Citrus Sinensis ID: 026461

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MTDKAKQAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Secondary Structure (PSIPRED)
ccHHHHHHHccccccccHHHHHHHHHccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccEEEEEccHHcHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHcccccccccEEEEEccccccHHHHHHHHccccccEEEEEcccccccEEcccccccccccccHHHHHHHHHHHHHHcccccEEEEEEccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHccccHHHHHHHHHHHHHHccHHEEEEccccHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHccccccEEEccccHHHHHHHHHHcccccccEEEEEEEcccHcHHHHHHHHHHHHccccEEEEEcccccccEcccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHcc
Coil and Loop (DISEMBL)
MTDKAKQAAsskgllqseDLYRYILEtsvyprepeplkkirdvtadhpwammgtapDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTaltipedgqitaidvnretyeiGLPIIKKAGVDHKINFIESEALSVLDQLLKYsenegsfdyafvdadkdnyCNYHERLMKLLKVGGiavydntlwggtvavpeeqvpdhfrgsSRQAILDLNrsladdprvqlSHVALGDGITICRRIF
Flexible Loop (DISEMBL)
mtdkakqaasskgllqsedLYRYILETsvyprepeplkKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSladdprvqlshvalgdgiticrrif
Low Complexity Region (SEG)
MTDKAKQAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Disordered region (IsUnstruct)
******************DLYRYILETSVYPR****LKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQV**********AILDLNRSLADDPRVQLSHVALGDGITICRR**
Disordered Region (DISOPRED)
*******************LYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Disordered Region (DISEMBL)
************GLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Disordered Region (DISPRO)
*************LLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTDKAKQAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	238	2.2.26 [Sep-21-2011]
Q9C5D7	232	Probable caffeoyl-CoA O-m	yes	no	0.953	0.978	0.688	3e-91
O65162	254	Caffeoyl-CoA O-methyltran	N/A	no	0.970	0.909	0.584	7e-81
Q40313	247	Caffeoyl-CoA O-methyltran	N/A	no	0.970	0.935	0.593	4e-80
O49499	259	Caffeoyl-CoA O-methyltran	no	no	0.970	0.891	0.593	5e-80
O65862	247	Caffeoyl-CoA O-methyltran	yes	no	0.970	0.935	0.597	7e-80
Q43095	247	Caffeoyl-CoA O-methyltran	N/A	no	0.970	0.935	0.597	8e-80
O04899	240	Caffeoyl-CoA O-methyltran	N/A	no	0.970	0.962	0.593	1e-79
Q41720	245	Caffeoyl-CoA O-methyltran	N/A	no	0.991	0.963	0.582	6e-79
O65922	247	Caffeoyl-CoA O-methyltran	no	no	0.970	0.935	0.580	6e-79
Q9ZTT5	259	Caffeoyl-CoA O-methyltran	N/A	no	0.974	0.895	0.573	1e-78

>sp|Q9C5D7|CAMT3_ARATH Probable caffeoyl-CoA O-methyltransferase At4g26220 OS=Arabidopsis thaliana GN=At4g26220 PE=2 SV=1

 Score =  334 bits (857), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 157/228 (68%), Positives = 195/228 (85%), Gaps = 1/228 (0%)

Query: 11  SKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVN 70
           +KGLL+SE+LY+YILETSVYPREPE L+++R++T +HP A M TAPDAGQLM MLL LVN
Sbjct: 6   AKGLLKSEELYKYILETSVYPREPEVLRELRNITHNHPQAGMATAPDAGQLMGMLLNLVN 65

Query: 71  AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 130
           A+KTIE+GVFTGYSLLLTALT+PEDG++ AID+NR++YEIGLP+IKKAGV+HKI+F ESE
Sbjct: 66  ARKTIEVGVFTGYSLLLTALTLPEDGKVIAIDMNRDSYEIGLPVIKKAGVEHKIDFKESE 125

Query: 131 ALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAV 190
           AL  LD+LL    NEG FD+AFVDADK NY NYHERL++L+KVGGI VYDNTLWGG+VA 
Sbjct: 126 ALPALDELLNNKVNEGGFDFAFVDADKLNYWNYHERLIRLIKVGGIIVYDNTLWGGSVAE 185

Query: 191 PEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF 238
           P+   P+ +R   ++A L+LN+ L+ D RVQ+S  ALGDGITICRR++
Sbjct: 186 PDSSTPE-WRIEVKKATLELNKKLSADQRVQISQAALGDGITICRRLY 232

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 0EC: 4

>sp|O65162|CAMT_MESCR Caffeoyl-CoA O-methyltransferase OS=Mesembryanthemum crystallinum PE=2 SV=1

 Score =  300 bits (768), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 135/231 (58%), Positives = 182/231 (78%)

Query: 7   QAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLL 66
           Q    K LLQS+ L++YILETSVYPREPEP+K++RD+TA HPW +M T+ D GQ + MLL
Sbjct: 23  QEVGHKSLLQSDALFQYILETSVYPREPEPMKELRDITAKHPWNLMTTSADEGQFLNMLL 82

Query: 67  RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF 126
           +L+NAK TIEIGV+TGYSLL +AL +P+DG+I A+D+NRE YE+GLP+I+KAGV HKI+F
Sbjct: 83  KLINAKNTIEIGVYTGYSLLASALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDF 142

Query: 127 IESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGG 186
            E  AL VLD L++ ++N GSFD+AFVDADKDNY NYH+RL+ L+K+GG+  YDNTLW G
Sbjct: 143 REGPALPVLDLLIEDAKNHGSFDFAFVDADKDNYGNYHKRLIDLVKIGGVIGYDNTLWNG 202

Query: 187 TVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237
           +VA P +     +    R  +++ N+++A DPRV++  + +GDGIT+CRRI
Sbjct: 203 SVAAPADAPMRKYVRYYRDFVMEFNKAIAADPRVEICQLPVGDGITLCRRI 253

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Mesembryanthemum crystallinum (taxid: 3544)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q40313|CAMT_MEDSA Caffeoyl-CoA O-methyltransferase OS=Medicago sativa GN=CCOMT PE=1 SV=1

 Score =  297 bits (761), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 137/231 (59%), Positives = 181/231 (78%)

Query: 7   QAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLL 66
           Q    K LLQS+ LY+YILETSV+PRE E +K++R+VTA HPW +M T+ D GQ ++MLL
Sbjct: 16  QEVGHKSLLQSDALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLL 75

Query: 67  RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF 126
           +L+NAK T+EIGV+TGYSLL TAL IPEDG+I A+D+N+E YE+GLP+IKKAGVDHKI+F
Sbjct: 76  KLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDF 135

Query: 127 IESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGG 186
            E  AL VLD+++K  +N GS+D+ FVDADKDNY NYH+RL+ L+KVGG+  YDNTLW G
Sbjct: 136 REGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNG 195

Query: 187 TVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237
           +V  P +     +    R  +L+LN++LA DPR+++  + +GDGITICRRI
Sbjct: 196 SVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRRI 246

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O49499|CAMT4_ARATH Caffeoyl-CoA O-methyltransferase 1 OS=Arabidopsis thaliana GN=CCOAOMT1 PE=1 SV=1

 Score =  297 bits (760), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 137/231 (59%), Positives = 180/231 (77%)

Query: 7   QAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLL 66
           Q    K LLQS+DLY+YILETSVYPREPE +K++R+VTA HPW +M T+ D GQ + ML+
Sbjct: 28  QEVGHKSLLQSDDLYQYILETSVYPREPESMKELREVTAKHPWNIMTTSADEGQFLNMLI 87

Query: 67  RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF 126
           +LVNAK T+EIGV+TGYSLL TAL +PEDG+I A+DVNRE YE+GLPII+KAGV HKI+F
Sbjct: 88  KLVNAKNTMEIGVYTGYSLLATALALPEDGKILAMDVNRENYELGLPIIEKAGVAHKIDF 147

Query: 127 IESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGG 186
            E  AL VLD+++   +N G++D+ FVDADKDNY NYH+RL+ L+K+GG+  YDNTLW G
Sbjct: 148 REGPALPVLDEIVADEKNHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNG 207

Query: 187 TVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237
           +V  P +     +    R  +L+LN++LA DPR+++  + +GDGITICRRI
Sbjct: 208 SVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRI 258

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O65862|CAMT1_POPTR Caffeoyl-CoA O-methyltransferase 1 OS=Populus trichocarpa GN=CCOAOMT1 PE=2 SV=1

 Score =  296 bits (759), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 138/231 (59%), Positives = 180/231 (77%)

Query: 7   QAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLL 66
           Q    K LLQS+ LY+YILETSVYPREPE +K++R+VTA HPW +M T+ D GQ + MLL
Sbjct: 16  QEVGHKSLLQSDALYQYILETSVYPREPECMKELREVTAKHPWNIMTTSADEGQFLNMLL 75

Query: 67  RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF 126
           +LVNAK T+EIGV+TGYSLL TAL IPEDG+I A+D+NRE YE+GLP+I+KAGV HKI+F
Sbjct: 76  KLVNAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINRENYELGLPVIQKAGVAHKIDF 135

Query: 127 IESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGG 186
            E  AL VLDQ+++  +  GSFD+ FVDADKDNY NYH+RL++L+KVGG+  YDNTLW G
Sbjct: 136 KEGPALPVLDQMIEDGKCHGSFDFIFVDADKDNYINYHKRLIELVKVGGLIGYDNTLWNG 195

Query: 187 TVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237
           +V  P +     +    R  +L+LN++LA DPR+++  + +GDGIT+CRRI
Sbjct: 196 SVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 246

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Populus trichocarpa (taxid: 3694)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q43095|CAMT_POPTM Caffeoyl-CoA O-methyltransferase OS=Populus tremuloides PE=2 SV=1

 Score =  296 bits (758), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 138/231 (59%), Positives = 180/231 (77%)

Query: 7   QAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLL 66
           Q    K LLQS+ LY+YILETSVYPREPE +K++R+VTA HPW +M T+ D GQ + MLL
Sbjct: 16  QEVGHKSLLQSDALYQYILETSVYPREPECMKELREVTAKHPWNIMTTSADEGQFLNMLL 75

Query: 67  RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF 126
           +LVNAK T+EIGV+TGYSLL TAL IPEDG+I A+D+NRE YE+GLP+I+KAGV HKI+F
Sbjct: 76  KLVNAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINRENYELGLPVIQKAGVAHKIDF 135

Query: 127 IESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGG 186
            E  AL VLDQ+++  +  GSFD+ FVDADKDNY NYH+RL++L+KVGG+  YDNTLW G
Sbjct: 136 KEGPALPVLDQMIEDGKYHGSFDFIFVDADKDNYINYHKRLIELVKVGGLIGYDNTLWNG 195

Query: 187 TVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237
           +V  P +     +    R  +L+LN++LA DPR+++  + +GDGIT+CRRI
Sbjct: 196 SVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 246

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Populus tremuloides (taxid: 3693)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O04899|CAMT5_TOBAC Caffeoyl-CoA O-methyltransferase 5 OS=Nicotiana tabacum GN=CCOAOMT5 PE=2 SV=1

 Score =  295 bits (756), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 137/231 (59%), Positives = 179/231 (77%)

Query: 7   QAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLL 66
           Q    K LLQS+ LY+YILETSVYPREPE +K++R+VTA HPW +M T+ D GQ + MLL
Sbjct: 9   QEVGHKSLLQSDALYQYILETSVYPREPESMKELREVTAKHPWNLMTTSADEGQFLNMLL 68

Query: 67  RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF 126
           +L+NAK T+EIGV+TGYSLL TAL IP+DG+I A+D+NRE YEIGLPII+KAGV HKI F
Sbjct: 69  KLINAKNTMEIGVYTGYSLLATALAIPDDGKILAMDINRENYEIGLPIIEKAGVAHKIEF 128

Query: 127 IESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGG 186
            E  AL VLDQL++  +N G++D+ FVDADKDNY NYH+R++ L+KVGG+  YDNTLW G
Sbjct: 129 REGPALPVLDQLVEDKKNHGTYDFIFVDADKDNYINYHKRIIDLVKVGGLIGYDNTLWNG 188

Query: 187 TVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237
           +V  P +     +    R  +L+LN++LA DPR+++  + +GDGIT+CRRI
Sbjct: 189 SVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 239

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers. Methylates 5-hydroxyferulolyl-CoA more efficiently than caffeoyl-CoA.

Nicotiana tabacum (taxid: 4097)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q41720|CAMT_ZINEL Caffeoyl-CoA O-methyltransferase OS=Zinnia elegans GN=CCOAOMT PE=2 SV=1

 Score =  293 bits (751), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 138/237 (58%), Positives = 181/237 (76%), Gaps = 1/237 (0%)

Query: 2   TDKAK-QAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQ 60
           T  AK Q    K LLQS+ LY+YILETSVYPREP+P+K++R +TA HPW +M T+ D GQ
Sbjct: 8   TQPAKHQEVGHKSLLQSDALYQYILETSVYPREPQPMKELRRITAKHPWNLMTTSADEGQ 67

Query: 61  LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV 120
            + +LL+L+NAK T+EIGV+TGYSLL TAL +PEDG+I A+D+NRE YEIGLPII+KAGV
Sbjct: 68  FLNLLLKLINAKNTMEIGVYTGYSLLSTALALPEDGKILALDINRENYEIGLPIIQKAGV 127

Query: 121 DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180
            HKI+F E  AL +LDQ+L+  +  GSFD+ FVDADKDNY NYH+RL+ L+K GG+  YD
Sbjct: 128 AHKIDFREGPALPLLDQMLQDEKCHGSFDFIFVDADKDNYLNYHKRLIDLVKFGGVIGYD 187

Query: 181 NTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237
           NTLW G++  P +     +    R  +L+LN++LA DPRV++  + +GDGIT+CRRI
Sbjct: 188 NTLWNGSLVAPADAPLRKYVRYYRDFVLELNKALAVDPRVEICQLPVGDGITLCRRI 244

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Zinnia elegans (taxid: 34245)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O65922|CAMT2_POPTR Caffeoyl-CoA O-methyltransferase 2 OS=Populus trichocarpa GN=CCOAOMT2 PE=2 SV=1

 Score =  293 bits (751), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 134/231 (58%), Positives = 180/231 (77%)

Query: 7   QAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLL 66
           Q    K LLQS+ LY+YILETSVYPREPE +K++R++TA HPW +M T+ D GQ + MLL
Sbjct: 16  QEVGHKSLLQSDALYQYILETSVYPREPECMKELRELTAKHPWNIMTTSADEGQFLNMLL 75

Query: 67  RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF 126
           +L+NAK T+EIGVFTGYSLL TAL IPEDG+I A+D+NRE YE+GLP+I+KAG++HKI F
Sbjct: 76  KLINAKNTMEIGVFTGYSLLATALAIPEDGKILAMDINRENYELGLPVIQKAGLEHKIEF 135

Query: 127 IESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGG 186
            E  AL VLDQ+++  +  G++D+ FVDADKDNY NYH+RL++L+KVGG+  YDNTLW G
Sbjct: 136 KEGPALPVLDQMIEDGKYHGTYDFIFVDADKDNYINYHKRLIELVKVGGLIGYDNTLWNG 195

Query: 187 TVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237
           +V  P +     +    R  +L+LN++LA DPR+++  + +GDGIT+CRRI
Sbjct: 196 SVVAPADAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 246

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Populus trichocarpa (taxid: 3694)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q9ZTT5|CAMT_PINTA Caffeoyl-CoA O-methyltransferase OS=Pinus taeda GN=CCOAOMT PE=2 SV=1

 Score =  292 bits (748), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 133/232 (57%), Positives = 178/232 (76%)

Query: 7   QAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLL 66
           Q    K LLQS+ LY+YILETSVYPREPEP+K++  VTA HPW +M T+ D GQ + +LL
Sbjct: 28  QEVGHKSLLQSDALYQYILETSVYPREPEPMKELPRVTAKHPWNLMTTSADEGQFLGLLL 87

Query: 67  RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF 126
           +L+NAK T+EIGV+TGYSLL TAL +P+DG+I A+D+NRE Y+IGLPII+KAGV HKI+F
Sbjct: 88  KLINAKNTMEIGVYTGYSLLSTALALPDDGKILAMDINRENYDIGLPIIEKAGVAHKIDF 147

Query: 127 IESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGG 186
            E  AL VLD+LLK  +  GSFD+ FVD DKDNY NYH+RL+ L+KVGG+  YDNTLW G
Sbjct: 148 REGPALPVLDELLKNEDMHGSFDFVFVDRDKDNYLNYHKRLIDLVKVGGLIAYDNTLWNG 207

Query: 187 TVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF 238
           +V  P +     +    R  +++LN++LA DPR+++S + + DG+T+CRR++
Sbjct: 208 SVVAPPDAPLRKYVRYYRDFVMELNKALAVDPRIEISQIPVLDGVTLCRRVY 259

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Pinus taeda (taxid: 3352)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
255546215	228	o-methyltransferase, putative [Ricinus c	0.953	0.995	0.736	4e-96
255546213	228	o-methyltransferase, putative [Ricinus c	0.945	0.986	0.730	6e-96
224122628	236	predicted protein [Populus trichocarpa]	0.987	0.995	0.724	7e-96
297738705	236	unnamed protein product [Vitis vinifera]	0.983	0.991	0.723	5e-95
225444995	282	PREDICTED: probable caffeoyl-CoA O-methy	0.991	0.836	0.717	1e-94
147799759	1625	hypothetical protein VITISV_020117 [Viti	0.949	0.139	0.723	6e-92
297803474	238	hypothetical protein ARALYDRAFT_913940 [	0.987	0.987	0.686	8e-92
225444997	242	PREDICTED: probable caffeoyl-CoA O-methy	1.0	0.983	0.690	9e-92
147840665	285	hypothetical protein VITISV_007881 [Viti	1.0	0.835	0.690	1e-91
297738706	295	unnamed protein product [Vitis vinifera]	0.991	0.8	0.697	3e-91

>gi|255546215|ref|XP_002514167.1| o-methyltransferase, putative [Ricinus communis] gi|223546623|gb|EEF48121.1| o-methyltransferase, putative [Ricinus communis]

 Score =  356 bits (914), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 168/228 (73%), Positives = 203/228 (89%), Gaps = 1/228 (0%)

Query: 11  SKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVN 70
           SKGLL+SE+LY+Y+LE SVYPRE EPL+++R++TA HP A M T+PDAGQL+A+LL+LVN
Sbjct: 2   SKGLLKSEELYQYVLEASVYPRETEPLRELRNITASHPRAGMATSPDAGQLIALLLQLVN 61

Query: 71  AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 130
           AKKTIE+GVFTGYSLLLTAL+IPEDG+ITAIDVNRETY+IGLPII+KAGV+HKI+F+ESE
Sbjct: 62  AKKTIEVGVFTGYSLLLTALSIPEDGKITAIDVNRETYDIGLPIIRKAGVEHKIDFMESE 121

Query: 131 ALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAV 190
           AL VLD+LLK   NEGSFD+AFVDADK NY NYHERL+KLLKVGGI VYDNTLWGGTVA+
Sbjct: 122 ALPVLDKLLKDHGNEGSFDFAFVDADKINYWNYHERLLKLLKVGGIVVYDNTLWGGTVAI 181

Query: 191 PEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF 238
           PEE+ P+  R   RQ  ++LN+ LA D R+Q+SH +LGDGITICRR++
Sbjct: 182 PEEEAPEAMR-MGRQLTIELNKLLAADSRIQISHASLGDGITICRRLY 228

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546213|ref|XP_002514166.1| o-methyltransferase, putative [Ricinus communis] gi|223546622|gb|EEF48120.1| o-methyltransferase, putative [Ricinus communis]

 Score =  355 bits (912), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 165/226 (73%), Positives = 200/226 (88%), Gaps = 1/226 (0%)

Query: 12  KGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNA 71
           KGLL+SE+LY+Y+LETSV+PREPEPL+++R++TA+HPWA M T+PDAGQ MAMLL+LVNA
Sbjct: 3   KGLLKSEELYQYVLETSVFPREPEPLRELRNITANHPWAKMATSPDAGQFMAMLLQLVNA 62

Query: 72  KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 131
           KKTIE+GVFTGYSLLLTAL+IPEDG+I AIDV+RE YEIGLPII+KAGV+HKI+F+ESEA
Sbjct: 63  KKTIEVGVFTGYSLLLTALSIPEDGKIVAIDVDREAYEIGLPIIRKAGVEHKIDFMESEA 122

Query: 132 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVP 191
           L VLD+LLK   NE SFD+AFVDADK NY NYHERL+KL+KVGGI +YDN+LW G+VAVP
Sbjct: 123 LPVLDKLLKEHGNESSFDFAFVDADKINYWNYHERLLKLVKVGGIVIYDNSLWRGSVAVP 182

Query: 192 EEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237
           EE+ P+H R   RQ  ++ N+ LA D RVQ+SH +LGDGITICRRI
Sbjct: 183 EEEAPEHLR-FCRQLTIEHNKFLAADSRVQISHASLGDGITICRRI 227

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122628|ref|XP_002330529.1| predicted protein [Populus trichocarpa] gi|222872463|gb|EEF09594.1| predicted protein [Populus trichocarpa]

 Score =  355 bits (912), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 171/236 (72%), Positives = 201/236 (85%), Gaps = 1/236 (0%)

Query: 3   DKAKQAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLM 62
           D  K  + SKGLLQSE+LY+Y+LETSVYPRE EPL+++R +TA HP AMM TAPDAGQLM
Sbjct: 2   DSKKAISFSKGLLQSEELYQYVLETSVYPRELEPLRELRMLTATHPRAMMATAPDAGQLM 61

Query: 63  AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH 122
           AMLL+LVNA+KTIE+GVFTGYSLLLTAL+IP+DG+ITAIDVNRE YEIGLPII+ AGV+H
Sbjct: 62  AMLLKLVNAQKTIEVGVFTGYSLLLTALSIPKDGKITAIDVNREAYEIGLPIIRNAGVEH 121

Query: 123 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 182
           KINFIESEA  +LD+LL+   NEGSFD+AFVDADK NY NYHERLMKLLKVGGI VYDNT
Sbjct: 122 KINFIESEAQPILDKLLEDHGNEGSFDFAFVDADKVNYWNYHERLMKLLKVGGIVVYDNT 181

Query: 183 LWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF 238
           LWGGTVA+ EE  P++ + + RQ  ++ N+ LA D RVQ+SH   GDGITICRRI+
Sbjct: 182 LWGGTVALSEESTPENMK-AGRQLTIEFNKLLAADSRVQISHAPSGDGITICRRIY 236

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738705|emb|CBI27950.3| unnamed protein product [Vitis vinifera]

 Score =  352 bits (904), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 170/235 (72%), Positives = 204/235 (86%), Gaps = 1/235 (0%)

Query: 3   DKAKQAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLM 62
           +++ +   SKGLLQSE+LY+Y+LETSVYPREPEPLK++RD+TA HP A+M TAPDAGQLM
Sbjct: 2   EQSGKKNPSKGLLQSEELYQYLLETSVYPREPEPLKELRDITATHPKAVMATAPDAGQLM 61

Query: 63  AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH 122
            MLLRLVNAKKTIEIGVFTGYSLLLTAL+IP+DG+ITAIDV+R+ YE+GLP+I+KAGV+H
Sbjct: 62  DMLLRLVNAKKTIEIGVFTGYSLLLTALSIPDDGKITAIDVDRQAYEMGLPVIRKAGVEH 121

Query: 123 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 182
           KINFIES+AL VLD+LL+  ENEG FD+AFVDADK NY NYHERLMKLLK+GGI VYDNT
Sbjct: 122 KINFIESQALPVLDKLLEEHENEGIFDFAFVDADKVNYKNYHERLMKLLKMGGIVVYDNT 181

Query: 183 LWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237
           L GGTVA+PEE V ++ R  +R+  ++LN  LA DPRVQ+    LGDGITICRR+
Sbjct: 182 LRGGTVAMPEELVAENLR-ENRRLTIELNNFLAADPRVQICLAPLGDGITICRRV 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444995|ref|XP_002279921.1| PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220-like [Vitis vinifera]

 Score =  351 bits (901), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 170/237 (71%), Positives = 205/237 (86%), Gaps = 1/237 (0%)

Query: 1   MTDKAKQAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQ 60
           + +++ +   SKGLLQSE+LY+Y+LETSVYPREPEPLK++RD+TA HP A+M TAPDAGQ
Sbjct: 46  VMEQSGKKNPSKGLLQSEELYQYLLETSVYPREPEPLKELRDITATHPKAVMATAPDAGQ 105

Query: 61  LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV 120
           LM MLLRLVNAKKTIEIGVFTGYSLLLTAL+IP+DG+ITAIDV+R+ YE+GLP+I+KAGV
Sbjct: 106 LMDMLLRLVNAKKTIEIGVFTGYSLLLTALSIPDDGKITAIDVDRQAYEMGLPVIRKAGV 165

Query: 121 DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180
           +HKINFIES+AL VLD+LL+  ENEG FD+AFVDADK NY NYHERLMKLLK+GGI VYD
Sbjct: 166 EHKINFIESQALPVLDKLLEEHENEGIFDFAFVDADKVNYKNYHERLMKLLKMGGIVVYD 225

Query: 181 NTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237
           NTL GGTVA+PEE V ++ R  +R+  ++LN  LA DPRVQ+    LGDGITICRR+
Sbjct: 226 NTLRGGTVAMPEELVAENLR-ENRRLTIELNNFLAADPRVQICLAPLGDGITICRRV 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147799759|emb|CAN75051.1| hypothetical protein VITISV_020117 [Vitis vinifera]

 Score =  342 bits (878), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 170/235 (72%), Positives = 200/235 (85%), Gaps = 9/235 (3%)

Query: 11   SKGLLQSEDLYR--------YILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLM 62
            SKGLLQSE+LY+        Y+LETSVYPREPEPLK++RD+TA HP A+M TAPDAGQLM
Sbjct: 1391 SKGLLQSEELYQLKALKIWQYLLETSVYPREPEPLKELRDITATHPKAVMATAPDAGQLM 1450

Query: 63   AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH 122
             MLLRLVNAKKTIEIGVFTGYSLLLTAL+IP+DG+ITAIDV+R+ YE+GLP+I+KAGV+H
Sbjct: 1451 DMLLRLVNAKKTIEIGVFTGYSLLLTALSIPDDGKITAIDVDRQAYEMGLPVIRKAGVEH 1510

Query: 123  KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 182
            KINFIES+AL VLD+LL+  ENEG FD+AFVDADK NY NYHERLMKLLK+GGI VYDNT
Sbjct: 1511 KINFIESQALPVLDKLLEEHENEGIFDFAFVDADKXNYKNYHERLMKLLKMGGIVVYDNT 1570

Query: 183  LWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237
            L GGTVA+PEE V ++ R  +R+  ++LN  LA DPRVQ+    LGDGITICRR+
Sbjct: 1571 LRGGTVAMPEELVAENLR-ENRRLTIELNNFLAADPRVQICLAPLGDGITICRRV 1624

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803474|ref|XP_002869621.1| hypothetical protein ARALYDRAFT_913940 [Arabidopsis lyrata subsp. lyrata] gi|297315457|gb|EFH45880.1| hypothetical protein ARALYDRAFT_913940 [Arabidopsis lyrata subsp. lyrata]

 Score =  342 bits (877), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 162/236 (68%), Positives = 200/236 (84%), Gaps = 1/236 (0%)

Query: 3   DKAKQAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLM 62
           D+AK +  SKGLL+SE+LY+YILETSVYPREPE LK++R++T +HP A M TAPDAGQLM
Sbjct: 4   DEAKASDFSKGLLKSEELYKYILETSVYPREPEVLKELRNITHNHPQAGMATAPDAGQLM 63

Query: 63  AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH 122
            MLL+LVNA+KTIE+GVFTGYSLLLTALT+PEDG++ AIDVNR++YEIGLP+IKK GV+H
Sbjct: 64  GMLLKLVNARKTIEVGVFTGYSLLLTALTLPEDGKVIAIDVNRDSYEIGLPVIKKVGVEH 123

Query: 123 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 182
           KI+F ESEAL  LD+LL    NEG FD+AFVDADK NY NYHERL++L+KVGGI VYDNT
Sbjct: 124 KIDFRESEALPALDELLNDKANEGGFDFAFVDADKVNYWNYHERLIRLIKVGGIIVYDNT 183

Query: 183 LWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF 238
           LWGG+VA P+   P+ +R   ++A L+LN+ L+ D RVQ+S  ALGDGITICRR++
Sbjct: 184 LWGGSVAEPDSSTPE-WRIEVKKATLELNKKLSADQRVQISQAALGDGITICRRLY 238

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444997|ref|XP_002279936.1| PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Vitis vinifera]

 Score =  342 bits (876), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 167/242 (69%), Positives = 201/242 (83%), Gaps = 4/242 (1%)

Query: 1   MTDKAKQAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQ 60
           M + AK+    KGLL++E+LY+YILETSVYPREPEPLK++RD TA HP A++ TAPDAGQ
Sbjct: 1   MGESAKKTTVYKGLLKNEELYQYILETSVYPREPEPLKELRDATAAHPRAIIATAPDAGQ 60

Query: 61  LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV 120
            + MLL+LVNAKKTIEIGVFTGYSLLLTAL+IP+DG+I AIDV+R+ YEIGLPII++AGV
Sbjct: 61  SIDMLLKLVNAKKTIEIGVFTGYSLLLTALSIPDDGKIIAIDVDRKNYEIGLPIIRRAGV 120

Query: 121 DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180
           +HKINFIES+AL VLD+LL+  ENEGS D+AFVDADK NY NYHERLMKLLKVGG+ VYD
Sbjct: 121 EHKINFIESQALPVLDKLLEDHENEGSLDFAFVDADKGNYKNYHERLMKLLKVGGVVVYD 180

Query: 181 NTLWGGTVAVP----EEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 236
           NTLW GTVA+P    EE V   ++   R+ I++LN+ LA D RVQ+    LGDGITICRR
Sbjct: 181 NTLWHGTVALPEDLVEELVDGEYKKEMRKHIMELNKYLATDSRVQICVAPLGDGITICRR 240

Query: 237 IF 238
           I+
Sbjct: 241 IY 242

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147840665|emb|CAN62003.1| hypothetical protein VITISV_007881 [Vitis vinifera]

 Score =  341 bits (875), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 167/242 (69%), Positives = 201/242 (83%), Gaps = 4/242 (1%)

Query: 1   MTDKAKQAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQ 60
           M + AK+    KGLL++E+LY+YILETSVYPREPEPLK++RD TA HP A++ TAPDAGQ
Sbjct: 44  MGESAKKTTVYKGLLKNEELYQYILETSVYPREPEPLKELRDATAAHPRAIIATAPDAGQ 103

Query: 61  LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV 120
            + MLL+LVNAKKTIEIGVFTGYSLLLTAL+IP+DG+I AIDV+R+ YEIGLPII++AGV
Sbjct: 104 SIDMLLKLVNAKKTIEIGVFTGYSLLLTALSIPDDGKIIAIDVDRKNYEIGLPIIRRAGV 163

