLKHGADVN 94
Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
            K+    TALH+A      ++VELLI  GA ++++ K   TA       GN  L E+L
Sbjct: 95  AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
           AA  G    V +L++ GA     +  G + LH AA  G     E+L+  G   +++ KV 
Sbjct: 9   AARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
            T LH  AS G++ + E+L++ GA+V+A D    T L  A    ++EV  LLI++GADV 
Sbjct: 68  RTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH 127
Query: 208 VEDK 211
            + K
Sbjct: 128 TQSK 131

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 67/115 (58%), Gaps = 3/115 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA DE G  P++ A + G++ IVE+LL  GADVN  +
Sbjct: 21  AARAGQDDEVRILMA---NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
             G T LH AA  G L+I E+L+  GA +N++DK G TA       GN  L E+L
Sbjct: 78  AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 71/112 (63%)
Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
           AA  G    V +L++ GADVN K++ G T L+ A + G L+IVE+L+  GA +N+ D +G
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL 199
            T LH  A  G+  + E+L++ GA+V+A DK G+T    ++   N+++A +L
Sbjct: 81  FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 4/112 (3%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
           AA  G    V +L++ GA +N+KD+ G T L+   + G+  + E+L++ GA+V+A D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTV----LGRASNDFRPIL 228
            TPL  A    + E+A +L++HGADV+ +DK G T     +G  + D   IL
Sbjct: 81  FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 66/115 (57%), Gaps = 3/115 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA D+ G  P+H AA   ++ IVE+LL  GADVN  +
Sbjct: 21  AARAGQDDEVRILMA---NGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
             G T LH  A  G L+IVE+L+  GA +N++DK G TA       GN  L E+L
Sbjct: 78  AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 69/112 (61%)
Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
           AA  G    V +L++ GADVN ++  G T LH AA    L+IVE+L+  GA +N+ D +G
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL 199
            T LH  A  G+  + E+L++ GA+V+A DK G+T    ++   N+++A +L
Sbjct: 81  ETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 101/240 (42%), Gaps = 60/240 (25%)
Query: 49  LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD-- 106
           LH A S GH EV E+LL   +    VNA+D   + P+H AAS   V +  +LLS GAD  
Sbjct: 95  LHNACSYGHYEVTELLL---KHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT 151
Query: 107 ---------------------------------------------------VNLKNDGGR 115
                                                              +N K     
Sbjct: 152 LVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSH 211
Query: 116 -TALHYAASKGWLK---IVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
            TALH A +    K   + ELL+ +GA +N K+K   T LH  A   ++ + E+L + GA
Sbjct: 212 ETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA 271
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDA 231
           +++A D  GQT L  A +  + +   LL+ +G+D  +   +G+T     +   + IL ++
Sbjct: 272 KMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQILSES 331

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 50/98 (51%)
Query: 128 KIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
           K++ LL       ++ D    T LH  A      + +LL++ GA+V A DK G  PL NA
Sbjct: 39  KLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNA 98
Query: 188 VICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFR 225
               + EV  LL++HGA V+  D   +T L  A++  R
Sbjct: 99  CSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNR 136

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/97 (42%), Positives = 63/97 (64%)
Query: 79  EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
           ++G  P+H+AA  G+   V+ LLSKGADVN ++  G T LH AA  G  +IV+LL+++GA
Sbjct: 7   KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 139 KINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 175
            +N++ K G T  H     G+  + +LL  +GA+V+A
Sbjct: 67  DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 56/96 (58%)
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEV 173
           G T LH AA  G  + V+ L+S+GA +N++ K G T LH  A  G++ + +LL+ +GA+V
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 174 DATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVE 209
           +A  K G TP   A    + E+  LL   GADV+  
Sbjct: 69  NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Query: 69  ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
           E  NV+N  DEEG+ P+  AA+ G + +VE LL  GAD  L   G  +AL  A SKG+  
Sbjct: 22  EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 81
Query: 129 IVELLISRGAKINSKDKVGCTALHRGASTGNSALC-ELLIEEGAE 172
           IV++L+  G  +N  D  G T L   A  GN   C ++L+E GA+
Sbjct: 82  IVKMLLDCGVDVNEYDWNGGTPLLY-AVHGNHVKCVKMLLESGAD 125

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Query: 69  ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
           E  NV+N  DEEG+ P+  AA+ G + +VE LL  GAD  L   G  +AL  A SKG+  
Sbjct: 40  EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 99
Query: 129 IVELLISRGAKINSKDKVGCTALHRGASTGNSALC-ELLIEEGAE 172
           IV++L+  G  +N  D  G T L   A  GN   C ++L+E GA+
Sbjct: 100 IVKMLLDCGVDVNEYDWNGGTPLLY-AVHGNHVKCVKMLLESGAD 143

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Query: 69  ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
           E  NV+N  DEEG+ P+  AA+ G + +VE LL  GAD  L   G  +AL  A SKG+  
Sbjct: 24  EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 83
Query: 129 IVELLISRGAKINSKDKVGCTALHRGASTGNSALC-ELLIEEGAE 172
           IV++L+  G  +N  D  G T L   A  GN   C ++L+E GA+
Sbjct: 84  IVKMLLDCGVDVNEYDWNGGTPLLY-AVHGNHVKCVKMLLESGAD 127

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 76/144 (52%), Gaps = 5/144 (3%)
Query: 43  DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLS 102
           D + T LH A   GH  +V  L+      +++   D EG + IH AA  G+ +IV  L++
Sbjct: 74  DLNSTPLHWATRQGHLSMVVQLMKYGADPSLI---DGEGCSCIHLAAQFGHTSIVAYLIA 130
Query: 103 KGADVNLKNDGGRTALHYAASKGW-LKIVELLISRGAKINSKDKV-GCTALHRGASTGNS 160
           KG DV++ +  G T L +AA +   +    LL++    +N  DK    TALH     GN+
Sbjct: 131 KGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNT 190
Query: 161 ALCELLIEEGAEVDATDKAGQTPL 184
            +  LL+E GA VDA +  G++ L
Sbjct: 191 TVISLLLEAGANVDAQNIKGESAL 214

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 96/210 (45%), Gaps = 30/210 (14%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           N D  T LH A    + ++V+ L  V+  AN+ N  D EGW P+H+AAS G + I E L+
Sbjct: 70  NVDGLTALHQACIDDNVDMVKFL--VENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLI 126
Query: 102 SKGADVNLKNDGGRTALHYAAS------------------KGWLKIVELLISRGAK--IN 141
           S+GA V   N  G T L  A                    +   K  E ++ R A+  +N
Sbjct: 127 SQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLN 186
Query: 142 S-------KDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
           S         K G TALH  A+ G + + +LLI+   +V+  D  G TPL  A     +E
Sbjct: 187 SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEE 246
Query: 195 VALLLIRHGADVDVEDKEGYTVLGRASNDF 224
              +L+ +  D++  +K G T    A  D 
Sbjct: 247 ACRILVENLCDMEAVNKVGQTAFDVADEDI 276

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 72/150 (48%), Gaps = 10/150 (6%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +N+  +T LH+A     PE+ E LL       +    D  G  P+H A   G +  V +L
Sbjct: 38  QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR---DFRGNTPLHLACEQGCLASVGVL 94
Query: 101 LSKGADVNLK------NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV-GCTALHR 153
                  +L       N  G T LH A+  G+L IVELL+S GA +N+++   G TALH 
Sbjct: 95  TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL 154
Query: 154 GASTGNSALCELLIEEGAEVDATDKAGQTP 183
                N  L  LL++ GA+V+     G +P
Sbjct: 155 AVDLQNPDLVSLLLKCGADVNRVTYQGYSP 184

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 72/150 (48%), Gaps = 10/150 (6%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +N+  +T LH+A     PE+ E LL       +    D  G  P+H A   G +  V +L
Sbjct: 41  QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR---DFRGNTPLHLACEQGCLASVGVL 97
Query: 101 LSKGADVNLK------NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV-GCTALHR 153
                  +L       N  G T LH A+  G+L IVELL+S GA +N+++   G TALH 
Sbjct: 98  TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL 157
Query: 154 GASTGNSALCELLIEEGAEVDATDKAGQTP 183
                N  L  LL++ GA+V+     G +P
Sbjct: 158 AVDLQNPDLVSLLLKCGADVNRVTYQGYSP 187

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 91/181 (50%), Gaps = 10/181 (5%)
Query: 48  LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADV 107
           LL  A      +V EIL    ++   V+ VD EG  P++ A    ++ I + L+ +GAD+
Sbjct: 9   LLEAANQRDTKKVKEIL---QDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI 65
Query: 108 NLKNDGGRTALHYAASKGWLKIVELLISRGAK-INSKDKVGCTALHRGASTGNSALCELL 166
           NL+N    +   YA ++G  +I+  ++      +N  ++ G  AL   A  G+    +LL
Sbjct: 66  NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLL 125
Query: 167 IEEGAE-VDATDKAGQTPLMNAVICYN-----KEVALLLIRHGADVDVEDKEGYTVLGRA 220
           +E+G E +D  +  G T L+ AV         +++  LL+ +GAD  ++D  G T +  A
Sbjct: 126 LEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYA 185
Query: 221 S 221
           +
Sbjct: 186 N 186

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 94/186 (50%), Gaps = 6/186 (3%)
Query: 42  NDDDRTLLHVAASCGH-PEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++D  T LH+A   G+ P V  ++    +    ++  +     P+H A      ++V +L
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK----INSKDKVGCTALHRGAS 156
           ++ GA     +  G+TA H A        +  L+   A     + +++  G TALH   +
Sbjct: 66  VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN 125
Query: 157 TGNSALCELLIEEGAEVDATD-KAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYT 215
           T      +LL+E GA++DA D K+G++PL++AV   +  +  LL++HGA+V+ +   G +
Sbjct: 126 TECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSS 185
Query: 216 VLGRAS 221
            L  AS
Sbjct: 186 ALHSAS 191

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 48/79 (60%)
Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
           AA  G    V +L++ GADVN K+  G T LH AA +G L+IVE+L+  GA +N++DK G
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 148 CTALHRGASTGNSALCELL 166
            TA       GN  L E+L
Sbjct: 69  KTAFDISIDNGNEDLAEIL 87

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 50/81 (61%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
           AA  G    V +L++ GA +N+KDK G T LH  A  G+  + E+L++ GA+V+A DK G
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 181 QTPLMNAVICYNKEVALLLIR 201
           +T    ++   N+++A +L +
Sbjct: 69  KTAFDISIDNGNEDLAEILQK 89

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 58/108 (53%)
Query: 77  VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR 136
            +  G   +H A+  G++  VE LL  G+D N+K+  G T LH A + G LK+VELL+  
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 137 GAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
            A +N+      + LH  A  G+  + +LL+  GA  +A +  G  P+
Sbjct: 66  KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 3/155 (1%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R+  +RT L VA   G    ++ L+   E+ + +   D EG   +  A     + I E L
Sbjct: 31  RDSYNRTPLMVACMLGMENAIDKLV---ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKL 87
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           LSKG++VN K+  G+T L ++   G+ ++   L+  GA +N ++  G T L   +  G S
Sbjct: 88  LSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRS 147
Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEV 195
            + + L+E GA++ A D  G T   +A I   +EV
Sbjct: 148 EIVKKLLELGADISARDLTGLTAEASARIFGRQEV 182

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 3/130 (2%)
Query: 108 NLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLI 167
           N ++   RT L  A   G    ++ L+    K+  KD  G TAL          + E L+
Sbjct: 29  NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 168 EEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPI 227
            +G+ V+  D +G+TPLM ++I    E++  L+ HGA+V+  + EG T L  AS   R  
Sbjct: 89  SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSE 148
Query: 228 LIDAAKAMLE 237
           ++   K +LE
Sbjct: 149 IV---KKLLE 155

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 5/170 (2%)
Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           D  + LH A   GH   V+ILL   +    VN V  +   P+ +A   G+   V +LL  
Sbjct: 91  DHVSPLHEACLGGHLSCVKILL---KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH 147
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
           GA V  ++D   + +H AA +G ++ V  LI+ G  I+ K     T L+        A  
Sbjct: 148 GASVQPESDLA-SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACV 206
Query: 164 ELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEG 213
           + L+E GA+V+   K   +PL   V   ++E+A LL+  GAD   ++ EG
Sbjct: 207 KKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEG 255

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 47/94 (50%)
Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 175
           + +H AA  G    +  LIS+G  +N       + LH     G+ +  ++L++ GA+V+ 
Sbjct: 61  SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 176 TDKAGQTPLMNAVICYNKEVALLLIRHGADVDVE 209
                 TPL NA +  + +   LL++HGA V  E
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE 154

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 91/180 (50%), Gaps = 6/180 (3%)
Query: 59  EVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTAL 118
           +V+  LL+  + A +   +D+ G   +H AA        + LL  GAD N +++ GRT L
Sbjct: 31  QVISDLLA--QGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPL 88
Query: 119 HYAASKGWLKIVELLI-SRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD 177
           H A +   + + ++L+ +R   +N++   G T L   A      + E LI   A+++A D
Sbjct: 89  HAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAAD 148
Query: 178 KAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKAMLE 237
            +G+T L  A    N E   +L+ H A+ D +D +  T L  A+   R    +A+KA+L+
Sbjct: 149 NSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAA---REGSYEASKALLD 205

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 72  NVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
           N+VN  DE G+ P+  A++ G +  V  LL  GAD ++      +AL  A++ G+  IV 
Sbjct: 27  NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVG 86
Query: 132 LLISRGAKINSKDKVGCTALHRGASTGNSALC-ELLIEEGAEVDATDKAGQTPLMNAVIC 190
           LL+ R   IN  D  G T L   A  GN   C E L+  GA++     +G TP+  AV  
Sbjct: 87  LLLERDVDINIYDWNGGTPLLY-AVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVAL 145
Query: 191 YNKEVALLLIRH 202
             ++V  ++  H
Sbjct: 146 GYRKVQQVIENH 157

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 72  NVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
           N+VN  DE G+ P+  A++ G +  V  LL  GAD ++      +AL  A++ G+  IV 
Sbjct: 27  NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVG 86
Query: 132 LLISRGAKINSKDKVGCTALHRGASTGNSALC-ELLIEEGAEVDATDKAGQTPLMNAVIC 190
           LL+ R   IN  D  G T L   A  GN   C E L+  GA++     +G TP+  AV  
Sbjct: 87  LLLERDVDINIYDWNGGTPLLY-AVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVAL 145
Query: 191 YNKEVALLLIRH 202
             ++V  ++  H
Sbjct: 146 GYRKVQQVIENH 157

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 92  GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTAL 151
           G   +V+ ++ +  D +L ND G TALH A   G  +IV+ L+  G  +N+ D  G T L
Sbjct: 48  GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Query: 152 HRGASTGNSALCELLIEEGAEVDA 175
           H  AS  N  +C+ L+E GA V A
Sbjct: 108 HCAASCNNVQVCKFLVESGAAVFA 131

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 92  GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTAL 151
           G   +V+ ++ +  D +L ND G TALH A   G  +IV+ L+  G  +N+ D  G T L
Sbjct: 48  GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Query: 152 HRGASTGNSALCELLIEEGAEVDA 175
           H  AS  N  +C+ L+E GA V A
Sbjct: 108 HCAASCNNVQVCKFLVESGAAVFA 131

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 147 GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADV 206
           G TALH     G++ + + L++ G  V+A D  G TPL  A  C N +V   L+  GA V
Sbjct: 70  GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 82/170 (48%), Gaps = 5/170 (2%)
Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           D  + LH A   GH   V+ILL   +    VN V  +   P+ +A   G+   V +LL  
Sbjct: 35  DHVSPLHEACLGGHLSCVKILL---KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH 91
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
           GA V  ++D   + +H AA +G ++ V  LI+ G  I+ K     T L+        A  
Sbjct: 92  GASVQPESDLA-SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACV 150
Query: 164 ELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEG 213
           + L+E GA+V+   K   +PL       ++E+A LL+  GAD   ++ EG
Sbjct: 151 KKLLESGADVN-QGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEG 199

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 47/94 (50%)
Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 175
           + +H AA  G    +  LIS+G  +N       + LH     G+ +  ++L++ GA+V+ 
Sbjct: 5   SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 176 TDKAGQTPLMNAVICYNKEVALLLIRHGADVDVE 209
                 TPL NA +  + +   LL++HGA V  E
Sbjct: 65  VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE 98

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 46/79 (58%)
Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
           AA  G    V +L++ GADV  K+  G T LH AA  G L++V+LL+  GA +N++DK G
Sbjct: 13  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 148 CTALHRGASTGNSALCELL 166
            TA       GN  L E+L
Sbjct: 73  KTAFDISIDNGNEDLAEIL 91

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
           AA  G    V +L++ GA + +KDK G T LH  A  G+  + +LL+E GA+V+A DK G
Sbjct: 13  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 181 QTPLMNAVICYNKEVALLL 199
           +T    ++   N+++A +L
Sbjct: 73  KTAFDISIDNGNEDLAEIL 91

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 7/173 (4%)
Query: 42  NDDDRT---LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
           N  DRT    LH+AA+    +  + LL     AN+    D  G  P+H+A S     + +
Sbjct: 51  NQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQ---DNMGRTPLHAAVSADAQGVFQ 107
Query: 99  MLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST 157
           +L+ ++  D++ +   G T L  AA      ++E LI+  A +N+ D +G +ALH  A+ 
Sbjct: 108 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 167
Query: 158 GNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVED 210
            N     +L++ GA  D  +   +TPL  A    + E A +L+ H A+ D+ D
Sbjct: 168 NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 220

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 53/93 (56%)
Query: 92  GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTAL 151
           G++  V+  ++KG DVN   +GGR  LHYAA  G L+I+E L+ +GA IN+ DK   T L
Sbjct: 13  GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 72
Query: 152 HRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
                 G+ +  +LL+ +GA+       G T L
Sbjct: 73  LSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 120 YAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKA 179
           +A   G L  V+  +++G  +N   + G   LH  A  G   + E L+ +GA+++A DK 
Sbjct: 8   WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 67
Query: 180 GQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKAMLE 237
             TPL++AV   +     LL+  GAD  V+  +G T L    N        A KA+L+
Sbjct: 68  HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDN-------QAIKALLQ 118

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 7/173 (4%)
Query: 42  NDDDRT---LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
           N  DRT    LH+AA     +  + LL     AN+    D  G  P+H+A S     + +
Sbjct: 19  NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ---DNMGRTPLHAAVSADAQGVFQ 75
Query: 99  MLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST 157
           +L+ ++  D++ +   G T L  AA      ++E LI+  A +N+ D +G +ALH  A+ 
Sbjct: 76  ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 135
Query: 158 GNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVED 210
            N     +L++ GA  D  +   +TPL  A    + E A +L+ H A+ D+ D
Sbjct: 136 NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 188

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 7/173 (4%)
Query: 42  NDDDRT---LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
           N  DRT    LH+AA     +  + LL     AN+    D  G  P+H+A S     + +
Sbjct: 51  NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ---DNMGRTPLHAAVSADAQGVFQ 107
Query: 99  MLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST 157
           +L+ ++  D++ +   G T L  AA      ++E LI+  A +N+ D +G +ALH  A+ 
Sbjct: 108 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 167
Query: 158 GNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVED 210
            N     +L++ GA  D  +   +TPL  A    + E A +L+ H A+ D+ D
Sbjct: 168 NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 220

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 7/173 (4%)
Query: 42  NDDDRT---LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
           N  DRT    LH+AA     +  + LL     AN+    D  G  P+H+A S     + +
Sbjct: 52  NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ---DNMGRTPLHAAVSADAQGVFQ 108
Query: 99  MLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST 157
           +L+ ++  D++ +   G T L  AA      ++E LI+  A +N+ D +G +ALH  A+ 
Sbjct: 109 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 168
Query: 158 GNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVED 210
            N     +L++ GA  D  +   +TPL  A    + E A +L+ H A+ D+ D
Sbjct: 169 NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 221

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 50/81 (61%)
Query: 92  GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTAL 151
           G++  V+  ++KG DVN   +GGR  LHYAA  G L+I+E L+ +GA IN+ DK   T L
Sbjct: 18  GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Query: 152 HRGASTGNSALCELLIEEGAE 172
                 G+ +  +LL+ +GA+
Sbjct: 78  LSAVYEGHVSCVKLLLSKGAD 98

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 120 YAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKA 179
           +A   G L  V+  +++G  +N   + G   LH  A  G   + E L+ +GA+++A DK 
Sbjct: 13  WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 72
Query: 180 GQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKAMLE 237
             TPL++AV   +     LL+  GAD  V+  +G T      N        A KA+L+
Sbjct: 73  HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN-------QAIKALLQ 123

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 7/173 (4%)
Query: 42  NDDDRT---LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
           N  DRT    LH+AA     +  + LL     A +    D  G  P+H+A S     + +
Sbjct: 16  NQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQ---DNMGRTPLHAAVSADAQGVFQ 72
Query: 99  MLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST 157
           +LL ++  D++ +   G T L  AA      ++E LI+  A +N+ D +G +ALH  A+ 
Sbjct: 73  ILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAV 132
Query: 158 GNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVED 210
            N     +L++ GA  D  +   +TPL  A    + E A +L+ H A+ D+ D
Sbjct: 133 NNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITD 185

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 49/89 (55%)
Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
           AA  G + +V+  + +  D +  N+ G TALH A       IV+ LI+ GA +NS D  G
Sbjct: 28  AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDAT 176
            T LH  AS  ++ +C  L++ GA + AT
Sbjct: 88  WTPLHCAASCNDTVICMALVQHGAAIFAT 116

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 45/86 (52%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
           AA  G L++V+  +      +  ++ G TALH      N ++ + LI  GA V++ D  G
Sbjct: 28  AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 181 QTPLMNAVICYNKEVALLLIRHGADV 206
            TPL  A  C +  + + L++HGA +
Sbjct: 88  WTPLHCAASCNDTVICMALVQHGAAI 113

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 45/79 (56%)
Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
           AA  G    V +L++ GADV  K+  G T LH AA  G L++V+LL+  GA + ++DK G
Sbjct: 31  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 148 CTALHRGASTGNSALCELL 166
            TA       GN  L E+L
Sbjct: 91  KTAFDISIDNGNEDLAEIL 109

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
           AA  G    V +L++ GA + +KDK G T LH  A  G+  + +LL+E GA+V A DK G
Sbjct: 31  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 181 QTPLMNAVICYNKEVALLL 199
           +T    ++   N+++A +L
Sbjct: 91  KTAFDISIDNGNEDLAEIL 109

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 84  PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR-GAKINS 142
           P+H AA  GN++ +   L     VN  +  G TAL++A   G   IVE L ++   ++N 
Sbjct: 76  PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 143 KDKVGCTALHRGASTGNSALCELLIEEGAEVD 174
           ++K+G TALH  A  G + + +LL+ +GA  D
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTD 167

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           RT L V    G+PE+   LL    + ++    D  G+A IH AA  G +  ++ LL   A
Sbjct: 39  RTALQVM-KLGNPEIARRLLLRGANPDLK---DRTGFAVIHDAARAGQLDTLQTLLEFQA 94
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGA-KINSKDKVGCTALHRGASTGNSALCE 164
           DVN++++ G   LH AA +G L++VE L+   A  +  ++  G TA       G + +  
Sbjct: 95  DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS 154
Query: 165 LLIEEGA 171
           L+   GA
Sbjct: 155 LMQANGA 161

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
Query: 80  EGWA-PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
           E W   + SAA+ G++  +  LL    +VN +N  GRTAL      G  +I   L+ RGA
Sbjct: 3   EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGA 61
Query: 139 KINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALL 198
             + KD+ G   +H  A  G     + L+E  A+V+  D  G  PL  A    +  V   
Sbjct: 62  NPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 199 LIRHGA 204
           L++H A
Sbjct: 122 LVKHTA 127

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           RT L V    G+PE+   LL    + ++    D  G+A IH AA  G +  ++ LL   A
Sbjct: 39  RTALQVM-KLGNPEIARRLLLRGANPDLK---DRTGFAVIHDAARAGFLDTLQTLLENQA 94
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGA-KINSKDKVGCTALHRGASTGNSALCE 164
           DVN++++ G   LH AA +G L++VE L+   A  +  ++  G TA       G + +  
Sbjct: 95  DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS 154
Query: 165 LLIEEGA 171
           L+   GA
Sbjct: 155 LMQANGA 161

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
Query: 80  EGWA-PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
           E W   + SAA+ G++  +  LL    +VN +N  GRTAL      G  +I   L+ RGA
Sbjct: 3   EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGA 61
Query: 139 KINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALL 198
             + KD+ G   +H  A  G     + L+E  A+V+  D  G  PL  A    +  V   
Sbjct: 62  NPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 199 LIRHGA 204
           L++H A
Sbjct: 122 LVKHTA 127

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           RT L V    G+PE+   LL    + ++    D  G+A IH AA  G +  ++ LL   A
Sbjct: 39  RTALQVM-KLGNPEIARRLLLRGANPDLK---DRTGFAVIHDAARAGFLDTLQTLLEFQA 94
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGA-KINSKDKVGCTALHRGASTGNSALCE 164
           DVN++++ G   LH AA +G L++VE L+   A  +  ++  G TA       G + +  
Sbjct: 95  DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS 154
Query: 165 LLIEEGA 171
           L+   GA
Sbjct: 155 LMQANGA 161

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
Query: 80  EGWA-PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
           E W   + SAA+ G++  +  LL    +VN +N  GRTAL      G  +I   L+ RGA
Sbjct: 3   EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGA 61
Query: 139 KINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALL 198
             + KD+ G   +H  A  G     + L+E  A+V+  D  G  PL  A    +  V   
Sbjct: 62  NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 199 LIRHGA 204
           L++H A
Sbjct: 122 LVKHTA 127

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           RT L V    G+PE+   LL    + ++    D  G+A IH AA  G +  ++ LL   A
Sbjct: 39  RTALQVM-KLGNPEIARRLLLRGANPDLK---DRTGFAVIHDAARAGFLDTLQTLLEFQA 94
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGA-KINSKDKVGCTALHRGASTGNSALCE 164
           DVN++++ G   LH AA +G L++VE L+   A  +  ++  G TA       G + +  
Sbjct: 95  DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS 154
Query: 165 LLIEEGA 171
           L+   GA
Sbjct: 155 LMQANGA 161

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
Query: 80  EGWA-PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
           E W   + SAA+ G++  +  LL    +VN +N  GRTAL      G  +I   L+ RGA
Sbjct: 3   EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGA 61
Query: 139 KINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALL 198
             + KD+ G   +H  A  G     + L+E  A+V+  D  G  PL  A    +  V   
Sbjct: 62  NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 199 LIRHGA 204
           L++H A
Sbjct: 122 LVKHTA 127

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 7/146 (4%)
Query: 88  AASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV 146
           AA+ G+V  V  LL +     +  N  G+TAL      G   I   L+ +GA  N +D  
Sbjct: 15  AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTS 73
Query: 147 GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADV 206
           G + +H  A TG     ++L+E GA+V+  D  G  P+  AV   +  V   L    +D+
Sbjct: 74  GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL 132
Query: 207 DVEDKEGYT----VLGRASNDFRPIL 228
              D  G T     L R + D   IL
Sbjct: 133 HRRDARGLTPLELALQRGAQDLVDIL 158

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 7/146 (4%)
Query: 88  AASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV 146
           AA+ G+V  V  LL +     +  N  G+TAL      G   I   L+ +GA  N +D  
Sbjct: 9   AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTS 67
Query: 147 GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADV 206
           G + +H  A TG     ++L+E GA+V+  D  G  P+  AV   +  V   L    +D+
Sbjct: 68  GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL 126
Query: 207 DVEDKEGYT----VLGRASNDFRPIL 228
              D  G T     L R + D   IL
Sbjct: 127 HRRDARGLTPLELALQRGAQDLVDIL 152

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 3/131 (2%)
Query: 88  AASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV 146
           AA+ G+V  V  LL +     +  N  G+TAL           +ELL  +GA  N +D  
Sbjct: 15  AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELL-KQGASPNVQDAS 73
Query: 147 GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADV 206
           G + +H  A TG     ++L+E GA+V+A D  G  P+  A+   +  V   L    +D+
Sbjct: 74  GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDL 132
Query: 207 DVEDKEGYTVL 217
              D  G T L
Sbjct: 133 HHRDASGLTPL 143

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 3/131 (2%)
Query: 88  AASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV 146
           AA+ G+V  V  LL +     +  N  G+TAL           +ELL  +GA  N +D  
Sbjct: 17  AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELL-KQGASPNVQDAS 75
Query: 147 GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADV 206
           G + +H  A TG     ++L+E GA+V+A D  G  P+  A+   +  V   L    +D+
Sbjct: 76  GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDL 134
Query: 207 DVEDKEGYTVL 217
              D  G T L
Sbjct: 135 HHRDASGLTPL 145

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 97/234 (41%), Gaps = 57/234 (24%)
Query: 45  DRTLLHVAASCGHPEVVEILLSVDESANV------VNAVDEEGWAPIHSAASIGNVTIVE 98
           +RT+LH  AS    E  E L+ V E+         VNA D +   P+  A       +V 
Sbjct: 125 NRTVLHWIASNSSAEKSEDLI-VHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVA 183
Query: 99  MLLSKGADVNLKNDGGRTALHYAAS----------------KG-----------WLKIV- 130
            L   GAD  + N   R+ALH AA+                KG            L IV 
Sbjct: 184 YLXKAGADPTIYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVA 243
Query: 131 -----------ELLISRGAKI--------NSKDKVGCTALHRGASTGNSALCELLI-EEG 170
                      +LL+ +GAK+        +S+   G TALH  A   N  + + L+ E+G
Sbjct: 244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKG 303
Query: 171 AEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTV--LGRASN 222
           +  D  D+ G+TP+  A      EV   LI+ GA V+  D   +T   L +A+N
Sbjct: 304 SNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANN 357

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 101 LSKGADVNLKNDG--GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
           L+ GADVN  N G    T L  A +   L   E L+  GA +N  D  G   LH     G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 159 NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL 199
           ++ L  L ++ GA++ A D  G+ PL  A+   N ++  LL
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 155 ASTGNSAL-CELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEG 213
           A+  NS L CE L++ GA V+  D AG+ PL +A I  +  +A L ++ GAD+   D EG
Sbjct: 242 ATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEG 301
Query: 214 YTVL 217
              L
Sbjct: 302 RDPL 305

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 101 LSKGADVNLKNDG--GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
           L+ GADVN  N G    T L  A +   L   E L+  GA +N  D  G   LH     G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 159 NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL 199
           ++ L  L ++ GA++ A D  G+ PL  A+   N ++  LL
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 155 ASTGNSAL-CELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEG 213
           A+  NS L CE L++ GA V+  D AG+ PL +A I  +  +A L ++ GAD+   D EG
Sbjct: 242 ATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEG 301
Query: 214 YTVL 217
              L
Sbjct: 302 RDPL 305

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 101 LSKGADVNLKNDG--GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
           L+ GADVN  N G    T L  A +   L   E L+  GA +N  D  G   LH     G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 159 NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL 199
           ++ L  L ++ GA++ A D  G+ PL  A+   N ++  LL
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 155 ASTGNSAL-CELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEG 213
           A+  NS L CE L++ GA V+  D AG+ PL +A I  +  +A L ++ GAD+   D EG
Sbjct: 242 ATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEG 301
Query: 214 YTVL 217
              L
Sbjct: 302 RDPL 305

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 82/176 (46%), Gaps = 15/176 (8%)
Query: 56  GHPEVVEILLSVDESAN------VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG-ADVN 108
            HPE+V   L    + +      VVN  D  G   +H + S  N  +V+ LL  G   V+
Sbjct: 80  AHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVD 139
Query: 109 LKNDGGR-----TALHYAASKGWLKIVELLISRGAKINSK-DKVGCTALHRGASTGNSAL 162
            +N  G      TAL    ++  ++ V L + R   IN+K  + G TAL    S G   +
Sbjct: 140 KQNRAGYSPIMLTALATLKTQDDIETV-LQLFRLGNINAKASQAGQTALMLAVSHGRVDV 198
Query: 163 CELLIEEGAEVDATDKAGQTPLMNAVICYNKEVA-LLLIRHGADVDVEDKEGYTVL 217
            + L+   A+V+  D  G T LM A    +KE+A LLL     D+ + D++G T L
Sbjct: 199 VKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTAL 254

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 84  PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
           P  +AA   +   +  LL    DV+  ++ GRTAL + A  G  K V LL   GA ++ +
Sbjct: 48  PWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR 106
Query: 144 D-KVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
           D + G TALH  A      + E L+E GA+++  D+ G T L
Sbjct: 107 DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 148

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 140 INSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD-KAGQTPLMNAVICYNKEVALL 198
           +++ D+ G TAL   A  G+     LL E GA++D  D + G T L  A      EV   
Sbjct: 70  VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 129
Query: 199 LIRHGADVDVEDKEGYTVL 217
           L+  GAD++VED+ G T L
Sbjct: 130 LVELGADIEVEDERGLTAL 148

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 88/235 (37%), Gaps = 48/235 (20%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
            +D  T LH+A    H   ++ LL        ++  ++ G   +H AA +G  + VE L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 102 SKGADVNLKNDGGRTALHYAAS-KGWLKIVELLISRGA---------------------- 138
           + GA V +   GG TALH A   +       LL  R +                      
Sbjct: 66  AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125
Query: 139 ------------------------KINSKDKVGCTALHRGASTGNSALCELLIEEGAEVD 174
                                   ++ +++  G T LH      ++ +  LL + GA+++
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN 185
Query: 175 ATDKA-GQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPIL 228
             +   G+TPL  AV      V  LL++ GAD       G T LG A     PIL
Sbjct: 186 KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPIL 240

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 88/235 (37%), Gaps = 48/235 (20%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
            +D  T LH+A    H   ++ LL        ++  ++ G   +H AA +G  + VE L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 102 SKGADVNLKNDGGRTALHYAAS-KGWLKIVELLISRGA---------------------- 138
           + GA V +   GG TALH A   +       LL  R +                      
Sbjct: 66  AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125
Query: 139 ------------------------KINSKDKVGCTALHRGASTGNSALCELLIEEGAEVD 174
                                   ++ +++  G T LH      ++ +  LL + GA+++
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN 185
Query: 175 ATDKA-GQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPIL 228
             +   G+TPL  AV      V  LL++ GAD       G T LG A     PIL
Sbjct: 186 KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPIL 240

>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The Chloroplast Signal Recognition Particle Protein Cpsrp43 Length = 183

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 84  PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
           P  +AA   +   +  LL    DV+  ++ GRTAL + A  G  K V LL   GA ++ +
Sbjct: 47  PWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR 105
Query: 144 D-KVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
           D + G TALH  A      + E L+E GA+++  D+ G T L
Sbjct: 106 DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 147

>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The Chloroplast Signal Recognition Particle Protein Cpsrp43 Length = 183

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 140 INSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD-KAGQTPLMNAVICYNKEVALL 198
           +++ D+ G TAL   A  G+     LL E GA++D  D + G T L  A      EV   
Sbjct: 69  VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 128
Query: 199 LIRHGADVDVEDKEGYTVL 217
           L+  GAD++VED+ G T L
Sbjct: 129 LVELGADIEVEDERGLTAL 147

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 69/156 (44%), Gaps = 20/156 (12%)
Query: 82  W-APIHSAASIGNVTIVEMLLS-KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
           W +P+  AA   +V  +  LL  +G +V+ +   G TALH AA    L+   +L+    +
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 140 I-----NSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKA-------------GQ 181
           +      S+   G TALH      N  L   L+  GA V A                 G+
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122
Query: 182 TPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVL 217
            PL  A    ++E+  LLI HGAD+  +D  G TVL
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL 158

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Query: 91  IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTA 150
           +GN  I   LL +GA+ +LK+  G   +H AA  G+L  ++ L+   A +N +D  G   
Sbjct: 47  LGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP 106
Query: 151 LHRGASTGNSALCELLIEEGA-EVDATDKAGQTPLMNAVICYNKEVALLLIRHGA 204
           LH  A  G+  + E L++  A  V   +  G T    A +    EV  L+  +GA
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range Protein K1 Reveal A Novel Ankyrin Repeat Interaction Surface For K1s Function Length = 285

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 80  EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
           E   P+H AA++ +  IV++LL  G D +  +D G TAL+YA   G  + V+L + +  +
Sbjct: 61  ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWR 120
Query: 140 INSKDKVGC-TALHRGASTGNSALCELLIEE 169
           +    K G  T+ +      + ++    + E
Sbjct: 121 LXFYGKTGWKTSFYHAVXLNDVSIVSYFLSE 151

>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major Length = 364

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 33/194 (17%)
Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGN----VTIVEMLLS 102
           T LH+A   G  +  + L SV E  ++ +     G  PIH A         V +VE    
Sbjct: 55  TALHLACKFGCVDTAKYLASVGEVHSLWH-----GQKPIHLAVXANKTDLVVALVEGAKE 109
Query: 103 KGA------------DVN-----LKNDGGRTALHYAASKG--WLKIVELLISRGAKINSK 143
           +G             +VN     +K+  G+TALH+    G  +L+ +++L+  GA   +K
Sbjct: 110 RGQXPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEXIKILVQLGASPTAK 169
Query: 144 DKVGCTALHRGASTGNSALCELLI-----EEGAEVDATDKAGQTPLMNAVICYNKEVALL 198
           DK   T L R     N    +L       +    +D  +K G + L  A++   ++VA  
Sbjct: 170 DKADETPLXRAXEFRNREALDLXXDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAXR 229
Query: 199 LIRHGADVDVEDKE 212
            +  G DV+ ED E
Sbjct: 230 FVEXGIDVNXEDNE 243

>pdb|3T8K|A Chain A, The Crystal Structure Of A Functionally Unknown Protein Lebu_0176 From Leptotrichia Buccalis C-1013-B Length = 186

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 18/169 (10%)
Query: 75  NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN---LKNDGGRTALHYAASKGWLKIVE 131
           NA  E  +  + +AA +G       L  KG +     LK++     L     +   KI  
Sbjct: 2   NAXSE--YRTVSAAAXLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISX 59
Query: 132 LLISRGAKINSKDKVGCT---ALHRGAS---TGNSALCELLIEEGAEVDATDKAGQTPLM 185
            LI++GA I S+ K G T    L +G     TG + LC++ +E+GA++ A  K  +  + 
Sbjct: 60  FLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVF 119
Query: 186 NAVICY----NKEVA---LLLIRHGADVDVEDKEGYTVLGRASNDFRPI 227
             +  Y    N+ +    L+  + G  + ++DK G T L       +PI
Sbjct: 120 KNIFNYFVDENEXIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPI 168

>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold Length = 135

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 57/111 (51%)
Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN 159
           L ++  D++ +   G T L  AA      ++E LI+  A +N+ D +G +ALH  A+  N
Sbjct: 1   LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVED 210
                +L++ GA  D  +   +TPL  A    + E A +L+ H A+ D+ D
Sbjct: 61  VDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITD 111

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	238
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-70
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-54
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-52
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-37
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-67
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-66
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-65
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-62
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-43
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-34
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-21
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-66
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-56
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-52
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-66
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-64
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-61
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-66
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-59
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-48
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-17
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-66
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-54
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-52
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-39
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-66
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-63
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-41
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-65
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-63
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-63
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-57
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-43
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-65
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-63
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-62
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-35
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-64
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-61
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-34
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-15
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-64
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-59
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-56
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-44
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-64
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-54
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-64
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-63
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-58
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-56
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-48
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-44
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-63
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-54
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-48
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-63
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-61
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-32
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-63
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-60
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-57
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-51
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-34
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-61
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-52
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-46
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-61
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-49
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-47
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-37
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-22
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-61
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-54
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-48
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-27
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-60
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-57
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-47
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-59
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-55
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-49
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-48
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-45
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-34
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-59
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-55
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-52
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-41
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-38
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-19
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-58
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-54
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-46
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-31
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-58
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-58
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-50
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-48
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-42
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-36
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-58
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-53
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-53
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	9e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-58
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-56
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-54
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-53
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-57
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-57
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-52
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-42
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-34
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-23
2rfa_A	232	Transient receptor potential cation channel subfa	2e-57
2rfa_A	232	Transient receptor potential cation channel subfa	6e-54
2rfa_A	232	Transient receptor potential cation channel subfa	1e-31
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-57
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-47
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-34
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-56
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-54
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-51
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-47
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-41
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-17
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-55
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-52
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-45
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-28
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-17
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-55
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-49
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-43
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-55
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-46
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-44
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-15
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-13
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-54
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-48
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-41
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-33
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-21
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-51
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-48
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-45
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-34
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-51
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-44
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-29
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-49
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-45
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-41
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	9e-12
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-49
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-47
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-38
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-36
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-21
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-49
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-48
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-40
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-35
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-49
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-46
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-42
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-33
2etb_A	256	Transient receptor potential cation channel subfam	1e-45
2etb_A	256	Transient receptor potential cation channel subfam	1e-29
2etb_A	256	Transient receptor potential cation channel subfam	3e-17
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-45
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-43
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-41
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-26
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-44
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-43
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-38
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-30
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-42
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-36
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-29
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-19
2pnn_A	273	Transient receptor potential cation channel subfa	4e-41
2pnn_A	273	Transient receptor potential cation channel subfa	1e-37
2pnn_A	273	Transient receptor potential cation channel subfa	4e-31
2pnn_A	273	Transient receptor potential cation channel subfa	3e-25
2pnn_A	273	Transient receptor potential cation channel subfa	1e-21
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-37
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-34
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-25
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-22
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	8e-17
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-36
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-35
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-32
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-35
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-34
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-29
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-26
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-28
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-25
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-14
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	6e-20
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-14
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-18
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-18
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-17
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	7e-13
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-18
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-17
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-15
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-15
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	9e-15
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-13
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-13

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  211 bits (540), Expect = 4e-70
 Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 2/171 (1%)

Query: 45  DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG 104
           D   +H  A+ G  + ++  L      N+VN  DE G+ P+  A++ G +  V  LL  G
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKG--DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG 59

Query: 105 ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCE 164
           AD ++      +AL  A++ G+  IV LL+ R   IN  D  G T L       +    E
Sbjct: 60  ADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVE 119

Query: 165 LLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYT 215
            L+  GA++     +G TP+  AV    ++V  ++  H   +   +     
Sbjct: 120 ALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  172 bits (438), Expect = 1e-54
 Identities = 34/143 (23%), Positives = 67/143 (46%), Gaps = 3/143 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            ++   T L  A++ G  E V  LL     A+  + + +E  + +  A++ G   IV +L
Sbjct: 32  PDERGFTPLIWASAFGEIETVRFLLEWG--ADP-HILAKERESALSLASTGGYTDIVGLL 88

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L +  D+N+ +  G T L YA     +K VE L++RGA + ++   G T +    + G  
Sbjct: 89  LERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYR 148

Query: 161 ALCELLIEEGAEVDATDKAGQTP 183
            + +++     ++  ++     P
Sbjct: 149 KVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  167 bits (425), Expect = 1e-52
 Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 1/142 (0%)

Query: 81  GWAPIHSAASIGNVTIVEMLLSKGAD-VNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
               IH  A+ G +  ++  L KG + VN  ++ G T L +A++ G ++ V  L+  GA 
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 140 INSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL 199
            +   K   +AL   ++ G + +  LL+E   +++  D  G TPL+ AV   + +    L
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121

Query: 200 IRHGADVDVEDKEGYTVLGRAS 221
           +  GAD+  E   GYT +  A 
Sbjct: 122 LARGADLTTEADSGYTPMDLAV 143

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  127 bits (322), Expect = 3e-37
 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 1/110 (0%)

Query: 113 GGRTALHYAASKGWLKIVELLISRGA-KINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
           G   ++H  A++G L  ++  + +G   +N  D+ G T L   ++ G       L+E GA
Sbjct: 1   GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60

Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
           +     K  ++ L  A      ++  LL+    D+++ D  G T L  A 
Sbjct: 61  DPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAV 110

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  211 bits (540), Expect = 9e-67
 Identities = 69/220 (31%), Positives = 104/220 (47%), Gaps = 9/220 (4%)

Query: 6   DQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVV 61
           +  +        L  AA  G   T  +L +++   S +       T LHVAA  G   V 
Sbjct: 105 NPNLATTAGHTPLHIAAREGHVETVLALLEKEA--SQACMTKKGFTPLHVAAKYGKVRVA 162

Query: 62  EILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA 121
           E+LL  D  A+  NA  + G  P+H A    N+ IV++LL +G   +     G T LH A
Sbjct: 163 ELLLERD--AHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIA 219

Query: 122 ASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQ 181
           A +  +++   L+  G   N++   G T LH  A  G++ +  LL+ + A  +  +K+G 
Sbjct: 220 AKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGL 279

Query: 182 TPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
           TPL       +  VA +LI+HG  VD   + GYT L  AS
Sbjct: 280 TPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVAS 319

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  211 bits (539), Expect = 1e-66
 Identities = 74/222 (33%), Positives = 102/222 (45%), Gaps = 11/222 (4%)

Query: 4   DIDQTIKDKD--LFKAAETGDSSTFKSLSKQQLLK--SLSLRNDDDRTLLHVAASCGHPE 59
                 +     L  A+  G     K+L    L +  S ++ N    T LH+AA  GH E
Sbjct: 6   SGGGGGESGLTPLHVASFMGHLPIVKNL----LQRGASPNVSNVKVETPLHMAARAGHTE 61

Query: 60  VVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALH 119
           V + LL     A V NA  ++   P+H AA IG+  +V++LL   A+ NL    G T LH
Sbjct: 62  VAKYLLQ--NKAKV-NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLH 118

Query: 120 YAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKA 179
            AA +G ++ V  L+ + A      K G T LH  A  G   + ELL+E  A  +A  K 
Sbjct: 119 IAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN 178

Query: 180 GQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
           G TPL  AV   N ++  LL+  G         GYT L  A+
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAA 220

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  208 bits (531), Expect = 2e-65
 Identities = 59/181 (32%), Positives = 93/181 (51%), Gaps = 3/181 (1%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
              +  T LH+AA     EV   LL      +  NA   +G  P+H AA  G+  +V +L
Sbjct: 208 PAWNGYTPLHIAAKQNQVEVARSLLQYG--GSA-NAESVQGVTPLHLAAQEGHAEMVALL 264

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           LSK A+ NL N  G T LH  A +G + + ++LI  G  +++  ++G T LH  +  GN 
Sbjct: 265 LSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNI 324

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRA 220
            L + L++  A+V+A  K G +PL  A    + ++  LL+++GA  +    +G T L  A
Sbjct: 325 KLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIA 384

Query: 221 S 221
            
Sbjct: 385 K 385

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  199 bits (509), Expect = 4e-62
 Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 6/180 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +    T LH+AA  GH E+V +LLS    AN  N  ++ G  P+H  A  G+V + ++L
Sbjct: 241 ESVQGVTPLHLAAQEGHAEMVALLLSKQ--ANG-NLGNKSGLTPLHLVAQEGHVPVADVL 297

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           +  G  V+     G T LH A+  G +K+V+ L+   A +N+K K+G + LH+ A  G++
Sbjct: 298 IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHT 357

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIR---HGADVDVEDKEGYTVL 217
            +  LL++ GA  +     G TPL  A       V  +L       + V V DK   +  
Sbjct: 358 DIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFP 417

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  151 bits (384), Expect = 1e-43
 Identities = 38/120 (31%), Positives = 60/120 (50%)

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
           S G       + G T LH A+  G L IV+ L+ RGA  N  +    T LH  A  G++ 
Sbjct: 2   SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE 61

Query: 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
           + + L++  A+V+A  K  QTPL  A    +  +  LL+ + A+ ++    G+T L  A+
Sbjct: 62  VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAA 121

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  126 bits (320), Expect = 2e-34
 Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 15/135 (11%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
                 T LHVA+  G+ ++V+ LL     A+V NA  + G++P+H AA  G+  IV +L
Sbjct: 307 TTRMGYTPLHVASHYGNIKLVKFLLQHQ--ADV-NAKTKLGYSPLHQAAQQGHTDIVTLL 363

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELL---ISRGAKINSKDKVGCTALHRGAST 157
           L  GA  N  +  G T L  A   G++ + ++L       + +   DK   +        
Sbjct: 364 LKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPE----- 418

Query: 158 GNSALCELLIEEGAE 172
                 + +++   +
Sbjct: 419 ----TVDEILDVSED 429

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 89.1 bits (222), Expect = 9e-21
 Identities = 26/148 (17%), Positives = 56/148 (37%), Gaps = 23/148 (15%)

Query: 4   DIDQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPE 59
            +D     +     L  A+  G+    K L + Q    ++ +     + LH AA  GH +
Sbjct: 303 MVD--ATTRMGYTPLHVASHYGNIKLVKFLLQHQA--DVNAKTKLGYSPLHQAAQQGHTD 358

Query: 60  VVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML---LSKGADVNLKNDGGRT 116
           +V +LL     A+  N V  +G  P+  A  +G +++ ++L     + + V + +    +
Sbjct: 359 IVTLLLKNG--ASP-NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMS 415

Query: 117 ALHYAASKGWLKIVELLISRGAKINSKD 144
                        V+ ++        + 
Sbjct: 416 FPE---------TVDEILDVSEDEGEEL 434

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  202 bits (517), Expect = 1e-66
 Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 2/166 (1%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           + +    +      G+   V + L    + N +N  D+ G++P+H A   G   +VEML+
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLD--NTENDLNQGDDHGFSPLHWACREGRSAVVEMLI 59

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
            +GA +N+ N G  T LH AAS G   IV+ L+   A IN+ ++ G   LH     G   
Sbjct: 60  MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQ 119

Query: 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
           + E L+  GA V   +K G+ P+  A     + +     + G +++
Sbjct: 120 VAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN 165

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  175 bits (446), Expect = 8e-56
 Identities = 45/145 (31%), Positives = 74/145 (51%), Gaps = 1/145 (0%)

Query: 78  DEEGWAPIHSAASIGNVTIVEMLLSKGA-DVNLKNDGGRTALHYAASKGWLKIVELLISR 136
             E    I +    GN   V + L     D+N  +D G + LH+A  +G   +VE+LI R
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 137 GAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVA 196
           GA+IN  ++   T LH  AS G+  + + L++  A+++A ++ G  PL  A      +VA
Sbjct: 62  GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVA 121

Query: 197 LLLIRHGADVDVEDKEGYTVLGRAS 221
             L+ +GA V + +K G   + +A 
Sbjct: 122 EDLVANGALVSICNKYGEMPVDKAK 146

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  165 bits (421), Expect = 4e-52
 Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 3/137 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +D   + LH A   G   VVE+L+     A + N ++     P+H AAS G+  IV+ L
Sbjct: 35  GDDHGFSPLHWACREGRSAVVEMLIMRG--ARI-NVMNRGDDTPLHLAASHGHRDIVQKL 91

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L   AD+N  N+ G   LHYA   G  ++ E L++ GA ++  +K G   + +  +    
Sbjct: 92  LQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRE 151

Query: 161 ALCELLIEEGAEVDATD 177
            L E   + G  ++   
Sbjct: 152 LLRERAEKMGQNLNRIP 168

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  204 bits (523), Expect = 1e-66
 Identities = 62/223 (27%), Positives = 99/223 (44%), Gaps = 14/223 (6%)

Query: 10  KDKD----LFKAAETGDSSTFKSLSKQQLLK--SLSLRNDDDRTLLHVAASCGHPEVVEI 63
            D+D    L  A   G+      L          L + N+  +T LH+A     P VV +
Sbjct: 5   ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL 64

Query: 64  LLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA----DVNLKNDGGRTALH 119
           L++    A+   A+D  G    H A    + T +  LL   A    D+  +N  G TALH
Sbjct: 65  LVTAG--ASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121

Query: 120 YAASKGWLKIVELLISRGAKINSKD-KVGCTALHRGASTGNSALCELLIEEGAEVDATDK 178
            A +    + V+LL+ RGA I++ D K G + L       + ++ +LL++ GA V+A   
Sbjct: 122 VAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY 181

Query: 179 AGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
           +G + L +A       +   L+R GAD  +++    T L  A 
Sbjct: 182 SGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR 224

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  199 bits (510), Expect = 1e-64
 Identities = 52/191 (27%), Positives = 96/191 (50%), Gaps = 8/191 (4%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEILLSVDES--ANVVNAVDEEGWAPIHSAASIGNVT 95
            +  ++D  T LH+A   G+   V  L+++ +      ++  +     P+H A      +
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLAVITTLPS 60

Query: 96  IVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK----INSKDKVGCTAL 151
           +V +L++ GA     +  G+TA H A        +  L+   A     + +++  G TAL
Sbjct: 61  VVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 120

Query: 152 HRGASTGNSALCELLIEEGAEVDATD-KAGQTPLMNAVICYNKEVALLLIRHGADVDVED 210
           H   +T      +LL+E GA++DA D K+G++PL++AV   +  +  LL++HGA+V+ + 
Sbjct: 121 HVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQM 180

Query: 211 KEGYTVLGRAS 221
             G + L  AS
Sbjct: 181 YSGSSALHSAS 191

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  189 bits (484), Expect = 9e-61
 Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 14/209 (6%)

Query: 4   DIDQTIKDKD----LFKAAETGDSSTFKSLSKQQLLK--SLSLRNDDDRTLLHVAASCGH 57
           ++D  I +      L  A  T   S  + L    +    S    +   +T  H+A     
Sbjct: 38  ELD--IYNNLRQTPLHLAVITTLPSVVRLL----VTAGASPMALDRHGQTAAHLACEHRS 91

Query: 58  PEVVEILLSVDESANV-VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGR 115
           P  +  LL       + + A + +G   +H A +      V++LL +GAD++  +   GR
Sbjct: 92  PTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGR 151

Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 175
           + L +A     L +V+LL+  GA +N++   G +ALH  +  G   L   L+  GA+   
Sbjct: 152 SPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL 211

Query: 176 TDKAGQTPLMNAVICYNKEVALLLIRHGA 204
            +    TPLM A      ++        A
Sbjct: 212 KNCHNDTPLMVARSRRVIDILRGKATRPA 240

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  203 bits (520), Expect = 2e-66
 Identities = 67/186 (36%), Positives = 100/186 (53%), Gaps = 4/186 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ D R  LH + S    E+   LLS  E+ N+ +  D+ GW P H A S+GN+ +V+ L
Sbjct: 32  KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91

Query: 101 LSK--GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
             +    D+N   + G T LH A  K W ++ + LI  GA +  KDK     LHR AS G
Sbjct: 92  YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG 151

Query: 159 NSALCELLIEEG-AEVDATDKAGQTPLMNAVICYNKEVALLLI-RHGADVDVEDKEGYTV 216
           +  L ELL   G + V+  DK G TPL +A+   + + A+LL+ ++GA+ D+ D +G   
Sbjct: 152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA 211

Query: 217 LGRASN 222
              A N
Sbjct: 212 EDVALN 217

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  184 bits (471), Expect = 7e-59
 Identities = 58/183 (31%), Positives = 82/183 (44%), Gaps = 10/183 (5%)

Query: 46  RTLLHVAASCGH-PEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG 104
              LH A       +V E+L S    + +    D++G  P+H + S     I   LLSK 
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKP--SLL-LQKDQDGRIPLHWSVSFQAHEITSFLLSKM 59