Query: 121 DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180
           +HKINFIES+AL VLD+LL+  ENEGS D+AFVDADK NY NYHERLMKLLKVGG+ VYD
Sbjct: 164 EHKINFIESQALPVLDKLLEDHENEGSLDFAFVDADKGNYKNYHERLMKLLKVGGVVVYD 223

Query: 181 NTLWGGTVAVP----EEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 236
           NTLW GTVA+P    EE V   ++   R+ I++LN+ LA D RVQ+    LGDGITICRR
Sbjct: 224 NTLWHGTVALPEDLVEELVDGEYKKEMRKHIMELNKYLATDSRVQICVAPLGDGITICRR 283

Query: 237 IF 238
           I+
Sbjct: 284 IY 285

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738706|emb|CBI27951.3| unnamed protein product [Vitis vinifera]

 Score =  340 bits (872), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 166/238 (69%), Positives = 200/238 (84%), Gaps = 2/238 (0%)

Query: 1   MTDKAKQAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQ 60
           M + AK+    KGLL++E+LY+YILETSVYPREPEPLK++RD TA HP A++ TAPDAGQ
Sbjct: 60  MGESAKKTTVYKGLLKNEELYQYILETSVYPREPEPLKELRDATAAHPRAIIATAPDAGQ 119

Query: 61  LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV 120
            + MLL+LVNAKKTIEIGVFTGYSLLLTAL+IP+DG+I AIDV+R+ YEIGLPII++AGV
Sbjct: 120 SIDMLLKLVNAKKTIEIGVFTGYSLLLTALSIPDDGKIIAIDVDRKNYEIGLPIIRRAGV 179

Query: 121 DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180
           +HKINFIES+AL VLD+LL+  ENEGS D+AFVDADK NY NYHERLMKLLKVGG+ VYD
Sbjct: 180 EHKINFIESQALPVLDKLLEDHENEGSLDFAFVDADKGNYKNYHERLMKLLKVGGVVVYD 239

Query: 181 NTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF 238
           NTLW GTVA+PE+ V +      R+ I++LN+ LA D RVQ+    LGDGITICRRI+
Sbjct: 240 NTLWHGTVALPEDLVEE--LKEMRKHIMELNKYLATDSRVQICVAPLGDGITICRRIY 295

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
TAIR|locus:2136799	232	CCoAOMT7 "caffeoyl coenzyme A	0.953	0.978	0.688	5e-83
TAIR|locus:2124286	259	CCoAOMT1 "caffeoyl coenzyme A	0.970	0.891	0.593	1.4e-73
TAIR|locus:2200271	232	CCOAMT "caffeoyl-CoA 3-O-methy	0.936	0.961	0.563	3.2e-65
UNIPROTKB|Q7F8T6	292	ROMT-17 "Tricin synthase 2" [O	0.957	0.780	0.526	5.2e-65
UNIPROTKB|Q9XGP7	252	ROMT-15 "Tricin synthase 1" [O	0.957	0.904	0.532	3e-62
TAIR|locus:2200256	233	TSM1 [Arabidopsis thaliana (ta	0.936	0.957	0.530	1.6e-61
UNIPROTKB|F1NI85	267	COMTD1 "Uncharacterized protei	0.878	0.782	0.440	2.5e-42
ZFIN|ZDB-GENE-030131-1072	286	comtd1 "catechol-O-methyltrans	0.941	0.783	0.399	9.9e-39
TAIR|locus:2079557	290	OMTF3 "O-MTase family 3 protei	0.857	0.703	0.414	1.3e-36
UNIPROTKB|E2RDX6	262	COMTD1 "Uncharacterized protei	0.899	0.816	0.396	2e-33

TAIR|locus:2136799 CCoAOMT7 "caffeoyl coenzyme A ester O-methyltransferase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
 Identities = 157/228 (68%), Positives = 195/228 (85%)

Query:    11 SKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVN 70
             +KGLL+SE+LY+YILETSVYPREPE L+++R++T +HP A M TAPDAGQLM MLL LVN
Sbjct:     6 AKGLLKSEELYKYILETSVYPREPEVLRELRNITHNHPQAGMATAPDAGQLMGMLLNLVN 65

Query:    71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 130
             A+KTIE+GVFTGYSLLLTALT+PEDG++ AID+NR++YEIGLP+IKKAGV+HKI+F ESE
Sbjct:    66 ARKTIEVGVFTGYSLLLTALTLPEDGKVIAIDMNRDSYEIGLPVIKKAGVEHKIDFKESE 125

Query:   131 ALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAV 190
             AL  LD+LL    NEG FD+AFVDADK NY NYHERL++L+KVGGI VYDNTLWGG+VA 
Sbjct:   126 ALPALDELLNNKVNEGGFDFAFVDADKLNYWNYHERLIRLIKVGGIIVYDNTLWGGSVAE 185

Query:   191 PEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF 238
             P+   P+ +R   ++A L+LN+ L+ D RVQ+S  ALGDGITICRR++
Sbjct:   186 PDSSTPE-WRIEVKKATLELNKKLSADQRVQISQAALGDGITICRRLY 232

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

TAIR|locus:2124286 CCoAOMT1 "caffeoyl coenzyme A O-methyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
 Identities = 137/231 (59%), Positives = 180/231 (77%)

Query:     7 QAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLL 66
             Q    K LLQS+DLY+YILETSVYPREPE +K++R+VTA HPW +M T+ D GQ + ML+
Sbjct:    28 QEVGHKSLLQSDDLYQYILETSVYPREPESMKELREVTAKHPWNIMTTSADEGQFLNMLI 87

Query:    67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF 126
             +LVNAK T+EIGV+TGYSLL TAL +PEDG+I A+DVNRE YE+GLPII+KAGV HKI+F
Sbjct:    88 KLVNAKNTMEIGVYTGYSLLATALALPEDGKILAMDVNRENYELGLPIIEKAGVAHKIDF 147

Query:   127 IESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGG 186
              E  AL VLD+++   +N G++D+ FVDADKDNY NYH+RL+ L+K+GG+  YDNTLW G
Sbjct:   148 REGPALPVLDEIVADEKNHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNG 207

Query:   187 TVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237
             +V  P +     +    R  +L+LN++LA DPR+++  + +GDGITICRRI
Sbjct:   208 SVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRI 258

GO:0005634 "nucleus" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009805 "coumarin biosynthetic process" evidence=RCA;IMP

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2200271 CCOAMT "caffeoyl-CoA 3-O-methyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 129/229 (56%), Positives = 172/229 (75%)

Query:    11 SKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAM--MGTAPDAGQLMAMLLRL 68
             +KG+L+SE L +YI+ETS YPRE E LK++R  T      +  M    D G  ++ML+++
Sbjct:     7 TKGILKSEALKQYIMETSAYPREHELLKELRKATVQKYGNLSEMEVPVDEGHFLSMLVKI 66

Query:    69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE 128
             +NAK TIEIGVFTGYSLL TAL +PEDG+ITAID+++E YE+GL  IKKAGVDHKINFI 
Sbjct:    67 MNAKNTIEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIH 126

Query:   129 SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTV 188
             S+ L  LDQL+    ++  FD+AF DADK +Y N+HERL+KL+KVGGI  +DNTLW G V
Sbjct:   127 SDGLKALDQLVN---DKCEFDFAFADADKSSYVNFHERLLKLVKVGGIIAFDNTLWFGFV 183

Query:   189 AVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237
             A  E+ VP+H R   R A+++ N+ LA DPRV++S +++GDGIT+CRR+
Sbjct:   184 AEDEDGVPEHMR-EYRAALIEFNKKLALDPRVEVSQISIGDGITLCRRL 231

GO:0005737 "cytoplasm" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

GO:0009809 "lignin biosynthetic process" evidence=ISS

UNIPROTKB|Q7F8T6 ROMT-17 "Tricin synthase 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 120/228 (52%), Positives = 170/228 (74%)

Query:    10 SSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLV 69
             S K LL+SE L+ Y+L T VYPRE E ++++R +T++H +  M + P+ GQL+++LL L 
Sbjct:    64 SPKTLLKSESLHEYMLNTMVYPRENEFMRELRLITSEHTYGFMSSPPEEGQLLSLLLNLT 123

Query:    70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 129
              AK TIE+GVFTG S+L TAL IP+DG++ AIDV+RE +++GLP+IKKAGV HK++F E 
Sbjct:   124 GAKNTIEVGVFTGCSVLATALAIPDDGKVVAIDVSREYFDLGLPVIKKAGVAHKVDFREG 183

Query:   130 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVA 189
              A+ +LD LL   ENEG FD+AFVDADK NY  YHERL++L++ GG+  YDNTLWGG+VA
Sbjct:   184 AAMPILDNLLANEENEGKFDFAFVDADKGNYGEYHERLLRLVRAGGVLAYDNTLWGGSVA 243

Query:   190 VPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237
             + ++ V + F    R++I+  N  +A DPRV+   + + DGIT+CRR+
Sbjct:   244 LEDDSVLEEFDQDIRRSIVAFNAKIAGDPRVEAVQLPVSDGITLCRRL 291

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

UNIPROTKB|Q9XGP7 ROMT-15 "Tricin synthase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 124/233 (53%), Positives = 170/233 (72%)

Query:     9 ASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRL 68
             +++K LL+S+ LY+Y+L+T+V PREPE ++ +R +T  H W  M ++ D  QL+ MLL++
Sbjct:    20 STNKTLLKSDALYKYVLDTTVLPREPECMRDLRLITDKHQWGFMQSSADEAQLLGMLLKM 79

Query:    69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE 128
               AK+TIE+GVFTGYSLL TAL +PEDG++ AID +RE+YEIG P ++KAGV HK++F E
Sbjct:    80 AGAKRTIEVGVFTGYSLLATALALPEDGKVVAIDPDRESYEIGRPFLEKAGVAHKVDFRE 139

Query:   129 SEALSVLDQLLKYSE---NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWG 185
              + L  LD+LL        E +FD+AFVDADK NY  YHE+L++L++VGG  VYDNTLW 
Sbjct:   140 GKGLEKLDELLAEEAAAGREAAFDFAFVDADKPNYVKYHEQLLQLVRVGGHIVYDNTLWA 199

Query:   186 GTVAVPEEQ-VPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237
             GTVA+P +  + D  R  S  AI DLN  LA DPR+ +  +A+ DGITICRR+
Sbjct:   200 GTVALPPDTPLSDLDRRFS-VAIRDLNSRLAADPRIDVCQLAIADGITICRRL 251

GO:0005634 "nucleus" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2200256 TSM1 [Arabidopsis thaliana (taxid:3702)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 121/228 (53%), Positives = 170/228 (74%)

Query:    12 KGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAM--MGTAPDAGQLMAMLLRLV 69
             KG+L+SE L +YI+ET+ YPRE E LK++R+ T      +  MG   D    ++ML++++
Sbjct:     8 KGILKSEALKQYIMETTAYPREHELLKELREATIQRYGNLSEMGVPVDESLFLSMLVKII 67

Query:    70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 129
             NAK TIEIGVFTGYSL   AL +PEDG+ITAID+++  Y +GL  +KKAGVDHKINFI+S
Sbjct:    68 NAKNTIEIGVFTGYSLFTVALALPEDGRITAIDIDQAGYNLGLEFMKKAGVDHKINFIQS 127

Query:   130 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVA 189
             +A+  LDQLL   + E  +D+AFVDADK NY  + E+L+KL+KVGGI  +DNTLW GT+ 
Sbjct:   128 DAVRGLDQLLNGEKQE--YDFAFVDADKTNYVYFLEKLLKLVKVGGIIAFDNTLWFGTLI 185

Query:   190 VPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237
               E +VP H R + R+A+L+ N+ LA DPRV+++ +++GDG+T+CRR+
Sbjct:   186 QKENEVPGHMR-AYREALLEFNKILARDPRVEIAQISIGDGLTLCRRL 232

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

GO:0048316 "seed development" evidence=IMP

GO:0080012 "trihydroxyferuloyl spermidine O-methyltransferase activity" evidence=IMP;IDA

GO:0080076 "caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080077 "trihydroxyferuloyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080078 "tricaffeoyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080088 "spermidine hydroxycinnamate conjugate biosynthetic process" evidence=IDA

GO:0010584 "pollen exine formation" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|F1NI85 COMTD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 96/218 (44%), Positives = 141/218 (64%)

Query:    16 QSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTI 75
             +S  L++YIL+ S+  RE   LKK+R +TA++PW  M  + D  QLMA L++L+ AKK I
Sbjct:    55 KSSPLWQYILDHSL--REHPILKKLRLLTAEYPWGKMMVSCDQAQLMANLIKLIKAKKVI 112

Query:    76 EIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 135
             E+GV TGY+ L  AL +P++G++ A D+N +  +IG P+ K+AGVDHKI+     A   L
Sbjct:   113 EVGVLTGYNALSMALALPDNGRVIACDINEDYAKIGKPLWKEAGVDHKIDLRIKPATQTL 172

Query:   136 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQV 195
             D+LL   E E +FD+AF+DADK++Y  Y+E+ ++L+K GGI   DN L  G V  P +  
Sbjct:   173 DELLAGGEAE-TFDFAFIDADKESYNEYYEKCLRLIKKGGIIAIDNVLRCGMVLKPRK-- 229

Query:   196 PDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITI 233
              D     + Q+I  LN  L  D RV +S + +GDG+T+
Sbjct:   230 -DDL---ATQSIHHLNEKLVRDARVNISMIPMGDGVTL 263

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

ZFIN|ZDB-GENE-030131-1072 comtd1 "catechol-O-methyltransferase domain containing 1" [Danio rerio (taxid:7955)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 93/233 (39%), Positives = 138/233 (59%)

Query:     1 MTDKAKQAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQ 60
             +T   + A  SK     + L +Y++  S+  RE   L K+R  T +    +M  A +  Q
Sbjct:    59 LTGLCRSALISKSHEGDDPLLQYVVNNSL--REHPVLTKLRLRTMEDARNVMMVASEQAQ 116

Query:    61 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV 120
             LMA L +L+ A KTIEIG++TGY+ L  AL +PE+G++ A ++N +  +IG P   +AGV
Sbjct:   117 LMANLAKLIEANKTIEIGLYTGYNALSLALVVPENGRVVACEINEDYVKIGKPFFAEAGV 176

Query:   121 DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180
             ++KI+     A+  LD+LL   E  G +D+ F+DADK NY  Y+E+ ++L++ GGI   D
Sbjct:   177 ENKIDIRLKPAVETLDELLSAGE-AGMYDFVFIDADKKNYETYYEKSLQLVRKGGIVAID 235

Query:   181 NTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITI 233
             N LWGG V  P E   D     S QAI  LN+ L  D R+ LS + +GDG+T+
Sbjct:   236 NVLWGGRVINPAE---DDL---SSQAIDKLNKKLHKDERIDLSMLTVGDGLTL 282

GO:0008171 "O-methyltransferase activity" evidence=IEA

TAIR|locus:2079557 OMTF3 "O-MTase family 3 protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 90/217 (41%), Positives = 130/217 (59%)

Query:    20 LYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGV 79
             LY Y+L      RE E LK++R+ TA    + +  +PD  QL+AML+ ++ AK+ IE+GV
Sbjct:    86 LYDYVLNNV---REHEILKQLREETAI---SQIQVSPDQAQLLAMLVEILGAKRCIEVGV 139

Query:    80 FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL 139
             +TGYS L  AL +PE G++ A D +    E+     + AGV HK+      A   L  ++
Sbjct:   140 YTGYSSLAVALVLPESGRLVACDKDANALEVAKRYYELAGVSHKVTVKHGLAAESLMSMI 199

Query:   140 KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHF 199
             +  E E S+D+AF+DADK  Y  Y E L++L++VGG+ V DN LW G VA  +  V D  
Sbjct:   200 QNGE-ESSYDFAFLDADKAMYQEYFESLLRLVRVGGVIVIDNVLWHGWVA--DSTVNDER 256

Query:   200 RGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 236
               S R    + N+ L DD RV +S V++GDG+TICR+
Sbjct:   257 TISLR----NFNKKLMDDQRVSISMVSIGDGMTICRK 289

GO:0005576 "extracellular region" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0008276 "protein methyltransferase activity" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|E2RDX6 COMTD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 90/227 (39%), Positives = 130/227 (57%)

Query:    14 LLQSED--LYRYILETSVYPREPEPLKKIRDVTADHPWA-MMGTAPDAGQLMAMLLRLVN 70
             LL  ED  L+RY+L  S+  RE   L+ +R +T + P    M T   A QL+A L RL+ 
Sbjct:    46 LLPPEDSPLWRYLLSRSM--REHPALRSLRLLTLEQPQGDSMMTCEQA-QLLANLARLIK 102

Query:    71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 130
             AKK +++G FTGYS L  AL +P  G++   +VN    E+G P+ ++A  +HKI      
Sbjct:   103 AKKALDLGTFTGYSALALALALPPAGRVVTCEVNPGPPELGRPLWRQAEEEHKIELRLKP 162

Query:   131 ALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAV 190
             AL  LD+LL   E  G+FD A VDADK+N   Y+ER ++LL+ GG+    + LW G V  
Sbjct:   163 ALETLDELLAAGE-AGTFDVAVVDADKENCAAYYERCLQLLRSGGVLAVLSVLWRGEVLQ 221

Query:   191 PEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237
             P+   P   R    + + +LN  +  D RV +S + LGDG+T+  +I
Sbjct:   222 PQ---P---RDVQARCVQNLNERILRDARVHISLLPLGDGLTLAFKI 262

GO:0008171 "O-methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XGD6	CAMT1_MAIZE	2, ., 1, ., 1, ., 1, 0, 4	0.5884	0.9495	0.8759	N/A	no
Q9SWB8	CAMT2_EUCGL	2, ., 1, ., 1, ., 1, 0, 4	0.5654	0.9915	0.9554	N/A	no
Q43161	CAMT_STELP	2, ., 1, ., 1, ., 1, 0, 4	0.5929	0.9453	0.9336	N/A	no
Q9SLP8	CAMT_CITNA	2, ., 1, ., 1, ., 1, 0, 4	0.5608	0.9663	0.9913	N/A	no
Q9C5D7	CAMT3_ARATH	2, ., 1, ., 1, ., 1, 0, 4	0.6885	0.9537	0.9784	yes	no
Q40313	CAMT_MEDSA	2, ., 1, ., 1, ., 1, 0, 4	0.5930	0.9705	0.9352	N/A	no
Q41720	CAMT_ZINEL	2, ., 1, ., 1, ., 1, 0, 4	0.5822	0.9915	0.9632	N/A	no
P28034	CAMT_PETCR	2, ., 1, ., 1, ., 1, 0, 4	0.5884	0.9495	0.9377	N/A	no
Q86VU5	CMTD1_HUMAN	2, ., 1, ., 1, ., -	0.3728	0.9117	0.8282	yes	no
O24149	CAMT2_TOBAC	2, ., 1, ., 1, ., 1, 0, 4	0.5800	0.9705	0.9545	N/A	no
Q9XGD5	CAMT2_MAIZE	2, ., 1, ., 1, ., 1, 0, 4	0.5840	0.9495	0.8560	N/A	no
Q42945	CAMT6_TOBAC	2, ., 1, ., 1, ., 1, 0, 4	0.5627	0.9705	0.9352	N/A	no
Q8BIG7	CMTD1_MOUSE	2, ., 1, ., 1, ., -	0.3716	0.9033	0.8206	yes	no
O81185	CAMT1_EUCGL	2, ., 1, ., 1, ., 1, 0, 4	0.5800	0.9663	0.9349	N/A	no
O24144	CAMT1_TOBAC	2, ., 1, ., 1, ., 1, 0, 4	0.5593	0.9915	0.9874	N/A	no
Q43095	CAMT_POPTM	2, ., 1, ., 1, ., 1, 0, 4	0.5974	0.9705	0.9352	N/A	no
O65162	CAMT_MESCR	2, ., 1, ., 1, ., 1, 0, 4	0.5844	0.9705	0.9094	N/A	no
O04854	CAMT_EUCGU	2, ., 1, ., 1, ., 1, 0, 4	0.5844	0.9663	0.9236	N/A	no
O04899	CAMT5_TOBAC	2, ., 1, ., 1, ., 1, 0, 4	0.5930	0.9705	0.9625	N/A	no
P93711	CAMT_POPKI	2, ., 1, ., 1, ., 1, 0, 4	0.5347	0.9453	0.9574	N/A	no
Q9ZTT5	CAMT_PINTA	2, ., 1, ., 1, ., 1, 0, 4	0.5732	0.9747	0.8957	N/A	no
O65862	CAMT1_POPTR	2, ., 1, ., 1, ., 1, 0, 4	0.5974	0.9705	0.9352	yes	no
O24151	CAMT4_TOBAC	2, ., 1, ., 1, ., 1, 0, 4	0.5670	0.9705	0.9545	N/A	no
O24150	CAMT3_TOBAC	2, ., 1, ., 1, ., 1, 0, 4	0.5714	0.9705	0.9545	N/A	no
Q8H9B6	CAMT_SOLTU	2, ., 1, ., 1, ., 1, 0, 4	0.5757	0.9705	0.9545	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.1.1.104	0.946
3rd Layer	2.1.1	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_1450034 hypothetical protein (236 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	238
PLN02781	234	PLN02781, PLN02781, Probable caffeoyl-CoA O-methyl	1e-108
PLN02589	247	PLN02589, PLN02589, caffeoyl-CoA O-methyltransfera	1e-106
pfam01596	204	pfam01596, Methyltransf_3, O-methyltransferase	1e-104
PLN02476	278	PLN02476, PLN02476, O-methyltransferase	3e-53
COG4122	219	COG4122, COG4122, Predicted O-methyltransferase [G	3e-48
pfam13578	105	pfam13578, Methyltransf_24, Methyltransferase doma	7e-10
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	5e-05
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	7e-04
COG2519	256	COG2519, GCD14, tRNA(1-methyladenosine) methyltran	0.002
PRK00377	198	PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltr	0.002

>gnl|CDD|215417 PLN02781, PLN02781, Probable caffeoyl-CoA O-methyltransferase

 Score =  310 bits (795), Expect = e-108
 Identities = 131/230 (56%), Positives = 180/230 (78%), Gaps = 4/230 (1%)

Query: 11  SKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADH--PWAMMGTAPDAGQLMAMLLRL 68
            KG+L+SE L +YI+ETS YPRE E LK++R+ T       + M    D G  ++ML+++
Sbjct: 7   PKGILKSEALKQYIMETSAYPREHELLKELREATVQKYGNLSEMEVPVDEGLFLSMLVKI 66

Query: 69  VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE 128
           +NAK T+EIGVFTGYSLL TAL +PEDG+ITAID+++E YE+GL  IKKAGVDHKINFI+
Sbjct: 67  MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQ 126

Query: 129 SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTV 188
           S+ALS LDQLL  ++ +  FD+AFVDADK NY ++HE+L+KL+KVGGI  +DNTLW G V
Sbjct: 127 SDALSALDQLLN-NDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFV 185

Query: 189 AVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF 238
           A  E++VP+H R + R+A+L+ N+ LA DPRV++S +++GDG+T+CRR+ 
Sbjct: 186 AQEEDEVPEHMR-AYRKALLEFNKLLASDPRVEISQISIGDGVTLCRRLV 234

Length = 234

>gnl|CDD|166230 PLN02589, PLN02589, caffeoyl-CoA O-methyltransferase

 Score =  306 bits (784), Expect = e-106
 Identities = 134/231 (58%), Positives = 179/231 (77%)

Query: 7   QAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLL 66
           Q    K LLQS+ LY+YILETSVYPREPE +K++R++TA HPW +M T+ D GQ + MLL
Sbjct: 16  QEVGHKSLLQSDALYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLL 75

Query: 67  RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF 126
           +L+NAK T+EIGV+TGYSLL TAL +PEDG+I A+D+NRE YE+GLP+I+KAGV HKI+F
Sbjct: 76  KLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDF 135

Query: 127 IESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGG 186
            E  AL VLDQ+++  +  G+FD+ FVDADKDNY NYH+RL+ L+KVGG+  YDNTLW G
Sbjct: 136 REGPALPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNG 195

Query: 187 TVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237
           +V  P +     +    R  +L+LN++LA DPR+++  + +GDGIT+CRRI
Sbjct: 196 SVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 246

Length = 247

>gnl|CDD|201880 pfam01596, Methyltransf_3, O-methyltransferase

 Score =  299 bits (768), Expect = e-104
 Identities = 115/213 (53%), Positives = 155/213 (72%), Gaps = 9/213 (4%)

Query: 25  LETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYS 84
           LETSV   E E LK++R+ TA  P + M  +P+ GQ ++MLL+L+ AK+T+EIGVFTGYS
Sbjct: 1   LETSVR--EHEILKELREATAKLPLSPMQISPEEGQFLSMLLKLIGAKRTLEIGVFTGYS 58

Query: 85  LLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 144
           LL TAL +PEDG+ITA D++ E YEIGLP I+KAGV  KI+F   +AL  L++L+K  + 
Sbjct: 59  LLATALALPEDGKITACDIDPEAYEIGLPFIQKAGVADKISFRLGDALPTLEELVK-DKP 117

Query: 145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSR 204
            G FD+ FVDADK NY NY+ERL++L+KVGG+   DNTLW G VA P+++VP        
Sbjct: 118 LGEFDFIFVDADKSNYPNYYERLLELVKVGGLIAIDNTLWFGKVAEPDDEVPKT------ 171

Query: 205 QAILDLNRSLADDPRVQLSHVALGDGITICRRI 237
             + +LN+ LA D RV++S + +GDGIT+CRRI
Sbjct: 172 VRVRELNKLLASDERVEISMLPVGDGITLCRRI 204

Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase and a family of bacterial O-methyltransferases that may be involved in antibiotic production. Length = 204

>gnl|CDD|178094 PLN02476, PLN02476, O-methyltransferase

 Score =  172 bits (437), Expect = 3e-53
 Identities = 88/217 (40%), Positives = 133/217 (61%), Gaps = 10/217 (4%)

Query: 20  LYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGV 79
           LY Y+L      REP+ L+++R+ T+    + M  +PD  QL+AML++++ A++ IE+GV
Sbjct: 71  LYDYVLSNV---REPKILRQLREETSKMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGV 127

Query: 80  FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL 139
           +TGYS L  AL +PE G + A + +  + E+     + AGV HK+N     A   L  ++
Sbjct: 128 YTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMI 187

Query: 140 KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHF 199
           +  E   S+D+AFVDADK  Y +Y E L++L++VGG+ V DN LW G VA P   V D  
Sbjct: 188 QNGE-GSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADP--LVND-- 242

Query: 200 RGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 236
             +   +I + N+ L DD RV +S V +GDG+TICR+
Sbjct: 243 --AKTISIRNFNKKLMDDKRVSISMVPIGDGMTICRK 277

Length = 278

>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]

 Score =  157 bits (400), Expect = 3e-48
 Identities = 81/221 (36%), Positives = 116/221 (52%), Gaps = 15/221 (6%)

Query: 18  EDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDA-GQLMAMLLRLVNAKKTIE 76
           EDLY Y+      P EP  L    +  A      +       G L+ +L RL   K+ +E
Sbjct: 10  EDLYDYLEALI--PGEPPALLAELEEFAREN--GVPIIDPETGALLRLLARLSGPKRILE 65

Query: 77  IGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVL 135
           IG   GYS L  AL +P+DG++T I+ + E  EI    + +AGVD +I  +   +AL VL
Sbjct: 66  IGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVL 125

Query: 136 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQV 195
            +LL     +GSFD  F+DADK +Y  Y ER + LL+ GG+ V DN L+GG VA P  + 
Sbjct: 126 SRLL-----DGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRD 180

Query: 196 PDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 236
                 +  + + D N  L +DPR     + LGDG+ + R+
Sbjct: 181 AR----TQVRGVRDFNDYLLEDPRYDTVLLPLGDGLLLSRK 217

Length = 219

>gnl|CDD|222236 pfam13578, Methyltransf_24, Methyltransferase domain

 Score = 54.6 bits (132), Expect = 7e-10
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 11/112 (9%)

Query: 75  IEIGVFTGYSLLLTALTIPE--DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 132
           +EIGV++G S L  A  + +   G++ +ID            ++KAG+  ++  +  ++L
Sbjct: 1   VEIGVYSGVSTLWLAQALKDNGLGRLYSIDPWPGAEAG--ANLRKAGLADRVRLLRGDSL 58

Query: 133 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYH--ERLMKLLKVGGIAVYDNT 182
             L +L      +GS D  F+D D          E  + LL  GGI V+ + 
Sbjct: 59  EALARL-----PDGSIDLLFIDGDHTYEAVLADLELWLPLLAPGGIIVFHDI 105

This family appears to be a methyltransferase domain. Length = 105

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 13/104 (12%)

Query: 75  IEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GVDHKINFIESEAL 132
           ++IG  TG   +  A   P   ++T +D++ E  E+     + A   +  +I F++ +A 
Sbjct: 6   LDIGCGTGSLAIELARLFP-GARVTGVDLSPEMLEL---ARENAKLALGPRITFVQGDAP 61

Query: 133 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 176
             LD L         FD  F+     +     + L  LLK GG 
Sbjct: 62  DALDLL-------EGFDAVFIGGGGGDLLELLDALASLLKPGGR 98

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 8/111 (7%)

Query: 71  AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 130
             K +++G  TGY   + A  +    ++  ID++ E  E      KK G +  + FI+ +
Sbjct: 4   GIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYE-NVEFIQGD 62

Query: 131 ALSVLDQLLKYSENEGSFDYAFVDADKDNYCN---YHERLMKLLKVGGIAV 178
              +    L     + SFD    +   ++  +     E ++++LK GG+ +
Sbjct: 63  IEELPQLQL----EDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLI 109

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 13/124 (10%)

Query: 56  PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII 115
            DAG ++A L  +    + +E G  +G      A  +  +G +T  ++  +  +     +
Sbjct: 81  KDAGYIVARL-GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENL 139

Query: 116 KKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD-ADKDNYCNYHERLMKLLKVG 174
            + G+  ++     +    +D        E   D  F+D  D  N     E +   LK G
Sbjct: 140 SEFGLGDRVTLKLGDVREGID--------EEDVDAVFLDLPDPWNVL---EHVSDALKPG 188

Query: 175 GIAV 178
           G+ V
Sbjct: 189 GVVV 192

Length = 256

>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 6/115 (5%)

Query: 66  LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKIN 125
           LRL      ++IG  TG   +  +L + E G++ A+D + +   +     +K GV + I 
Sbjct: 36  LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIV 95

Query: 126 FIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180
            I+ EA  +L  +         FD  F+    +          +++K GG  V D
Sbjct: 96  LIKGEAPEILFTI------NEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVID 144