Query: 105 ADVNLKN---DGGRTALHYAASKGWLKIVELLISR--GAKINSKDKVGCTALHRGASTGN 159
            +VNL +   D G T  H A S G L++V+ L  R     +N     G T LH       
Sbjct: 60  ENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKW 119

Query: 160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHG-ADVDVEDKEGYTVLG 218
             + + LIE GA V   DK  Q PL  A    + ++  LL   G + V+ +DK+G+T L 
Sbjct: 120 FEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLF 179

Query: 219 RAS 221
            A 
Sbjct: 180 HAL 182

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  157 bits (401), Expect = 2e-48
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 6/147 (4%)

Query: 81  GWAPIHSAASIGNV-TIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
              P+H A        + E+L SK + +  K+  GR  LH++ S    +I   L+S+   
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 140 IN---SKDKVGCTALHRGASTGNSALCELLIE--EGAEVDATDKAGQTPLMNAVICYNKE 194
           +N     D  G T  H   S GN  + + L +     +++     G T L  AV     E
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121

Query: 195 VALLLIRHGADVDVEDKEGYTVLGRAS 221
           V+  LI +GA V ++DK     L RA+
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAA 148

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 77.1 bits (191), Expect = 2e-17
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 146 VGCTALHRGASTGNSAL-CELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGA 204
           +    LH+           ELL  + + +   D+ G+ PL  +V     E+   L+    
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60

Query: 205 DV---DVEDKEGYTVLGRAS 221
           +V   D  D  G+T    A 
Sbjct: 61  NVNLDDYPDDSGWTPFHIAC 80

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  201 bits (513), Expect = 4e-66
 Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 3/167 (1%)

Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
              +H  A+ G    +   +  +    + N  DEEG+ P+  AA+ G + +VE LL  GA
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQE--NVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60

Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
           D  L   G  +AL  A SKG+  IV++L+  G  +N  D  G T L       +    ++
Sbjct: 61  DPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKM 120

Query: 166 LIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKE 212
           L+E GA+      +G   +  AV    + V  ++  H   +    KE
Sbjct: 121 LLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  171 bits (437), Expect = 1e-54
 Identities = 38/141 (26%), Positives = 68/141 (48%)

Query: 81  GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
               +H  A+ G +  +   + +   +N  ++ G T L +AA+ G + +VE L+  GA  
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62

Query: 141 NSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLI 200
               K   +AL    S G + + ++L++ G +V+  D  G TPL+ AV   + +   +L+
Sbjct: 63  QLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL 122

Query: 201 RHGADVDVEDKEGYTVLGRAS 221
             GAD  +E   GY  +  A 
Sbjct: 123 ESGADPTIETDSGYNSMDLAV 143

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  165 bits (420), Expect = 5e-52
 Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +++  T L  AA+ G   VVE LL     A+    + +   + +  A S G   IV+ML
Sbjct: 32  TDEEGFTPLMWAAAHGQIAVVEFLLQNG--AD-PQLLGKGRESALSLACSKGYTDIVKML 88

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L  G DVN  +  G T L YA     +K V++L+  GA    +   G  ++    + G  
Sbjct: 89  LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 148

Query: 161 ALCELLIEEGAEVDATDK 178
           ++ +++     ++    K
Sbjct: 149 SVQQVIESHLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  131 bits (333), Expect = 6e-39
 Identities = 29/109 (26%), Positives = 49/109 (44%)

Query: 113 GGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE 172
               ++H  A++G +  +   I +   IN  D+ G T L   A+ G  A+ E L++ GA+
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61

Query: 173 VDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
                K  ++ L  A      ++  +L+  G DV+  D  G T L  A 
Sbjct: 62  PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAV 110

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  202 bits (517), Expect = 9e-66
 Identities = 61/182 (33%), Positives = 96/182 (52%), Gaps = 4/182 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            ++D RT L  AA   H E V+ L+     A V +  D EG   +H AA  G+  +V+ L
Sbjct: 40  CSEDQRTPLMEAAENNHLEAVKYLIKAG--ALV-DPKDAEGSTCLHLAAKKGHYEVVQYL 96

Query: 101 LSKGA-DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN 159
           LS G  DVN ++DGG T + +A     + +V+LL+S+G+ IN +D      LH  A +G 
Sbjct: 97  LSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGC 156

Query: 160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGR 219
             + E+L+    ++ A +  G +PL  A      +  +L +   +DV +++KEG T L  
Sbjct: 157 VDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQC 216

Query: 220 AS 221
           AS
Sbjct: 217 AS 218

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  196 bits (500), Expect = 4e-63
 Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 2/165 (1%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ +  T LH+AA  GH EVV+ LLS       VN  D+ GW P+  A    +V +V++L
Sbjct: 73  KDAEGSTCLHLAAKKGHYEVVQYLLSNG--QMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           LSKG+D+N++++     LH+AA  G + I E+L++    +++ +  G + LH  A     
Sbjct: 131 LSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRY 190

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGAD 205
               L +   ++V   +K G+TPL  A +      AL + +   D
Sbjct: 191 DCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  139 bits (354), Expect = 3e-41
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 1/118 (0%)

Query: 105 ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCE 164
            +  +++   R+ LH AA  G + I  +L+  GA I++  +   T L   A   +    +
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61

Query: 165 LLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGA-DVDVEDKEGYTVLGRAS 221
            LI+ GA VD  D  G T L  A    + EV   L+ +G  DV+ +D  G+T +  A+
Sbjct: 62  YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT 119

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  201 bits (515), Expect = 1e-65
 Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 4/182 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +    T LH+AA     +  + LL     A+  N  D  G  P+H+A S     + ++L
Sbjct: 21  TDRTGETALHLAARYSRSDAAKRLLEAS--ADA-NIQDNMGRTPLHAAVSADAQGVFQIL 77

Query: 101 LSKGA-DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN 159
           +   A D++ +   G T L  AA      ++E LI+  A +N+ D +G +ALH  A+  N
Sbjct: 78  IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 137

Query: 160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGR 219
                +L++ GA  D  +   +TPL  A    + E A +L+ H A+ D+ D         
Sbjct: 138 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 197

Query: 220 AS 221
           A 
Sbjct: 198 AQ 199

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  196 bits (500), Expect = 2e-63
 Identities = 44/166 (26%), Positives = 79/166 (47%), Gaps = 2/166 (1%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +++  RT LH A S     V +IL+     A  ++A   +G  P+  AA +    ++E L
Sbjct: 54  QDNMGRTPLHAAVSADAQGVFQILIRNR--ATDLDARMHDGTTPLILAARLAVEGMLEDL 111

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           ++  ADVN  +D G++ALH+AA+   +    +L+  GA  + ++    T L   A  G+ 
Sbjct: 112 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSY 171

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADV 206
              ++L++  A  D TD   + P   A    + ++  LL  +    
Sbjct: 172 ETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR 217

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  194 bits (495), Expect = 1e-62
 Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 3/167 (1%)

Query: 56  GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR 115
             P V+   +     A++ N  D  G   +H AA        + LL   AD N++++ GR
Sbjct: 2   DAPAVISDFIYQG--ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR 59

Query: 116 TALHYAASKGWLKIVELLISRGAK-INSKDKVGCTALHRGASTGNSALCELLIEEGAEVD 174
           T LH A S     + ++LI   A  ++++   G T L   A      + E LI   A+V+
Sbjct: 60  TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 119

Query: 175 ATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
           A D  G++ L  A    N + A++L+++GA+ D+++    T L  A+
Sbjct: 120 AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA 166

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  124 bits (313), Expect = 3e-35
 Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +D  ++ LH AA+  + +   +LL     AN  +  +     P+  AA  G+    ++L
Sbjct: 121 VDDLGKSALHWAAAVNNVDAAVVLLKNG--ANK-DMQNNREETPLFLAAREGSYETAKVL 177

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALH 152
           L   A+ ++ +   R     A  +    IV LL       +         LH
Sbjct: 178 LDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS-------PQLH 222

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  200 bits (511), Expect = 1e-64
 Identities = 57/236 (24%), Positives = 102/236 (43%), Gaps = 22/236 (9%)

Query: 3   MDIDQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSL------------SLRNDDDR 46
           MD++  ++  D    L  A+ +G      +  +++   ++            +  +    
Sbjct: 1   MDVN--VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGE 58

Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA- 105
           T LH+AA     +  + LL     A+  N  D  G  P+H+A S     + ++L+   A 
Sbjct: 59  TALHLAARYSRSDAAKRLLEAS--ADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 115

Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
           D++ +   G T L  AA      ++E LI+  A +N+ D +G +ALH  A+  N     +
Sbjct: 116 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 175

Query: 166 LIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
           L++ GA  D  +   +TPL  A    + E A +L+ H A+ D+ D         A 
Sbjct: 176 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQ 231

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  192 bits (490), Expect = 2e-61
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 2/165 (1%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +++  RT LH A S     V +IL+     A  ++A   +G  P+  AA +    ++E L
Sbjct: 86  QDNMGRTPLHAAVSADAQGVFQILIRNR--ATDLDARMHDGTTPLILAARLAVEGMLEDL 143

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           ++  ADVN  +D G++ALH+AA+   +    +L+  GA  + ++    T L   A  G+ 
Sbjct: 144 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSY 203

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGAD 205
              ++L++  A  D TD   + P   A    + ++  LL      
Sbjct: 204 ETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHH 248

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  122 bits (309), Expect = 2e-34
 Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 3/103 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +D  ++ LH AA+  + +   +LL     AN  +  +     P+  AA  G+    ++L
Sbjct: 153 VDDLGKSALHWAAAVNNVDAAVVLLKNG--ANK-DMQNNREETPLFLAAREGSYETAKVL 209

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
           L   A+ ++ +   R     A  +    IV LL       +  
Sbjct: 210 LDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHH 252

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 72.9 bits (180), Expect = 1e-15
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +N+ + T L +AA  G  E  ++LL     AN  +  D     P   A    +  IV +L
Sbjct: 186 QNNREETPLFLAAREGSYETAKVLLDHF--ANR-DITDHMDRLPRDIAQERMHHDIVRLL 242

Query: 101 LSKGADVNLKN 111
             +    +  +
Sbjct: 243 DLEHHHHHHHH 253

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  199 bits (508), Expect = 2e-64
 Identities = 56/184 (30%), Positives = 91/184 (49%), Gaps = 6/184 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD-EEGWAPIHSAASIGNVTIVEM 99
            + ++ TLLH AA     ++V+  +S    A V + +  +    P+H A   G++++V  
Sbjct: 38  PDKENVTLLHWAAINNRIDLVKYYISKG--AIV-DQLGGDLNSTPLHWATRQGHLSMVVQ 94

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN 159
           L+  GAD +L +  G + +H AA  G   IV  LI++G  ++  D+ G T L   A   +
Sbjct: 95  LMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH 154

Query: 160 SALC-ELLIEEGAEVDATDKA-GQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVL 217
           S     LL+     V+  DK    T L  AV+  N  V  LL+  GA+VD ++ +G + L
Sbjct: 155 SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESAL 214

Query: 218 GRAS 221
             A 
Sbjct: 215 DLAK 218

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  186 bits (475), Expect = 2e-59
 Identities = 54/171 (31%), Positives = 83/171 (48%), Gaps = 5/171 (2%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
            D + T LH A   GH  +V  L+     A+  + +D EG + IH AA  G+ +IV  L+
Sbjct: 73  GDLNSTPLHWATRQGHLSMVVQLMKYG--ADP-SLIDGEGCSCIHLAAQFGHTSIVAYLI 129

Query: 102 SKGADVNLKNDGGRTALHYAASKG-WLKIVELLISRGAKINSKDKV-GCTALHRGASTGN 159
           +KG DV++ +  G T L +AA +   +    LL++    +N  DK    TALH     GN
Sbjct: 130 AKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGN 189

Query: 160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVED 210
           + +  LL+E GA VDA +  G++ L  A    N  +   L         ++
Sbjct: 190 TTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  177 bits (452), Expect = 8e-56
 Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 1/149 (0%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           +  +D+     I  A   G       L+  G DV   +    T LH+AA    + +V+  
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 134 ISRGAKINSKDK-VGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYN 192
           IS+GA ++     +  T LH     G+ ++   L++ GA+    D  G + +  A    +
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH 121

Query: 193 KEVALLLIRHGADVDVEDKEGYTVLGRAS 221
             +   LI  G DVD+ D+ G T L  A+
Sbjct: 122 TSIVAYLIAKGQDVDMMDQNGMTPLMWAA 150

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  149 bits (378), Expect = 1e-44
 Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 5/139 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT-IVEM 99
            + +  + +H+AA  GH  +V  L++     +V + +D+ G  P+  AA   +      +
Sbjct: 105 IDGEGCSCIHLAAQFGHTSIVAYLIAKG--QDV-DMMDQNGMTPLMWAAYRTHSVDPTRL 161

Query: 100 LLSKGADVNLK-NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
           LL+    VNL       TALH+A   G   ++ LL+  GA +++++  G +AL       
Sbjct: 162 LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRK 221

Query: 159 NSALCELLIEEGAEVDATD 177
           N  +   L E        +
Sbjct: 222 NVWMINHLQEARQAKGYDN 240

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  197 bits (503), Expect = 4e-64
 Identities = 51/189 (26%), Positives = 92/189 (48%), Gaps = 10/189 (5%)

Query: 40  LRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
           ++  +   LL  A      +V EIL        V + VD EG  P++ A    ++ I + 
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTT--YQV-DEVDTEGNTPLNIAVHNNDIEIAKA 57

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK-INSKDKVGCTALHRGASTG 158
           L+ +GAD+NL+N    +   YA ++G  +I+  ++      +N  ++ G  AL   A  G
Sbjct: 58  LIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKG 117

Query: 159 NSALCELLIEEG-AEVDATDKAGQTPLMNAVICYN-----KEVALLLIRHGADVDVEDKE 212
           +    +LL+E+G  ++D  +  G T L+ AV         +++  LL+ +GAD  ++D  
Sbjct: 118 HIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNS 177

Query: 213 GYTVLGRAS 221
           G T +  A+
Sbjct: 178 GRTAMDYAN 186

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  171 bits (436), Expect = 5e-54
 Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 10/169 (5%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            + +  T L++A      E+ + L+     A++ N  +    +P   A + G   I+  +
Sbjct: 35  VDTEGNTPLNIAVHNNDIEIAKALIDRG--ADI-NLQNSISDSPYLYAGAQGRTEILAYM 91

Query: 101 LSKGA-DVNLKNDGGRTALHYAASKGWLKIVELLISRG-AKINSKDKVGCTALHRGASTG 158
           L     D+N  N  G  AL  AA KG +  V+LL+  G   I+ ++  G TAL       
Sbjct: 92  LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLR 151

Query: 159 NS-----ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRH 202
                   + +LL+E GA+    D +G+T +  A      E++ +L ++
Sbjct: 152 EGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  199 bits (508), Expect = 9e-64
 Identities = 55/182 (30%), Positives = 84/182 (46%), Gaps = 5/182 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
              D  + LH A   GH   V+ILL     A V N V  +   P+ +A   G+   V +L
Sbjct: 88  ITADHVSPLHEACLGGHLSCVKILLKHG--AQV-NGVTADWHTPLFNACVSGSWDCVNLL 144

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L  GA V  ++D   + +H AA +G ++ V  LI+ G  I+ K     T L+        
Sbjct: 145 LQHGASVQPESDL-ASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQR 203

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRA 220
           A  + L+E GA+V+   K   +PL   V   ++E+A LL+  GAD   ++ EG   +   
Sbjct: 204 ACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELV 262

Query: 221 SN 222
             
Sbjct: 263 PP 264

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  196 bits (502), Expect = 6e-63
 Identities = 48/180 (26%), Positives = 73/180 (40%), Gaps = 5/180 (2%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
              D + +H AA  GH   +  L+S       VN +  +  +P+H A   G+++ V++LL
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLISQG--WA-VNIITADHVSPLHEACLGGHLSCVKILL 112

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
             GA VN       T L  A   G    V LL+  GA +  +     + +H  A  G+  
Sbjct: 113 KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAARRGHVE 171

Query: 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
               LI  G  +D       TPL  A     +     L+  GADV+ + K   + L    
Sbjct: 172 CVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVV 230

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  184 bits (469), Expect = 6e-58
 Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 6/167 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
              D  T L  A   G  + V +LL     A+V    + +  +PIH AA  G+V  V  L
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQHG--ASV-QP-ESDLASPIHEAARRGHVECVNSL 176

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           ++ G +++ K     T L+ A        V+ L+  GA +N + K   + LH    T + 
Sbjct: 177 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASE 235

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
            L  LL++ GA+  A +  G+ P+       +    L L R GA + 
Sbjct: 236 ELACLLMDFGADTQAKNAEGKRPVELVP-PESPLAQLFLEREGASLP 281

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  178 bits (455), Expect = 7e-56
 Identities = 45/179 (25%), Positives = 76/179 (42%), Gaps = 5/179 (2%)

Query: 43  DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLS 102
           D  +  +  +   G  +   I L  +    + +AV    W+P+H AA  G+   +  L+S
Sbjct: 25  DGKQGGMDGSKPAGPRDFPGIRLLSN--PLMGDAVS--DWSPMHEAAIHGHQLSLRNLIS 80

Query: 103 KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL 162
           +G  VN+      + LH A   G L  V++L+  GA++N       T L     +G+   
Sbjct: 81  QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDC 140

Query: 163 CELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
             LL++ GA V        +P+  A    + E    LI +G ++D +     T L  A 
Sbjct: 141 VNLLLQHGASVQPESD-LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLAC 198

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  160 bits (407), Expect = 1e-48
 Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 16/176 (9%)

Query: 51  VAASCGHPEVVEILLSVDESANVVNAVDEE-----GWAPIHSAASIGNVTIVEMLLSKGA 105
           + +S  H      L+     ++ + ++D +     G  P       G       LLS   
Sbjct: 1   MGSSHHHHHHSSGLVP--RGSH-MASMDGKQGGMDGSKPAGPRDFPG-----IRLLSNPL 52

Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
             +  +    + +H AA  G    +  LIS+G  +N       + LH     G+ +  ++
Sbjct: 53  MGDAVS--DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKI 110

Query: 166 LIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
           L++ GA+V+       TPL NA +  + +   LL++HGA V   + +  + +  A+
Sbjct: 111 LLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAA 165

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  148 bits (377), Expect = 4e-44
 Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 5/135 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             D  + +H AA  GH E V  L++     N+ +        P++ A        V+ LL
Sbjct: 154 ESDLASPIHEAARRGHVECVNSLIAYG--GNI-DHKISHLGTPLYLACENQQRACVKKLL 210

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
             GADVN +  G  + LH        ++  LL+  GA   +K+  G   +         A
Sbjct: 211 ESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLA 269

Query: 162 LCELLIEEGAEVDAT 176
               L  EGA +   
Sbjct: 270 -QLFLEREGASLPKP 283

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  194 bits (497), Expect = 1e-63
 Identities = 56/163 (34%), Positives = 82/163 (50%), Gaps = 3/163 (1%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           N +    L  AA  G  E V+ L +V +S N    ++     P+H AA    V++VE LL
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTV-QSVNC-RDIEGRQSTPLHFAAGYNRVSVVEYLL 62

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
             GADV+ K+ GG   LH A S G  ++ ELL+  GA +N  D    T LH  A+ G   
Sbjct: 63  QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 122

Query: 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGA 204
           +C+LL++ GA+    ++ G TPL       + ++  LL    A
Sbjct: 123 ICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  171 bits (437), Expect = 1e-54
 Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 1/147 (0%)

Query: 77  VDEEGWAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALHYAASKGWLKIVELLIS 135
            + E    +  AA  G+V  V+ L +    +         T LH+AA    + +VE L+ 
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63

Query: 136 RGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEV 195
            GA +++KDK G   LH   S G+  + ELL++ GA V+  D    TPL  A      E+
Sbjct: 64  HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 123

Query: 196 ALLLIRHGADVDVEDKEGYTVLGRASN 222
             LL++HGAD   ++++G T L    +
Sbjct: 124 CKLLLQHGADPTKKNRDGNTPLDLVKD 150

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  154 bits (393), Expect = 5e-48
 Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 4/131 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
                 T LH AA      VVE LL     A+ V+A D+ G  P+H+A S G+  + E+L
Sbjct: 38  IEGRQSTPLHFAAGYNRVSVVEYLLQHG--AD-VHAKDKGGLVPLHNACSYGHYEVAELL 94

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           +  GA VN+ +    T LH AA+KG  +I +LL+  GA    K++ G T L      G++
Sbjct: 95  VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDT 153

Query: 161 ALCELLIEEGA 171
            + +LL  + A
Sbjct: 154 DIQDLLRGDAA 164

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  194 bits (497), Expect = 3e-63
 Identities = 49/197 (24%), Positives = 80/197 (40%), Gaps = 13/197 (6%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           + +   +  +       + ++ L          N  D     P+  A  +G    ++ L+
Sbjct: 5   DKNGEIVEKIKDEKSINQNLDFL---------RNYRDSYNRTPLMVACMLGMENAIDKLV 55

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
                +  K+  G TAL +A     L I E L+S+G+ +N+KD  G T L      G S 
Sbjct: 56  ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSE 115

Query: 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
           +   L+E GA V+  +  G+TPL+ A      E+   L+  GAD+   D  G T    A 
Sbjct: 116 MSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASAR 175

Query: 222 NDFRP----ILIDAAKA 234
              R     I  +  +A
Sbjct: 176 IFGRQEVIKIFTEVRRA 192

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  188 bits (480), Expect = 9e-61
 Identities = 51/200 (25%), Positives = 84/200 (42%), Gaps = 15/200 (7%)

Query: 9   IKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEIL 64
             DK+         E   +     L         + R+  +RT L VA   G    ++ L
Sbjct: 3   HMDKNGEIVEKIKDEKSINQNLDFL--------RNYRDSYNRTPLMVACMLGMENAIDKL 54

Query: 65  LSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASK 124
           +        +   D EG   +  A     + I E LLSKG++VN K+  G+T L ++   
Sbjct: 55  VENF--DK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIF 111

Query: 125 GWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
           G+ ++   L+  GA +N ++  G T L   +  G S + + L+E GA++ A D  G T  
Sbjct: 112 GYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAE 171

Query: 185 MNAVICYNKEVALLLIRHGA 204
            +A I   +EV  +      
Sbjct: 172 ASARIFGRQEVIKIFTEVRR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  114 bits (288), Expect = 7e-32
 Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 6/114 (5%)

Query: 108 NLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLI 167
           +  +  G         K   + ++ L       N +D    T L      G     + L+
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLV 55

Query: 168 EEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
           E   +++  D  G T L+ AV      +A  L+  G++V+ +D  G T L  + 
Sbjct: 56  ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSI 109

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  196 bits (501), Expect = 9e-63
 Identities = 65/192 (33%), Positives = 90/192 (46%), Gaps = 15/192 (7%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE-GWAPIHSAASIGNVTIVEML 100
             +D  LL  A      ++V+ LL     ANV N  +EE GW P+H+A  +    IVE+L
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGG--ANV-NFQEEEGGWTPLHNAVQMSREDIVELL 58

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L  GAD  L+   G T    AA  G +K+++L +S+GA +N  D  G TA    A  G  
Sbjct: 59  LRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV 118

Query: 161 ALCELLIEEGAEVDATDK----------AGQTPLMNAVICYNKEVALLLIRH-GADVDVE 209
              + L + GA V+   K           G T LM+A    + EV  +L+   GADV+  
Sbjct: 119 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC 178

Query: 210 DKEGYTVLGRAS 221
           D  G   L  A 
Sbjct: 179 DNMGRNALIHAL 190

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  191 bits (487), Expect = 1e-60
 Identities = 57/197 (28%), Positives = 98/197 (49%), Gaps = 19/197 (9%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R  +  T   +AA  G  +++++ LS    A+ VN  D  G+     AA  G V  ++ L
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKG--AD-VNECDFYGFTAFMEAAVYGKVKALKFL 124

Query: 101 LSKGADVNLKN----------DGGRTALHYAASKGWLKIVELLIS-RGAKINSKDKVGCT 149
             +GA+VNL+            GG TAL  AA KG ++++++L+   GA +N+ D +G  
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184

Query: 150 ALHRGASTGNSALC----ELLIEEGAEVDATDKAGQTPLMNAVICYNKEVA-LLLIRHGA 204
           AL     + + +       LL++ GA+V+   + G+TPL+ AV   +  +   LL +   
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 244

Query: 205 DVDVEDKEGYTVLGRAS 221
           +++  D +G T L  A 
Sbjct: 245 EINDTDSDGKTALLLAV 261

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  181 bits (462), Expect = 6e-57
 Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 13/183 (7%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSV-------DESANVVNAVDEEGWAPIHSAASIGN 93
            +    T    AA  G  + ++ L           ++      + + G   +  AA  G+
Sbjct: 101 CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH 160

Query: 94  VTIVEMLLSK-GADVNLKNDGGRTALHYAASKG----WLKIVELLISRGAKINSKDKVGC 148
           V ++++LL + GADVN  ++ GR AL +A           I  LL+  GA +N + + G 
Sbjct: 161 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK 220

Query: 149 TALHRGASTGNSALCELLIE-EGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
           T L       +  L + L+E E  E++ TD  G+T L+ AV    K++A LL + GA  D
Sbjct: 221 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 280

Query: 208 VED 210
             D
Sbjct: 281 CGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  168 bits (427), Expect = 1e-51
 Identities = 47/157 (29%), Positives = 70/157 (44%), Gaps = 2/157 (1%)

Query: 78  DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK-NDGGRTALHYAASKGWLKIVELLISR 136
             E    +  A    +V +V+ LL  GA+VN +  +GG T LH A       IVELL+  
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 137 GAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVA 196
           GA    + K G T     A  G+  L +L + +GA+V+  D  G T  M A +    +  
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121

Query: 197 LLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAK 233
             L + GA+V++  K                L+DAA+
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATA-LMDAAE 157

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  122 bits (310), Expect = 3e-34
 Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 41  RNDDDRTLLHVAASCGH----PEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTI 96
            ++  R  L  A           +  +LL     A+V N   E G  P+  A    ++ +
Sbjct: 178 CDNMGRNALIHALLSSDDSDVEAITHLLLDHG--ADV-NVRGERGKTPLILAVEKKHLGL 234

Query: 97  VEMLLSK-GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV 146
           V+ LL +   ++N  +  G+TAL  A      KI ELL  RGA  +  D V
Sbjct: 235 VQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDLV 285

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  189 bits (482), Expect = 2e-61
 Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 5/164 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
            +     L  AA+ G  E +  LL  +   NV NA +  G   +     +GN  I   LL
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNN--VNV-NAQNGFGRTALQ-VMKLGNPEIARRLL 57

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
            +GA+ +LK+  G   +H AA  G+L  ++ L+   A +N +D  G   LH  A  G+  
Sbjct: 58  LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR 117

Query: 162 LCELLIEEGAE-VDATDKAGQTPLMNAVICYNKEVALLLIRHGA 204
           + E L++  A  V   +  G T    A +    EV  L+  +GA
Sbjct: 118 VVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  166 bits (423), Expect = 1e-52
 Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 2/146 (1%)

Query: 77  VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR 136
           + E     + SAA+ G++  +  LL    +VN +N  GRTAL      G  +I   L+ R
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLR 59

Query: 137 GAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVA 196
           GA  + KD+ G   +H  A  G     + L+E  A+V+  D  G  PL  A    +  V 
Sbjct: 60  GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119

Query: 197 LLLIRHGA-DVDVEDKEGYTVLGRAS 221
             L++H A +V   + +G T    A 
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLAR 145

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  149 bits (379), Expect = 6e-46
 Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 5/132 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +N   RT L      G+PE+   LL     AN  +  D  G+A IH AA  G +  ++ L
Sbjct: 34  QNGFGRTALQ-VMKLGNPEIARRLLLRG--AN-PDLKDRTGFAVIHDAARAGFLDTLQTL 89

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK-INSKDKVGCTALHRGASTGN 159
           L   ADVN++++ G   LH AA +G L++VE L+   A  +  ++  G TA       G 
Sbjct: 90  LEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR 149

Query: 160 SALCELLIEEGA 171
           + +  L+   GA
Sbjct: 150 NEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 50.1 bits (121), Expect = 4e-08
 Identities = 8/43 (18%), Positives = 17/43 (39%)

Query: 180 GQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASN 222
               L +A    + E    L+++  +V+ ++  G T L     
Sbjct: 5   WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL 47

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  191 bits (487), Expect = 3e-61
 Identities = 56/229 (24%), Positives = 90/229 (39%), Gaps = 20/229 (8%)

Query: 10  KDKD----LFKAAETGDSSTFKSLSKQQLLKS----LSLRNDDDRTLLHVAASCGHPEVV 61
             +D    L  A    + +    + +   +K     L+ +N+  +T LH+A     PE+ 
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIR--QVKGDLAFLNFQNNLQQTPLHLAVITNQPEIA 61

Query: 62  EILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD------VNLKNDGGR 115
           E LL      +     D  G  P+H A   G +  V +L            +   N  G 
Sbjct: 62  EALLGA--GCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH 118

Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDKV-GCTALHRGASTGNSALCELLIEEGAEVD 174
           T LH A+  G+L IVELL+S GA +N+++   G TALH      N  L  LL++ GA+V+
Sbjct: 119 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 178

Query: 175 ATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASND 223
                G +P        +  +   L +   +      E        +  
Sbjct: 179 RVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTES 227

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  160 bits (407), Expect = 4e-49
 Identities = 46/198 (23%), Positives = 73/198 (36%), Gaps = 14/198 (7%)

Query: 9   IKDKD----LFKAAETGDSSTFKSLSKQQLLK--SLSLRNDDDRTLLHVAASCGHPEVVE 62
            ++      L  A  T      ++L    L       LR+    T LH+A   G    V 
Sbjct: 40  FQNNLQQTPLHLAVITNQPEIAEAL----LGAGCDPELRDFRGNTPLHLACEQGCLASVG 95

Query: 63  ILLSV---DESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK-NDGGRTAL 118
           +L          +++ A +  G   +H A+  G + IVE+L+S GADVN +    GRTAL
Sbjct: 96  VLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTAL 155

Query: 119 HYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDK 178
           H A       +V LL+  GA +N     G +         ++ + + L +   E      
Sbjct: 156 HLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP 215

Query: 179 AGQTPLMNAVICYNKEVA 196
             +            E  
Sbjct: 216 ESEDEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  156 bits (396), Expect = 1e-47
 Identities = 39/153 (25%), Positives = 62/153 (40%), Gaps = 11/153 (7%)

Query: 76  AVDEEGWAPIHSAASIGNVT----IVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
            + E+G + +H A           ++  +    A +N +N+  +T LH A      +I E
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62

Query: 132 LLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE------VDATDKAGQTPLM 185
            L+  G     +D  G T LH     G  A   +L +          + AT+  G T L 
Sbjct: 63  ALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH 122

Query: 186 NAVICYNKEVALLLIRHGADVDVEDK-EGYTVL 217
            A I     +  LL+  GADV+ ++   G T L
Sbjct: 123 LASIHGYLGIVELLVSLGADVNAQEPCNGRTAL 155

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  128 bits (325), Expect = 5e-37
 Identities = 38/156 (24%), Positives = 62/156 (39%), Gaps = 12/156 (7%)

Query: 6   DQTIKDKD----LFKAAETGDSSTFKSL----SKQQLLKSLSLRNDDDRTLLHVAASCGH 57
           D  ++D      L  A E G  ++   L    +   L   L   N +  T LH+A+  G+
Sbjct: 70  DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY 129

Query: 58  PEVVEILLSVDESANVVNAVDE-EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRT 116
             +VE+L+S+   A+V NA +   G   +H A  + N  +V +LL  GADVN     G +
Sbjct: 130 LGIVELLVSLG--ADV-NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 186

Query: 117 ALHYAASKGWLKIVELLISRGAKINSKDKVGCTALH 152
                  +   +I + L     +             
Sbjct: 187 PYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEES 222

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 89.5 bits (223), Expect = 6e-22
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             + RT LH+A    +P++V +LL     A+V N V  +G++P        +  I + L 
Sbjct: 148 PCNGRTALHLAVDLQNPDLVSLLLKCG--ADV-NRVTYQGYSPYQLTWGRPSTRIQQQLG 204

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVE 131
               +             Y     + +  E
Sbjct: 205 QLTLENLQMLPESEDEESYDTESEFTEFTE 234

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  190 bits (485), Expect = 5e-61
 Identities = 39/182 (21%), Positives = 68/182 (37%), Gaps = 7/182 (3%)

Query: 43  DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLS 102
              +  L         +     ++      V    +    A +  ++  G   +V+ ++ 
Sbjct: 3   ITGQVSLPPGKRTNLRKTGSERIAHG--MRV-KF-NPLPLALLLDSSLEGEFDLVQRIIY 58

Query: 103 KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL 162
           +  D +L ND G TALH A   G  +IV+ L+  G  +N+ D  G T LH  AS  N  +
Sbjct: 59  EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV 118

Query: 163 CELLIEEGAEVDATDKAGQ---TPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGR 219
           C+ L+E GA V A   +           +     + +  L      + + +K     L  
Sbjct: 119 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWD 178

Query: 220 AS 221
             
Sbjct: 179 YE 180

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  172 bits (438), Expect = 7e-54
 Identities = 41/190 (21%), Positives = 76/190 (40%), Gaps = 19/190 (10%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           N     LL  ++  G  ++V+ ++      +  +  ++EG   +H+A   G+  IV+ L+
Sbjct: 34  NPLPLALLLDSSLEGEFDLVQRIIYEV--DDP-SLPNDEGITALHNAVCAGHTEIVKFLV 90

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK---DKVGCTALHRGASTG 158
             G +VN  +  G T LH AAS   +++ + L+  GA + +    D             G
Sbjct: 91  QFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEG 150

Query: 159 NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVAL-----LLIRHGADVDVE---- 209
            +   + L     ++   +K     L +     + E+ +     + I H  D D      
Sbjct: 151 YTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWW 210

Query: 210 ----DKEGYT 215
               DKEGY 
Sbjct: 211 ARLNDKEGYV 220

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  158 bits (403), Expect = 1e-48
 Identities = 32/148 (21%), Positives = 54/148 (36%), Gaps = 4/148 (2%)

Query: 78  DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG 137
           +  G   +               ++ G  V   N      L  ++ +G   +V+ +I   
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEV 60

Query: 138 AKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVAL 197
              +  +  G TALH     G++ + + L++ G  V+A D  G TPL  A  C N +V  
Sbjct: 61  DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCK 120

Query: 198 LLIRHGADV---DVEDKEGYTVLGRASN 222
            L+  GA V      D +          
Sbjct: 121 FLVESGAAVFAMTYSDMQTAADKCEEME 148

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  103 bits (258), Expect = 4e-27
 Identities = 29/144 (20%), Positives = 45/144 (31%), Gaps = 20/144 (13%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            + D  T LH AASC + +V + L+    +   +   D +  A        G     + L
Sbjct: 99  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
                 + + N G   AL     +      EL +  G  +        T +HR       
Sbjct: 159 YGVQEKMGIMNKGVIYALWDYEPQN---DDELPMKEGDCM--------TIIHRE------ 201

Query: 161 ALCELLIEEGAEVDATDKAGQTPL 184
              +    E       DK G  P 
Sbjct: 202 ---DEDEIEWWWARLNDKEGYVPR 222

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  186 bits (475), Expect = 2e-60
 Identities = 64/161 (39%), Positives = 93/161 (57%), Gaps = 3/161 (1%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             D    L  AA  G  + V IL++    A+V NA D  GW P+H AA  G++ IVE+LL
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILMANG--ADV-NAEDASGWTPLHLAAFNGHLEIVEVLL 67

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
             GADVN  +  G T L  AA  G L+IVE+L+  GA +N+ D  G T LH  A  G+  
Sbjct: 68  KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLE 127

Query: 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRH 202
           + E+L++ GA+V+A DK G+T    ++   N+++A +L + 
Sbjct: 128 IVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  178 bits (454), Expect = 4e-57
 Identities = 53/151 (35%), Positives = 85/151 (56%)

Query: 71  ANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIV 130
           ++  +    +    +  AA  G    V +L++ GADVN ++  G T LH AA  G L+IV
Sbjct: 4   SHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIV 63

Query: 131 ELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVIC 190
           E+L+  GA +N+ D  G T L   A  G+  + E+L++ GA+V+A D  G TPL  A + 
Sbjct: 64  EVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMF 123

Query: 191 YNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
            + E+  +L+++GADV+ +DK G T    + 
Sbjct: 124 GHLEIVEVLLKNGADVNAQDKFGKTAFDISI 154

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  152 bits (387), Expect = 5e-47
 Identities = 58/128 (45%), Positives = 76/128 (59%), Gaps = 3/128 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +    T LH+AA  GH E+VE+LL     A+ VNAVD  G  P+  AA  G++ IVE+L
Sbjct: 43  EDASGWTPLHLAAFNGHLEIVEVLLKNG--AD-VNAVDHAGMTPLRLAALFGHLEIVEVL 99

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L  GADVN  +  G T LH AA  G L+IVE+L+  GA +N++DK G TA       GN 
Sbjct: 100 LKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNE 159

Query: 161 ALCELLIE 168
            L E+L +
Sbjct: 160 DLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 38.9 bits (92), Expect = 4e-04
 Identities = 5/28 (17%), Positives = 15/28 (53%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVD 68
           ++   +T   ++   G+ ++ EIL  ++
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEILQKLN 169

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  189 bits (483), Expect = 5e-59
 Identities = 27/192 (14%), Positives = 66/192 (34%), Gaps = 15/192 (7%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESAN--VVNAVDEEGWAPIHSAASIGNVTIVE 98
           ++  D T L  A    + E +++++    S +   ++  +++G + +H A  I    +  
Sbjct: 169 KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAM 228

Query: 99  MLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK-------------INSKDK 145
             +  G DVN++++     L+ +     + + + L+ +                +     
Sbjct: 229 RFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRV 288

Query: 146 VGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGAD 205
           V    +   A      + +LL E+  EV  +   G    +         V  + +   A 
Sbjct: 289 VWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAP 348

Query: 206 VDVEDKEGYTVL 217
           V    +      
Sbjct: 349 VRTRSRSRARSS 360

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  179 bits (457), Expect = 3e-55
 Identities = 36/239 (15%), Positives = 75/239 (31%), Gaps = 32/239 (13%)

Query: 9   IKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEIL 64
                    +  A     +    +L        +    +  +    +   C   EV EI 
Sbjct: 79  HSLWHGQKPIHLAVMANKTDLVVAL--------VEGAKERGQMPESLLNECDEREVNEIG 130

Query: 65  LSVDESANVVNAVDEEGWAPIHSAASIGN--VTIVEMLLSKGADVNLKNDGGRTALHYAA 122
                     +    +G   +H    +G   + ++++L+  GA    K+    T L  A 
Sbjct: 131 ---------SHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAM 181

Query: 123 SKGWLKIVELLISR-----GAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD 177
                + ++L++         +++  +K G + LH         +    +E G +V+  D
Sbjct: 182 EFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMED 241

Query: 178 KAGQTPLMNAVICYNKEVALLLIRHGADVDVED---KEGYTVLGRASNDFRPILIDAAK 233
                PL  +V      +   L++      ++      G TVL         +   AA 
Sbjct: 242 NEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPA-AAD 299

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  164 bits (417), Expect = 3e-49
 Identities = 42/171 (24%), Positives = 57/171 (33%), Gaps = 25/171 (14%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
               D+E    IH AA  G    V  L+  G    ++N  G TALH A   G +   + L
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYL 72

Query: 134 ISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDAT----------------- 176
            S G   +     G   +H       + L   L+E   E                     
Sbjct: 73  ASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIG 130

Query: 177 ----DKAGQTPLMNAVICYN--KEVALLLIRHGADVDVEDKEGYTVLGRAS 221
                  GQT L   V       E+  +L++ GA    +DK   T L RA 
Sbjct: 131 SHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAM 181

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  162 bits (412), Expect = 1e-48
 Identities = 46/188 (24%), Positives = 73/188 (38%), Gaps = 24/188 (12%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +N    T LH+A   G  +  + L SV       +     G  PIH A       +V  L
Sbjct: 49  QNRFGCTALHLACKFGCVDTAKYLASVG--EV-HSLWH--GQKPIHLAVMANKTDLVVAL 103

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           +    +       G+            ++ E+        + K   G TALH     G  
Sbjct: 104 VEGAKER------GQMPESLLNECDEREVNEIG------SHVKHCKGQTALHWCVGLGPE 151

Query: 161 AL--CELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLI-----RHGADVDVEDKEG 213
            L   ++L++ GA   A DKA +TPLM A+   N+E   L++     +    +D  +K+G
Sbjct: 152 YLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQG 211

Query: 214 YTVLGRAS 221
            + L  A 
Sbjct: 212 NSHLHWAI 219

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  153 bits (388), Expect = 5e-45
 Identities = 31/204 (15%), Positives = 61/204 (29%), Gaps = 25/204 (12%)

Query: 4   DIDQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKS---LSLRNDDDRTLLHVAASCG 56
                 KDK     L +A E  +      +      KS   L   N    + LH A    
Sbjct: 165 SPT--AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILIN 222

Query: 57  HPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND---- 112
             +V    + +    +V N  D E   P++ +     V + + LL K     ++      
Sbjct: 223 WEDVAMRFVEMG--IDV-NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHN 279

Query: 113 ---------GGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
                         +  AA     ++++LL  +  ++      G     +       A+ 
Sbjct: 280 GTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVK 339

Query: 164 ELLIEEGAEVDATDKAGQTPLMNA 187
            + +   A V    ++       +
Sbjct: 340 RMKLAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  126 bits (318), Expect = 1e-34
 Identities = 27/123 (21%), Positives = 42/123 (34%), Gaps = 8/123 (6%)

Query: 99  MLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
           M      +    +D     +H AA KG    V  LI  G     +++ GCTALH     G
Sbjct: 5   MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFG 64

Query: 159 NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLG 218
                + L   G         GQ P+  AV+    ++ + L+    +       G     
Sbjct: 65  CVDTAKYLASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAKER------GQMPES 116

Query: 219 RAS 221
             +
Sbjct: 117 LLN 119

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  184 bits (470), Expect = 7e-59
 Identities = 49/209 (23%), Positives = 83/209 (39%), Gaps = 11/209 (5%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV 73
           +F+A  T +  T   L  ++    +    D   T      S G   ++         +N 
Sbjct: 16  VFRALYTFEPRTPDELYIEE--GDIIYITDMSDTNWWKGTSKGRTGLIP--------SNY 65

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           V    E    P+H AA  GN++ +   L     VN  +  G TAL++A   G   IVE+L
Sbjct: 66  VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEML 125

Query: 134 IS-RGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYN 192
            +    ++N ++K+G TALH  A  G + + +LL+ +GA  D  +   +     A     
Sbjct: 126 FTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAAC 185

Query: 193 KEVALLLIRHGADVDVEDKEGYTVLGRAS 221
             +        A   + + E Y     + 
Sbjct: 186 ASLLKKKQGTDAVRTLSNAEDYLDDEDSD 214

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  174 bits (444), Expect = 6e-55
 Identities = 38/178 (21%), Positives = 65/178 (36%), Gaps = 9/178 (5%)

Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           +  +  A     P   + L    E  ++   + +          S G        L    
Sbjct: 13  QVKVFRALYTFEPRTPDELYI--EEGDI-IYITDMSDTNWWKGTSKGRT-----GLIPSN 64

Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
            V  + +     LH AA +G L  +   +     +N  DK G TAL+     G+  + E+
Sbjct: 65  YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEM 124

Query: 166 LI-EEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASN 222
           L  +   E++  +K G T L  A      ++  LL+  GA  D+ + E       A+N
Sbjct: 125 LFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATN 182

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  166 bits (423), Expect = 8e-52
 Identities = 43/187 (22%), Positives = 77/187 (41%), Gaps = 13/187 (6%)

Query: 4   DIDQTIKDKD--LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVV 61
           DI       D   +K    G +    S    +       + +     LH AA  G+   +
Sbjct: 37  DIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE-------QAESIDNPLHEAAKRGNLSWL 89

Query: 62  EILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALHY 120
              L       V N +D+ G   ++ A   G+  IVEML ++   ++N +N  G TALH 
Sbjct: 90  RECLD--NRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHA 146

Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
           AA KG+  IV+LL+++GA+ + ++     A     +   ++L +      A    ++   
Sbjct: 147 AAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206

Query: 181 QTPLMNA 187
                ++
Sbjct: 207 YLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  139 bits (353), Expect = 3e-41
 Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 6/148 (4%)

Query: 75  NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
               + G   +  A         + L  +  D+    D   T      SKG   ++    
Sbjct: 6   PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIP--- 62

Query: 135 SRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
                +  + +     LH  A  GN +     ++    V+  DKAG T L  A    +K+
Sbjct: 63  --SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKD 120

Query: 195 VALLLIRH-GADVDVEDKEGYTVLGRAS 221
           +  +L      +++ ++K G T L  A+
Sbjct: 121 IVEMLFTQPNIELNQQNKLGDTALHAAA 148

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  131 bits (332), Expect = 4e-38
 Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +    T L+ A   GH ++VE+L +   +  + N  ++ G   +H+AA  G   IV++L
Sbjct: 102 LDKAGSTALYWACHGGHKDIVEMLFT-QPNIEL-NQQNKLGDTALHAAAWKGYADIVQLL 159

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
           L+KGA  +L+N   + A   A +     +++      A     +              
Sbjct: 160 LAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 81.1 bits (201), Expect = 5e-19
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 12/89 (13%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +N    T LH AA  G+ ++V++LL+    A   +  + E       A +    ++++  
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKG--ART-DLRNIEKKLAFDMATNAACASLLKKK 192

Query: 101 LSKGADVNLKNDGG---------RTALHY 120
               A   L N                H+
Sbjct: 193 QGTDAVRTLSNAEDYLDDEDSDLEHHHHH 221

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 7/48 (14%), Positives = 14/48 (29%)

Query: 175 ATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASN 222
              K GQ  +  A+  +       L     D+        T   + ++
Sbjct: 7   KPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTS 54

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  181 bits (461), Expect = 2e-58
 Identities = 53/156 (33%), Positives = 80/156 (51%), Gaps = 4/156 (2%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           D    L  AA  G  + V IL++    A      D  G +P+H AA  G+ +  E+LL  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANG--APF--TTDWLGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
           G   + +    RT LH AAS+G   IVE+L+  GA +N+KD +  TALH      +  + 
Sbjct: 57  GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV 116

Query: 164 ELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL 199
           ELLI+ GA+V    K  +T    ++   N+++A +L
Sbjct: 117 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  169 bits (432), Expect = 5e-54
 Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 1/142 (0%)

Query: 80  EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
           +    +  AA  G    V +L++ GA     +  G + LH AA  G     E+L+  G  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 140 INSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL 199
            +++ KV  T LH  AS G++ + E+L++ GA+V+A D    T L  A    ++EV  LL
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119

Query: 200 IRHGADVDVEDKEGYTVLGRAS 221
           I++GADV  + K   T    + 
Sbjct: 120 IKYGADVHTQSKFCKTAFDISI 141

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  149 bits (379), Expect = 4e-46
 Identities = 47/125 (37%), Positives = 66/125 (52%), Gaps = 3/125 (2%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           +    + LH+AA  GH    E+LL      +  +A  +    P+H AAS G+  IVE+LL
Sbjct: 31  DWLGTSPLHLAAQYGHFSTTEVLLRAG--VS-RDARTKVDRTPLHMAASEGHANIVEVLL 87

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
             GADVN K+    TALH+A      ++VELLI  GA ++++ K   TA       GN  
Sbjct: 88  KHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNED 147

Query: 162 LCELL 166
           L E+L
Sbjct: 148 LAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  112 bits (283), Expect = 1e-31
 Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 3/93 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R   DRT LH+AAS GH  +VE+LL     A+ VNA D      +H A    +  +VE+L
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHG--AD-VNAKDMLKMTALHWATEHNHQEVVELL 119

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           +  GADV+ ++   +TA   +   G   + E+L
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  185 bits (472), Expect = 2e-58
 Identities = 45/199 (22%), Positives = 71/199 (35%), Gaps = 15/199 (7%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIV 97
                +D  T LH+A    H   ++ LL        ++  ++ G   +H AA +G  + V
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 98  EMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD------------- 144
           E L + GA V +   GG TALH A          +L+                       
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 145 KVGCTALHRGASTGNSAL-CELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHG 203
                     +             +   +++A +  G TPL  AVI  + E+  LL   G
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG 181

Query: 204 ADVDVEDKE-GYTVLGRAS 221
           AD++  +   G T L  A 
Sbjct: 182 ADLNKPEPTCGRTPLHLAV 200

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  183 bits (468), Expect = 7e-58
 Identities = 43/193 (22%), Positives = 69/193 (35%), Gaps = 12/193 (6%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANV----------VNAVDEEGWAPIHSAAS 90
                 T LH+A          +LL    S              +   +   AP    + 
Sbjct: 74  AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQ 133

Query: 91  IGNVT-IVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK-VGC 148
                            +  +N  G T LH A      ++V LL   GA +N  +   G 
Sbjct: 134 PNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGR 193

Query: 149 TALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDV 208
           T LH       +++ ELL++ GA+  A    G+TPL +A++  N  +A LL  HGA    
Sbjct: 194 TPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPE 253

Query: 209 EDKEGYTVLGRAS 221
           +  +  +    + 
Sbjct: 254 DGGDKLSPCSSSG 266

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  165 bits (420), Expect = 1e-50
 Identities = 33/163 (20%), Positives = 54/163 (33%), Gaps = 4/163 (2%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           +         +      E             +  A + +G  P+H A    +  +V +L 
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWR--LQL-EAENYDGHTPLHVAVIHKDAEMVRLLR 178

Query: 102 SKGADVNLK-NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
             GAD+N      GRT LH A       ++ELL+  GA   ++   G T L       N 
Sbjct: 179 DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNP 238

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHG 203
            L  LL   GA          +P  ++    + +       + 
Sbjct: 239 ILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  159 bits (405), Expect = 2e-48
 Identities = 37/166 (22%), Positives = 61/166 (36%), Gaps = 17/166 (10%)

Query: 73  VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD---VNLKNDGGRTALHYAASKGWLKI 129
           V   V E+G   +H A    +   ++ LL   A    ++L+ND G+TALH AA  G    
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 130 VELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTP------ 183
           VE L + GA +   ++ G TALH            +L++                     
Sbjct: 61  VEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCT 120

Query: 184 --------LMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
                    +++      E           ++ E+ +G+T L  A 
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAV 166

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  142 bits (361), Expect = 9e-42
 Identities = 35/129 (27%), Positives = 52/129 (40%), Gaps = 4/129 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE-GWAPIHSAASIGNVTIVEM 99
            N D  T LHVA      E+V +L      A++ N  +   G  P+H A      +++E+
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAG--ADL-NKPEPTCGRTPLHLAVEAQAASVLEL 210

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN 159
           LL  GAD   +  GGRT L  A  +    +  LL + GA          +      S  +
Sbjct: 211 LLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSD 270

Query: 160 SALCELLIE 168
           S   +   E
Sbjct: 271 SDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  128 bits (325), Expect = 2e-36
 Identities = 29/133 (21%), Positives = 50/133 (37%), Gaps = 6/133 (4%)

Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAK---INSKDKVGCTALHRGASTGNSALC 163
                + G TALH A        ++ L+   A    ++ ++ +G TALH  A  G ++  
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 164 ELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASND 223
           E L   GA V   ++ G T L  A        A +L++       +  + Y    +    
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 224 ---FRPILIDAAK 233
                P  +D+  
Sbjct: 122 DTSHAPAAVDSQP 134

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  185 bits (472), Expect = 2e-58
 Identities = 32/176 (18%), Positives = 75/176 (42%), Gaps = 7/176 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +    +  + A +  +  +V  LL+    A   N ++     P+H AA++ +  IV++L
Sbjct: 27  ADVHGHSASYYAIADNNVRLVCTLLN--AGALK-NLLE--NEFPLHQAATLEDTKIVKIL 81

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG-CTALHRGASTGN 159
           L  G D +  +D G TAL+YA   G ++ V+L + +  ++    K G  T+ +      +
Sbjct: 82  LFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND 141

Query: 160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYT 215
            ++    + E            + +   +   + ++ +LL+ +    +  +   + 
Sbjct: 142 VSIVSYFLSEIP-STFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFI 196

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  171 bits (436), Expect = 5e-53
 Identities = 38/176 (21%), Positives = 69/176 (39%), Gaps = 10/176 (5%)

Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
            L  +       + ++  LS   S +     D  G +  + A +  NV +V  LL+ GA 
Sbjct: 3   DLSRIN--TWKSKQLKSFLS---SKDT-FKADVHGHSASYYAIADNNVRLVCTLLNAGAL 56

Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
            NL        LH AA+    KIV++L+  G   +  D  G TAL+    +GN    +L 
Sbjct: 57  KNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLF 114

Query: 167 IEEGAEVDATDKAG-QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
           +++   +    K G +T   +AV+  +  +    +        +     + +    
Sbjct: 115 VKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF-DLAILLSCIHITI 169

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  171 bits (436), Expect = 7e-53
 Identities = 24/184 (13%), Positives = 66/184 (35%), Gaps = 13/184 (7%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWA-PIHSAASIGNVTIVEM 99
            +D   T L+ A   G+ + V++ +  +    +     + GW    + A  + +V+IV  
Sbjct: 91  FDDKGNTALYYAVDSGNMQTVKLFVKKN--WRL-MFYGKTGWKTSFYHAVMLNDVSIVSY 147

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCT-ALHRGASTG 158
            LS+            + +H     G + ++ LL+      N+ + +     +       
Sbjct: 148 FLSEIPSTFDLAIL-LSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNK 206

Query: 159 NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLG 218
           +  + + L +    +        +  +  V+  + E+A ++I    +   +       + 
Sbjct: 207 DIEMLQALFKYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIV 259

Query: 219 RASN 222
           + + 
Sbjct: 260 KNNK 263

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 76.4 bits (189), Expect = 9e-17
 Identities = 12/106 (11%), Positives = 31/106 (29%), Gaps = 12/106 (11%)

Query: 41  RNDDDRT-LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
            N       + +A      E+++ L   D   N+  + +            + +  I +M
Sbjct: 190 NNSLLFIPDIKLAIDNKDIEMLQALFKYD--INI-YSAN-------LENVLLDDAEIAKM 239

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           ++ K  +    +      +        +      + R   +N   K
Sbjct: 240 IIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKEL-RLMYVNCVKK 284

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  187 bits (477), Expect = 2e-58
 Identities = 54/215 (25%), Positives = 86/215 (40%), Gaps = 25/215 (11%)

Query: 41  RNDDDRTLLHVAASCGH-PEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
             +  +  L  AA  G+  +++ +L  ++   N  +A D     P+H AA    V IV++
Sbjct: 20  TGEYKKDELLEAARSGNEEKLMALLTPLN--VNC-HASDGRKSTPLHLAAGYNRVRIVQL 76

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN 159
           LL  GADV+ K+ GG   LH A S G  ++ ELL+  GA +N+ D    T LH  AS   
Sbjct: 77  LLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNR 136

Query: 160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRH----------------- 202
             +C LL+  GA+    +  G++ +  A     +E      +                  
Sbjct: 137 VEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKK 196

Query: 203 ----GADVDVEDKEGYTVLGRASNDFRPILIDAAK 233
                     + +   T L  A     P     A+
Sbjct: 197 TLALEIINFKQPQSHETALHCAVASLHPKRKQVAE 231

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  181 bits (461), Expect = 5e-56
 Identities = 43/185 (23%), Positives = 81/185 (43%), Gaps = 18/185 (9%)

Query: 40  LRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
           L N   ++ + +A +    E +                   G + +  AA   ++  V+ 
Sbjct: 152 LVNCHGKSAVDMAPTPELRERLTYEFK--------------GHSLLQ-AAREADLAKVKK 196

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGW---LKIVELLISRGAKINSKDKVGCTALHRGAS 156
            L+       +     TALH A +       ++ ELL+ +GA +N K+K   T LH  A 
Sbjct: 197 TLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAE 256

Query: 157 TGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTV 216
             ++ + E+L + GA+++A D  GQT L  A +  + +   LL+ +G+D  +   +G+T 
Sbjct: 257 RAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTA 316

Query: 217 LGRAS 221
               +
Sbjct: 317 AQMGN 321

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  176 bits (448), Expect = 5e-54
 Identities = 50/164 (30%), Positives = 75/164 (45%), Gaps = 4/164 (2%)

Query: 59  EVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT-IVEMLLSKGADVNLKNDGGRTA 117
           +    L     SA       E     +  AA  GN   ++ +L     + +  +    T 
Sbjct: 5   KSALDLAD--PSAKA-VLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTP 61

Query: 118 LHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD 177
           LH AA    ++IV+LL+  GA +++KDK G   LH   S G+  + ELL++ GA V+A D
Sbjct: 62  LHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD 121

Query: 178 KAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
               TPL  A      EV  LL+ HGAD  + +  G + +  A 
Sbjct: 122 LWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAP 165

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  175 bits (446), Expect = 1e-53
 Identities = 50/215 (23%), Positives = 78/215 (36%), Gaps = 29/215 (13%)

Query: 6   DQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVV 61
           D T+ +      +  A             K               +LL  AA       V
Sbjct: 149 DPTLVNCHGKSAVDMAPTPELRERLTYEFKG-------------HSLLQ-AAREADLAKV 194

Query: 62  EILLSVDESANVVNAVDEEGWAPIHSAASIG---NVTIVEMLLSKGADVNLKNDGGRTAL 118
           +  L+      +     +     +H A +        + E+LL KGA+VN KN    T L
Sbjct: 195 KKTLA---LEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPL 251

Query: 119 HYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDK 178
           H AA +    ++E+L   GAK+N+ D +G TALHR A  G+   C LL+  G++      
Sbjct: 252 HVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISL 311

Query: 179 AGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEG 213
            G T           E    ++     +   D + 
Sbjct: 312 QGFTAAQMG-----NEAVQQILSESTPMRTSDVDY 341

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 77.9 bits (193), Expect = 5e-17
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 10/85 (11%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +   +T LH AA  GH +   +LLS    ++  + +  +G+              V+ +
Sbjct: 276 LDSLGQTALHRAALAGHLQTCRLLLSYG--SDP-SIISLQGFTAAQMGN-----EAVQQI 327

Query: 101 LSKGADVNLKNDGGRTALHYAASKG 125
           LS+   +   +   R  L  A+  G
Sbjct: 328 LSESTPMRTSDVDYR--LLEASKAG 350

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  185 bits (473), Expect = 1e-57
 Identities = 44/179 (24%), Positives = 78/179 (43%), Gaps = 12/179 (6%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGN---VTIV 97
            N  +R+ LH AA+     ++  +L+  +    +  +D  G   +   A       V   
Sbjct: 195 YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASA 254

Query: 98  EMLLSKGADVNL--------KNDGGRTALHYAASKGWLKIVELLIS-RGAKINSKDKVGC 148
           ++L+ KGA V+         +   GRTALHYAA    + IV+ L+  +G+  + +D+ G 
Sbjct: 255 KLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGK 314

Query: 149 TALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
           T +   A  G   +   LI++GA V+A D    T    A    +  +  +  R   + +
Sbjct: 315 TPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  184 bits (470), Expect = 4e-57
 Identities = 53/237 (22%), Positives = 98/237 (41%), Gaps = 28/237 (11%)

Query: 10  KDKD----LFKAAETGDSSTFKSLSKQQLLKSLSL------RNDDDRTLLHVAASCGHPE 59
             +     L   A    +   + L   +  + ++        + D+ T L +A       
Sbjct: 121 DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRR 180

Query: 60  VVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK---GADVNLKNDGGRT 116
           +V  L+     A+     ++   + +H AA+  +  ++  +L+      D+   +  G T
Sbjct: 181 LVAYLMKAG--ADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMT 237

Query: 117 ALHYAA---SKGWLKIVELLISRGAKIN--------SKDKVGCTALHRGASTGNSALCEL 165
           AL   A    +  +   +LL+ +GAK++        S+   G TALH  A   N  + + 
Sbjct: 238 ALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKY 297

Query: 166 LI-EEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
           L+ E+G+  D  D+ G+TP+M A      EV + LI+ GA V+  D   +T    A 
Sbjct: 298 LVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQ 354

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  172 bits (438), Expect = 3e-52
 Identities = 47/203 (23%), Positives = 79/203 (38%), Gaps = 27/203 (13%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
              +    LH  A+ G   + E +    ES N+++         +H  AS  +    E L
Sbjct: 90  PEPESPIKLHTEAA-GSYAITEPITR--ESVNIID--PRHNRTVLHWIASNSSAEKSEDL 144

Query: 101 L--------SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALH 152
           +        + GADVN  +    T L  A      ++V  L+  GA     +K   +ALH
Sbjct: 145 IVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALH 204

Query: 153 RGASTGNSALCELLIE---EGAEVDATDKAGQTPLMNAVICYNKE---VALLLIRHGADV 206
           + A+  +  +   ++       +++  D+ G T LM       ++    A LL+  GA V
Sbjct: 205 QAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV 264

Query: 207 DV--------EDKEGYTVLGRAS 221
           D         E  +G T L  A+
Sbjct: 265 DYDGAARKDSEKYKGRTALHYAA 287

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  147 bits (372), Expect = 1e-42
 Identities = 38/182 (20%), Positives = 78/182 (42%), Gaps = 18/182 (9%)

Query: 9   IKDKD----LFKAAETGDSSTFKSL-SKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEI 63
           I +K     L +AA   D      + +  +L   +   + +  T L + A     + V  
Sbjct: 194 IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVAS 253

Query: 64  ---LLSVDESANV-------VNAVDEEGWAPIHSAASIGNVTIVEMLLS-KGADVNLKND 112
              L+     A V        ++   +G   +H AA + N+ IV+ L+  KG++ + +++
Sbjct: 254 AKLLVEKG--AKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE 311

Query: 113 GGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE 172
            G+T +  AA +G +++V  LI +GA + + D    TA     +  +  + ++      E
Sbjct: 312 DGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371

Query: 173 VD 174
            +
Sbjct: 372 RE 373

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  125 bits (315), Expect = 3e-34
 Identities = 24/155 (15%), Positives = 43/155 (27%), Gaps = 19/155 (12%)

Query: 75  NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
           +         +  A+  G +             N                G   + +   
Sbjct: 31  HQSITSSQHSLLEASYDGYIKRQR---------NELQHYSLYPNPQGYGNGNDFLGDFNH 81

Query: 135 SRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
           +        +      LH   + G+ A+ E +  E   +    +  +T L       + E
Sbjct: 82  TNLQIPTEPEPESPIKLHT-EAAGSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAE 139

Query: 195 VALLLIRH--------GADVDVEDKEGYTVLGRAS 221
            +  LI H        GADV+  D +  T L  A 
Sbjct: 140 KSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAV 174

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 95.0 bits (237), Expect = 4e-23
 Identities = 15/120 (12%), Positives = 32/120 (26%), Gaps = 11/120 (9%)

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
            K    +      + +L  A+  G++K            N           +G   GN  
Sbjct: 25  EKNRKNHQSITSSQHSLLEASYDGYIKRQR---------NELQHYSLYPNPQGYGNGNDF 75

Query: 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
           L +            +      L       +  +   + R   ++  + +   TVL   +
Sbjct: 76  LGDFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNII-DPRHNRTVLHWIA 133

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  172 bits (438), Expect = 6e-54
 Identities = 47/199 (23%), Positives = 78/199 (39%), Gaps = 30/199 (15%)

Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           + L +AA     + +  LL   E   V +     G   +H AA   N+    +L+    +
Sbjct: 5   SPLLLAAKENDVQALSKLL-KFEGCEV-HQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 107 V-----NLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK-------------VGC 148
           +       +   G+TALH A     + +V  L++RGA ++++                G 
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122

Query: 149 TALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVAL----LLIRHGA 204
             L   A  G+  +  LLIE GA++ A D  G T L   ++  NK  A     LL+ +  
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDG 182

Query: 205 DVD------VEDKEGYTVL 217
                    V + +G T  
Sbjct: 183 GDHLKSLELVPNNQGLTPF 201

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  115 bits (289), Expect = 1e-31
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 6/116 (5%)

Query: 114 GRTALHYAASKGWLKIV-ELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE 172
             + L  AA +  ++ + +LL   G +++ +  +G TALH  A   N     +L+E   E
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 173 V-----DATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASND 223
           +      +    GQT L  AVI  N  +   L+  GA V              +  
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLI 118

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  179 bits (456), Expect = 3e-57
 Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 8/170 (4%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             +      +    GH         +   A+V      E   P  +AA   +   +  LL
Sbjct: 11  AGEGAMEYLIEWKDGHSPSWVPSSYIA--ADV----VSEYETPWWTAARKADEQALSQLL 64

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD-KVGCTALHRGASTGNS 160
            +  DV+  ++ GRTAL + A  G  K V LL   GA ++ +D + G TALH  A     
Sbjct: 65  -EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRP 123

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVED 210
            + E L+E GA+++  D+ G T L  A            ++ G  + +E 
Sbjct: 124 EVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  154 bits (391), Expect = 2e-47
 Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 5/153 (3%)

Query: 70  SANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKI 129
           +  + +    EG          G+           ADV  +     T    AA K   + 
Sbjct: 3   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQA 59

Query: 130 VELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD-KAGQTPLMNAV 188
           +  L+     +++ D+ G TAL   A  G+     LL E GA++D  D + G T L  A 
Sbjct: 60  LSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 118

Query: 189 ICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
                EV   L+  GAD++VED+ G T L  A 
Sbjct: 119 GYVRPEVVEALVELGADIEVEDERGLTALELAR 151

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  119 bits (301), Expect = 6e-34
 Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 4/107 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE-GWAPIHSAASIGNVTIVEM 99
            +++ RT L   A  G  + V +L      A++ +  D   G   +H AA      +VE 
Sbjct: 72  VDENGRTALLFVAGLGSDKCVRLLAEAG--ADL-DHRDMRGGLTALHMAAGYVRPEVVEA 128

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV 146
           L+  GAD+ ++++ G TAL  A            +  G +I  +  +
Sbjct: 129 LVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVI 175

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 53.3 bits (129), Expect = 5e-09
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 19/78 (24%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT------ 95
                T LH+AA    PEVVE L+ +   A++    DE G   +  A  I   T      
Sbjct: 107 MRGGLTALHMAAGYVRPEVVEALVELG--ADI-EVEDERGLTALELAREILKTTPKGNPM 163

Query: 96  ----------IVEMLLSK 103
                     ++ +L  +
Sbjct: 164 QFGRRIGLEKVINVLEGQ 181

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  180 bits (458), Expect = 4e-56
 Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 5/179 (2%)

Query: 40  LRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
           + +   +    +    G    +E  +   +         ++G   +  A S G+   V  
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVV--KRKKT-KVKFDDGAVFLA-ACSSGDTEEVLR 58

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN 159
           LL +GAD+N  N  G TALH A     + +V+ L+  GA IN  D  G   LH  AS G 
Sbjct: 59  LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY 118

Query: 160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLI-RHGADVDVEDKEGYTVL 217
             + E LI +GA V A +  G TPL  A     +E+    + R G D++   KE   ++
Sbjct: 119 LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM 177

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  175 bits (446), Expect = 3e-54
 Identities = 50/191 (26%), Positives = 83/191 (43%), Gaps = 11/191 (5%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +++    LH AASCG+ ++ E L+S    A+V  AV+ EG  P+  A       +++  
Sbjct: 102 PDNEGWIPLHAAASCGYLDIAEYLISQG--AHV-GAVNSEGDTPLDIAEEEAMEELLQNE 158

Query: 101 LSK-GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN 159
           +++ G D+         A             + L S         K G TALH  A+ G 
Sbjct: 159 VNRQGVDIE-------AARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGY 211

Query: 160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGR 219
           + + +LLI+   +V+  D  G TPL  A     +E   +L+ +  D++  +K G T    
Sbjct: 212 TEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDV 271

Query: 220 ASNDFRPILID 230
           A  D    L +
Sbjct: 272 ADEDILGYLEE 282

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  168 bits (427), Expect = 2e-51
 Identities = 41/172 (23%), Positives = 68/172 (39%), Gaps = 9/172 (5%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            N +  T L +A      E+++  +         N    +  A       I      + L
Sbjct: 135 VNSEGDTPLDIAEEEAMEELLQNEV---------NRQGVDIEAARKEEERIMLRDARQWL 185

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
            S   +       G TALH AA+KG+ ++++LLI     +N KD  G T LH  A  G  
Sbjct: 186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKE 245

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKE 212
             C +L+E   +++A +K GQT    A       +  L  +       + ++
Sbjct: 246 EACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREK 297

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  158 bits (402), Expect = 1e-47
 Identities = 46/148 (31%), Positives = 64/148 (43%), Gaps = 1/148 (0%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           +   D +          IG+ T +E  + K     +K D G      A S G  + V  L
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRL 59

Query: 134 ISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNK 193
           + RGA IN  +  G TALH+     N  + + L+E GA ++  D  G  PL  A  C   
Sbjct: 60  LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYL 119

Query: 194 EVALLLIRHGADVDVEDKEGYTVLGRAS 221
           ++A  LI  GA V   + EG T L  A 
Sbjct: 120 DIAEYLISQGAHVGAVNSEGDTPLDIAE 147

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  142 bits (360), Expect = 2e-41
 Identities = 33/177 (18%), Positives = 61/177 (34%), Gaps = 15/177 (8%)

Query: 6   DQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVV 61
                + +    L  A E       ++         ++ +  D              +  
Sbjct: 131 HVGAVNSEGDTPLDIAEEEAMEELLQNE--------VNRQGVDIEAARKEEERIMLRDAR 182

Query: 62  EILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA 121
           + L S     N      + G   +H AA+ G   ++++L+    DVN+K+  G T LH A
Sbjct: 183 QWLNSGH--IN-DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAA 239

Query: 122 ASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDK 178
           A  G  +   +L+     + + +KVG TA           L EL  ++        +
Sbjct: 240 AHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKRE 296

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 77.9 bits (193), Expect = 3e-17
 Identities = 18/117 (15%), Positives = 32/117 (27%), Gaps = 34/117 (29%)

Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
           + + +   +         G    +E  + +  K   K   G   L               
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLA-------------- 46

Query: 167 IEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASND 223
                               A    + E  L L+  GAD++  + +G T L +A  D
Sbjct: 47  --------------------ACSSGDTEEVLRLLERGADINYANVDGLTALHQACID 83

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  176 bits (448), Expect = 1e-55
 Identities = 43/181 (23%), Positives = 67/181 (37%), Gaps = 7/181 (3%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           +   LL  AA  G  EVV+  +      +  +  +EEG   +H+A    N +IV+ L++ 
Sbjct: 20  NPLVLLLDAALTGELEVVQQAVKEM--NDP-SQPNEEGITALHNAICGANYSIVDFLITA 76

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD-KVGCTALHRGASTGNSAL 162
           GA+VN  +  G T LH AAS     I   L+  GA I +     G TA  +         
Sbjct: 77  GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYA 136

Query: 163 --CELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRA 220
                L +    +   +      L +    +  E+          V   D    T    A
Sbjct: 137 DCATYLADVEQSMGLMNSGAVYALWDYSAEFGDEL-SFREGESVTVLRRDGPEETDWWWA 195

Query: 221 S 221
           +
Sbjct: 196 A 196

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  168 bits (428), Expect = 2e-52
 Identities = 43/171 (25%), Positives = 67/171 (39%), Gaps = 3/171 (1%)

Query: 61  VEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHY 120
           +  +L    S              +  AA  G + +V+  + +  D +  N+ G TALH 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD-KA 179
           A       IV+ LI+ GA +NS D  G T LH  AS  ++ +C  L++ GA + AT    
Sbjct: 61  AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD 120

Query: 180 GQTPLMNAVICYN--KEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPIL 228
           G T             + A  L      + + +      L   S +F   L
Sbjct: 121 GATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDEL 171

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  150 bits (380), Expect = 3e-45
 Identities = 36/157 (22%), Positives = 55/157 (35%), Gaps = 7/157 (4%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           N++  T LH A    +  +V+ L++    AN VN+ D  GW P+H AAS  +  I   L+
Sbjct: 51  NEEGITALHNAICGANYSIVDFLITAG--AN-VNSPDSHGWTPLHCAASCNDTVICMALV 107

Query: 102 SKGADVNLKND-GGRTALHYAAS--KGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
             GA +       G TA        +G+      L      +   +     AL    S  
Sbjct: 108 QHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWD-YSAE 166

Query: 159 NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEV 195
                     E   V   D   +T    A +   +  
Sbjct: 167 FGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGY 203

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  107 bits (269), Expect = 1e-28
 Identities = 22/122 (18%), Positives = 34/122 (27%), Gaps = 7/122 (5%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD-EEGWAPIHSAASI--GNVTIV 97
            +    T LH AASC    +   L+     A +  A    +G            G     
Sbjct: 83  PDSHGWTPLHCAASCNDTVICMALVQHG--AAI-FATTLSDGATAFEKCDPYREGYADCA 139

Query: 98  EMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST 157
             L      + L N G   AL   +++     +         +  +D    T     A  
Sbjct: 140 TYLADVEQSMGLMNSGAVYALWDYSAEF-GDELSFREGESVTVLRRDGPEETDWWWAALH 198

Query: 158 GN 159
           G 
Sbjct: 199 GQ 200

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 76.1 bits (188), Expect = 5e-17
 Identities = 13/114 (11%), Positives = 31/114 (27%), Gaps = 7/114 (6%)

Query: 42  NDDDRTLLHVAASC--GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
             D  T          G+ +    L  V++S   +  ++      +   ++      +  
Sbjct: 118 LSDGATAFEKCDPYREGYADCATYLADVEQS---MGLMNSGAVYALWDYSA-EFGDELSF 173

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVE-LLISRGAKINSKDKVGCTALH 152
              +   V  ++    T   +AA  G    V         ++  +        H
Sbjct: 174 REGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHHHH 227

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  173 bits (441), Expect = 3e-55
 Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 4/156 (2%)

Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
             L  AA+ G  + V  LL   E  +  +A++  G   +      G+  I   LL +GA 
Sbjct: 4   DRLSGAAARGDVQEVRRLLH-RELVHP-DALNRFGKTALQVMMF-GSTAIALELLKQGAS 60

Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
            N+++  G + +H AA  G+L  +++L+  GA +N  D  G   +H     G++A+   L
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 167 IEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRH 202
               +++   D  G TPL  A+    +++  +L  H
Sbjct: 121 A-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  157 bits (399), Expect = 6e-49
 Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 3/142 (2%)

Query: 81  GWAPIHSAASIGNVTIVEMLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
               +  AA+ G+V  V  LL  +    +  N  G+TAL      G   I   L+ +GA 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS 60

Query: 140 INSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL 199
            N +D  G + +H  A TG     ++L+E GA+V+  D  G  P+  AV   +  V   L
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 200 IRHGADVDVEDKEGYTVLGRAS 221
               +D+   D  G T L  A 
Sbjct: 121 A-AESDLHRRDARGLTPLELAL 141

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  142 bits (362), Expect = 2e-43
 Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 5/128 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            N   +T L V    G   +   LL     A+  N  D  G +P+H AA  G +  +++L
Sbjct: 32  LNRFGKTALQVMMF-GSTAIALELLKQG--AS-PNVQDTSGTSPVHDAARTGFLDTLKVL 87

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           +  GADVN+ +  G   +H A  +G   +V  L +  + ++ +D  G T L      G  
Sbjct: 88  VEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQ 146

Query: 161 ALCELLIE 168
            L ++L  
Sbjct: 147 DLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 45.9 bits (110), Expect = 1e-06
 Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 1/44 (2%)

Query: 180 GQTPLMNAVICYN-KEVALLLIRHGADVDVEDKEGYTVLGRASN 222
               L  A    + +EV  LL R     D  ++ G T L     
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF 45

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  175 bits (445), Expect = 7e-55
 Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 8/171 (4%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             +      +    GH         +  +A+V      E   P  +AA   +   +  LL
Sbjct: 12  AGEGAMEYLIEWKDGHSPSWVPSSYI--AADV----VSEYETPWWTAARKADEQALSQLL 65

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD-KVGCTALHRGASTGNS 160
            +  DV+  ++ GRTAL + A  G  K V LL   GA ++ +D + G TALH  A     
Sbjct: 66  -EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRP 124

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDK 211
            + E L+E GA+++  D+ G T L  A            ++ G  + +E  
Sbjct: 125 EVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKV 175

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  151 bits (384), Expect = 9e-46
 Identities = 34/173 (19%), Positives = 60/173 (34%), Gaps = 15/173 (8%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE-GWAPIHSAASIGNVTIVEM 99
            +++ RT L   A  G  + V +L      A++ +  D   G   +H AA      +VE 
Sbjct: 73  VDENGRTALLFVAGLGSDKCVRLLAEAG--ADL-DHRDMRGGLTALHMAAGYVRPEVVEA 129

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN 159
           L+  GAD+ ++++ G TAL  A            +  G +I  +       +  G     
Sbjct: 130 LVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKV---INVLEGQVFE- 185

Query: 160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKE 212
                    E  E+      G+            +   +   H A+   +D E
Sbjct: 186 -------YAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYE 231

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  147 bits (373), Expect = 4e-44
 Identities = 42/150 (28%), Positives = 61/150 (40%), Gaps = 5/150 (3%)

Query: 73  VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVEL 132
           + +    EG          G+           ADV  +     T    AA K   + +  
Sbjct: 7   IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQ 63

Query: 133 LISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD-KAGQTPLMNAVICY 191
           L+     +++ D+ G TAL   A  G+     LL E GA++D  D + G T L  A    
Sbjct: 64  LLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 122

Query: 192 NKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
             EV   L+  GAD++VED+ G T L  A 
Sbjct: 123 RPEVVEALVELGADIEVEDERGLTALELAR 152

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 71.5 bits (176), Expect = 3e-15
 Identities = 9/104 (8%), Positives = 23/104 (22%), Gaps = 21/104 (20%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLS----VDESANV---------------VNAVDEEG 81
            ++   T L +A            +     +     +               +     +G
Sbjct: 140 EDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKG 199

Query: 82  WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKG 125
               +            +     A+   K+      L YA ++ 
Sbjct: 200 KDVEYLVRWKDGGDCEWVKGVHVAEDVAKD--YEDGLEYAVAES 241

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 66.9 bits (164), Expect = 2e-13
 Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 4/84 (4%)

Query: 138 AKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVAL 197
              +     G          G+S          A+V +     +TP   A    +++   
Sbjct: 6   IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALS 62

Query: 198 LLIRHGADVDVEDKEGYTVLGRAS 221
            L+    DVD  D+ G T L   +
Sbjct: 63  QLL-EDRDVDAVDENGRTALLFVA 85

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  173 bits (439), Expect = 4e-54
 Identities = 58/182 (31%), Positives = 94/182 (51%), Gaps = 3/182 (1%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
              +  + ++A S    E+ E +L+    +      D++    +H A S G+  IVE LL
Sbjct: 4   CVSNIMICNLAYSGKLDELKERILADK--SLA-TRTDQDSRTALHWACSAGHTEIVEFLL 60

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
             G  VN K+D G + LH AAS G  +IV+ L+ +GA +N+ ++ GCT LH  AS     
Sbjct: 61  QLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHE 120

Query: 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
           +  +L+E GA  DA D    T +  A    N ++  +L+ + A  +++D EG T L  A 
Sbjct: 121 IAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC 180

Query: 222 ND 223
           ++
Sbjct: 181 DE 182

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  157 bits (398), Expect = 5e-48
 Identities = 76/182 (41%), Positives = 98/182 (53%), Gaps = 3/182 (1%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            + D RT LH A S GH E+VE LL +     V N  D+ GW+P+H AAS G   IV+ L
Sbjct: 36  TDQDSRTALHWACSAGHTEIVEFLLQLG--VPV-NDKDDAGWSPLHIAASAGXDEIVKAL 92

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD    TA+HR A+ GN 
Sbjct: 93  LVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNL 152

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRA 220
            +  +L+   A  +  D  G TPL  A      E A  L+  GA + +E+KE  T L  A
Sbjct: 153 KMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212

Query: 221 SN 222
             
Sbjct: 213 KG 214

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  139 bits (352), Expect = 4e-41
 Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 5/168 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++D   + LH+AAS G  E+V+ LL        VNAV++ G  P+H AAS     I  ML
Sbjct: 69  KDDAGWSPLHIAASAGXDEIVKALLVKGAH---VNAVNQNGCTPLHYAASKNRHEIAVML 125

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L  GA+ + K+    TA+H AA+KG LK+V +L+   A  N +D  G T LH        
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERV 185

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDV 208
              + L+ +GA +   +K  +TPL  A       + L  +  G +  +
Sbjct: 186 EEAKFLVTQGASIYIENKEEKTPLQVA--KGGLGLILKRLAEGEEASM 231

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  119 bits (299), Expect = 3e-33
 Identities = 29/114 (25%), Positives = 51/114 (44%)

Query: 110 KNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEE 169
                    + A S    ++ E +++  +     D+   TALH   S G++ + E L++ 
Sbjct: 3   GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL 62

Query: 170 GAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASND 223
           G  V+  D AG +PL  A      E+   L+  GA V+  ++ G T L  A++ 
Sbjct: 63  GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK 116

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 86.8 bits (215), Expect = 6e-21
 Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 7/128 (5%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV 73
           L  AA          L +     +   ++  D T +H AA+ G+ ++V ILL    S   
Sbjct: 110 LHYAASKNRHEIAVMLLEGG--ANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS--- 164

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
            N  D EG  P+H A     V   + L+++GA + ++N   +T L  A   G L ++   
Sbjct: 165 TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKR 222

Query: 134 ISRGAKIN 141
           ++ G + +
Sbjct: 223 LAEGEEAS 230

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  162 bits (413), Expect = 2e-51
 Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 2/135 (1%)

Query: 71  ANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIV 130
            +     +  G   +H A+  G++  VE LL  G+D N+K+  G T LH A + G LK+V
Sbjct: 2   IDP--FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59

Query: 131 ELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVIC 190
           ELL+   A +N+      + LH  A  G+  + +LL+  GA  +A +  G  P+      
Sbjct: 60  ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE 119

Query: 191 YNKEVALLLIRHGAD 205
             K + LL  ++ + 
Sbjct: 120 SMKSLLLLPEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  154 bits (393), Expect = 2e-48
 Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 3/131 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            N    TLLH+A+  G    VE LL     ++  N  D  GW P+H A + G++ +VE+L
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNG--SD-PNVKDHAGWTPLHEACNHGHLKVVELL 62

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L   A VN       + LH AA  G + IV+LL+S GA  N+ +  G   +         
Sbjct: 63  LQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMK 122

Query: 161 ALCELLIEEGA 171
           +L  L  +  +
Sbjct: 123 SLLLLPEKNES 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  145 bits (369), Expect = 8e-45
 Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 1/119 (0%)

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
           G D    N  G T LH A+ KG +  VE L+  G+  N KD  G T LH   + G+  + 
Sbjct: 1   GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59

Query: 164 ELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASN 222
           ELL++  A V+ T     +PL +A    + ++  LL+ +GA  +  +  G   +    +
Sbjct: 60  ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDD 118

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  118 bits (298), Expect = 4e-34
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 3/102 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++    T LH A + GH +VVE+LL     A V N    +  +P+H AA  G+V IV++L
Sbjct: 39  KDHAGWTPLHEACNHGHLKVVELLLQHK--ALV-NTTGYQNDSPLHDAAKNGHVDIVKLL 95

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINS 142
           LS GA  N  N  G   + Y   +    ++ L     +   S
Sbjct: 96  LSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSAS 137

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  164 bits (417), Expect = 2e-51
 Identities = 26/181 (14%), Positives = 55/181 (30%), Gaps = 13/181 (7%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
            +   +  AA  G  E    L                 +  + +        I   L++K
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 104 GADVNLKNDGGRTALHYAASKG------WLKIVELLISRGAKINSKDKVGCTALHRGAST 157
           GAD+  +   G T        G        ++ ++ + +GA I +  K     + +    
Sbjct: 65  GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFN 124

Query: 158 GNSALCE-------LLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVED 210
                 E       +  + G ++   DK G T L     C       ++  +    ++++
Sbjct: 125 YFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184

Query: 211 K 211
            
Sbjct: 185 N 185

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  144 bits (366), Expect = 8e-44
 Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 18/172 (10%)

Query: 75  NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG---GRTALHYAASKGWLKIVE 131
           NA+ E  +  + +AA +G       L  KG +              L     +   KI  
Sbjct: 2   NAMSE--YRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISM 59

Query: 132 LLISRGAKINSKDKVGCTALHRGASTGN------SALCELLIEEGAEVDATDKAGQTPLM 185
            LI++GA I S+ K G T        G       + LC++ +E+GA++ A  K  +  + 
Sbjct: 60  FLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVF 119

Query: 186 NAVICYNKE-------VALLLIRHGADVDVEDKEGYTVLGRASNDFRPILID 230
             +  Y  +         L+  + G  + ++DK G T L       +PI + 
Sbjct: 120 KNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALK 171

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  107 bits (268), Expect = 4e-29
 Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 16/118 (13%)

Query: 41  RNDDDRTLLHVAASCGH------PEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNV 94
           R  +  TL       G        E+ +I L  ++ A+ + A+ +     +        V
Sbjct: 71  RTKEGTTLFFPLFQGGGNDITGTTELCKIFL--EKGAD-ITALYKPYKIVVFKNIFNYFV 127

Query: 95  TIVEM-------LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
              EM           G  + +K+  G TAL +         ++++     K N K+ 
Sbjct: 128 DENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKEN 185

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 14/85 (16%)

Query: 4   DIDQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKS-----LSLRNDDDRTLLHVAAS 54
           DI      K     +FK          + +   +L+ S     L +++    T L     
Sbjct: 106 DIT--ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKR 163

Query: 55  CGHPEVVEILLSVDESANVVNAVDE 79
           C  P  ++++   D      N  + 
Sbjct: 164 CQKPIALKMME--DYIKK-YNLKEN 185

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  157 bits (399), Expect = 2e-49
 Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 2/133 (1%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           ++ +     A + +AA+ G V  V  LL  GAD N  N  GR  +      G  ++ ELL
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELL 63

Query: 134 ISRGAKINSKDKVGCT-ALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYN 192
           +  GA+ N  D    T  +H  A  G      +L   GA +D  D  G+ P+  A    +
Sbjct: 64  LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGH 123

Query: 193 KEVALLLIRHGAD 205
           +++A  L     D
Sbjct: 124 RDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  146 bits (370), Expect = 5e-45
 Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 5/132 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
                   L  AA+ G  E V  LL     A+  NA++  G  PI      G+  + E+L
Sbjct: 8   LGGSSDAGLATAAARGQVETVRQLLEAG--ADP-NALNRFGRRPIQVMMM-GSAQVAELL 63

Query: 101 LSKGADVNLKNDGGRT-ALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN 159
           L  GA+ N  +    T  +H AA +G+L  + +L   GA+++  D  G   +      G+
Sbjct: 64  LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGH 123

Query: 160 SALCELLIEEGA 171
             +   L     
Sbjct: 124 RDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  137 bits (347), Expect = 2e-41
 Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
              +++        L  AA++G ++ V  L+  GA  N+ ++ G   +      G++ + 
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQV-MMMGSAQVA 60

Query: 164 ELLIEEGAEVDATDKAGQT-PLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
           ELL+  GAE +  D A  T P+ +A      +  ++L R GA +DV D  G   +  A 
Sbjct: 61  ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAE 119

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 59.8 bits (146), Expect = 9e-12
 Identities = 8/53 (15%), Positives = 15/53 (28%)

Query: 170 GAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASN 222
              +     +    L  A      E    L+  GAD +  ++ G   +     
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM 54

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  157 bits (400), Expect = 3e-49
 Identities = 37/145 (25%), Positives = 56/145 (38%), Gaps = 2/145 (1%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
             +  E     + +AA+ G V  V  LL  GA+ N  N  GR  +      G  ++ ELL
Sbjct: 5   AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELL 63

Query: 134 ISRGAKINSKDKVGCT-ALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYN 192
           +  GA+ N  D    T  +H  A  G      +L   GA +D  D  G+ P+  A    +
Sbjct: 64  LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGH 123

Query: 193 KEVALLLIRHGADVDVEDKEGYTVL 217
           ++VA  L          +       
Sbjct: 124 RDVARYLRAAAGGTRGSNHARIDAA 148

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  152 bits (387), Expect = 3e-47
 Identities = 36/147 (24%), Positives = 58/147 (39%), Gaps = 5/147 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
            +     L  AA+ G  E V  LL     AN  NA +  G  PI      G+  + E+LL
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEAG--ANP-NAPNSYGRRPIQVMMM-GSARVAELLL 64

Query: 102 SKGADVNLKNDGGRT-ALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
             GA+ N  +    T  +H AA +G+L  + +L   GA+++ +D  G   +      G+ 
Sbjct: 65  LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHR 124

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNA 187
            +   L         ++ A        
Sbjct: 125 DVARYLRAAAGGTRGSNHARIDAAEGP 151

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  129 bits (326), Expect = 4e-38
 Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 4/122 (3%)

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           +   A  +++       L  AA++G ++ V  L+  GA  N+ +  G   +      G++
Sbjct: 1   MEPAAGSSMEP--SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQV-MMMGSA 57

Query: 161 ALCELLIEEGAEVDATDKAGQT-PLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGR 219
            + ELL+  GAE +  D A  T P+ +A      +  ++L R GA +DV D  G   +  
Sbjct: 58  RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL 117

Query: 220 AS 221
           A 
Sbjct: 118 AE 119

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  123 bits (312), Expect = 7e-36
 Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 5/113 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW-APIHSAASIGNVTIVEM 99
            N   R  + V    G   V E+LL     A   N  D      P+H AA  G +  + +
Sbjct: 41  PNSYGRRPIQVMMM-GSARVAELLLLHG--AEP-NCADPATLTRPVHDAAREGFLDTLVV 96

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALH 152
           L   GA +++++  GR  +  A   G   +   L +        +     A  
Sbjct: 97  LHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 85.2 bits (212), Expect = 4e-21
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 9/92 (9%)

Query: 41  RNDDDRTL-LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
            +    T  +H AA  G  + + +L      A + +  D  G  P+  A  +G+  +   
Sbjct: 73  ADPATLTRPVHDAAREGFLDTLVVLHRAG--ARL-DVRDAWGRLPVDLAEELGHRDVARY 129

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
           L +           G       A++G   I +
Sbjct: 130 LRAAAGGTR-----GSNHARIDAAEGPSDIPD 156

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  155 bits (396), Expect = 5e-49
 Identities = 62/128 (48%), Positives = 85/128 (66%), Gaps = 3/128 (2%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           + RT LH+AA  GH EVV++LL     A+V NA D+ G  P+H AA  G++ +V++LL  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAG--ADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
           GADVN K+  GRT LH AA  G L++V+LL+  GA +N+KDK G T LH  A  G+  + 
Sbjct: 58  GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV 117

Query: 164 ELLIEEGA 171
           +LL+E GA
Sbjct: 118 KLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  154 bits (393), Expect = 2e-48
 Identities = 59/124 (47%), Positives = 81/124 (65%)

Query: 81  GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
           G  P+H AA  G++ +V++LL  GADVN K+  GRT LH AA  G L++V+LL+  GA +
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 141 NSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLI 200
           N+KDK G T LH  A  G+  + +LL+E GA+V+A DK G+TPL  A    + EV  LL+
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121

Query: 201 RHGA 204
             GA
Sbjct: 122 EAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  132 bits (336), Expect = 7e-40
 Identities = 52/108 (48%), Positives = 70/108 (64%)

Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEV 173
           GRT LH AA  G L++V+LL+  GA +N+KDK G T LH  A  G+  + +LL+E GA+V
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 174 DATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
           +A DK G+TPL  A    + EV  LL+  GADV+ +DK G T L  A+
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 109

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  121 bits (307), Expect = 1e-35
 Identities = 47/98 (47%), Positives = 66/98 (67%), Gaps = 3/98 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ + RT LH+AA  GH EVV++LL     A+ VNA D+ G  P+H AA  G++ +V++L
Sbjct: 31  KDKNGRTPLHLAARNGHLEVVKLLLEAG--AD-VNAKDKNGRTPLHLAARNGHLEVVKLL 87

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
           L  GADVN K+  GRT LH AA  G L++V+LL+  GA
Sbjct: 88  LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  156 bits (396), Expect = 9e-49
 Identities = 44/132 (33%), Positives = 77/132 (58%)

Query: 71  ANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIV 130
           ++  +    +    +  AA  G    V +L++ GADVN K++ G T L+ A + G L+IV
Sbjct: 4   SHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIV 63

Query: 131 ELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVIC 190
           E+L+  GA +N+ D +G T LH  A  G+  + E+L++ GA+V+A DK G+T    ++  
Sbjct: 64  EVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGN 123

Query: 191 YNKEVALLLIRH 202
            N+++A +L + 
Sbjct: 124 GNEDLAEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  149 bits (378), Expect = 4e-46
 Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 3/125 (2%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           D    L  AA  G  + V IL++    A+ VNA DE G  P++ A + G++ IVE+LL  
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANG--AD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKN 69

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
           GADVN  +  G T LH AA  G L+I E+L+  GA +N++DK G TA       GN  L 
Sbjct: 70  GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLA 129

Query: 164 ELLIE 168
           E+L +
Sbjct: 130 EILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  138 bits (350), Expect = 7e-42
 Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 1/120 (0%)

Query: 103 KGADVNLKNDG-GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
           +G+  +  +       L  AA  G    V +L++ GA +N+KD+ G T L+   + G+  
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLE 61

Query: 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
           + E+L++ GA+V+A D  G TPL  A    + E+A +L++HGADV+ +DK G T    + 
Sbjct: 62  IVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISI 121

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  115 bits (292), Expect = 3e-33
 Identities = 38/95 (40%), Positives = 58/95 (61%), Gaps = 3/95 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +++   T L++A + GH E+VE+LL     A+ VNAVD  G+ P+H AA IG++ I E+L
Sbjct: 43  KDEYGLTPLYLATAHGHLEIVEVLLKNG--AD-VNAVDAIGFTPLHLAAFIGHLEIAEVL 99

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS 135
           L  GADVN ++  G+TA   +   G   + E+L  
Sbjct: 100 LKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  151 bits (384), Expect = 1e-45
 Identities = 48/243 (19%), Positives = 77/243 (31%), Gaps = 49/243 (20%)

Query: 14  LFKAAETGDSSTFKSL------SKQQLLKSLSLRNDDDRTLLHVAA---SCGHPEVVEIL 64
           LF     G       L      + + L  S        +T L  A      G    +  L
Sbjct: 6   LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPL 65

Query: 65  LSVDESANV--------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG--- 113
           L +D+ +                +G + +H A    ++  V++L+  GADV+L+  G   
Sbjct: 66  LQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFF 125

Query: 114 ----------GRTALHYAASKGWLKIVELLISRG---AKINSKDKVGCTALHRGA----- 155
                     G   L  AA      +V  L+      A + + D +G T LH        
Sbjct: 126 QKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADN 185

Query: 156 STGNSAL-----------CELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGA 204
           S  NSAL              L       + ++  G TPL  A      E+   +++   
Sbjct: 186 SPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREF 245

Query: 205 DVD 207
              
Sbjct: 246 SGA 248

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  110 bits (276), Expect = 1e-29
 Identities = 27/169 (15%), Positives = 44/169 (26%), Gaps = 29/169 (17%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLS----VDESAN------VVNAVDEEGWAPIHSAAS 90
                 + LH+A      + V++L+     V   A               G  P+  AA 
Sbjct: 86  EFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAAC 145

Query: 91  IGNVTIVEMLLSKG---ADVNLKNDGGRTAL----------------HYAASKGWLKIVE 131
                +V  LL      A +   +  G T L                      G L++  
Sbjct: 146 TKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGA 205

Query: 132 LLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
            L          +  G T L   A  G   +   +++      A     
Sbjct: 206 RLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHH 254

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 77.1 bits (190), Expect = 3e-17
 Identities = 21/153 (13%), Positives = 41/153 (26%), Gaps = 33/153 (21%)

Query: 84  PIHSAASIGNVTIVEMLLSK--------GADVNLKNDGGRTALHYAA---SKGWLKIVEL 132
            + S  S G    +  LL                +   G+T L  A      G    +  
Sbjct: 5   RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64

Query: 133 LISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYN 192
           L+       +   +                        A+       G + L  A+   +
Sbjct: 65  LLQIDKDSGNPKPLV----------------------NAQCTDEFYQGHSALHIAIEKRS 102

Query: 193 KEVALLLIRHGADVDVEDKEGYTVLGRASNDFR 225
            +   LL+ +GADV +     +    + +  + 
Sbjct: 103 LQCVKLLVENGADVHLRACGRFFQKHQGTCFYF 135

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  145 bits (369), Expect = 5e-45
 Identities = 46/111 (41%), Positives = 65/111 (58%), Gaps = 3/111 (2%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           + D  T LH AA  GH E V+ LLS    A+V NA  ++G  P+H AA  G+  IV++LL
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKG--ADV-NARSKDGNTPLHLAAKNGHAEIVKLLL 62

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALH 152
           +KGADVN ++  G T  H A   G  +IV+LL ++GA +N++        H
Sbjct: 63  AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  141 bits (359), Expect = 1e-43
 Identities = 41/107 (38%), Positives = 63/107 (58%)

Query: 78  DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG 137
            ++G  P+H+AA  G+   V+ LLSKGADVN ++  G T LH AA  G  +IV+LL+++G
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65

Query: 138 AKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
           A +N++ K G T  H     G+  + +LL  +GA+V+A         
Sbjct: 66  ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  135 bits (342), Expect = 6e-41
 Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 2/114 (1%)

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
           G      +  G T LH AA  G  + V+ L+S+GA +N++ K G T LH  A  G++ + 
Sbjct: 1   GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58

Query: 164 ELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVL 217
           +LL+ +GA+V+A  K G TP   A    + E+  LL   GADV+          
Sbjct: 59  KLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 97.8 bits (245), Expect = 2e-26
 Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 3/80 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R+ D  T LH+AA  GH E+V++LL+    A+V NA  ++G  P H A   G+  IV++L
Sbjct: 38  RSKDGNTPLHLAAKNGHAEIVKLLLAKG--ADV-NARSKDGNTPEHLAKKNGHHEIVKLL 94

Query: 101 LSKGADVNLKNDGGRTALHY 120
            +KGADVN ++ G     H+
Sbjct: 95  DAKGADVNARSWGSSHHHHH 114

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  142 bits (362), Expect = 7e-44
 Identities = 36/112 (32%), Positives = 54/112 (48%)

Query: 76  AVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS 135
            +          A   G++  V+  ++KG DVN   +GGR  LHYAA  G L+I+E L+ 
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL 61

Query: 136 RGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
           +GA IN+ DK   T L      G+ +  +LL+ +GA+       G T     
Sbjct: 62  KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  141 bits (358), Expect = 3e-43
 Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 3/123 (2%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
                     A   G  + V+  ++     +V N   E G  P+H AA  G + I+E LL
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKG--EDV-NRTLEGGRKPLHYAADCGQLEILEFLL 60

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
            KGAD+N  +    T L  A  +G +  V+LL+S+GA    K   G TA     +    A
Sbjct: 61  LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKA 120

Query: 162 LCE 164
           L +
Sbjct: 121 LLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  129 bits (326), Expect = 2e-38
 Identities = 32/114 (28%), Positives = 51/114 (44%)

Query: 110 KNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEE 169
                     +A   G L  V+  +++G  +N   + G   LH  A  G   + E L+ +
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62

Query: 170 GAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASND 223
           GA+++A DK   TPL++AV   +     LL+  GAD  V+  +G T      N 
Sbjct: 63  GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQ 116

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  109 bits (274), Expect = 1e-30
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
             +  R  LH AA CG  E++E LL     A+ +NA D+    P+ SA   G+V+ V++L
Sbjct: 36  TLEGGRKPLHYAADCGQLEILEFLLLKG--AD-INAPDKHHITPLLSAVYEGHVSCVKLL 92

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
           LSKGAD  +K   G TA     ++    +++
Sbjct: 93  LSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 47.0 bits (113), Expect = 3e-07
 Identities = 8/47 (17%), Positives = 15/47 (31%)

Query: 175 ATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
                     M A+   + +     +  G DV+   + G   L  A+
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAA 48

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  144 bits (364), Expect = 1e-42
 Identities = 51/248 (20%), Positives = 77/248 (31%), Gaps = 54/248 (21%)

Query: 12  KDLFKAAETGDSSTFKSLSKQQLLKSL--------SLRNDDDRTLLHVAA---SCGHPEV 60
             LF     G     + L     L +                +T L  A    S G  + 
Sbjct: 7   PILFDIVSRGSPDGLEGLLS--FLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 61  VEILLSVDESANV--------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND 112
           + ILL + E               V   G   +H A        VE+L+ KGADV+ +  
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124

Query: 113 G--------------GRTALHYAASKGWLKIVELLISRG---AKINSKDKVGCTALHRGA 155
           G              G   L  AA      IV  L   G   A +  +D  G T LH   
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALV 184

Query: 156 STGN---------SALCELLIEEGAEVDAT-------DKAGQTPLMNAVICYNKEVALLL 199
           +  +         + + +LL+ + A++          +  G +PLM A       +   +
Sbjct: 185 AIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244

Query: 200 IRHGADVD 207
           IR      
Sbjct: 245 IRREIADA 252

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  127 bits (320), Expect = 5e-36
 Identities = 42/225 (18%), Positives = 72/225 (32%), Gaps = 52/225 (23%)

Query: 45  DRTLLHVAASCG----HPEVVEILLSVDESANVVNAV-DEEGWAPIHSAA---SIGNVTI 96
           +R +L    S G       ++  LL+  +            G   +  A    S G    
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 97  VEMLLSKGAD-----------VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           + +LL                       G+TALH A  +     VELL+ +GA ++++ +
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124

Query: 146 V--------------GCTALHRGASTGNSALCELLIEEG---AEVDATDKAGQTPLMNAV 188
                          G   L   A T    +   L E G   A++   D  G T L   V
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALV 184

Query: 189 ICYNK---------EVALLLIRHGADVD-------VEDKEGYTVL 217
              +          ++  LL+   A +        + + +G + L
Sbjct: 185 AIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPL 229

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  109 bits (273), Expect = 5e-29
 Identities = 36/171 (21%), Positives = 55/171 (32%), Gaps = 30/171 (17%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLS----VDESAN-------VVNAVDEEGWAPIHSAA 89
                +T LH+A        VE+L+     V   A                G  P+  AA
Sbjct: 89  VYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAA 148

Query: 90  SIGNVTIVEMLLSKG---ADVNLKNDGGRTALHYAA---------SKGWLKIVELLISRG 137
                 IV  L   G   AD+  ++  G T LH            +K   K+ +LL+ + 
Sbjct: 149 CTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC 208

Query: 138 AKINSK-------DKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQ 181
           AK+          +  G + L   A TG   + + +I       A      
Sbjct: 209 AKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHH 259

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 82.9 bits (205), Expect = 2e-19
 Identities = 25/152 (16%), Positives = 44/152 (28%), Gaps = 33/152 (21%)

Query: 84  PIHSAASIGNVT----IVEMLLSKGADVNLKN----DGGRTALHYAA---SKGWLKIVEL 132
            +    S G+      ++  LL+    +  +       G+T L  A    S G    + +
Sbjct: 8   ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPI 67

Query: 133 LISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYN 192
           L+    K  +  +                         +        GQT L  A+    
Sbjct: 68  LLDIAEKTGNMREFI----------------------NSPFRDVYYRGQTALHIAIERRC 105

Query: 193 KEVALLLIRHGADVDVEDKEGYTVLGRASNDF 224
           K    LL+  GADV  + +  +         F
Sbjct: 106 KHYVELLVEKGADVHAQARGRFFQPKDEGGYF 137

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  140 bits (355), Expect = 4e-41
 Identities = 51/254 (20%), Positives = 83/254 (32%), Gaps = 56/254 (22%)

Query: 4   DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDD-------RTLLHVA---A 53
             D+      +F A    +    +SL    L +S     D +       +T L  A    
Sbjct: 11  LYDRRS----IFDAVAQSNCQELESL-LPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNL 65

Query: 54  SCGHPEVVEILLSVDESANV--------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
             G  + + +LL V    +               +G   +H A    N+T+V +L+  GA
Sbjct: 66  HNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGA 125

Query: 106 DVNLKNDG--------------GRTALHYAASKGWLKIVELLISRG---AKINSKDKVGC 148
           DV    +G              G   L  AA    L IV+ L+      A I+++D VG 
Sbjct: 126 DVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGN 185

Query: 149 TALHRGASTGNSALCE----------------LLIEEGAEVDATDKAGQTPLMNAVICYN 192
           T LH      ++ +                   L       + T++ G TPL  A     
Sbjct: 186 TVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK 245

Query: 193 KEVALLLIRHGADV 206
             V   +++     
Sbjct: 246 IGVLAYILQREIHE 259

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  131 bits (332), Expect = 1e-37
 Identities = 41/232 (17%), Positives = 72/232 (31%), Gaps = 52/232 (22%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDES-----ANVVNAVDEEGWAPIHSAASI---GN 93
              DR  +  A +  + + +E LL   +       +      E G   +  A      G 
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQ 69

Query: 94  VTIVEMLLSKGAD-----------VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINS 142
              + +LL                       G+TALH A  +  + +V LL+  GA + +
Sbjct: 70  NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA 129

Query: 143 KDK--------------VGCTALHRGASTGNSALCELLIEEG---AEVDATDKAGQTPLM 185
                             G   L   A T   A+ + L++     A++ A D  G T L 
Sbjct: 130 AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLH 189

Query: 186 NAVICYNK----------------EVALLLIRHGADVDVEDKEGYTVLGRAS 221
             V   +                  +   L       ++ +++G T L  A+
Sbjct: 190 ALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAA 241

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  114 bits (287), Expect = 4e-31
 Identities = 42/186 (22%), Positives = 57/186 (30%), Gaps = 39/186 (20%)

Query: 75  NAVDEEGWAPIHSAASIGNVTIVEMLL-------SKGADVNLK-NDGGRTALHYA---AS 123
                     I  A +  N   +E LL        +  D   K  + G+T L  A     
Sbjct: 7   KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLH 66

Query: 124 KGWLKIVELLISRGAKI-----------NSKDKVGCTALHRGASTGNSALCELLIEEGAE 172
            G    + LL+    K                  G TALH      N  L  LL+E GA+
Sbjct: 67  NGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD 126

Query: 173 VDATDK--------------AGQTPLMNAVICYNKEVALLLIRHG---ADVDVEDKEGYT 215
           V A                  G+ PL  A       +   L+++    AD+   D  G T
Sbjct: 127 VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNT 186

Query: 216 VLGRAS 221
           VL    
Sbjct: 187 VLHALV 192

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 99.1 bits (247), Expect = 3e-25
 Identities = 23/130 (17%), Positives = 40/130 (30%), Gaps = 23/130 (17%)

Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM------ 99
              L +AA      +V+ LL        ++A D  G   +H+   + + T+         
Sbjct: 149 ELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSM 208

Query: 100 ----------LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCT 149
                     L        + N  G T L  AAS G + ++  ++ R             
Sbjct: 209 YNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPE 261

Query: 150 ALHRGASTGN 159
             H  A   +
Sbjct: 262 CRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 89.1 bits (221), Expect = 1e-21
 Identities = 28/145 (19%), Positives = 47/145 (32%), Gaps = 22/145 (15%)

Query: 102 SKGADVNLKNDGGRTALHYAASKG-------WLKIVELLISRGAKINSKD-KVGCTALHR 153
           S  A         R ++  A ++         L  ++    R      KD + G T L +
Sbjct: 1   SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLK 60

Query: 154 ---GASTGNSALCELLIEEGAEVDAT-----------DKAGQTPLMNAVICYNKEVALLL 199
                  G +    LL++   + D+               GQT L  A+   N  +  LL
Sbjct: 61  AMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLL 120

Query: 200 IRHGADVDVEDKEGYTVLGRASNDF 224
           + +GADV       +    +    F
Sbjct: 121 VENGADVQAAANGDFFKKTKGRPGF 145

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  133 bits (335), Expect = 1e-37
 Identities = 32/196 (16%), Positives = 65/196 (33%), Gaps = 23/196 (11%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNV----TIV 97
           ++   T LH   S  + E+V+ L+     +N     D  G + +  A    N     T  
Sbjct: 128 DEHGNTPLHWLTSIANLELVKHLVK--HGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFE 184

Query: 98  EMLLSKGADVNLKNDGGRTALHYAASKGWLK------------IVELLISRGAKINSKDK 145
            +L      + L++   RT LH+      +             ++  ++ +  +      
Sbjct: 185 ALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT 244

Query: 146 VGCTALHRGASTGNSALCELLIEEGAE----VDATDKAGQTPLMNAVICYNKEVALLLIR 201
               +     +          ++        ++A D  G T L  A    N  +   L+ 
Sbjct: 245 NEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD 304

Query: 202 HGADVDVEDKEGYTVL 217
           +GAD  + +K G   +
Sbjct: 305 YGADPFIANKSGLRPV 320

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  124 bits (312), Expect = 3e-34
 Identities = 37/200 (18%), Positives = 66/200 (33%), Gaps = 22/200 (11%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
              ++   HV+      EV +   +     N+   VDE G  P+H   SI N+ +V+ L+
Sbjct: 94  GSSNQQQQHVSFDSLLQEVNDAFPNTQ--LNLNIPVDEHGNTPLHWLTSIANLELVKHLV 151

Query: 102 SKGADVNLKNDGGRTALHYAASKG----WLKIVELLISRGAKINSKDKVGCTALHRGAST 157
             G++    ++ G + L  A              LL      +  +D +  T LH    T
Sbjct: 152 KHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIIT 211

Query: 158 GNS------------ALCELLIEEGAEVDATDKAGQTPLMNAVICYNK----EVALLLIR 201
                           L   ++++      +    +    N      K    E   L   
Sbjct: 212 SGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWI 271

Query: 202 HGADVDVEDKEGYTVLGRAS 221
               ++ +D  G T L  A+
Sbjct: 272 IANMLNAQDSNGDTCLNIAA 291

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  100 bits (251), Expect = 2e-25
 Identities = 25/167 (14%), Positives = 54/167 (32%), Gaps = 21/167 (12%)

Query: 41  RNDDDRTLLHVAASCGH---PEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT-- 95
            ++   + L  A    +       E LL        +   D      +H       +T  
Sbjct: 160 GDNMGESCLVKAVKSVNNYDSGTFEALLD--YLYPCLILEDSMNRTILHHIIITSGMTGC 217