Length = 198

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	238
PLN02589	247	caffeoyl-CoA O-methyltransferase	100.0
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	100.0
PLN02476	278	O-methyltransferase	100.0
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	100.0
COG4122	219	Predicted O-methyltransferase [General function pr	100.0
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	100.0
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.77
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.74
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.73
PRK04457	262	spermidine synthase; Provisional	99.73
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.72
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.71
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.71
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.7
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.7
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.7
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.7
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.68
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.68
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.68
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.68
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.68
PLN03075	296	nicotianamine synthase; Provisional	99.67
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.67
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.67
PRK07402	196	precorrin-6B methylase; Provisional	99.67
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.66
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.66
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.66
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.65
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.64
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.64
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.64
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.63
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.62
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.62
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.6
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.6
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.6
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.6
PRK00811	283	spermidine synthase; Provisional	99.59
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.59
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.58
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	99.58
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.58
COG4123	248	Predicted O-methyltransferase [General function pr	99.58
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.57
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.57
PLN02244	340	tocopherol O-methyltransferase	99.57
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.56
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	99.56
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.55
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.55
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.54
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.54
PLN02366	308	spermidine synthase	99.54
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.54
PRK01581	374	speE spermidine synthase; Validated	99.53
PRK11207	197	tellurite resistance protein TehB; Provisional	99.53
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.53
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.53
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.52
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.52
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.52
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.52
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.51
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.51
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.51
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.51
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.51
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.51
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.51
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.51
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.5
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	99.5
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.5
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.49
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.49
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.48
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.48
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.47
PRK04266	226	fibrillarin; Provisional	99.47
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.47
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.46
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.45
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.45
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.45
PRK14968	188	putative methyltransferase; Provisional	99.45
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.45
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.44
PLN02823	336	spermine synthase	99.44
PRK12335	287	tellurite resistance protein TehB; Provisional	99.44
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.44
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.43
PRK08317	241	hypothetical protein; Provisional	99.43
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.43
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.42
PRK06922	677	hypothetical protein; Provisional	99.42
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.42
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.42
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.42
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.41
PRK14967	223	putative methyltransferase; Provisional	99.4
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.4
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.4
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.4
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	99.39
PLN02336	475	phosphoethanolamine N-methyltransferase	99.39
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	99.39
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.39
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.38
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.38
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.37
PRK03612	521	spermidine synthase; Provisional	99.37
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.36
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.36
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.35
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.35
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.35
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.34
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	99.34
COG2890	280	HemK Methylase of polypeptide chain release factor	99.34
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.33
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.32
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.32
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.31
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.31
PTZ00146	293	fibrillarin; Provisional	99.31
PLN02336	475	phosphoethanolamine N-methyltransferase	99.31
PLN02490	340	MPBQ/MSBQ methyltransferase	99.31
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.31
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.3
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.29
TIGR03438	301	probable methyltransferase. This model represents	99.29
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.29
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.28
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.27
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.27
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.27
KOG4300	252	consensus Predicted methyltransferase [General fun	99.27
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.27
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	99.26
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.25
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.25
KOG1271	227	consensus Methyltransferases [General function pre	99.24
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.23
PRK06202	232	hypothetical protein; Provisional	99.23
TIGR00438	188	rrmJ cell division protein FtsJ.	99.23
KOG2904	328	consensus Predicted methyltransferase [General fun	99.21
PHA03411	279	putative methyltransferase; Provisional	99.2
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.2
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	99.19
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.17
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.17
PRK05785	226	hypothetical protein; Provisional	99.16
PLN02672	1082	methionine S-methyltransferase	99.16
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	99.15
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.15
PRK00536	262	speE spermidine synthase; Provisional	99.14
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.14
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.13
KOG2899	288	consensus Predicted methyltransferase [General fun	99.12
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.12
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	99.11
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.09
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	99.09
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.09
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.06
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.05
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.05
PHA03412	241	putative methyltransferase; Provisional	99.05
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.03
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	99.03
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.01
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.01
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	99.0
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.98
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.96
KOG2730	263	consensus Methylase [General function prediction o	98.96
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.95
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.94
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.94
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.94
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.93
KOG2361	264	consensus Predicted methyltransferase [General fun	98.92
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.92
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.92
COG2520	341	Predicted methyltransferase [General function pred	98.9
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.9
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.9
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.88
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.87
COG2521	287	Predicted archaeal methyltransferase [General func	98.86
KOG3010	261	consensus Methyltransferase [General function pred	98.84
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.84
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.83
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.79
PRK04148	134	hypothetical protein; Provisional	98.75
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.71
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.68
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.68
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	98.65
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.64
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.64
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.61
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.6
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.6
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.59
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.58
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	98.56
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.53
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.51
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.51
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.5
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.49
PRK10742	250	putative methyltransferase; Provisional	98.42
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.4
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.4
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.39
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	98.39
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.39
PF13679	141	Methyltransf_32: Methyltransferase domain	98.35
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.31
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.3
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.28
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.27
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.26
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	98.25
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	98.25
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.22
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.21
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.2
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	98.19
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.19
COG4076	252	Predicted RNA methylase [General function predicti	98.17
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.14
COG2384	226	Predicted SAM-dependent methyltransferase [General	98.13
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.12
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	98.1
KOG3115	249	consensus Methyltransferase-like protein [General	98.05
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.05
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	98.02
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	98.01
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.98
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.97
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.88
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.86
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.82
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.79
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.76
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.75
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.73
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	97.71
KOG2940	325	consensus Predicted methyltransferase [General fun	97.68
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	97.68
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.67
COG3897	218	Predicted methyltransferase [General function pred	97.67
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.63
PHA01634	156	hypothetical protein	97.6
KOG2352	482	consensus Predicted spermine/spermidine synthase [	97.59
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.57
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.52
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	97.44
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	97.43
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	97.39
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.3
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	97.26
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	97.25
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.25
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	97.24
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	97.19
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.1
KOG4058	199	consensus Uncharacterized conserved protein [Funct	97.03
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	97.01
KOG1501	636	consensus Arginine N-methyltransferase [General fu	96.99
COG4798	238	Predicted methyltransferase [General function pred	96.99
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	96.92
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	96.83
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.8
COG0286	489	HsdM Type I restriction-modification system methyl	96.79
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	96.65
COG4301	321	Uncharacterized conserved protein [Function unknow	96.53
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.32
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.26
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	96.21
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	96.2
KOG1331	293	consensus Predicted methyltransferase [General fun	96.12
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.1
KOG1227	351	consensus Putative methyltransferase [General func	96.05
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	96.03
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	96.03
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	95.83
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	95.81
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	95.79
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	95.68
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.62
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	95.51
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	95.47
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	95.47
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	95.45
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	95.45
KOG2360	413	consensus Proliferation-associated nucleolar prote	95.29
KOG2671	421	consensus Putative RNA methylase [Replication, rec	95.28
PRK13699	227	putative methylase; Provisional	95.26
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	95.25
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	95.1
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	95.1
COG3129	292	Predicted SAM-dependent methyltransferase [General	95.09
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	95.06
PRK11524	284	putative methyltransferase; Provisional	95.01
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	94.95
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	94.92
PRK11524	284	putative methyltransferase; Provisional	94.92
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	94.85
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	94.83
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	94.78
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	94.73
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	94.71
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	94.62
PLN02740	381	Alcohol dehydrogenase-like	94.47
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	94.23
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	94.21
PLN02827	378	Alcohol dehydrogenase-like	94.19
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	94.17
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	93.98
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	93.93
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	93.9
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	93.88
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	93.85
PRK13699	227	putative methylase; Provisional	93.85
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	93.83
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	93.79
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	93.74
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	93.66
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	93.61
KOG2352	482	consensus Predicted spermine/spermidine synthase [	93.6
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	93.59
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	93.54
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	93.52
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	93.52
COG1565	370	Uncharacterized conserved protein [Function unknow	93.47
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	93.46
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	93.43
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	93.39
COG1568	354	Predicted methyltransferases [General function pre	93.33
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	93.28
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	93.25
PLN02353	473	probable UDP-glucose 6-dehydrogenase	93.04
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	92.98
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	92.93
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	92.88
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	92.87
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	92.85
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	92.8
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	92.76
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	92.72
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	92.69
PTZ00357	1072	methyltransferase; Provisional	92.67
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	92.6
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	92.56
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	92.49
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	92.41
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	92.13
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	92.1
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	92.09
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	92.09
COG3315	297	O-Methyltransferase involved in polyketide biosynt	92.07
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	91.99
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	91.83
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	91.82
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	91.67
COG1255	129	Uncharacterized protein conserved in archaea [Func	91.41
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	91.29
KOG0780	483	consensus Signal recognition particle, subunit Srp	91.21
PRK07417	279	arogenate dehydrogenase; Reviewed	91.04
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	90.99
KOG2912	419	consensus Predicted DNA methylase [Function unknow	90.98
PLN02586	360	probable cinnamyl alcohol dehydrogenase	90.94
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	90.83
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	90.75
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	90.7
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	90.65
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	90.64
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	90.57
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	90.52
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	90.38
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	90.29
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	90.23
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	90.12
COG2961	279	ComJ Protein involved in catabolism of external DN	90.07
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	90.07
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	89.99
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	89.94
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	89.94
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	89.83
KOG0781	587	consensus Signal recognition particle receptor, al	89.8
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	89.76
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	89.73
PRK09496	453	trkA potassium transporter peripheral membrane com	89.68
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.64
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	89.57
PLN02256	304	arogenate dehydrogenase	89.5
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	89.5
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	89.48
PRK10083	339	putative oxidoreductase; Provisional	89.36
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	89.16
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	89.1
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	89.06
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	89.06
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	89.05
KOG2078	495	consensus tRNA modification enzyme [RNA processing	88.98
PRK08324	681	short chain dehydrogenase; Validated	88.63
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	88.55
PRK08655	437	prephenate dehydrogenase; Provisional	88.54
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	88.49
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.31
PRK08507	275	prephenate dehydrogenase; Validated	88.23
PRK08306	296	dipicolinate synthase subunit A; Reviewed	88.15
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	88.12
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	87.92
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	87.88
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	87.85
PRK06940	275	short chain dehydrogenase; Provisional	87.83
PRK08114	395	cystathionine beta-lyase; Provisional	87.83
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	87.82
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	87.79
KOG2782	303	consensus Putative SAM dependent methyltransferase	87.57
PLN02494	477	adenosylhomocysteinase	87.5
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	87.48
PRK07109	334	short chain dehydrogenase; Provisional	87.46
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	87.4
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	87.23
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	87.17
PRK09496	453	trkA potassium transporter peripheral membrane com	87.13
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	87.06
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	87.04
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	87.02
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	86.94
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	86.9
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	86.88
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	86.8
TIGR00853	95	pts-lac PTS system, lactose/cellobiose family IIB	86.77
PLN02514	357	cinnamyl-alcohol dehydrogenase	86.76
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	86.73
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	86.73
COG4121	252	Uncharacterized conserved protein [Function unknow	86.73
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	86.64
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	86.59
KOG3924	419	consensus Putative protein methyltransferase invol	86.55
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	86.52
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	86.49
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	86.37
PRK10669	558	putative cation:proton antiport protein; Provision	86.37
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	86.25
PRK07680	273	late competence protein ComER; Validated	86.21
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	86.1
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	86.08
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	86.06
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	86.03
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	85.99
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	85.98
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	85.95
PF12242	78	Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2	85.82
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	85.72
PRK07063	260	short chain dehydrogenase; Provisional	85.7
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	85.67
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	85.58
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	85.51
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	85.5
TIGR00497	501	hsdM type I restriction system adenine methylase (	85.46
PRK03659	601	glutathione-regulated potassium-efflux system prot	85.42
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	85.25
PRK15116	268	sulfur acceptor protein CsdL; Provisional	85.14
PRK06172	253	short chain dehydrogenase; Provisional	85.12
PRK05854	313	short chain dehydrogenase; Provisional	85.11
PRK08818	370	prephenate dehydrogenase; Provisional	84.92
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	84.88
PLN02178	375	cinnamyl-alcohol dehydrogenase	84.88
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	84.81
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	84.81
PRK06914	280	short chain dehydrogenase; Provisional	84.81
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	84.64
PRK07877	722	hypothetical protein; Provisional	84.63
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	84.59
PF08351	92	DUF1726: Domain of unknown function (DUF1726); Int	84.46
PF14740	289	DUF4471: Domain of unknown function (DUF4471)	84.44
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	84.36
PRK08328	231	hypothetical protein; Provisional	84.32
KOG2015	422	consensus NEDD8-activating complex, catalytic comp	84.28
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	84.24
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	84.08
PLN02702	364	L-idonate 5-dehydrogenase	84.06
PRK07904	253	short chain dehydrogenase; Provisional	83.85
PRK08213	259	gluconate 5-dehydrogenase; Provisional	83.85
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	83.78
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	83.77
PTZ00354	334	alcohol dehydrogenase; Provisional	83.63
KOG2920	282	consensus Predicted methyltransferase [General fun	83.5
PRK03562	621	glutathione-regulated potassium-efflux system prot	83.47
PRK05867	253	short chain dehydrogenase; Provisional	83.29

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=100.00  E-value=5e-41  Score=274.12  Aligned_cols=224  Identities=59%  Similarity=1.057  Sum_probs=198.3

Q ss_pred             CCCcHHHHHHHHhccCCCCCChHHHHHHHHHhcCCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCC
Q 026461           14 LLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP   93 (238)
Q Consensus        14 ~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~   93 (238)
                      ....+.+++|+.+++..+.+++.+.++++.+.+++++.+.+.+..+++|..+++..++++|||||+++|++|++++..++
T Consensus        23 ~~~~~~i~~Y~~~~~~~~~~~~~L~~l~~~a~~~~~~~~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~  102 (247)
T PLN02589         23 LLQSDALYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALP  102 (247)
T ss_pred             ccCcHHHHHHHHHhccCCCCCHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCC
Confidence            34568999999988777888999999999999988888888999999999999999999999999999999999999998


Q ss_pred             CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCC
Q 026461           94 EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV  173 (238)
Q Consensus        94 ~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~  173 (238)
                      ++++|+++|.+++.++.|+++++++|+.++|+++.+++.+.++.+..++...++||+||+|+++..|..+++.+.++|++
T Consensus       103 ~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~  182 (247)
T PLN02589        103 EDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKV  182 (247)
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCC
Confidence            88999999999999999999999999999999999999999998754311136999999999999999999999999999


Q ss_pred             CeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEc
Q 026461          174 GGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  237 (238)
Q Consensus       174 gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~  237 (238)
                      ||+|++||++|+|.+.++....++.........+++|++.+.++|+|+++++|+|||+.+++|+
T Consensus       183 GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~~~~llPigDGl~l~~k~  246 (247)
T PLN02589        183 GGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI  246 (247)
T ss_pred             CeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCccEEEEEe
Confidence            9999999999999998875322221111022358899999999999999999999999999996

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=100.00  E-value=3e-41  Score=268.83  Aligned_cols=199  Identities=44%  Similarity=0.797  Sum_probs=178.9

Q ss_pred             CCChHHHHHHHHHhcCC-CCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHH
Q 026461           32 REPEPLKKIRDVTADHP-WAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI  110 (238)
Q Consensus        32 ~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~  110 (238)
                      .+++.++++++.+.... ++.+.+.+..+++|..+++..++++||||||++|++|++||+++|++++|+++|++++.++.
T Consensus         6 ~~~~~l~~l~~~t~~~~~~~~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~   85 (205)
T PF01596_consen    6 REPELLKELREFTRENQGLPQMSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEI   85 (205)
T ss_dssp             CSTHHHHHHHHHHHCTTTTGGGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHH
T ss_pred             CCCHHHHHHHHHHHhCcCCCCCccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHH
Confidence            47889999999988764 77888999999999999999999999999999999999999999988999999999999999


Q ss_pred             HHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccccCccccC
Q 026461          111 GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAV  190 (238)
Q Consensus       111 a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~  190 (238)
                      |+++++++|+.++|+++.+|+.+.++.+..+. ..++||+||+|+.+..|..+++.+.++|+|||+|++||++|+|.+..
T Consensus        86 A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~-~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~  164 (205)
T PF01596_consen   86 ARENFRKAGLDDRIEVIEGDALEVLPELANDG-EEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVAD  164 (205)
T ss_dssp             HHHHHHHTTGGGGEEEEES-HHHHHHHHHHTT-TTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGS
T ss_pred             HHHHHHhcCCCCcEEEEEeccHhhHHHHHhcc-CCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEccccccceecC
Confidence            99999999999999999999999999886541 13689999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEc
Q 026461          191 PEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  237 (238)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~  237 (238)
                      +....+      ....+++|++++.++|+|+++++|+|||+.|++||
T Consensus       165 ~~~~~~------~~~~ir~f~~~i~~d~~~~~~llpigdGl~l~~K~  205 (205)
T PF01596_consen  165 PDDEDP------KTVAIREFNEYIANDPRFETVLLPIGDGLTLARKR  205 (205)
T ss_dssp             TTGGSH------HHHHHHHHHHHHHH-TTEEEEEECSTTEEEEEEE-
T ss_pred             ccchhh------hHHHHHHHHHHHHhCCCeeEEEEEeCCeeEEEEEC
Confidence            843321      45559999999999999999999999999999996

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PLN02476 O-methyltransferase

Probab=100.00  E-value=3.6e-39  Score=266.13  Aligned_cols=215  Identities=40%  Similarity=0.680  Sum_probs=193.4

Q ss_pred             CCCCcHHHHHHHHhccCCCCCChHHHHHHHHHhcCCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhC
Q 026461           13 GLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI   92 (238)
Q Consensus        13 ~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~   92 (238)
                      .....+.+++|+.++   .++++.+.++++.+.++..+.+.+.+..++++..+++..++++|||||||+|++|++++..+
T Consensus        64 ~~~~~~~i~~Y~~~~---~~~~~~L~~l~e~a~~~~~~~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al  140 (278)
T PLN02476         64 VISLTPRLYDYVLSN---VREPKILRQLREETSKMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVL  140 (278)
T ss_pred             cccchHHHHHHHHhc---CCCCHHHHHHHHHHHhccCCccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhC
Confidence            344557999999984   25788999999999988777888999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccC
Q 026461           93 PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLK  172 (238)
Q Consensus        93 ~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~  172 (238)
                      ++.++|+++|.+++.++.|+++++++|+.++++++.+|+.+.++.+..+ ...++||+||+|+++..|..+++.+.++|+
T Consensus       141 ~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~-~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~  219 (278)
T PLN02476        141 PESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQN-GEGSSYDFAFVDADKRMYQDYFELLLQLVR  219 (278)
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc-ccCCCCCEEEECCCHHHHHHHHHHHHHhcC
Confidence            8889999999999999999999999999999999999999999886432 113689999999999999999999999999


Q ss_pred             CCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEc
Q 026461          173 VGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  237 (238)
Q Consensus       173 ~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~  237 (238)
                      |||+|++||++|+|.+.++....+      .+.++++|++++.++|+++++++|+|||+.|++|+
T Consensus       220 ~GGvIV~DNvL~~G~V~d~~~~d~------~t~~ir~fn~~v~~d~~~~~~llPigDGl~i~~K~  278 (278)
T PLN02476        220 VGGVIVMDNVLWHGRVADPLVNDA------KTISIRNFNKKLMDDKRVSISMVPIGDGMTICRKR  278 (278)
T ss_pred             CCcEEEEecCccCCcccCcccCCH------HHHHHHHHHHHHhhCCCEEEEEEEeCCeeEEEEEC
Confidence            999999999999999988754321      35679999999999999999999999999999985

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=100.00  E-value=7.5e-39  Score=261.35  Aligned_cols=220  Identities=58%  Similarity=0.999  Sum_probs=196.6

Q ss_pred             CcHHHHHHHHhccCCCCCChHHHHHHHHHhcC--CCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCC
Q 026461           16 QSEDLYRYILETSVYPREPEPLKKIRDVTADH--PWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP   93 (238)
Q Consensus        16 ~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~   93 (238)
                      ..+.++.|+.+++.++++++.+.++++.+.++  ..+.+.+.+..+++|..+++..++++|||||||+|+++++++..++
T Consensus        12 ~~~~~~~y~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~   91 (234)
T PLN02781         12 KSEALKQYIMETSAYPREHELLKELREATVQKYGNLSEMEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALP   91 (234)
T ss_pred             CcHHHHHHHHHhccCCCCCHHHHHHHHHHHhccccCcccccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCC
Confidence            34789999998776678899999999998866  3455678899999999999999999999999999999999999988


Q ss_pred             CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCC
Q 026461           94 EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV  173 (238)
Q Consensus        94 ~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~  173 (238)
                      +.++|+++|+++++++.|+++++++|+.++++++.+|+.+.++.+.++ +..++||+||+|+.+..+..+++.+.++|+|
T Consensus        92 ~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~-~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~  170 (234)
T PLN02781         92 EDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNN-DPKPEFDFAFVDADKPNYVHFHEQLLKLVKV  170 (234)
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhC-CCCCCCCEEEECCCHHHHHHHHHHHHHhcCC
Confidence            789999999999999999999999999999999999999998876432 1136899999999999999999999999999


Q ss_pred             CeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEc
Q 026461          174 GGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  237 (238)
Q Consensus       174 gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~  237 (238)
                      ||+|+++|++|+|.+.++....+++.+. .++.+++|++++.++|+++++++|+|||+.|++|+
T Consensus       171 GG~ii~dn~l~~G~v~~~~~~~~~~~~~-~~~~ir~~~~~i~~~~~~~~~~lp~gdG~~i~~k~  233 (234)
T PLN02781        171 GGIIAFDNTLWFGFVAQEEDEVPEHMRA-YRKALLEFNKLLASDPRVEISQISIGDGVTLCRRL  233 (234)
T ss_pred             CeEEEEEcCCcCCeecCcccccchhhhH-HHHHHHHHHHHHhhCCCeEEEEEEeCCccEEEEEe
Confidence            9999999999999999886544444554 67889999999999999999999999999999986

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=100.00  E-value=1.8e-38  Score=252.60  Aligned_cols=214  Identities=37%  Similarity=0.622  Sum_probs=188.1

Q ss_pred             CCCCcHHHHHHHHhccCCCCCChHHHHHHHHHhcCCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhC
Q 026461           13 GLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI   92 (238)
Q Consensus        13 ~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~   92 (238)
                      .....+.+..|+.++.. ...+..++++++.+.+.+.+..  .++.+++|..+++..++++|||||++.|+|++|||..+
T Consensus         5 ~~~~~~~l~~y~~~~~~-~~~~~~~~~~~e~a~~~~~pi~--~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l   81 (219)
T COG4122           5 MPNMDEDLYDYLEALIP-GEPPALLAELEEFARENGVPII--DPETGALLRLLARLSGPKRILEIGTAIGYSALWMALAL   81 (219)
T ss_pred             cccchHHHHHHHHhhcc-cCCchHHHHHHHHhHhcCCCCC--ChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhC
Confidence            44566899999999642 1355677888888887766554  49999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe-cchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhcc
Q 026461           93 PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL  171 (238)
Q Consensus        93 ~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L  171 (238)
                      |.++++++||++++.++.|++++++.|+.++++++. +|+.+.+...     ..++||+||+|+++..|+++++.+.++|
T Consensus        82 ~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~-----~~~~fDliFIDadK~~yp~~le~~~~lL  156 (219)
T COG4122          82 PDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL-----LDGSFDLVFIDADKADYPEYLERALPLL  156 (219)
T ss_pred             CCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc-----cCCCccEEEEeCChhhCHHHHHHHHHHh
Confidence            988999999999999999999999999999999998 6999988762     2689999999999999999999999999


Q ss_pred             CCCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEcC
Q 026461          172 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF  238 (238)
Q Consensus       172 ~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~~  238 (238)
                      +|||+|++||++|+|.+.++.-   +..+. ....++.|+.++.++|+++++++|+|||+.+++|++
T Consensus       157 r~GGliv~DNvl~~G~v~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~t~~lP~gDGl~v~~k~~  219 (219)
T COG4122         157 RPGGLIVADNVLFGGRVADPSI---RDART-QVRGVRDFNDYLLEDPRYDTVLLPLGDGLLLSRKRG  219 (219)
T ss_pred             CCCcEEEEeecccCCccCCccc---hhHHH-HHHHHHHHHHHHhhCcCceeEEEecCCceEEEeecC
Confidence            9999999999999999888742   22233 566699999999999999999999999999999974

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=4.5e-38  Score=247.31  Aligned_cols=228  Identities=55%  Similarity=0.921  Sum_probs=207.3

Q ss_pred             HHHHhhhhc-CCCCcHHHHHHHHhccCCCCCChHHHHHHHHHhcC--CCCCccCcHhHHHHHHHHHhhcCCCEEEEEccc
Q 026461            4 KAKQAASSK-GLLQSEDLYRYILETSVYPREPEPLKKIRDVTADH--PWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVF   80 (238)
Q Consensus         4 ~~~~~~~~~-~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G   80 (238)
                      ..+..+..+ ....++.++.|+.+++..+.+++.++++++.+..+  ..+.|.+.++.++++..+++..+++++||||+.
T Consensus         4 ~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~l~el~e~t~~~~~~~~~m~v~~d~g~fl~~li~~~~ak~~lelGvf   83 (237)
T KOG1663|consen    4 KLDNEVPDKRLILSDPRLYQYILETTHYPREPELLKELREATLTYPQPGSEMLVGPDKGQFLQMLIRLLNAKRTLELGVF   83 (237)
T ss_pred             cccccCcchhcccccchhhhhhhhcccccCCcHHHHHHHHHHhhcCCcccceecChHHHHHHHHHHHHhCCceEEEEecc
Confidence            334444444 77788999999999999999999999999999877  467789999999999999999999999999999


Q ss_pred             ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccch
Q 026461           81 TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY  160 (238)
Q Consensus        81 ~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~  160 (238)
                      +|++++.+|..+|++++|+++|++++.++.+.+..+.+|...+|+++++++.+.++++.++. +.++||++|+|+++..|
T Consensus        84 TGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~-~~~tfDfaFvDadK~nY  162 (237)
T KOG1663|consen   84 TGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADG-ESGTFDFAFVDADKDNY  162 (237)
T ss_pred             cCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcC-CCCceeEEEEccchHHH
Confidence            99999999999999999999999999999999999999999999999999999999987763 57899999999999999


Q ss_pred             HHHHHHHHhccCCCeEEEEeccccCccccCCCCCCCCCcccchHHHHH---HHHHHhhcCCCeeEEeeecCCeeEEEEEc
Q 026461          161 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAIL---DLNRSLADDPRVQLSHVALGDGITICRRI  237 (238)
Q Consensus       161 ~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~lp~~~G~~i~~~~  237 (238)
                      ..+++.+.++||+||+|++||++|+|.+..|....+.+.+.     ++   ++|+.|..||+++...+|+|+|+.+|+|+
T Consensus       163 ~~y~e~~l~Llr~GGvi~~DNvl~~G~v~~p~~~~~~~~~~-----~r~~~~~n~~l~~D~rV~~s~~~igdG~~i~~k~  237 (237)
T KOG1663|consen  163 SNYYERLLRLLRVGGVIVVDNVLWPGVVADPDVNTPVRGRS-----IREALNLNKKLARDPRVYISLLPIGDGITICRKR  237 (237)
T ss_pred             HHHHHHHHhhcccccEEEEeccccCCcccCcccCCCcchhh-----hhhhhhhhhHhccCcceeeEeeeccCceeeeccC
Confidence            99999999999999999999999999888887665544443     66   99999999999999999999999999985

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.77  E-value=2.5e-18  Score=124.55  Aligned_cols=104  Identities=22%  Similarity=0.361  Sum_probs=87.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      ++.+|||||||+|..++++++..+ ..+|+++|+++++++.+++++...+..++++++++|+ ......      .++||
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~------~~~~D   72 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF------LEPFD   72 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT------SSCEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc------CCCCC
Confidence            467899999999999999999655 8899999999999999999998888889999999999 332222      57899


Q ss_pred             EEEEcC-Cccc------hHHHHHHHHhccCCCeEEEEec
Q 026461          150 YAFVDA-DKDN------YCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       150 ~V~~d~-~~~~------~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      +|++.. ....      ...+++.+.++|+|||+++++.
T Consensus        73 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   73 LVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             EEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            999988 3222      2456899999999999999874

...