Query: 96  ----------IVEMLLSKGADVNLKNDGGRTALHYAA----SKGWLKIVELLISRGAKIN 141
                     ++  ++ K           + +             L+ ++L       +N
Sbjct: 218 SAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLN 277

Query: 142 SKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV 188
           ++D  G T L+  A  GN ++ + L++ GA+    +K+G  P+    
Sbjct: 278 AQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 91.6 bits (227), Expect = 5e-22
 Identities = 35/168 (20%), Positives = 60/168 (35%), Gaps = 19/168 (11%)

Query: 9   IKDKD----LFKAAETGDSSTFKSLSK--QQLLKSLSLRNDDDRTLLHVAASC----GHP 58
             D      L KA ++ ++    +       L   L L +  +RT+LH         G  
Sbjct: 159 YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCS 218

Query: 59  EVVEILLS------VDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK---GADVNL 109
              +  L       V +    + +   E  +  +        +I+E L  K      +N 
Sbjct: 219 AAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA 278

Query: 110 KNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST 157
           ++  G T L+ AA  G + IV+ L+  GA     +K G   +  GA  
Sbjct: 279 QDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL 326

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 77.0 bits (189), Expect = 8e-17
 Identities = 22/129 (17%), Positives = 45/129 (34%), Gaps = 2/129 (1%)

Query: 94  VTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHR 153
           + I++ L S   + N +       L         ++   L +  +  NS+          
Sbjct: 43  LKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQH 102

Query: 154 GASTGNS-ALCELLIEEGAEVDA-TDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDK 211
            +       + +        ++   D+ G TPL       N E+   L++HG++    D 
Sbjct: 103 VSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN 162

Query: 212 EGYTVLGRA 220
            G + L +A
Sbjct: 163 MGESCLVKA 171

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  121 bits (306), Expect = 8e-36
 Identities = 44/91 (48%), Positives = 61/91 (67%)

Query: 81  GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
           G  P+H AA  G++ +V++LL  GADVN K+  GRT LH AA  G L++V+LL+  GA +
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 141 NSKDKVGCTALHRGASTGNSALCELLIEEGA 171
           N+KDK G T LH  A  G+  + +LL+E GA
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  120 bits (305), Expect = 1e-35
 Identities = 47/95 (49%), Positives = 64/95 (67%), Gaps = 3/95 (3%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           + RT LH+AA  GH EVV++LL     A+V NA D+ G  P+H AA  G++ +V++LL  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEA--GADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
           GADVN K+  GRT LH AA  G L++V+LL+  GA
Sbjct: 58  GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  112 bits (284), Expect = 1e-32
 Identities = 44/91 (48%), Positives = 59/91 (64%)

Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEV 173
           GRT LH AA  G L++V+LL+  GA +N+KDK G T LH  A  G+  + +LL+E GA+V
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 174 DATDKAGQTPLMNAVICYNKEVALLLIRHGA 204
           +A DK G+TPL  A    + EV  LL+  GA
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  120 bits (303), Expect = 4e-35
 Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 6/115 (5%)

Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
            +S  H      L+     +++      +    +  AA  G    V +L++ GADV  K+
Sbjct: 1   GSSHHHHHHSSGLVPRG--SHM----GSDLGKKLLEAARAGQDDEVRILMANGADVAAKD 54

Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
             G T LH AA  G L++V+LL+  GA + ++DK G TA       GN  L E+L
Sbjct: 55  KNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  117 bits (296), Expect = 4e-34
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 3/112 (2%)

Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
            +S  +      L+ +G+ +          L  AA  G    V +L++ GA + +KDK G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL 199
            T LH  A  G+  + +LL+E GA+V A DK G+T    ++   N+++A +L
Sbjct: 58  STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  104 bits (262), Expect = 4e-29
 Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 3/103 (2%)

Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
            +S         L+ RG+ + S        L   A  G      +L+  GA+V A DK G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASND 223
            TPL  A    + EV  LL+  GADV  +DK G T    + ++
Sbjct: 58  STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN 100

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 98.0 bits (245), Expect = 2e-26
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             D    L  AA  G  + V IL++    A+ V A D+ G  P+H AA  G++ +V++LL
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRILMANG--AD-VAAKDKNGSTPLHLAARNGHLEVVKLLL 77

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
             GADV  ++  G+TA   +   G   + E+L
Sbjct: 78  EAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ +  T LH+AA  GH EVV++LL     A+ V A D+ G      +   GN  + E+L
Sbjct: 53  KDKNGSTPLHLAARNGHLEVVKLLLEAG--AD-VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  108 bits (272), Expect = 4e-28
 Identities = 31/245 (12%), Positives = 66/245 (26%), Gaps = 39/245 (15%)

Query: 2   DMDIDQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGH 57
             D    +   +       AAE G       L +    + +++   ++     +AA  GH
Sbjct: 116 TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGH 175

Query: 58  PEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTA 117
             V+  L  +  +        E  +A   +A   G+  ++  LL     +          
Sbjct: 176 LHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEI----- 230

Query: 118 LHYAASKGWLKIVELLISRGAKIN--------------------SKDKVGCTALHRGAST 157
             +    G   +   +     ++                     S+   G   L      
Sbjct: 231 --HEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRR 288

Query: 158 GNSALCELL--------IEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVE 209
            +  L + +        I+  A            L  A+   N+    LL+   + + + 
Sbjct: 289 NDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALT 348

Query: 210 DKEGY 214
               Y
Sbjct: 349 KANNY 353

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  101 bits (253), Expect = 2e-25
 Identities = 25/218 (11%), Positives = 49/218 (22%), Gaps = 11/218 (5%)

Query: 5   IDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEIL 64
           I   + +          + S      K+ +   L    + ++    +     H       
Sbjct: 21  IPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQ 80

Query: 65  LSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASK 124
           L     A+      E              +  + +LL+    V +       A   AA  
Sbjct: 81  LW--SDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN 138

Query: 125 GWLKIVELLISRGAKINSKDKV--GCTALHRGASTGNSALCELLIEEGAEVDATD--KAG 180
           G L ++  L                  A    A  G+  +   L E              
Sbjct: 139 GHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAEN 198

Query: 181 QTPLMNAVICYNK---EVALLLIRHGADVDVEDKEGYT 215
                 A     +    V   L+     +   +   + 
Sbjct: 199 YYAFRWA--AVGRGHHNVINFLLDCPVMLAYAEIHEFE 234

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 70.0 bits (171), Expect = 3e-14
 Identities = 21/206 (10%), Positives = 45/206 (21%), Gaps = 41/206 (19%)

Query: 29  LSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA 88
                   +  ++ ++       A   GH  V+  LL       +  A            
Sbjct: 183 CELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP--VMLAYAEIH--------E 232

Query: 89  ASIGNVTIVEMLLSKGADVNLKND--------------------GGRTALHYAASKGWLK 128
              G   +   +      +   +D                     G   L     +    
Sbjct: 233 FEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEV 292

Query: 129 IVELL--------ISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
           +++ +        I   A   +        L      GN   C LL+   + +  T    
Sbjct: 293 LLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTK--- 349

Query: 181 QTPLMNAVICYNKEVALLLIRHGADV 206
                        ++  + + H    
Sbjct: 350 ANNYYINETGGRLDLRAVALEHHHHH 375

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 46.5 bits (110), Expect = 3e-06
 Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 6/81 (7%)

Query: 28  SLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS 87
           S+   + L   +    D   LL +A   G+     +LLS+     +  A         + 
Sbjct: 302 SIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKA------NNYYI 355

Query: 88  AASIGNVTIVEMLLSKGADVN 108
             + G + +  + L      +
Sbjct: 356 NETGGRLDLRAVALEHHHHHH 376

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 86.4 bits (213), Expect = 6e-20
 Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 2/136 (1%)

Query: 66  SVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG--GRTALHYAAS 123
           S  E  +        G     ++    ++  +   L+ GADVN  N G    T L  A +
Sbjct: 185 SKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATA 244

Query: 124 KGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTP 183
              L   E L+  GA +N  D  G   LH     G++ L  L ++ GA++ A D  G+ P
Sbjct: 245 ANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDP 304

Query: 184 LMNAVICYNKEVALLL 199
           L  A+   N ++  LL
Sbjct: 305 LTIAMETANADIVTLL 320

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 70.2 bits (171), Expect = 3e-14
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 2/109 (1%)

Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSK--DKVGCTALHRGASTGNSALCELLIEEGA 171
           G      +     L  +   ++ GA +N     +   T L +  +  +   CE L++ GA
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA 259

Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRA 220
            V+  D AG+ PL +A I  +  +A L ++ GAD+   D EG   L  A
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 80.8 bits (199), Expect = 2e-18
 Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 9/124 (7%)

Query: 86  HSAASIGNVTIVEMLLSKGADVNLK------NDGGRTALHYAASKG---WLKIVELLISR 136
             A    ++  +    + G D+  K      ++   TALH A        L IV+ L+  
Sbjct: 135 CEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN 194

Query: 137 GAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVA 196
              ++ +   G TALH    T N+   +LL+   A ++  +++G+TPL  A    ++   
Sbjct: 195 SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCE 254

Query: 197 LLLI 200
            LL 
Sbjct: 255 ELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 80.8 bits (199), Expect = 2e-18
 Identities = 21/98 (21%), Positives = 41/98 (41%)

Query: 37  SLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTI 96
            L+  ++ D T LH+A        + I+  + +++  ++    +G   +H      N   
Sbjct: 161 PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAEC 220

Query: 97  VEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
           +++LL   A + + N+ G T L  A         ELL 
Sbjct: 221 LKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 78.9 bits (194), Expect = 1e-17
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 3/94 (3%)

Query: 78  DEEGWAPIHSAASIGN---VTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
            E     +H A    +   + IV+ L+    +++ +   G TALHY       + ++LL+
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225

Query: 135 SRGAKINSKDKVGCTALHRGASTGNSALCELLIE 168
              A I   ++ G T L       +    ELL +
Sbjct: 226 RGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 65.4 bits (159), Expect = 7e-13
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 147 GCTALH---RGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHG 203
             TALH   R     +  + + L++    +D     G T L    +  N E   LL+R  
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGK 228

Query: 204 ADVDVEDKEGYTVLGRA 220
           A +++ ++ G T L  A
Sbjct: 229 ASIEIANESGETPLDIA 245

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 79.6 bits (196), Expect = 7e-18
 Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 9/126 (7%)

Query: 84  PIHSAASIGNVTIVEMLLSKGADVNLKNDG------GRTALHYAASKGW---LKIVELLI 134
            + +A    ++  V    + G D      G          LH A        L +V+ +I
Sbjct: 154 RLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFII 213

Query: 135 SRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
             G  +++K   G TALH  A        +LL++  A V   ++AG+T L  A   ++KE
Sbjct: 214 QNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKE 273

Query: 195 VALLLI 200
              LL 
Sbjct: 274 CEELLE 279

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 79.3 bits (195), Expect = 1e-17
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 78  DEEGWAPIHSAASIGNVT---IVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
                  +H A  + N     +V+ ++  G  ++ K   G TALHYAA       ++LL+
Sbjct: 187 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL 246

Query: 135 SRGAKINSKDKVGCTALHRGASTGNSALCELLIE 168
              A + + ++ G TAL       +    ELL +
Sbjct: 247 KGRALVGTVNEAGETALDIARKKHHKECEELLEQ 280

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 73.9 bits (181), Expect = 1e-15
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 8/103 (7%)

Query: 42  NDDDRTLLHVAASCGHP---EVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
              +  +LH+A    +     +V+ ++      ++ +A   +G   +H AA       ++
Sbjct: 187 QAPEELVLHLAVKVANQASLPLVDFIIQ--NGGHL-DAKAADGNTALHYAALYNQPDCLK 243

Query: 99  MLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
           +LL   A V   N+ G TAL  A  K   +  ELL    A+  
Sbjct: 244 LLLKGRALVGTVNEAGETALDIARKKHHKECEELL--EQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 71.6 bits (175), Expect = 6e-15
 Identities = 25/111 (22%), Positives = 36/111 (32%), Gaps = 9/111 (8%)

Query: 119 HYAASKGWLKIVELLISRGAKINSKDKV------GCTALHRGASTGNSA---LCELLIEE 169
             A     L  V    + G                   LH      N A   L + +I+ 
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215

Query: 170 GAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRA 220
           G  +DA    G T L  A +    +   LL++  A V   ++ G T L  A
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 266

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 45.4 bits (107), Expect = 5e-06
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIV 97
           L  +  D  T LH AA    P+ +++LL     A  V  V+E G   +  A    +    
Sbjct: 219 LDAKAADGNTALHYAALYNQPDCLKLLLK--GRAL-VGTVNEAGETALDIARKKHHKECE 275

Query: 98  EML 100
           E+L
Sbjct: 276 ELL 278

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 71.9 bits (176), Expect = 9e-15
 Identities = 27/129 (20%), Positives = 52/129 (40%), Gaps = 5/129 (3%)

Query: 43  DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD--EEGWAPIHSAASI---GNVTIV 97
            + + L     +     V+E   +  +    +   D        +H A  +    ++ +V
Sbjct: 131 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLV 190

Query: 98  EMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST 157
           + ++  G  ++ K   G TALHYAA       ++LL+   A + + ++ G TAL      
Sbjct: 191 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK 250

Query: 158 GNSALCELL 166
            +    ELL
Sbjct: 251 HHKECEELL 259

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 67.2 bits (164), Expect = 3e-13
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 9/124 (7%)

Query: 85  IHSAASIGNVTIVEMLLSKGADVNLK------NDGGRTALHYA---ASKGWLKIVELLIS 135
           + +A    ++  V    + G D                 LH A   A++  L +V+ +I 
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195

Query: 136 RGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEV 195
            G  +++K   G TALH  A        +LL++  A V   ++AG+T L  A   ++KE 
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKEC 255

Query: 196 ALLL 199
             LL
Sbjct: 256 EELL 259

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 66.8 bits (163), Expect = 5e-13
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 9/114 (7%)

Query: 118 LHYAASKGWLKIVELLISRGAKINSK------DKVGCTALH---RGASTGNSALCELLIE 168
           L  A     L  V    + G                   LH   + A+  +  L + +I+
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195

Query: 169 EGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASN 222
            G  +DA    G T L  A +    +   LL++  A V   ++ G T L  A  
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 249

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	238
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	100.0
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	100.0
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	100.0
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	100.0
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	100.0
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	100.0
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.97
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.97
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.97
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.96
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.96
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.95
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.95
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.95
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.94
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.94
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.94
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.94
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.94
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.94
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.93
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.93
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.93
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.92
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.92
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.91
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.91
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.91
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.9
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.9
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.9
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.89
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.88
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.84
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.82

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.7e-47  Score=284.85  Aligned_cols=231  Identities=24%  Similarity=0.296  Sum_probs=184.5

Q ss_pred             CccchhhhccChHHHHHHHcC-------------ChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhh
Q 026440            1 MDMDIDQTIKDKDLFKAAETG-------------DSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSV   67 (238)
Q Consensus         1 ~~~~~~~~~~~~~l~~a~~~g-------------~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~   67 (238)
                      +|++..+..+.++||.|+..|             +.+++++|++.+. ......+..|.||||+|+..|+.+++++|++.
T Consensus         1 ~dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~-~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~   79 (253)
T 1yyh_A            1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGA-SLHNQTDRTGETALHLAARYSRSDAAKRLLEA   79 (253)
T ss_dssp             ----------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccC-CcccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence            578889999999999999988             9999999999883 33345588999999999999999999999998


Q ss_pred             cccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Q 026440           68 DESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA-DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV  146 (238)
Q Consensus        68 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~  146 (238)
                      |.+   ++..+..|.||||+|+..++.+++++|++.+. +++..+..|.|||++|+..|+.+++++|++.|++++..+..
T Consensus        80 g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~  156 (253)
T 1yyh_A           80 SAD---ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL  156 (253)
T ss_dssp             TCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTT
T ss_pred             CCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCC
Confidence            877   66778899999999999999999999999987 88888999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccch
Q 026440          147 GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRP  226 (238)
Q Consensus       147 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~  226 (238)
                      |.||||+|+..++.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|...++.
T Consensus       157 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~  236 (253)
T 1yyh_A          157 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH  236 (253)
T ss_dssp             SCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 026440          227 ILIDAAKAM  235 (238)
Q Consensus       227 ~~~~~~~~~  235 (238)
                      +++++++..
T Consensus       237 ~i~~~l~~~  245 (253)
T 1yyh_A          237 DIVRLLDLE  245 (253)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHHH
Confidence            999998754

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2e-46  Score=276.44  Aligned_cols=231  Identities=30%  Similarity=0.427  Sum_probs=215.2

Q ss_pred             CccchhhhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCC
Q 026440            1 MDMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE   80 (238)
Q Consensus         1 ~~~~~~~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~   80 (238)
                      +|++..+..+.++||.|+..|+.+++++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+..   ++..+..
T Consensus         2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~   76 (237)
T 3b7b_A            2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAG--ANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL---VDPKDAE   76 (237)
T ss_dssp             CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC---CCCCCTT
T ss_pred             CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcC--CCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC---CCCCCCC
Confidence            477888999999999999999999999999986  46778889999999999999999999999998776   6667889


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCC
Q 026440           81 GWAPIHSAASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN  159 (238)
Q Consensus        81 ~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~  159 (238)
                      |.|||++|+..++.+++++|++.+ .+++..+..|.|||++|+..++.+++++|+++|++++..+..|.||||.|+..++
T Consensus        77 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  156 (237)
T 3b7b_A           77 GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGC  156 (237)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCC
Confidence            999999999999999999999998 7888889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHH-HHHHHHh
Q 026440          160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILI-DAAKAML  236 (238)
Q Consensus       160 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~-~~~~~~~  236 (238)
                      .+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|+.+++...+ ++++.+.
T Consensus       157 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~  234 (237)
T 3b7b_A          157 VDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ  234 (237)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999997544 4444443

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=6e-46  Score=272.85  Aligned_cols=223  Identities=37%  Similarity=0.484  Sum_probs=211.9

Q ss_pred             hccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHH
Q 026440            8 TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS   87 (238)
Q Consensus         8 ~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~   87 (238)
                      ..++++|+.|+..|+.+.++++++.+ +...+..+..|.||||+|+..|+.+++++|++.+.+   ++..+..|+||||+
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~   79 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHI   79 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTSCCHHHH
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHhc-hhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC---CCCcCCCCCCHHHH
Confidence            45778999999999999999999987 455778899999999999999999999999998876   66778899999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHH
Q 026440           88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLI  167 (238)
Q Consensus        88 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll  167 (238)
                      |+..++.+++++|+++|++++.++..|.|||++|+..++.+++++|++.|++++..+..|.||||.|+..++.+++++|+
T Consensus        80 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  159 (231)
T 3aji_A           80 AASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL  159 (231)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHHH
Q 026440          168 EEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKA  234 (238)
Q Consensus       168 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~  234 (238)
                      ++|++++.++..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|...++.++.++|+.
T Consensus       160 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~  226 (231)
T 3aji_A          160 FYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEG  226 (231)
T ss_dssp             HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHH
T ss_pred             hcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcc
Confidence            9999999999999999999999999999999999999999999999999999999999999888875

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.1e-45  Score=272.99  Aligned_cols=227  Identities=27%  Similarity=0.300  Sum_probs=207.2

Q ss_pred             chhhhccChHHHHHHHcCChHHHHHHHHHH--hhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCC
Q 026440            4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQ--LLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (238)
Q Consensus         4 ~~~~~~~~~~l~~a~~~g~~~~v~~l~~~~--~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~   81 (238)
                      +..+..+.++||+|+..|+.+++++|++..  .+.+++..+..|.||||+|+..|+.+++++|++.+.+   ++..+..|
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g   79 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS---PMALDRHG   79 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTS
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCC
Confidence            346778899999999999999999999842  2456788899999999999999999999999998877   56678899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCC----CCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHh
Q 026440           82 WAPIHSAASIGNVTIVEMLLSKGA----DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD-KVGCTALHRGAS  156 (238)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~Ll~~~~----~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~t~l~~a~~  156 (238)
                      .||||+|+..++.+++++|++.+.    +++..+..|.|||++|+..|+.+++++|++.|++++..+ ..|.||||+|+.
T Consensus        80 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~  159 (241)
T 1k1a_A           80 QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE  159 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Confidence            999999999999999999999987    778888899999999999999999999999999999988 789999999999


Q ss_pred             hCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHH
Q 026440          157 TGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAK  233 (238)
Q Consensus       157 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~  233 (238)
                      .++.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|+..++.++++.+.
T Consensus       160 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~  236 (241)
T 1k1a_A          160 NNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKA  236 (241)
T ss_dssp             TTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC--
T ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999977776554

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.1e-44  Score=265.56  Aligned_cols=220  Identities=32%  Similarity=0.461  Sum_probs=202.0

Q ss_pred             cChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHH
Q 026440           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAA   89 (238)
Q Consensus        10 ~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~   89 (238)
                      ++++||.|+..|+.+++++|++.+ .......+..|.||||+|+..|+.+++++|++.+.........+..|.||||+|+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~   80 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   80 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHC-GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcC-ccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence            578999999999999999999988 4455568899999999999999999999999988655533337889999999999


Q ss_pred             HcCCHHHHHHHHHcC--CCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHH
Q 026440           90 SIGNVTIVEMLLSKG--ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLI  167 (238)
Q Consensus        90 ~~~~~~~~~~Ll~~~--~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll  167 (238)
                      ..++.+++++|++.|  .+++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|+
T Consensus        81 ~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  160 (228)
T 2dzn_A           81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC  160 (228)
T ss_dssp             HHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999999999998  888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcC-CCCCccccCCCcHHHHHHHhCCHHHHHHHH-hcCCCCccCCCCCCchhhccccccchHHHHHHH
Q 026440          168 EEG-AEVDATDKAGQTPLMNAVICYNKEVALLLI-RHGADVDVEDKEGYTVLGRASNDFRPILIDAAK  233 (238)
Q Consensus       168 ~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll-~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~  233 (238)
                      +.| ++++.++..|.||||+|+..++.+++++|+ ++|++++.+|..|.||+++|.+.+.   .++++
T Consensus       161 ~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~~~---~~~l~  225 (228)
T 2dzn_A          161 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQV---KKFFL  225 (228)
T ss_dssp             TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSSTTH---HHHHH
T ss_pred             hcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHHHH---HHHHH
Confidence            999 999999999999999999999999999999 8999999999999999999987643   44443

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=9.7e-45  Score=273.85  Aligned_cols=220  Identities=27%  Similarity=0.296  Sum_probs=189.0

Q ss_pred             chhhhccChHHHHHHHcCChHHHHHHHHHHhhh-hcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCC
Q 026440            4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLK-SLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (238)
Q Consensus         4 ~~~~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~-~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~   82 (238)
                      ...+..+.++||+|+..|+.++|++|++.+... .++..+..|.||||+|+..|+.+++++|++.|.+   ++..+..|+
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~g~   79 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG---VLVAERGGH   79 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---SSCCCTTSC
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCC
Confidence            456788999999999999999999999987421 2778889999999999999999999999998887   667788999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCC-----------------------------------------------CcccCCCCc
Q 026440           83 APIHSAASIGNVTIVEMLLSKGAD-----------------------------------------------VNLKNDGGR  115 (238)
Q Consensus        83 t~l~~a~~~~~~~~~~~Ll~~~~~-----------------------------------------------~~~~~~~~~  115 (238)
                      ||||+|+..++.+++++|++.+..                                               ++..+..|.
T Consensus        80 tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  159 (282)
T 1oy3_D           80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH  159 (282)
T ss_dssp             CHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSC
T ss_pred             CHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCc
Confidence            999999999999999999998754                                               455677899


Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-CCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHH
Q 026440          116 TALHYAASKGWLKIVELLISRGAKINSKDKV-GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE  194 (238)
Q Consensus       116 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~-~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  194 (238)
                      ||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..++.+++++|+++|++++.++..|.||||+|+..++.+
T Consensus       160 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~  239 (282)
T 1oy3_D          160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPI  239 (282)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcH
Confidence            9999999999999999999999999998865 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCccCCCCCCchhhccccccch
Q 026440          195 VALLLIRHGADVDVEDKEGYTVLGRASNDFRP  226 (238)
Q Consensus       195 ~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~  226 (238)
                      ++++|+++|++++.+|..|.||+++|......
T Consensus       240 ~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~~  271 (282)
T 1oy3_D          240 LARLLRAHGAPEPEDGGDKLSPCSSSGSDSDS  271 (282)
T ss_dssp             HHHHHHHTTCCCCCCC----------------
T ss_pred             HHHHHHHcCCCcCcCCCcccccccccCCcccc
Confidence            99999999999999999999999999876543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.8e-45  Score=275.54  Aligned_cols=221  Identities=27%  Similarity=0.393  Sum_probs=176.2

Q ss_pred             ccChHHHHHHHcCChHHHHHHHHHHhh------hhcCCCCCCCchHHHHHHHcCCH-HHHHHHHhhcccccccccccCCC
Q 026440            9 IKDKDLFKAAETGDSSTFKSLSKQQLL------KSLSLRNDDDRTLLHVAASCGHP-EVVEILLSVDESANVVNAVDEEG   81 (238)
Q Consensus         9 ~~~~~l~~a~~~g~~~~v~~l~~~~~~------~~~~~~~~~~~t~L~~A~~~~~~-~~~~~Ll~~~~~~~~~~~~~~~~   81 (238)
                      .+.++|+.|+.+|+.++|++|++.+..      ..++..+..+.|||+.|+..++. .++++|+..|.+   ++..+..|
T Consensus        10 ~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gad---vn~~d~~G   86 (269)
T 4b93_B           10 REVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLG---VNVTSQDG   86 (269)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCC---TTCCCTTS
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCC---CCCcCCCC
Confidence            345689999999999999999976521      23456677899999999988776 478999988877   67788999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHH
Q 026440           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA  161 (238)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~  161 (238)
                      +||||+|+..|+.+++++|++.|++++..+..|.||++.|+..++.+++++|++.|++++..|..|.||||+|+..|+.+
T Consensus        87 ~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~  166 (269)
T 4b93_B           87 SSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHE  166 (269)
T ss_dssp             CCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGG
T ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHHH
Q 026440          162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKA  234 (238)
Q Consensus       162 ~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~  234 (238)
                      ++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|.+|+|||++|+++++  ++++++.
T Consensus       167 ~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~--i~~lL~~  237 (269)
T 4b93_B          167 LVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK--IMELLQV  237 (269)
T ss_dssp             GHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH--HHHHTTC
T ss_pred             HHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc--HHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999998775  4554443

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.1e-43  Score=268.48  Aligned_cols=220  Identities=27%  Similarity=0.344  Sum_probs=202.6

Q ss_pred             hhhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHH
Q 026440            6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI   85 (238)
Q Consensus         6 ~~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l   85 (238)
                      .+..+.++||+|+..|+.+++++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+.+   ++..+..|.|||
T Consensus        55 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~g~t~L  129 (285)
T 3d9h_A           55 DAVSDWSPMHEAAIHGHQLSLRNLISQG--WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ---VNGVTADWHTPL  129 (285)
T ss_dssp             SSCCSCCHHHHHHHTTCHHHHHHHHHTT--CCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCC---SSCCCTTCCCHH
T ss_pred             CCccCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC---CCCCCCCCCCHH
Confidence            4556778999999999999999999986  56888899999999999999999999999998877   677788999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHH
Q 026440           86 HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL  165 (238)
Q Consensus        86 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  165 (238)
                      ++|+..++.+++++|++.|++++..+ .|.|||++|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++
T Consensus       130 ~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~  208 (285)
T 3d9h_A          130 FNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKK  208 (285)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence            99999999999999999999987544 59999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHHH
Q 026440          166 LIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKA  234 (238)
Q Consensus       166 Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~  234 (238)
                      |++.|++++. +..|.||||+|+..++.+++++|+++|++++.+|..|+||+++|+.+  .+++++|..
T Consensus       209 Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~--~~~~~~Ll~  274 (285)
T 3d9h_A          209 LLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPE--SPLAQLFLE  274 (285)
T ss_dssp             HHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTT--SHHHHHHHH
T ss_pred             HHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcCc--cHHHHHHHH
Confidence            9999999994 88899999999999999999999999999999999999999999954  456655543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.9e-44  Score=280.69  Aligned_cols=225  Identities=25%  Similarity=0.316  Sum_probs=208.0

Q ss_pred             cchhhhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCC
Q 026440            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (238)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~   82 (238)
                      .+..+..+.++||+|+..|+.++|++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+...     .+..|.
T Consensus        13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----~~~~g~   85 (364)
T 3ljn_A           13 RIKSDDENMEKIHVAARKGQTDEVRRLIETG--VSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH-----SLWHGQ   85 (364)
T ss_dssp             ---CCHHHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC-----CCBTTB
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc-----cccCCC
Confidence            3455677889999999999999999999886  578888999999999999999999999999988742     235899


Q ss_pred             cHHHHHHHcCCHHHHHHHHHc----CCCCcc-----------------cCCCCchHHHHHHHcC--CHHHHHHHHHcCCC
Q 026440           83 APIHSAASIGNVTIVEMLLSK----GADVNL-----------------KNDGGRTALHYAASKG--WLKIVELLISRGAK  139 (238)
Q Consensus        83 t~l~~a~~~~~~~~~~~Ll~~----~~~~~~-----------------~~~~~~~~l~~a~~~~--~~~~~~~l~~~~~~  139 (238)
                      ||||+|+..|+.+++++|++.    |.+++.                 .+..|.||||+|+..|  +.+++++|++.|++
T Consensus        86 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~  165 (364)
T 3ljn_A           86 KPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS  165 (364)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC
T ss_pred             CHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC
Confidence            999999999999999999998    777776                 7788999999999999  99999999999999


Q ss_pred             CCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCC-----CCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCC
Q 026440          140 INSKDKVGCTALHRGASTGNSALCELLIEEGAE-----VDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGY  214 (238)
Q Consensus       140 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~-----~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~  214 (238)
                      ++..+..|.||||+|+..|+.+++++|+++|++     ++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.
T Consensus       166 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~  245 (364)
T 3ljn_A          166 PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHT  245 (364)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSC
T ss_pred             CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Confidence            999999999999999999999999999999988     999999999999999999999999999999999999999999


Q ss_pred             chhhccccccchHHHHHHHH
Q 026440          215 TVLGRASNDFRPILIDAAKA  234 (238)
Q Consensus       215 tpl~~a~~~~~~~~~~~~~~  234 (238)
                      |||++|+..++.+++++|..
T Consensus       246 tpL~~A~~~g~~~~v~~Ll~  265 (364)
T 3ljn_A          246 VPLYLSVRAAMVLLTKELLQ  265 (364)
T ss_dssp             CHHHHHHHTCCHHHHHHHHH
T ss_pred             CHHHHHHHhChHHHHHHHHH
Confidence            99999999999888888765

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=5.7e-43  Score=264.32  Aligned_cols=223  Identities=27%  Similarity=0.379  Sum_probs=194.4

Q ss_pred             hhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHH
Q 026440            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH   86 (238)
Q Consensus         7 ~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~   86 (238)
                      +..+.++||+|+..|+.+++++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+.+   ++..+..|.|||+
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~  110 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRHG--ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD---VNECDFYGFTAFM  110 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---TTCBCTTCCBHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCcccCCHHH
Confidence            455677899999999999999998876  45677788889999999999999999999987766   5666788899999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCccc----------CCCCchHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHH
Q 026440           87 SAASIGNVTIVEMLLSKGADVNLK----------NDGGRTALHYAASKGWLKIVELLISR-GAKINSKDKVGCTALHRGA  155 (238)
Q Consensus        87 ~a~~~~~~~~~~~Ll~~~~~~~~~----------~~~~~~~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~~t~l~~a~  155 (238)
                      +|+..++.+++++|++.|++++..          +..|.|||+.|+..|+.+++++|++. |.+++..+..|.||+|.|+
T Consensus       111 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~  190 (285)
T 1wdy_A          111 EAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHAL  190 (285)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence            999999999999999998888766          66788999999999999999999987 8889888888999999999


Q ss_pred             hhCC----HHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHh-cCCCCccCCCCCCchhhccccccchHHHH
Q 026440          156 STGN----SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIR-HGADVDVEDKEGYTVLGRASNDFRPILID  230 (238)
Q Consensus       156 ~~~~----~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~g~tpl~~a~~~~~~~~~~  230 (238)
                      ..++    .+++++|+++|++++.++..|.||||+|+..++.+++++|++ .|++++.+|..|.||+++|+..++.++++
T Consensus       191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~  270 (285)
T 1wdy_A          191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE  270 (285)
T ss_dssp             HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHH
Confidence            9888    889999999999999999999999999999999999999998 79999999999999999999999988887


Q ss_pred             HHHH
Q 026440          231 AAKA  234 (238)
Q Consensus       231 ~~~~  234 (238)
                      +|..
T Consensus       271 ~Ll~  274 (285)
T 1wdy_A          271 LLCK  274 (285)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7754

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=6e-43  Score=258.00  Aligned_cols=228  Identities=26%  Similarity=0.318  Sum_probs=210.3

Q ss_pred             chhhhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCc
Q 026440            4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWA   83 (238)
Q Consensus         4 ~~~~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t   83 (238)
                      +..+..+.++|+.|+..|+.+++++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+....  ...+..|.|
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~--~~~~~~~~t   78 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAG--YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVD--QLGGDLNST   78 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCBTTTTBC
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcC--CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcch--hhcCCcCCC
Confidence            445677888999999999999999999987  5677888999999999999999999999999876632  233456999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCC-HHH
Q 026440           84 PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN-SAL  162 (238)
Q Consensus        84 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~-~~~  162 (238)
                      ||++|+..++.+++++|++.|++++..+..|.|||++|+..|+.+++++|+++|++++..+..|.||+|.|+..+. .++
T Consensus        79 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  158 (240)
T 3eu9_A           79 PLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDP  158 (240)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTT
T ss_pred             hhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999997776 899


Q ss_pred             HHHHHhcCCCCCcccc-CCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHHHH
Q 026440          163 CELLIEEGAEVDATDK-AGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKAM  235 (238)
Q Consensus       163 ~~~Ll~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~  235 (238)
                      +++|++.|++++..+. .|.||||+|+..++.+++++|+++|++++.+|..|.||+++|+..++.+++++|.+-
T Consensus       159 ~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~  232 (240)
T 3eu9_A          159 TRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA  232 (240)
T ss_dssp             HHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence            9999999999999887 899999999999999999999999999999999999999999999999999888753

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.8e-43  Score=280.06  Aligned_cols=225  Identities=30%  Similarity=0.368  Sum_probs=183.3

Q ss_pred             hhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHH
Q 026440            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH   86 (238)
Q Consensus         7 ~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~   86 (238)
                      +..+.++|+.|+..|+.+++++|++.+  .+.+..+..|.||||+|+..|+.+++++|++.+..   .+..+..|.|||+
T Consensus       176 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~  250 (437)
T 1n11_A          176 GKNGLTPLHVAVHHNNLDIVKLLLPRG--GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS---ANAESVQGVTPLH  250 (437)
T ss_dssp             CSSCCCHHHHHHHTTCHHHHHHHGGGT--CCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHH
Confidence            344555666666666666666666554  23445555666677777777777777777766555   4556677888888


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHH
Q 026440           87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL  166 (238)
Q Consensus        87 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  166 (238)
                      +|+..|+.+++++|++.+++++..+..|.|||++|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|
T Consensus       251 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  330 (437)
T 1n11_A          251 LAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFL  330 (437)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHH
T ss_pred             HHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHH
Confidence            88888888888888888888888888888899999988999999999999998888888899999999999999999999


Q ss_pred             HhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHHHHh
Q 026440          167 IEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKAML  236 (238)
Q Consensus       167 l~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~  236 (238)
                      +++|++++.++..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|.+.++.+++++++.+.
T Consensus       331 l~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~  400 (437)
T 1n11_A          331 LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVT  400 (437)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred             HhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999888654

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=3.7e-43  Score=272.86  Aligned_cols=222  Identities=31%  Similarity=0.374  Sum_probs=122.7

Q ss_pred             hhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHH
Q 026440            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH   86 (238)
Q Consensus         7 ~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~   86 (238)
                      +..+.+.|+.|+..|+.+.+++++... +.+++..+..|.||||+|+..|+.+++++|++.|.+   ++..+..|.||||
T Consensus        21 ~~~~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~   96 (351)
T 3utm_A           21 GEYKKDELLEAARSGNEEKLMALLTPL-NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD---VHAKDKGGLVPLH   96 (351)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHCCTT-TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHH
T ss_pred             ccccchhHHHHHHcCCHHHHHHHHHhc-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCcHHH
Confidence            444555566666666666666555543 334455555566666666666666666666655544   4444555566666


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC----------------------
Q 026440           87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD----------------------  144 (238)
Q Consensus        87 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~----------------------  144 (238)
                      +|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|+++|++++..+                      
T Consensus        97 ~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~  176 (351)
T 3utm_A           97 NACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYE  176 (351)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhh
Confidence            6666666666666666665555555555666666666666666666655555544322                      


Q ss_pred             --------------------------------CCCCcHHHHHHhh---CCHHHHHHHHhcCCCCCccccCCCcHHHHHHH
Q 026440          145 --------------------------------KVGCTALHRGAST---GNSALCELLIEEGAEVDATDKAGQTPLMNAVI  189 (238)
Q Consensus       145 --------------------------------~~~~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~  189 (238)
                                                      ..+.||+|.|+..   +..+++++|++.|++++.++..|.||||+|+.
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~  256 (351)
T 3utm_A          177 FKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAE  256 (351)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             hcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHH
Confidence                                            2234555555554   33455555555555555555555555555555


Q ss_pred             hCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHH
Q 026440          190 CYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAA  232 (238)
Q Consensus       190 ~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~  232 (238)
                      .++.+++++|+++|++++.+|..|+||||+|+..++.+++++|
T Consensus       257 ~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~L  299 (351)
T 3utm_A          257 RAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLL  299 (351)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence            5555555555555555555555555555555555554444443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.5e-43  Score=277.24  Aligned_cols=229  Identities=23%  Similarity=0.278  Sum_probs=209.1

Q ss_pred             cchhh-hccChHHHHHHHcCChHHHHHHHHH------HhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccc
Q 026440            3 MDIDQ-TIKDKDLFKAAETGDSSTFKSLSKQ------QLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVN   75 (238)
Q Consensus         3 ~~~~~-~~~~~~l~~a~~~g~~~~v~~l~~~------~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~   75 (238)
                      ++..+ ..+.++||+|+..|+.+++++|+..      ..+.+++..+..|.||||+|+..|+.+++++|++.|.+   ++
T Consensus       117 ~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~---~~  193 (373)
T 2fo1_E          117 VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD---PT  193 (373)
T ss_dssp             TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---SC
T ss_pred             ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCC---Cc
Confidence            34444 5788999999999999999999853      12457888899999999999999999999999998887   56


Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHHcC---CCCcccCCCCchHHHHHHHcC---CHHHHHHHHHcCCCCCC-------
Q 026440           76 AVDEEGWAPIHSAASIGNVTIVEMLLSKG---ADVNLKNDGGRTALHYAASKG---WLKIVELLISRGAKINS-------  142 (238)
Q Consensus        76 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~---~~~~~~~~~~~~~l~~a~~~~---~~~~~~~l~~~~~~~~~-------  142 (238)
                      ..+..|.||||+|+..|+.+++++|++.+   .+++..+..|.|||++|+..+   +.+++++|++.|++++.       
T Consensus       194 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~  273 (373)
T 2fo1_E          194 IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD  273 (373)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTS
T ss_pred             ccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccC
Confidence            67889999999999999999999999987   788888999999999999988   89999999999999886       


Q ss_pred             -CCCCCCcHHHHHHhhCCHHHHHHHHhcC-CCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhcc
Q 026440          143 -KDKVGCTALHRGASTGNSALCELLIEEG-AEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRA  220 (238)
Q Consensus       143 -~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a  220 (238)
                       .+..|.||||+|+..|+.+++++|++++ ++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|
T Consensus       274 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A  353 (373)
T 2fo1_E          274 SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLA  353 (373)
T ss_dssp             SSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHH
T ss_pred             cccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHH
Confidence             5668999999999999999999999885 99999999999999999999999999999999999999999999999999


Q ss_pred             ccccchHHHHHHHH
Q 026440          221 SNDFRPILIDAAKA  234 (238)
Q Consensus       221 ~~~~~~~~~~~~~~  234 (238)
                      +..++.+++++|..
T Consensus       354 ~~~g~~~iv~~Ll~  367 (373)
T 2fo1_E          354 QANNHHNIVDIFDR  367 (373)
T ss_dssp             HHTTCHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHh
Confidence            99999888888754

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=3.8e-42  Score=267.12  Aligned_cols=224  Identities=30%  Similarity=0.397  Sum_probs=203.5

Q ss_pred             ccchhhhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCC
Q 026440            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (238)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~   81 (238)
                      +++..+..+.++||+|+..|+.+++++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+.+   ++..+..|
T Consensus        50 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~---~~~~~~~g  124 (351)
T 3utm_A           50 NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG--ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC---VNAMDLWQ  124 (351)
T ss_dssp             TCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTC
T ss_pred             CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCC---CCCCCCCC
Confidence            34456677889999999999999999999986  57888899999999999999999999999998877   66778899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCcccC--------------------------------------------------
Q 026440           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKN--------------------------------------------------  111 (238)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~--------------------------------------------------  111 (238)
                      .||||+|+..++.+++++|+++|++++..+                                                  
T Consensus       125 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  204 (351)
T 3utm_A          125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIIN  204 (351)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhccc
Confidence            999999999999999999999998876543                                                  


Q ss_pred             ----CCCchHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHH
Q 026440          112 ----DGGRTALHYAASK---GWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL  184 (238)
Q Consensus       112 ----~~~~~~l~~a~~~---~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l  184 (238)
                          ..|.||||+|+..   +..+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.|||
T Consensus       205 ~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L  284 (351)
T 3utm_A          205 FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTAL  284 (351)
T ss_dssp             CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence                4567999999998   558999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHHH
Q 026440          185 MNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKA  234 (238)
Q Consensus       185 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~  234 (238)
                      |+|+..++.+++++|+++|++++.+|..|.||+++|..    ++.+++.+
T Consensus       285 ~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a~~----~~~~~l~~  330 (351)
T 3utm_A          285 HRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNE----AVQQILSE  330 (351)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHSCH----HHHHHHHH
T ss_pred             HHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhhhH----HHHHHHHh
Confidence            99999999999999999999999999999999999943    45555544

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=5.8e-42  Score=258.80  Aligned_cols=221  Identities=31%  Similarity=0.425  Sum_probs=205.8

Q ss_pred             ccChHHHHHHHcCChHHHHHHHHHHhhhhcCCC-CCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHH
Q 026440            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLR-NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS   87 (238)
Q Consensus         9 ~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~-~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~   87 (238)
                      .+.+.|+.|+..|+.+++++|++.+  .+++.. +..|.||||+|+..|+.+++++|++.+.+   ++..+..|.||||+
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~   78 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGG--ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD---PVLRKKNGATPFLL   78 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcC--CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CcccCCCCCCHHHH
Confidence            4567899999999999999999987  355555 77899999999999999999999998877   56678899999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC----------CCCCCcHHHHHHhh
Q 026440           88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK----------DKVGCTALHRGAST  157 (238)
Q Consensus        88 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~----------~~~~~t~l~~a~~~  157 (238)
                      |+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|++.|++++..          +..|.||||.|+..
T Consensus        79 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~  158 (285)
T 1wdy_A           79 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK  158 (285)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999876          67799999999999


Q ss_pred             CCHHHHHHHHhc-CCCCCccccCCCcHHHHHHHhCC----HHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHH
Q 026440          158 GNSALCELLIEE-GAEVDATDKAGQTPLMNAVICYN----KEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAA  232 (238)
Q Consensus       158 ~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~  232 (238)
                      ++.+++++|++. |++++..+..|.||||+|+..++    .+++++|+++|++++.+|..|.||||+|+..++.+++++|
T Consensus       159 ~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  238 (285)
T 1wdy_A          159 GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL  238 (285)
T ss_dssp             TCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence            999999999998 99999999999999999999999    9999999999999999999999999999999998887776


Q ss_pred             HH
Q 026440          233 KA  234 (238)
Q Consensus       233 ~~  234 (238)
                      ..
T Consensus       239 l~  240 (285)
T 1wdy_A          239 LE  240 (285)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=5.1e-43  Score=255.89  Aligned_cols=211  Identities=24%  Similarity=0.301  Sum_probs=186.9

Q ss_pred             cCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHH
Q 026440           20 TGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM   99 (238)
Q Consensus        20 ~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~   99 (238)
                      .|+.+++++|++.+. ......+..|.||||+|+..|+.+++++|++.+.+   ++..+..|.||||+|+..++.+++++
T Consensus         1 gg~~~~i~~Ll~~g~-~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~   76 (223)
T 2f8y_A            1 GDAPAVISDFIYQGA-SLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD---ANIQDNMGRTPLHAAVSADAQGVFQI   76 (223)
T ss_dssp             ----CCEETTEETTC-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             CCcHHHHHHHHHcCC-CcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            367888888888762 22234478899999999999999999999988776   56678899999999999999999999


Q ss_pred             HHHcCC-CCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCcccc
Q 026440          100 LLSKGA-DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDK  178 (238)
Q Consensus       100 Ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  178 (238)
                      |++.+. +++..+..|.|||++|+..++.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++.++.
T Consensus        77 Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  156 (223)
T 2f8y_A           77 LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN  156 (223)
T ss_dssp             HHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            999886 7788888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHHH
Q 026440          179 AGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKA  234 (238)
Q Consensus       179 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~  234 (238)
                      .|.||||+|+..++.+++++|+++|++++.+|..|.||+++|+..++.+++++|..
T Consensus       157 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~  212 (223)
T 2f8y_A          157 REETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE  212 (223)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999888888764

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-42  Score=264.44  Aligned_cols=220  Identities=30%  Similarity=0.428  Sum_probs=197.1

Q ss_pred             ccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHH
Q 026440            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA   88 (238)
Q Consensus         9 ~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a   88 (238)
                      .+.+.|+.|+..|+.++|++|++.+  .+++..+..|.||||+|+..|+.+++++|++.|.+   ++..+..|.||||+|
T Consensus        39 ~~~t~l~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~g~tpL~~A  113 (299)
T 1s70_B           39 DDGAVFLAACSSGDTEEVLRLLERG--ADINYANVDGLTALHQACIDDNVDMVKFLVENGAN---INQPDNEGWIPLHAA  113 (299)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHC--CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHcC--CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCcHHHHH
Confidence            3457899999999999999999987  56788899999999999999999999999998877   677788999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHc-CCCCC--------------------------
Q 026440           89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR-GAKIN--------------------------  141 (238)
Q Consensus        89 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~-~~~~~--------------------------  141 (238)
                      +..|+.+++++|+++|++++..+..|.|||++|+..++.+++++++.. +.+++                          
T Consensus       114 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  193 (299)
T 1s70_B          114 ASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDV  193 (299)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             HHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchh
Confidence            999999999999999999999999999999999999998988877653 33322                          


Q ss_pred             CCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccc
Q 026440          142 SKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS  221 (238)
Q Consensus       142 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~  221 (238)
                      ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|.
T Consensus       194 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~  273 (299)
T 1s70_B          194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD  273 (299)
T ss_dssp             CCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCC
T ss_pred             hhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            24567999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cccchHHHHHHH
Q 026440          222 NDFRPILIDAAK  233 (238)
Q Consensus       222 ~~~~~~~~~~~~  233 (238)
                      +.....+.++++
T Consensus       274 ~~~~~~l~~l~~  285 (299)
T 1s70_B          274 EDILGYLEELQK  285 (299)
T ss_dssp             SGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            765444444433

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.5e-42  Score=260.26  Aligned_cols=223  Identities=23%  Similarity=0.239  Sum_probs=181.7

Q ss_pred             hhccChHHHHHHHcCChHHHHHHHHHHh---------hhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccc
Q 026440            7 QTIKDKDLFKAAETGDSSTFKSLSKQQL---------LKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAV   77 (238)
Q Consensus         7 ~~~~~~~l~~a~~~g~~~~v~~l~~~~~---------~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~   77 (238)
                      ...+.+.+|+|+..|+.+.+..++....         ...++..+..|+||||+|+..|+.+++++|++.+.+   ++..
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~---~~~~   88 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA---VNII   88 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC---SCEE
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCc
Confidence            4567788999999999988888776642         234567788999999999999999999999998776   6778


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhh
Q 026440           78 DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST  157 (238)
Q Consensus        78 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~  157 (238)
                      +..|.||||+|+..|+.+++++|++.|++++..+..|.|||++|+..|+.+++++|++.|++++.. ..|.||||+|+..
T Consensus        89 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~  167 (285)
T 3d9h_A           89 TADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE-SDLASPIHEAARR  167 (285)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCS-CTTSCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHc
Confidence            889999999999999999999999999999999999999999999999999999999999998864 4599999999999


Q ss_pred             CCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHHH
Q 026440          158 GNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKA  234 (238)
Q Consensus       158 ~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~  234 (238)
                      |+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++. +..|.||||+|+..++.+++++|..
T Consensus       168 g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~  243 (285)
T 3d9h_A          168 GHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMD  243 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999995 8899999999999999888887754

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=7.1e-42  Score=273.27  Aligned_cols=225  Identities=32%  Similarity=0.387  Sum_probs=149.4

Q ss_pred             cchhhhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCC
Q 026440            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (238)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~   82 (238)
                      ++..+..+.++||.|+..|+.++|++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+.+   ++..+..|+
T Consensus         7 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~   81 (437)
T 1n11_A            7 GGGGGESGLTPLHVASFMGHLPIVKNLLQRG--ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK---VNAKAKDDQ   81 (437)
T ss_dssp             --------CCHHHHHHHHTCHHHHHHHHHTT--CCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC---SSCCCTTSC
T ss_pred             ccccCCCCCCHHHHHHHCCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---CCCCCCCCC
Confidence            3445566677777777777777777777665  35566666777777777777777777777776655   555666777


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHH
Q 026440           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL  162 (238)
Q Consensus        83 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  162 (238)
                      ||||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|++.+.+.+..+..|.||||.|+..|+.++
T Consensus        82 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~  161 (437)
T 1n11_A           82 TPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRV  161 (437)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred             CHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHH
Confidence            77777777777777777777777777666667777777777777777777777666666666666666666666666666


Q ss_pred             HHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHH
Q 026440          163 CELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAA  232 (238)
Q Consensus       163 ~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~  232 (238)
                      +++|+++|++++..+..|.||||+|+..++.+++++|+++|++++..+.+|.|||++|+..++.++++++
T Consensus       162 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  231 (437)
T 1n11_A          162 AELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL  231 (437)
T ss_dssp             HHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            6666666666666666666666666666666666666666666666666666666666666665555544

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.9e-41  Score=255.86  Aligned_cols=197  Identities=28%  Similarity=0.391  Sum_probs=184.5

Q ss_pred             cCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchH
Q 026440           38 LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTA  117 (238)
Q Consensus        38 ~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  117 (238)
                      ++.++..|+||||+|+..|+.+++++|++.+..+..++..+..|+||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp   81 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA   81 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            45678999999999999999999999999988876678889999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCC-----------------------------------------------CCCCCCCCCcH
Q 026440          118 LHYAASKGWLKIVELLISRGAK-----------------------------------------------INSKDKVGCTA  150 (238)
Q Consensus       118 l~~a~~~~~~~~~~~l~~~~~~-----------------------------------------------~~~~~~~~~t~  150 (238)
                      ||+|+..|+.+++++|++.+++                                               ++..+..|.||
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  161 (282)
T 1oy3_D           82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (282)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCH
Confidence            9999999999999999998755                                               56677889999


Q ss_pred             HHHHHhhCCHHHHHHHHhcCCCCCccccC-CCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHH
Q 026440          151 LHRGASTGNSALCELLIEEGAEVDATDKA-GQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILI  229 (238)
Q Consensus       151 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~  229 (238)
                      ||+|+..|+.+++++|+++|++++..+.. |.||||+|+..++.+++++|+++|++++.+|..|.|||++|+..++.+++
T Consensus       162 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v  241 (282)
T 1oy3_D          162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILA  241 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHH
Confidence            99999999999999999999999998854 99999999999999999999999999999999999999999999998888


Q ss_pred             HHHHH
Q 026440          230 DAAKA  234 (238)
Q Consensus       230 ~~~~~  234 (238)
                      ++|..
T Consensus       242 ~~Ll~  246 (282)
T 1oy3_D          242 RLLRA  246 (282)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87753

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=8.2e-41  Score=258.65  Aligned_cols=222  Identities=28%  Similarity=0.411  Sum_probs=190.2

Q ss_pred             cChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCC-CCchHHHHHHHcCCHHHHHHHHhhcccccc---------------
Q 026440           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRND-DDRTLLHVAASCGHPEVVEILLSVDESANV---------------   73 (238)
Q Consensus        10 ~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~-~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~---------------   73 (238)
                      +++.|+.|+++|++++|+.|++.+  .+++.++. .|+||||+|+..|+.+++++|+++|..+..               
T Consensus        25 ~~t~L~~Av~~g~~~~V~~LL~~G--advn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~  102 (337)
T 4g8k_A           25 DNHLLIKAVQNEDVDLVQQLLEGG--ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIA  102 (337)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHT--CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHCC--CCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhc
Confidence            466899999999999999999987  56776665 589999999999999999999998776432               


Q ss_pred             ---------------cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc----------CCCCchHHHHHHHcCCHH
Q 026440           74 ---------------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK----------NDGGRTALHYAASKGWLK  128 (238)
Q Consensus        74 ---------------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~----------~~~~~~~l~~a~~~~~~~  128 (238)
                                     ++..+..|.||+++|+..++.++++++++.|++++..          +..|.||||+|+..|+.+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~  182 (337)
T 4g8k_A          103 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  182 (337)
T ss_dssp             TCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHH
T ss_pred             ccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHH
Confidence                           4556778999999999999999999999999877643          345889999999999999


Q ss_pred             HHHHHHH-cCCCCCCCCCCCCcHHHHHHhhCC----HHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhc-
Q 026440          129 IVELLIS-RGAKINSKDKVGCTALHRGASTGN----SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRH-  202 (238)
Q Consensus       129 ~~~~l~~-~~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-  202 (238)
                      ++++|++ .|++++..+..|.++++.++..+.    ..++++|+++|++++.++..|.||||+|+..++.++++.|++. 
T Consensus       183 ~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~  262 (337)
T 4g8k_A          183 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE  262 (337)
T ss_dssp             HHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTST
T ss_pred             HHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhc
Confidence            9999996 589999999889999887766544    3578888999999999999999999999999999999998875 


Q ss_pred             CCCCccCCCCCCchhhccccccchHHHHHHH
Q 026440          203 GADVDVEDKEGYTVLGRASNDFRPILIDAAK  233 (238)
Q Consensus       203 ~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~  233 (238)
                      |++++.+|..|+||||+|+..++.+++++|.
T Consensus       263 ~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll  293 (337)
T 4g8k_A          263 HIEINDTDSDGKTALLLAVELKLKKIAELLC  293 (337)
T ss_dssp             TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred             CCcccCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            7899999999999999999999977776653

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=6.9e-41  Score=253.14  Aligned_cols=217  Identities=15%  Similarity=0.116  Sum_probs=191.7