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.74  E-value=4.2e-17  Score=130.87  Aligned_cols=168  Identities=21%  Similarity=0.321  Sum_probs=114.8

Q ss_pred             CchHHHHhhhhcCCCCcHHHHHHHHhccCCCCCChHHHHHHHHHhc-CCCC----CccCcHhHHHHHHHHHhhcCCCEEE
Q 026461            1 MTDKAKQAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTAD-HPWA----MMGTAPDAGQLMAMLLRLVNAKKTI   75 (238)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~-~~~~----~~~~~~~~~~~l~~l~~~~~~~~vL   75 (238)
                      |..+-+..+..+....+.++.+-+.+   .|.+.-....++..+.. ..++    .....+.....+..++...+..+||
T Consensus         1 ~~~~lv~~~~~~~~v~~~~v~~a~~~---vpR~~fv~~~~~~~ay~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~VL   77 (205)
T PRK13944          1 MAKRLVEELVREGIIKSERVKKAMLS---VPREEFVMPEYRMMAYEDRPLPLFAGATISAPHMVAMMCELIEPRPGMKIL   77 (205)
T ss_pred             CHHHHHHHHHHcCCcCCHHHHHHHHh---CCHhHcCChhHHhcCccCCCcccCCCCEechHHHHHHHHHhcCCCCCCEEE
Confidence            44444555555555567777777765   33332222222222221 1111    1223343333333444455667999


Q ss_pred             EEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcC
Q 026461           76 EIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA  155 (238)
Q Consensus        76 eiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~  155 (238)
                      |||||+|+.+..+++.+++.++|+++|+++++++.+++++...++.++++++.+|+.+.++.       ..+||+|+++.
T Consensus        78 DiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-------~~~fD~Ii~~~  150 (205)
T PRK13944         78 EVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-------HAPFDAIIVTA  150 (205)
T ss_pred             EECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-------CCCccEEEEcc
Confidence            99999999999999987657899999999999999999999988877899999998765432       36999999997


Q ss_pred             CccchHHHHHHHHhccCCCeEEEEec
Q 026461          156 DKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       156 ~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      .....+   +.+.+.|+|||.+++..
T Consensus       151 ~~~~~~---~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        151 AASTIP---SALVRQLKDGGVLVIPV  173 (205)
T ss_pred             Ccchhh---HHHHHhcCcCcEEEEEE
Confidence            654443   56778999999998853

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.73  E-value=2.9e-16  Score=121.25  Aligned_cols=121  Identities=26%  Similarity=0.270  Sum_probs=104.9

Q ss_pred             cCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           53 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      ...++.-.+.-..+...+..+++|||||+|..++.++...| .++|++||-++++++..++|++++|. ++++++.+++.
T Consensus        17 ~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p-~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap   94 (187)
T COG2242          17 MTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAP   94 (187)
T ss_pred             CcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccch
Confidence            34555555555556677888999999999999999995554 99999999999999999999999995 66999999999


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      +.++.+       ..+|.||+.+. ......++.++..|+|||.||++-+.
T Consensus        95 ~~L~~~-------~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~nait  137 (187)
T COG2242          95 EALPDL-------PSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAIT  137 (187)
T ss_pred             HhhcCC-------CCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence            988854       48999999988 88999999999999999999998655

>PRK04457 spermidine synthase; Provisional

Probab=99.73  E-value=4.2e-16  Score=129.41  Aligned_cols=118  Identities=18%  Similarity=0.226  Sum_probs=97.6

Q ss_pred             HhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHH
Q 026461           56 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL  135 (238)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l  135 (238)
                      +....++..+....++++|||||||+|..+.+++...| ..+|+++|+++++++.|++++...+..++++++.+|+.+++
T Consensus        52 ~y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l  130 (262)
T PRK04457         52 AYTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYI  130 (262)
T ss_pred             HHHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHH
Confidence            34444545555456788999999999999999999886 88999999999999999999876555578999999999988


Q ss_pred             HHHHhcccCCCCeeEEEEcCCccc-------hHHHHHHHHhccCCCeEEEEe
Q 026461          136 DQLLKYSENEGSFDYAFVDADKDN-------YCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       136 ~~~~~~~~~~~~fD~V~~d~~~~~-------~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      +..      .++||+|++|.....       ..++++.+.+.|+|||+++++
T Consensus       131 ~~~------~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin  176 (262)
T PRK04457        131 AVH------RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN  176 (262)
T ss_pred             HhC------CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence            754      478999999863221       368999999999999999996

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.72  E-value=2.4e-16  Score=115.92  Aligned_cols=109  Identities=24%  Similarity=0.301  Sum_probs=91.9

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhccc
Q 026461           64 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE  143 (238)
Q Consensus        64 ~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~  143 (238)
                      ......+..+|||+|||+|..+..+++..+ ..+|+++|+++.+++.+++++...++. +++++.+|+.+.++..     
T Consensus        13 ~~~~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~-----   85 (124)
T TIGR02469        13 SKLRLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDS-----   85 (124)
T ss_pred             HHcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhh-----
Confidence            334445567999999999999999999887 589999999999999999999988765 5899988876543332     


Q ss_pred             CCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                       .++||+|+++........+++.+.+.|+|||.++++
T Consensus        86 -~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        86 -LPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             -cCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence             469999999877667788999999999999999986

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.71  E-value=3e-16  Score=139.27  Aligned_cols=164  Identities=23%  Similarity=0.263  Sum_probs=122.6

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      ++.....++..++...++.+|||+|||+|+.|.++++.+.+.++|+++|+++.+++.+++++...|+.+ ++++++|+.+
T Consensus       236 ~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~  314 (434)
T PRK14901        236 VQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRN  314 (434)
T ss_pred             EECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhh
Confidence            344455666666666677899999999999999999987657899999999999999999999999864 9999999876


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCccc-------------------------hHHHHHHHHhccCCCeEEEEeccccCccc
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLWGGTV  188 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~~g~~  188 (238)
                      ......   ...++||.|++|++++.                         ...++..++++|||||.++...+..    
T Consensus       315 ~~~~~~---~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi----  387 (434)
T PRK14901        315 LLELKP---QWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL----  387 (434)
T ss_pred             cccccc---cccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC----
Confidence            532110   01368999999975421                         1356788889999999999876553    


Q ss_pred             cCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEE-----eeec---CCeeEEEEEcC
Q 026461          189 AVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLS-----HVAL---GDGITICRRIF  238 (238)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~lp~---~~G~~i~~~~~  238 (238)
                       .++++            ......++..+|+|+..     ++|.   .||+++|+.+|
T Consensus       388 -~~~En------------e~~v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l~k  432 (434)
T PRK14901        388 -HPAEN------------EAQIEQFLARHPDWKLEPPKQKIWPHRQDGDGFFMAVLRK  432 (434)
T ss_pred             -ChhhH------------HHHHHHHHHhCCCcEecCCCCccCCCCCCCCcEEEEEEEe
Confidence             12222            44455567778888755     4564   39999998764

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.71  E-value=7.9e-16  Score=121.78  Aligned_cols=120  Identities=28%  Similarity=0.295  Sum_probs=97.5

Q ss_pred             cCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           53 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      .+.+....++...+...++.+|||+|||+|..++.++...+ ..+|+++|+++.+++.+++++...++. +++++.+|+.
T Consensus        14 ~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~   91 (187)
T PRK08287         14 MTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAP   91 (187)
T ss_pred             CchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCch
Confidence            34455555554455566778999999999999999998876 789999999999999999999988874 5999998874


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ..   +      .++||+|+++.....+..+++.+.+.|+|||.++++...
T Consensus        92 ~~---~------~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~  133 (187)
T PRK08287         92 IE---L------PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFIL  133 (187)
T ss_pred             hh---c------CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEec
Confidence            22   2      368999999876667788999999999999999987543

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.70  E-value=9.1e-16  Score=135.83  Aligned_cols=126  Identities=21%  Similarity=0.302  Sum_probs=102.4

Q ss_pred             ccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461           52 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA  131 (238)
Q Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (238)
                      ..++....+++..++...++.+|||+|||+|+.|.+++..+.+.++|+++|+++.+++.+++++.+.|+. +++++++|+
T Consensus       219 ~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da  297 (431)
T PRK14903        219 ATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADA  297 (431)
T ss_pred             EEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECch
Confidence            3455666677777777777889999999999999999998866789999999999999999999999985 499999998


Q ss_pred             hHHHHHHHhcccCCCCeeEEEEcCCccc-------------------------hHHHHHHHHhccCCCeEEEEecccc
Q 026461          132 LSVLDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       132 ~~~l~~~~~~~~~~~~fD~V~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      .+.....      .++||.|++|+++..                         ..+.+..++++|+|||.++...+..
T Consensus       298 ~~l~~~~------~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  369 (431)
T PRK14903        298 ERLTEYV------QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV  369 (431)
T ss_pred             hhhhhhh------hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            7653222      468999999975421                         1345777889999999999887664

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.70  E-value=4.6e-16  Score=125.81  Aligned_cols=154  Identities=25%  Similarity=0.351  Sum_probs=108.7

Q ss_pred             CCCCcHHHHHHHHhccCCCCCChHHHHHHHHHhc-CC----CCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHH
Q 026461           13 GLLQSEDLYRYILETSVYPREPEPLKKIRDVTAD-HP----WAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLL   87 (238)
Q Consensus        13 ~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~-~~----~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~   87 (238)
                      ....+.++...+.+   .|.+.-....+...... ..    .+.....+.....+..++...++.+|||||||+|+.+..
T Consensus        18 ~~v~~~~v~~a~~~---v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~   94 (215)
T TIGR00080        18 GYIKSKRVIDALLS---VPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAV   94 (215)
T ss_pred             CCcCCHHHHHHHHh---CChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhCCCCcCEEEEECCCccHHHHH
Confidence            33456777777765   33332222222222221 11    122234444444444555677788999999999999999


Q ss_pred             HHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHH
Q 026461           88 TALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL  167 (238)
Q Consensus        88 la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~  167 (238)
                      +++..++.++|+++|+++++++.|++++...++ ++++++.+|+.+.++.       ..+||+|++++.....+   +.+
T Consensus        95 la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~-------~~~fD~Ii~~~~~~~~~---~~~  163 (215)
T TIGR00080        95 LAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEP-------LAPYDRIYVTAAGPKIP---EAL  163 (215)
T ss_pred             HHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcc-------cCCCCEEEEcCCccccc---HHH
Confidence            999876568899999999999999999999987 5699999998765432       36899999997654443   456


Q ss_pred             HhccCCCeEEEEe
Q 026461          168 MKLLKVGGIAVYD  180 (238)
Q Consensus       168 ~~~L~~gG~lv~~  180 (238)
                      .+.|+|||++++.
T Consensus       164 ~~~L~~gG~lv~~  176 (215)
T TIGR00080       164 IDQLKEGGILVMP  176 (215)
T ss_pred             HHhcCcCcEEEEE
Confidence            7899999999874

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.70  E-value=5.6e-16  Score=121.82  Aligned_cols=102  Identities=23%  Similarity=0.314  Sum_probs=88.0

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++.+|||+|||+|..++.++...+ .++|+++|.++.+++.+++++++.++. +++++++|+.+..  .      .++
T Consensus        40 ~~~~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~--~------~~~  109 (181)
T TIGR00138        40 YLDGKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQ--H------EEQ  109 (181)
T ss_pred             hcCCCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhcc--c------cCC
Confidence            34578999999999999999987655 689999999999999999999998875 5999999987751  1      479


Q ss_pred             eeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ||+|++++ ..++..+++.+.++|+|||.+++.
T Consensus       110 fD~I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~  141 (181)
T TIGR00138       110 FDVITSRA-LASLNVLLELTLNLLKVGGYFLAY  141 (181)
T ss_pred             ccEEEehh-hhCHHHHHHHHHHhcCCCCEEEEE
Confidence            99999987 566788889999999999999975

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.70  E-value=5.8e-16  Score=123.64  Aligned_cols=112  Identities=25%  Similarity=0.356  Sum_probs=96.3

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           65 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      .....+..+|||+|||+|..++.++...++.++|+++|+++.+++.+++++...++.+++.++.+|+.+.++..      
T Consensus        35 ~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~------  108 (198)
T PRK00377         35 KLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI------  108 (198)
T ss_pred             HcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc------
Confidence            34456778999999999999999998776578999999999999999999999887678999999998776654      


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      .+.||.||+......+..+++.+.+.|+|||.++++..
T Consensus       109 ~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (198)
T PRK00377        109 NEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAI  146 (198)
T ss_pred             CCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEee
Confidence            47899999987666788899999999999999998644

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.68  E-value=5.4e-16  Score=125.04  Aligned_cols=118  Identities=25%  Similarity=0.339  Sum_probs=96.5

Q ss_pred             ccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461           52 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA  131 (238)
Q Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (238)
                      ..+.|.....+...+...+..+|||||||+|+.+..+++.+++.++|+++|+++++++.+++++...++ .+++++++|+
T Consensus        58 ~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~  136 (212)
T PRK13942         58 TISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDG  136 (212)
T ss_pred             EeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCc
Confidence            346666666666666777888999999999999999999876578999999999999999999999887 4699999998


Q ss_pred             hHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          132 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       132 ~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      .+.++.       .++||+|++++.....+   +.+.+.|+|||.+++.
T Consensus       137 ~~~~~~-------~~~fD~I~~~~~~~~~~---~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        137 TLGYEE-------NAPYDRIYVTAAGPDIP---KPLIEQLKDGGIMVIP  175 (212)
T ss_pred             ccCCCc-------CCCcCEEEECCCcccch---HHHHHhhCCCcEEEEE
Confidence            765332       47999999987654443   4567789999998884

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.68  E-value=2.3e-15  Score=125.31  Aligned_cols=124  Identities=15%  Similarity=0.198  Sum_probs=98.6

Q ss_pred             ccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461           52 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA  131 (238)
Q Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (238)
                      ..++.....+...++...++.+|||+|||+|..|..+++.+.+.++|+++|+++.+++.++++++..++. +++++..|+
T Consensus        53 ~~~qd~~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~  131 (264)
T TIGR00446        53 YYIQEASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDG  131 (264)
T ss_pred             EEEECHHHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCH
Confidence            3345555666556666667789999999999999999998876789999999999999999999999985 599999998


Q ss_pred             hHHHHHHHhcccCCCCeeEEEEcCCccc-------------------------hHHHHHHHHhccCCCeEEEEeccc
Q 026461          132 LSVLDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       132 ~~~l~~~~~~~~~~~~fD~V~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ......       .+.||.|++|.+...                         ..++++.++++|+|||+|+...+.
T Consensus       132 ~~~~~~-------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs  201 (264)
T TIGR00446       132 RVFGAA-------VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS  201 (264)
T ss_pred             HHhhhh-------ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            765322       357999999965432                         134777778999999999976554

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=3.6e-16  Score=123.22  Aligned_cols=118  Identities=23%  Similarity=0.292  Sum_probs=99.9

Q ss_pred             CCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe
Q 026461           49 WAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE  128 (238)
Q Consensus        49 ~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~  128 (238)
                      .+...+.|.....+-.++...+..+|||||||+||.+.-|++..   ++|+++|..++.++.|++++...|+.+ |.+.+
T Consensus        51 ~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~  126 (209)
T COG2518          51 CGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYEN-VTVRH  126 (209)
T ss_pred             CCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEE
Confidence            34455777776677777788899999999999999999999975   499999999999999999999999976 99999


Q ss_pred             cchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          129 SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       129 ~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      +|...-++.       ..+||.|++.+.....++   .+.+.|++||.+++-
T Consensus       127 gDG~~G~~~-------~aPyD~I~Vtaaa~~vP~---~Ll~QL~~gGrlv~P  168 (209)
T COG2518         127 GDGSKGWPE-------EAPYDRIIVTAAAPEVPE---ALLDQLKPGGRLVIP  168 (209)
T ss_pred             CCcccCCCC-------CCCcCEEEEeeccCCCCH---HHHHhcccCCEEEEE
Confidence            999887665       489999999986666554   367889999999984

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.68  E-value=1.7e-15  Score=122.82  Aligned_cols=121  Identities=20%  Similarity=0.277  Sum_probs=101.5

Q ss_pred             cHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH
Q 026461           55 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV  134 (238)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (238)
                      .....+.+..+....++.+|||+|||||-.++.+++..+ .++|+++|+|+.+++.|++.+...+..+ ++|+++|+.++
T Consensus        36 ~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~L  113 (238)
T COG2226          36 HRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENL  113 (238)
T ss_pred             hHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhC
Confidence            344444555555555789999999999999999999988 8999999999999999999999988877 99999999776


Q ss_pred             HHHHHhcccCCCCeeEEEEcC---CccchHHHHHHHHhccCCCeEEEEecccc
Q 026461          135 LDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       135 l~~~~~~~~~~~~fD~V~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      .       +++.+||+|.+.-   ...+.+..++++.|.|||||.+++-+...
T Consensus       114 P-------f~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~  159 (238)
T COG2226         114 P-------FPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK  159 (238)
T ss_pred             C-------CCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence            2       2478999999874   45577889999999999999988876653

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.68  E-value=1.1e-15  Score=120.53  Aligned_cols=101  Identities=18%  Similarity=0.260  Sum_probs=88.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      ++.+|||+|||+|..++.++...+ .++|+++|+++++++.|+++++..++.+ ++++++|+.+...        .++||
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~--------~~~fD  114 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ--------EEKFD  114 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC--------CCCcc
Confidence            478999999999999999998766 7899999999999999999999999865 9999999877421        36999


Q ss_pred             EEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          150 YAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       150 ~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      +|++++ ...+..+++.+.+.|+|||.+++-.
T Consensus       115 lV~~~~-~~~~~~~l~~~~~~LkpGG~lv~~~  145 (187)
T PRK00107        115 VVTSRA-VASLSDLVELCLPLLKPGGRFLALK  145 (187)
T ss_pred             EEEEcc-ccCHHHHHHHHHHhcCCCeEEEEEe
Confidence            999986 3567889999999999999998753

>PLN03075 nicotianamine synthase; Provisional

Probab=99.67  E-value=5.9e-16  Score=129.03  Aligned_cols=117  Identities=14%  Similarity=0.198  Sum_probs=94.4

Q ss_pred             hHHHHHHHHHhhcCCCEEEEEccccc-HHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHH-cCCCCcEEEEecchhHH
Q 026461           57 DAGQLMAMLLRLVNAKKTIEIGVFTG-YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK-AGVDHKINFIESEALSV  134 (238)
Q Consensus        57 ~~~~~l~~l~~~~~~~~vLeiG~G~G-~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~  134 (238)
                      ....+|..+... ++++|+|||||.| ++++.++....++++++++|+++++++.|++++.. .++.++++|..+|+.+.
T Consensus       111 lE~~~L~~~~~~-~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~  189 (296)
T PLN03075        111 LEFDLLSQHVNG-VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDV  189 (296)
T ss_pred             HHHHHHHHhhcC-CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhc
Confidence            344455555444 8899999999955 55666665554589999999999999999999964 88888999999999875


Q ss_pred             HHHHHhcccCCCCeeEEEEcC----CccchHHHHHHHHhccCCCeEEEEec
Q 026461          135 LDQLLKYSENEGSFDYAFVDA----DKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       135 l~~~~~~~~~~~~fD~V~~d~----~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      .+.       .+.||+||+++    .+......++.+.+.|+|||++++..
T Consensus       190 ~~~-------l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        190 TES-------LKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             ccc-------cCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            332       37899999985    24678899999999999999999976

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.67  E-value=5.8e-16  Score=123.97  Aligned_cols=141  Identities=21%  Similarity=0.305  Sum_probs=105.8

Q ss_pred             CCCCChHHHHHHHHHhcCCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHH
Q 026461           30 YPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYE  109 (238)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~  109 (238)
                      |......+.+++..+...+++.  +.+........+..  ++.+|||+|||+|..+..++..++ ..+|+++|+++++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~   78 (202)
T PRK00121          4 FVRRRGRLTKGQQRAIEELWPR--LSPAPLDWAELFGN--DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVG   78 (202)
T ss_pred             chhhccccccchhhhhcccchh--hcCCCCCHHHHcCC--CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHH
Confidence            3444455666777766655543  45555555555544  667999999999999999998876 679999999999999


Q ss_pred             HHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCcc-----------chHHHHHHHHhccCCCeEEE
Q 026461          110 IGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----------NYCNYHERLMKLLKVGGIAV  178 (238)
Q Consensus       110 ~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~-----------~~~~~~~~~~~~L~~gG~lv  178 (238)
                      .+++++...++ .+++++++|+.+.++...    ..++||+|++.....           ....+++.+.+.|+|||+++
T Consensus        79 ~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~----~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~  153 (202)
T PRK00121         79 KALKKIEEEGL-TNLRLLCGDAVEVLLDMF----PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIH  153 (202)
T ss_pred             HHHHHHHHcCC-CCEEEEecCHHHHHHHHc----CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEE
Confidence            99999988877 569999999944444221    247899999853211           14678999999999999998


Q ss_pred             Ee
Q 026461          179 YD  180 (238)
Q Consensus       179 ~~  180 (238)
                      +.
T Consensus       154 i~  155 (202)
T PRK00121        154 FA  155 (202)
T ss_pred             EE
Confidence            74

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.67  E-value=2.3e-15  Score=134.18  Aligned_cols=126  Identities=21%  Similarity=0.266  Sum_probs=101.4

Q ss_pred             ccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461           52 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA  131 (238)
Q Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (238)
                      ..++.....++..++...++.+|||+|||+|..++++++.+++.++|+++|+++.+++.+++++.+.|+.+ ++++++|+
T Consensus       232 ~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~  310 (444)
T PRK14902        232 ITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDA  310 (444)
T ss_pred             EEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCc
Confidence            33455666677777766677899999999999999999987557899999999999999999999999865 99999998


Q ss_pred             hHHHHHHHhcccCCCCeeEEEEcCCccc-------------------------hHHHHHHHHhccCCCeEEEEecccc
Q 026461          132 LSVLDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       132 ~~~l~~~~~~~~~~~~fD~V~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      .+..+.+      .++||+|++|++...                         ...+++.+.++|+|||.++...+..
T Consensus       311 ~~~~~~~------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  382 (444)
T PRK14902        311 RKVHEKF------AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI  382 (444)
T ss_pred             ccccchh------cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence            7764433      368999999975321                         1346788889999999999776543

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.67  E-value=3.4e-15  Score=119.00  Aligned_cols=125  Identities=23%  Similarity=0.251  Sum_probs=101.9

Q ss_pred             CCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec
Q 026461           50 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES  129 (238)
Q Consensus        50 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~  129 (238)
                      +.+...+....++...+...+..+|||+|||+|..+..++...+ .++|+++|+++++++.+++++...++. +++++.+
T Consensus        20 ~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~   97 (196)
T PRK07402         20 GIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEG   97 (196)
T ss_pred             CCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEEC
Confidence            44566777777766666666778999999999999999987665 689999999999999999999988874 5999999


Q ss_pred             chhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          130 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       130 d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      |+.+.++.+      ...+|.++++.. .....+++.+.+.|+|||.+++....
T Consensus        98 d~~~~~~~~------~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~~  144 (196)
T PRK07402         98 SAPECLAQL------APAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATASS  144 (196)
T ss_pred             chHHHHhhC------CCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEeec
Confidence            987755443      345788888753 35678899999999999999987543

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.66  E-value=2.9e-15  Score=133.39  Aligned_cols=122  Identities=24%  Similarity=0.245  Sum_probs=97.0

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      ++.....+...++...++.+|||+|||+|+.|.++++.++..++|+++|+++.+++.+++++...|+. +++++++|+.+
T Consensus       234 vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~  312 (445)
T PRK14904        234 VQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARS  312 (445)
T ss_pred             EeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccc
Confidence            34444555555555666789999999999999999998765689999999999999999999999985 59999999876


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCccc-------------------------hHHHHHHHHhccCCCeEEEEecccc
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      ..+        .++||.|++|.++..                         ...++..+.++|+|||+++...+..
T Consensus       313 ~~~--------~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~  380 (445)
T PRK14904        313 FSP--------EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI  380 (445)
T ss_pred             ccc--------CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            532        468999999864321                         1246788889999999999977653

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.66  E-value=1.5e-15  Score=116.17  Aligned_cols=108  Identities=27%  Similarity=0.397  Sum_probs=90.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHH-HHhcccCCCC
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ-LLKYSENEGS  147 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~-~~~~~~~~~~  147 (238)
                      .+..+|||+|||+|..+..++..+.+.++++|+|+++++++.|++.++..++. +++|+++|+.+ ++. +      .++
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~------~~~   73 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQEL------EEK   73 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGCS------STT
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-ccccc------CCC
Confidence            35789999999999999999965545899999999999999999999999987 79999999988 332 1      279


Q ss_pred             eeEEEEcCCc---cchHHHHHHHHhccCCCeEEEEecccc
Q 026461          148 FDYAFVDADK---DNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       148 fD~V~~d~~~---~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      ||+|++....   ......++.+.+.|+++|++++.+..+
T Consensus        74 ~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~  113 (152)
T PF13847_consen   74 FDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPNH  113 (152)
T ss_dssp             EEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEH
T ss_pred             eeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECCh
Confidence            9999998643   344578899999999999999887663

...

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.66  E-value=1.1e-15  Score=124.54  Aligned_cols=114  Identities=19%  Similarity=0.295  Sum_probs=83.3

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhc
Q 026461           62 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY  141 (238)
Q Consensus        62 l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~  141 (238)
                      +..+....++.+|||+|||+|..+..+++..++.++|+++|+++.+++.|++.+...+.. +++++++|+.++ + +   
T Consensus        39 ~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~l-p-~---  112 (233)
T PF01209_consen   39 LIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDL-P-F---  112 (233)
T ss_dssp             HHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB----S---
T ss_pred             HHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHh-c-C---
Confidence            333445667889999999999999999998876899999999999999999999988865 799999999876 2 1   


Q ss_pred             ccCCCCeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          142 SENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                        ++++||.|++.-.   ..+....++++.+.|||||.+++-+..
T Consensus       113 --~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~  155 (233)
T PF01209_consen  113 --PDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFS  155 (233)
T ss_dssp             ---TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             --CCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeecc
Confidence              2689999998743   445678999999999999998886654

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.65  E-value=6.4e-15  Score=130.57  Aligned_cols=162  Identities=21%  Similarity=0.269  Sum_probs=116.5

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      ++.....++..++...++.+|||+|||+|+.|.++++.++ .++|+++|+++++++.+++++++.|+..++.+..+|...
T Consensus       222 ~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~  300 (426)
T TIGR00563       222 VQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRG  300 (426)
T ss_pred             EECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccc
Confidence            3455666677677777788999999999999999999887 789999999999999999999999986445557777644


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCccc-------------------------hHHHHHHHHhccCCCeEEEEeccccCccc
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLWGGTV  188 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~~g~~  188 (238)
                      .....     ..++||.|++|+++..                         ...+++.++++|+|||.++...+...   
T Consensus       301 ~~~~~-----~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~---  372 (426)
T TIGR00563       301 PSQWA-----ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL---  372 (426)
T ss_pred             ccccc-----cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC---
Confidence            32110     1468999999964332                         14577888899999999998877642   


Q ss_pred             cCCCCCCCCCcccchHHHHHHHHHHhhcCCCee--------------EEeeec---CCeeEEEEEcC
Q 026461          189 AVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQ--------------LSHVAL---GDGITICRRIF  238 (238)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~lp~---~~G~~i~~~~~  238 (238)
                        ++++         ...++.|   +.++|++.              ..++|.   .||+++|+.+|
T Consensus       373 --~~En---------e~~v~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k  425 (426)
T TIGR00563       373 --PEEN---------SEQIKAF---LQEHPDFPFEKTGTPEQVRDGGLQILPHAEEGDGFFYAKLIK  425 (426)
T ss_pred             --hhhC---------HHHHHHH---HHhCCCCeeccCCCccccCCCcEEECCCCCCCCCeEEEEEEe
Confidence              2221         1224444   44566553              234563   49999998764

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.64  E-value=9.8e-15  Score=129.40  Aligned_cols=160  Identities=24%  Similarity=0.274  Sum_probs=116.8

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      ++...+.+...++...++.+|||+|||+|..+..+++..+ .++|+++|+++.+++.+++++...|+.  ++++++|+.+
T Consensus       228 iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~  304 (427)
T PRK10901        228 VQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARD  304 (427)
T ss_pred             EECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCccc
Confidence            4555566666666677788999999999999999999876 489999999999999999999998873  6899999876


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCccc-------------------------hHHHHHHHHhccCCCeEEEEeccccCccc
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLWGGTV  188 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~~g~~  188 (238)
                      .....     ..++||.|++|++...                         ...++..+.++|+|||.+++..+...   
T Consensus       305 ~~~~~-----~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~---  376 (427)
T PRK10901        305 PAQWW-----DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL---  376 (427)
T ss_pred             chhhc-----ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC---
Confidence            43222     1368999999975321                         12567788899999999998775431   


Q ss_pred             cCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEE-----------eeec---CCeeEEEEEcC
Q 026461          189 AVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLS-----------HVAL---GDGITICRRIF  238 (238)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------~lp~---~~G~~i~~~~~  238 (238)
                        +.++            ......++.++++++.+           ++|-   .||+++|+.+|
T Consensus       377 --~~En------------e~~v~~~l~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k  426 (427)
T PRK10901        377 --PEEN------------EQQIKAFLARHPDAELLDTGTPQQPGRQLLPGEEDGDGFFYALLIK  426 (427)
T ss_pred             --hhhC------------HHHHHHHHHhCCCCEEecCCCCCCCceEECCCCCCCCCeEEEEEEE
Confidence              2221            23344445566766533           3453   49999997553

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.64  E-value=1.9e-14  Score=120.92  Aligned_cols=119  Identities=14%  Similarity=0.272  Sum_probs=93.2

Q ss_pred             CcHhHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec
Q 026461           54 TAPDAGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES  129 (238)
Q Consensus        54 ~~~~~~~~l~~l~~----~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~  129 (238)
                      ..++.+.++...+.    ..++.+|||+|||+|..++.++...+ ..+|+++|+++.+++.|++++...++.++++++++
T Consensus       101 pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~  179 (284)
T TIGR03533       101 PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQS  179 (284)
T ss_pred             CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence            34455566655443    23457999999999999999999876 78999999999999999999999998778999999


Q ss_pred             chhHHHHHHHhcccCCCCeeEEEEcCCc----------------------------cchHHHHHHHHhccCCCeEEEEec
Q 026461          130 EALSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       130 d~~~~l~~~~~~~~~~~~fD~V~~d~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      |+.+.++        .++||+|+++.+.                            ..+..++..+.++|+|||.++++-
T Consensus       180 D~~~~~~--------~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~  251 (284)
T TIGR03533       180 DLFAALP--------GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV  251 (284)
T ss_pred             chhhccC--------CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            9865432        3589999997421                            012456777788999999999863

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.64  E-value=3.9e-15  Score=116.04  Aligned_cols=111  Identities=22%  Similarity=0.373  Sum_probs=89.5

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHH
Q 026461           59 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL  138 (238)
Q Consensus        59 ~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~  138 (238)
                      ..+|...+...+.++|||+|||+|..++.++...+ ..+|+++|+++.+++.+++++..+++.+ ++++.+|..+.++  
T Consensus        20 t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~--   95 (170)
T PF05175_consen   20 TRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP--   95 (170)
T ss_dssp             HHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC--
T ss_pred             HHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc--
Confidence            33444444444888999999999999999999877 6789999999999999999999999877 9999999876533  


Q ss_pred             HhcccCCCCeeEEEEcCCcc--------chHHHHHHHHhccCCCeEEEE
Q 026461          139 LKYSENEGSFDYAFVDADKD--------NYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       139 ~~~~~~~~~fD~V~~d~~~~--------~~~~~~~~~~~~L~~gG~lv~  179 (238)
                            .++||+|+++.+..        ....+++.+.++|+|||.+++
T Consensus        96 ------~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l  138 (170)
T PF05175_consen   96 ------DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL  138 (170)
T ss_dssp             ------TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ------ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence                  48999999986432        246778888899999998854

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=5.1e-15  Score=119.22  Aligned_cols=120  Identities=18%  Similarity=0.256  Sum_probs=105.5

Q ss_pred             CccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecc
Q 026461           51 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE  130 (238)
Q Consensus        51 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d  130 (238)
                      ...+.|....++.......+..+|+|.|+|+|..|.+||.+..+.++|+++|+.++.++.|++|++..++.+++++..+|
T Consensus        75 tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~D  154 (256)
T COG2519          75 TQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGD  154 (256)
T ss_pred             CceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecc
Confidence            34466767777777888999999999999999999999998887899999999999999999999999999889999999


Q ss_pred             hhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          131 ALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       131 ~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      +.+...        ...||.||+|-+  +..++++.+.+.|+|||.+++=
T Consensus       155 v~~~~~--------~~~vDav~LDmp--~PW~~le~~~~~Lkpgg~~~~y  194 (256)
T COG2519         155 VREGID--------EEDVDAVFLDLP--DPWNVLEHVSDALKPGGVVVVY  194 (256)
T ss_pred             cccccc--------ccccCEEEEcCC--ChHHHHHHHHHHhCCCcEEEEE
Confidence            988744        359999999954  5578899999999999999874

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.62  E-value=2e-15  Score=120.93  Aligned_cols=118  Identities=25%  Similarity=0.314  Sum_probs=90.1

Q ss_pred             ccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461           52 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA  131 (238)
Q Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (238)
                      ..+.|..-..+-.++...+..+|||||||+||.|..++....+.++|+++|+++..++.|++++...+.. ++.++++|.
T Consensus        54 ~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg  132 (209)
T PF01135_consen   54 TISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDG  132 (209)
T ss_dssp             EE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-G
T ss_pred             echHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcch
Confidence            3455655444444556778889999999999999999998776789999999999999999999999875 699999998


Q ss_pred             hHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          132 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       132 ~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ...++.       ..+||.|++.+.....+   ..+.+.|++||++|+-
T Consensus       133 ~~g~~~-------~apfD~I~v~~a~~~ip---~~l~~qL~~gGrLV~p  171 (209)
T PF01135_consen  133 SEGWPE-------EAPFDRIIVTAAVPEIP---EALLEQLKPGGRLVAP  171 (209)
T ss_dssp             GGTTGG-------G-SEEEEEESSBBSS-----HHHHHTEEEEEEEEEE
T ss_pred             hhcccc-------CCCcCEEEEeeccchHH---HHHHHhcCCCcEEEEE
Confidence            776554       37999999998666554   3467889999999984