Q ss_pred             cchhhhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCC
Q 026440            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (238)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~   82 (238)
                      ++..+..+.++||+|+..|+.+++++|++.+  .+++..  +|.||||+|+..|+.+++++|++.|.+   ++..+..|+
T Consensus        24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~d~~g~   96 (285)
T 3kea_A           24 TFKADVHGHSASYYAIADNNVRLVCTLLNAG--ALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLD---DSQFDDKGN   96 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--GGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCC---TTCCCTTSC
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhCC--CCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCC
Confidence            4556778889999999999999999999887  345544  589999999999999999999998877   666788999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC-chHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHH
Q 026440           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGG-RTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA  161 (238)
Q Consensus        83 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~  161 (238)
                      ||||+|+..|+.+++++|+++|++++..+..| .||||+|+..|+.+++++|+++|.+.... ..|.||||+|+..|+.+
T Consensus        97 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~  175 (285)
T 3kea_A           97 TALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVD  175 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHH
Confidence            99999999999999999999999999999888 79999999999999999999998876332 27899999999999999


Q ss_pred             HHHHHHhcCCCCCccccCCCcH-HHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHHH
Q 026440          162 LCELLIEEGAEVDATDKAGQTP-LMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKA  234 (238)
Q Consensus       162 ~~~~Ll~~~~~~~~~~~~~~t~-l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~  234 (238)
                      ++++|+++|++++.++..|.|| ||+|+..++.+++++|+++|++++..|.       .++..++.+++++|.+
T Consensus       176 ~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~  242 (285)
T 3kea_A          176 MMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIE  242 (285)
T ss_dssp             HHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHH
Confidence            9999999999999999999997 9999999999999999999999999873       5567888888777653

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=9.9e-42  Score=251.19  Aligned_cols=217  Identities=26%  Similarity=0.283  Sum_probs=190.5

Q ss_pred             hhhccChHHHHHHHcCChHHHHHHHHHHhhh--hcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCc
Q 026440            6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLLK--SLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWA   83 (238)
Q Consensus         6 ~~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~--~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t   83 (238)
                      .+..+.++||+|+..|+.+++++|++.+...  +++..+..|.||||+|+..|+.+++++|++.|.+   ++..+..|.|
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t   80 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD---PELRDFRGNT   80 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC---SCCCCTTCCC
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCC
Confidence            4567889999999999999999999887432  5788899999999999999999999999988877   6667889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCC------CcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCcHHHHHHh
Q 026440           84 PIHSAASIGNVTIVEMLLSKGAD------VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK-VGCTALHRGAS  156 (238)
Q Consensus        84 ~l~~a~~~~~~~~~~~Ll~~~~~------~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~-~~~t~l~~a~~  156 (238)
                      |||+|+..++.+++++|++.+..      .+..+..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+.
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~  160 (236)
T 1ikn_D           81 PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD  160 (236)
T ss_dssp             HHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHH
Confidence            99999999999999999999875      455677899999999999999999999999999999987 89999999999


Q ss_pred             hCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCc--cCCCCCCchhhccccccc
Q 026440          157 TGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD--VEDKEGYTVLGRASNDFR  225 (238)
Q Consensus       157 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~--~~~~~g~tpl~~a~~~~~  225 (238)
                      .++.+++++|+++|++++.++..|.|||++|+..++.+++++|+++|+++.  ..+..|.||.+.+.....
T Consensus       161 ~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~  231 (236)
T 1ikn_D          161 LQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTE  231 (236)
T ss_dssp             TTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC-----
T ss_pred             cCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhccccc
Confidence            999999999999999999999999999999999999999999999999876  888899999998876543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.4e-39  Score=239.85  Aligned_cols=194  Identities=25%  Similarity=0.388  Sum_probs=184.6

Q ss_pred             hcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCch
Q 026440           37 SLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRT  116 (238)
Q Consensus        37 ~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  116 (238)
                      +++..+..|.||||+|+..|+.+++++|++.+.+   ++..+..|.|||++|+..|+.+++++|++.|++++..+..|.|
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t   79 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN---IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGST   79 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCC
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCC---cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCc
Confidence            4667889999999999999999999999998877   6677889999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHH
Q 026440          117 ALHYAASKGWLKIVELLISRG-AKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEV  195 (238)
Q Consensus       117 ~l~~a~~~~~~~~~~~l~~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  195 (238)
                      ||++|+..|+.+++++|++.+ .+++..+..|.||||.|+..++.+++++|+++|++++.++..|.||||+|+..++.++
T Consensus        80 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  159 (237)
T 3b7b_A           80 CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDI  159 (237)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHH
Confidence            999999999999999999998 8899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHH
Q 026440          196 ALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAK  233 (238)
Q Consensus       196 ~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~  233 (238)
                      +++|+++|++++.+|..|.||+|+|+..++.+++++|.
T Consensus       160 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  197 (237)
T 3b7b_A          160 AEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFL  197 (237)
T ss_dssp             HHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHH
Confidence            99999999999999999999999999999988887764

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.8e-40  Score=258.14  Aligned_cols=226  Identities=16%  Similarity=0.160  Sum_probs=200.4

Q ss_pred             ccchhhhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhh----cccccc----
Q 026440            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSV----DESANV----   73 (238)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~----~~~~~~----   73 (238)
                      |++..+..+.++||+|+..|+.++|++|++.+.    ...+..|.||||+|+..|+.+++++|++.    +..+..    
T Consensus        45 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  120 (364)
T 3ljn_A           45 SPTIQNRFGCTALHLACKFGCVDTAKYLASVGE----VHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNE  120 (364)
T ss_dssp             CTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC----CCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTC
T ss_pred             CccccCCCCCcHHHHHHHcCCHHHHHHHHHCCC----CccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhh
Confidence            456667788999999999999999999999983    33345799999999999999999999997    444221    


Q ss_pred             ----------cccccCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCC--
Q 026440           74 ----------VNAVDEEGWAPIHSAASIG--NVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK--  139 (238)
Q Consensus        74 ----------~~~~~~~~~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~--  139 (238)
                                .+..+..|.||||+|+..|  +.+++++|++.|++++..+..|.|||++|+..|+.+++++|++.|++  
T Consensus       121 ~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~  200 (364)
T 3ljn_A          121 CDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKS  200 (364)
T ss_dssp             CCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSS
T ss_pred             cchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccc
Confidence                      1226778999999999999  99999999999999999999999999999999999999999999998  


Q ss_pred             ---CCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCcc--------
Q 026440          140 ---INSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDV--------  208 (238)
Q Consensus       140 ---~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~--------  208 (238)
                         ++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.        
T Consensus       201 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  280 (364)
T 3ljn_A          201 SLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNG  280 (364)
T ss_dssp             SCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSS
T ss_pred             cccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCc
Confidence               999999999999999999999999999999999999999999999999999999999999999877533        


Q ss_pred             ----CCCCCCchhhccccccchHHHHH
Q 026440          209 ----EDKEGYTVLGRASNDFRPILIDA  231 (238)
Q Consensus       209 ----~~~~g~tpl~~a~~~~~~~~~~~  231 (238)
                          .+..|++|++.|...++.+.+..
T Consensus       281 ~~~~~~~~~~~~l~~aa~~~~~~~v~~  307 (364)
T 3ljn_A          281 TTVLPDRVVWLDFVPAAADPSKQEVLQ  307 (364)
T ss_dssp             SSBCGGGCCCCTTSCSSCCHHHHHHHH
T ss_pred             ccccccccccccchhhhhccCHHHHHH
Confidence                45678999999998886544433

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.8e-40  Score=245.88  Aligned_cols=196  Identities=27%  Similarity=0.332  Sum_probs=152.6

Q ss_pred             hcCCCCCCCchHHHHHHHcC-------------CHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHc
Q 026440           37 SLSLRNDDDRTLLHVAASCG-------------HPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK  103 (238)
Q Consensus        37 ~~~~~~~~~~t~L~~A~~~~-------------~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  103 (238)
                      +++.+|..|.||||+|+..|             +.+++++|++.+...  ....+..|+||||+|+..|+.+++++|++.
T Consensus         2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~--~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~   79 (253)
T 1yyh_A            2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASL--HNQTDRTGETALHLAARYSRSDAAKRLLEA   79 (253)
T ss_dssp             ----------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCc--ccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence            46778899999999999987             899999999987663  234578999999999999999999999999


Q ss_pred             CCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCc
Q 026440          104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGA-KINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQT  182 (238)
Q Consensus       104 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t  182 (238)
                      |++++..+..|.||||+|+..|+.+++++|++.+. +++..+..|.||||+|+..++.+++++|+++|++++..+..|.|
T Consensus        80 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t  159 (253)
T 1yyh_A           80 SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKS  159 (253)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCB
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCC
Confidence            99999999999999999999999999999999987 88999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHHH
Q 026440          183 PLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKA  234 (238)
Q Consensus       183 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~  234 (238)
                      |||+|+..++.+++++|+++|++++.+|..|.|||++|+..++.+++++|..
T Consensus       160 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~  211 (253)
T 1yyh_A          160 ALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD  211 (253)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999888877754

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=7.1e-39  Score=233.91  Aligned_cols=197  Identities=25%  Similarity=0.283  Sum_probs=185.3

Q ss_pred             hhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHH
Q 026440            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH   86 (238)
Q Consensus         7 ~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~   86 (238)
                      +..+.++||+|+..|+.+++++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+..  ..+..+..|.|||+
T Consensus        22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~--~~~~~~~~g~t~L~   97 (223)
T 2f8y_A           22 DRTGETALHLAARYSRSDAAKRLLEAS--ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT--DLDARMHDGTTPLI   97 (223)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTS--CTTCCCTTCCCHHH
T ss_pred             CCCCCchHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--CcccCCCCCCcHHH
Confidence            567888999999999999999999886  56778899999999999999999999999987652  25667889999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHH
Q 026440           87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL  166 (238)
Q Consensus        87 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  166 (238)
                      +|+..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|
T Consensus        98 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  177 (223)
T 2f8y_A           98 LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL  177 (223)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCc
Q 026440          167 IEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD  207 (238)
Q Consensus       167 l~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~  207 (238)
                      +++|++++.++..|.||+++|+..++.+++++|+++|+...
T Consensus       178 l~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          178 LDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             HHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred             HHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence            99999999999999999999999999999999999998754

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=4.3e-39  Score=237.64  Aligned_cols=196  Identities=27%  Similarity=0.371  Sum_probs=178.3

Q ss_pred             CCCCCCCchHHHHHHHcCCHHHHHHHHhhc-ccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchH
Q 026440           39 SLRNDDDRTLLHVAASCGHPEVVEILLSVD-ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTA  117 (238)
Q Consensus        39 ~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  117 (238)
                      +.+|..|.||||+|+..|+.+++++|++.. ..+..++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   82 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA   82 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence            456889999999999999999999999731 1122367788899999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCC----CCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccc-cCCCcHHHHHHHhCC
Q 026440          118 LHYAASKGWLKIVELLISRGA----KINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD-KAGQTPLMNAVICYN  192 (238)
Q Consensus       118 l~~a~~~~~~~~~~~l~~~~~----~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~~~  192 (238)
                      |++|+..++.+++++|++.+.    +++..+..|.||||.|+..++.+++++|+++|++++..+ ..|.||||+|+..++
T Consensus        83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~  162 (241)
T 1k1a_A           83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS  162 (241)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCC
Confidence            999999999999999999987    788889999999999999999999999999999999988 789999999999999


Q ss_pred             HHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHHH
Q 026440          193 KEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKA  234 (238)
Q Consensus       193 ~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~  234 (238)
                      .+++++|+++|++++.+|..|.||+|+|+..++.+++++|..
T Consensus       163 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  204 (241)
T 1k1a_A          163 LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR  204 (241)
T ss_dssp             HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999999999999999999999888777653

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.4e-40  Score=250.21  Aligned_cols=207  Identities=18%  Similarity=0.189  Sum_probs=188.3

Q ss_pred             HHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHH
Q 026440           18 AETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIV   97 (238)
Q Consensus        18 ~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~   97 (238)
                      +...+.+.+..++...   +++.+|..|.||||+|+..|+.+++++|++.|.++   +..  +|+||||+|+..|+.+++
T Consensus         7 i~~~~~~~v~~lL~~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~--~g~t~L~~A~~~g~~~~v   78 (285)
T 3kea_A            7 INTWKSKQLKSFLSSK---DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK---NLL--ENEFPLHQAATLEDTKIV   78 (285)
T ss_dssp             GGGCCHHHHHHHHHST---TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG---SCC--TTCCHHHHHTTSSSCHHH
T ss_pred             HHhcCHHHHHHHHHhC---CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC---CCC--CCCCHHHHHHHcCCHHHH
Confidence            4566777777777665   57888999999999999999999999999988773   333  589999999999999999


Q ss_pred             HHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC-CcHHHHHHhhCCHHHHHHHHhcCCCCCcc
Q 026440           98 EMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG-CTALHRGASTGNSALCELLIEEGAEVDAT  176 (238)
Q Consensus        98 ~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~-~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~  176 (238)
                      ++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+..| .||||+|+..++.+++++|+++|.+....
T Consensus        79 ~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  158 (285)
T 3kea_A           79 KILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL  158 (285)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC
T ss_pred             HHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc
Confidence            99999999999999999999999999999999999999999999999999 79999999999999999999999877322


Q ss_pred             ccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCch-hhccccccchHHHHHHH
Q 026440          177 DKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTV-LGRASNDFRPILIDAAK  233 (238)
Q Consensus       177 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tp-l~~a~~~~~~~~~~~~~  233 (238)
                       ..|.||||+|+..++.+++++|+++|++++.+|..|.|| |++|+..++.+++++|.
T Consensus       159 -~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll  215 (285)
T 3kea_A          159 -AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALF  215 (285)
T ss_dssp             -STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHT
T ss_pred             -cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHH
Confidence             278999999999999999999999999999999999998 99999999977777653

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=2.4e-39  Score=237.79  Aligned_cols=188  Identities=25%  Similarity=0.292  Sum_probs=174.3

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhh-cccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-----cccCCCCchH
Q 026440           44 DDRTLLHVAASCGHPEVVEILLSV-DESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADV-----NLKNDGGRTA  117 (238)
Q Consensus        44 ~~~t~L~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~-----~~~~~~~~~~  117 (238)
                      .|.||||.|+..|+.+++++|++. +.+   ++..+..|+||||+|+..|+.+++++|++.|+++     +..+..|.||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~   78 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCE---VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTA   78 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCC---cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCH
Confidence            489999999999999999999986 555   6778899999999999999999999999999876     5566789999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCC-------------CCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHH
Q 026440          118 LHYAASKGWLKIVELLISRGAKINSKDK-------------VGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL  184 (238)
Q Consensus       118 l~~a~~~~~~~~~~~l~~~~~~~~~~~~-------------~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l  184 (238)
                      ||+|+..|+.+++++|+++|++++..+.             .|.||||+|+..++.+++++|+++|++++.+|..|.|||
T Consensus        79 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L  158 (232)
T 2rfa_A           79 LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL  158 (232)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence            9999999999999999999999988765             699999999999999999999999999999999999999


Q ss_pred             HHHHHhCCHHHH----HHHHhcCCCC------ccCCCCCCchhhccccccchHHHHHHHH
Q 026440          185 MNAVICYNKEVA----LLLIRHGADV------DVEDKEGYTVLGRASNDFRPILIDAAKA  234 (238)
Q Consensus       185 ~~a~~~~~~~~~----~~Ll~~~~~~------~~~~~~g~tpl~~a~~~~~~~~~~~~~~  234 (238)
                      |+|+..++.+++    ++|+++|+++      +.+|..|.||+++|+..++.+++++|.+
T Consensus       159 ~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~  218 (232)
T 2rfa_A          159 HILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ  218 (232)
T ss_dssp             HHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999988    9999999998      5889999999999999999888887754

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=2.6e-40  Score=243.60  Aligned_cols=195  Identities=26%  Similarity=0.336  Sum_probs=175.9

Q ss_pred             CCCCCCchHHHHHHHcCCHHHHHHHHhhccc-ccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHH
Q 026440           40 LRNDDDRTLLHVAASCGHPEVVEILLSVDES-ANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTAL  118 (238)
Q Consensus        40 ~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l  118 (238)
                      .+|..|.||||+|+..|+.+++++|++.+.. +..++..+..|.||||+|+..++.+++++|++.|++++.++..|.|||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   82 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL   82 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            4578899999999999999999999987543 223677888999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCC------CCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCcccc-CCCcHHHHHHHhC
Q 026440          119 HYAASKGWLKIVELLISRGAK------INSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDK-AGQTPLMNAVICY  191 (238)
Q Consensus       119 ~~a~~~~~~~~~~~l~~~~~~------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~~t~l~~a~~~~  191 (238)
                      |+|+..|+.+++++|++.+.+      ++..+..|.||||+|+..++.+++++|+++|++++.++. .|.||||+|+..+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~  162 (236)
T 1ikn_D           83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ  162 (236)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC
Confidence            999999999999999999876      456778899999999999999999999999999999987 9999999999999


Q ss_pred             CHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHHH
Q 026440          192 NKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKA  234 (238)
Q Consensus       192 ~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~  234 (238)
                      +.+++++|+++|++++.+|..|.||+++|+..++.+++++|..
T Consensus       163 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~  205 (236)
T 1ikn_D          163 NPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ  205 (236)
T ss_dssp             CHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHT
T ss_pred             CHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHH
Confidence            9999999999999999999999999999999999888887754

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.2e-38  Score=246.51  Aligned_cols=226  Identities=24%  Similarity=0.290  Sum_probs=196.5

Q ss_pred             cchhhh-ccChHHHHHHHcCChHHHHHHHHHHhh-------------------------------hhcCCCCCCCchHHH
Q 026440            3 MDIDQT-IKDKDLFKAAETGDSSTFKSLSKQQLL-------------------------------KSLSLRNDDDRTLLH   50 (238)
Q Consensus         3 ~~~~~~-~~~~~l~~a~~~g~~~~v~~l~~~~~~-------------------------------~~~~~~~~~~~t~L~   50 (238)
                      ++..+. .+.++||+|+..|+.++|+.|++.+..                               .+++..+..|.||||
T Consensus        51 vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~  130 (337)
T 4g8k_A           51 VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFM  130 (337)
T ss_dssp             TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHH
T ss_pred             CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHH
Confidence            444433 478899999999999999999987531                               235567888999999


Q ss_pred             HHHHcCCHHHHHHHHhhccccccc-------ccccCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCchHHHHHH
Q 026440           51 VAASCGHPEVVEILLSVDESANVV-------NAVDEEGWAPIHSAASIGNVTIVEMLLS-KGADVNLKNDGGRTALHYAA  122 (238)
Q Consensus        51 ~A~~~~~~~~~~~Ll~~~~~~~~~-------~~~~~~~~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~l~~a~  122 (238)
                      +|+..|+.++++++++.|.+....       ...+..|.||||+|+..|+.+++++|++ .|++++.++..|.++++.++
T Consensus       131 ~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~  210 (337)
T 4g8k_A          131 EAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHAL  210 (337)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHH
Confidence            999999999999999988765432       2345678999999999999999999996 59999999999999999887


Q ss_pred             HcCC----HHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhc-CCCCCccccCCCcHHHHHHHhCCHHHHH
Q 026440          123 SKGW----LKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEE-GAEVDATDKAGQTPLMNAVICYNKEVAL  197 (238)
Q Consensus       123 ~~~~----~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~  197 (238)
                      ..+.    ..++++|+++|++++..+..|.||||.|+..++.+++++|+.. |++++.++..|.||||+|+..|+.++++
T Consensus       211 ~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~  290 (337)
T 4g8k_A          211 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE  290 (337)
T ss_dssp             HHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred             HHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHH
Confidence            6543    4688999999999999999999999999999999999999985 8999999999999999999999999999


Q ss_pred             HHHhcCCCCccCCCCCCchhhccccccchHHHHHHH
Q 026440          198 LLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAK  233 (238)
Q Consensus       198 ~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~  233 (238)
                      +|+++|++++..     +||++|+.+++.+++++|.
T Consensus       291 ~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll  321 (337)
T 4g8k_A          291 LLCKRGASTDCG-----DLVMTARRNYDHSLVKVLL  321 (337)
T ss_dssp             HHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHH
Confidence            999999998764     5999999999988877764

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=3.2e-39  Score=237.00  Aligned_cols=197  Identities=30%  Similarity=0.359  Sum_probs=186.0

Q ss_pred             hhhhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcH
Q 026440            5 IDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAP   84 (238)
Q Consensus         5 ~~~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~   84 (238)
                      ..+..+.++||.|+..|+.+++++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+.+   ++..+..|.||
T Consensus        35 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~  109 (231)
T 3aji_A           35 RTDQDSRTALHWACSAGHTEIVEFLLQLG--VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH---VNAVNQNGCTP  109 (231)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCH
T ss_pred             cCCCCCCCHHHHHHHcCcHHHHHHHHHhC--CCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCC---CCCCCCCCCCH
Confidence            34667889999999999999999999886  56788899999999999999999999999998877   66778899999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHH
Q 026440           85 IHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCE  164 (238)
Q Consensus        85 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  164 (238)
                      ||+|+..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.++++
T Consensus       110 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  189 (231)
T 3aji_A          110 LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAK  189 (231)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCC
Q 026440          165 LLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADV  206 (238)
Q Consensus       165 ~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~  206 (238)
                      +|+++|++++.++..|.||+++|+..++.+++++|.++|+++
T Consensus       190 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~i  231 (231)
T 3aji_A          190 FLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEASM  231 (231)
T ss_dssp             HHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccccC
Confidence            999999999999999999999999999999999999988764

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.3e-38  Score=228.97  Aligned_cols=187  Identities=26%  Similarity=0.396  Sum_probs=119.6

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHH
Q 026440           44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS  123 (238)
Q Consensus        44 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~  123 (238)
                      .+.||||.|+..|+.+.++.|+..+.  ..++..+..|.||||+|+..++.+++++|++.|++++..+..|.|||++|+.
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~   81 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDTT--YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGA   81 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            45566666666666666666665432  1244555666666666666666666666666666666666666666666666


Q ss_pred             cCCHHHHHHHH-HcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcC-CCCCccccCCCcHHHHHHHhCC-----HHHH
Q 026440          124 KGWLKIVELLI-SRGAKINSKDKVGCTALHRGASTGNSALCELLIEEG-AEVDATDKAGQTPLMNAVICYN-----KEVA  196 (238)
Q Consensus       124 ~~~~~~~~~l~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~t~l~~a~~~~~-----~~~~  196 (238)
                      .|+.+++++|+ ..+.+++..+..|.||||.|+..++.+++++|+++| ++++.++..|.||||+|+..++     .+++
T Consensus        82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v  161 (201)
T 3hra_A           82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV  161 (201)
T ss_dssp             TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred             cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence            66666666666 345566666666666666666666666666666666 6666666666666666666665     6666


Q ss_pred             HHHHhcCCCCccCCCCCCchhhccccccchHHHHHH
Q 026440          197 LLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAA  232 (238)
Q Consensus       197 ~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~  232 (238)
                      ++|+++|++++.+|..|.||+++|+..++.+++++|
T Consensus       162 ~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L  197 (201)
T 3hra_A          162 KLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL  197 (201)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHH
Confidence            666666666666666666666666666665555544

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=2e-38  Score=228.00  Aligned_cols=192  Identities=24%  Similarity=0.324  Sum_probs=180.7

Q ss_pred             hccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHH
Q 026440            8 TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS   87 (238)
Q Consensus         8 ~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~   87 (238)
                      +.+.++|+.|+..|+.+.++.|+..+ ..+++..+..|.||||+|+..|+.+++++|++.|.+   ++..+..|.|||++
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~   78 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDT-TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD---INLQNSISDSPYLY   78 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHH
Confidence            46778999999999999999999887 457888899999999999999999999999998877   66678899999999


Q ss_pred             HHHcCCHHHHHHHH-HcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHhhCC-----H
Q 026440           88 AASIGNVTIVEMLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG-AKINSKDKVGCTALHRGASTGN-----S  160 (238)
Q Consensus        88 a~~~~~~~~~~~Ll-~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~-~~~~~~~~~~~t~l~~a~~~~~-----~  160 (238)
                      |+..++.+++++|+ ..+.+++..+..|.||||+|+..|+.+++++|++.| .+++..+..|.||||.|+..++     .
T Consensus        79 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~  158 (201)
T 3hra_A           79 AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ  158 (201)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHH
T ss_pred             HHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHH
Confidence            99999999999999 567788889999999999999999999999999999 9999999999999999999998     9


Q ss_pred             HHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcC
Q 026440          161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHG  203 (238)
Q Consensus       161 ~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  203 (238)
                      +++++|+++|++++.++..|.||||+|+..++.+++++|+++|
T Consensus       159 ~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          159 DIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            9999999999999999999999999999999999999999886

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=2e-39  Score=243.90  Aligned_cols=215  Identities=22%  Similarity=0.293  Sum_probs=176.1

Q ss_pred             chhhhccChHHHHHHHcCChHHHHHHHHHHhhhhcC------CCCCCCchHHHHHHHc---CCHHHHHHHHhhcccccc-
Q 026440            4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLS------LRNDDDRTLLHVAASC---GHPEVVEILLSVDESANV-   73 (238)
Q Consensus         4 ~~~~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~------~~~~~~~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~-   73 (238)
                      +..+..+.++||.|+..|+.++|+.|++.+......      ..+..|.||||+|+..   |+.+++++|++.+..... 
T Consensus         7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~   86 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL   86 (273)
T ss_dssp             ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred             CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence            345677889999999999999999999876432222      3477899999999987   999999999998765321 


Q ss_pred             -------cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCC--------------CCchHHHHHHHcCCHHHHHH
Q 026440           74 -------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND--------------GGRTALHYAASKGWLKIVEL  132 (238)
Q Consensus        74 -------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~--------------~~~~~l~~a~~~~~~~~~~~  132 (238)
                             ....+..|.||||+|+..|+.+++++|+++|++++..+.              .|.||||+|+..|+.+++++
T Consensus        87 ~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  166 (273)
T 2pnn_A           87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF  166 (273)
T ss_dssp             HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHH
T ss_pred             hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence                   122566899999999999999999999999999998886              79999999999999999999


Q ss_pred             HHH---cCCCCCCCCCCCCcHHHHHHhhCC---------HHHHHHHHhcCCCCC-------ccccCCCcHHHHHHHhCCH
Q 026440          133 LIS---RGAKINSKDKVGCTALHRGASTGN---------SALCELLIEEGAEVD-------ATDKAGQTPLMNAVICYNK  193 (238)
Q Consensus       133 l~~---~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~Ll~~~~~~~-------~~~~~~~t~l~~a~~~~~~  193 (238)
                      |++   .|++++..|..|.||||+|+..++         .+++++|+++|++++       .++..|.||||+|+..|+.
T Consensus       167 Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~  246 (273)
T 2pnn_A          167 LLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKI  246 (273)
T ss_dssp             HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred             HHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChH
Confidence            999   999999999999999999999988         799999999999886       4899999999999999999


Q ss_pred             HHHHHHHhcCC-CCccCCCCCCchhh
Q 026440          194 EVALLLIRHGA-DVDVEDKEGYTVLG  218 (238)
Q Consensus       194 ~~~~~Ll~~~~-~~~~~~~~g~tpl~  218 (238)
                      +++++|+++|+ ++......+.+|-+
T Consensus       247 ~iv~~Ll~~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          247 GVLAYILQREIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             HHHHHHHHHHTC--------------
T ss_pred             HHHHHHHHCCCCCchhhhhhhhhccC
Confidence            99999999999 88888777776643

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=3.5e-38  Score=230.98  Aligned_cols=187  Identities=29%  Similarity=0.309  Sum_probs=173.8

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCcc-cCCCCchHHHHH
Q 026440           45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG--ADVNL-KNDGGRTALHYA  121 (238)
Q Consensus        45 ~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~--~~~~~-~~~~~~~~l~~a  121 (238)
                      |.||||+|+..|+.+++++|++.+...  ....+..|.||||+|+..|+.+++++|++.|  .+++. .+..|.|||++|
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A   79 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSL--LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA   79 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGG--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccc--cccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHH
Confidence            689999999999999999999977552  3447889999999999999999999999999  55555 678899999999


Q ss_pred             HHcCCHHHHHHHHHcC--CCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHH
Q 026440          122 ASKGWLKIVELLISRG--AKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL  199 (238)
Q Consensus       122 ~~~~~~~~~~~l~~~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  199 (238)
                      +..|+.+++++|++.|  .+++..+..|.||||.|+..++.+++++|+++|++++.++..|.||||+|+..++.+++++|
T Consensus        80 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  159 (228)
T 2dzn_A           80 CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL  159 (228)
T ss_dssp             HHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            9999999999999998  88888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcC-CCCccCCCCCCchhhccccccchHHHHHHH
Q 026440          200 IRHG-ADVDVEDKEGYTVLGRASNDFRPILIDAAK  233 (238)
Q Consensus       200 l~~~-~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~  233 (238)
                      +++| ++++.+|..|.||||+|+..++.+++++|.
T Consensus       160 l~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll  194 (228)
T 2dzn_A          160 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV  194 (228)
T ss_dssp             HTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999 999999999999999999999988887765

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=4.1e-40  Score=257.83  Aligned_cols=221  Identities=26%  Similarity=0.305  Sum_probs=196.8

Q ss_pred             hhhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCC-CCCchHHHHHHHcCCHHHHHHHH--------hhccccccccc
Q 026440            6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRN-DDDRTLLHVAASCGHPEVVEILL--------SVDESANVVNA   76 (238)
Q Consensus         6 ~~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~-~~~~t~L~~A~~~~~~~~~~~Ll--------~~~~~~~~~~~   76 (238)
                      ++..+.++||.|+..| .++++.|+.    .+++..+ ..|.||||+|+..|+.+++++|+        +.|.+   ++.
T Consensus        90 ~~~~g~t~L~~Aa~~~-~~~~~~L~~----~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~---vn~  161 (373)
T 2fo1_E           90 PEPESPIKLHTEAAGS-YAITEPITR----ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD---VNA  161 (373)
T ss_dssp             ----CCCHHHHHHHSS-SCCCSCCST----TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC---TTC
T ss_pred             CCCCCccHHHHHhcCC-chHHHHhcc----ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC---CcC
Confidence            3566788899999955 578888754    3567777 68999999999999998888876        55665   677


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcC---CCCCCCCCCCCcHHHH
Q 026440           77 VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG---AKINSKDKVGCTALHR  153 (238)
Q Consensus        77 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~---~~~~~~~~~~~t~l~~  153 (238)
                      .+..|.||||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|++.+   .+++..+..|.||||+
T Consensus       162 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~  241 (373)
T 2fo1_E          162 MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMI  241 (373)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHH
T ss_pred             CCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHH
Confidence            8899999999999999999999999999999999999999999999999999999999987   7899999999999999


Q ss_pred             HHhhC---CHHHHHHHHhcCCCCCc--------cccCCCcHHHHHHHhCCHHHHHHHHhcC-CCCccCCCCCCchhhccc
Q 026440          154 GASTG---NSALCELLIEEGAEVDA--------TDKAGQTPLMNAVICYNKEVALLLIRHG-ADVDVEDKEGYTVLGRAS  221 (238)
Q Consensus       154 a~~~~---~~~~~~~Ll~~~~~~~~--------~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~g~tpl~~a~  221 (238)
                      |+..+   +.+++++|+++|++++.        .+..|.||||+|+..|+.+++++|++++ ++++.+|..|.||||+|+
T Consensus       242 A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~  321 (373)
T 2fo1_E          242 VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAA  321 (373)
T ss_dssp             HHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHH
T ss_pred             HHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHH
Confidence            99998   89999999999999886        5668999999999999999999999886 999999999999999999


Q ss_pred             cccchHHHHHHHH
Q 026440          222 NDFRPILIDAAKA  234 (238)
Q Consensus       222 ~~~~~~~~~~~~~  234 (238)
                      ..++.+++++|..
T Consensus       322 ~~g~~~iv~~Ll~  334 (373)
T 2fo1_E          322 QEGRIEVVMYLIQ  334 (373)
T ss_dssp             HHTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHH
Confidence            9999888887754

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=5.3e-38  Score=218.84  Aligned_cols=160  Identities=43%  Similarity=0.608  Sum_probs=141.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCC
Q 026440           47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGW  126 (238)
Q Consensus        47 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~  126 (238)
                      ++|+.||+.|+.+++++|++.|.+   ++.++..|+|||++|+..++.+++++|++.|++++.++..|.||||+|+..|+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gad---vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~   82 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGAD---VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGH   82 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCC
Confidence            468899999999999999988877   67778899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCC
Q 026440          127 LKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADV  206 (238)
Q Consensus       127 ~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~  206 (238)
                      .+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|+++
T Consensus        83 ~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~i  162 (169)
T 4gpm_A           83 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL  162 (169)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred             HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccC
Q 026440          207 DVE  209 (238)
Q Consensus       207 ~~~  209 (238)
                      +..
T Consensus       163 e~~  165 (169)
T 4gpm_A          163 EHH  165 (169)
T ss_dssp             ---
T ss_pred             CCC
Confidence            754

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=1.5e-38  Score=237.00  Aligned_cols=200  Identities=23%  Similarity=0.291  Sum_probs=161.8

Q ss_pred             ccChHHHHHHHcCChHHHHHHHHHHh--hhhcCC----CCCCCchHHHHHHHc---CCHHHHHHHHhhcccccccc----
Q 026440            9 IKDKDLFKAAETGDSSTFKSLSKQQL--LKSLSL----RNDDDRTLLHVAASC---GHPEVVEILLSVDESANVVN----   75 (238)
Q Consensus         9 ~~~~~l~~a~~~g~~~~v~~l~~~~~--~~~~~~----~~~~~~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~~~----   75 (238)
                      ++.++||.|+..|+.+.|+.|++...  ..+++.    .+..|.||||+|+..   |+.+++++|++.+.......    
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            35788999999999986655554211  245666    788899999999999   99999999999887754222    


Q ss_pred             ----cccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCC-------------CchHHHHHHHcCCHHHHHHHHH---
Q 026440           76 ----AVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG-------------GRTALHYAASKGWLKIVELLIS---  135 (238)
Q Consensus        76 ----~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-------------~~~~l~~a~~~~~~~~~~~l~~---  135 (238)
                          ..+..|.||||+|+..|+.+++++|+++|++++..+..             |.||||+|+..|+.+++++|++   
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~  160 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH  160 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence                23467899999999999999999999999998887765             8888888888888888888888   


Q ss_pred             cCCCCCCCCCCCCcHHHHHHh--hCCHH-------HHHHHHhcCCCC-------CccccCCCcHHHHHHHhCCHHHHHHH
Q 026440          136 RGAKINSKDKVGCTALHRGAS--TGNSA-------LCELLIEEGAEV-------DATDKAGQTPLMNAVICYNKEVALLL  199 (238)
Q Consensus       136 ~~~~~~~~~~~~~t~l~~a~~--~~~~~-------~~~~Ll~~~~~~-------~~~~~~~~t~l~~a~~~~~~~~~~~L  199 (238)
                      .|++++..|..|.||||+|+.  .++.+       ++++|+++|+++       +.++..|.||||+|+..|+.+++++|
T Consensus       161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~L  240 (256)
T 2etb_A          161 QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI  240 (256)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHH
Confidence            888888888888888888888  67777       888888888888       77888888888888888888888888


Q ss_pred             HhcCCCCcc
Q 026440          200 IRHGADVDV  208 (238)
Q Consensus       200 l~~~~~~~~  208 (238)
                      +++|++...
T Consensus       241 l~~g~~~~~  249 (256)
T 2etb_A          241 LQREFSGAA  249 (256)
T ss_dssp             HHHHHHHHH
T ss_pred             HhCCCCCCC
Confidence            888776543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=3.7e-38  Score=234.83  Aligned_cols=187  Identities=26%  Similarity=0.273  Sum_probs=170.6

Q ss_pred             CchHHHHHHHcCCHH----HHHHHHhhccccccccc----ccCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCccc---
Q 026440           45 DRTLLHVAASCGHPE----VVEILLSVDESANVVNA----VDEEGWAPIHSAASI---GNVTIVEMLLSKGADVNLK---  110 (238)
Q Consensus        45 ~~t~L~~A~~~~~~~----~~~~Ll~~~~~~~~~~~----~~~~~~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~---  110 (238)
                      |+||||.|+..|+.+    ++++|++.+.+   ++.    .+..|+||||+|+..   |+.+++++|++.|++++..   
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~---i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   78 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKY---LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL   78 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCC---TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCC---cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence            789999999999997    56777777776   555    688999999999999   9999999999998766532   


Q ss_pred             --------CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-------------CCcHHHHHHhhCCHHHHHHHHh-
Q 026440          111 --------NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV-------------GCTALHRGASTGNSALCELLIE-  168 (238)
Q Consensus       111 --------~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~-------------~~t~l~~a~~~~~~~~~~~Ll~-  168 (238)
                              +..|.||||+|+..|+.+++++|+++|++++..+..             |.||||+|+..|+.+++++|++ 
T Consensus        79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~  158 (256)
T 2etb_A           79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN  158 (256)
T ss_dssp             GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred             cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence                    367999999999999999999999999999998876             9999999999999999999999 


Q ss_pred             --cCCCCCccccCCCcHHHHHHH--hCCHH-------HHHHHHhcCCCC-------ccCCCCCCchhhccccccchHHHH
Q 026440          169 --EGAEVDATDKAGQTPLMNAVI--CYNKE-------VALLLIRHGADV-------DVEDKEGYTVLGRASNDFRPILID  230 (238)
Q Consensus       169 --~~~~~~~~~~~~~t~l~~a~~--~~~~~-------~~~~Ll~~~~~~-------~~~~~~g~tpl~~a~~~~~~~~~~  230 (238)
                        +|++++.++..|.||||+|+.  .++.+       ++++|+++|+++       +.+|..|.||||+|+..++.++++
T Consensus       159 ~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~  238 (256)
T 2etb_A          159 PHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFR  238 (256)
T ss_dssp             SSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             cccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHH
Confidence              999999999999999999999  78888       999999999999       999999999999999999988888


Q ss_pred             HHHH
Q 026440          231 AAKA  234 (238)
Q Consensus       231 ~~~~  234 (238)
                      +|..
T Consensus       239 ~Ll~  242 (256)
T 2etb_A          239 HILQ  242 (256)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7754

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=4.3e-38  Score=239.48  Aligned_cols=216  Identities=27%  Similarity=0.330  Sum_probs=189.2

Q ss_pred             HHHHcCChHHHHHHHHHHhhhh-------cCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHH
Q 026440           16 KAAETGDSSTFKSLSKQQLLKS-------LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA   88 (238)
Q Consensus        16 ~a~~~g~~~~v~~l~~~~~~~~-------~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a   88 (238)
                      .++..+..+.++.++.......       ....+..+.||||.||..|+.+++++|++.|.+   ++..+..|.||||+|
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A   80 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD---INYANVDGLTALHQA   80 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCC---TTCBCTTCCBHHHHH
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCC---CcccCCCCCCHHHHH
Confidence            4677888888888887652211       112233567999999999999999999998877   677788999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHh
Q 026440           89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIE  168 (238)
Q Consensus        89 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  168 (238)
                      +..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||+++|+..+..+++++++.
T Consensus        81 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~  160 (299)
T 1s70_B           81 CIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN  160 (299)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988775


Q ss_pred             c-CCCCC--------------------------ccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccc
Q 026440          169 E-GAEVD--------------------------ATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS  221 (238)
Q Consensus       169 ~-~~~~~--------------------------~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~  221 (238)
                      . +.+++                          ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~  240 (299)
T 1s70_B          161 RQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAA  240 (299)
T ss_dssp             HHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHH
T ss_pred             hcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence            3 44432                          24567999999999999999999999999999999999999999999


Q ss_pred             cccchHHHHHHHH
Q 026440          222 NDFRPILIDAAKA  234 (238)
Q Consensus       222 ~~~~~~~~~~~~~  234 (238)
                      ..++.+++++|..
T Consensus       241 ~~~~~~~v~~Ll~  253 (299)
T 1s70_B          241 HWGKEEACRILVE  253 (299)
T ss_dssp             HTTCHHHHHHHHH
T ss_pred             hcCCHHHHHHHHH
Confidence            9999888877654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=7.5e-38  Score=234.27  Aligned_cols=194  Identities=24%  Similarity=0.359  Sum_probs=152.9

Q ss_pred             CCCCCCchHHHHHHHcCCHHHHHHHHhhccccc-----ccccccCCCCcHHHHHHHcCCH-HHHHHHHHcCCCCcccCCC
Q 026440           40 LRNDDDRTLLHVAASCGHPEVVEILLSVDESAN-----VVNAVDEEGWAPIHSAASIGNV-TIVEMLLSKGADVNLKNDG  113 (238)
Q Consensus        40 ~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~-----~~~~~~~~~~t~l~~a~~~~~~-~~~~~Ll~~~~~~~~~~~~  113 (238)
                      .+|..+.++|+.||..|+.+++++|++.+....     .++..+..+.+||+.|+..+.. .+++.|++.|++++.++..
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~   85 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD   85 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTT
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC
Confidence            346677899999999999999999998765421     2455667899999999988765 4889999999999999999


Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCH
Q 026440          114 GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNK  193 (238)
Q Consensus       114 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~  193 (238)
                      |.||||+|+..|+.+++++|++.+++++..+..|.||++.|+..++.+++++|++.|++++.++..|.||||+|+..|+.
T Consensus        86 G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~  165 (269)
T 4b93_B           86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHH  165 (269)
T ss_dssp             SCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCG
T ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHH
Q 026440          194 EVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAK  233 (238)
Q Consensus       194 ~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~  233 (238)
                      +++++|+++|++++.++..|.||||+|+..++.+++++|.
T Consensus       166 ~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll  205 (269)
T 4b93_B          166 ELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLL  205 (269)
T ss_dssp             GGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999999988877764

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.8e-36  Score=223.35  Aligned_cols=203  Identities=29%  Similarity=0.305  Sum_probs=180.4

Q ss_pred             ccchhhhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCC
Q 026440            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (238)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~   81 (238)
                      +++..+..+.++|+.|+..|+.+++++|++.+. ......+..|.||||+|+..|+.+++++|++.+..   .+..+..|
T Consensus        34 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g  109 (240)
T 3eu9_A           34 DVRQPDKENVTLLHWAAINNRIDLVKYYISKGA-IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD---PSLIDGEG  109 (240)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTS
T ss_pred             CcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCC-cchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCC---CcccCCCC
Confidence            344556778889999999999999999999872 22334455699999999999999999999998877   56678899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCC-HHHHHHHHHcCCCCCCCCC-CCCcHHHHHHhhCC
Q 026440           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGW-LKIVELLISRGAKINSKDK-VGCTALHRGASTGN  159 (238)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~-~~~~~~l~~~~~~~~~~~~-~~~t~l~~a~~~~~  159 (238)
                      .|||++|+..++.+++++|++.|++++..+..|.||+++|+..+. .+++++|++.|++++..+. .|.||||.|+..++
T Consensus       110 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~  189 (240)
T 3eu9_A          110 CSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGN  189 (240)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTC
T ss_pred             CCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCC
Confidence            999999999999999999999999999999999999999997765 8999999999999999887 89999999999999


Q ss_pred             HHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCcc
Q 026440          160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDV  208 (238)
Q Consensus       160 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~  208 (238)
                      .+++++|+++|++++..+..|.||+++|+..++.+++++|++++++...
T Consensus       190 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~  238 (240)
T 3eu9_A          190 TTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY  238 (240)
T ss_dssp             HHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccCc
Confidence            9999999999999999999999999999999999999999999887654

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.1e-36  Score=212.21  Aligned_cols=151  Identities=42%  Similarity=0.578  Sum_probs=146.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHH
Q 026440           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL  162 (238)
Q Consensus        83 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  162 (238)
                      +.|+.|++.|+.+++++|++.|++++.++..|.||+++|+..++.+++++|++.|++++..+..|.||||+|+..|+.++
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~   85 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV   85 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHH
Q 026440          163 CELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAK  233 (238)
Q Consensus       163 ~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~  233 (238)
                      +++|+++|++++.++.+|+||||+|+..|+.+++++|+++|++++.+|.+|+|||++|+..++.+++++|.
T Consensus        86 v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  156 (169)
T 4gpm_A           86 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLE  156 (169)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999988887765

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=1.3e-37  Score=233.94  Aligned_cols=197  Identities=22%  Similarity=0.246  Sum_probs=170.2

Q ss_pred             cCCCCCCCchHHHHHHHcCCHHHHHHHHhhccccc-ccc----cccCCCCcHHHHHHHc---CCHHHHHHHHHcCCCC--
Q 026440           38 LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESAN-VVN----AVDEEGWAPIHSAASI---GNVTIVEMLLSKGADV--  107 (238)
Q Consensus        38 ~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~-~~~----~~~~~~~t~l~~a~~~---~~~~~~~~Ll~~~~~~--  107 (238)
                      .+..+..|.||||.|+..|+.++++.|++.+.... .++    ..+..|+||||+|+..   |+.+++++|++.|++.  
T Consensus         6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~   85 (273)
T 2pnn_A            6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS   85 (273)
T ss_dssp             -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred             CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence            44568889999999999999999999987543211 122    3478999999999987   9999999999987542  


Q ss_pred             -----c----ccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--------------CCCcHHHHHHhhCCHHHHH
Q 026440          108 -----N----LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK--------------VGCTALHRGASTGNSALCE  164 (238)
Q Consensus       108 -----~----~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~--------------~~~t~l~~a~~~~~~~~~~  164 (238)
                           +    ..+..|.||||+|+..|+.+++++|+++|++++..+.              .|.||||+|+..++.++++
T Consensus        86 ~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~  165 (273)
T 2pnn_A           86 LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVK  165 (273)
T ss_dssp             HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHH
T ss_pred             hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHH
Confidence                 1    2456899999999999999999999999999999887              7999999999999999999


Q ss_pred             HHHh---cCCCCCccccCCCcHHHHHHHhCC---------HHHHHHHHhcCCCCc-------cCCCCCCchhhccccccc
Q 026440          165 LLIE---EGAEVDATDKAGQTPLMNAVICYN---------KEVALLLIRHGADVD-------VEDKEGYTVLGRASNDFR  225 (238)
Q Consensus       165 ~Ll~---~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~Ll~~~~~~~-------~~~~~g~tpl~~a~~~~~  225 (238)
                      +|++   .|++++.++..|+||||+|+..++         .+++++|+++|++++       .+|..|.|||++|+..++
T Consensus       166 ~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~  245 (273)
T 2pnn_A          166 FLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK  245 (273)
T ss_dssp             HHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             HHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhCh
Confidence            9999   999999999999999999999988         899999999999986       589999999999999999


Q ss_pred             hHHHHHHHH
Q 026440          226 PILIDAAKA  234 (238)
Q Consensus       226 ~~~~~~~~~  234 (238)
                      .+++++|..
T Consensus       246 ~~iv~~Ll~  254 (273)
T 2pnn_A          246 IGVLAYILQ  254 (273)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888887753

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=2e-37  Score=231.40  Aligned_cols=201  Identities=25%  Similarity=0.305  Sum_probs=169.2

Q ss_pred             hccChHHHHHHHcCChHHHHHHHHHHh--hhhcCCCC----CCCchHHHHHH---HcCCHHHHHHHHhhcccccc-----
Q 026440            8 TIKDKDLFKAAETGDSSTFKSLSKQQL--LKSLSLRN----DDDRTLLHVAA---SCGHPEVVEILLSVDESANV-----   73 (238)
Q Consensus         8 ~~~~~~l~~a~~~g~~~~v~~l~~~~~--~~~~~~~~----~~~~t~L~~A~---~~~~~~~~~~Ll~~~~~~~~-----   73 (238)
                      .++.+.|+.|+..|+.+.++.|++...  +.+++..+    ..|.||||+|+   ..|+.+++++|++.+..+..     
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   82 (260)
T 3jxi_A            3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI   82 (260)
T ss_dssp             CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH
T ss_pred             cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh
Confidence            467789999999999998777776321  23344333    66999999999   67999999999998764321     


Q ss_pred             ---cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccC--------------CCCchHHHHHHHcCCHHHHHHHHH-
Q 026440           74 ---VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN--------------DGGRTALHYAASKGWLKIVELLIS-  135 (238)
Q Consensus        74 ---~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~--------------~~~~~~l~~a~~~~~~~~~~~l~~-  135 (238)
                         ....+..|+||||+|+..|+.+++++|+++|++++..+              ..|.||||+|+..|+.+++++|++ 
T Consensus        83 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  162 (260)
T 3jxi_A           83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTEN  162 (260)
T ss_dssp             TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred             cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence               33445589999999999999999999999999999887              579999999999999999999999 


Q ss_pred             --cCCCCCCCCCCCCcHHHHHHhhCC---------HHHHHHHHhcCCCC-------CccccCCCcHHHHHHHhCCHHHHH
Q 026440          136 --RGAKINSKDKVGCTALHRGASTGN---------SALCELLIEEGAEV-------DATDKAGQTPLMNAVICYNKEVAL  197 (238)
Q Consensus       136 --~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~Ll~~~~~~-------~~~~~~~~t~l~~a~~~~~~~~~~  197 (238)
                        .|++++..|..|.||||+|+..++         .+++++|+++|+++       +..+..|.||||+|+..|+.++++
T Consensus       163 ~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~  242 (260)
T 3jxi_A          163 GHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQ  242 (260)
T ss_dssp             SSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             cccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHH
Confidence              899999999999999999998877         68999999999888       668889999999999999999999


Q ss_pred             HHHhcCCCCcc
Q 026440          198 LLIRHGADVDV  208 (238)
Q Consensus       198 ~Ll~~~~~~~~  208 (238)
                      +|+++|+++..
T Consensus       243 ~Ll~~g~~~~~  253 (260)
T 3jxi_A          243 HIIRREIADAA  253 (260)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHhCCCccc
Confidence            99998776543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.5e-37  Score=239.16  Aligned_cols=198  Identities=20%  Similarity=0.138  Sum_probs=162.9

Q ss_pred             HHHHHHcCChHHHHHHHHHHhhhhcCC-CCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcC
Q 026440           14 LFKAAETGDSSTFKSLSKQQLLKSLSL-RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIG   92 (238)
Q Consensus        14 l~~a~~~g~~~~v~~l~~~~~~~~~~~-~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~   92 (238)
                      .+.|+..+..++++.|++.+  .+++. .+..|+||||+|+..|+.+++++|++.|.+   ++..+..|+||||+|+..|
T Consensus       101 ~~~a~~~~~~~~~~~l~~~g--~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad---~n~~d~~g~TpLh~A~~~g  175 (327)
T 1sw6_A          101 QHVSFDSLLQEVNDAFPNTQ--LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN---RLYGDNMGESCLVKAVKSV  175 (327)
T ss_dssp             ---CHHHHHHHHHHHCTTSC--CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTBCCTTCCCHHHHHHHSS
T ss_pred             hHHHHHhhHHHHHHHHHhcC--CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHhc
Confidence            35666666667777776654  56777 799999999999999999999999999887   6778899999999999998


Q ss_pred             C---HHHHHHHHHcC-CCCcccCCCCchHHHHHHH----cCCHHHHHHHHHc--------------------CCCCCCCC
Q 026440           93 N---VTIVEMLLSKG-ADVNLKNDGGRTALHYAAS----KGWLKIVELLISR--------------------GAKINSKD  144 (238)
Q Consensus        93 ~---~~~~~~Ll~~~-~~~~~~~~~~~~~l~~a~~----~~~~~~~~~l~~~--------------------~~~~~~~~  144 (238)
                      +   .++++.|++.+ .+++.++..|.||||+|+.    .|+.+++++|++.                    |++++..+
T Consensus       176 ~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~  255 (327)
T 1sw6_A          176 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKN  255 (327)
T ss_dssp             HHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC------------
T ss_pred             ccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccccc
Confidence            8   67788888876 6788899999999999999    8999999999987                    88999999


Q ss_pred             CCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhcccccc
Q 026440          145 KVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDF  224 (238)
Q Consensus       145 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~  224 (238)
                      ..|.||||.|+.      +++|+++  +++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.++
T Consensus       256 ~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          256 GERKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             ----CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             ccCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence            999999999985      8899988  57888999999999999999999999999999999999999999999998764

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=2.2e-36  Score=225.69  Aligned_cols=193  Identities=23%  Similarity=0.248  Sum_probs=167.8

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHH----hhcccccccc-cccCCCCcHHHHHH---HcCCHHHHHHHHHcCCC-------
Q 026440           42 NDDDRTLLHVAASCGHPEVVEILL----SVDESANVVN-AVDEEGWAPIHSAA---SIGNVTIVEMLLSKGAD-------  106 (238)
Q Consensus        42 ~~~~~t~L~~A~~~~~~~~~~~Ll----~~~~~~~~~~-~~~~~~~t~l~~a~---~~~~~~~~~~Ll~~~~~-------  106 (238)
                      +..++++||.|+..|+.+.++.|+    +.+......+ ..+..|.||||+|+   ..|+.+++++|++.|++       
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   81 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF   81 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence            456899999999999999655444    4676633222 22367999999999   77999999999998743       


Q ss_pred             ----CcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC--------------CCCCcHHHHHHhhCCHHHHHHHHh
Q 026440          107 ----VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD--------------KVGCTALHRGASTGNSALCELLIE  168 (238)
Q Consensus       107 ----~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~--------------~~~~t~l~~a~~~~~~~~~~~Ll~  168 (238)
                          ....+..|.||||+|+..|+.+++++|+++|++++..+              ..|.||||+|+..|+.+++++|++
T Consensus        82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  161 (260)
T 3jxi_A           82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE  161 (260)
T ss_dssp             HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred             hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence                33445589999999999999999999999999999988              579999999999999999999999


Q ss_pred             ---cCCCCCccccCCCcHHHHHHHhCC---------HHHHHHHHhcCCCC-------ccCCCCCCchhhccccccchHHH
Q 026440          169 ---EGAEVDATDKAGQTPLMNAVICYN---------KEVALLLIRHGADV-------DVEDKEGYTVLGRASNDFRPILI  229 (238)
Q Consensus       169 ---~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~Ll~~~~~~-------~~~~~~g~tpl~~a~~~~~~~~~  229 (238)
                         +|++++.++..|+||||+|+..++         .+++++|+++|+++       +.+|..|.||||+|+..++.+++
T Consensus       162 ~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v  241 (260)
T 3jxi_A          162 NGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIF  241 (260)
T ss_dssp             CSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHH
Confidence               999999999999999999999888         79999999999998       78999999999999999998888


Q ss_pred             HHHHH
Q 026440          230 DAAKA  234 (238)
Q Consensus       230 ~~~~~  234 (238)
                      ++|..
T Consensus       242 ~~Ll~  246 (260)
T 3jxi_A          242 QHIIR  246 (260)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77754

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=4.1e-36  Score=225.94  Aligned_cols=187  Identities=26%  Similarity=0.291  Sum_probs=96.7

Q ss_pred             chHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCchHHHHHH--
Q 026440           46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA-DVNLKNDGGRTALHYAA--  122 (238)
Q Consensus        46 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~-~~~~~~~~~~~~l~~a~--  122 (238)
                      .+++|.|+..++.+.++.++..+... .++..|..|+||||+|+..|+.+++++|++.|. +++..+..|.|||++|+  
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~~-~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~  155 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLDY-VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA  155 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHHH-HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhh-cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence            34445555555555555554432211 133444555555555555555555555555554 45555555555555555  