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.62  E-value=8.2e-15  Score=121.49  Aligned_cols=103  Identities=18%  Similarity=0.220  Sum_probs=87.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .++.+|||+|||+|..+..++..   ..+|+++|+++++++.|++++...++.++++++++|+.+..+..      .++|
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~------~~~f  113 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL------ETPV  113 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc------CCCC
Confidence            35679999999999999999985   56999999999999999999999888788999999998764332      5799


Q ss_pred             eEEEEcCC---ccchHHHHHHHHhccCCCeEEEEe
Q 026461          149 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       149 D~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      |+|++...   ..+....++.+.+.|+|||++++-
T Consensus       114 D~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~  148 (255)
T PRK11036        114 DLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM  148 (255)
T ss_pred             CEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence            99998753   345567899999999999998763

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.60  E-value=6.1e-14  Score=118.97  Aligned_cols=117  Identities=15%  Similarity=0.286  Sum_probs=91.6

Q ss_pred             cHhHHHHHHHHHh-h-c--CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecc
Q 026461           55 APDAGQLMAMLLR-L-V--NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE  130 (238)
Q Consensus        55 ~~~~~~~l~~l~~-~-~--~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d  130 (238)
                      .+..+.++...+. . .  .+.+|||+|||+|..++.++...+ ..+|+++|+++.+++.|++++...++.++++++++|
T Consensus       114 r~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D  192 (307)
T PRK11805        114 RSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESD  192 (307)
T ss_pred             CCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECc
Confidence            3455555554432 1 1  236899999999999999999876 789999999999999999999999987789999999


Q ss_pred             hhHHHHHHHhcccCCCCeeEEEEcCCc----------------------------cchHHHHHHHHhccCCCeEEEEe
Q 026461          131 ALSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       131 ~~~~l~~~~~~~~~~~~fD~V~~d~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ..+.++        .++||+|+++.+.                            ..+..+++.+.+.|+|||.++++
T Consensus       193 ~~~~l~--------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E  262 (307)
T PRK11805        193 LFAALP--------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE  262 (307)
T ss_pred             hhhhCC--------CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            866432        3589999987421                            11245677778899999999986

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.60  E-value=1.4e-14  Score=120.71  Aligned_cols=110  Identities=22%  Similarity=0.322  Sum_probs=85.8

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           65 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      .+...++.+|||||||.|..++++++..  +.+|+|+.+|++..+.+++.+...|+.+++++..+|..++          
T Consensus        57 ~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~----------  124 (273)
T PF02353_consen   57 KLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL----------  124 (273)
T ss_dssp             TTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----------
T ss_pred             HhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc----------
Confidence            3456778899999999999999999986  5799999999999999999999999999999999998765          


Q ss_pred             CCCeeEEEEcC-----CccchHHHHHHHHhccCCCeEEEEeccccCc
Q 026461          145 EGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLWGG  186 (238)
Q Consensus       145 ~~~fD~V~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (238)
                      .++||.|+.-.     +..+++.+|+.+.++|+|||.++++.+....
T Consensus       125 ~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~  171 (273)
T PF02353_consen  125 PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRD  171 (273)
T ss_dssp             --S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred             CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence            46999998753     3456789999999999999999998776543

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.60  E-value=2.5e-14  Score=118.94  Aligned_cols=117  Identities=13%  Similarity=0.154  Sum_probs=90.7

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHH--cCCCCcEEEEecchhHHHHHH
Q 026461           61 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK--AGVDHKINFIESEALSVLDQL  138 (238)
Q Consensus        61 ~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~--~~~~~~v~~~~~d~~~~l~~~  138 (238)
                      .+..+....++.+|||+|||+|..+..+++..++.++|+++|+++++++.|++....  .+...+++++++|+.++ +  
T Consensus        64 ~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p--  140 (261)
T PLN02233         64 MAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-P--  140 (261)
T ss_pred             HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-C--
Confidence            333344556678999999999999999998775578999999999999999876532  22234699999998764 1  


Q ss_pred             HhcccCCCCeeEEEEcC---CccchHHHHHHHHhccCCCeEEEEecccc
Q 026461          139 LKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       139 ~~~~~~~~~fD~V~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                          ...++||+|++..   ...+....++++.+.|||||.+++.+...
T Consensus       141 ----~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~  185 (261)
T PLN02233        141 ----FDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK  185 (261)
T ss_pred             ----CCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence                1257899999864   34456788999999999999998876653

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.60  E-value=1.7e-14  Score=117.77  Aligned_cols=110  Identities=18%  Similarity=0.380  Sum_probs=90.4

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           65 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      .+...++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.+++++...++ ++++++.+|+.+..  +     .
T Consensus        40 ~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~--~-----~  111 (231)
T TIGR02752        40 RMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELP--F-----D  111 (231)
T ss_pred             hcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCC--C-----C
Confidence            44455678999999999999999999876678999999999999999999988776 56999999986641  1     2


Q ss_pred             CCCeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEecc
Q 026461          145 EGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       145 ~~~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      .++||+|++...   ...+...++.+.+.|+|||.+++.+.
T Consensus       112 ~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  152 (231)
T TIGR02752       112 DNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET  152 (231)
T ss_pred             CCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence            479999998743   34567788999999999999987543

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK00811 spermidine synthase; Provisional

Probab=99.59  E-value=7.5e-14  Score=117.28  Aligned_cols=106  Identities=21%  Similarity=0.274  Sum_probs=87.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC--C--CCcEEEEecchhHHHHHHHhccc
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V--DHKINFIESEALSVLDQLLKYSE  143 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~--~~~v~~~~~d~~~~l~~~~~~~~  143 (238)
                      ..++++||+||||.|..+.++++..+ ..+|+++|+++.+++.+++++...+  .  .++++++.+|+.++++..     
T Consensus        74 ~~~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~-----  147 (283)
T PRK00811         74 HPNPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET-----  147 (283)
T ss_pred             CCCCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC-----
Confidence            35788999999999999999997633 5799999999999999999987542  2  468999999999987653     


Q ss_pred             CCCCeeEEEEcCCccc-------hHHHHHHHHhccCCCeEEEEe
Q 026461          144 NEGSFDYAFVDADKDN-------YCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~~-------~~~~~~~~~~~L~~gG~lv~~  180 (238)
                       .++||+|++|...+.       ..++++.+.+.|+|||++++.
T Consensus       148 -~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        148 -ENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             -CCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence             579999999863221       257789999999999999975

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.59  E-value=1.9e-14  Score=118.74  Aligned_cols=112  Identities=18%  Similarity=0.222  Sum_probs=98.0

Q ss_pred             HHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcc
Q 026461           63 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS  142 (238)
Q Consensus        63 ~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~  142 (238)
                      ...+.+.++.+|||||||-|..++++|+..  +.+|+|+++|++..+.+++.++..|+..+++++..|-.++        
T Consensus        65 ~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~--------  134 (283)
T COG2230          65 LEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF--------  134 (283)
T ss_pred             HHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc--------
Confidence            334557788999999999999999999987  5899999999999999999999999998899999888776        


Q ss_pred             cCCCCeeEEEEcC-----CccchHHHHHHHHhccCCCeEEEEeccccCc
Q 026461          143 ENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLWGG  186 (238)
Q Consensus       143 ~~~~~fD~V~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (238)
                        .+.||-|+.-+     ..++++.+|+.+.++|+|||.++++.+....
T Consensus       135 --~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~  181 (283)
T COG2230         135 --EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD  181 (283)
T ss_pred             --ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence              46699998753     4677999999999999999999999877533

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.58  E-value=3e-14  Score=113.42  Aligned_cols=105  Identities=21%  Similarity=0.327  Sum_probs=87.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      ...+|||||||+|..+..++...| ..+|+++|+++.+++.|++++...++. +++++++|+.+.++...    ..+.+|
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~----~~~~~d   89 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFF----PDGSLS   89 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhC----CCCcee
Confidence            556899999999999999999887 789999999999999999999988885 69999999988765442    135899


Q ss_pred             EEEEcCCccc-----------hHHHHHHHHhccCCCeEEEEe
Q 026461          150 YAFVDADKDN-----------YCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       150 ~V~~d~~~~~-----------~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      .|+++.+...           ...+++.+.+.|+|||.+++.
T Consensus        90 ~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~  131 (194)
T TIGR00091        90 KVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK  131 (194)
T ss_pred             EEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence            9998742111           257899999999999998874

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=99.58  E-value=2.1e-15  Score=108.31  Aligned_cols=102  Identities=31%  Similarity=0.571  Sum_probs=51.8

Q ss_pred             EEEcccccHHHHHHHhhCCCCC--EEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEE
Q 026461           75 IEIGVFTGYSLLLTALTIPEDG--QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  152 (238)
Q Consensus        75 LeiG~G~G~~t~~la~~~~~~~--~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~  152 (238)
                      ||||++.|.++.++++.+++..  +++++|..+. .+.+++.+++.++.++++++.++..+.++.+.     .++||+|+
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-----~~~~dli~   74 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-----DGPIDLIF   74 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH-----H--EEEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC-----CCCEEEEE
Confidence            7999999999999999987554  7999999986 44566666667777889999999999988873     37999999


Q ss_pred             EcCCc--cchHHHHHHHHhccCCCeEEEEecc
Q 026461          153 VDADK--DNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       153 ~d~~~--~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      +|+.+  +.....++.+++.|+|||+|++||+
T Consensus        75 iDg~H~~~~~~~dl~~~~~~l~~ggviv~dD~  106 (106)
T PF13578_consen   75 IDGDHSYEAVLRDLENALPRLAPGGVIVFDDY  106 (106)
T ss_dssp             EES---HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence            99864  5567788999999999999999984

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.58  E-value=4.1e-14  Score=114.15  Aligned_cols=114  Identities=21%  Similarity=0.260  Sum_probs=92.0

Q ss_pred             cCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           53 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      .+.+.....+..++...+..+|||+|||+|+.+..++...   ++|+++|+++++++.+++++.+.++.+ +++..+|+.
T Consensus        61 ~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~  136 (212)
T PRK00312         61 ISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGW  136 (212)
T ss_pred             eCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcc
Confidence            4566666666666667778899999999999999888764   489999999999999999999988754 999999976


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      +.++.       .++||+|+++.....+   .+.+.+.|+|||.+++.
T Consensus       137 ~~~~~-------~~~fD~I~~~~~~~~~---~~~l~~~L~~gG~lv~~  174 (212)
T PRK00312        137 KGWPA-------YAPFDRILVTAAAPEI---PRALLEQLKEGGILVAP  174 (212)
T ss_pred             cCCCc-------CCCcCEEEEccCchhh---hHHHHHhcCCCcEEEEE
Confidence            54332       3789999998765444   45677899999999985

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.58  E-value=2.5e-14  Score=116.12  Aligned_cols=118  Identities=20%  Similarity=0.290  Sum_probs=101.0

Q ss_pred             HhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHH
Q 026461           56 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL  135 (238)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l  135 (238)
                      ...+-+|..++.....++|||+|||+|..++.+++..+ ..+|++||+++++++.|+++++.+++.++++++++|..++.
T Consensus        30 ~~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~  108 (248)
T COG4123          30 GTDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFL  108 (248)
T ss_pred             ccHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhh
Confidence            34677888888888899999999999999999999876 59999999999999999999999999999999999999887


Q ss_pred             HHHHhcccCCCCeeEEEEcCCc---------------------cchHHHHHHHHhccCCCeEEEE
Q 026461          136 DQLLKYSENEGSFDYAFVDADK---------------------DNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       136 ~~~~~~~~~~~~fD~V~~d~~~---------------------~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      +...     ..+||+|+++.+-                     ....++++.+..+||+||.+.+
T Consensus       109 ~~~~-----~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~  168 (248)
T COG4123         109 KALV-----FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF  168 (248)
T ss_pred             hccc-----ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence            7652     3579999997431                     1135677888899999998887

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.57  E-value=2.9e-14  Score=104.00  Aligned_cols=101  Identities=24%  Similarity=0.449  Sum_probs=85.0

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEE
Q 026461           72 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  151 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V  151 (238)
                      .+|||+|||+|..++.+++..  ..+++++|+++..++.++.++...++.++++++++|..+..+.+     ..++||+|
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~-----~~~~~D~I   74 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL-----PDGKFDLI   74 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC-----TTT-EEEE
T ss_pred             CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc-----cCceeEEE
Confidence            589999999999999999876  57999999999999999999999998888999999998876433     26899999


Q ss_pred             EEcCCcc-----------chHHHHHHHHhccCCCeEEEE
Q 026461          152 FVDADKD-----------NYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       152 ~~d~~~~-----------~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      +.+.+..           .+..+++.+.++|+|||++++
T Consensus        75 v~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~  113 (117)
T PF13659_consen   75 VTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF  113 (117)
T ss_dssp             EE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence            9986422           246788999999999999876

...

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.57  E-value=5.3e-14  Score=115.02  Aligned_cols=122  Identities=18%  Similarity=0.235  Sum_probs=94.6

Q ss_pred             CCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec
Q 026461           50 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES  129 (238)
Q Consensus        50 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~  129 (238)
                      ....+.+....++-..+...++.+|||.|+|+|..|.+|+..+.+.|+|+++|+.++.++.|+++++..|+.+++++.+.
T Consensus        20 rtQIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~   99 (247)
T PF08704_consen   20 RTQIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHR   99 (247)
T ss_dssp             SS----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES
T ss_pred             CcceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEec
Confidence            33456777777888888899999999999999999999999988799999999999999999999999999989999999


Q ss_pred             chhH-HHH-HHHhcccCCCCeeEEEEcCCccchHHHHHHHHhcc-CCCeEEEE
Q 026461          130 EALS-VLD-QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL-KVGGIAVY  179 (238)
Q Consensus       130 d~~~-~l~-~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L-~~gG~lv~  179 (238)
                      |+.+ .++ .+      ...+|.||+|-+  .....+..+.+.| ++||.+++
T Consensus       100 Dv~~~g~~~~~------~~~~DavfLDlp--~Pw~~i~~~~~~L~~~gG~i~~  144 (247)
T PF08704_consen  100 DVCEEGFDEEL------ESDFDAVFLDLP--DPWEAIPHAKRALKKPGGRICC  144 (247)
T ss_dssp             -GGCG--STT-------TTSEEEEEEESS--SGGGGHHHHHHHE-EEEEEEEE
T ss_pred             ceecccccccc------cCcccEEEEeCC--CHHHHHHHHHHHHhcCCceEEE
Confidence            9864 221 11      478999999965  3356677788899 89999886

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PLN02244 tocopherol O-methyltransferase

Probab=99.57  E-value=5.1e-14  Score=121.29  Aligned_cols=106  Identities=16%  Similarity=0.234  Sum_probs=89.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .++.+|||||||+|..+..+++.+  +.+|+++|+++.+++.++++....++.++++++++|+.+. +      +..++|
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~------~~~~~F  187 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-P------FEDGQF  187 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-C------CCCCCc
Confidence            456799999999999999999875  4799999999999999999999888878899999998764 1      125799


Q ss_pred             eEEEEcCC---ccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          149 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       149 D~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      |+|++...   ..+...+++++.+.|+|||.+++.+..
T Consensus       188 D~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~  225 (340)
T PLN02244        188 DLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWC  225 (340)
T ss_pred             cEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence            99998643   345577899999999999999987654

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.56  E-value=9.2e-14  Score=112.91  Aligned_cols=103  Identities=19%  Similarity=0.294  Sum_probs=88.0

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEE
Q 026461           72 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  151 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V  151 (238)
                      ++|||||||+|..+..+++.++ ..+|+++|+++++++.+++++...++.++++++.+|..+. + .      .++||+|
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~-~------~~~fD~I   71 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-P-F------PDTYDLV   71 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-C-C------CCCCCEe
Confidence            4799999999999999999876 6899999999999999999999999888999999987544 1 1      3689999


Q ss_pred             EEcC---CccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          152 FVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       152 ~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ++..   ...+...+++.+.++|+|||.+++.+..
T Consensus        72 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  106 (224)
T smart00828       72 FGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI  106 (224)
T ss_pred             ehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence            9753   2345678999999999999999998764

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=99.56  E-value=4.2e-13  Score=105.62  Aligned_cols=156  Identities=20%  Similarity=0.280  Sum_probs=121.4

Q ss_pred             cHhHHHHHHHHHhhcCCCEEEEEcccccH--HHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461           55 APDAGQLMAMLLRLVNAKKTIEIGVFTGY--SLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA  131 (238)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~--~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (238)
                      +|..+++++.|+...+.+.|+|++|+.|.  .|+.|+.+. ..+++++||-.+++.....++.+...++.+.++|+.++.
T Consensus        26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~  105 (218)
T PF07279_consen   26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA  105 (218)
T ss_pred             CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence            57899999999999999999999877554  355555433 237999999999999888999998888887789999985


Q ss_pred             -hHHHHHHHhcccCCCCeeEEEEcCCccchH-HHHHHHHhccCCCeEEEEeccccCccccCCCCCCCCCcccchHHHHHH
Q 026461          132 -LSVLDQLLKYSENEGSFDYAFVDADKDNYC-NYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILD  209 (238)
Q Consensus       132 -~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~-~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  209 (238)
                       .+.++.+       ...|++++|+...++. .+|+.+ ++-+.|.++|..|++..+.      .            -..
T Consensus       106 ~e~~~~~~-------~~iDF~vVDc~~~d~~~~vl~~~-~~~~~GaVVV~~Na~~r~~------~------------~~~  159 (218)
T PF07279_consen  106 PEEVMPGL-------KGIDFVVVDCKREDFAARVLRAA-KLSPRGAVVVCYNAFSRST------N------------GFS  159 (218)
T ss_pred             HHHHHhhc-------cCCCEEEEeCCchhHHHHHHHHh-ccCCCceEEEEeccccCCc------C------------Ccc
Confidence             4577776       7999999999887777 776664 4445677788888764321      0            113


Q ss_pred             HHHHhhcCCCeeEEeeecCCeeEEEEE
Q 026461          210 LNRSLADDPRVQLSHVALGDGITICRR  236 (238)
Q Consensus       210 ~~~~l~~~~~~~~~~lp~~~G~~i~~~  236 (238)
                      |...++..+.+.+++||+|.|+.|.+-
T Consensus       160 w~~~~~~~r~Vrsv~LPIG~GleVt~i  186 (218)
T PF07279_consen  160 WRSVLRGRRVVRSVFLPIGKGLEVTRI  186 (218)
T ss_pred             HHHhcCCCCceeEEEeccCCCeEEEEE
Confidence            455567778899999999999999874

The function of this family is unknown.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.55  E-value=2.3e-13  Score=118.94  Aligned_cols=110  Identities=20%  Similarity=0.317  Sum_probs=89.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCC-CcEEEEecchhHHHHHHHhcccCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ..++++|||+|||+|..++..+..  ...+|+++|+++.+++.|++|+..+++. ++++++++|+.+.++.+...   .+
T Consensus       218 ~~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~---~~  292 (396)
T PRK15128        218 YVENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR---GE  292 (396)
T ss_pred             hcCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhc---CC
Confidence            346789999999999998876642  2569999999999999999999999986 47999999999988766322   46


Q ss_pred             CeeEEEEcCCc------------cchHHHHHHHHhccCCCeEEEEecc
Q 026461          147 SFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       147 ~fD~V~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      +||+|++|.+.            ..+..++..+.++|+|||+++...+
T Consensus       293 ~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc  340 (396)
T PRK15128        293 KFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC  340 (396)
T ss_pred             CCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            89999999652            2355666677899999999987543

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.55  E-value=6.8e-14  Score=115.44  Aligned_cols=106  Identities=15%  Similarity=0.172  Sum_probs=86.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      .+..+|||+|||+|..+..+++.+ .+..+|+++|+++.+++.|++++...+...+++++++|+.+..         .+.
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~---------~~~  125 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA---------IEN  125 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC---------CCC
Confidence            356799999999999999998854 2478999999999999999999998887778999999986641         246


Q ss_pred             eeEEEEcCCc-----cchHHHHHHHHhccCCCeEEEEeccc
Q 026461          148 FDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       148 fD~V~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      +|+|++....     .....+++.+.+.|+|||.+++.+..
T Consensus       126 ~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~  166 (247)
T PRK15451        126 ASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF  166 (247)
T ss_pred             CCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            8998875321     22357899999999999999997754

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.54  E-value=1.4e-14  Score=113.54  Aligned_cols=101  Identities=23%  Similarity=0.254  Sum_probs=87.7

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           65 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      .+...++.+|+|+|||+|.+|..|++.+| .+.|+|+|-|++|++.|++.+      .+++|..+|+.++-+        
T Consensus        25 ~Vp~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p--------   89 (257)
T COG4106          25 RVPLERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKP--------   89 (257)
T ss_pred             hCCccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCC--------
Confidence            34566788999999999999999999998 999999999999999998764      468999999988744        


Q ss_pred             CCCeeEEEEcC---CccchHHHHHHHHhccCCCeEEEEe
Q 026461          145 EGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       145 ~~~fD~V~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ..+.|++|.++   +..+....|..++..|.|||+|.+.
T Consensus        90 ~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQ  128 (257)
T COG4106          90 EQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQ  128 (257)
T ss_pred             CCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEE
Confidence            57999999986   4556678888899999999999985

>TIGR00740 methyltransferase, putative

Probab=99.54  E-value=2.6e-13  Score=111.46  Aligned_cols=106  Identities=12%  Similarity=0.127  Sum_probs=86.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      +..+|||||||+|..+..+++.++ ++.+|+++|+++.+++.|++++...+...+++++++|+.+..         ...+
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~  123 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE---------IKNA  123 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---------CCCC
Confidence            567899999999999999998753 378999999999999999999988776667999999987651         2468


Q ss_pred             eEEEEcCCc-----cchHHHHHHHHhccCCCeEEEEecccc
Q 026461          149 DYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       149 D~V~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      |+|++....     .....+++.+.+.|+|||.+++.+...
T Consensus       124 d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~  164 (239)
T TIGR00740       124 SMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR  164 (239)
T ss_pred             CEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence            988775432     234678899999999999999987653

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PLN02366 spermidine synthase

Probab=99.54  E-value=4e-13  Score=113.66  Aligned_cols=107  Identities=20%  Similarity=0.305  Sum_probs=88.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC--C-CCcEEEEecchhHHHHHHHhcccC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      ..++++||+||||.|..+.+++++ ++..+|+.+|+++..++.+++++...+  + ++|++++.+|+.+.+....     
T Consensus        89 ~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~-----  162 (308)
T PLN02366         89 IPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP-----  162 (308)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc-----
Confidence            457899999999999999999986 435799999999999999999987542  2 3589999999999877541     


Q ss_pred             CCCeeEEEEcCCccc-------hHHHHHHHHhccCCCeEEEEe
Q 026461          145 EGSFDYAFVDADKDN-------YCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~-------~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      .++||+|++|...+.       ..++++.+.+.|+|||+++..
T Consensus       163 ~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q  205 (308)
T PLN02366        163 EGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ  205 (308)
T ss_pred             CCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence            368999999964321       357899999999999999875

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.54  E-value=4.6e-14  Score=112.89  Aligned_cols=117  Identities=19%  Similarity=0.234  Sum_probs=93.3

Q ss_pred             cHhHHHHHHHHHhh---cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461           55 APDAGQLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA  131 (238)
Q Consensus        55 ~~~~~~~l~~l~~~---~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (238)
                      .+....++...+..   ....+|||||||.|..+..||+.   +.+|+++|++++.++.|+.+....++.  +++.+..+
T Consensus        41 N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~  115 (243)
T COG2227          41 NPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATV  115 (243)
T ss_pred             ccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhH
Confidence            33344444444442   47789999999999999999985   589999999999999999999888863  77888777


Q ss_pred             hHHHHHHHhcccCCCCeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          132 LSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       132 ~~~l~~~~~~~~~~~~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ++....       .++||+|.+-..   .++...++..+.+++||||+++++.+-
T Consensus       116 edl~~~-------~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STin  163 (243)
T COG2227         116 EDLASA-------GGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTIN  163 (243)
T ss_pred             HHHHhc-------CCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccc
Confidence            776442       489999998643   445677999999999999999998765

>PRK01581 speE spermidine synthase; Validated

Probab=99.53  E-value=3.5e-13  Score=114.96  Aligned_cols=107  Identities=15%  Similarity=0.218  Sum_probs=86.0

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHH--H---HcCC-CCcEEEEecchhHHHHHHHh
Q 026461           67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII--K---KAGV-DHKINFIESEALSVLDQLLK  140 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~--~---~~~~-~~~v~~~~~d~~~~l~~~~~  140 (238)
                      ...+|++||+||||.|+.+..+++.. +..+|++||+++++++.|+++.  .   +..+ .++++++.+|+.++++..  
T Consensus       147 ~h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~--  223 (374)
T PRK01581        147 KVIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP--  223 (374)
T ss_pred             hCCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc--
Confidence            35678999999999999988888753 3689999999999999999732  1   1122 468999999999988764  


Q ss_pred             cccCCCCeeEEEEcCCcc-------c-hHHHHHHHHhccCCCeEEEEe
Q 026461          141 YSENEGSFDYAFVDADKD-------N-YCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       141 ~~~~~~~fD~V~~d~~~~-------~-~~~~~~~~~~~L~~gG~lv~~  180 (238)
                          .+.||+|++|....       . ..++++.+.+.|+|||++++.
T Consensus       224 ----~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q  267 (374)
T PRK01581        224 ----SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ  267 (374)
T ss_pred             ----CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence                57899999996322       1 257899999999999999886

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.53  E-value=9.6e-14  Score=110.73  Aligned_cols=100  Identities=18%  Similarity=0.224  Sum_probs=81.2

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++.+|||+|||+|..+.+|++.   +.+|+++|+|+.+++.++++....++. ++++..+|..+.  .+      .++
T Consensus        28 ~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~--~~------~~~   95 (197)
T PRK11207         28 VVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNL--TF------DGE   95 (197)
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhC--Cc------CCC
Confidence            446789999999999999999984   469999999999999999999888874 488888887654  11      367


Q ss_pred             eeEEEEcCCc-----cchHHHHHHHHhccCCCeEEEE
Q 026461          148 FDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       148 fD~V~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ||+|++....     .....+++.+.++|+|||.+++
T Consensus        96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~  132 (197)
T PRK11207         96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI  132 (197)
T ss_pred             cCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            9999976432     2456889999999999998554

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.53  E-value=1.1e-13  Score=117.78  Aligned_cols=103  Identities=19%  Similarity=0.179  Sum_probs=85.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      ++.+|||||||+|..+..++..   +.+|++||+++++++.|+++....+...+++++++++.++...       .++||
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~-------~~~FD  200 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADE-------GRKFD  200 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhc-------cCCCC
Confidence            4568999999999999999863   5799999999999999998876655556799999998665221       47999


Q ss_pred             EEEEcCC---ccchHHHHHHHHhccCCCeEEEEecc
Q 026461          150 YAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       150 ~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      +|++...   ..+...+++.+.++|+|||.+++...
T Consensus       201 ~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~  236 (322)
T PLN02396        201 AVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTI  236 (322)
T ss_pred             EEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence            9998643   34567899999999999999999864

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.53  E-value=2.2e-13  Score=114.67  Aligned_cols=119  Identities=19%  Similarity=0.304  Sum_probs=91.4

Q ss_pred             HhHHHHHHHHHhh---cCC-CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461           56 PDAGQLMAMLLRL---VNA-KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA  131 (238)
Q Consensus        56 ~~~~~~l~~l~~~---~~~-~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (238)
                      ++...++......   ..+ .+|||+|||+|..++.++...+ ..+|+++|+++.+++.|++|+...++.++++++++|.
T Consensus        96 ~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~  174 (284)
T TIGR00536        96 PETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNL  174 (284)
T ss_pred             CccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch
Confidence            4455555544321   223 6899999999999999999876 6899999999999999999999998877799999998


Q ss_pred             hHHHHHHHhcccCCCCeeEEEEcCCc----------------------------cchHHHHHHHHhccCCCeEEEEeccc
Q 026461          132 LSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       132 ~~~l~~~~~~~~~~~~fD~V~~d~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      .+.++        ..+||+|+++.+.                            ..+..++..+.+.|+|||++++.-..
T Consensus       175 ~~~~~--------~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~  246 (284)
T TIGR00536       175 FEPLA--------GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN  246 (284)
T ss_pred             hccCc--------CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence            66422        2489999987321                            02345677777899999999986433

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.52  E-value=6e-13  Score=105.90  Aligned_cols=121  Identities=14%  Similarity=0.105  Sum_probs=90.5

Q ss_pred             ccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461           52 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA  131 (238)
Q Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (238)
                      +..+.....++..+....+..+|||+|||+|..++.++...  ..+|+++|.++.+++.+++|++..++. +++++.+|+
T Consensus        35 p~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~  111 (199)
T PRK10909         35 PTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNA  111 (199)
T ss_pred             cCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchH
Confidence            33444445556666554567799999999999998655432  369999999999999999999999874 699999999


Q ss_pred             hHHHHHHHhcccCCCCeeEEEEcCC-ccc-hHHHHHHHHh--ccCCCeEEEEec
Q 026461          132 LSVLDQLLKYSENEGSFDYAFVDAD-KDN-YCNYHERLMK--LLKVGGIAVYDN  181 (238)
Q Consensus       132 ~~~l~~~~~~~~~~~~fD~V~~d~~-~~~-~~~~~~~~~~--~L~~gG~lv~~~  181 (238)
                      .+.++..      ..+||+||+|.+ ... ....++.+..  +|+++++++++.
T Consensus       112 ~~~l~~~------~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~  159 (199)
T PRK10909        112 LSFLAQP------GTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVES  159 (199)
T ss_pred             HHHHhhc------CCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence            8876532      357999999987 333 3445555543  478999999874

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.52  E-value=2.1e-13  Score=114.12  Aligned_cols=113  Identities=18%  Similarity=0.301  Sum_probs=91.8

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           66 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ....++.+|||||||+|..++.++....+.++|+++|+++.+++.|+++....++. ++++..+|+.+. + +     ..
T Consensus        73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l-~-~-----~~  144 (272)
T PRK11873         73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEAL-P-V-----AD  144 (272)
T ss_pred             ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhC-C-C-----CC
Confidence            34557789999999999999888887665679999999999999999999888874 699999987553 1 1     24


Q ss_pred             CCeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEeccccCc
Q 026461          146 GSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  186 (238)
Q Consensus       146 ~~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (238)
                      ++||+|+.+..   ..+....++++.+.|+|||.+++.++...+
T Consensus       145 ~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~  188 (272)
T PRK11873        145 NSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRG  188 (272)
T ss_pred             CceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccC
Confidence            68999998753   334567899999999999999998776433

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.52  E-value=1.8e-13  Score=109.02  Aligned_cols=102  Identities=16%  Similarity=0.202  Sum_probs=79.9