Q ss_pred             ---HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHH
Q 026440          123 ---SKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL  199 (238)
Q Consensus       123 ---~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  199 (238)
                         ..++.+++++|++.|...+..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|
T Consensus       156 ~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~L  235 (276)
T 4hbd_A          156 TLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLL  235 (276)
T ss_dssp             CCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence               33445555555555555554555555555555555555555555555555555555555555555555555555555


Q ss_pred             Hh-cCCCCccCCCCCCchhhccccccchHHHHHHH
Q 026440          200 IR-HGADVDVEDKEGYTVLGRASNDFRPILIDAAK  233 (238)
Q Consensus       200 l~-~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~  233 (238)
                      ++ .|++++.+|..|.||+++|+..++.+++++|.
T Consensus       236 l~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll  270 (276)
T 4hbd_A          236 LAVPSCDISLTDRDGSTALMVALDAGQSEIASMLY  270 (276)
T ss_dssp             HTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            55 45555555555555555555555555544443

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=2.6e-35  Score=210.28  Aligned_cols=164  Identities=29%  Similarity=0.367  Sum_probs=117.5

Q ss_pred             hcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCch
Q 026440           37 SLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRT  116 (238)
Q Consensus        37 ~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  116 (238)
                      ..+.++..|.||||+|+..|+.+++++|++.+.+   ++..+..|.||||+|+..++.+++++|++.|++++..+..|.|
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  103 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDK---LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKT  103 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCC
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc---cccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc
Confidence            3556677777777777777777777777776655   4555666777777777777777777777777777777777777


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHH
Q 026440          117 ALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVA  196 (238)
Q Consensus       117 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  196 (238)
                      |||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+..++.+++
T Consensus       104 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v  183 (192)
T 2rfm_A          104 PLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVI  183 (192)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHhcC
Q 026440          197 LLLIRHG  203 (238)
Q Consensus       197 ~~Ll~~~  203 (238)
                      ++|+++|
T Consensus       184 ~~Ll~~~  190 (192)
T 2rfm_A          184 KIFTEVR  190 (192)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhcc
Confidence            7776653

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=2e-35  Score=207.22  Aligned_cols=170  Identities=26%  Similarity=0.340  Sum_probs=151.1

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHc
Q 026440           45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASK  124 (238)
Q Consensus        45 ~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~  124 (238)
                      +.+|||.|+..|+.+++++|+..+..  .++..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   79 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDN--LVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG   79 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSG--GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcc--cccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHC
Confidence            46899999999999999999986543  3567788999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCC
Q 026440          125 GWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGA  204 (238)
Q Consensus       125 ~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~  204 (238)
                      |+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|+
T Consensus        80 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~  159 (172)
T 3v30_A           80 GYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL  159 (172)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCCch
Q 026440          205 DVDVEDKEGYTV  216 (238)
Q Consensus       205 ~~~~~~~~g~tp  216 (238)
                      ++...+..|.||
T Consensus       160 ~~~~~~~~~~~p  171 (172)
T 3v30_A          160 KLFQSNLVPADP  171 (172)
T ss_dssp             HHSCC-------
T ss_pred             HHhcccCCCCCC
Confidence            999988888887

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=5.2e-35  Score=208.68  Aligned_cols=162  Identities=29%  Similarity=0.346  Sum_probs=156.3

Q ss_pred             cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 026440           74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHR  153 (238)
Q Consensus        74 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~  153 (238)
                      .+.++..|+||||+|+..|+.+++++|++.|.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  107 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMW  107 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence            56678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHH
Q 026440          154 GASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAK  233 (238)
Q Consensus       154 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~  233 (238)
                      |+..++.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|+..++.+++++|.
T Consensus       108 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  187 (192)
T 2rfm_A          108 SIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFT  187 (192)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             HH
Q 026440          234 AM  235 (238)
Q Consensus       234 ~~  235 (238)
                      ..
T Consensus       188 ~~  189 (192)
T 2rfm_A          188 EV  189 (192)
T ss_dssp             HH
T ss_pred             hc
Confidence            64

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=1.1e-35  Score=223.59  Aligned_cols=190  Identities=26%  Similarity=0.360  Sum_probs=178.7

Q ss_pred             ChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcc-cccccccccCCCCcHHHHHH
Q 026440           11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDE-SANVVNAVDEEGWAPIHSAA   89 (238)
Q Consensus        11 ~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~~~~~~t~l~~a~   89 (238)
                      ...++.|+..|+.+.++.+++......++..|..|.||||+|+..|+.+++++|++.+. .   ++..+..|.|||++|+
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~---~~~~~~~g~tpL~~a~  153 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCK---VDKQNRAGYSPIMLTA  153 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCC---TTCCCTTSCCHHHHGG
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCc---CCCCCCCCCCHHHHHH
Confidence            44678899999999999999998777799999999999999999999999999999876 4   6778899999999999


Q ss_pred             -----HcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHH
Q 026440           90 -----SIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCE  164 (238)
Q Consensus        90 -----~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  164 (238)
                           ..++.+++++|++.|...+..+..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.++++
T Consensus       154 ~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~  233 (276)
T 4hbd_A          154 LATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAG  233 (276)
T ss_dssp             GCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence                 668899999999999999888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHh-cCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcC
Q 026440          165 LLIE-EGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHG  203 (238)
Q Consensus       165 ~Ll~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  203 (238)
                      +|++ .|++++.++..|.||||+|+..|+.+++++|++++
T Consensus       234 ~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          234 LLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            9999 89999999999999999999999999999999874

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=2e-34  Score=200.13  Aligned_cols=159  Identities=30%  Similarity=0.367  Sum_probs=144.9

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHH
Q 026440           43 DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAA  122 (238)
Q Consensus        43 ~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~  122 (238)
                      +...+|||.|+..|+.+++++|++.+.+   ++..+..|+||||+|+. ++.+++++|++.|++++.++..|.||||+|+
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~---~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   78 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNVN---VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAA   78 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCCC---TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCCC---ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            3467899999999999999999987766   66778899999999999 9999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCC-CCccccCCCcHHHHHHHhCCHHHHHHHHh
Q 026440          123 SKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE-VDATDKAGQTPLMNAVICYNKEVALLLIR  201 (238)
Q Consensus       123 ~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~-~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  201 (238)
                      ..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++ ++..+..|.||||+|+..++.+++++|++
T Consensus        79 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  158 (162)
T 1ihb_A           79 RAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA  158 (162)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988 58899999999999999999999999999


Q ss_pred             cCCC
Q 026440          202 HGAD  205 (238)
Q Consensus       202 ~~~~  205 (238)
                      +|++
T Consensus       159 ~GAd  162 (162)
T 1ihb_A          159 NGAG  162 (162)
T ss_dssp             TC--
T ss_pred             hCCC
Confidence            9985

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=2.6e-34  Score=200.58  Aligned_cols=159  Identities=28%  Similarity=0.404  Sum_probs=128.0

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHH
Q 026440           44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS  123 (238)
Q Consensus        44 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~  123 (238)
                      .|.||||.|+..|+.+++++|++.+..   ++..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+.
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   78 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV---INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACS   78 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC---cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence            467788888888888888888877655   56667778888888888888888888888888888777788888888888


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcC
Q 026440          124 KGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHG  203 (238)
Q Consensus       124 ~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  203 (238)
                      .|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+..++.+++++|++++
T Consensus        79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (167)
T 3v31_A           79 KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL  158 (167)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888765


Q ss_pred             CC
Q 026440          204 AD  205 (238)
Q Consensus       204 ~~  205 (238)
                      ++
T Consensus       159 ~~  160 (167)
T 3v31_A          159 LK  160 (167)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=7.2e-34  Score=198.73  Aligned_cols=158  Identities=40%  Similarity=0.564  Sum_probs=102.0

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHH
Q 026440           43 DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAA  122 (238)
Q Consensus        43 ~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~  122 (238)
                      ..+.++|+.|+..|+.+++++|++.+.+   ++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   88 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMANGAD---VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAA   88 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            3455666666666666666666665554   4445566666666666666666666666666666666666666666666


Q ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhc
Q 026440          123 SKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRH  202 (238)
Q Consensus       123 ~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  202 (238)
                      ..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+..++.+++++|+++
T Consensus        89 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  168 (169)
T 2y1l_E           89 LFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL  168 (169)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666655


Q ss_pred             C
Q 026440          203 G  203 (238)
Q Consensus       203 ~  203 (238)
                      |
T Consensus       169 G  169 (169)
T 2y1l_E          169 N  169 (169)
T ss_dssp             -
T ss_pred             C
Confidence            4

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=4.9e-34  Score=199.19  Aligned_cols=156  Identities=24%  Similarity=0.346  Sum_probs=151.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCC
Q 026440           80 EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN  159 (238)
Q Consensus        80 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~  159 (238)
                      .|.||||.|+..|+.+++++|++.+.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||.|+..++
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY   81 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHHHH
Q 026440          160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKAM  235 (238)
Q Consensus       160 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~  235 (238)
                      .+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|+..++.++++++..-
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (167)
T 3v31_A           82 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH  157 (167)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999888763

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=5.6e-34  Score=199.28  Aligned_cols=158  Identities=34%  Similarity=0.485  Sum_probs=150.1

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHh
Q 026440           77 VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAS  156 (238)
Q Consensus        77 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~  156 (238)
                      ....+.++|+.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+.
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   89 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL   89 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHHH
Q 026440          157 TGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKA  234 (238)
Q Consensus       157 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~  234 (238)
                      .++.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|+..++.+++++|.+
T Consensus        90 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  167 (169)
T 2y1l_E           90 FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK  167 (169)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999888887764

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-33  Score=194.57  Aligned_cols=149  Identities=31%  Similarity=0.386  Sum_probs=82.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHH
Q 026440           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL  162 (238)
Q Consensus        83 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  162 (238)
                      ++|+.|+..|+.+++++|++.|.+++ .+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.++
T Consensus         4 ~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   82 (153)
T 1awc_B            4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANI   82 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHH
Confidence            34555555555555555555544443 23445555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHH
Q 026440          163 CELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAA  232 (238)
Q Consensus       163 ~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~  232 (238)
                      +++|+++|++++.++..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|+..++.+++++|
T Consensus        83 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           83 VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            5555555555555555555555555555555555555555555555555555555555555555555554

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=5.3e-34  Score=199.95  Aligned_cols=169  Identities=21%  Similarity=0.293  Sum_probs=152.8

Q ss_pred             ChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHH
Q 026440           11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS   90 (238)
Q Consensus        11 ~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~   90 (238)
                      ..+|+.|+..|+.+.+++|++.+ ...++..+..|.||||+|+..|+.+++++|++.+.+   ++..+..|.||||+|+.
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~   78 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKG-DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD---PHILAKERESALSLAST   78 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTC-SGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC---TTCCCTTCCCHHHHHHH
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcC-cccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---chhhcccCCCHHHHHHH
Confidence            45799999999999999999987 455788899999999999999999999999998877   66778899999999999


Q ss_pred             cCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcC
Q 026440           91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEG  170 (238)
Q Consensus        91 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  170 (238)
                      .++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||+++|+..++.+++++|++++
T Consensus        79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (172)
T 3v30_A           79 GGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI  158 (172)
T ss_dssp             TTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccCCCcH
Q 026440          171 AEVDATDKAGQTP  183 (238)
Q Consensus       171 ~~~~~~~~~~~t~  183 (238)
                      +++...+..+.||
T Consensus       159 ~~~~~~~~~~~~p  171 (172)
T 3v30_A          159 LKLFQSNLVPADP  171 (172)
T ss_dssp             HHHSCC-------
T ss_pred             HHHhcccCCCCCC
Confidence            9988888777776

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=100.00  E-value=1e-33  Score=199.72  Aligned_cols=169  Identities=28%  Similarity=0.379  Sum_probs=152.7

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHH
Q 026440           43 DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAA  122 (238)
Q Consensus        43 ~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~  122 (238)
                      .++.++|+.||..|+.+++++|++.+  +..++..+..|+||||+|+..++.+++++|++.|++++..+..|.||||+|+
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   80 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNT--ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA   80 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCT--TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcC--cccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            45788999999999999999999853  2236777889999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhc
Q 026440          123 SKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRH  202 (238)
Q Consensus       123 ~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  202 (238)
                      ..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+..++.+++++|+++
T Consensus        81 ~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~  160 (179)
T 3f6q_A           81 SHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKM  160 (179)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccCCCCC
Q 026440          203 GADVDVEDKEG  213 (238)
Q Consensus       203 ~~~~~~~~~~g  213 (238)
                      |++++..+..+
T Consensus       161 g~~~~~~~~~~  171 (179)
T 3f6q_A          161 GQNLNRIPYKD  171 (179)
T ss_dssp             TCCCSCBCCCC
T ss_pred             hcCcccCCccc
Confidence            99998876544

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=100.00  E-value=8.4e-37  Score=223.45  Aligned_cols=199  Identities=24%  Similarity=0.204  Sum_probs=168.7

Q ss_pred             HHHHHHHHhhh-hcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 026440           26 FKSLSKQQLLK-SLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG  104 (238)
Q Consensus        26 v~~l~~~~~~~-~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  104 (238)
                      ++.|++++... .....+..+.||||.|+..|+.+++++|++.+.+   ++..+..|+||||+|+..|+.+++++|++.|
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g   77 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND---PSQPNEEGITALHNAICGANYSIVDFLITAG   77 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            35666666321 2234456678999999999999999999998877   6678889999999999999999999999999


Q ss_pred             CCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHH--HhhCCHHHHHHHHhcCCCCCccccCCC
Q 026440          105 ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD-KVGCTALHRG--ASTGNSALCELLIEEGAEVDATDKAGQ  181 (238)
Q Consensus       105 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~t~l~~a--~~~~~~~~~~~Ll~~~~~~~~~~~~~~  181 (238)
                      ++++.++..|.||||+|+..|+.+++++|++.|++++..+ ..|.|||++|  +..++.+++++|++.|++++..+..|.
T Consensus        78 a~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~  157 (229)
T 2vge_A           78 ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAV  157 (229)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEE
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCch
Confidence            9999999999999999999999999999999999999986 5899999999  999999999999999999999999999


Q ss_pred             cHHHHHHHhCCHHHHHHHHhcCCC--CccCCCCCCchhhccccccchHHHH
Q 026440          182 TPLMNAVICYNKEVALLLIRHGAD--VDVEDKEGYTVLGRASNDFRPILID  230 (238)
Q Consensus       182 t~l~~a~~~~~~~~~~~Ll~~~~~--~~~~~~~g~tpl~~a~~~~~~~~~~  230 (238)
                      ||++.++...   ..++|++.|++  ++.+|..|+|||++|+..++.++++
T Consensus       158 ~~l~~~~~~~---~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~  205 (229)
T 2vge_A          158 YALWDYSAEF---GDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVP  205 (229)
T ss_dssp             EESSCBCCSS---TTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEE
T ss_pred             HHHHHHhhcc---ccccCccccccccccccCCCcccHHHHHHHcCCcceee
Confidence            9999654443   33677888988  6788999999999999999977654

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-32  Score=189.42  Aligned_cols=151  Identities=34%  Similarity=0.443  Sum_probs=137.0

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHc
Q 026440           45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASK  124 (238)
Q Consensus        45 ~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~  124 (238)
                      ..++|+.|+..|+.+++++|++.+...   + .+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~---~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   77 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPF---T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC---C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCC---C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            457899999999999999999887653   2 467899999999999999999999999999998888999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHH
Q 026440          125 GWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL  199 (238)
Q Consensus       125 ~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  199 (238)
                      |+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+..++.+++++|
T Consensus        78 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           78 GHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999887

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=100.00  E-value=2.1e-33  Score=195.63  Aligned_cols=159  Identities=33%  Similarity=0.489  Sum_probs=75.1

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHH
Q 026440           42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA  121 (238)
Q Consensus        42 ~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a  121 (238)
                      +..+.++||.|+..|+.+++++|++.+.  ...+..+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   82 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQS--VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNA   82 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTT--TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCC--CCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHH
Confidence            3445555566666565555555554221  11333344445555555555555555555555555544444444444444


Q ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHh
Q 026440          122 ASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIR  201 (238)
Q Consensus       122 ~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  201 (238)
                      +..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+. ++.+++++|++
T Consensus        83 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~  161 (165)
T 3twr_A           83 CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRG  161 (165)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHT
T ss_pred             HHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhh
Confidence            44444444444444444444444444444444444444444444444444444444444444444333 44444444444


Q ss_pred             cC
Q 026440          202 HG  203 (238)
Q Consensus       202 ~~  203 (238)
                      +|
T Consensus       162 ~g  163 (165)
T 3twr_A          162 DA  163 (165)
T ss_dssp             C-
T ss_pred             cc
Confidence            33

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=100.00  E-value=6.7e-33  Score=193.04  Aligned_cols=155  Identities=30%  Similarity=0.404  Sum_probs=145.2

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHh
Q 026440           78 DEEGWAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAS  156 (238)
Q Consensus        78 ~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~  156 (238)
                      +..+.+||+.|+..|+.+++++|++. +.+.+..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   84 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS   84 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence            56788999999999999999999984 55666777889999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHH
Q 026440          157 TGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAK  233 (238)
Q Consensus       157 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~  233 (238)
                      .++.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|.. ++.+++++|.
T Consensus        85 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~  160 (165)
T 3twr_A           85 YGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLR  160 (165)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHH
T ss_pred             cCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999887 7878877765

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=4.6e-33  Score=193.26  Aligned_cols=154  Identities=29%  Similarity=0.319  Sum_probs=146.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCC
Q 026440           80 EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN  159 (238)
Q Consensus        80 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~  159 (238)
                      ...+||+.|+..|+.+++++|++.|++++..+..|.||||+|+. |+.+++++|++.|++++..+..|.||||.|+..++
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   82 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   82 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            45689999999999999999999999999999999999999999 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCC-CccCCCCCCchhhccccccchHHHHHHHH
Q 026440          160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGAD-VDVEDKEGYTVLGRASNDFRPILIDAAKA  234 (238)
Q Consensus       160 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~-~~~~~~~g~tpl~~a~~~~~~~~~~~~~~  234 (238)
                      .+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++ ++..|..|.||+++|+..++.+++++|..
T Consensus        83 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  158 (162)
T 1ihb_A           83 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA  158 (162)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998 59999999999999999999888887753

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=100.00  E-value=2.7e-32  Score=192.49  Aligned_cols=156  Identities=31%  Similarity=0.432  Sum_probs=146.7

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhh
Q 026440           79 EEGWAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST  157 (238)
Q Consensus        79 ~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~  157 (238)
                      ..+.++|+.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            3578899999999999999999998 667888899999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHHH
Q 026440          158 GNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKA  234 (238)
Q Consensus       158 ~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~  234 (238)
                      ++.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|...++.++++++..
T Consensus        83 ~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~  159 (179)
T 3f6q_A           83 GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEK  159 (179)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888888765

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=100.00  E-value=4.4e-32  Score=187.14  Aligned_cols=154  Identities=27%  Similarity=0.401  Sum_probs=112.3

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHc
Q 026440           45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASK  124 (238)
Q Consensus        45 ~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~  124 (238)
                      +.||||.|+..|+.+++++|++. . +...+..+..|.||||+ +..|+.+++++|++.|++++.++..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~-~-~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   78 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHR-E-LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT-T-CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHh-h-CcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc
Confidence            45677777777777777777765 2 12255566677777777 777777777777777777777777777777777777


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhc
Q 026440          125 GWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRH  202 (238)
Q Consensus       125 ~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  202 (238)
                      |+.+++++|+++|++++..+..|.||||+|+..++.+++++|++. ++++.++..|.||||+|+..++.+++++|+++
T Consensus        79 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           79 GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            777777777777777777777777777777777777777777777 77777777777777777777777777777654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=100.00  E-value=4.6e-32  Score=187.07  Aligned_cols=152  Identities=29%  Similarity=0.317  Sum_probs=144.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCC
Q 026440           81 GWAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN  159 (238)
Q Consensus        81 ~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~  159 (238)
                      +.+||+.|+..|+.+++++|++. +.+++..+..|.||||+ +..|+.+++++|++.|++++..+..|.||||.|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            45899999999999999999998 34888889999999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHHH
Q 026440          160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKA  234 (238)
Q Consensus       160 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~  234 (238)
                      .+++++|+++|++++.++..|.||||+|+..++.+++++|+++ ++++.+|..|.||+++|+..++.+++++|..
T Consensus        81 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999 9999999999999999999999888887764

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=100.00  E-value=3.3e-33  Score=205.92  Aligned_cols=179  Identities=22%  Similarity=0.214  Sum_probs=126.2

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHH
Q 026440           43 DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAA  122 (238)
Q Consensus        43 ~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~  122 (238)
                      ..|.||||.|+..++.+.++.|++.|.+..   . +..+.|||+.|+..|+.+++++|++.|++++.++..|.||||+|+
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~---~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~   78 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVK---F-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAV   78 (239)
T ss_dssp             --------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcc---c-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            458899999999999999999998887643   2 356789999999999999999999999888888888999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCC-cHHHHH--HHhCCHHHHHHH
Q 026440          123 SKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQ-TPLMNA--VICYNKEVALLL  199 (238)
Q Consensus       123 ~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~-t~l~~a--~~~~~~~~~~~L  199 (238)
                      ..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|+++|++++..+..|. ||+|+|  +..|+.+++++|
T Consensus        79 ~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~L  158 (239)
T 1ycs_B           79 CAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL  158 (239)
T ss_dssp             HHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHH
Confidence            99999999999999999998888999999999999999999999999999988887776 999988  777889999999


Q ss_pred             HhcCCCCccC---------CCCCCchhhccccccc
Q 026440          200 IRHGADVDVE---------DKEGYTVLGRASNDFR  225 (238)
Q Consensus       200 l~~~~~~~~~---------~~~g~tpl~~a~~~~~  225 (238)
                      +++|++++..         +..+.+|.+++.+.+.
T Consensus       159 l~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          159 YGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             HHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            9988887765         4567788887776654

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=2.3e-33  Score=215.91  Aligned_cols=214  Identities=18%  Similarity=0.190  Sum_probs=162.3

Q ss_pred             hhhhccChHHHHHHHcCChHHHHHHHHHHhhhhcCC---------------CCCCCchHHHHHHHcCCHHHHHHHHhhcc
Q 026440            5 IDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSL---------------RNDDDRTLLHVAASCGHPEVVEILLSVDE   69 (238)
Q Consensus         5 ~~~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~---------------~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~   69 (238)
                      ..+..+.+.++     |+.++|+.|++.+.......               ......+.+|.|+..+..+++++|++.+.
T Consensus        47 ~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~  121 (327)
T 1sw6_A           47 KALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQL  121 (327)
T ss_dssp             ECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSCC
T ss_pred             cCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCC
Confidence            33444454444     99999999999884211100               01111233577888888899999998777


Q ss_pred             ccccccc-ccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCC---HHHHHHHHHcC-CCCCCCC
Q 026440           70 SANVVNA-VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGW---LKIVELLISRG-AKINSKD  144 (238)
Q Consensus        70 ~~~~~~~-~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~l~~~~-~~~~~~~  144 (238)
                      +   ++. .+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+   .++++.|++.+ .+++..+
T Consensus       122 d---vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d  198 (327)
T 1sw6_A          122 N---LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED  198 (327)
T ss_dssp             C---SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEEC
T ss_pred             C---cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCC
Confidence            6   666 78999999999999999999999999999999999999999999999988   67778888775 6788899


Q ss_pred             CCCCcHHHHHHh----hCCHHHHHHHHhc--------------------CCCCCccccCCCcHHHHHHHhCCHHHHHHHH
Q 026440          145 KVGCTALHRGAS----TGNSALCELLIEE--------------------GAEVDATDKAGQTPLMNAVICYNKEVALLLI  200 (238)
Q Consensus       145 ~~~~t~l~~a~~----~~~~~~~~~Ll~~--------------------~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll  200 (238)
                      ..|.||||+|+.    .++.+++++|++.                    |++++.++..|.||||.|+.      +++|+
T Consensus       199 ~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll  272 (327)
T 1sw6_A          199 SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWII  272 (327)
T ss_dssp             TTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHH
T ss_pred             CCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHH
Confidence            999999999999    8999999999987                    89999999999999999985      89999


Q ss_pred             hcCCCCccCCCCCCchhhccccccchHHHHHHHH
Q 026440          201 RHGADVDVEDKEGYTVLGRASNDFRPILIDAAKA  234 (238)
Q Consensus       201 ~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~  234 (238)
                      ++  +++.+|..|+||||+|+..++.+++++|..
T Consensus       273 ~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~  304 (327)
T 1sw6_A          273 AN--MLNAQDSNGDTCLNIAARLGNISIVDALLD  304 (327)
T ss_dssp             HH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHH
T ss_pred             Hh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            88  688999999999999999999888777653

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.97  E-value=5.3e-31  Score=181.74  Aligned_cols=145  Identities=26%  Similarity=0.262  Sum_probs=112.3

Q ss_pred             ccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc-HHHH
Q 026440           75 NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCT-ALHR  153 (238)
Q Consensus        75 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t-~l~~  153 (238)
                      ...+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+ .|+.+++++|+++|++++..+..|.| |||+
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD   84 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            344567888899999888899999999888888888888899998885 88899999999999999988888988 9999


Q ss_pred             HHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhcc
Q 026440          154 GASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRA  220 (238)
Q Consensus       154 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a  220 (238)
                      |+..++.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++.++..|.||.+.+
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999887744

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=1e-30  Score=192.61  Aligned_cols=155  Identities=20%  Similarity=0.229  Sum_probs=116.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhC
Q 026440           79 EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG  158 (238)
Q Consensus        79 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~  158 (238)
                      ..|.|||+.|+..++.+.++.|+++|++++.. ..+.|||+.|+..|+.+++++|++.|++++..|..|.||||+|+..|
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g   81 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG   81 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            47899999999999999999999999998864 67899999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCC-chhhcc--ccccchHHHHHHHH
Q 026440          159 NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGY-TVLGRA--SNDFRPILIDAAKA  234 (238)
Q Consensus       159 ~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~-tpl~~a--~~~~~~~~~~~~~~  234 (238)
                      +.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++.++..|. ||+++|  ...++.+++++|..
T Consensus        82 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~  160 (239)
T 1ycs_B           82 HTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  160 (239)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998777 999999  78899998888764

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=1.7e-31  Score=195.32  Aligned_cols=164  Identities=26%  Similarity=0.306  Sum_probs=146.3

Q ss_pred             HHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCC
Q 026440           61 VEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI  140 (238)
Q Consensus        61 ~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~  140 (238)
                      ++.|++.+..+...+..+..+.|||++|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|+++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~   80 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV   80 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            35677777877767777788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccc-cCCCcHHHHH--HHhCCHHHHHHHHhcCCCCccCCCCCCchh
Q 026440          141 NSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD-KAGQTPLMNA--VICYNKEVALLLIRHGADVDVEDKEGYTVL  217 (238)
Q Consensus       141 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a--~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl  217 (238)
                      +..|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|  +..++.+++++|+++|++++..|..|.||+
T Consensus        81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l  160 (229)
T 2vge_A           81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL  160 (229)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEES
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHH
Confidence            9999999999999999999999999999999999986 6999999999  999999999999999999999999999999


Q ss_pred             hcccccc
Q 026440          218 GRASNDF  224 (238)
Q Consensus       218 ~~a~~~~  224 (238)
                      +.+....
T Consensus       161 ~~~~~~~  167 (229)
T 2vge_A          161 WDYSAEF  167 (229)
T ss_dssp             SCBCCSS
T ss_pred             HHHhhcc
Confidence            9665543

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.97  E-value=6e-30  Score=172.41  Aligned_cols=131  Identities=28%  Similarity=0.316  Sum_probs=104.3

Q ss_pred             cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-CCcHHH
Q 026440           74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV-GCTALH  152 (238)
Q Consensus        74 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~-~~t~l~  152 (238)
                      ++..+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+. ++.+++++|+++|++++..+.. |.||||
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~   83 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVH   83 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHH
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHH
Confidence            45566777778888887777888888887777777777777888888877 8888888888888888777777 788888


Q ss_pred             HHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCC
Q 026440          153 RGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGAD  205 (238)
Q Consensus       153 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~  205 (238)
                      +|+..++.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|+|
T Consensus        84 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           84 DAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            88888888888888888888888888888888888888888888888887765

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.97  E-value=1.1e-30  Score=184.83  Aligned_cols=159  Identities=18%  Similarity=0.129  Sum_probs=103.2

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhhccccccccccc-CCCCcHHHHHHHcCCH----HHHHHHHHcCCCCcccCCCCchHHH
Q 026440           45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVD-EEGWAPIHSAASIGNV----TIVEMLLSKGADVNLKNDGGRTALH  119 (238)
Q Consensus        45 ~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~~~t~l~~a~~~~~~----~~~~~Ll~~~~~~~~~~~~~~~~l~  119 (238)
                      +.++|+.|+..|+.+.++.++..+.     +..+ ..|+||||+|+..++.    +++++|+++|++++.++..|.||||
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~-----~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh   80 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY-----EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFF   80 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS-----SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc-----ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence            3456777777777777666665432     2222 4567777777776654    3677777777777777777777777


Q ss_pred             HHHHcCC------HHHHHHHHHcCCCCCCCCCCCC-cHHHHHHhhC-----CHHHHHHHHh-cCCCCCccccCCCcHHHH
Q 026440          120 YAASKGW------LKIVELLISRGAKINSKDKVGC-TALHRGASTG-----NSALCELLIE-EGAEVDATDKAGQTPLMN  186 (238)
Q Consensus       120 ~a~~~~~------~~~~~~l~~~~~~~~~~~~~~~-t~l~~a~~~~-----~~~~~~~Ll~-~~~~~~~~~~~~~t~l~~  186 (238)
                      +|+..++      .+++++|+++|++++..|..|. ||||+|+..+     ..+++++|++ +|++++.+|..|.||||+
T Consensus        81 ~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~  160 (186)
T 3t8k_A           81 PLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEF  160 (186)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHH
T ss_pred             HHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHH
Confidence            7776664      4566777777777777777776 6777776633     2346666776 677777777777777777


Q ss_pred             HHHhCCHHHHHHHHhcCCCCcc
Q 026440          187 AVICYNKEVALLLIRHGADVDV  208 (238)
Q Consensus       187 a~~~~~~~~~~~Ll~~~~~~~~  208 (238)
                      |+..++.+++++|.++....+.
T Consensus       161 A~~~~~~~~v~~L~~~~~~~~~  182 (186)
T 3t8k_A          161 VKRCQKPIALKMMEDYIKKYNL  182 (186)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHcCCHHHHHHHHHHHHHHhc
Confidence            7777777777766665433333

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.97  E-value=2.4e-30  Score=182.96  Aligned_cols=154  Identities=24%  Similarity=0.284  Sum_probs=139.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCchHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 026440           81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYAASKGWL----KIVELLISRGAKINSKDKVGCTALHRGA  155 (238)
Q Consensus        81 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~l~~a~~~~~~----~~~~~l~~~~~~~~~~~~~~~t~l~~a~  155 (238)
                      ++++|+.|+..|+.+.++.++..+.+  ..+ ..|.||||+|+..++.    +++++|++.|++++..+..|.||||+|+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~--~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSS--CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCcc--cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            45789999999999999999988754  334 6799999999999975    5899999999999999999999999999


Q ss_pred             hhCC------HHHHHHHHhcCCCCCccccCCC-cHHHHHHHh-----CCHHHHHHHHh-cCCCCccCCCCCCchhhcccc
Q 026440          156 STGN------SALCELLIEEGAEVDATDKAGQ-TPLMNAVIC-----YNKEVALLLIR-HGADVDVEDKEGYTVLGRASN  222 (238)
Q Consensus       156 ~~~~------~~~~~~Ll~~~~~~~~~~~~~~-t~l~~a~~~-----~~~~~~~~Ll~-~~~~~~~~~~~g~tpl~~a~~  222 (238)
                      ..++      .+++++|+++|++++.+|..|. ||||+|+..     +..+++++|++ +|++++.+|..|.|||++|..
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~  163 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKR  163 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHT
T ss_pred             HcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHH
Confidence            9987      5789999999999999999999 999999983     44679999999 999999999999999999999


Q ss_pred             ccchHHHHHHHHHh
Q 026440          223 DFRPILIDAAKAML  236 (238)
Q Consensus       223 ~~~~~~~~~~~~~~  236 (238)
                      .++.+++++|+..+
T Consensus       164 ~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          164 CQKPIALKMMEDYI  177 (186)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHH
Confidence            99999999988654

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=3.2e-32  Score=211.84  Aligned_cols=156  Identities=17%  Similarity=0.182  Sum_probs=117.8

Q ss_pred             cChHHHHHHHcCChHHHHHHHHHHhhh-hcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHH
Q 026440           10 KDKDLFKAAETGDSSTFKSLSKQQLLK-SLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA   88 (238)
Q Consensus        10 ~~~~l~~a~~~g~~~~v~~l~~~~~~~-~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a   88 (238)
                      ..++||.|+..|+.++|++|++.+.+. .....+..|.||||+|+..|+.+++++|++.|.+....+..+.. .||||+|
T Consensus        92 ~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~A  170 (376)
T 2aja_A           92 SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLA  170 (376)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHH
T ss_pred             cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHH
Confidence            347889999999999999998876311 11234556788999999999999999999887532211222223 8899999


Q ss_pred             HHcCCHHHHHHHHHcCCCCcc--cCCCCchHHHHHH-HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHH
Q 026440           89 ASIGNVTIVEMLLSKGADVNL--KNDGGRTALHYAA-SKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL  165 (238)
Q Consensus        89 ~~~~~~~~~~~Ll~~~~~~~~--~~~~~~~~l~~a~-~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  165 (238)
                      +..|+.+++++|+++|++++.  .+..|.||||+|+ ..|+.+++++|++.|.       .+.||++.|+..|+.+++++
T Consensus       171 a~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~l  243 (376)
T 2aja_A          171 AENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKYVNPF  243 (376)
T ss_dssp             HHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHHHH
T ss_pred             HHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHHHHHH
Confidence            999999999999999888776  6777889999999 8999999999988663       27788888888888888888


Q ss_pred             HHhcCCCC
Q 026440          166 LIEEGAEV  173 (238)
Q Consensus       166 Ll~~~~~~  173 (238)
                      |+++|+++
T Consensus       244 L~~~ga~~  251 (376)
T 2aja_A          244 IARHVNRL  251 (376)
T ss_dssp             HHHHHHHH
T ss_pred             HHhcCccc
Confidence            88766543

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.96  E-value=2.1e-28  Score=162.53  Aligned_cols=126  Identities=47%  Similarity=0.696  Sum_probs=106.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCC
Q 026440           80 EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN  159 (238)
Q Consensus        80 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~  159 (238)
                      +|+|||++|+..++.+++++|++.|.+++..+..|.|||++|+..++.+++++|++.|++++..+..|.||||+|+..++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            36788888888888888888888888887777788888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCC
Q 026440          160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGAD  205 (238)
Q Consensus       160 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~  205 (238)
                      .+++++|+++|++++.++..|.||+++|+..++.+++++|+++|++
T Consensus        81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            8888888888888888888888888888888888888888888875

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=1.9e-29  Score=173.96  Aligned_cols=145  Identities=23%  Similarity=0.332  Sum_probs=118.3

Q ss_pred             CCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCch-H
Q 026440           39 SLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRT-A  117 (238)
Q Consensus        39 ~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-~  117 (238)
                      ...+..|.||||+|+..|+.+++++|++.+.+   ++..+..|+||||+|+ .++.+++++|++.|++++.++..|.| |
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttp   81 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGAN---PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRP   81 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCC---TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence            34567899999999999999999999998776   6777889999999995 89999999999999999999999999 9


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHH
Q 026440          118 LHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA  187 (238)
Q Consensus       118 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a  187 (238)
                      ||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||.+.+
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           82 VHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999987744

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=3.7e-32  Score=211.47  Aligned_cols=196  Identities=16%  Similarity=0.169  Sum_probs=160.1

Q ss_pred             HHHHHHH-cCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHc
Q 026440           13 DLFKAAE-TGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASI   91 (238)
Q Consensus        13 ~l~~a~~-~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~   91 (238)
                      .+++|.. .++.+.++++++.+         .++.||||+|+..|+.+++++|++.+.........+..+.||||+|+..
T Consensus        68 ~~~~a~~~~~~~~~~~~l~~~g---------~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~  138 (376)
T 2aja_A           68 CLYYAHYNRNAKQLWSDAHKKG---------IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN  138 (376)
T ss_dssp             HHHHHHTTTTCTTHHHHHHHHT---------CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCHHHHHHHHHcC---------CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHc
Confidence            4556655 57788888887665         3356999999999999999999998764332334455778999999999


Q ss_pred             CCHHHHHHHHHcCCCC---cccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCCCCcHHHHHH-hhCCHHHHHH
Q 026440           92 GNVTIVEMLLSKGADV---NLKNDGGRTALHYAASKGWLKIVELLISRGAKINS--KDKVGCTALHRGA-STGNSALCEL  165 (238)
Q Consensus        92 ~~~~~~~~Ll~~~~~~---~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~~~~~t~l~~a~-~~~~~~~~~~  165 (238)
                      |+.+++++|+++|+++   +..+.. .||||+|+..|+.+++++|+++|++++.  .+..|.||||+|+ ..|+.+++++
T Consensus       139 G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~  217 (376)
T 2aja_A          139 GHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINF  217 (376)
T ss_dssp             TCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHH
T ss_pred             CCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHH
Confidence            9999999999999753   222222 8999999999999999999999999876  7888999999999 9999999999


Q ss_pred             HHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHH
Q 026440          166 LIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILI  229 (238)
Q Consensus       166 Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~  229 (238)
                      |++.|.       .|.||+++|+..|+.+++++|+++|++++..+    ++++.|..+++.+++
T Consensus       218 Ll~~ga-------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~----~~l~~A~~~g~~~vv  270 (376)
T 2aja_A          218 LLDCPV-------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH----DAFKLSNPDGVFDLV  270 (376)
T ss_dssp             HTTSHH-------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHH----TTTTTTSSSSCCCCS
T ss_pred             HHhCCC-------ccchHHHHHHHCCCHHHHHHHHhcCccccccc----HHHHHHHHCCChhhh
Confidence            998763       37899999999999999999999999887654    477888877776643

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=4.1e-29  Score=168.28  Aligned_cols=130  Identities=24%  Similarity=0.282  Sum_probs=123.7

Q ss_pred             CCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccC-CCc
Q 026440          104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKA-GQT  182 (238)
Q Consensus       104 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-~~t  182 (238)
                      +++++..+..|.|||+.|+..|+.+++++|++.|++++..+..|.||||+|+. ++.+++++|+++|++++.++.. |.|
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t   80 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR   80 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence            45677888899999999999999999999999999999999999999999999 9999999999999999999999 999


Q ss_pred             HHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHHH
Q 026440          183 PLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKA  234 (238)
Q Consensus       183 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~  234 (238)
                      |||+|+..++.+++++|+++|++++.+|..|.||+++|+..++.+++++|..
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~  132 (136)
T 1d9s_A           81 PVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHA  132 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999888877653

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.96  E-value=7.6e-29  Score=167.22  Aligned_cols=129  Identities=29%  Similarity=0.392  Sum_probs=114.1

Q ss_pred             CCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcH
Q 026440          104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTP  183 (238)
Q Consensus       104 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~  183 (238)
                      |+++ .++..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~   79 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP   79 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence            4455 567788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHH
Q 026440          184 LMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAK  233 (238)
Q Consensus       184 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~  233 (238)
                      ||+|+..++.+++++|+++|++++.+|..|.||+++|...+..++++.++
T Consensus        80 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~  129 (137)
T 3c5r_A           80 LHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPE  129 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcc
Confidence            99999999999999999999999999999999999999888877766554

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.96  E-value=3.9e-28  Score=163.48  Aligned_cols=125  Identities=35%  Similarity=0.500  Sum_probs=78.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhC
Q 026440           79 EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG  158 (238)
Q Consensus        79 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~  158 (238)
                      ..+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..+
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~   91 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG   91 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence            34556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcC
Q 026440          159 NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHG  203 (238)
Q Consensus       159 ~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  203 (238)
                      +.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|
T Consensus        92 ~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           92 HLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            666666666666666666666666666666666666666666554

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.95  E-value=3.3e-27  Score=156.73  Aligned_cols=126  Identities=48%  Similarity=0.736  Sum_probs=115.1

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHH
Q 026440           44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS  123 (238)
Q Consensus        44 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~  123 (238)
                      +|.||||.|+..|+.+++++|++.+.+   ++..+..|.|||++|+..++.+++++|++.|++++.++..|.|||++|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~   77 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR   77 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCC---CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHH
Confidence            478999999999999999999988766   56677889999999999999999999999999999888899999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCC
Q 026440          124 KGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE  172 (238)
Q Consensus       124 ~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~  172 (238)
                      .++.+++++|+++|++++..+..|.||+++|+..++.+++++|+++|++
T Consensus        78 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           78 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             cChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999998875

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.95  E-value=1.4e-27  Score=160.70  Aligned_cols=123  Identities=33%  Similarity=0.424  Sum_probs=118.2

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhC
Q 026440          112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICY  191 (238)
Q Consensus       112 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~  191 (238)
                      ..+.|||+.|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..+
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~   91 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG   91 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHHH
Q 026440          192 NKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKA  234 (238)
Q Consensus       192 ~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~  234 (238)
                      +.+++++|+++|++++.+|..|.||+++|+..++.+++++|..
T Consensus        92 ~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~  134 (136)
T 2jab_A           92 HLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK  134 (136)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999888887754

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.95  E-value=3.5e-27  Score=156.05  Aligned_cols=118  Identities=28%  Similarity=0.380  Sum_probs=107.1

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHh
Q 026440          111 NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVIC  190 (238)
Q Consensus       111 ~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~  190 (238)
                      +..+.|||+.|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHH
Q 026440          191 YNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPIL  228 (238)
Q Consensus       191 ~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~  228 (238)
                      ++.+++++|+++|++++.+|..|.||+++|...+..++
T Consensus        84 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~l  121 (123)
T 3aaa_C           84 GHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL  121 (123)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHHH
Confidence            99999999999999999999999999999966554443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.94  E-value=2.4e-26  Score=174.40  Aligned_cols=140  Identities=24%  Similarity=0.189  Sum_probs=125.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcc------cCCCCchHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 026440           81 GWAPIHSAASIGNVTIVEMLLSKGADVNL------KNDGGRTALHYAASK---GWLKIVELLISRGAKINSKDKVGCTAL  151 (238)
Q Consensus        81 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~------~~~~~~~~l~~a~~~---~~~~~~~~l~~~~~~~~~~~~~~~t~l  151 (238)
                      ..++|+.|+..++.+.++.|++.|++++.      .+..|.||||+|+..   ++.+++++|+++|++++..|..|.|||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            45679999999999999999999999887      578899999999997   899999999999999999999999999


Q ss_pred             HHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccch
Q 026440          152 HRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRP  226 (238)
Q Consensus       152 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~  226 (238)
                      |+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|++      .|.||||+|+..++.
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            999999999999999999999999999999999999999999999999999886      488999999998864

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.94  E-value=2.7e-27  Score=159.57  Aligned_cols=128  Identities=31%  Similarity=0.423  Sum_probs=102.8

Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 026440           76 AVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGA  155 (238)
Q Consensus        76 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~  155 (238)
                      .++..|+||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~   84 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA   84 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence            34667888888888888888888888888888877888888888888888888888888888888888888888888888


Q ss_pred             hhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcC
Q 026440          156 STGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHG  203 (238)
Q Consensus       156 ~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  203 (238)
                      ..++.+++++|+++|++++.++..|.||+++|+..+..+++++|.+.+
T Consensus        85 ~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           85 KNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence            888888888888888888888888888888888877777777776554

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.94  E-value=8e-27  Score=164.92  Aligned_cols=109  Identities=35%  Similarity=0.454  Sum_probs=58.1

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCchHHHHHH
Q 026440           44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYAA  122 (238)
Q Consensus        44 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~l~~a~  122 (238)
                      .|.||||.|+..|+.+++++|++ +.+   ++..+..|+||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~---~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~  118 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE-DRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  118 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT-TSC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-cCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            44555555555555555555554 333   34444555555555555555555555555555555444 44555555555


Q ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHh
Q 026440          123 SKGWLKIVELLISRGAKINSKDKVGCTALHRGAS  156 (238)
Q Consensus       123 ~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~  156 (238)
                      ..|+.+++++|+++|++++..|..|.||+++|+.
T Consensus       119 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~  152 (183)
T 3deo_A          119 GYVRPEVVEALVELGADIEVEDERGLTALELARE  152 (183)
T ss_dssp             HTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHH
T ss_pred             hcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHH
Confidence            5555555555555555555555555555555543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.94  E-value=4e-27  Score=171.55  Aligned_cols=138  Identities=28%  Similarity=0.340  Sum_probs=112.6

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHH
Q 026440           77 VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR-GAKINSKDKVGCTALHRGA  155 (238)
Q Consensus        77 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~~t~l~~a~  155 (238)
                      .+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++. |++++..+..|.||||+|+
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~  148 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA  148 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence            345678999999999999999999999999998899999999999999999999999998 9999999999999999999


Q ss_pred             hhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCC
Q 026440          156 STGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGY  214 (238)
Q Consensus       156 ~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~  214 (238)
                      ..|+.+++++|+++|++++.++..|.|||++|+..+..++++.|++.|++....+.+|+
T Consensus       149 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~~  207 (222)
T 3ehr_A          149 WKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDY  207 (222)
T ss_dssp             HHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             HcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhhh
Confidence            99999999999999999999999999999999999999999999999999888776554

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.94  E-value=1.8e-26  Score=170.35  Aligned_cols=142  Identities=29%  Similarity=0.330  Sum_probs=128.1

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCchHHHHH
Q 026440           43 DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYA  121 (238)
Q Consensus        43 ~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~l~~a  121 (238)
                      ..|.||||+|+..|+.+++++|++ +.+   ++..+..|+||||+|+..|+.+++++|+++|++++.++ ..|.||||+|
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A  118 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA  118 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCC---TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCC---CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence            468899999999999999999998 655   67788899999999999999999999999999999888 7899999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHh
Q 026440          122 ASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIR  201 (238)
Q Consensus       122 ~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  201 (238)
                      +..|+.+++++|+++|++++..+..|.||+|+|+..+.                 ...+.|||++|+..|+.+++++|++
T Consensus       119 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~~iv~~L~~  181 (244)
T 3ui2_A          119 AGYVRPEVVEALVELGADIEVEDERGLTALELAREILK-----------------TTPKGNPMQFGRRIGLEKVINVLEG  181 (244)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChHHHHHHHHH
Confidence            99999999999999999999999999999999985221                 2457899999999999999999998


Q ss_pred             cCCC
Q 026440          202 HGAD  205 (238)
Q Consensus       202 ~~~~  205 (238)
                      ++++
T Consensus       182 ~~~~  185 (244)
T 3ui2_A          182 QVFE  185 (244)
T ss_dssp             HHEE
T ss_pred             hccc
Confidence            6443

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.94  E-value=4.9e-26  Score=160.90  Aligned_cols=139  Identities=28%  Similarity=0.300  Sum_probs=125.7

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHh
Q 026440           78 DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD-KVGCTALHRGAS  156 (238)
Q Consensus        78 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~t~l~~a~~  156 (238)
                      +..|.||||.|+..|+.+++++|++ |.+++.++..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+.
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            4578899999999999999999999 99999999999999999999999999999999999999888 789999999999


Q ss_pred             hCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHHH
Q 026440          157 TGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKA  234 (238)
Q Consensus       157 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~  234 (238)
                      .++.+++++|+++|++++.++..|.||||+|+..++.                 ..+.+|+++|...++.+++++|+.
T Consensus       120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i~~~L~~  180 (183)
T 3deo_A          120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKVINVLEG  180 (183)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHHHHHHHHH
Confidence            9999999999999999999999999999999875443                 235789999999999999888875

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.94  E-value=2.6e-26  Score=169.53  Aligned_cols=139  Identities=28%  Similarity=0.300  Sum_probs=128.9

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHh
Q 026440           78 DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD-KVGCTALHRGAS  156 (238)
Q Consensus        78 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~t~l~~a~~  156 (238)
                      +..|.||||+|+..|+.+++++|++ |.+++.++..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+.
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence            3578899999999999999999999 99999999999999999999999999999999999999888 779999999999


Q ss_pred             hCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHHH
Q 026440          157 TGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKA  234 (238)
Q Consensus       157 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~  234 (238)
                      .|+.+++++|+++|++++.++..|.||||+|+..+.                 ...+.||+++|...++.++++++..
T Consensus       121 ~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~~iv~~L~~  181 (244)
T 3ui2_A          121 YVRPEVVEALVELGADIEVEDERGLTALELAREILK-----------------TTPKGNPMQFGRRIGLEKVINVLEG  181 (244)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChHHHHHHHHH
Confidence            999999999999999999999999999999986322                 2457899999999999999998875

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.93  E-value=1.2e-25  Score=170.59  Aligned_cols=143  Identities=20%  Similarity=0.186  Sum_probs=122.9

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhhcccccccc---cccCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCcccCCCCchH
Q 026440           44 DDRTLLHVAASCGHPEVVEILLSVDESANVVN---AVDEEGWAPIHSAASI---GNVTIVEMLLSKGADVNLKNDGGRTA  117 (238)
Q Consensus        44 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~---~~~~~~~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~  117 (238)
                      ...++|+.|+..|+.+.++.|+..+.+.....   ..+..|.||||+|+..   ++.+++++|+++|++++.++..|.||
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~Tp  229 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA  229 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCH
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCH
Confidence            34578999999999999999998877633210   0578899999999997   89999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCC
Q 026440          118 LHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYN  192 (238)
Q Consensus       118 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~  192 (238)
                      ||+|+..|+.+++++|+++|++++..|..|.|||++|+..++.+++++|+++|++      .|.||||+|+..|.
T Consensus       230 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC-------
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCC
Confidence            9999999999999999999999999999999999999999999999999998876      47899999998765

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.93  E-value=8.4e-26  Score=149.39  Aligned_cols=110  Identities=33%  Similarity=0.432  Sum_probs=84.1

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhC
Q 026440           79 EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG  158 (238)
Q Consensus        79 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~  158 (238)
                      ..+.|||++|+..|+.+++++|++.|.+++..+..|.||||+|+..++.+++++|++.|++++..|..|.||||+|+..+
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~   84 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG   84 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence            45667777777777777777777777777777777777777777777777777777777777777777778888888777


Q ss_pred             CHHHHHHHHhcCCCCCccccCCCcHHHHHH
Q 026440          159 NSALCELLIEEGAEVDATDKAGQTPLMNAV  188 (238)
Q Consensus       159 ~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~  188 (238)
                      +.+++++|+++|++++.++..|.||+|+|.
T Consensus        85 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           85 HVSCVKLLLSKGADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence            888888888777777777777888888773

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.93  E-value=1.5e-25  Score=163.19  Aligned_cols=123  Identities=25%  Similarity=0.333  Sum_probs=115.0

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhc-CCCCCccccCCCcHHHHHHH
Q 026440          111 NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEE-GAEVDATDKAGQTPLMNAVI  189 (238)
Q Consensus       111 ~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~~a~~  189 (238)
                      +..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|++. |++++.++..|.||||+|+.
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW  149 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             hCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHH
Q 026440          190 CYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAK  233 (238)
Q Consensus       190 ~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~  233 (238)
                      .|+.+++++|+++|++++.+|.+|.||+++|+..++.++++.+.
T Consensus       150 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~  193 (222)
T 3ehr_A          150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQ  193 (222)
T ss_dssp             HTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC---
T ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHh
Confidence            99999999999999999999999999999999988877666543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.92  E-value=1.9e-24  Score=162.31  Aligned_cols=124  Identities=23%  Similarity=0.307  Sum_probs=98.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCc------ccCCCCchHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 026440           82 WAPIHSAASIGNVTIVEMLLSKGADVN------LKNDGGRTALHYAASK---GWLKIVELLISRGAKINSKDKVGCTALH  152 (238)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~------~~~~~~~~~l~~a~~~---~~~~~~~~l~~~~~~~~~~~~~~~t~l~  152 (238)
                      .++|+.|+..++.+.++.+++.|.+++      ..+..|.||||+|+..   ++.+++++|+++|++++..|..|.||||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh  210 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHH
Confidence            357788888888888888888877743      3356778888888887   7788888888888888888888888888


Q ss_pred             HHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCC
Q 026440          153 RGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGAD  205 (238)
Q Consensus       153 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~  205 (238)
                      +|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|++
T Consensus       211 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          211 YCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            88888888888888888888888888888888888888888888888887764

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.91  E-value=8.4e-24  Score=158.73  Aligned_cols=188  Identities=15%  Similarity=0.124  Sum_probs=139.8

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCchHHH
Q 026440           41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA-DVNLKNDGGRTALH  119 (238)
Q Consensus        41 ~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~-~~~~~~~~~~~~l~  119 (238)
                      .|..+.+.++.+...|+....+++...-..+. ...  ....++.   ......-..+++..... ..........++|+
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~-~~k--P~~~s~~---~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~  135 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSED-PVK--PNPGSDM---IARKDYITAKYMERRYARKKHADTAAKLHSLC  135 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSS-CCS--CCTTCCH---HHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhh-cCC--CCCCCCH---HHHHHHHHHHHHHhhcccccccccchhhhhhh
Confidence            45667788999988888877777653221110 000  0111111   11111111222222211 11111123457899


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCC------CCCCCCCcHHHHHHhh---CCHHHHHHHHhcCCCCCccccCCCcHHHHHHHh
Q 026440          120 YAASKGWLKIVELLISRGAKIN------SKDKVGCTALHRGAST---GNSALCELLIEEGAEVDATDKAGQTPLMNAVIC  190 (238)
Q Consensus       120 ~a~~~~~~~~~~~l~~~~~~~~------~~~~~~~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~  190 (238)
                      .|+..|+.+.+..+++.|.+++      ..+..|.||||+|+..   ++.+++++|+++|++++.+|..|.||||+|+..
T Consensus       136 ~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~  215 (278)
T 1dcq_A          136 EAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLT  215 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHT
T ss_pred             hHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHc
Confidence            9999999999999999999844      4578899999999999   899999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHHH
Q 026440          191 YNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKA  234 (238)
Q Consensus       191 ~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~  234 (238)
                      |+.+++++|+++|++++.+|..|.||||+|+..++.+++++|..
T Consensus       216 g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~  259 (278)
T 1dcq_A          216 DNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ  259 (278)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999999999999999999998888765

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.91  E-value=8.2e-24  Score=164.05  Aligned_cols=144  Identities=27%  Similarity=0.330  Sum_probs=116.7