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           66 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      +...++.+|||+|||+|..+.++++.   +.+|+++|+++.+++.+++.....++.  +++..+|....  .+      .
T Consensus        26 ~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~--~~------~   92 (195)
T TIGR00477        26 VKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAA--AL------N   92 (195)
T ss_pred             hccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhc--cc------c
Confidence            34456789999999999999999974   569999999999999999988877763  77777776432  12      3


Q ss_pred             CCeeEEEEcCC-----ccchHHHHHHHHhccCCCeEEEEe
Q 026461          146 GSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       146 ~~fD~V~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ++||+|++...     ......+++.+.++|+|||++++-
T Consensus        93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477        93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            68999987532     234567899999999999985553

Part of a tellurite-reducing operon tehA and tehB

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.52  E-value=1.2e-13  Score=114.73  Aligned_cols=99  Identities=23%  Similarity=0.317  Sum_probs=82.3

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ...++.+|||||||+|..+..+++.++ ..+|+++|+++.+++.+++++      .+++++.+|+.+..+        ..
T Consensus        28 ~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~--------~~   92 (258)
T PRK01683         28 PLENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP--------PQ   92 (258)
T ss_pred             CCcCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC--------CC
Confidence            345678999999999999999999876 789999999999999998764      358899999865422        46


Q ss_pred             CeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEe
Q 026461          147 SFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       147 ~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      +||+|++...   ..+...+++.+.+.|+|||.+++.
T Consensus        93 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~  129 (258)
T PRK01683         93 ALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ  129 (258)
T ss_pred             CccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence            9999998753   345678899999999999999885

>TIGR00417 speE spermidine synthase

Probab=99.51  E-value=9.6e-13  Score=109.96  Aligned_cols=106  Identities=22%  Similarity=0.255  Sum_probs=87.0

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCC---CCcEEEEecchhHHHHHHHhcccC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV---DHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      ..++++||+||||+|..+..++...+ ..+++++|++++.++.+++++...+.   ..+++++.+|+.+.+...      
T Consensus        70 ~~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~------  142 (270)
T TIGR00417        70 HPNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT------  142 (270)
T ss_pred             CCCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC------
Confidence            45678999999999999998887653 57899999999999999998865431   257899999999887764      


Q ss_pred             CCCeeEEEEcCCcc-----c--hHHHHHHHHhccCCCeEEEEe
Q 026461          145 EGSFDYAFVDADKD-----N--YCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       145 ~~~fD~V~~d~~~~-----~--~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      .++||+|++|....     .  ..++++.+.+.|+|||++++.
T Consensus       143 ~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       143 ENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             CCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            57999999986421     1  367889999999999999986

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.51  E-value=9e-14  Score=98.94  Aligned_cols=93  Identities=20%  Similarity=0.388  Sum_probs=73.6

Q ss_pred             EEEEcccccHHHHHHHhhCCC--CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEE
Q 026461           74 TIEIGVFTGYSLLLTALTIPE--DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  151 (238)
Q Consensus        74 vLeiG~G~G~~t~~la~~~~~--~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V  151 (238)
                      |||+|||+|..+..++..++.  ..+++++|+++++++.++++....+.  +++++++|+.++ +..      .++||+|
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l-~~~------~~~~D~v   71 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDL-PFS------DGKFDLV   71 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCH-HHH------SSSEEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHC-ccc------CCCeeEE
Confidence            799999999999999998732  37999999999999999999988665  689999999885 332      5799999


Q ss_pred             EEc-C-----CccchHHHHHHHHhccCCCe
Q 026461          152 FVD-A-----DKDNYCNYHERLMKLLKVGG  175 (238)
Q Consensus       152 ~~d-~-----~~~~~~~~~~~~~~~L~~gG  175 (238)
                      ++. .     +......+++.+.++|+|||
T Consensus        72 ~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   72 VCSGLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             EE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             EEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            993 3     22345678899999999998

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.51  E-value=3.2e-13  Score=105.32  Aligned_cols=165  Identities=19%  Similarity=0.282  Sum_probs=104.5

Q ss_pred             hcCCCCCccCcHhHHHHHHHH---HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCC
Q 026461           45 ADHPWAMMGTAPDAGQLMAML---LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD  121 (238)
Q Consensus        45 ~~~~~~~~~~~~~~~~~l~~l---~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~  121 (238)
                      ...+|..-...-+..+.-..+   +....-.++||+|||.|..|..|+..+   .+++++|+++.+++.|++.+...   
T Consensus        15 ~~DPW~~~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~---   88 (201)
T PF05401_consen   15 NDDPWGFETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGL---   88 (201)
T ss_dssp             SSSGGGTTT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT----
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCC---
Confidence            345666544444443332322   233344689999999999999999875   59999999999999999988643   


Q ss_pred             CcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCC------ccchHHHHHHHHhccCCCeEEEEeccc-----cCccccC
Q 026461          122 HKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD------KDNYCNYHERLMKLLKVGGIAVYDNTL-----WGGTVAV  190 (238)
Q Consensus       122 ~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~------~~~~~~~~~~~~~~L~~gG~lv~~~~~-----~~g~~~~  190 (238)
                      ++|++.+++..+..|        .++||+|++...      ......++..+...|+|||.+|+-..-     ..|+.+ 
T Consensus        89 ~~V~~~~~dvp~~~P--------~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~-  159 (201)
T PF05401_consen   89 PHVEWIQADVPEFWP--------EGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAA-  159 (201)
T ss_dssp             SSEEEEES-TTT-----------SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--
T ss_pred             CCeEEEECcCCCCCC--------CCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCccc-
Confidence            469999999977755        589999998742      234556788888999999999995542     112211 


Q ss_pred             CCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEE
Q 026461          191 PEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICR  235 (238)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~  235 (238)
                                + .....+-|++.+.+-..+++.--..+..-.+++
T Consensus       160 ----------g-a~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (201)
T PF05401_consen  160 ----------G-AETVLEMLQEHLTEVERVECRGGSPNEDCLLAR  193 (201)
T ss_dssp             ------------HHHHHHHHHHHSEEEEEEEEE-SSTTSEEEEEE
T ss_pred             ----------c-hHHHHHHHHHHhhheeEEEEcCCCCCCceEeee
Confidence                      2 344466677777666666655444454444544

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.51  E-value=3.2e-13  Score=114.89  Aligned_cols=105  Identities=22%  Similarity=0.375  Sum_probs=85.1

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           65 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      .+...+..+|||||||+|+.+..+++..+..++|+++|+++++++.|++++...+. +++.++.+|+.+.++.       
T Consensus        75 ~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~-------  146 (322)
T PRK13943         75 WVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPE-------  146 (322)
T ss_pred             hcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccc-------
Confidence            34455678999999999999999999876457899999999999999999999887 4699999998765443       


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      .++||+|+++......+   ..+.+.|+|||.+++.
T Consensus       147 ~~~fD~Ii~~~g~~~ip---~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        147 FAPYDVIFVTVGVDEVP---ETWFTQLKEGGRVIVP  179 (322)
T ss_pred             cCCccEEEECCchHHhH---HHHHHhcCCCCEEEEE
Confidence            36899999986544333   4467889999998874

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.51  E-value=2.3e-13  Score=117.83  Aligned_cols=117  Identities=14%  Similarity=0.092  Sum_probs=89.4

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCC--CcEEEEecch
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEA  131 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~  131 (238)
                      ++....-++..+ ......+|||+|||+|..++.+++..| ..+|+++|+++.+++.++++++.++..  .+++++.+|+
T Consensus       213 LD~GtrllL~~l-p~~~~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~  290 (378)
T PRK15001        213 LDIGARFFMQHL-PENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA  290 (378)
T ss_pred             cChHHHHHHHhC-CcccCCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccc
Confidence            444444444443 333346999999999999999999877 789999999999999999999887643  3689998887


Q ss_pred             hHHHHHHHhcccCCCCeeEEEEcCCcc--------chHHHHHHHHhccCCCeEEEEe
Q 026461          132 LSVLDQLLKYSENEGSFDYAFVDADKD--------NYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       132 ~~~l~~~~~~~~~~~~fD~V~~d~~~~--------~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      .+.++        .++||+|+++.+.+        ....++..+.++|+|||.+++.
T Consensus       291 l~~~~--------~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV  339 (378)
T PRK15001        291 LSGVE--------PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV  339 (378)
T ss_pred             cccCC--------CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence            54321        35899999985421        1246788888999999988775

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.51  E-value=4.5e-13  Score=112.96  Aligned_cols=104  Identities=15%  Similarity=0.166  Sum_probs=85.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .++++|||+|||+|..++.++.. + ..+|+++|+++.+++.+++++..+++..++.+..++....         ..++|
T Consensus       158 ~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~---------~~~~f  226 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP---------IEGKA  226 (288)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc---------cCCCc
Confidence            35689999999999999888763 3 4699999999999999999999988877777777652211         14699


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      |+|+++........++..+.+.|+|||.+++..+.
T Consensus       227 DlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~  261 (288)
T TIGR00406       227 DVIVANILAEVIKELYPQFSRLVKPGGWLILSGIL  261 (288)
T ss_pred             eEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence            99999876666678888999999999999998755

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.51  E-value=8.3e-13  Score=103.72  Aligned_cols=109  Identities=19%  Similarity=0.184  Sum_probs=85.9

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHH
Q 026461           59 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL  138 (238)
Q Consensus        59 ~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~  138 (238)
                      ..+|...+...++++|||+|||+|..+..++...   .+|+++|+++.+++.+++++...+.  +++++.+|..+..   
T Consensus         8 ~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~---   79 (179)
T TIGR00537         8 SLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV---   79 (179)
T ss_pred             HHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc---
Confidence            3455555556677899999999999999999854   3899999999999999999987775  4888998876532   


Q ss_pred             HhcccCCCCeeEEEEcCCcc------------------------chHHHHHHHHhccCCCeEEEEec
Q 026461          139 LKYSENEGSFDYAFVDADKD------------------------NYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       139 ~~~~~~~~~fD~V~~d~~~~------------------------~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                            .++||+|+++.+..                        .+..+++.+.++|+|||.+++..
T Consensus        80 ------~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~  140 (179)
T TIGR00537        80 ------RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ  140 (179)
T ss_pred             ------CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence                  35899999874321                        03457888889999999988754

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.51  E-value=1.1e-13  Score=114.71  Aligned_cols=96  Identities=15%  Similarity=0.116  Sum_probs=80.0

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++.+|||||||+|..+..++..+| ..+|+++|+++.+++.|++.        +++++++|+.+..+        .++
T Consensus        27 ~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~--------~~~   89 (255)
T PRK14103         27 AERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKP--------KPD   89 (255)
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCC--------CCC
Confidence            45678999999999999999999876 78999999999999998752        47889999865421        479


Q ss_pred             eeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEe
Q 026461          148 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       148 fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ||+|++...   ..+....++.+.+.|+|||.+++.
T Consensus        90 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~  125 (255)
T PRK14103         90 TDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ  125 (255)
T ss_pred             ceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence            999999753   345577889999999999999885

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.50  E-value=1.2e-13  Score=96.35  Aligned_cols=92  Identities=24%  Similarity=0.309  Sum_probs=74.2

Q ss_pred             EEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEc
Q 026461           75 IEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD  154 (238)
Q Consensus        75 LeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d  154 (238)
                      ||+|||+|..+..+++. + ..+|+++|+++.+++.+++.....    ++.+.++|+.+. +      +++++||+|++.
T Consensus         1 LdiG~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l-~------~~~~sfD~v~~~   67 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-G-GASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDL-P------FPDNSFDVVFSN   67 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-T-TCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSS-S------S-TT-EEEEEEE
T ss_pred             CEecCcCCHHHHHHHhc-c-CCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhC-c------cccccccccccc
Confidence            89999999999999997 3 789999999999999999986543    466999998776 2      236899999987


Q ss_pred             CC---ccchHHHHHHHHhccCCCeEEEE
Q 026461          155 AD---KDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       155 ~~---~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ..   ......+++++.+.|||||++++
T Consensus        68 ~~~~~~~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   68 SVLHHLEDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             SHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence            53   35667899999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=99.50  E-value=7.7e-13  Score=117.65  Aligned_cols=125  Identities=18%  Similarity=0.196  Sum_probs=100.4

Q ss_pred             cCcHhHHHHHHHHH--hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecc
Q 026461           53 GTAPDAGQLMAMLL--RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE  130 (238)
Q Consensus        53 ~~~~~~~~~l~~l~--~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d  130 (238)
                      -++...+.+...++  ...++.+|||+++|.|+-|.++++.+...+.|++.|+++..++..++++.+.|+. ++.+...|
T Consensus        94 yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D  172 (470)
T PRK11933         94 YIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFD  172 (470)
T ss_pred             EEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCc
Confidence            34455555555555  4567789999999999999999999987799999999999999999999999985 48888899


Q ss_pred             hhHHHHHHHhcccCCCCeeEEEEcCCccch-------------------------HHHHHHHHhccCCCeEEEEecccc
Q 026461          131 ALSVLDQLLKYSENEGSFDYAFVDADKDNY-------------------------CNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       131 ~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~-------------------------~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      +....+.+      .+.||.|++|++++..                         ..++..++++|+|||+||-+.+.+
T Consensus       173 ~~~~~~~~------~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~  245 (470)
T PRK11933        173 GRVFGAAL------PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL  245 (470)
T ss_pred             hhhhhhhc------hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence            87654443      4689999999765421                         456777789999999999777654

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.50  E-value=5.7e-13  Score=115.33  Aligned_cols=115  Identities=21%  Similarity=0.326  Sum_probs=96.7

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCC-CcEEEEecchhHHHHHHHhccc
Q 026461           65 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSE  143 (238)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~  143 (238)
                      +.....+++||++-|+||..+++.|.+-  ..+||+||+|..+++.|++|++.+|+. .++.|+++|+.+++......  
T Consensus       212 l~~~~~GkrvLNlFsYTGgfSv~Aa~gG--A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~--  287 (393)
T COG1092         212 LGELAAGKRVLNLFSYTGGFSVHAALGG--ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERR--  287 (393)
T ss_pred             HhhhccCCeEEEecccCcHHHHHHHhcC--CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhc--
Confidence            3444468899999999999999999752  349999999999999999999999986 56899999999999988654  


Q ss_pred             CCCCeeEEEEcCC------------ccchHHHHHHHHhccCCCeEEEEecccc
Q 026461          144 NEGSFDYAFVDAD------------KDNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       144 ~~~~fD~V~~d~~------------~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                       ..+||+|++|.+            ..++......+.++|+|||++++.++..
T Consensus       288 -g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~  339 (393)
T COG1092         288 -GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR  339 (393)
T ss_pred             -CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence             569999999964            1335667777889999999999987764

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.49  E-value=2.8e-13  Score=112.81  Aligned_cols=125  Identities=18%  Similarity=0.232  Sum_probs=92.3

Q ss_pred             CCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEE
Q 026461           47 HPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF  126 (238)
Q Consensus        47 ~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~  126 (238)
                      .+-+.......+.+.|..+..  ++++|||+|||+|..++..+.. . ..+|+++|++|.+++.+++|++.++....++.
T Consensus       141 FGTG~HpTT~lcL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kL-G-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~  216 (300)
T COG2264         141 FGTGTHPTTSLCLEALEKLLK--KGKTVLDVGCGSGILAIAAAKL-G-AKKVVGVDIDPQAVEAARENARLNGVELLVQA  216 (300)
T ss_pred             cCCCCChhHHHHHHHHHHhhc--CCCEEEEecCChhHHHHHHHHc-C-CceEEEecCCHHHHHHHHHHHHHcCCchhhhc
Confidence            334444444455555555544  7889999999999999988874 3 57899999999999999999999988653333


Q ss_pred             EecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          127 IESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       127 ~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ...+..+...        .++||+|+.+.-..-...+...+.++|+|||.++++.++
T Consensus       217 ~~~~~~~~~~--------~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl  265 (300)
T COG2264         217 KGFLLLEVPE--------NGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGIL  265 (300)
T ss_pred             ccccchhhcc--------cCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeeh
Confidence            3333323211        469999998864444567777888999999999998876

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.49  E-value=3.5e-12  Score=105.45  Aligned_cols=109  Identities=17%  Similarity=0.242  Sum_probs=84.1

Q ss_pred             HHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHH
Q 026461           58 AGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD  136 (238)
Q Consensus        58 ~~~~l~~l~~-~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~  136 (238)
                      ...++..+.. ..++++|||+|||+|..++.++.. . ..+|+++|+++.+++.|++++..+++..++.+..+       
T Consensus       106 t~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~-------  176 (250)
T PRK00517        106 TRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG-------  176 (250)
T ss_pred             HHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC-------
Confidence            3444444443 346789999999999999887764 3 34799999999999999999998887544544332       


Q ss_pred             HHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          137 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       137 ~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                              ..+||+|+.+........++..+.+.|+|||.+++.+..
T Consensus       177 --------~~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~  215 (250)
T PRK00517        177 --------DLKADVIVANILANPLLELAPDLARLLKPGGRLILSGIL  215 (250)
T ss_pred             --------CCCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence                    137999998876666678888999999999999997654

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.48  E-value=4.7e-13  Score=125.23  Aligned_cols=110  Identities=19%  Similarity=0.312  Sum_probs=91.4

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCC-CcEEEEecchhHHHHHHHhcccC
Q 026461           66 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      ....++++|||+|||+|..+++++.. + ..+|+++|+|+.+++.|++|+..+++. ++++++++|+.++++.+      
T Consensus       534 ~~~~~g~rVLDlf~gtG~~sl~aa~~-G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~------  605 (702)
T PRK11783        534 GQMAKGKDFLNLFAYTGTASVHAALG-G-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA------  605 (702)
T ss_pred             HHhcCCCeEEEcCCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc------
Confidence            33456789999999999999999985 2 357999999999999999999999986 68999999999987654      


Q ss_pred             CCCeeEEEEcCCc--------------cchHHHHHHHHhccCCCeEEEEeccc
Q 026461          145 EGSFDYAFVDADK--------------DNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       145 ~~~fD~V~~d~~~--------------~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      .++||+|++|.+.              ..+..++..+.++|+|||++++....
T Consensus       606 ~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~  658 (702)
T PRK11783        606 REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK  658 (702)
T ss_pred             CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            4789999999642              12456777788999999999887543

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.48  E-value=8.9e-13  Score=113.91  Aligned_cols=104  Identities=24%  Similarity=0.289  Sum_probs=87.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .....+||||||+|..++.+|...| +..++|+|+++.+++.+.+.+...++. ++.++++|+...+..+     ..+++
T Consensus       121 ~~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~-----~~~s~  193 (390)
T PRK14121        121 NQEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELL-----PSNSV  193 (390)
T ss_pred             CCCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhC-----CCCce
Confidence            3456899999999999999999987 789999999999999999999998885 4999999998776544     25899


Q ss_pred             eEEEEcCCccc---------hHHHHHHHHhccCCCeEEEE
Q 026461          149 DYAFVDADKDN---------YCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       149 D~V~~d~~~~~---------~~~~~~~~~~~L~~gG~lv~  179 (238)
                      |.|++.-+.++         ...+++.+.+.|+|||.+.+
T Consensus       194 D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l  233 (390)
T PRK14121        194 EKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLEL  233 (390)
T ss_pred             eEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence            99998643211         25789999999999998887

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.47  E-value=9e-13  Score=110.57  Aligned_cols=114  Identities=20%  Similarity=0.279  Sum_probs=85.9

Q ss_pred             HHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHH
Q 026461           58 AGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD  136 (238)
Q Consensus        58 ~~~~l~~l~~~-~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~  136 (238)
                      +..+|..+... .++++|||+|||+|..++..+.. . ..+|+++|++|.+++.|++|+..+++.+++.+.  ...+.  
T Consensus       148 T~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl-G-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~--  221 (295)
T PF06325_consen  148 TRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL-G-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL--  221 (295)
T ss_dssp             HHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT-T-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT--
T ss_pred             HHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc--
Confidence            34444444443 45679999999999999988874 3 568999999999999999999999998877663  11111  


Q ss_pred             HHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecccc
Q 026461          137 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       137 ~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                             ..++||+|+.+....-...+...+.++|+|||.++++.++.
T Consensus       222 -------~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~  262 (295)
T PF06325_consen  222 -------VEGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILE  262 (295)
T ss_dssp             -------CCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred             -------ccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccH
Confidence                   14899999998766666777777889999999999988873

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK04266 fibrillarin; Provisional

Probab=99.47  E-value=7.7e-13  Score=107.41  Aligned_cols=115  Identities=16%  Similarity=0.171  Sum_probs=86.8

Q ss_pred             HhHHHHHHHH--HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           56 PDAGQLMAML--LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        56 ~~~~~~l~~l--~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      ...+.++..+  +...+..+|||+|||+|..+..++...+ .++|+++|+++++++.+.+++...   .++.++.+|+.+
T Consensus        56 ~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~  131 (226)
T PRK04266         56 KLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARK  131 (226)
T ss_pred             chHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCC
Confidence            3445555544  4556778999999999999999999887 789999999999999887776543   458999999864


Q ss_pred             HH--HHHHhcccCCCCeeEEEEcCCccc-hHHHHHHHHhccCCCeEEEEe
Q 026461          134 VL--DQLLKYSENEGSFDYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       134 ~l--~~~~~~~~~~~~fD~V~~d~~~~~-~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ..  ..+      .++||+|+.+....+ ....++.+.+.|||||.+++.
T Consensus       132 ~~~~~~l------~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~  175 (226)
T PRK04266        132 PERYAHV------VEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA  175 (226)
T ss_pred             cchhhhc------cccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence            21  111      357999998764322 234578889999999999985

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.47  E-value=8e-13  Score=112.96  Aligned_cols=110  Identities=15%  Similarity=0.161  Sum_probs=83.8

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ....+++|||||||+|+.+..++...+  .+|+|+|+++.++..++..-...+...++.++.+++.+...        .+
T Consensus       119 ~~l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~--------~~  188 (322)
T PRK15068        119 SPLKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA--------LK  188 (322)
T ss_pred             CCCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC--------cC
Confidence            334678999999999999999998643  47999999999887655443333334579999998866511        37


Q ss_pred             CeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEeccccCc
Q 026461          147 SFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  186 (238)
Q Consensus       147 ~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (238)
                      +||+|++.+.   ..+...+++.+.+.|+|||.++++.....+
T Consensus       189 ~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~  231 (322)
T PRK15068        189 AFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDG  231 (322)
T ss_pred             CcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecC
Confidence            8999998643   345678899999999999999998765443

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.46  E-value=1.9e-12  Score=106.83  Aligned_cols=117  Identities=24%  Similarity=0.389  Sum_probs=90.5

Q ss_pred             cHhHHHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           55 APDAGQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        55 ~~~~~~~l~~l~~~--~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      .+....++..+...  .++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++...++. +++++++|+.
T Consensus        70 ~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~  147 (251)
T TIGR03534        70 RPDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWF  147 (251)
T ss_pred             CCChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchh
Confidence            34445555554443  2456899999999999999999876 679999999999999999999988875 6999999987


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcCCccc-----------------------------hHHHHHHHHhccCCCeEEEEec
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDADKDN-----------------------------YCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~~~~~-----------------------------~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      +.++        .++||+|+++.+...                             +..+++.+.++|+|||.+++..
T Consensus       148 ~~~~--------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~  217 (251)
T TIGR03534       148 EPLP--------GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI  217 (251)
T ss_pred             ccCc--------CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            6432        478999998643110                             2356778889999999999853

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.45  E-value=1.1e-12  Score=111.60  Aligned_cols=111  Identities=13%  Similarity=0.060  Sum_probs=90.6

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhccc
Q 026461           64 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE  143 (238)
Q Consensus        64 ~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~  143 (238)
                      ......+..+|||||||+|..++.+++..| ..+++++|. +.+++.+++++...++.++++++.+|+.+.  .      
T Consensus       143 ~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~--~------  212 (306)
T TIGR02716       143 EEAKLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE--S------  212 (306)
T ss_pred             HHcCCCCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC--C------
Confidence            334455678999999999999999999987 789999998 789999999999999988999999998653  1      


Q ss_pred             CCCCeeEEEEcCCcc-----chHHHHHHHHhccCCCeEEEEeccccC
Q 026461          144 NEGSFDYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTLWG  185 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~~~  185 (238)
                       .+.+|+|++....+     .....++.+.+.|+|||.+++.+..+.
T Consensus       213 -~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~  258 (306)
T TIGR02716       213 -YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID  258 (306)
T ss_pred             -CCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence             13579988764322     235688999999999999999887653

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.45  E-value=8.6e-13  Score=119.04  Aligned_cols=101  Identities=19%  Similarity=0.315  Sum_probs=82.8

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeE
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  150 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~  150 (238)
                      +.+|||+|||+|..++.++..++ ..+|+++|+|+.+++.|++++...++.++++++++|..+.++        .++||+
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--------~~~fDl  209 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--------KQKFDF  209 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc--------CCCccE
Confidence            46899999999999999998876 789999999999999999999998888889999999765322        368999


Q ss_pred             EEEcCCc-----------------------------cchHHHHHHHHhccCCCeEEEEe
Q 026461          151 AFVDADK-----------------------------DNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       151 V~~d~~~-----------------------------~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      |+++.+.                             ..+..+++.+.++|+|||.+++.
T Consensus       210 IvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE  268 (506)
T PRK01544        210 IVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE  268 (506)
T ss_pred             EEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence            9986420                             01234556667899999999986

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.45  E-value=6.5e-12  Score=99.42  Aligned_cols=124  Identities=10%  Similarity=-0.024  Sum_probs=93.7

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      .+...+.++..+.......++||++||+|..++.++...  ..+|+++|.++.+++.+++|++..++.++++++.+|+.+
T Consensus        33 ~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srg--a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~  110 (189)
T TIGR00095        33 TRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRG--AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALR  110 (189)
T ss_pred             hHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHH
Confidence            333344455544444567899999999999999999864  358999999999999999999999987789999999988


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCc--cchHHHHHHHH--hccCCCeEEEEecc
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLM--KLLKVGGIAVYDNT  182 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~--~~~~~~~~~~~--~~L~~gG~lv~~~~  182 (238)
                      .+..+...   ...||+||+|.+.  ..+...++.+.  .+|+++|++++...
T Consensus       111 ~l~~~~~~---~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~  160 (189)
T TIGR00095       111 ALKFLAKK---PTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEED  160 (189)
T ss_pred             HHHHhhcc---CCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence            77654221   2358999999754  33455555554  47999999998643

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK14968 putative methyltransferase; Provisional

Probab=99.45  E-value=2.1e-12  Score=101.80  Aligned_cols=110  Identities=16%  Similarity=0.215  Sum_probs=85.5

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCc-EEEEecchhHHHHHH
Q 026461           60 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLDQL  138 (238)
Q Consensus        60 ~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~l~~~  138 (238)
                      .++.......+.++|||+|||+|..+..++..   ..+|+++|+++++++.+++++...+..++ +.++++|..+.+.  
T Consensus        13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--   87 (188)
T PRK14968         13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR--   87 (188)
T ss_pred             HHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc--
Confidence            33444444467789999999999999999986   57999999999999999999988887654 8889988765422  


Q ss_pred             HhcccCCCCeeEEEEcCCcc------------------------chHHHHHHHHhccCCCeEEEEe
Q 026461          139 LKYSENEGSFDYAFVDADKD------------------------NYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       139 ~~~~~~~~~fD~V~~d~~~~------------------------~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                            ..+||+|+.+.+..                        ....+++.+.+.|+|||.+++-
T Consensus        88 ------~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~  147 (188)
T PRK14968         88 ------GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL  147 (188)
T ss_pred             ------ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence                  34899999874311                        1345788888999999987763

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.45  E-value=2.2e-12  Score=107.96  Aligned_cols=132  Identities=19%  Similarity=0.210  Sum_probs=89.5

Q ss_pred             CCCCChHHHHHHHHHhcCCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCC--CEEEEEeCCchh
Q 026461           30 YPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPED--GQITAIDVNRET  107 (238)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~--~~v~~iD~~~~~  107 (238)
                      -+..+..+-+.+....+.+... .+.....+.+..... ....+|||+|||+|+.+..++..++..  ..++|+|+++.+
T Consensus        47 ~~~d~~~~~~ar~~fl~~g~y~-~l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~  124 (272)
T PRK11088         47 DPGDNKEMMQARRAFLDAGHYQ-PLRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVA  124 (272)
T ss_pred             CCCcCHHHHHHHHHHHHCCChH-HHHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHH
Confidence            3345556666665555443322 122233333333222 245689999999999999999877532  379999999999


Q ss_pred             HHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          108 YEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       108 ~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ++.|++..      .++.+.++|+.+. + +     ..++||+|+....    +..++++.+.|+|||.+++-
T Consensus       125 l~~A~~~~------~~~~~~~~d~~~l-p-~-----~~~sfD~I~~~~~----~~~~~e~~rvLkpgG~li~~  180 (272)
T PRK11088        125 IKYAAKRY------PQVTFCVASSHRL-P-F-----ADQSLDAIIRIYA----PCKAEELARVVKPGGIVITV  180 (272)
T ss_pred             HHHHHHhC------CCCeEEEeecccC-C-C-----cCCceeEEEEecC----CCCHHHHHhhccCCCEEEEE
Confidence            99998753      3588899887664 2 1     2579999997543    23457788999999999874

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.44  E-value=1.2e-12  Score=108.87  Aligned_cols=114  Identities=18%  Similarity=0.226  Sum_probs=87.5

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHH
Q 026461           58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ  137 (238)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~  137 (238)
                      ...++.. +...+..+|||||||+|..+..++...  ..+|+++|+++.+++.+++++..   .+++.+..+|+.+.  .
T Consensus        41 ~~~~l~~-l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~--~  112 (263)
T PTZ00098         41 TTKILSD-IELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKK--D  112 (263)
T ss_pred             HHHHHHh-CCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccC--C
Confidence            3334433 345677899999999999999998754  46999999999999999987643   35799999998643  1


Q ss_pred             HHhcccCCCCeeEEEEcCC-----ccchHHHHHHHHhccCCCeEEEEecccc
Q 026461          138 LLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       138 ~~~~~~~~~~fD~V~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                           ...++||+|++...     ..+...+++.+.++|+|||.+++.+...
T Consensus       113 -----~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~  159 (263)
T PTZ00098        113 -----FPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA  159 (263)
T ss_pred             -----CCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence                 12579999998421     1256788999999999999999987654

>PLN02823 spermine synthase

Probab=99.44  E-value=1.6e-12  Score=111.12  Aligned_cols=106  Identities=18%  Similarity=0.191  Sum_probs=87.0

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC--C-CCcEEEEecchhHHHHHHHhcccC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      ..++++||.||+|.|..+.++++..+ ..+|++||+++..++.+++++...+  + .++++++.+|+.+++...      
T Consensus       101 ~~~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~------  173 (336)
T PLN02823        101 HPNPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR------  173 (336)
T ss_pred             CCCCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC------
Confidence            44688999999999999999988644 5789999999999999999986432  1 368999999999988653      