Q ss_pred             CCCcHHHHHHHc-CCHHHHHHHHHcCCCCcccC--CCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHh
Q 026440           80 EGWAPIHSAASI-GNVTIVEMLLSKGADVNLKN--DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAS  156 (238)
Q Consensus        80 ~~~t~l~~a~~~-~~~~~~~~Ll~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~  156 (238)
                      .+.++|+.|+.. ++.+++++|++.|++++..+  ..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~  277 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI  277 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            445799999999 99999999999999999887  789999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcC---CCCccCCCCCCchhhccccc
Q 026440          157 TGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHG---ADVDVEDKEGYTVLGRASND  223 (238)
Q Consensus       157 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~---~~~~~~~~~g~tpl~~a~~~  223 (238)
                      .++.+++++|+++|++++..|..|.||||+|+..++.+++++|++.+   .+....+..+.|+++++...
T Consensus       278 ~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          278 LGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             cCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999865   44445566778888876554

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.91  E-value=2.2e-23  Score=130.80  Aligned_cols=92  Identities=48%  Similarity=0.676  Sum_probs=74.5

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCH
Q 026440          114 GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNK  193 (238)
Q Consensus       114 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~  193 (238)
                      |.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..++.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~   81 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            66788888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHhcCCC
Q 026440          194 EVALLLIRHGAD  205 (238)
Q Consensus       194 ~~~~~Ll~~~~~  205 (238)
                      +++++|+++|++
T Consensus        82 ~~~~~Ll~~ga~   93 (93)
T 1n0q_A           82 EVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCC
Confidence            888888888764

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.90  E-value=5.2e-24  Score=139.06  Aligned_cols=108  Identities=35%  Similarity=0.475  Sum_probs=94.5

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHH
Q 026440          110 KNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVI  189 (238)
Q Consensus       110 ~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~  189 (238)
                      +|..|.||||+|+..|+.+++++|++.|++++..+..|.||||.|+..++.+++++|+++|++++.++..|.||||+|+.
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~   84 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK   84 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            56678888888888888888998888888888888889999999999999999999999999999888899999999999


Q ss_pred             hCCHHHHHHHHhcCCCCccCCCCCCchh
Q 026440          190 CYNKEVALLLIRHGADVDVEDKEGYTVL  217 (238)
Q Consensus       190 ~~~~~~~~~Ll~~~~~~~~~~~~g~tpl  217 (238)
                      .++.+++++|+++|++++.++..|.+|-
T Consensus        85 ~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           85 NGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             CCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            9999999999999999999998888874

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.90  E-value=4.7e-23  Score=159.83  Aligned_cols=146  Identities=25%  Similarity=0.282  Sum_probs=117.0

Q ss_pred             CCCchHHHHHHHc-CCHHHHHHHHhhccccccccccc--CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHH
Q 026440           43 DDDRTLLHVAASC-GHPEVVEILLSVDESANVVNAVD--EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALH  119 (238)
Q Consensus        43 ~~~~t~L~~A~~~-~~~~~~~~Ll~~~~~~~~~~~~~--~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~  119 (238)
                      ..+.++||.|+.. |+.++++.|+..|.+   ++..+  ..|.||||+|+..++.+++++|+++|++++..+..|.||||
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gad---vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh  273 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGAD---VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLH  273 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCC---TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCC---CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            3456899999999 999999999998887   45555  78999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcC---CCCCccccCCCcHHHHHHHhC
Q 026440          120 YAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEG---AEVDATDKAGQTPLMNAVICY  191 (238)
Q Consensus       120 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~---~~~~~~~~~~~t~l~~a~~~~  191 (238)
                      +|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|+..+   .+....+..+.|++..+....
T Consensus       274 ~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          274 HATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred             HHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999875   333344556778887766543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.89  E-value=2.1e-22  Score=126.23  Aligned_cols=91  Identities=48%  Similarity=0.772  Sum_probs=54.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCH
Q 026440           81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS  160 (238)
Q Consensus        81 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~  160 (238)
                      |+||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++..|..|.||+|+|+..++.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~   81 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            45566666666666666666666555555555566666666666666666666666666655555566666666666666


Q ss_pred             HHHHHHHhcCC
Q 026440          161 ALCELLIEEGA  171 (238)
Q Consensus       161 ~~~~~Ll~~~~  171 (238)
                      +++++|+++|+
T Consensus        82 ~~~~~Ll~~ga   92 (93)
T 1n0q_A           82 EVVKLLLEAGA   92 (93)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHcCC
Confidence            66666665554

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.88  E-value=8.3e-23  Score=133.30  Aligned_cols=107  Identities=38%  Similarity=0.585  Sum_probs=66.9

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHh
Q 026440           77 VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAS  156 (238)
Q Consensus        77 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~  156 (238)
                      ++..|+||||+|+..++.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++..+..|.|||++|+.
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~   84 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK   84 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            34556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             hCCHHHHHHHHhcCCCCCccccCCCcH
Q 026440          157 TGNSALCELLIEEGAEVDATDKAGQTP  183 (238)
Q Consensus       157 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~  183 (238)
                      .++.+++++|+++|++++..+..|.+|
T Consensus        85 ~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           85 NGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             TTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             CCCHHHHHHHHHcCCCCCcCCcccccc
Confidence            666666666666666666666655554

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.84  E-value=6.4e-21  Score=123.24  Aligned_cols=90  Identities=31%  Similarity=0.332  Sum_probs=57.4

Q ss_pred             CCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhcccc
Q 026440          143 KDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASN  222 (238)
Q Consensus       143 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~  222 (238)
                      .+..+.|+||.|+..++.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|+.
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~   99 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID   99 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHH
Confidence            34455666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             ccchHHHHHH
Q 026440          223 DFRPILIDAA  232 (238)
Q Consensus       223 ~~~~~~~~~~  232 (238)
                      .++.+++++|
T Consensus       100 ~~~~~~~~~L  109 (110)
T 2zgd_A          100 NGNEDLAEIL  109 (110)
T ss_dssp             HTCHHHHHHH
T ss_pred             cCCHHHHHHh
Confidence            6666666554

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.82  E-value=1.9e-19  Score=116.30  Aligned_cols=90  Identities=34%  Similarity=0.434  Sum_probs=69.5

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHH
Q 026440          110 KNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVI  189 (238)
Q Consensus       110 ~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~  189 (238)
                      .+..|.|+||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+.
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~   99 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID   99 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHH
Confidence            34567777777777777777777777777777777777888888888888888888888888877777778888888888


Q ss_pred             hCCHHHHHHH
Q 026440          190 CYNKEVALLL  199 (238)
Q Consensus       190 ~~~~~~~~~L  199 (238)
                      .++.+++++|
T Consensus       100 ~~~~~~~~~L  109 (110)
T 2zgd_A          100 NGNEDLAEIL  109 (110)
T ss_dssp             HTCHHHHHHH
T ss_pred             cCCHHHHHHh
Confidence            8888877765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	238
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-40
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-35
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-35
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-33
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-33
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-33
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-36
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-32
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-28
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-25
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-23
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-18
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-27
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-22
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-15
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-25
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-21
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-19
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-15
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-24
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-19
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	9e-13
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-12
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-24
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-22
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-19
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-19
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-22
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-18
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-19
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	9e-18
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-19
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-18
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-18
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-18
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-16
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-19
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-15
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-13
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-12
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	4e-17
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-12
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-16
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-13
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-06
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	3e-13
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-10
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	3e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-12
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	9e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.004
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-12
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-12
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-11
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	5e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.001
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-08
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	4e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	4e-05
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	6e-05

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  141 bits (356), Expect = 1e-40
 Identities = 61/204 (29%), Positives = 81/204 (39%), Gaps = 36/204 (17%)

Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LHVA+  GH  +V+ LL     A+  N  + +   P+H AA  G+  + + LL   A 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQ--RGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNKAK 58

Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISR------------------------------ 136
           VN K    +T LH AA  G   +V+LL+                                
Sbjct: 59  VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 118

Query: 137 ---GAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNK 193
               A      K G T LH  A  G   + ELL+E  A  +A  K G TPL  AV   N 
Sbjct: 119 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 178

Query: 194 EVALLLIRHGADVDVEDKEGYTVL 217
           ++  LL+  G         GYT L
Sbjct: 179 DIVKLLLPRGGSPHSPAWNGYTPL 202

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (319), Expect = 3e-35
 Identities = 69/241 (28%), Positives = 99/241 (41%), Gaps = 38/241 (15%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV 73
           L  A+  G     K+L ++    S ++ N    T LH+AA  GH EV + LL     A V
Sbjct: 4   LHVASFMGHLPIVKNLLQRGA--SPNVSNVKVETPLHMAARAGHTEVAKYLL--QNKAKV 59

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSK------------------------------ 103
            NA  ++   P+H AA IG+  +V++LL                                
Sbjct: 60  -NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 118

Query: 104 ---GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
               A        G T LH AA  G +++ ELL+ R A  N+  K G T LH      N 
Sbjct: 119 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 178

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRA 220
            + +LL+  G    +    G TPL  A      EVA  L+++G   + E  +G T L  A
Sbjct: 179 DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLA 238

Query: 221 S 221
           +
Sbjct: 239 A 239

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (317), Expect = 6e-35
 Identities = 49/171 (28%), Positives = 70/171 (40%), Gaps = 33/171 (19%)

Query: 84  PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
           P+H A+ +G++ IV+ LL +GA  N+ N    T LH AA  G  ++ + L+   AK+N+K
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 62

Query: 144 DKVGCTALHRGASTGNSALCELLIEE---------------------------------G 170
            K   T LH  A  G++ + +LL+E                                   
Sbjct: 63  AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 122

Query: 171 AEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
           A      K G TPL  A       VA LL+   A  +   K G T L  A 
Sbjct: 123 ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAV 173

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (305), Expect = 3e-33
 Identities = 65/246 (26%), Positives = 100/246 (40%), Gaps = 36/246 (14%)

Query: 6   DQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVV 61
              + +      L  AA  G +   K L + +    ++ +  DD+T LH AA  GH  +V
Sbjct: 25  SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA--KVNAKAKDDQTPLHCAARIGHTNMV 82

Query: 62  EILLS------------------------------VDESANVVNAVDEEGWAPIHSAASI 91
           ++LL                               + E       + ++G+ P+H AA  
Sbjct: 83  KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKY 142

Query: 92  GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTAL 151
           G V + E+LL + A  N     G T LH A     L IV+LL+ RG   +S    G T L
Sbjct: 143 GKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPL 202

Query: 152 HRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDK 211
           H  A      +   L++ G   +A    G TPL  A    + E+  LL+   A+ ++ +K
Sbjct: 203 HIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK 262

Query: 212 EGYTVL 217
            G T L
Sbjct: 263 SGLTPL 268

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (304), Expect = 4e-33
 Identities = 66/225 (29%), Positives = 104/225 (46%), Gaps = 9/225 (4%)

Query: 1   MDMDIDQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG 56
           ++ D       K+    L  A    +    K L  +    S      +  T LH+AA   
Sbjct: 152 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRG--GSPHSPAWNGYTPLHIAAKQN 209

Query: 57  HPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRT 116
             EV   LL         NA   +G  P+H AA  G+  +V +LLSK A+ NL N  G T
Sbjct: 210 QVEVARSLLQYG---GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLT 266

Query: 117 ALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDAT 176
            LH  A +G + + ++LI  G  +++  ++G T LH  +  GN  L + L++  A+V+A 
Sbjct: 267 PLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK 326

Query: 177 DKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
            K G +PL  A    + ++  LL+++GA  +    +G T L  A 
Sbjct: 327 TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAK 371

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 9e-33
 Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 6/178 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           +    T LH+AA  GH E+V +   +       N  ++ G  P+H  A  G+V + ++L+
Sbjct: 228 SVQGVTPLHLAAQEGHAEMVAL---LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 284

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
             G  V+     G T LH A+  G +K+V+ L+   A +N+K K+G + LH+ A  G++ 
Sbjct: 285 KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD 344

Query: 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL---IRHGADVDVEDKEGYTV 216
           +  LL++ GA  +     G TPL  A       V  +L       + V V DK   + 
Sbjct: 345 IVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSF 402

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 8e-05
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 6/85 (7%)

Query: 1   MDMDIDQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG 56
           +    D   K K     L +AA+ G +     L K     S +  + D  T L +A   G
Sbjct: 317 LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA--SPNEVSSDGTTPLAIAKRLG 374

Query: 57  HPEVVEILLSVDESANVVNAVDEEG 81
           +  V ++L  V +  + V   D+  
Sbjct: 375 YISVTDVLKVVTDETSFVLVSDKHR 399

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (316), Expect = 2e-36
 Identities = 68/227 (29%), Positives = 96/227 (42%), Gaps = 39/227 (17%)

Query: 45  DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT--------- 95
              ++   A  G  E ++  +  D+S  +    D++    +H A S G+           
Sbjct: 3   SNLMVCNLAYSGKLEELKESILADKS--LATRTDQDSRTALHWACSAGHTEIVEFLLQLG 60

Query: 96  ------------------------IVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
                                   IV+ LL KGA VN  N  G T LHYAASK   +I  
Sbjct: 61  VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAV 120

Query: 132 LLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICY 191
           +L+  GA  ++KD    TA+HR A+ GN  +  +L+   A  +  D  G TPL  A    
Sbjct: 121 MLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEE 180

Query: 192 NKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKAMLEG 238
             E A LL+  GA + +E+KE  T L  A      IL    K M+EG
Sbjct: 181 RVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLIL----KRMVEG 223

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (290), Expect = 6e-32
 Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 13/182 (7%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLS-------VDESANVVNAVDEEGWAPIHSAASIGNV 94
           +    T    AA  G  + ++ L           ++      + + G   +  AA  G+V
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 161

Query: 95  TIVEMLLSK-GADVNLKNDGGRTALH----YAASKGWLKIVELLISRGAKINSKDKVGCT 149
            ++++LL + GADVN  ++ GR AL      +       I  LL+  GA +N + + G T
Sbjct: 162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT 221

Query: 150 ALHRGASTGNSALCELLIE-EGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDV 208
            L       +  L + L+E E  E++ TD  G+T L+ AV    K++A LL + GA  D 
Sbjct: 222 PLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 281

Query: 209 ED 210
            D
Sbjct: 282 GD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 6e-28
 Identities = 64/255 (25%), Positives = 108/255 (42%), Gaps = 49/255 (19%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDD-RTLLHVAASCGHPEVVEILLSV----- 67
           L KA +  D    + L +     +++ + ++   T LH A      ++VE+LL       
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGA--NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66

Query: 68  -------------------------DESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLS 102
                                          VN  D  G+     AA  G V  ++ L  
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126

Query: 103 KGADVNLKN----------DGGRTALHYAASKGWLKIVELLISR-GAKINSKDKVGCTAL 151
           +GA+VNL+            GG TAL  AA KG ++++++L+   GA +N+ D +G  AL
Sbjct: 127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 186

Query: 152 HRGASTGNS----ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE-VALLLIRHGADV 206
                + +     A+  LL++ GA+V+   + G+TPL+ AV   +   V  LL +   ++
Sbjct: 187 IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI 246

Query: 207 DVEDKEGYTVLGRAS 221
           +  D +G T L  A 
Sbjct: 247 NDTDSDGKTALLLAV 261

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.3 bits (241), Expect = 8e-25
 Identities = 38/142 (26%), Positives = 53/142 (37%), Gaps = 38/142 (26%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANV---------------------------- 73
                T L  AA  GH EV++ILL  +  A+V                            
Sbjct: 145 RKGGATALMDAAEKGHVEVLKILLD-EMGADVNACDNMGRNALIHALLSSDDSDVEAITH 203

Query: 74  --------VNAVDEEGWAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALHYAASK 124
                   VN   E G  P+  A    ++ +V+ LL +   ++N  +  G+TAL  A   
Sbjct: 204 LLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL 263

Query: 125 GWLKIVELLISRGAKINSKDKV 146
              KI ELL  RGA  +  D V
Sbjct: 264 KLKKIAELLCKRGASTDCGDLV 285

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.9 bits (227), Expect = 7e-23
 Identities = 68/222 (30%), Positives = 103/222 (46%), Gaps = 50/222 (22%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL-- 101
           +D  LL  A      ++V+ LL  +  ANV    +E GW P+H+A  +    IVE+LL  
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLL--EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 102 -------------------------------SKGADVNLKNDGGRTALHYAASKGWLKIV 130
                                          SKGADVN  +  G TA   AA  G +K +
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121

Query: 131 ELLISRGAKINSKD----------KVGCTALHRGASTGNSALCELLIEE-GAEVDATDKA 179
           + L  RGA +N +           K G TAL   A  G+  + ++L++E GA+V+A D  
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM 181

Query: 180 GQTPLMNAVICYN----KEVALLLIRHGADVDVEDKEGYTVL 217
           G+  L++A++  +    + +  LL+ HGADV+V  + G T L
Sbjct: 182 GRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 223

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.1 bits (191), Expect = 9e-18
 Identities = 46/159 (28%), Positives = 70/159 (44%), Gaps = 1/159 (0%)

Query: 80  EGWAPIHSAASIGNVTIVEMLLSKGADVNLK-NDGGRTALHYAASKGWLKIVELLISRGA 138
           E    +  A    +V +V+ LL  GA+VN +  +GG T LH A       IVELL+  GA
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 139 KINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALL 198
               + K G T     A  G+  L +L + +GA+V+  D  G T  M A +    +    
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 199 LIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKAMLE 237
           L + GA+V++  K               ++  A K  +E
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE 162

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  104 bits (260), Expect = 4e-27
 Identities = 30/209 (14%), Positives = 63/209 (30%), Gaps = 16/209 (7%)

Query: 31  KQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS 90
            +QL      +      +  VAA  G    ++ L  +  S  +V  +  E +     AA 
Sbjct: 76  AKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAE 135

Query: 91  IGNVTIVEMLLSKGADVNLKN--DGGRTALHYAASKGWLKIVELLISRGAKINS---KDK 145
            G++ ++  L        +         A   AA  G L ++  L        +   + +
Sbjct: 136 NGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAE 195

Query: 146 VGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGAD 205
                       G+  +   L++    +           ++      K V   + RH   
Sbjct: 196 NYYAFRWAAVGRGHHNVINFLLDCPVMLA-------YAEIHEFEYGEKYVNPFIARHVN- 247

Query: 206 VDVEDKEGYTVLGRASNDFRPILIDAAKA 234
                KE +     ++ D    L+  ++ 
Sbjct: 248 ---RLKEMHDAFKLSNPDGVFDLVTKSEC 273

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 90.7 bits (224), Expect = 5e-22
 Identities = 23/215 (10%), Positives = 50/215 (23%), Gaps = 18/215 (8%)

Query: 39  SLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
           ++ N ++   L +        + +  +S   +   +  +  +    I    +     + +
Sbjct: 6   NIENYENDPQLRLIPWILWENLFQHFIS--ANELSLMTLSYKEAIHIFLPGTKNMEQVRQ 63

Query: 99  MLLSKGADVNL-----------KNDGGRTALHYAASKG---WLKIVELLISRGAKINSKD 144
           +L    A  N            K          AA  G    L  + LL++    +    
Sbjct: 64  LLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQ 123

Query: 145 KVGCTALHRGASTGNSALCELLIEEGAEVDATDKA--GQTPLMNAVICYNKEVALLLIRH 202
                A    A  G+  +   L E                    A    +  V   L   
Sbjct: 124 AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCEL 183

Query: 203 GADVDVEDKEGYTVLGRASNDFRPILIDAAKAMLE 237
                    +                 +    +L+
Sbjct: 184 APTEATAMIQAENYYAFRWAAVGRGHHNVINFLLD 218

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 71.1 bits (173), Expect = 5e-15
 Identities = 29/211 (13%), Positives = 54/211 (25%), Gaps = 21/211 (9%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV 73
              AAE G       L +    + +++   ++     +AA  GH  V+  L  +  +   
Sbjct: 130 FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT 189

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE-- 131
                E  +A   +A   G+  ++  LL     +               +    + V   
Sbjct: 190 AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRL 249

Query: 132 -------LLISRGAKINSKDKVGC-------TALHRGASTGNSALCELLIEEGA-----E 172
                   L +     +   K  C         L R            L+          
Sbjct: 250 KEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP 309

Query: 173 VDATDKAGQTPLMNAVICYNKEVALLLIRHG 203
                      L  A+   N+    LL+   
Sbjct: 310 TATIPGDANELLRLALRLGNQGACALLLSIP 340

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 41.0 bits (95), Expect = 5e-05
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 3/59 (5%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRND---DDRTLLHVAASCGHPEVVEILLSVDE 69
           L +  +       + L     +K+L+       D   LL +A   G+     +LLS+  
Sbjct: 283 LIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS 341

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 97.9 bits (242), Expect = 3e-25
 Identities = 47/228 (20%), Positives = 72/228 (31%), Gaps = 48/228 (21%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
            +D  T LH+A    H   ++ LL        ++  ++ G   +H AA +G  + VE L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN--------------SKDKVG 147
           + GA V +   GG TALH A          +L+                     + D   
Sbjct: 66  AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125

Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAG--------------------------- 180
             A         +       +   +++A +  G                           
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN 185

Query: 181 -------QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
                  +TPL  AV      V  LL++ GAD       G T LG A 
Sbjct: 186 KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSAL 233

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.1 bits (214), Expect = 3e-21
 Identities = 48/257 (18%), Positives = 80/257 (31%), Gaps = 59/257 (22%)

Query: 10  KDKD----LFKAAETGDSSTFKSL-SKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEIL 64
             +D    L  A           L       + L L+ND  +T LH+AA  G    VE  
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK- 63

Query: 65  LSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNL--------------K 110
             +  +   V   +  G   +H A  +   T   +LL                       
Sbjct: 64  --LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 111 NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGC---------------------- 148
           +     A   +      +          ++ +++  G                       
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG 181

Query: 149 ------------TALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVA 196
                       T LH       +++ ELL++ GA+  A    G+TPL +A++  N  +A
Sbjct: 182 ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILA 241

Query: 197 LLLIRHGADVDVEDKEG 213
            LL  HGA    E ++G
Sbjct: 242 RLLRAHGAP---EPEDG 255

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.4 bits (202), Expect = 2e-19
 Identities = 36/160 (22%), Positives = 61/160 (38%), Gaps = 17/160 (10%)

Query: 73  VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD---VNLKNDGGRTALHYAASKGWLKI 129
           V   V E+G   +H A    +   ++ LL   A    ++L+ND G+TALH AA  G    
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 130 VELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDAT------------- 176
           VE L + GA +   ++ G TALH            +L++                     
Sbjct: 61  VEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCT 120

Query: 177 -DKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYT 215
            D +     +++      E           ++ E+ +G+T
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT 160

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.7 bits (174), Expect = 1e-15
 Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 3/117 (2%)

Query: 110 KNDGGRTALHYAASKGWLKIVELLISRGAK---INSKDKVGCTALHRGASTGNSALCELL 166
             + G TALH A        ++ L+   A    ++ ++ +G TALH  A  G ++  E L
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 167 IEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASND 223
              GA V   ++ G T L  A        A +L++       +  + Y    +    
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 96.7 bits (239), Expect = 2e-24
 Identities = 58/252 (23%), Positives = 84/252 (33%), Gaps = 63/252 (25%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIV---- 97
             DD  +   A S G  E V  LL     A++ N  + +G   +H A    NV +V    
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLE--RGADI-NYANVDGLTALHQACIDDNVDMVKFLV 93

Query: 98  -----------------------------EMLLSKGADVNLKNDGGRTALHYAASKG--- 125
                                        E L+S+GA V   N  G T L  A  +    
Sbjct: 94  ENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEE 153

Query: 126 ------------------------WLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
                                        + L S         K G TALH  A+ G + 
Sbjct: 154 LLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTE 213

Query: 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
           + +LLI+   +V+  D  G TPL  A     +E   +L+ +  D++  +K G T    A 
Sbjct: 214 VLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD 273

Query: 222 NDFRPILIDAAK 233
            D    L +  K
Sbjct: 274 EDILGYLEELQK 285

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 83.2 bits (204), Expect = 1e-19
 Identities = 26/96 (27%), Positives = 44/96 (45%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
                + G   +H AA+ G   ++++L+    DVN+K+  G T LH AA  G  +   +L
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251

Query: 134 ISRGAKINSKDKVGCTALHRGASTGNSALCELLIEE 169
           +     + + +KVG TA           L EL  ++
Sbjct: 252 VENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQ 287

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 64.0 bits (154), Expect = 9e-13
 Identities = 45/118 (38%), Positives = 58/118 (49%)

Query: 77  VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR 136
           V  +  A   +A S G+   V  LL +GAD+N  N  G TALH A     + +V+ L+  
Sbjct: 36  VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVEN 95

Query: 137 GAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
           GA IN  D  G   LH  AS G   + E LI +GA V A +  G TPL  A     +E
Sbjct: 96  GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEE 153

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 62.0 bits (149), Expect = 4e-12
 Identities = 40/120 (33%), Positives = 55/120 (45%), Gaps = 1/120 (0%)

Query: 95  TIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRG 154
           T +E  + K     +K D G      A S G  + V  L+ RGA IN  +  G TALH+ 
Sbjct: 22  TDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQA 80

Query: 155 ASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGY 214
               N  + + L+E GA ++  D  G  PL  A  C   ++A  LI  GA V   + EG 
Sbjct: 81  CIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGD 140

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 53.2 bits (126), Expect = 4e-09
 Identities = 20/100 (20%), Positives = 25/100 (25%), Gaps = 40/100 (40%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           + D  T LH AA  G  E   I                                    L+
Sbjct: 229 DYDGWTPLHAAAHWGKEEACRI------------------------------------LV 252

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
               D+   N  G+TA   A       I+  L     K N
Sbjct: 253 ENLCDMEAVNKVGQTAFDVADE----DILGYLEELQKKQN 288

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 94.7 bits (234), Expect = 9e-24
 Identities = 43/267 (16%), Positives = 83/267 (31%), Gaps = 55/267 (20%)

Query: 4   DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEI 63
           D +Q +K +   +     +     +          S     ++   HV+      EV + 
Sbjct: 32  DNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDA 91

Query: 64  LLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN--------------- 108
             +     N+   VDE G  P+H   SI N+ +V+ L+  G++                 
Sbjct: 92  FPNTQ--LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVK 149

Query: 109 ----------------------LKNDGGRTALHYAASKG-------------WLKIVELL 133
                                 L++   RT LH+                   + +  ++
Sbjct: 150 SVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIV 209

Query: 134 ISRGAKINSKDKVGCTALHRGASTGNSALCELLIEE---GAEVDATDKAGQTPLMNAVIC 190
             +   I S      +  +        ++ E L  +      ++A D  G T L  A   
Sbjct: 210 KKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARL 269

Query: 191 YNKEVALLLIRHGADVDVEDKEGYTVL 217
            N  +   L+ +GAD  + +K G   +
Sbjct: 270 GNISIVDALLDYGADPFIANKSGLRPV 296

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 90.1 bits (222), Expect = 5e-22
 Identities = 28/196 (14%), Positives = 59/196 (30%), Gaps = 50/196 (25%)

Query: 43  DDDRTLLHVAASCGHPEVVEILLS----------------------------------VD 68
           +   T LH   S  + E+V+ L+                                   +D
Sbjct: 105 EHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLD 164

Query: 69  ESANVVNAVDEEGWAPIHSAASIGNVTIVEM-------------LLSKGADVNLKNDGGR 115
                +   D      +H       +T                 +  +   +    +   
Sbjct: 165 YLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE 224

Query: 116 TALHYAASKGWLKIVELLISR---GAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE 172
           +  +    +    I+E L  +      +N++D  G T L+  A  GN ++ + L++ GA+
Sbjct: 225 SKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD 284

Query: 173 VDATDKAGQTPLMNAV 188
               +K+G  P+    
Sbjct: 285 PFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.8 bits (203), Expect = 2e-19
 Identities = 22/85 (25%), Positives = 40/85 (47%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIV 97
           +    ++  +  +         ++E L      AN++NA D  G   ++ AA +GN++IV
Sbjct: 216 IQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIV 275

Query: 98  EMLLSKGADVNLKNDGGRTALHYAA 122
           + LL  GAD  + N  G   + + A
Sbjct: 276 DALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.0 bits (201), Expect = 4e-19
 Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 13/135 (9%)

Query: 34  LLKSLSLRNDDDRTLLHVAASCGHPEV----------VEILLSVDESANVVNAVDEEGWA 83
           L   L L +  +RT+LH                    + +   V +    + +   E  +
Sbjct: 166 LYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKES 225

Query: 84  PIHSAASIGNVTIVEMLLSK---GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
             +        +I+E L  K      +N ++  G T L+ AA  G + IV+ L+  GA  
Sbjct: 226 KPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP 285

Query: 141 NSKDKVGCTALHRGA 155
              +K G   +  GA
Sbjct: 286 FIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.7 bits (130), Expect = 1e-09
 Identities = 28/164 (17%), Positives = 54/164 (32%), Gaps = 11/164 (6%)

Query: 83  APIHSAASIGNVTIVEMLLSKGADVN-LKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
           A +          +   L +  ++ N       +   H +      ++ +   +    +N
Sbjct: 41  AFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLN 100

Query: 142 SK-DKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYN-------K 193
              D+ G T LH   S  N  L + L++ G+     D  G++ L+ AV   N       +
Sbjct: 101 IPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFE 160

Query: 194 EVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKAMLE 237
            +   L       D  ++     +   S         AAK  L+
Sbjct: 161 ALLDYLYPCLILEDSMNRTILHHIIITSG--MTGCSAAAKYYLD 202

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 88.3 bits (217), Expect = 7e-22
 Identities = 61/223 (27%), Positives = 90/223 (40%), Gaps = 43/223 (19%)

Query: 49  LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADV- 107
           LH A        V+ LL      +++   D++G  P+H + S     I   LLSK  +V 
Sbjct: 4   LHQACMENEFFKVQELL--HSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 108 -------------------------------------NLKNDGGRTALHYAASKGWLKIV 130
                                                N   + G T LH A  K W ++ 
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 131 ELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE-VDATDKAGQTPLMNAVI 189
           + LI  GA +  KDK     LHR AS G+  L ELL   G   V+  DK G TPL +A+ 
Sbjct: 122 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 181

Query: 190 CYNKEVA-LLLIRHGADVDVEDKEGYTVLGRASN-DFRPILID 230
             + + A LL+ ++GA+ D+ D +G      A N   +   ++
Sbjct: 182 EGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFLN 224

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.6 bits (189), Expect = 6e-18
 Identities = 54/233 (23%), Positives = 85/233 (36%), Gaps = 49/233 (21%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKS----LSLRNDDDRTLLHVAASCGHPEVV-------- 61
           L +A    +    +     +LL S    L  ++ D R  LH + S    E+         
Sbjct: 4   LHQACMENEFFKVQ-----ELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 58

Query: 62  ---------------------------EILLSVDESANVVNAVDEEGWAPIHSAASIGNV 94
                                         L        +N +  +G   +H A      
Sbjct: 59  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 118

Query: 95  TIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK-INSKDKVGCTALHR 153
            + + L+  GA V +K+   +  LH AAS G LK++ELL   G   +N +DK G T L  
Sbjct: 119 EVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH 178

Query: 154 GASTGNSALCELLIEE-GAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGAD 205
             + G+     LL+E+ GAE D  D  G      A+   N++V    + +  D
Sbjct: 179 ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.8 bits (135), Expect = 2e-10
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 116 TALHYAASKGWLKIV-ELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEG 170
             LH A  +     V ELL S+ + +  KD+ G   LH   S     +   L+ + 
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 3e-07
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 149 TALHRGASTGN-SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHG 203
             LH+         + ELL  + + +   D+ G+ PL  +V     E+   L+   
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 81.4 bits (199), Expect = 1e-19
 Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 31/190 (16%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEIL-------------------------------LSVDE 69
            +    T LH+AA     +  + L                               + +  
Sbjct: 19  MDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRN 78

Query: 70  SANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKI 129
            A  +NA   +G  P+  AA +    +VE L++  AD+N  ++ G+TALH+AA+    + 
Sbjct: 79  RATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEA 138

Query: 130 VELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVI 189
           V +L+   A  +++D    T L   A  G+    + L++  A  + TD   + P   A  
Sbjct: 139 VNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASE 198

Query: 190 CYNKEVALLL 199
             + ++  LL
Sbjct: 199 RLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 76.8 bits (187), Expect = 9e-18
 Identities = 51/198 (25%), Positives = 79/198 (39%), Gaps = 36/198 (18%)

Query: 58  PEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTA 117
            +V+  LL+  + A +   +D+ G   +H AA        + LL  GAD N +++ GRT 
Sbjct: 2   AQVISDLLA--QGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTP 59

Query: 118 LHYAASKG----------------------------------WLKIVELLISRGAKINSK 143
           LH A +                                       +VE LI+  A IN+ 
Sbjct: 60  LHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAA 119

Query: 144 DKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHG 203
           D  G TALH  A+  N+    +L+   A  DA D   +TPL  A    + E +  L+ + 
Sbjct: 120 DNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNF 179

Query: 204 ADVDVEDKEGYTVLGRAS 221
           A+ ++ D         AS
Sbjct: 180 ANREITDHMDRLPRDVAS 197

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.8 bits (86), Expect = 5e-04
 Identities = 7/28 (25%), Positives = 14/28 (50%)

Query: 37  SLSLRNDDDRTLLHVAASCGHPEVVEIL 64
           +  + +  DR    VA+   H ++V +L
Sbjct: 181 NREITDHMDRLPRDVASERLHHDIVRLL 208

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 82.1 bits (201), Expect = 3e-19
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 2/94 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
                RT LH AA   +  +V+    V E  +  +  DE+G  PI  AA  G + +V  L
Sbjct: 183 EKYKGRTALHYAAQVSNMPIVKY--LVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL 240

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
           + +GA V   +    TA   A +     IV++  
Sbjct: 241 IQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 80.2 bits (196), Expect = 1e-18
 Identities = 54/233 (23%), Positives = 87/233 (37%), Gaps = 53/233 (22%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANV-----VNAVDEEGWAPIHSAASIGNVTI 96
              +RT+LH  AS    E  E L+  +    +     VNA+D +   P+  A       +
Sbjct: 30  PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRL 89

Query: 97  VEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA------------------ 138
           V  L+  GAD  + N   R+ALH AA+     ++  +++                     
Sbjct: 90  VAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMI 149

Query: 139 -----------------------------KINSKDKVGCTALHRGASTGNSALCELLIE- 168
                                        + +S+   G TALH  A   N  + + L+  
Sbjct: 150 VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE 209

Query: 169 EGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
           +G+  D  D+ G+TP+M A      EV + LI+ GA V+  D   +T    A 
Sbjct: 210 KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQ 262

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 79.8 bits (195), Expect = 2e-18
 Identities = 23/96 (23%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLS-KGADVNLKNDGGRTALHYAASKGWLKIVEL 132
            ++   +G   +H AA + N+ IV+ L+  KG++ + +++ G+T +  AA +G +++V  
Sbjct: 180 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMY 239

Query: 133 LISRGAKINSKDKVGCTALHRGASTGNSALCELLIE 168
           LI +GA + + D    TA     +  +  + ++   
Sbjct: 240 LIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 79.4 bits (194), Expect = 3e-18
 Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 12/159 (7%)

Query: 55  CGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT-----------IVEMLLSK 103
                ++  +L+  +    +  +D  G   +   A                   ++    
Sbjct: 117 NRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDG 176

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLIS-RGAKINSKDKVGCTALHRGASTGNSAL 162
            A  + +   GRTALHYAA    + IV+ L+  +G+  + +D+ G T +   A  G   +
Sbjct: 177 AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEV 236

Query: 163 CELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIR 201
              LI++GA V+A D    T    A    +  +  +  R
Sbjct: 237 VMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 73.6 bits (179), Expect = 3e-16
 Identities = 28/132 (21%), Positives = 53/132 (40%), Gaps = 10/132 (7%)

Query: 80  EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL------ 133
           E    +H+ A+ G+  I E +  +  ++       RT LH+ AS    +  E L      
Sbjct: 1   ESPIKLHTEAA-GSYAITEPITRESVNIIDPRHN-RTVLHWIASNSSAEKSEDLIVHEAK 58

Query: 134 --ISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICY 191
             I+ GA +N+ D    T L          L   L++ GA+    +K+ ++ L  A    
Sbjct: 59  ECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANR 118

Query: 192 NKEVALLLIRHG 203
           +  + + ++   
Sbjct: 119 DFGMMVYMLNST 130

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 51.7 bits (122), Expect = 1e-08
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 10/77 (12%)

Query: 149 TALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRH------ 202
             LH   + G+ A+ E +  E   +    +  +T L       + E +  LI H      
Sbjct: 4   IKLHT-EAAGSYAITEPITRESVNI-IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECI 61

Query: 203 --GADVDVEDKEGYTVL 217
             GADV+  D +  T L
Sbjct: 62  AAGADVNAMDCDENTPL 78

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILL 65
           +  AA+ G       L +Q    S+   +  D T   +A +  H  +V+I  
Sbjct: 225 IMLAAQEGRIEVVMYLIQQGA--SVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.7 bits (197), Expect = 5e-19
 Identities = 48/219 (21%), Positives = 84/219 (38%), Gaps = 39/219 (17%)

Query: 43  DDDRTLLHVAASCGHPEVVEILLSVDESANV-VNAVDEEGWAPIH--------------- 86
           +D  T LH+A   G+   V  L+++ +     ++  +     P+H               
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 60

Query: 87  ------------------SAASIGNVTIVEMLLSKGADVNLKNDG----GRTALHYAASK 124
                              A    + T +  LL   A   L  +     G TALH A + 
Sbjct: 61  TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 120

Query: 125 GWLKIVELLISRGAKINSKDKVGCT-ALHRGASTGNSALCELLIEEGAEVDATDKAGQTP 183
              + V+LL+ RGA I++ D       L       + ++ +LL++ GA V+A   +G + 
Sbjct: 121 ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSA 180

Query: 184 LMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASN 222
           L +A       +   L+R GAD  +++    T L  A +
Sbjct: 181 LHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARS 219

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (167), Expect = 8e-15
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 49  LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
           L  A       +V++L    +    VNA    G + +HSA+  G + +V  L+  GAD +
Sbjct: 148 LIHAVENNSLSMVQLL---LQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS 204

Query: 109 LKNDGGRTALHYAASKGWLKIV 130
           LKN    T L  A S+  + I+
Sbjct: 205 LKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (153), Expect = 6e-13
 Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 2/118 (1%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           N D  T LHVA +    E V++LL  +  A++     + G +P+  A    ++++V++LL
Sbjct: 107 NYDGLTALHVAVNTECQETVQLLL--ERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL 164

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN 159
             GA+VN +   G +ALH A+ +G L +V  L+  GA  + K+    T L    S   
Sbjct: 165 QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV 222

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (148), Expect = 4e-12
 Identities = 47/219 (21%), Positives = 78/219 (35%), Gaps = 37/219 (16%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLK--SLSLRNDDDRTLLHVAAS----------------- 54
           L  A   G+      L          L + N+  +T LH+A                   
Sbjct: 7   LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP 66

Query: 55  ----------------CGHPEVVEILL-SVDESANVVNAVDEEGWAPIHSAASIGNVTIV 97
                              P  +  LL S       + A + +G   +H A +      V
Sbjct: 67  MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETV 126

Query: 98  EMLLSKGADVNLKNDGGRT-ALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAS 156
           ++LL +GAD++  +       L +A     L +V+LL+  GA +N++   G +ALH  + 
Sbjct: 127 QLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASG 186

Query: 157 TGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEV 195
            G   L   L+  GA+    +    TPLM A      ++
Sbjct: 187 RGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDI 225

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.5 bits (179), Expect = 4e-17
 Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 12/138 (8%)

Query: 80  EGWAPIHS---AASIGNVTIVEMLLSKGADVNLK------NDGGRTALHYAA---SKGWL 127
           +  A +HS   A    ++  +    + G D+  K      ++   TALH A     +  L
Sbjct: 2   DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 128 KIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
            IV+ L+     ++ +   G TALH    T N+   +LL+   A ++  +++G+TPL  A
Sbjct: 62  HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 121

Query: 188 VICYNKEVALLLIRHGAD 205
               ++    LL +  + 
Sbjct: 122 KRLKHEHCEELLTQALSG 139

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.1 bits (147), Expect = 1e-12
 Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 5/146 (3%)

Query: 6   DQTIKDKDLFKAAETGDSSTFKSLSKQ----QLLKSLSLRNDDDRTLLHVAASCGHPEVV 61
           D   K   L +A +T D                   L+  ++ D T LH+A        +
Sbjct: 2   DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 62  EILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA 121
            I+  + +++  ++    +G   +H      N   +++LL   A + + N+ G T L  A
Sbjct: 62  HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 121

Query: 122 ASKGWLKIVELLISRGA-KINSKDKV 146
                    ELL    + + NS   V
Sbjct: 122 KRLKHEHCEELLTQALSGRFNSHVHV 147

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.7 bits (107), Expect = 5e-07
 Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 9/120 (7%)

Query: 111 NDGGRTALHYAASKGWLKIVELLISRGAKINSK------DKVGCTALH---RGASTGNSA 161
                 +L  A     +  +    + G  +  K       +   TALH   R     +  
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
           + + L++    +D     G T L    +  N E   LL+R  A +++ ++ G T L  A 
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 122

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.0 bits (177), Expect = 3e-16
 Identities = 50/219 (22%), Positives = 79/219 (36%), Gaps = 46/219 (21%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANV-VNAVDEEGWAPIHSAASIGNVTIVEMLLS 102
           D  + LH+A       +   ++   +     +N  +     P+H A       I E LL 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 103 KGADVNLKNDGG---------------------------------------RTALHYAAS 123
            G D  L++  G                                        T LH A+ 
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 124 KGWLKIVELLISRGAKINSKDKV-GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQT 182
            G+L IVELL+S GA +N+++   G TALH      N  L  LL++ GA+V+     G +
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 180

Query: 183 PLMNAVICYNKEVALLLIRHGAD-----VDVEDKEGYTV 216
           P        +  +   L +   +      + ED+E Y  
Sbjct: 181 PYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDT 219

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (158), Expect = 1e-13
 Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 2/104 (1%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           N +  T LH+A+  G+  +VE  L V   A+V       G   +H A  + N  +V +LL
Sbjct: 108 NYNGHTCLHLASIHGYLGIVE--LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 165

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             GADVN     G +       +   +I + L     +      
Sbjct: 166 KCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP 209

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 6e-06
 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 180 GQTPLMNAVICYNKEVALLLIR----HGADVDVEDKEGYTVLGRA 220
           G + L  A+I   K + + +IR      A ++ ++    T L  A
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA 46

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (151), Expect = 3e-13
 Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 33/127 (25%)

Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDE--------------------------- 79
            LL  ++  G  ++V+ ++   +  ++ N                               
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 80  ---EGWAPIHSAASIGNVTIVEMLLSKGADVNLKND-GGRTA--LHYAASKGWLKIVELL 133
              +GW P+H AAS  NV + + L+  GA V        +TA        +G+ +  + L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 134 ISRGAKI 140
                K+
Sbjct: 123 YGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 2e-10
 Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 3/127 (2%)

Query: 83  APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINS 142
           A +  ++  G   +V+ ++ +  D +L ND G TALH A   G  +IV+ L+  G  +N+
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 143 KDKVGCTALHRGASTGNSALCELLIEEGAEVDA-TDKAGQTPLMNAVICYN--KEVALLL 199
            D  G T LH  AS  N  +C+ L+E GA V A T    QT             + +  L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 200 IRHGADV 206
                 +
Sbjct: 123 YGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 3e-08
 Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 1/103 (0%)

Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 175
             L  ++ +G   +V+ +I      +  +  G TALH     G++ + + L++ G  V+A
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 176 TDKAGQTPLMNAVICYNKEVALLLIRHGADVD-VEDKEGYTVL 217
            D  G TPL  A  C N +V   L+  GA V  +   +  T  
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAA 105

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (148), Expect = 1e-12
 Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 4/154 (2%)

Query: 49  LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
           L  AA+ G  + V  LL         +A++  G   +           +E+L    +   
Sbjct: 6   LSGAAARGDVQEVRRLL--HRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV 63

Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIE 168
            ++  G + +H AA  G+L  +++L+  GA +N  D  G   +H     G++A+    + 
Sbjct: 64  -QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF-LA 121

Query: 169 EGAEVDATDKAGQTPLMNAVICYNKEVALLLIRH 202
             +++   D  G TPL  A+    +++  +L  H
Sbjct: 122 AESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 2e-05
 Identities = 31/141 (21%), Positives = 47/141 (33%), Gaps = 34/141 (24%)

Query: 114 GRTALHYAASKGWLKIV-ELLISRGAKINSKDKVGCTALHRGASTGNSALCEL------- 165
               L  AA++G ++ V  LL       ++ ++ G TAL        +   EL       
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61

Query: 166 -------------------------LIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLI 200
                                    L+E GA+V+  D  G  P+  AV   +  V   L 
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121

Query: 201 RHGADVDVEDKEGYTVLGRAS 221
              +D+   D  G T L  A 
Sbjct: 122 AE-SDLHRRDARGLTPLELAL 141

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 9e-05
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEILLS 66
           L  R+    T L +A   G  ++V+IL  
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (78), Expect = 0.004
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 178 KAGQTPLMNAVICYN-KEVALLLIRHGADVDVEDKEGYT 215
           +AG   L  A    + +EV  LL R     D  ++ G T
Sbjct: 1   RAGDR-LSGAAARGDVQEVRRLLHRELVHPDALNRFGKT 38

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.0 bits (146), Expect = 2e-12
 Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 1/138 (0%)

Query: 84  PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
            +  AA  G    V +L++ GA     +  G + LH AA  G     E+L+  G   +++
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 144 DKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHG 203
            KV  T LH  AS G++ + E+L++ GA+V+A D    T L  A    ++EV  LLI++G
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

Query: 204 ADVDVEDKEGYTVLGRAS 221
           ADV  + K   T    + 
Sbjct: 124 ADVHTQSKFCKTAFDISI 141

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.3 bits (144), Expect = 3e-12
 Identities = 52/156 (33%), Positives = 79/156 (50%), Gaps = 4/156 (2%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           D    L  AA  G  + V IL++           D  G +P+H AA  G+ +  E+LL  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMA----NGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
           G   + +    RT LH AAS+G   IVE+L+  GA +N+KD +  TALH      +  + 
Sbjct: 57  GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV 116

Query: 164 ELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL 199
           ELLI+ GA+V    K  +T    ++   N+++A +L
Sbjct: 117 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.5 bits (85), Expect = 3e-04
 Identities = 5/27 (18%), Positives = 14/27 (51%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEIL 64
           +  ++   +T   ++   G+ ++ EIL
Sbjct: 126 VHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (138), Expect = 2e-11
 Identities = 27/155 (17%), Positives = 45/155 (29%), Gaps = 3/155 (1%)

Query: 49  LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
           L  AA+ G  E +  LL    + NV NA +  G   +             +LL       
Sbjct: 5   LASAAARGDLEQLTSLL--QNNVNV-NAQNGFGRTALQVMKLGNPEIARRLLLRGANPDL 61

Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIE 168
               G       A +     +  LL  +       ++                +  L+  
Sbjct: 62  KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 121

Query: 169 EGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHG 203
             + V   +  G T    A +    EV  L+  +G
Sbjct: 122 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (117), Expect = 2e-08
 Identities = 8/33 (24%), Positives = 17/33 (51%)

Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDKVGC 148
             L  AA++G L+ +  L+     +N+++  G 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGR 35

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 3e-05
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 149 TALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYN 192
             L   A+ G+      L++    V+A +  G+T L    +   
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNP 46

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 5e-05
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 40  LRNDDDRTLLHVAASCGHPEVVEILLS 66
            RN    T   +A   G  EVV ++ +
Sbjct: 128 HRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.001
 Identities = 6/33 (18%), Positives = 15/33 (45%)

Query: 182 TPLMNAVICYNKEVALLLIRHGADVDVEDKEGY 214
             L +A    + E    L+++  +V+ ++  G 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGR 35

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 1e-08
 Identities = 23/123 (18%), Positives = 38/123 (30%), Gaps = 30/123 (24%)

Query: 43  DDDRTLLHVAASCGHPEVVEILLSVDESANV----------------------------- 73
           +     L  AA+ G  E V  LL    + N                              
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAE 60

Query: 74  -VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVEL 132
              A       P+H AA  G +  + +L   GA +++++  GR  +  A   G   +   
Sbjct: 61  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 120

Query: 133 LIS 135
           L +
Sbjct: 121 LRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 3e-05
 Identities = 28/125 (22%), Positives = 46/125 (36%), Gaps = 4/125 (3%)

Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
           +     L  AA++G ++ V  L+  GA  N+ +  G   +             LL+    
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAE 60

Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS-NDFRPI--- 227
              A       P+ +A      +  ++L R GA +DV D  G   +  A     R +   
Sbjct: 61  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 120

Query: 228 LIDAA 232
           L  AA
Sbjct: 121 LRAAA 125

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 4e-04
 Identities = 7/26 (26%), Positives = 12/26 (46%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLS 66
           R+   R  + +A   GH +V   L +
Sbjct: 98  RDAWGRLPVDLAEELGHRDVARYLRA 123

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.9 bits (91), Expect = 4e-05
 Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 7/122 (5%)

Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 175
               +A   G L  V+  +++G  +N   + G   LH  A  G   + E L+ +GA+++A
Sbjct: 4   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 63

Query: 176 TDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKAM 235
            DK   TPL++AV   +     LL+  GAD  V+  +G T L    N        A KA+
Sbjct: 64  PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDN-------QAIKAL 116

Query: 236 LE 237
           L+
Sbjct: 117 LQ 118

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.1 bits (89), Expect = 6e-05
 Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 8/123 (6%)

Query: 11  DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDES 70
           DK+   A + GD    K       +      N                  +EIL  +   
Sbjct: 3   DKEFMWALKNGDLDEVK-----DYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 57

Query: 71  ANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIV 130
              +NA D+    P+ SA   G+V+ V++LLSKGAD  +K   G TAL    ++    I 
Sbjct: 58  GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQA---IK 114

Query: 131 ELL 133
            LL
Sbjct: 115 ALL 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	238
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.98
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.97
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.97
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.97
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.97
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.96
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.95
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.95
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.95
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.94
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.92
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.92

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-44  Score=260.85  Aligned_cols=221  Identities=38%  Similarity=0.492  Sum_probs=205.0

Q ss_pred             cChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHH
Q 026440           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAA   89 (238)
Q Consensus        10 ~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~   89 (238)
                      ++..++.++.+|+.+.|+.++... +..++.+|..|+||||+|+..|+.+++++++..+..   .......+.++++.++
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~-~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~---~~~~~~~~~~~~~~~~   78 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAA   78 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC---SCCCCTTCCCHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhC-CCcCcCcCCCCCCHHHHHHHhhhhcccccccccccc---cccccccccccccccc
Confidence            466789999999999999999887 677889999999999999999999999999987766   4455668899999999


Q ss_pred             HcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhc
Q 026440           90 SIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEE  169 (238)
Q Consensus        90 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  169 (238)
                      ..++.+++++|++++++++.++..|.||||+|+..|+.+++++|+++|++++..+..+.||+|.|+..+..+++++|...
T Consensus        79 ~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~  158 (223)
T d1uoha_          79 SAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY  158 (223)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHHHHhcC
Q 026440          170 GAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKAMLEG  238 (238)
Q Consensus       170 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~  238 (238)
                      +.+++..+.+|.||||.|+..++.+++++|+++|++++.+|.+|+||||+|. .++.+   .++.|||+
T Consensus       159 ~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~-~~~~~---i~~~Ll~~  223 (223)
T d1uoha_         159 KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGL---ILKRMVEG  223 (223)
T ss_dssp             TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCC-TTHHH---HHHHHHCC
T ss_pred             cceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-CCCHH---HHhcccCC
Confidence            9999999999999999999999999999999999999999999999999995 57755   55666664

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.6e-40  Score=238.95  Aligned_cols=218  Identities=32%  Similarity=0.455  Sum_probs=198.9

Q ss_pred             ChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHH
Q 026440           11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS   90 (238)
Q Consensus        11 ~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~   90 (238)
                      +.+||+||.+|+.+.|+.|++.. +..++.++.+|+||||+|+..|+.+++++|++.+.++......+..|.+|++++..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~-~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHC-GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcC-CCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccc
Confidence            46899999999999999999876 56888999999999999999999999999999998877777888899999999999


Q ss_pred             cCCHHHHHHHHHcCCCCc--ccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHh
Q 026440           91 IGNVTIVEMLLSKGADVN--LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIE  168 (238)
Q Consensus        91 ~~~~~~~~~Ll~~~~~~~--~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  168 (238)
                      .+..++++.++..+....  ..+..+.++++.++..++.+++++|++.+...+..+..|.||+|.|+..++.+++++|++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  159 (229)
T d1ixva_          80 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG  159 (229)
T ss_dssp             HTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccc
Confidence            999999999999876544  355678899999999999999999999999999999999999999999999999999999


Q ss_pred             cC-CCCCccccCCCcHHHHHHHhCCHHHHHHHHh-cCCCCccCCCCCCchhhccccccchHHHHHH
Q 026440          169 EG-AEVDATDKAGQTPLMNAVICYNKEVALLLIR-HGADVDVEDKEGYTVLGRASNDFRPILIDAA  232 (238)
Q Consensus       169 ~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~  232 (238)
                      .+ .+++.++.+|.||||+|+..++.+++++|++ .|++++.+|.+|+|||++|+..   +++++|
T Consensus       160 ~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~~---~~~~~L  222 (229)
T d1ixva_         160 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFF  222 (229)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSCH---HHHHHH
T ss_pred             cccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhhH---HHHHHH
Confidence            86 6789999999999999999999999999997 5999999999999999999863   444444

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-40  Score=246.25  Aligned_cols=228  Identities=25%  Similarity=0.219  Sum_probs=176.2

Q ss_pred             chhhhccChHHHHHHHcCChHHHHHHHHHHh-hhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCC
Q 026440            4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQL-LKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (238)
Q Consensus         4 ~~~~~~~~~~l~~a~~~g~~~~v~~l~~~~~-~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~   82 (238)
                      .+.+..++++||+|++.|+.+++++|++.+. ...++.++..|.||||+|+..|+.+++++|++.|.+   ++..+..|.
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~---i~~~d~~g~   79 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG---VLVAERGGH   79 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---SSCCCTTSC
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccccc---ccccccccc
Confidence            4456778899999999999999999998873 334677888999999999999999999999998877   667788999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCcccCC----------CCchHHHHHHHcC----CHHHHHHHHHcCCCCCCCCCCCC
Q 026440           83 APIHSAASIGNVTIVEMLLSKGADVNLKND----------GGRTALHYAASKG----WLKIVELLISRGAKINSKDKVGC  148 (238)
Q Consensus        83 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~----------~~~~~l~~a~~~~----~~~~~~~l~~~~~~~~~~~~~~~  148 (238)
                      |||++|+..++.+++++|++.+........          ...+....+....    ...........+..++..+..|.
T Consensus        80 tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~  159 (255)
T d1oy3d_          80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH  159 (255)
T ss_dssp             CHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSC
T ss_pred             hhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCc
Confidence            999999999999999999887543221110          0001111111111    11111222233556677888899


Q ss_pred             cHHHHHHhhCCHHHHHHHHhcCCCCCc-cccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchH
Q 026440          149 TALHRGASTGNSALCELLIEEGAEVDA-TDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPI  227 (238)
Q Consensus       149 t~l~~a~~~~~~~~~~~Ll~~~~~~~~-~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~  227 (238)
                      ||||+|+..++.+++++|++.+++.+. .+..|.||||+|++.++.+++++|+++|++++.+|..|.||||+|+..++.+
T Consensus       160 TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~  239 (255)
T d1oy3d_         160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPI  239 (255)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHH
T ss_pred             ccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence            999999999999999999999988875 4667999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHH
Q 026440          228 LIDAAKA  234 (238)
Q Consensus       228 ~~~~~~~  234 (238)
                      ++++|..
T Consensus       240 i~~~Ll~  246 (255)
T d1oy3d_         240 LARLLRA  246 (255)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8877653