Q ss_pred             CCCeeEEEEcCCcc---------chHHHHH-HHHhccCCCeEEEEe
Q 026461          145 EGSFDYAFVDADKD---------NYCNYHE-RLMKLLKVGGIAVYD  180 (238)
Q Consensus       145 ~~~fD~V~~d~~~~---------~~~~~~~-~~~~~L~~gG~lv~~  180 (238)
                      .++||+||+|...+         ...++++ .+.+.|+|||+++++
T Consensus       174 ~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        174 DEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             CCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            57899999995321         1356887 889999999999875

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.44  E-value=1.3e-12  Score=110.17  Aligned_cols=99  Identities=19%  Similarity=0.264  Sum_probs=80.9

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++++|||+|||+|..+.+++..   +.+|+++|+++.+++.+++++...++  ++++...|....  .+      .++
T Consensus       118 ~~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~--~~------~~~  184 (287)
T PRK12335        118 TVKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSA--SI------QEE  184 (287)
T ss_pred             ccCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcc--cc------cCC
Confidence            346779999999999999999974   57999999999999999999988887  588888887543  11      478


Q ss_pred             eeEEEEcCC-----ccchHHHHHHHHhccCCCeEEEE
Q 026461          148 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       148 fD~V~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ||+|++...     ......+++.+.+.|+|||++++
T Consensus       185 fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~  221 (287)
T PRK12335        185 YDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI  221 (287)
T ss_pred             ccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            999987642     23567889999999999998655

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.44  E-value=3.7e-12  Score=100.13  Aligned_cols=127  Identities=21%  Similarity=0.255  Sum_probs=97.4

Q ss_pred             CccCcHhHHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec
Q 026461           51 MMGTAPDAGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES  129 (238)
Q Consensus        51 ~~~~~~~~~~~l~~l~~~-~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~  129 (238)
                      .|+.+...+.++..+... ..+.++||+.||+|..++..++.-  ..+|+.||.++.++...++|++..+..++++++.+
T Consensus        22 RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~   99 (183)
T PF03602_consen   22 RPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKG   99 (183)
T ss_dssp             -SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEES
T ss_pred             CCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeecc
Confidence            456667777777777766 788999999999999999877642  46999999999999999999999999888999999


Q ss_pred             chhHHHHHHHhcccCCCCeeEEEEcCCcc--c-hHHHHHHHH--hccCCCeEEEEecc
Q 026461          130 EALSVLDQLLKYSENEGSFDYAFVDADKD--N-YCNYHERLM--KLLKVGGIAVYDNT  182 (238)
Q Consensus       130 d~~~~l~~~~~~~~~~~~fD~V~~d~~~~--~-~~~~~~~~~--~~L~~gG~lv~~~~  182 (238)
                      |+...+..+...   ..+||+||+|.+-.  . +...++.+.  .+|+++|+|++...
T Consensus       100 d~~~~l~~~~~~---~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~  154 (183)
T PF03602_consen  100 DAFKFLLKLAKK---GEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHS  154 (183)
T ss_dssp             SHHHHHHHHHHC---TS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             CHHHHHHhhccc---CCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence            999888776433   68999999997533  2 366777776  78999999999753

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.43  E-value=3.4e-14  Score=100.68  Aligned_cols=96  Identities=24%  Similarity=0.335  Sum_probs=62.9

Q ss_pred             EEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEc
Q 026461           75 IEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD  154 (238)
Q Consensus        75 LeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d  154 (238)
                      ||||||+|..+..++..++ ..+++++|+|+.+++.+++.+...+... ......+..+.....     ..++||+|++.
T Consensus         1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~fD~V~~~   73 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELP-DARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYD-----PPESFDLVVAS   73 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CC-----C----SEEEEE
T ss_pred             CEeCccChHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcc-----cccccceehhh
Confidence            7999999999999999986 8999999999999999999988876533 334433333332211     12599999987


Q ss_pred             CC---ccchHHHHHHHHhccCCCeEE
Q 026461          155 AD---KDNYCNYHERLMKLLKVGGIA  177 (238)
Q Consensus       155 ~~---~~~~~~~~~~~~~~L~~gG~l  177 (238)
                      ..   .......++.+.++|+|||+|
T Consensus        74 ~vl~~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   74 NVLHHLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             -TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred             hhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence            43   356678899999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK08317 hypothetical protein; Provisional

Probab=99.43  E-value=2.8e-12  Score=104.59  Aligned_cols=113  Identities=19%  Similarity=0.336  Sum_probs=89.3

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           65 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      .+...++.+|||+|||+|..+..++..+++.++++++|+++..++.++++..  ....++++..+|+.+..  +     .
T Consensus        14 ~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~--~-----~   84 (241)
T PRK08317         14 LLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLP--F-----P   84 (241)
T ss_pred             HcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCC--C-----C
Confidence            4455677899999999999999999987547899999999999999998733  22356899998875531  1     2


Q ss_pred             CCCeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEeccccCc
Q 026461          145 EGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  186 (238)
Q Consensus       145 ~~~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (238)
                      .++||+|++...   ..+...+++.+.++|+|||.+++....+..
T Consensus        85 ~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  129 (241)
T PRK08317         85 DGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDT  129 (241)
T ss_pred             CCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCc
Confidence            478999998743   345678999999999999999987765443

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.43  E-value=2.2e-12  Score=105.39  Aligned_cols=108  Identities=17%  Similarity=0.309  Sum_probs=88.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++.+|||+|||+|..+..++...+...+++++|+++.+++.+++++...+...++++..+|+.+..  .     ..++
T Consensus        49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~-----~~~~  121 (239)
T PRK00216         49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP--F-----PDNS  121 (239)
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC--C-----CCCC
Confidence            34567999999999999999999876568999999999999999999887666667999999986642  1     1478


Q ss_pred             eeEEEEcC---CccchHHHHHHHHhccCCCeEEEEecc
Q 026461          148 FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       148 fD~V~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      ||+|++..   .......+++.+.++|+|||.+++.+.
T Consensus       122 ~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~  159 (239)
T PRK00216        122 FDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF  159 (239)
T ss_pred             ccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence            99999764   344567889999999999999887554

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.42  E-value=8.6e-13  Score=109.09  Aligned_cols=113  Identities=14%  Similarity=0.222  Sum_probs=85.0

Q ss_pred             cHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH
Q 026461           55 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV  134 (238)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (238)
                      ....+..+...+...++.+|||+|||+|..+..++..   ..+|+++|+++.+++.++++..      ...++++|+.+.
T Consensus        27 q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~   97 (251)
T PRK10258         27 QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESL   97 (251)
T ss_pred             HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccC
Confidence            3444444444444445689999999999999988863   5799999999999999987642      246788888654


Q ss_pred             HHHHHhcccCCCCeeEEEEcC---CccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          135 LDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       135 l~~~~~~~~~~~~fD~V~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                       + +     ..++||+|++..   +..+....+.++.+.|+|||.+++....
T Consensus        98 -~-~-----~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~  142 (251)
T PRK10258         98 -P-L-----ATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLV  142 (251)
T ss_pred             -c-C-----CCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence             2 1     256899999874   3456678899999999999999987543

>PRK06922 hypothetical protein; Provisional

Probab=99.42  E-value=2.3e-12  Score=117.02  Aligned_cols=112  Identities=16%  Similarity=0.246  Sum_probs=87.8

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhccc
Q 026461           64 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE  143 (238)
Q Consensus        64 ~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~  143 (238)
                      .+....++.+|||||||+|..+..++..++ ..+|+|+|+++.+++.|+++....+  .+++++++|+.+....+     
T Consensus       412 ~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~f-----  483 (677)
T PRK06922        412 IILDYIKGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSF-----  483 (677)
T ss_pred             HHhhhcCCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCcccc-----
Confidence            344455778999999999999999998876 8899999999999999998876544  35888999987642112     


Q ss_pred             CCCCeeEEEEcCCc----------------cchHHHHHHHHhccCCCeEEEEeccc
Q 026461          144 NEGSFDYAFVDADK----------------DNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       144 ~~~~fD~V~~d~~~----------------~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      .+++||+|++....                .....+++.+.+.|||||.+++.+..
T Consensus       484 edeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v  539 (677)
T PRK06922        484 EKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI  539 (677)
T ss_pred             CCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence            25789999875321                23467888999999999999997654

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.42  E-value=3.5e-12  Score=105.38  Aligned_cols=100  Identities=15%  Similarity=0.111  Sum_probs=79.5

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeE
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  150 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~  150 (238)
                      +.+|||+|||+|..++.++...+ ..+|+++|+++.+++.|++|+..++    ++++++|..+.++...     .++||+
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~-----~~~fDl  156 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTAL-----RGRVDI  156 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhc-----CCCEeE
Confidence            35899999999999999998776 6799999999999999999998765    4788999877554321     357999


Q ss_pred             EEEcCCccc-----------------------------hHHHHHHHHhccCCCeEEEEe
Q 026461          151 AFVDADKDN-----------------------------YCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       151 V~~d~~~~~-----------------------------~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      |++|.+...                             +..++..+.++|+|||.+++.
T Consensus       157 Vv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~  215 (251)
T TIGR03704       157 LAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE  215 (251)
T ss_pred             EEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            999863210                             235666667899999999986

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=1.2e-11  Score=102.64  Aligned_cols=115  Identities=21%  Similarity=0.231  Sum_probs=90.3

Q ss_pred             cCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           53 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      .++....-++..+.... ..+|||+|||.|..++.+++..| ..+++.+|++..+++.+++|+..++..+. .+...|..
T Consensus       142 ~lD~GS~lLl~~l~~~~-~~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~  218 (300)
T COG2813         142 KLDKGSRLLLETLPPDL-GGKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLY  218 (300)
T ss_pred             CcChHHHHHHHhCCccC-CCcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEeccc
Confidence            45555566666655443 44999999999999999999987 89999999999999999999999888653 66777765


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcCCccc----h----HHHHHHHHhccCCCeEEEE
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDADKDN----Y----CNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~~~~~----~----~~~~~~~~~~L~~gG~lv~  179 (238)
                      +-.         .++||+|+++.+.+.    .    ..++....++|++||-|.+
T Consensus       219 ~~v---------~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~i  264 (300)
T COG2813         219 EPV---------EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWI  264 (300)
T ss_pred             ccc---------cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEE
Confidence            542         359999999865332    2    3788888899999996544

>TIGR00452 methyltransferase, putative

Probab=99.42  E-value=2.8e-12  Score=108.76  Aligned_cols=109  Identities=14%  Similarity=0.094  Sum_probs=81.5

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++++|||||||+|+.+..++...  ..+|+|+|+++.++..++..-...+...++.+..+++.+...        ..+
T Consensus       119 ~~~g~~VLDvGCG~G~~~~~~~~~g--~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~--------~~~  188 (314)
T TIGR00452       119 PLKGRTILDVGCGSGYHMWRMLGHG--AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE--------LYA  188 (314)
T ss_pred             CCCCCEEEEeccCCcHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC--------CCC
Confidence            3456899999999999999888753  248999999999887654433322333568888888755421        358


Q ss_pred             eeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEeccccCc
Q 026461          148 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  186 (238)
Q Consensus       148 fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (238)
                      ||+||+.+.   ..+....++.+.+.|+|||.+++......|
T Consensus       189 FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g  230 (314)
T TIGR00452       189 FDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDG  230 (314)
T ss_pred             cCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecC
Confidence            999998753   345568899999999999999998765444

Known examples to date are restricted to the proteobacteria.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.41  E-value=2.5e-12  Score=110.58  Aligned_cols=113  Identities=18%  Similarity=0.202  Sum_probs=86.8

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      +......++..+. .....+|||+|||+|..+..+++..+ ..+|+++|+++.+++.++++++.+++.  .+++.+|..+
T Consensus       181 lD~gt~lLl~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~  256 (342)
T PRK09489        181 LDVGSQLLLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFS  256 (342)
T ss_pred             CCHHHHHHHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEccccc
Confidence            3344454555443 33456899999999999999999876 789999999999999999999998864  4667777644


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCcc--------chHHHHHHHHhccCCCeEEEE
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKD--------NYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~--------~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      .   .      .++||+|+++.+.+        ....++..+.++|+|||.+++
T Consensus       257 ~---~------~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~i  301 (342)
T PRK09489        257 D---I------KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRI  301 (342)
T ss_pred             c---c------CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence            2   1      47899999985432        236788888999999998765

>PRK14967 putative methyltransferase; Provisional

Probab=99.40  E-value=7.6e-12  Score=101.70  Aligned_cols=99  Identities=16%  Similarity=0.187  Sum_probs=79.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .+..+|||+|||+|..+..++.. + ..+|+++|+++.+++.+++++...+.  +++++.+|..+.++        .++|
T Consensus        35 ~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~--------~~~f  102 (223)
T PRK14967         35 GPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVE--------FRPF  102 (223)
T ss_pred             CCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhcc--------CCCe
Confidence            44579999999999999998874 3 45999999999999999999988775  48889988766432        4689


Q ss_pred             eEEEEcCCcc------------------------chHHHHHHHHhccCCCeEEEE
Q 026461          149 DYAFVDADKD------------------------NYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       149 D~V~~d~~~~------------------------~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      |+|+++.+..                        .+..+++.+.++|++||.+++
T Consensus       103 D~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~  157 (223)
T PRK14967        103 DVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL  157 (223)
T ss_pred             eEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            9999984211                        024567778899999999886

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.40  E-value=4.7e-12  Score=101.43  Aligned_cols=105  Identities=17%  Similarity=0.179  Sum_probs=79.0

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           65 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      +....++.+|||+|||+|..+..++..++ ..+++|+|+|+++++.|++++      .++++.++|+.+.  .      .
T Consensus        38 l~~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~~--~------~  102 (204)
T TIGR03587        38 LNRLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFDP--F------K  102 (204)
T ss_pred             HHhcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccCC--C------C
Confidence            33455677999999999999999998765 689999999999999998764      2467888887662  1      2


Q ss_pred             CCCeeEEEEcCCcc-----chHHHHHHHHhccCCCeEEEEeccccCc
Q 026461          145 EGSFDYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTLWGG  186 (238)
Q Consensus       145 ~~~fD~V~~d~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (238)
                      .++||+|++.....     .....++++.+.+  ++.+++.+...+.
T Consensus       103 ~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~  147 (204)
T TIGR03587       103 DNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPS  147 (204)
T ss_pred             CCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence            57999999875432     2356677777776  4677777765444

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.40  E-value=3.1e-12  Score=100.60  Aligned_cols=104  Identities=17%  Similarity=0.222  Sum_probs=81.3

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           66 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      +...+++++||+|||.|..+++||+.   +-.|+++|.|+..++.+++.....+++  ++....|..+..  +      .
T Consensus        26 ~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~--~------~   92 (192)
T PF03848_consen   26 VPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFD--F------P   92 (192)
T ss_dssp             CTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS---------T
T ss_pred             HhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcc--c------c
Confidence            45567899999999999999999985   679999999999999999988888874  888888876652  2      4


Q ss_pred             CCeeEEEEc-----CCccchHHHHHHHHhccCCCeEEEEecc
Q 026461          146 GSFDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       146 ~~fD~V~~d-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      +.||+|+..     ...+..+..++.+...++|||++++...
T Consensus        93 ~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~  134 (192)
T PF03848_consen   93 EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF  134 (192)
T ss_dssp             TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence            689999864     2455667889999999999999888543

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.40  E-value=5.2e-12  Score=105.70  Aligned_cols=116  Identities=24%  Similarity=0.411  Sum_probs=88.0

Q ss_pred             cHhHHHHHHHHH---hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461           55 APDAGQLMAMLL---RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA  131 (238)
Q Consensus        55 ~~~~~~~l~~l~---~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (238)
                      .++...++..+.   ...++.+|||+|||+|..+..++...+ ..+|+++|+++.+++.+++++. .+...+++++.+|.
T Consensus        90 r~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~  167 (275)
T PRK09328         90 RPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDW  167 (275)
T ss_pred             CCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccc
Confidence            344455555444   234567999999999999999999886 7899999999999999999987 34446799999987


Q ss_pred             hHHHHHHHhcccCCCCeeEEEEcCCc-----------------------------cchHHHHHHHHhccCCCeEEEEe
Q 026461          132 LSVLDQLLKYSENEGSFDYAFVDADK-----------------------------DNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       132 ~~~l~~~~~~~~~~~~fD~V~~d~~~-----------------------------~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      .+.++        .++||+|+++.+.                             ..+..+++.+.++|+|||.+++.
T Consensus       168 ~~~~~--------~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e  237 (275)
T PRK09328        168 FEPLP--------GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE  237 (275)
T ss_pred             cCcCC--------CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence            54321        3689999986421                             11245667777999999999984

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=99.39  E-value=1.5e-11  Score=102.45  Aligned_cols=106  Identities=23%  Similarity=0.314  Sum_probs=91.5

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC--C-CCcEEEEecchhHHHHHHHhcccC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      ..++++||.||-|.|..+..++++.+ -.+++.||+++..++.+++++....  . ++|++++.+|+.+++...      
T Consensus        74 h~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~------  146 (282)
T COG0421          74 HPNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC------  146 (282)
T ss_pred             CCCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC------
Confidence            34558999999999999999999876 7899999999999999999997644  2 379999999999999876      


Q ss_pred             CCCeeEEEEcCCcc-c------hHHHHHHHHhccCCCeEEEEe
Q 026461          145 EGSFDYAFVDADKD-N------YCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       145 ~~~fD~V~~d~~~~-~------~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ..+||+|++|.... .      ..++++.+.++|+++|+++..
T Consensus       147 ~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         147 EEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             CCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            45899999996432 2      378999999999999999997

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.39  E-value=4.9e-12  Score=113.87  Aligned_cols=115  Identities=17%  Similarity=0.247  Sum_probs=89.3

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHH
Q 026461           58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ  137 (238)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~  137 (238)
                      ...++..+ ...++.+|||||||+|..+..++...  +.+|+++|+++.+++.|+++..  +...+++|.++|+.+..  
T Consensus       255 te~l~~~~-~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~--  327 (475)
T PLN02336        255 TKEFVDKL-DLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKT--  327 (475)
T ss_pred             HHHHHHhc-CCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCC--
Confidence            34444433 34567799999999999999999865  4699999999999999998765  44457999999986541  


Q ss_pred             HHhcccCCCCeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEecccc
Q 026461          138 LLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       138 ~~~~~~~~~~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      +     +.++||+|++...   ..+...+++.+.+.|+|||.+++.+...
T Consensus       328 ~-----~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  372 (475)
T PLN02336        328 Y-----PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR  372 (475)
T ss_pred             C-----CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence            1     1468999998643   3456788999999999999999987653

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=1.3e-11  Score=106.64  Aligned_cols=130  Identities=21%  Similarity=0.277  Sum_probs=103.5

Q ss_pred             CCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCC-CEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe
Q 026461           50 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPED-GQITAIDVNRETYEIGLPIIKKAGVDHKINFIE  128 (238)
Q Consensus        50 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~  128 (238)
                      +...++....++...++...++.+|||.+++.|+=|.++++.+... ..|+++|.++..+...++++.+.|+.+ +.+.+
T Consensus       136 G~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~  214 (355)
T COG0144         136 GLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVN  214 (355)
T ss_pred             eEEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEe
Confidence            3345667778888888888888999999999999999999998753 456999999999999999999999976 88888


Q ss_pred             cchhHHHHHHHhcccCCCCeeEEEEcCCccch-------------------------HHHHHHHHhccCCCeEEEEeccc
Q 026461          129 SEALSVLDQLLKYSENEGSFDYAFVDADKDNY-------------------------CNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       129 ~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~-------------------------~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      .|+........    ..++||.|++|++++..                         .+++..++++|||||+|+.+.+.
T Consensus       215 ~d~~~~~~~~~----~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS  290 (355)
T COG0144         215 KDARRLAELLP----GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS  290 (355)
T ss_pred             ccccccccccc----ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence            88765543331    12369999999764331                         35677778999999999987766


Q ss_pred             c
Q 026461          184 W  184 (238)
Q Consensus       184 ~  184 (238)
                      .
T Consensus       291 ~  291 (355)
T COG0144         291 L  291 (355)
T ss_pred             C
Confidence            4

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.39  E-value=7.4e-12  Score=108.95  Aligned_cols=118  Identities=17%  Similarity=0.241  Sum_probs=88.9

Q ss_pred             CcHhHHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           54 TAPDAGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~-~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      ..++...++..+... .+..+|||+|||+|..++.++...+ ..+|+++|+|+.+++.|++|+...+.  +++++++|..
T Consensus       234 PRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~  310 (423)
T PRK14966        234 PRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGA--RVEFAHGSWF  310 (423)
T ss_pred             CCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchh
Confidence            345566666666543 3456999999999999999998766 78999999999999999999988764  6999999986


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcCCcc----------------------------chHHHHHHHHhccCCCeEEEEe
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDADKD----------------------------NYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~~~~----------------------------~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      +....      ..++||+|+++.+.-                            .+..+++.+.+.|+|||.+++.
T Consensus       311 e~~l~------~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE  380 (423)
T PRK14966        311 DTDMP------SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE  380 (423)
T ss_pred             ccccc------cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            53110      135899999975310                            0234555556799999998875

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.38  E-value=3.7e-12  Score=104.00  Aligned_cols=102  Identities=20%  Similarity=0.302  Sum_probs=82.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      ..+.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++.+.     .++.++.+|+.+...       ..++|
T Consensus        33 ~~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~-------~~~~f   99 (240)
T TIGR02072        33 FIPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPL-------EDSSF   99 (240)
T ss_pred             CCCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCC-------CCCce
Confidence            3457899999999999999999876 7789999999999998887653     368899998865421       25789


Q ss_pred             eEEEEcCC---ccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          149 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       149 D~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      |+|++...   ..+....++.+.+.|+|||.+++....
T Consensus       100 D~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~  137 (240)
T TIGR02072       100 DLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFG  137 (240)
T ss_pred             eEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            99998753   335678899999999999999987543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.38  E-value=9.6e-12  Score=103.80  Aligned_cols=120  Identities=22%  Similarity=0.349  Sum_probs=89.5

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCC-CcEEEEecchh
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEAL  132 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~  132 (238)
                      -.+..-..+..   ..+.++||++-|++|..+++.+..-  ..+|++||.|..+++.+++|+..++++ .+++++.+|+.
T Consensus       110 DqR~nR~~v~~---~~~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf  184 (286)
T PF10672_consen  110 DQRENRKWVRK---YAKGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVF  184 (286)
T ss_dssp             GGHHHHHHHHH---HCTTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HH
T ss_pred             HHHhhHHHHHH---HcCCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHH
Confidence            33444444444   4567899999999999999877642  358999999999999999999999987 67999999999


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcCCc---------cchHHHHHHHHhccCCCeEEEEecc
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDADK---------DNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~~~---------~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      +++..+..    .++||+|++|.+.         ..|..++..+.++|+|||+|++...
T Consensus       185 ~~l~~~~~----~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc  239 (286)
T PF10672_consen  185 KFLKRLKK----GGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC  239 (286)
T ss_dssp             HHHHHHHH----TT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred             HHHHHHhc----CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            98877543    4799999999642         3456778888899999999887554

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.37  E-value=1.5e-11  Score=105.06  Aligned_cols=102  Identities=12%  Similarity=0.061  Sum_probs=81.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .++.+|||+|||+|..++.++..   ..+|+++|+++.+++.|+++++..++ ++++|+++|+.++....      .+.|
T Consensus       172 ~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~------~~~~  241 (315)
T PRK03522        172 LPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQ------GEVP  241 (315)
T ss_pred             cCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhc------CCCC
Confidence            35689999999999999999983   46999999999999999999999998 56999999998875432      3579


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      |+|++|.+.......+......++|++++.++
T Consensus       242 D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvs  273 (315)
T PRK03522        242 DLVLVNPPRRGIGKELCDYLSQMAPRFILYSS  273 (315)
T ss_pred             eEEEECCCCCCccHHHHHHHHHcCCCeEEEEE
Confidence            99999987655444443334556787777764

>PRK03612 spermidine synthase; Provisional

Probab=99.37  E-value=4.7e-12  Score=114.82  Aligned_cols=107  Identities=19%  Similarity=0.320  Sum_probs=85.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHH--HHHc---CC-CCcEEEEecchhHHHHHHHhc
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI--IKKA---GV-DHKINFIESEALSVLDQLLKY  141 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~--~~~~---~~-~~~v~~~~~d~~~~l~~~~~~  141 (238)
                      ..++++||+||||+|..+..++++ ++..+|+++|+++++++.++++  +...   .+ .++++++.+|+.+.+...   
T Consensus       295 ~~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~---  370 (521)
T PRK03612        295 SARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL---  370 (521)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC---
Confidence            457889999999999999999875 4247999999999999999984  3321   12 258999999999887654   


Q ss_pred             ccCCCCeeEEEEcCCccc--------hHHHHHHHHhccCCCeEEEEec
Q 026461          142 SENEGSFDYAFVDADKDN--------YCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~~~~--------~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                         .++||+|++|...+.        ..++++.+.++|+|||+++++.
T Consensus       371 ---~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        371 ---AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             ---CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence               579999999964221        2468899999999999999864

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.36  E-value=1.2e-12  Score=105.66  Aligned_cols=99  Identities=19%  Similarity=0.213  Sum_probs=78.6

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCC-----cEEEEecchhHHHHHHHhcccCCC
Q 026461           72 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-----KINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-----~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ++|||+|||+|..+..||+.   +..|+|||+++++++.|++........+     ++++.+.++...          .+
T Consensus        91 ~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~----------~~  157 (282)
T KOG1270|consen   91 MKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL----------TG  157 (282)
T ss_pred             ceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc----------cc
Confidence            67999999999999999985   5799999999999999999944433322     356666665444          46


Q ss_pred             CeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          147 SFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       147 ~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      .||.|++.-.   ..+..+++..+.++|+|+|.+++.++-
T Consensus       158 ~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittin  197 (282)
T KOG1270|consen  158 KFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTIN  197 (282)
T ss_pred             ccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence            7999998743   334578888999999999999997754

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.36  E-value=1.1e-11  Score=106.49  Aligned_cols=117  Identities=18%  Similarity=0.210  Sum_probs=93.1

Q ss_pred             cCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           53 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      .+.+..+..+..++...++.+|||+|||+|..++..+..   ..+++|+|+++.+++.+++|+..+++.+ +.+.++|+.
T Consensus       165 ~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~  240 (329)
T TIGR01177       165 SMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDAT  240 (329)
T ss_pred             CCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchh
Confidence            355666666666666667779999999999998876653   5799999999999999999999999876 899999987


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcCCc------------cchHHHHHHHHhccCCCeEEEEe
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      +. +.      ..++||+|++|.+.            ..+..+++.+.+.|+|||.+++-
T Consensus       241 ~l-~~------~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~  293 (329)
T TIGR01177       241 KL-PL------SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA  293 (329)
T ss_pred             cC-Cc------ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence            64 21      14799999998531            11467888889999999988874

This family is found exclusively in the Archaea.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.35  E-value=2e-11  Score=97.08  Aligned_cols=101  Identities=25%  Similarity=0.372  Sum_probs=84.6

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEE
Q 026461           73 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  152 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~  152 (238)
                      .+||||||.|.+.+.+|...| +..++|+|+....+..+.+.+...++. ++.++.+|+...+..+.    .++++|-|+
T Consensus        20 l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~~----~~~~v~~i~   93 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRRLF----PPGSVDRIY   93 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHHHS----TTTSEEEEE
T ss_pred             eEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhhcc----cCCchheEE
Confidence            899999999999999999988 899999999999999999999998884 59999999999888774    358999999


Q ss_pred             EcC---Ccc--------chHHHHHHHHhccCCCeEEEE
Q 026461          153 VDA---DKD--------NYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       153 ~d~---~~~--------~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      +.-   ++.        -.+.+++.+.+.|+|||.|.+
T Consensus        94 i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~  131 (195)
T PF02390_consen   94 INFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYF  131 (195)
T ss_dssp             EES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEE
T ss_pred             EeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEE
Confidence            863   211        137899999999999998876

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.35  E-value=4.1e-11  Score=97.91  Aligned_cols=113  Identities=19%  Similarity=0.239  Sum_probs=88.2

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHH
Q 026461           59 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL  138 (238)
Q Consensus        59 ~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~  138 (238)
                      ..++.......++.+|||||||+|..+..+++.   ..+++++|+++..++.+++++...+.  .+++..++..+.....
T Consensus        37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~  111 (233)
T PRK05134         37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEH  111 (233)
T ss_pred             HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhc
Confidence            445555544556789999999999999988874   46899999999999999999877665  4788888887664322


Q ss_pred             HhcccCCCCeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEecc
Q 026461          139 LKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       139 ~~~~~~~~~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                            .++||+|++...   ..+....++.+.+.|+|||.+++...
T Consensus       112 ------~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~  152 (233)
T PRK05134        112 ------PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL  152 (233)
T ss_pred             ------CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence                  479999998642   33556788999999999999998653

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.35  E-value=1.5e-11  Score=99.47  Aligned_cols=106  Identities=21%  Similarity=0.329  Sum_probs=85.7

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++.+|||+|||+|..+..++...+...+++++|+++.+++.+++++.   ...++++..+|+.+..  .     ..++
T Consensus        37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~--~-----~~~~  106 (223)
T TIGR01934        37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALP--F-----EDNS  106 (223)
T ss_pred             cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCC--C-----CCCc
Confidence            4467899999999999999999988744799999999999999998875   3356899999987642  1     1468


Q ss_pred             eeEEEEcC---CccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          148 FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       148 fD~V~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ||+|++..   ........++.+.+.|+|||.+++.+..
T Consensus       107 ~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  145 (223)
T TIGR01934       107 FDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS  145 (223)
T ss_pred             EEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence            99998763   3445678889999999999999886543

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.34  E-value=1.5e-11  Score=107.51  Aligned_cols=102  Identities=17%  Similarity=0.205  Sum_probs=81.6

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ...++.+|||||||+|..+..+++..  +.+|+++|+++++++.|++++.  ++  .+++..+|..+.          .+
T Consensus       164 ~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l----------~~  227 (383)
T PRK11705        164 QLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL----------NG  227 (383)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc----------CC
Confidence            34567799999999999999999865  4699999999999999999874  32  378888886543          36


Q ss_pred             CeeEEEEcCC-----ccchHHHHHHHHhccCCCeEEEEecccc
Q 026461          147 SFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       147 ~fD~V~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      +||.|+....     ...+..+++.+.++|+|||.+++.....
T Consensus       228 ~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~  270 (383)
T PRK11705        228 QFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGS  270 (383)
T ss_pred             CCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence            8999986532     3345788999999999999999976543

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=99.34  E-value=2.2e-11  Score=100.25  Aligned_cols=107  Identities=19%  Similarity=0.221  Sum_probs=86.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCC---CCcEEEEecchhHHHHHHHhcccC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV---DHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      ..++++||-||-|.|..+..++++.+ ..+|++||+++..++.+++++.....   ++|++++.+|+..++...      
T Consensus        74 ~~~p~~VLiiGgG~G~~~~ell~~~~-~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~------  146 (246)
T PF01564_consen   74 HPNPKRVLIIGGGDGGTARELLKHPP-VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET------  146 (246)
T ss_dssp             SSST-EEEEEESTTSHHHHHHTTSTT--SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS------
T ss_pred             CCCcCceEEEcCCChhhhhhhhhcCC-cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc------
Confidence            44799999999999999999987643 67999999999999999999876432   368999999999998875      