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.8e-39  Score=238.94  Aligned_cols=201  Identities=26%  Similarity=0.256  Sum_probs=154.0

Q ss_pred             cchhhhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhccccccc-------c
Q 026440            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVV-------N   75 (238)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~-------~   75 (238)
                      ++..+..+.++||+|+..|+.++++.|++.+  .+++..+..|.||||+|+..++.+++++|++.+......       .
T Consensus        38 i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~g--a~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~  115 (255)
T d1oy3d_          38 LDLQNDLGQTALHLAAILGEASTVEKLYAAG--AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ  115 (255)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------
T ss_pred             ccCcCCCCCCccchHHhhccccccccccccc--ccccccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhH
Confidence            3455667789999999999999999999886  578888999999999999999999999998754331110       0


Q ss_pred             cccCCCCcHHHHHHHcCC----HHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCcH
Q 026440           76 AVDEEGWAPIHSAASIGN----VTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK-DKVGCTA  150 (238)
Q Consensus        76 ~~~~~~~t~l~~a~~~~~----~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~-~~~~~t~  150 (238)
                      ..+....+....+.....    ..........+..++.++..|.||||+|+..++.+++++|++.+++.+.. +..|.||
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~Tp  195 (255)
T d1oy3d_         116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTP  195 (255)
T ss_dssp             ----------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCH
T ss_pred             HhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhccccccccccccccccc
Confidence            000011111111111111    11111111234556677889999999999999999999999999988764 5679999


Q ss_pred             HHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCC
Q 026440          151 LHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGAD  205 (238)
Q Consensus       151 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~  205 (238)
                      ||+|+..++.+++++|+++|++++.++..|.||||+|+..++.+++++|+++||+
T Consensus       196 L~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         196 LHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             ccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999999999996

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=4.9e-39  Score=242.00  Aligned_cols=216  Identities=29%  Similarity=0.429  Sum_probs=192.1

Q ss_pred             ChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHH
Q 026440           11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS   90 (238)
Q Consensus        11 ~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~   90 (238)
                      .+.|+.|+..|++++|++|++.+  .+++..|.+|.||||+|+..|+.+++++|++.+..   ....+..+.+||+.|+.
T Consensus        41 ~t~l~~A~~~G~~~~v~~Ll~~G--advn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~---~~~~~~~~~~~L~~a~~  115 (291)
T d1s70b_          41 GAVFLAACSSGDTEEVLRLLERG--ADINYANVDGLTALHQACIDDNVDMVKFLVENGAN---INQPDNEGWIPLHAAAS  115 (291)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHC--CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHCC--CCCCccCCCCCcHHHHHHhcCCceeeeeecccccc---ccccccccccccccccc
Confidence            46799999999999999999987  57888999999999999999999999999998876   45556789999999999


Q ss_pred             cCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHc-C--------------------------CCCCCC
Q 026440           91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR-G--------------------------AKINSK  143 (238)
Q Consensus        91 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~-~--------------------------~~~~~~  143 (238)
                      .++.+++++|+++|...+..+..+.+++++|+..+..+.+..++.. +                          ......
T Consensus       116 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (291)
T d1s70b_         116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH  195 (291)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred             ccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccc
Confidence            9999999999999999998999999999999888888877777643 2                          223345


Q ss_pred             CCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccc
Q 026440          144 DKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASND  223 (238)
Q Consensus       144 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~  223 (238)
                      +..+.|||+.|+..++.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+++
T Consensus       196 ~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e~  275 (291)
T d1s70b_         196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED  275 (291)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG
T ss_pred             cCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHH
Confidence            67789999999999999999999999999999999999999999999999999999999999999999999999999873


Q ss_pred             cchHHHHHHHHH
Q 026440          224 FRPILIDAAKAM  235 (238)
Q Consensus       224 ~~~~~~~~~~~~  235 (238)
                          ++++|+.+
T Consensus       276 ----~~~~L~~~  283 (291)
T d1s70b_         276 ----ILGYLEEL  283 (291)
T ss_dssp             ----GGHHHHHH
T ss_pred             ----HHHHHHHH
Confidence                44554443

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-37  Score=244.69  Aligned_cols=229  Identities=29%  Similarity=0.394  Sum_probs=194.9

Q ss_pred             hhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccc-------------
Q 026440            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV-------------   73 (238)
Q Consensus         7 ~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~-------------   73 (238)
                      +......++.|+..++.++++.|++.+  .+++..+..|.+|||+|+..|+.+++++|+..+..++.             
T Consensus       129 ~~~~~~~l~~a~~~~~~~~v~~ll~~~--~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~  206 (408)
T d1n11a_         129 TKKGFTPLHVAAKYGKVRVAELLLERD--AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAA  206 (408)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcC--CCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhh
Confidence            344555677777777777777777655  34555566677777777777777777777765544221             


Q ss_pred             -----------------cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHc
Q 026440           74 -----------------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR  136 (238)
Q Consensus        74 -----------------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~  136 (238)
                                       ....+..+.||++.|+..+..++++++++.+...+..+..|.+|++.++..++.+++++|+++
T Consensus       207 ~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~  286 (408)
T d1n11a_         207 KQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH  286 (408)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             ccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHC
Confidence                             223445678889999999999999999998888888888999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCch
Q 026440          137 GAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTV  216 (238)
Q Consensus       137 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tp  216 (238)
                      |++++..+..+.|||+.++..+..++++++++.|++++.++.+|.||||.|++.|+.+++++|+++|++++.+|.+|+||
T Consensus       287 g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~  366 (408)
T d1n11a_         287 GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTP  366 (408)
T ss_dssp             TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCH
T ss_pred             CCccccccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccccccchHHHHHHHHHhc
Q 026440          217 LGRASNDFRPILIDAAKAMLE  237 (238)
Q Consensus       217 l~~a~~~~~~~~~~~~~~~~~  237 (238)
                      ||+|++.++.+++++|+.+++
T Consensus       367 L~~A~~~~~~~iv~~L~~~~~  387 (408)
T d1n11a_         367 LAIAKRLGYISVTDVLKVVTD  387 (408)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHh
Confidence            999999999999999988875

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-36  Score=236.72  Aligned_cols=154  Identities=36%  Similarity=0.519  Sum_probs=119.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC-----------------
Q 026440           81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK-----------------  143 (238)
Q Consensus        81 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~-----------------  143 (238)
                      +.++++.|+..++.+++++|++++.+++..+..+.+||++|+..++.+++++|+.+|++++..                 
T Consensus       132 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~  211 (408)
T d1n11a_         132 GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQV  211 (408)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCH
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchh
Confidence            333444444444455555666666666666667778888888888888888887776665422                 


Q ss_pred             -------------------------------------------------CCCCCcHHHHHHhhCCHHHHHHHHhcCCCCC
Q 026440          144 -------------------------------------------------DKVGCTALHRGASTGNSALCELLIEEGAEVD  174 (238)
Q Consensus       144 -------------------------------------------------~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~  174 (238)
                                                                       +..|.+|++.|+..++.+++++|+++|++++
T Consensus       212 ~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~  291 (408)
T d1n11a_         212 EVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD  291 (408)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT
T ss_pred             hhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccc
Confidence                                                             3346677788888888888899988899988


Q ss_pred             ccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHHH
Q 026440          175 ATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKA  234 (238)
Q Consensus       175 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~  234 (238)
                      ..+..+.||||.++..+..++++++++.|++++.+|.+|.||||+|+++++.+++++|-+
T Consensus       292 ~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~  351 (408)
T d1n11a_         292 ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK  351 (408)
T ss_dssp             CCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            888888999999999999999999999999999999999999999999999888777643

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-36  Score=218.85  Aligned_cols=192  Identities=30%  Similarity=0.376  Sum_probs=178.2

Q ss_pred             chhhhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCc
Q 026440            4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWA   83 (238)
Q Consensus         4 ~~~~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t   83 (238)
                      ...+..++++||+|+..|+.+++++++...  ......+..+.++++.|+..++.+++++|++.+.+   ++..+..|.|
T Consensus        31 ~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d---~~~~d~~g~t  105 (223)
T d1uoha_          31 TRTDQDSRTALHWACSAGHTEIVEFLLQLG--VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQ---VNAVNQNGCT  105 (223)
T ss_dssp             GCCCTTSCCHHHHHHHHTCHHHHHHHHHHT--CCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTCCC
T ss_pred             cCcCCCCCCHHHHHHHhhhhcccccccccc--cccccccccccccccccccccccchhHHHhccCce---eEeeCCCCCc
Confidence            455677889999999999999999999887  34555667788999999999999999999998866   6778899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHH
Q 026440           84 PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC  163 (238)
Q Consensus        84 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  163 (238)
                      |||+|+..++.+++++|+++|++++.++..|.|||++|+..+..+++++|.+.+.+++..|..|.||||.|+..++.+++
T Consensus       106 pL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v  185 (223)
T d1uoha_         106 PLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEA  185 (223)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             hhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHh
Q 026440          164 ELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIR  201 (238)
Q Consensus       164 ~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  201 (238)
                      ++|+++|++++.+|.+|+||||+|. .++.+++++|++
T Consensus       186 ~~LL~~Gad~~~~d~~g~tpl~~A~-~~~~~i~~~Ll~  222 (223)
T d1uoha_         186 KLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMVE  222 (223)
T ss_dssp             HHHHHTTCCSCCCCTTSCCHHHHCC-TTHHHHHHHHHC
T ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHH-CCCHHHHhcccC
Confidence            9999999999999999999999985 689999999985

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-36  Score=219.03  Aligned_cols=192  Identities=26%  Similarity=0.326  Sum_probs=160.3

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhhc-ccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHH
Q 026440           44 DDRTLLHVAASCGHPEVVEILLSVD-ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAA  122 (238)
Q Consensus        44 ~~~t~L~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~  122 (238)
                      +|.||||+|+..|+.+++..|++.. ..+..++.++..|+||||+|+..++.+++++|++.|++++..+..|.+|++.++
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            5889999999999876555444321 223337778889999999999999999999999999999988889999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCC------CCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccc-cCCCcHHHHHHHhCCHHH
Q 026440          123 SKGWLKIVELLISRGAKINS------KDKVGCTALHRGASTGNSALCELLIEEGAEVDATD-KAGQTPLMNAVICYNKEV  195 (238)
Q Consensus       123 ~~~~~~~~~~l~~~~~~~~~------~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~~~~~~  195 (238)
                      ..++.++++.+++.+.....      ....+.||++.|+..++.+++.+++..|..++..+ .+|.||||+|+..|+.++
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~  160 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL  160 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHH
Confidence            99999999999987665432      33447899999999999999999999988887654 568999999999999999


Q ss_pred             HHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHHHH
Q 026440          196 ALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKAM  235 (238)
Q Consensus       196 ~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~  235 (238)
                      +++|+++|+|++.+|.+|+||+|+|+..++.++++++..+
T Consensus       161 v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~  200 (221)
T d1iknd_         161 VSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL  200 (221)
T ss_dssp             HHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTT
T ss_pred             HHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            9999999999999999999999999999998888888765

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.3e-35  Score=221.43  Aligned_cols=222  Identities=24%  Similarity=0.295  Sum_probs=180.5

Q ss_pred             ccChHHHHHHHcCChHHHHHHHHHHh------hhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCC
Q 026440            9 IKDKDLFKAAETGDSSTFKSLSKQQL------LKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (238)
Q Consensus         9 ~~~~~l~~a~~~g~~~~v~~l~~~~~------~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~   82 (238)
                      .+.++||+|+..|+.++|+.|+....      +.+++.+|..|+||||+|+..|+.+++++|++.|.+   ++..+..|.
T Consensus        32 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad---~n~~~~~g~  108 (277)
T d2fo1e1          32 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD---PTIYNKSER  108 (277)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTCC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccccccccccc---ccccccccc
Confidence            47788999999999999988876543      236778888899999999999999999999988877   556677889


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcC---CCCcccCCCCchHHHHHHHcCC---HHHHHHHHHcCCC--------CCCCCCCCC
Q 026440           83 APIHSAASIGNVTIVEMLLSKG---ADVNLKNDGGRTALHYAASKGW---LKIVELLISRGAK--------INSKDKVGC  148 (238)
Q Consensus        83 t~l~~a~~~~~~~~~~~Ll~~~---~~~~~~~~~~~~~l~~a~~~~~---~~~~~~l~~~~~~--------~~~~~~~~~  148 (238)
                      ||++.|+..++.++.+++...+   ..++..+..+.++.+.+...+.   ...+..+.+....        .+..+..+.
T Consensus       109 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  188 (277)
T d2fo1e1         109 SALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGR  188 (277)
T ss_dssp             CHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCC
T ss_pred             ccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCC
Confidence            9999999999888888887653   2344456667788888777654   3344444443222        233556789


Q ss_pred             cHHHHHHhhCCHHHHHHHH-hcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchH
Q 026440          149 TALHRGASTGNSALCELLI-EEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPI  227 (238)
Q Consensus       149 t~l~~a~~~~~~~~~~~Ll-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~  227 (238)
                      |||+.++..++.+++++++ ..+.+.+.++..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..++.+
T Consensus       189 t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~  268 (277)
T d2fo1e1         189 TALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHN  268 (277)
T ss_dssp             CTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHH
T ss_pred             CccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHH
Confidence            9999999999999998755 568889999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHH
Q 026440          228 LIDAAK  233 (238)
Q Consensus       228 ~~~~~~  233 (238)
                      ++++|.
T Consensus       269 iv~lL~  274 (277)
T d2fo1e1         269 IVDIFD  274 (277)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888775

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-34  Score=206.54  Aligned_cols=219  Identities=27%  Similarity=0.298  Sum_probs=191.8

Q ss_pred             ccChHHHHHHHcCChHHHHHHHHHHh--hhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHH
Q 026440            9 IKDKDLFKAAETGDSSTFKSLSKQQL--LKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH   86 (238)
Q Consensus         9 ~~~~~l~~a~~~g~~~~v~~l~~~~~--~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~   86 (238)
                      .++++||+|+..|+.++++.|++...  ..+++.++..|+||||+|+..|+.+++++|++.+..   .+.....+.++++
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~---~~~~~~~~~~~~~   78 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS---PMALDRHGQTAAH   78 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccc---ccccccccccccc
Confidence            47899999999999999999997543  346788899999999999999999999999998877   5566778999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCC----CcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCcHHHHHHhhCCHH
Q 026440           87 SAASIGNVTIVEMLLSKGAD----VNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN-SKDKVGCTALHRGASTGNSA  161 (238)
Q Consensus        87 ~a~~~~~~~~~~~Ll~~~~~----~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~-~~~~~~~t~l~~a~~~~~~~  161 (238)
                      .|....+.++++.+......    .+.......++++.+.........+.+.....+.. .....+.++++.|+..+...
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~  158 (228)
T d1k1aa_          79 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS  158 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             cccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhh
Confidence            99999999999988875432    23334467789999999999999999988766644 34556889999999999999


Q ss_pred             HHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHH
Q 026440          162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILID  230 (238)
Q Consensus       162 ~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~  230 (238)
                      +++++++++.+.+.++..|.||||+|+..|+.+++++|+++|+|++.+|.+|+||||+|+++++.++++
T Consensus       159 ~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         159 MVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            999999999999999999999999999999999999999999999999999999999999999876653

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=6.4e-35  Score=209.13  Aligned_cols=205  Identities=26%  Similarity=0.311  Sum_probs=185.1

Q ss_pred             hHHHHHHHHHHhhhhcCC-CCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHH
Q 026440           23 SSTFKSLSKQQLLKSLSL-RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL  101 (238)
Q Consensus        23 ~~~v~~l~~~~~~~~~~~-~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll  101 (238)
                      .|+|++|++.+.  +++. .|.+|.||||+||..|+.+++++|+..+..   ++..+..+.++++.++..++........
T Consensus         2 ~~~v~~Ll~~g~--din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~---~n~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1ot8a_           2 AQVISDLLAQGA--ELNATMDKTGETSLHLAARFARADAAKRLLDAGAD---ANSQDNTGRTPLHAAVAADAMGVFQILL   76 (209)
T ss_dssp             HHHHHHHHHHHH--HHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCC--CcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccc---cccccccccccccccccccccccccccc
Confidence            489999999983  5665 488999999999999999999999998877   6777889999999999999988777777


Q ss_pred             HcCCCCc-ccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCC
Q 026440          102 SKGADVN-LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG  180 (238)
Q Consensus       102 ~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  180 (238)
                      ....... .....+.++.+.+.........+.|.+.+++++..+..|.||++.++..+...+++.++..+.+++..+..|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g  156 (209)
T d1ot8a_          77 RNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKD  156 (209)
T ss_dssp             TCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             cccccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccccccccccccc
Confidence            6544332 334567888898888899999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHH
Q 026440          181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAA  232 (238)
Q Consensus       181 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~  232 (238)
                      .||||+|+..|+.+++++|+++|++++.+|..|+||||+|+++++.+++++|
T Consensus       157 ~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         157 ETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999999999999999999999999999999999999999999999876

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-34  Score=213.66  Aligned_cols=223  Identities=28%  Similarity=0.405  Sum_probs=185.3

Q ss_pred             cChHHHHHHHcCChHHHHHHHHHHhhhhcCCCC-CCCchHHHHHHHcCCHHHHHHHHhhcccccc---------------
Q 026440           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRN-DDDRTLLHVAASCGHPEVVEILLSVDESANV---------------   73 (238)
Q Consensus        10 ~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~-~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~---------------   73 (238)
                      +++.|+.|+++|++|+|++|++.+  .+++.++ ..|+||||+|+..|+.+++++|++.+.....               
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G--~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~   82 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGG--ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCC--CCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhc
Confidence            567899999999999999999987  4566554 4699999999999999999999986543211               


Q ss_pred             ---------------cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc----------CCCCchHHHHHHHcCCHH
Q 026440           74 ---------------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK----------NDGGRTALHYAASKGWLK  128 (238)
Q Consensus        74 ---------------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~----------~~~~~~~l~~a~~~~~~~  128 (238)
                                     ....+..+.++++.|+..++...++.++......+..          ...|.|||++|+..|+.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  162 (285)
T d1wdya_          83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  162 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred             CCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHH
Confidence                           1223346778888888888888888888765554332          335889999999999999


Q ss_pred             HHHHHHHc-CCCCCCCCCCCCcHHHHHHhhC----CHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhc-
Q 026440          129 IVELLISR-GAKINSKDKVGCTALHRGASTG----NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRH-  202 (238)
Q Consensus       129 ~~~~l~~~-~~~~~~~~~~~~t~l~~a~~~~----~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-  202 (238)
                      ++++|++. |++++..+..+.++...+...+    ...++++|+++|++++.++..|.||||.|+..++.+++++|++. 
T Consensus       163 ~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~  242 (285)
T d1wdya_         163 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE  242 (285)
T ss_dssp             HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSS
T ss_pred             HHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcC
Confidence            99999975 8889999888888777654433    35799999999999999999999999999999999999999985 


Q ss_pred             CCCCccCCCCCCchhhccccccchHHHHHHHH
Q 026440          203 GADVDVEDKEGYTVLGRASNDFRPILIDAAKA  234 (238)
Q Consensus       203 ~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~  234 (238)
                      |++++.+|.+|.||||+|++.++.+++++|.+
T Consensus       243 g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~  274 (285)
T d1wdya_         243 HIEINDTDSDGKTALLLAVELKLKKIAELLCK  274 (285)
T ss_dssp             SCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            89999999999999999999999888877643

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-34  Score=208.01  Aligned_cols=193  Identities=30%  Similarity=0.354  Sum_probs=169.9

Q ss_pred             cChHHHHHHHcCChHHHHHHHHHHh--hhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHH
Q 026440           10 KDKDLFKAAETGDSSTFKSLSKQQL--LKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS   87 (238)
Q Consensus        10 ~~~~l~~a~~~g~~~~v~~l~~~~~--~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~   87 (238)
                      ++++||+|+..|+.+.++.+++...  ..+++.++..|+||||+|+..|+.+++++|++.|.+   ++..+..|.+||+.
T Consensus         2 G~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d---~~~~d~~g~t~l~~   78 (221)
T d1iknd_           2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD---PELRDFRGNTPLHL   78 (221)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC---SCCCCTTCCCHHHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccc---cccccccccccccc
Confidence            6789999999999877776665432  346888899999999999999999999999998877   66778899999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCcc------cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHhhCCH
Q 026440           88 AASIGNVTIVEMLLSKGADVNL------KNDGGRTALHYAASKGWLKIVELLISRGAKINSKD-KVGCTALHRGASTGNS  160 (238)
Q Consensus        88 a~~~~~~~~~~~Ll~~~~~~~~------~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~t~l~~a~~~~~~  160 (238)
                      |+..++.++++.+++.+.....      ....|.||++.|+..++.+++++++..|..++..+ ..|.||||.|++.|+.
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~  158 (221)
T d1iknd_          79 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP  158 (221)
T ss_dssp             HHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             ccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccH
Confidence            9999999999999998654332      23458899999999999999999999999988765 5699999999999999


Q ss_pred             HHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCC
Q 026440          161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGAD  205 (238)
Q Consensus       161 ~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~  205 (238)
                      +++++|+++|++++.++..|.||||+|+..++.+++++|.+.+.+
T Consensus       159 ~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         159 DLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             HHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             HHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            999999999999999999999999999999999999999998655

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.2e-32  Score=196.12  Aligned_cols=186  Identities=31%  Similarity=0.324  Sum_probs=168.2

Q ss_pred             chHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc---cCCCCchHHHHHH
Q 026440           46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNL---KNDGGRTALHYAA  122 (238)
Q Consensus        46 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~---~~~~~~~~l~~a~  122 (238)
                      ++|||+||..|+.+.++.|+...  +..++.++.+|+||||+|+..|+.+++++|+++|++++.   .+..|.+|++++.
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~--~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~   78 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSK--PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   78 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHC--GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcC--CCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccc
Confidence            47999999999999999998743  334788899999999999999999999999999998764   4557899999999


Q ss_pred             HcCCHHHHHHHHHcCCCCC--CCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHH
Q 026440          123 SKGWLKIVELLISRGAKIN--SKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLI  200 (238)
Q Consensus       123 ~~~~~~~~~~l~~~~~~~~--~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll  200 (238)
                      ..+..++++.++..+...+  ..+..+.++++.++..++.+++++|+..+...+..+..|.||||+|+..++.+++++|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  158 (229)
T d1ixva_          79 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC  158 (229)
T ss_dssp             HHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccc
Confidence            9999999999998876544  45667889999999999999999999999999999999999999999999999999999


Q ss_pred             hcC-CCCccCCCCCCchhhccccccchHHHHHHH
Q 026440          201 RHG-ADVDVEDKEGYTVLGRASNDFRPILIDAAK  233 (238)
Q Consensus       201 ~~~-~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~  233 (238)
                      +.+ .+++.+|.+|+||||+|+.+++.+++++|.
T Consensus       159 ~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll  192 (229)
T d1ixva_         159 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV  192 (229)
T ss_dssp             TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             ccccccccccccccCCchhhhcccccHHHHHHHH
Confidence            987 678999999999999999999998888764

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.98  E-value=2e-31  Score=200.14  Aligned_cols=187  Identities=29%  Similarity=0.350  Sum_probs=170.6

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHc
Q 026440           45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASK  124 (238)
Q Consensus        45 ~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~  124 (238)
                      +.|+|+.||..|+.++|++|++.|.+   ++..+..|.||||+|+..|+.+++++|+++|.+....+..+.+|++.++..
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~Gad---vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~  116 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLERGAD---INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC  116 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCC---TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCC---CCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccc
Confidence            45999999999999999999999877   677889999999999999999999999999999888888999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhc---------------------------CCCCCccc
Q 026440          125 GWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEE---------------------------GAEVDATD  177 (238)
Q Consensus       125 ~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~---------------------------~~~~~~~~  177 (238)
                      ++.++++.|+++|...+..+..+.+++++|+..+..+.++.++..                           ..+....+
T Consensus       117 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (291)
T d1s70b_         117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA  196 (291)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCT
T ss_pred             cccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccccccccc
Confidence            999999999999999999999999999999998888888887753                           22334567


Q ss_pred             cCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHHHH
Q 026440          178 KAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKA  234 (238)
Q Consensus       178 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~  234 (238)
                      ..|.||||.|+..++.+++++|+++|++++.++.+|.||||+|+..++.+++++|.+
T Consensus       197 ~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~  253 (291)
T d1s70b_         197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE  253 (291)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHH
Confidence            789999999999999999999999999999999999999999999999888877643

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.9e-31  Score=179.86  Aligned_cols=153  Identities=30%  Similarity=0.398  Sum_probs=127.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCC
Q 026440           47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGW  126 (238)
Q Consensus        47 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~  126 (238)
                      ++||+|+..|+.+++++|++.|.+   ++..+..|.||||+|+ .++.+++++|++.|++++..+..+.++++.++..+.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d---~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~   78 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVN---VNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCC---TTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC---cCccCCcccccccccc-cccccccccccccccccccccccCcccccccccccc
Confidence            678888888888888888887766   5666778888888775 678888888888888888888888888888888888


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCC-CCCccccCCCcHHHHHHHhCCHHHHHHHHhcC
Q 026440          127 LKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA-EVDATDKAGQTPLMNAVICYNKEVALLLIRHG  203 (238)
Q Consensus       127 ~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  203 (238)
                      .+.++.+++.+.+++..+..+.+|++.|+..++.+++++|++++. +++.++.+|.||||+|+..++.+++++|+++|
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          79 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            888888888888888888888888888888888888888888765 67778888888888888888888888888876

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.4e-30  Score=190.79  Aligned_cols=204  Identities=26%  Similarity=0.297  Sum_probs=169.0

Q ss_pred             hccChHHHHHHHcCChHHHHHHHHHHhh-------------------------------hhcCCCCCCCchHHHHHHHcC
Q 026440            8 TIKDKDLFKAAETGDSSTFKSLSKQQLL-------------------------------KSLSLRNDDDRTLLHVAASCG   56 (238)
Q Consensus         8 ~~~~~~l~~a~~~g~~~~v~~l~~~~~~-------------------------------~~~~~~~~~~~t~L~~A~~~~   56 (238)
                      ..+.++||+|+..|+.++++.|++.+..                               ......+..+.++++.|+..+
T Consensus        37 ~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~  116 (285)
T d1wdya_          37 EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG  116 (285)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTT
T ss_pred             CCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhhhcccccccccCCCchhHHHHHhc
Confidence            3577899999999999999999875320                               112233455677888888888


Q ss_pred             CHHHHHHHHhhccccc-------ccccccCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCchHHHHHHHcC---
Q 026440           57 HPEVVEILLSVDESAN-------VVNAVDEEGWAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALHYAASKG---  125 (238)
Q Consensus        57 ~~~~~~~Ll~~~~~~~-------~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~---  125 (238)
                      +...++.++.......       ........|.|||++|+..++.+++++|+++ |++++..+..+.++...+...+   
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~  196 (285)
T d1wdya_         117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS  196 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTT
T ss_pred             chhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccch
Confidence            8888877776533321       1223345789999999999999999999975 7889888888888887766543   


Q ss_pred             -CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhc-CCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcC
Q 026440          126 -WLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEE-GAEVDATDKAGQTPLMNAVICYNKEVALLLIRHG  203 (238)
Q Consensus       126 -~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  203 (238)
                       ..+++++|+++|++++..+..|.||||.|+..++.+++++|++. |++++.+|.+|.||||+|++.++.+++++|+++|
T Consensus       197 ~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~G  276 (285)
T d1wdya_         197 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG  276 (285)
T ss_dssp             THHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence             45789999999999999999999999999999999999999985 9999999999999999999999999999999999


Q ss_pred             CCCccCCC
Q 026440          204 ADVDVEDK  211 (238)
Q Consensus       204 ~~~~~~~~  211 (238)
                      ||++.+|.
T Consensus       277 Ad~n~~d~  284 (285)
T d1wdya_         277 ASTDCGDL  284 (285)
T ss_dssp             SCSCCSSC
T ss_pred             CCCCcccC
Confidence            99999873

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.1e-30  Score=177.83  Aligned_cols=149  Identities=31%  Similarity=0.386  Sum_probs=85.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHH
Q 026440           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL  162 (238)
Q Consensus        83 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  162 (238)
                      |||+.|++.|+.+++++|+++|++.+ .+..|.||||+|+..++.++++.++.........+..+.++++.++...+.++
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANI   82 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCcccccccccccccccccccccccccccccccccccccccccccccee
Confidence            45555555555555555555555443 34455555555555555555555555544444444445555555555556666


Q ss_pred             HHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccccccchHHHHHH
Q 026440          163 CELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAA  232 (238)
Q Consensus       163 ~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~  232 (238)
                      ++++..++++++.++.+|.||||+|+..|+.+++++|+++|++++.+|.+|.||+++|+.+++.+++++|
T Consensus        83 ~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          83 VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            6666666666655666666666666666666666666666666666666666666666666666655554

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-30  Score=178.51  Aligned_cols=151  Identities=30%  Similarity=0.347  Sum_probs=144.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHH
Q 026440           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL  162 (238)
Q Consensus        83 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  162 (238)
                      ++||+|+..|+.+++++|+++|++++.++..|.||||+|+ .++.+++++|++.+++++..+..+.++++.++..+....
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            7999999999999999999999999999999999999885 789999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCC-CCccCCCCCCchhhccccccchHHHHHHHH
Q 026440          163 CELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGA-DVDVEDKEGYTVLGRASNDFRPILIDAAKA  234 (238)
Q Consensus       163 ~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~-~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~  234 (238)
                      +.+++..+.+++..+..|.+|+++|+..++.+++++|+++++ +++.+|.+|.||+|+|+..++.+++++|.+
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~  154 (156)
T d1ihba_          82 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA  154 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999999999999999999999999999986 899999999999999999999888877753

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=1.6e-29  Score=180.73  Aligned_cols=190  Identities=26%  Similarity=0.309  Sum_probs=172.0

Q ss_pred             hhhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHH
Q 026440            6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI   85 (238)
Q Consensus         6 ~~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l   85 (238)
                      .+..+.++||+||..|+.|++++|++.+  ..++..+..+.++++.++..++.+...........  ........+.++.
T Consensus        19 ~d~~G~t~L~~A~~~g~~e~v~~Ll~~g--~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   94 (209)
T d1ot8a_          19 MDKTGETSLHLAARFARADAAKRLLDAG--ADANSQDNTGRTPLHAAVAADAMGVFQILLRNRAT--NLNARMHDGTTPL   94 (209)
T ss_dssp             HHHHCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTC--CTTCCCTTCCCHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhhc--ccccccccccccccccccccccccccccccccccc--ccccccccccccc
Confidence            3678899999999999999999999886  46778889999999999999998887776653322  2344456788899


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHH
Q 026440           86 HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL  165 (238)
Q Consensus        86 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  165 (238)
                      +.+.........+.|.+.+.+++.++..|.||++.++..+...+++.+++.+.+++..|..|.||||.|+..|+.+++++
T Consensus        95 ~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~  174 (209)
T d1ot8a_          95 ILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKA  174 (209)
T ss_dssp             HHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             cccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHH
Q 026440          166 LIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL  199 (238)
Q Consensus       166 Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  199 (238)
                      |+++|++++.+|..|+||||+|++.|+.++|++|
T Consensus       175 Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         175 LLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999999999999999999999999999986

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5e-30  Score=175.14  Aligned_cols=151  Identities=26%  Similarity=0.393  Sum_probs=107.1

Q ss_pred             HHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCH
Q 026440           48 LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWL  127 (238)
Q Consensus        48 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~  127 (238)
                      .|+.||..|+.+++++|++.+  +..++..+..|+||||+|+. ++.+++++|++++.+++..+..|.+|++.++..++.
T Consensus         5 ~L~~Aa~~g~~~~vk~lL~~~--~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           5 RLSGAAARGDVQEVRRLLHRE--LVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTT--CCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHhC--CCCCCccCCCCCcccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            467777777777777776532  22255566677777777653 666777777777777776666777777777777777


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhc
Q 026440          128 KIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRH  202 (238)
Q Consensus       128 ~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  202 (238)
                      ++++++++.+++++..+..+.||||+|+..|+.+++++|+ .|++++.++.+|.||||+|+..|+.+++++|++|
T Consensus        82 ~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          82 DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            7777777777777777777777777777777777777665 5677777777777777777777777777777765

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.7e-30  Score=175.28  Aligned_cols=153  Identities=27%  Similarity=0.395  Sum_probs=141.1

Q ss_pred             ChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHH
Q 026440           11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS   90 (238)
Q Consensus        11 ~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~   90 (238)
                      .+.|+.|+..|+.+.|++|+.+. +.+++..|..|+||||+|+. |+.+++++|+..+.+   ++..+..|.+|++.++.
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~-~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~---~~~~~~~~~~~l~~~~~   77 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHRE-LVHPDALNRFGKTALQVMMF-GSTAIALELLKQGAS---PNVQDTSGTSPVHDAAR   77 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTT-CCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhC-CCCCCccCCCCCcccccccc-ccccccccccccccc---ccccccccccccccccc
Confidence            45799999999999999999876 56788899999999999875 889999999988777   56667889999999999


Q ss_pred             cCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhc
Q 026440           91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEE  169 (238)
Q Consensus        91 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  169 (238)
                      .++.++++++++.+++++.++..|.||||+|+..|+.+++++|+ .|++++..|..|.||||+|+..|+.+++++|+++
T Consensus        78 ~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          78 TGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999887 6889999999999999999999999999999875

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.8e-29  Score=171.88  Aligned_cols=150  Identities=34%  Similarity=0.461  Sum_probs=129.8

Q ss_pred             chHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcC
Q 026440           46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKG  125 (238)
Q Consensus        46 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~  125 (238)
                      .|||+.|++.|+.+++++|++.|..   .+ .+..|+||||+|+..++.+++..++............+.++++.++...
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~---~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAP---FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCC---CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCC---cc-cccCCCccccccccccccccccccccccccccccccccccccccccccc
Confidence            4888889999999999999888765   22 4778889999999888888888888887777666777788888888888


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHH
Q 026440          126 WLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL  199 (238)
Q Consensus       126 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  199 (238)
                      +.++++++.+.+++.+..+..|.||||+|+..|+.+++++|++.|++++.++.+|.||||+|+..|+.|++++|
T Consensus        79 ~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          79 HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            99999999999988888888899999999999999999999999999998899999999999999999998876

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=6e-29  Score=185.10  Aligned_cols=198  Identities=24%  Similarity=0.306  Sum_probs=168.4

Q ss_pred             ccchhhhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCC
Q 026440            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (238)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~   81 (238)
                      |++..+..++++||+|+..|+.++|++|++.+  .+++.++..|.|||++|+..++.++++++.........++..+..+
T Consensus        66 dvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~G--ad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  143 (277)
T d2fo1e1          66 DVNAMDCDENTPLMLAVLARRRRLVAYLMKAG--ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNG  143 (277)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTS
T ss_pred             CccccCCCCCeeeccccccccccccccccccc--cccccccccccccccchhhhcchhhhhhhhhccccccccccccccc
Confidence            45667788999999999999999999999987  5688889999999999999999999999987655444466677888


Q ss_pred             CcHHHHHHHcCCHH---HHHHHHHcCC--------CCcccCCCCchHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCc
Q 026440           82 WAPIHSAASIGNVT---IVEMLLSKGA--------DVNLKNDGGRTALHYAASKGWLKIVELLI-SRGAKINSKDKVGCT  149 (238)
Q Consensus        82 ~t~l~~a~~~~~~~---~~~~Ll~~~~--------~~~~~~~~~~~~l~~a~~~~~~~~~~~l~-~~~~~~~~~~~~~~t  149 (238)
                      .++.+.+...+..+   .+..+.+...        ..+..+..|.|+|+.++..++.+++++++ ..+.+.+..|..|.|
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~t  223 (277)
T d2fo1e1         144 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKT  223 (277)
T ss_dssp             CCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCC
T ss_pred             chhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCC
Confidence            99999988876533   4444444322        12334557899999999999999998755 568888889999999


Q ss_pred             HHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHh
Q 026440          150 ALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIR  201 (238)
Q Consensus       150 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  201 (238)
                      |||+|+..|+.+++++|+++|++++.+|.+|.||||+|++.|+.+++++|++
T Consensus       224 pL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         224 PIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999875

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.96  E-value=9.1e-32  Score=206.35  Aligned_cols=225  Identities=12%  Similarity=0.067  Sum_probs=152.8

Q ss_pred             hhhccChHHHHHHHcCChHHHHHH---HHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCC
Q 026440            6 DQTIKDKDLFKAAETGDSSTFKSL---SKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (238)
Q Consensus         6 ~~~~~~~~l~~a~~~g~~~~v~~l---~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~   82 (238)
                      ++..+.++|+.|+.+|+.+.++.+   ++.+  .+++.++..|+||||+||..|+.+++++|++.|.+... ...+..|+
T Consensus        86 ~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~--~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~-~~~~~~g~  162 (346)
T d2ajaa1          86 KGIKSEVICFVAAITGCSSALDTLCLLLTSD--EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM-AMIQAENY  162 (346)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--CC--SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHH-HHHSHHHH
T ss_pred             ccCCCCcHHHHHHHhCCHHHHHHHHHHHhCC--CcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccc-cccccCCC
Confidence            344567788999999998877763   4443  56777888889999999999999999999988776321 11234588


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCcc---cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-------CCCcHHH
Q 026440           83 APIHSAASIGNVTIVEMLLSKGADVNL---KNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK-------VGCTALH  152 (238)
Q Consensus        83 t~l~~a~~~~~~~~~~~Ll~~~~~~~~---~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~-------~~~t~l~  152 (238)
                      ||||+|+..|+.+++++|++.|+....   .+..+.+|++.|+..|+.+++++|++.|++++..+.       .+.+++.
T Consensus       163 t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  242 (346)
T d2ajaa1         163 HAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFI  242 (346)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHH
T ss_pred             ChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHH
Confidence            999999999999999999988866532   233466778888888999999999888766543221       1223444


Q ss_pred             HHHhhCCHHHHHHHHhcCCC--CCcccc-------CCCcHHHHHHHhCCHHHHHHHHhcCCC-----CccCCCCCCchhh
Q 026440          153 RGASTGNSALCELLIEEGAE--VDATDK-------AGQTPLMNAVICYNKEVALLLIRHGAD-----VDVEDKEGYTVLG  218 (238)
Q Consensus       153 ~a~~~~~~~~~~~Ll~~~~~--~~~~~~-------~~~t~l~~a~~~~~~~~~~~Ll~~~~~-----~~~~~~~g~tpl~  218 (238)
                      .+...+..+....+.....+  .+..+.       .+.++++.|+..+..+++++|++.+..     ....+.+|+||||
T Consensus       243 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~Lh  322 (346)
T d2ajaa1         243 ARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLR  322 (346)
T ss_dssp             HHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHH
T ss_pred             HHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHH
Confidence            44433333333322221111  111111       234778888888999999999987654     3344457899999


Q ss_pred             ccccccchHHHHHHH
Q 026440          219 RASNDFRPILIDAAK  233 (238)
Q Consensus       219 ~a~~~~~~~~~~~~~  233 (238)
                      +|++.|+.+++++|-
T Consensus       323 lA~~~Gn~e~v~lLL  337 (346)
T d2ajaa1         323 LALRLGNQGACALLL  337 (346)
T ss_dssp             HHHHHTCTTHHHHHT
T ss_pred             HHHHcCcHHHHHHHh
Confidence            999999988888764

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=3.6e-29  Score=162.45  Aligned_cols=109  Identities=30%  Similarity=0.438  Sum_probs=105.0

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHH
Q 026440          115 RTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE  194 (238)
Q Consensus       115 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  194 (238)
                      .|||++|++.|+.+++++|++.|++++..+..|.||+|+|+..++.+++++|+++|++++.++..|.||||+|+..++.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCccCCCCCCchhhccccc
Q 026440          195 VALLLIRHGADVDVEDKEGYTVLGRASND  223 (238)
Q Consensus       195 ~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~  223 (238)
                      ++++|+++|++++.+|.+|.||+++|...
T Consensus        83 ~v~~Ll~~Gad~~~~d~~G~t~l~~a~~~  111 (118)
T d1myoa_          83 CVKLLLSKGADKTVKGPDGLTALEATDNQ  111 (118)
T ss_dssp             HHHHHHTTCCCSSSSSSSTCCCCCTCSST
T ss_pred             hhhhhhcccccceeeCCCCCCHHHHHhHH
Confidence            99999999999999999999999999653

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.9e-26  Score=164.79  Aligned_cols=191  Identities=27%  Similarity=0.359  Sum_probs=164.5

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhhcc-cccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHH
Q 026440           43 DDDRTLLHVAASCGHPEVVEILLSVDE-SANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA  121 (238)
Q Consensus        43 ~~~~t~L~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a  121 (238)
                      ++|.||||+||..|+.++++.|++... .+..++..|..|+||||+|+..|+.+++++|+++|+..+.....+.++++.|
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            369999999999999999999986321 1222777889999999999999999999999999999999989999999999


Q ss_pred             HHcCCHHHHHHHHHcCCC----CCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCC-ccccCCCcHHHHHHHhCCHHHH
Q 026440          122 ASKGWLKIVELLISRGAK----INSKDKVGCTALHRGASTGNSALCELLIEEGAEVD-ATDKAGQTPLMNAVICYNKEVA  196 (238)
Q Consensus       122 ~~~~~~~~~~~l~~~~~~----~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~-~~~~~~~t~l~~a~~~~~~~~~  196 (238)
                      ...++.++++.+......    .+.......++++.+...........+.....+.. .....+.++++.|+..+..+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence            999999999888776433    23344556789999999999999999988766544 3456789999999999999999


Q ss_pred             HHHHhcCCCCccCCCCCCchhhccccccchHHHHHHH
Q 026440          197 LLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAK  233 (238)
Q Consensus       197 ~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~  233 (238)
                      ++++++|.+.+.+|..|.||+++|+..++.+++++|.
T Consensus       161 ~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll  197 (228)
T d1k1aa_         161 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLV  197 (228)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHH
T ss_pred             hhhhhhccccccccccCcchHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999988877764

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.2e-27  Score=180.16  Aligned_cols=172  Identities=19%  Similarity=0.157  Sum_probs=109.4

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCCCcHHHHHHHcCCH-------HHHHHHHHcCCCCcccCCCC
Q 026440           42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNV-------TIVEMLLSKGADVNLKNDGG  114 (238)
Q Consensus        42 ~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~-------~~~~~Ll~~~~~~~~~~~~~  114 (238)
                      |..|+||||+||..|+.+++++|++.|++   ++.+|..|+||||.|+..++.       ++++.+..   .....+..|
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad---~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~~~~d~~g  177 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSN---RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---CLILEDSMN  177 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---GGGEECTTC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---hhhhccccc
Confidence            67788888888888888888888887776   566677788888888876542       33343332   344556677


Q ss_pred             chHHHHHHHcCC----HHH--------HHHHHHcCCCCC-CCCCCCCcHHHHHHhhCCHHHH-----HHHHhcCCCCCcc
Q 026440          115 RTALHYAASKGW----LKI--------VELLISRGAKIN-SKDKVGCTALHRGASTGNSALC-----ELLIEEGAEVDAT  176 (238)
Q Consensus       115 ~~~l~~a~~~~~----~~~--------~~~l~~~~~~~~-~~~~~~~t~l~~a~~~~~~~~~-----~~Ll~~~~~~~~~  176 (238)
                      .||||+++..+.    ...        +.++...+.... .....+.++++.+........+     .+++.  ..++.+
T Consensus       178 ~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~in~~  255 (301)
T d1sw6a_         178 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA--NMLNAQ  255 (301)
T ss_dssp             CCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHH--HTTTCC
T ss_pred             CCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHh--cCccCC
Confidence            888887765432    222        233344333221 2222233333333222222211     12222  236778


Q ss_pred             ccCCCcHHHHHHHhCCHHHHHHHHhcCCCCccCCCCCCchhhccc
Q 026440          177 DKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS  221 (238)
Q Consensus       177 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~tpl~~a~  221 (238)
                      |.+|+||||+|++.|+.+++++|+++|++++++|+.|+|||++|+
T Consensus       256 D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         256 DSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            999999999999999999999999999999999999999999996

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.1e-28  Score=157.39  Aligned_cols=115  Identities=26%  Similarity=0.272  Sum_probs=58.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCC-cHHHHHHHhCCHH
Q 026440          116 TALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQ-TPLMNAVICYNKE  194 (238)
Q Consensus       116 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~-t~l~~a~~~~~~~  194 (238)
                      ++||.|+..|+.+++++|+++|++++..+..|.||+|.|+ .|+.+++++|+++|++++.++..+. ||||+|+..|+.+
T Consensus         5 ~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~   83 (125)
T d1bi7b_           5 DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLD   83 (125)
T ss_dssp             THHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHH
T ss_pred             hHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc
Confidence            4455555555555555555555555555555555554332 3455555555555555554444433 3555555555555


Q ss_pred             HHHHHHhcCCCCccCCCCCCchhhccccccchHHHHH
Q 026440          195 VALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDA  231 (238)
Q Consensus       195 ~~~~Ll~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~  231 (238)
                      ++++|+++|++++.+|..|+||+++|+.+++.+++++
T Consensus        84 ~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~  120 (125)
T d1bi7b_          84 TLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY  120 (125)
T ss_dssp             HHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             ccccccccccccccccCCCCCHHHHHHHcCCHHHHHH
Confidence            5555555555555555555555555555555444433

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.4e-27  Score=156.47  Aligned_cols=119  Identities=29%  Similarity=0.321  Sum_probs=88.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC-cHHHHHHhhCCH
Q 026440           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGC-TALHRGASTGNS  160 (238)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~-t~l~~a~~~~~~  160 (238)
                      .++||+|+..|+.+++++|+++|++++.++..|.||++.|+ .|+.+++++|+++|++++..+..+. +|||.|+..|+.
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~   82 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFL   82 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCH
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            45677777777777777777777777777777777777553 5777777777777777777766654 577777777777


Q ss_pred             HHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHh
Q 026440          161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIR  201 (238)
Q Consensus       161 ~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  201 (238)
                      +++++|+++|++++.+|..|.||||+|+..|+.+++++|++
T Consensus        83 ~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          83 DTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            77777777777777777778888888888888888877754

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.1e-26  Score=150.98  Aligned_cols=119  Identities=24%  Similarity=0.286  Sum_probs=103.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHH
Q 026440          116 TALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEV  195 (238)
Q Consensus       116 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  195 (238)
                      ++|+.|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|+++|++++..|.+|+||||+|+..|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            57888999999999999999999999998899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCccCCC-CCCchhh--ccccccchHHHHHHHH
Q 026440          196 ALLLIRHGADVDVEDK-EGYTVLG--RASNDFRPILIDAAKA  234 (238)
Q Consensus       196 ~~~Ll~~~~~~~~~~~-~g~tpl~--~a~~~~~~~~~~~~~~  234 (238)
                      +++|+++|++++.++. .|.||++  .+...++.+++++|..
T Consensus        83 v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          83 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             HHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            9999999999987764 4777654  4567788888888764

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=7.6e-28  Score=156.10  Aligned_cols=105  Identities=35%  Similarity=0.496  Sum_probs=81.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHH
Q 026440           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL  162 (238)
Q Consensus        83 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  162 (238)
                      |||++|++.|+.+++++|+++|++++.++..|.||||+|+..|+.+++++++++|++++..|..|.||||+|+..++.++
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~   83 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSC   83 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHH
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchhh
Confidence            57777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHhcCCCCCccccCCCcHHHHH
Q 026440          163 CELLIEEGAEVDATDKAGQTPLMNA  187 (238)
Q Consensus       163 ~~~Ll~~~~~~~~~~~~~~t~l~~a  187 (238)
                      +++|+++|++++.+|..|.||||+|
T Consensus        84 v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          84 VKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             hhhhhcccccceeeCCCCCCHHHHH
Confidence            7777777777777777777777776

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-25  Score=148.29  Aligned_cols=120  Identities=31%  Similarity=0.384  Sum_probs=85.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHH
Q 026440           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL  162 (238)
Q Consensus        83 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  162 (238)
                      ++|+.|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|++.|++++..|..|+||||+|+.+|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            45677777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHhcCCCCCcccc-CCCcHHHHH--HHhCCHHHHHHHHhc
Q 026440          163 CELLIEEGAEVDATDK-AGQTPLMNA--VICYNKEVALLLIRH  202 (238)
Q Consensus       163 ~~~Ll~~~~~~~~~~~-~~~t~l~~a--~~~~~~~~~~~Ll~~  202 (238)
                      +++|+++|++++..+. .+.||++++  +..|+.+++++|++.
T Consensus        83 v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          83 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            7777777777765543 466666544  455667777777653

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=6.5e-28  Score=184.76  Aligned_cols=201  Identities=13%  Similarity=0.074  Sum_probs=144.5

Q ss_pred             ccchhhhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCHHHHHHHHhhcccccccccccCCC
Q 026440            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (238)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~   81 (238)
                      +++..+..+.++||+|+++|+.++|++|++.+...+....+..|.||||+|+..|+.+++++|++.+..+...+..+..+
T Consensus       118 ~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~  197 (346)
T d2ajaa1         118 IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENY  197 (346)
T ss_dssp             SCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHH
T ss_pred             cccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCC
Confidence            34566777889999999999999999999987322222334568999999999999999999999887655455556677


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCcccC-------CCCchHHHHHHHcCCHHHHHHHHHcCCC--CCCCCC-------
Q 026440           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKN-------DGGRTALHYAASKGWLKIVELLISRGAK--INSKDK-------  145 (238)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-------~~~~~~l~~a~~~~~~~~~~~l~~~~~~--~~~~~~-------  145 (238)
                      .||++.|+..|+.+++++|++.|++++..+       ..+.+++..+...+..+....+......  .+..+.       
T Consensus       198 ~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~  277 (346)
T d2ajaa1         198 YAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGF  277 (346)
T ss_dssp             HHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHH
T ss_pred             cchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccc
Confidence            889999999999999999999887654322       2233555555444443333333222211  111111       


Q ss_pred             CCCcHHHHHHhhCCHHHHHHHHhcCCC-----CCccccCCCcHHHHHHHhCCHHHHHHHHhc
Q 026440          146 VGCTALHRGASTGNSALCELLIEEGAE-----VDATDKAGQTPLMNAVICYNKEVALLLIRH  202 (238)
Q Consensus       146 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~-----~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  202 (238)
                      ...++++.+...+..+++++|++.+..     ....+.+|+||||+|++.|+.+++++|++.
T Consensus       278 ~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         278 YMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             hhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            123577788888999999999987653     233445789999999999999999999864

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=4.7e-25  Score=165.84  Aligned_cols=172  Identities=15%  Similarity=0.166  Sum_probs=120.3

Q ss_pred             hhccChHHHHHHHcCChHHHHHHHHHHhhhhcCCCCCCCchHHHHHHHcCCH-------HHHHHHHhhcccccccccccC
Q 026440            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHP-------EVVEILLSVDESANVVNAVDE   79 (238)
Q Consensus         7 ~~~~~~~l~~a~~~g~~~~v~~l~~~~~~~~~~~~~~~~~t~L~~A~~~~~~-------~~~~~Ll~~~~~~~~~~~~~~   79 (238)
                      +..++++||+|+..|+.++|+.|++.+  .+++.+|..|+||||.||..++.       ++++++..   .   ....+.
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~g--ad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~---~~~~d~  175 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHG--SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---C---LILEDS  175 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---G---GGEECT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---h---hhhccc
Confidence            567889999999999999999999887  57888999999999999987652       44444432   2   456678


Q ss_pred             CCCcHHHHHHHcCC----HH--------HHHHHHHcCCCCc-ccCCCCchHHHHHHHcCCHHH-----HHHHHHcCCCCC
Q 026440           80 EGWAPIHSAASIGN----VT--------IVEMLLSKGADVN-LKNDGGRTALHYAASKGWLKI-----VELLISRGAKIN  141 (238)
Q Consensus        80 ~~~t~l~~a~~~~~----~~--------~~~~Ll~~~~~~~-~~~~~~~~~l~~a~~~~~~~~-----~~~l~~~~~~~~  141 (238)
                      .|+||||.++..+.    ..        ++.++.+.+.... .....+.++++.+........     +..++..  .+|
T Consensus       176 ~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~in  253 (301)
T d1sw6a_         176 MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN--MLN  253 (301)
T ss_dssp             TCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHH--TTT
T ss_pred             ccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhc--Ccc
Confidence            99999998876543    22        3445555543332 223334444444433322121     2233333  267


Q ss_pred             CCCCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHH
Q 026440          142 SKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV  188 (238)
Q Consensus       142 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~  188 (238)
                      .+|..|+||||+|++.|+.+++++|+++|++++.+|..|.|||++|+
T Consensus       254 ~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         254 AQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            78999999999999999999999999999999999999999999985

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=3.7e-24  Score=144.49  Aligned_cols=122  Identities=25%  Similarity=0.329  Sum_probs=105.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCccc------CCCCchHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 026440           84 PIHSAASIGNVTIVEMLLSKGADVNLK------NDGGRTALHYAASK---GWLKIVELLISRGAKINSKDKVGCTALHRG  154 (238)
Q Consensus        84 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~------~~~~~~~l~~a~~~---~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a  154 (238)
                      .|..|++.++...+..++..|.++...      +..|.||||+|+..   +..+++++|+++|++++..|..|.||||+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A   88 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccc
Confidence            456778889998888888888776544      45688999999874   578899999999999999999999999999


Q ss_pred             HhhCCHHHHHHHHhcCCCCCccccCCCcHHHHHHHhCCHHHHHHHHhcCCC
Q 026440          155 ASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGAD  205 (238)
Q Consensus       155 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~  205 (238)
                      +..|+.+++++|+++|++++.+|..|.||||+|++.++.+++++|++.++.
T Consensus        89 ~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          89 CLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             cccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999999999999999886543

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.6e-23  Score=141.39  Aligned_cols=124  Identities=19%  Similarity=0.179  Sum_probs=90.0

Q ss_pred             HHHHHHHcCCHHHHHHHHhhccccc---ccccccCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCcccCCCCchHHHHH
Q 026440           48 LLHVAASCGHPEVVEILLSVDESAN---VVNAVDEEGWAPIHSAASI---GNVTIVEMLLSKGADVNLKNDGGRTALHYA  121 (238)
Q Consensus        48 ~L~~A~~~~~~~~~~~Ll~~~~~~~---~~~~~~~~~~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a  121 (238)
                      .|+.|+..++...+..++..|.+..   .....+..|+||||+|+..   ++.+++++|+++|++++.++..|.||||+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A   88 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccc
Confidence            4567777777777777766554321   1222345677888887764   567778888888888877777788888888


Q ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHhcCC
Q 026440          122 ASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA  171 (238)
Q Consensus       122 ~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~  171 (238)
                      +..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|++.+.
T Consensus        89 ~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          89 CLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            88888888888888888888777788888888888888888888777543