Q ss_pred             CC-CeeEEEEcCCcc-------chHHHHHHHHhccCCCeEEEEec
Q 026461          145 EG-SFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       145 ~~-~fD~V~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      .+ +||+|++|...+       ...++++.+.+.|+|||++++..
T Consensus       147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  147 QEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             SST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence            45 899999996431       13789999999999999999875

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.34  E-value=1.6e-11  Score=102.85  Aligned_cols=118  Identities=21%  Similarity=0.397  Sum_probs=87.8

Q ss_pred             cHhHHHHHHHHH-hhc-CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           55 APDAGQLMAMLL-RLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        55 ~~~~~~~l~~l~-~~~-~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      .+++..++..+. ... .+.+|||+|||+|..++.++...+ ..+|+++|+|+.+++.|++|+..+++ .++.++.+|..
T Consensus        93 r~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf  170 (280)
T COG2890          93 RPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLF  170 (280)
T ss_pred             CCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecc
Confidence            445666666533 111 222799999999999999999987 78999999999999999999999998 55666666543


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcCC---cc-------------------------chHHHHHHHHhccCCCeEEEEeccc
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDAD---KD-------------------------NYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~~---~~-------------------------~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                         +.+      .++||+|+++.+   ..                         .+..++..+...|+|||++++.--.
T Consensus       171 ---~~~------~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~  240 (280)
T COG2890         171 ---EPL------RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL  240 (280)
T ss_pred             ---ccc------CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC
Confidence               333      469999998742   11                         1245666667899999999986433

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.33  E-value=1.2e-11  Score=99.74  Aligned_cols=102  Identities=13%  Similarity=0.106  Sum_probs=76.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCC--------------CCcEEEEecchhHHH
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--------------DHKINFIESEALSVL  135 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--------------~~~v~~~~~d~~~~l  135 (238)
                      ++.+|||+|||.|..+++||+.   +-+|+++|+|+.+++.+.+.   .++              ..+++++++|..+..
T Consensus        34 ~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~  107 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT  107 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEEEEccCCCCC
Confidence            5579999999999999999974   67999999999999976432   121              246899999998763


Q ss_pred             HHHHhcccCCCCeeEEEEcC-----CccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          136 DQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       136 ~~~~~~~~~~~~fD~V~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ...      .++||.|+-..     +......+++.+.++|+|||++++....
T Consensus       108 ~~~------~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~  154 (213)
T TIGR03840       108 AAD------LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD  154 (213)
T ss_pred             ccc------CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence            321      35788887432     2334467899999999999986665443

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.32  E-value=6.1e-11  Score=95.97  Aligned_cols=110  Identities=25%  Similarity=0.364  Sum_probs=92.2

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhccc
Q 026461           64 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE  143 (238)
Q Consensus        64 ~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~  143 (238)
                      .+........+||||||.|.+.+.+|...| +..++|||+....+..+.+.+.+.++. +++++++|+.+++..+.+   
T Consensus        42 ~~f~~~~~pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~---  116 (227)
T COG0220          42 ALFGNNNAPIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIP---  116 (227)
T ss_pred             HHhCCCCCcEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCC---
Confidence            343333346899999999999999999988 789999999999999999999999986 799999999999988842   


Q ss_pred             CCCCeeEEEEc---CCcc--c------hHHHHHHHHhccCCCeEEEE
Q 026461          144 NEGSFDYAFVD---ADKD--N------YCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       144 ~~~~fD~V~~d---~~~~--~------~~~~~~~~~~~L~~gG~lv~  179 (238)
                       .++.|-|++.   .|+.  +      .+.+++.+.+.|+|||.|.+
T Consensus       117 -~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~  162 (227)
T COG0220         117 -DGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHF  162 (227)
T ss_pred             -CCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEE
Confidence             4699988874   3321  1      47899999999999999987

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.32  E-value=2.5e-11  Score=93.00  Aligned_cols=108  Identities=25%  Similarity=0.294  Sum_probs=79.6

Q ss_pred             HhHHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH
Q 026461           56 PDAGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV  134 (238)
Q Consensus        56 ~~~~~~l~~l~~-~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (238)
                      .....++..+.. ..+.++|||||||.|..+..++..   ..+|+++|+++.+++.           .++.....+..+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~   72 (161)
T PF13489_consen    7 RAYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDP   72 (161)
T ss_dssp             HCHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH-----------TTSEEEEEECHTH
T ss_pred             HHHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhh
Confidence            445667777765 567889999999999999999764   3499999999999887           1122222222222


Q ss_pred             HHHHHhcccCCCCeeEEEEcCCc---cchHHHHHHHHhccCCCeEEEEecccc
Q 026461          135 LDQLLKYSENEGSFDYAFVDADK---DNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       135 l~~~~~~~~~~~~fD~V~~d~~~---~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      ..       ..++||+|++....   .+...+++.+.++|+|||++++.....
T Consensus        73 ~~-------~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~  118 (161)
T PF13489_consen   73 PF-------PDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR  118 (161)
T ss_dssp             HC-------HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred             hc-------cccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            11       16899999987643   356788999999999999999987653

...

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.31  E-value=2.9e-11  Score=97.29  Aligned_cols=100  Identities=15%  Similarity=0.195  Sum_probs=73.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhcccCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENE  145 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~~~~~  145 (238)
                      ..++.+|||||||+|.++..+++..++.++|++||+++.           .+. .+++++++|+.+.  ++.+... ...
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~-~~v~~i~~D~~~~~~~~~i~~~-~~~  115 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPI-VGVDFLQGDFRDELVLKALLER-VGD  115 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCC-CCcEEEecCCCChHHHHHHHHH-hCC
Confidence            346679999999999999999998866789999999881           122 3489999998763  2222111 125


Q ss_pred             CCeeEEEEcCCccc--------------hHHHHHHHHhccCCCeEEEEe
Q 026461          146 GSFDYAFVDADKDN--------------YCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       146 ~~fD~V~~d~~~~~--------------~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ++||+|+++..+..              ....++.+.+.|+|||.+++.
T Consensus       116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~  164 (209)
T PRK11188        116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK  164 (209)
T ss_pred             CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            78999999753211              134678888999999999985

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.31  E-value=4.9e-11  Score=96.65  Aligned_cols=101  Identities=18%  Similarity=0.224  Sum_probs=80.2

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++.+|||+|||+|..+..++..   ..+|+|+|+++++++.|++++...+..+++.+.++|+.+.          .++
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----------~~~  119 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL----------CGE  119 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC----------CCC
Confidence            346789999999999999999874   4599999999999999999998877666799999997654          368


Q ss_pred             eeEEEEcCC-----ccchHHHHHHHHhccCCCeEEEEec
Q 026461          148 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       148 fD~V~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ||+|++...     .......+..+.+.+++++++.+.+
T Consensus       120 fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~  158 (219)
T TIGR02021       120 FDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAP  158 (219)
T ss_pred             cCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence            999987432     1234566777888888877777643

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PTZ00146 fibrillarin; Provisional

Probab=99.31  E-value=3.2e-11  Score=100.48  Aligned_cols=119  Identities=15%  Similarity=0.116  Sum_probs=82.8

Q ss_pred             cHhHHHHHHHHH--hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           55 APDAGQLMAMLL--RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        55 ~~~~~~~l~~l~--~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      +.-.+.++.-+-  ...+..+|||+|||+|.++.+++..+.+.++|+++|+++.+.+...+.....   .++.++.+|+.
T Consensus       115 SKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~  191 (293)
T PTZ00146        115 SKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDAR  191 (293)
T ss_pred             cHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCcc
Confidence            333344444333  2456679999999999999999999876789999999987655444433221   46888999986


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcCCccchH-HHHHHHHhccCCCeEEEEe
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDADKDNYC-NYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~~~~~~~-~~~~~~~~~L~~gG~lv~~  180 (238)
                      .......    ..+.+|+||+|....+.. .++.++.+.|||||.+++.
T Consensus       192 ~p~~y~~----~~~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        192 YPQKYRM----LVPMVDVIFADVAQPDQARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             Chhhhhc----ccCCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence            4311110    135899999997544433 4455778899999999983

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.31  E-value=2.4e-11  Score=109.37  Aligned_cols=109  Identities=26%  Similarity=0.295  Sum_probs=81.7

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           65 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      ++...+.++|||||||+|..+..+++..   .+|+++|+++.+++.+++..   +...+++++++|+......+     +
T Consensus        32 ~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~~~~~-----~  100 (475)
T PLN02336         32 LLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSPDLNI-----S  100 (475)
T ss_pred             hcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHh---ccCCceEEEEecccccccCC-----C
Confidence            3334456799999999999999999863   58999999999998776532   33356899999985421111     2


Q ss_pred             CCCeeEEEEcCCccc-----hHHHHHHHHhccCCCeEEEEecccc
Q 026461          145 EGSFDYAFVDADKDN-----YCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      .++||+|++......     ...+++.+.+.|+|||++++.+..+
T Consensus       101 ~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~  145 (475)
T PLN02336        101 DGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCF  145 (475)
T ss_pred             CCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence            478999998753222     4678889999999999999977654

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.31  E-value=2.8e-11  Score=103.57  Aligned_cols=99  Identities=16%  Similarity=0.150  Sum_probs=79.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      +..+|||||||+|..+..+++..+ ..+|+++|+++++++.++++...    .+++++.+|+.+. + +     ..++||
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~l-p-~-----~~~sFD  180 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDL-P-F-----PTDYAD  180 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhC-C-C-----CCCcee
Confidence            456999999999999999998775 57999999999999999987542    3588899998654 1 1     247899


Q ss_pred             EEEEcCC---ccchHHHHHHHHhccCCCeEEEEe
Q 026461          150 YAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       150 ~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      +|++...   ..+....++++.+.|+|||.+++-
T Consensus       181 vVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi  214 (340)
T PLN02490        181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLI  214 (340)
T ss_pred             EEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence            9998643   234567899999999999998774

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.31  E-value=7e-11  Score=105.39  Aligned_cols=104  Identities=14%  Similarity=0.160  Sum_probs=84.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .+..+|||+|||+|..++.++...   .+|+++|+++++++.|++++..+++. +++++.+|+.+.+....-   ...+|
T Consensus       296 ~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l~~~~~---~~~~f  368 (443)
T PRK13168        296 QPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDFTDQPW---ALGGF  368 (443)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhhhhhhh---hcCCC
Confidence            355799999999999999999864   59999999999999999999988875 599999999876543210   13579


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      |+|++|.+.......++.+.+ +++++++.++
T Consensus       369 D~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvS  399 (443)
T PRK13168        369 DKVLLDPPRAGAAEVMQALAK-LGPKRIVYVS  399 (443)
T ss_pred             CEEEECcCCcChHHHHHHHHh-cCCCeEEEEE
Confidence            999999877666777766655 6888887775

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.30  E-value=8.6e-11  Score=104.55  Aligned_cols=104  Identities=15%  Similarity=0.114  Sum_probs=84.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .+..+|||+|||+|..++.++...   .+|+++|+++.+++.|++|+..+++ ++++++.+|+.+.++.+...   ..+|
T Consensus       291 ~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l~~~~~~---~~~~  363 (431)
T TIGR00479       291 QGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVLPKQPWA---GQIP  363 (431)
T ss_pred             CCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHHHHHHhc---CCCC
Confidence            345799999999999999999863   5899999999999999999999887 46999999998876654211   3579


Q ss_pred             eEEEEcCCccc-hHHHHHHHHhccCCCeEEEEe
Q 026461          149 DYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       149 D~V~~d~~~~~-~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      |+|++|.+... ...+++.+. .++|++++.++
T Consensus       364 D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyvs  395 (431)
T TIGR00479       364 DVLLLDPPRKGCAAEVLRTII-ELKPERIVYVS  395 (431)
T ss_pred             CEEEECcCCCCCCHHHHHHHH-hcCCCEEEEEc
Confidence            99999987555 567777654 47898887764

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.29  E-value=8.9e-11  Score=97.74  Aligned_cols=105  Identities=23%  Similarity=0.281  Sum_probs=76.6

Q ss_pred             CCCEEEEEcccccH----HHHHHHhhCCC----CCEEEEEeCCchhHHHHHHHHH----HcC------------------
Q 026461           70 NAKKTIEIGVFTGY----SLLLTALTIPE----DGQITAIDVNRETYEIGLPIIK----KAG------------------  119 (238)
Q Consensus        70 ~~~~vLeiG~G~G~----~t~~la~~~~~----~~~v~~iD~~~~~~~~a~~~~~----~~~------------------  119 (238)
                      ++.+|+++|||+|.    .++.+++..+.    ..+|+|+|+|+.+++.|++.+-    ..+                  
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45699999999997    45556665442    4789999999999999987531    001                  


Q ss_pred             ----CCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCc-----cchHHHHHHHHhccCCCeEEEEec
Q 026461          120 ----VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       120 ----~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                          +..+|+|.++|..+..+       ..++||+|++....     ......++.+.+.|+|||++++..
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~-------~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESP-------PLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCC-------ccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence                12468898888876422       14799999986432     234568899999999999999854

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR03438 probable methyltransferase

Probab=99.29  E-value=8.5e-11  Score=99.74  Aligned_cols=109  Identities=13%  Similarity=0.105  Sum_probs=79.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      ++.+|||+|||+|..|..+++.++...+|+++|+|+++++.+++.+......-++.++++|..+.++.....  ......
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~--~~~~~~  140 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEP--AAGRRL  140 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhccc--ccCCeE
Confidence            557899999999999999999886457899999999999999998876432235778899987654332100  011333


Q ss_pred             EEEEcCC-----ccchHHHHHHHHhccCCCeEEEEe
Q 026461          150 YAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       150 ~V~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      +++++..     ......+++.+.+.|+|||.+++.
T Consensus       141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig  176 (301)
T TIGR03438       141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG  176 (301)
T ss_pred             EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            4555432     223456899999999999999874

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.29  E-value=3.5e-11  Score=97.27  Aligned_cols=99  Identities=11%  Similarity=0.120  Sum_probs=75.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCC--------------CCcEEEEecchhHH
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--------------DHKINFIESEALSV  134 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--------------~~~v~~~~~d~~~~  134 (238)
                      .+..+||++|||.|..+++||+.   +.+|++||+++.+++.+.+   +.++              ..+|++.++|+.+.
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l  109 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFAL  109 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCC
Confidence            34579999999999999999984   6799999999999997642   2222              25689999999876


Q ss_pred             HHHHHhcccCCCCeeEEEEc-----CCccchHHHHHHHHhccCCCeEEEE
Q 026461          135 LDQLLKYSENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       135 l~~~~~~~~~~~~fD~V~~d-----~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      .+..      .+.||+|+-.     .+++....++..+.++|+|||++++
T Consensus       110 ~~~~------~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        110 TAAD------LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             Cccc------CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence            4321      3689999833     2344557889999999999986444

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.28  E-value=1.4e-10  Score=101.21  Aligned_cols=101  Identities=14%  Similarity=0.115  Sum_probs=82.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .++.+|||+|||+|..++.++..   ..+|+++|+++.+++.|++|++.+++. +++|+.+|+.+.+...      ..+|
T Consensus       232 ~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~------~~~~  301 (374)
T TIGR02085       232 IPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQ------MSAP  301 (374)
T ss_pred             cCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhc------CCCC
Confidence            35679999999999999999963   468999999999999999999999885 6999999998876542      3569


Q ss_pred             eEEEEcCCccch-HHHHHHHHhccCCCeEEEEe
Q 026461          149 DYAFVDADKDNY-CNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       149 D~V~~d~~~~~~-~~~~~~~~~~L~~gG~lv~~  180 (238)
                      |+|++|.+.... ...++.+. .++|++++.++
T Consensus       302 D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvs  333 (374)
T TIGR02085       302 ELVLVNPPRRGIGKELCDYLS-QMAPKFILYSS  333 (374)
T ss_pred             CEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEE
Confidence            999999875543 45555554 57898888775

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.27  E-value=5.7e-11  Score=98.55  Aligned_cols=116  Identities=20%  Similarity=0.181  Sum_probs=83.1

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhc
Q 026461           62 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY  141 (238)
Q Consensus        62 l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~  141 (238)
                      +...+....+++|||||||.||.+..++..-  ...|+|+|.++....+.+..-.-.|....+.++..-+ +.++.    
T Consensus       107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~~G--A~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgv-E~Lp~----  179 (315)
T PF08003_consen  107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRG--AKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGV-EDLPN----  179 (315)
T ss_pred             HHhhhCCcCCCEEEEecCCCcHHHHHHhhcC--CCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcch-hhccc----
Confidence            3334445678999999999999999999863  3679999999987766554433444433344443223 33332    


Q ss_pred             ccCCCCeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEeccccCcc
Q 026461          142 SENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGGT  187 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~  187 (238)
                         .+.||+||+-+.   ..+....+..+...|++||.+|++.....|.
T Consensus       180 ---~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~  225 (315)
T PF08003_consen  180 ---LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGD  225 (315)
T ss_pred             ---cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCC
Confidence               379999998763   4556778889999999999999988876654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.27  E-value=9.5e-11  Score=94.33  Aligned_cols=115  Identities=17%  Similarity=0.207  Sum_probs=92.0

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCC-----CEEEEEeCCchhHHHHHHHHHHcCCCCc--EEEEecc
Q 026461           58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPED-----GQITAIDVNRETYEIGLPIIKKAGVDHK--INFIESE  130 (238)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~-----~~v~~iD~~~~~~~~a~~~~~~~~~~~~--v~~~~~d  130 (238)
                      ...+.-..+...+..++||++||+|-.+..+.++....     ++|+.+|++|++++.+++...+.++...  +.++.+|
T Consensus        88 WKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~d  167 (296)
T KOG1540|consen   88 WKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGD  167 (296)
T ss_pred             HHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCC
Confidence            33333334444456799999999999999999988742     8999999999999999999888787654  8999999


Q ss_pred             hhHHHHHHHhcccCCCCeeEEEEcC---CccchHHHHHHHHhccCCCeEEEE
Q 026461          131 ALSVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       131 ~~~~l~~~~~~~~~~~~fD~V~~d~---~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ++++ |      +...+||...+.-   ...+.+..++++++.|||||.+.+
T Consensus       168 AE~L-p------Fdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~c  212 (296)
T KOG1540|consen  168 AEDL-P------FDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSC  212 (296)
T ss_pred             cccC-C------CCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEE
Confidence            9776 2      2368999988764   345668889999999999998765

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.27  E-value=2.1e-10  Score=89.26  Aligned_cols=126  Identities=18%  Similarity=0.206  Sum_probs=99.5

Q ss_pred             CccCcHhHHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec
Q 026461           51 MMGTAPDAGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES  129 (238)
Q Consensus        51 ~~~~~~~~~~~l~~l~~-~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~  129 (238)
                      .|+.++..+.+...+.. .....++||+-+|+|..++..++.-  ..+++.||.+...+...++|++..+...+++++..
T Consensus        23 RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~  100 (187)
T COG0742          23 RPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKENLKALGLEGEARVLRN  100 (187)
T ss_pred             CCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhCCccceEEEee
Confidence            45566677777777777 4788999999999999999888753  47999999999999999999999998888999999


Q ss_pred             chhHHHHHHHhcccCCCCeeEEEEcCCcc--chHHHHHHHH----hccCCCeEEEEecc
Q 026461          130 EALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLM----KLLKVGGIAVYDNT  182 (238)
Q Consensus       130 d~~~~l~~~~~~~~~~~~fD~V~~d~~~~--~~~~~~~~~~----~~L~~gG~lv~~~~  182 (238)
                      |+...++.+..    .++||+||+|.+-.  ........+.    .+|+|+|.++++.-
T Consensus       101 da~~~L~~~~~----~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~  155 (187)
T COG0742         101 DALRALKQLGT----REPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD  155 (187)
T ss_pred             cHHHHHHhcCC----CCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence            99988777632    24599999998644  2222222222    67999999999743

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.27  E-value=3.2e-11  Score=94.12  Aligned_cols=106  Identities=19%  Similarity=0.308  Sum_probs=80.9

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEE-EEecchhHHHHHHHhccc
Q 026461           65 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKIN-FIESEALSVLDQLLKYSE  143 (238)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~l~~~~~~~~  143 (238)
                      ++.......|||+|||+|.+-.+.--  .+..+||++|+++.+-+.+.+.++..-. .++. |++++.++. ++++    
T Consensus        71 ~~gk~~K~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~l-~~l~----  142 (252)
T KOG4300|consen   71 FLGKSGKGDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGENL-PQLA----  142 (252)
T ss_pred             HhcccCccceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhcC-cccc----
Confidence            33333444689999999998433321  1478999999999999999998888754 3455 888887654 4442    


Q ss_pred             CCCCeeEEEEc---CCccchHHHHHHHHhccCCCeEEEE
Q 026461          144 NEGSFDYAFVD---ADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       144 ~~~~fD~V~~d---~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                       +++||.|+.-   +..++..+.+.++.++|+|||.+++
T Consensus       143 -d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iif  180 (252)
T KOG4300|consen  143 -DGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIF  180 (252)
T ss_pred             -cCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEE
Confidence             6899999753   5677888999999999999999887

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.27  E-value=1.3e-10  Score=94.54  Aligned_cols=107  Identities=17%  Similarity=0.173  Sum_probs=78.4

Q ss_pred             HHHHHHHh--hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHH
Q 026461           60 QLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ  137 (238)
Q Consensus        60 ~~l~~l~~--~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~  137 (238)
                      .++..+..  ..++.+|||+|||+|..+..++..   ..+|+++|+++.+++.|++++...+..+++++..+|..    .
T Consensus        51 ~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~----~  123 (230)
T PRK07580         51 TVLSWLPADGDLTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE----S  123 (230)
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch----h
Confidence            34444433  345679999999999999999875   35799999999999999999988877678999998832    1


Q ss_pred             HHhcccCCCCeeEEEEcCCc-----cchHHHHHHHHhccCCCeEEEE
Q 026461          138 LLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       138 ~~~~~~~~~~fD~V~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      .      .++||+|++....     ......++.+.+.+++++++.+
T Consensus       124 ~------~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~  164 (230)
T PRK07580        124 L------LGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTF  164 (230)
T ss_pred             c------cCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence            1      4789999976432     2334566666666655555444

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=99.26  E-value=3.8e-10  Score=94.81  Aligned_cols=151  Identities=23%  Similarity=0.300  Sum_probs=114.6

Q ss_pred             ccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461           52 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA  131 (238)
Q Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (238)
                      ..++.....+...++...+...|||++++.|+-|.++++.+...+.|++.|+++..+...++++.+.|..+ +.....|+
T Consensus        67 ~~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~  145 (283)
T PF01189_consen   67 FYVQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADA  145 (283)
T ss_dssp             EEEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHH
T ss_pred             EEecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeecc
Confidence            44566667777777777788899999999999999999999878999999999999999999999999854 88887888


Q ss_pred             hHHHHHHHhcccCCCCeeEEEEcCCccch-------------------------HHHHHHHHhcc----CCCeEEEEecc
Q 026461          132 LSVLDQLLKYSENEGSFDYAFVDADKDNY-------------------------CNYHERLMKLL----KVGGIAVYDNT  182 (238)
Q Consensus       132 ~~~l~~~~~~~~~~~~fD~V~~d~~~~~~-------------------------~~~~~~~~~~L----~~gG~lv~~~~  182 (238)
                      ....+...     ...||.|++|++++..                         ...++.+.+++    +|||.+|...+
T Consensus       146 ~~~~~~~~-----~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC  220 (283)
T PF01189_consen  146 RKLDPKKP-----ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC  220 (283)
T ss_dssp             HHHHHHHH-----TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred             cccccccc-----ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence            88765542     3469999999754321                         35677778999    99999997765


Q ss_pred             ccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEee
Q 026461          183 LWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHV  225 (238)
Q Consensus       183 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  225 (238)
                      ..     .++++         ...++.|   +.++|+++.+-+
T Consensus       221 S~-----~~eEN---------E~vV~~f---l~~~~~~~l~~~  246 (283)
T PF01189_consen  221 SL-----SPEEN---------EEVVEKF---LKRHPDFELVPI  246 (283)
T ss_dssp             HH-----HGGGT---------HHHHHHH---HHHSTSEEEECC
T ss_pred             cH-----HHHHH---------HHHHHHH---HHhCCCcEEEec
Confidence            53     23332         2335555   556777766543

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.25  E-value=1.8e-10  Score=93.39  Aligned_cols=103  Identities=20%  Similarity=0.217  Sum_probs=83.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      ++.+|||+|||+|..+..++..   ..+++++|+++.+++.+++++...+.. ++++..+|+.+.....      .++||
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~------~~~~D  114 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKG------AKSFD  114 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCC------CCCcc
Confidence            4779999999999999988875   347999999999999999998876653 5888888887664321      37899


Q ss_pred             EEEEcC---CccchHHHHHHHHhccCCCeEEEEecc
Q 026461          150 YAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       150 ~V~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      +|++..   .......+++.+.+.|++||.+++...
T Consensus       115 ~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~  150 (224)
T TIGR01983       115 VVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI  150 (224)
T ss_pred             EEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence            999864   344567788999999999999888653

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.25  E-value=1.3e-10  Score=81.31  Aligned_cols=99  Identities=20%  Similarity=0.333  Sum_probs=78.6

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEE
Q 026461           73 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  152 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~  152 (238)
                      +++|+|||.|..+..++. . ...+++++|+++..+..+++..... ...+++++.+|..+.....      .++||+|+
T Consensus         1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~d~i~   71 (107)
T cd02440           1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPEA------DESFDVII   71 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhcccc------CCceEEEE
Confidence            489999999999999988 3 3689999999999999888644333 3356899999988765411      47899999


Q ss_pred             EcCCcc----chHHHHHHHHhccCCCeEEEEe
Q 026461          153 VDADKD----NYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       153 ~d~~~~----~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ++....    ....+++.+.+.+++||.+++.
T Consensus        72 ~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          72 SDPPLHHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             EccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence            986533    4577888888999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.24  E-value=2.6e-11  Score=92.86  Aligned_cols=122  Identities=22%  Similarity=0.324  Sum_probs=91.8

Q ss_pred             cHhHHHHHHHHHhh-------cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEE
Q 026461           55 APDAGQLMAMLLRL-------VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI  127 (238)
Q Consensus        55 ~~~~~~~l~~l~~~-------~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~  127 (238)
                      +.....++..|...       .++.+|||+|||.|.....|++.-- .+.++|+|.++.+++.|+...++.++++.|+|.
T Consensus        45 ~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~  123 (227)
T KOG1271|consen   45 EDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQ  123 (227)
T ss_pred             CcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcCCCcceeEE
Confidence            34445555555432       2345999999999999999997532 466999999999999999999999999889999


Q ss_pred             ecchhHHHHHHHhcccCCCCeeEEEE----cC-------CccchHHHHHHHHhccCCCeEEEEecccc
Q 026461          128 ESEALSVLDQLLKYSENEGSFDYAFV----DA-------DKDNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       128 ~~d~~~~l~~~~~~~~~~~~fD~V~~----d~-------~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      +.|+.+.  .     +..++||+|.=    |+       ......-|+..+.++|+|||++++-.+-|
T Consensus       124 q~DI~~~--~-----~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~  184 (227)
T KOG1271|consen  124 QLDITDP--D-----FLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF  184 (227)
T ss_pred             EeeccCC--c-----ccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence            9998764  1     12578888862    21       12223567888889999999999977765

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.23  E-value=1.4e-10  Score=90.20  Aligned_cols=104  Identities=12%  Similarity=-0.011  Sum_probs=80.2

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..+..+|||||||+|..+..+++.   ..+|+++|+++.+++.+++++..   .++++++++|+.+....       ..+
T Consensus        11 ~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~-------~~~   77 (169)
T smart00650       11 LRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLP-------KLQ   77 (169)
T ss_pred             CCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCcc-------ccC
Confidence            445678999999999999999986   46999999999999999998854   24799999999876321       346


Q ss_pred             eeEEEEcCCccchHHHHHHHHh--ccCCCeEEEEecccc
Q 026461          148 FDYAFVDADKDNYCNYHERLMK--LLKVGGIAVYDNTLW  184 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~~~--~L~~gG~lv~~~~~~  184 (238)
                      ||.|+.+.+.......+..+..  .+.++|++++..-..
T Consensus        78 ~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~a  116 (169)
T smart00650       78 PYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVA  116 (169)
T ss_pred             CCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHHh
Confidence            9999998765554566666654  345888998876443

>PRK06202 hypothetical protein; Provisional

Probab=99.23  E-value=5.4e-11  Score=97.27  Aligned_cols=115  Identities=12%  Similarity=0.070  Sum_probs=78.9

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCC---CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH
Q 026461           58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP---EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV  134 (238)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (238)
                      ...++...+...++.+|||+|||+|..+..+++..+   +..+|+++|+++++++.|++.....    ++++...++...
T Consensus        48 ~~~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l  123 (232)
T PRK06202         48 YRRLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDEL  123 (232)
T ss_pred             HHHHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccc
Confidence            344444444445677999999999999999886542   2459999999999999998875432    355555554332


Q ss_pred             HHHHHhcccCCCCeeEEEEcCCccc-----hHHHHHHHHhccCCCeEEEEeccccC
Q 026461          135 LDQLLKYSENEGSFDYAFVDADKDN-----YCNYHERLMKLLKVGGIAVYDNTLWG  185 (238)
Q Consensus       135 l~~~~~~~~~~~~fD~V~~d~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~~  185 (238)
                       +.      ..++||+|++....++     ...+++++.+.++  |.+++.+...+
T Consensus       124 -~~------~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~  170 (232)
T PRK06202        124 -VA------EGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS  170 (232)
T ss_pred             -cc------cCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence             11      1479999998754332     3457888888887  66666665543

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.23  E-value=1.8e-10  Score=91.21  Aligned_cols=107  Identities=15%  Similarity=0.216  Sum_probs=75.3

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHH
Q 026461           61 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQL  138 (238)
Q Consensus        61 ~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~  138 (238)
                      +...+....++.+|||+|||+|..+..++....+.++|+++|+++..           .. .+++++++|+.+.  ++.+
T Consensus        23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l   90 (188)
T TIGR00438        23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKI   90 (188)
T ss_pred             HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHH
Confidence            33334445677899999999999999999887556799999999864           11 3478888887542  1111


Q ss_pred             HhcccCCCCeeEEEEcCCcc-------c-------hHHHHHHHHhccCCCeEEEEe
Q 026461          139 LKYSENEGSFDYAFVDADKD-------N-------YCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       139 ~~~~~~~~~fD~V~~d~~~~-------~-------~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ... ...++||+|+++..+.       .       ....+..+.+.|+|||.+++.
T Consensus        91 ~~~-~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~  145 (188)
T TIGR00438        91 RER-VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK  145 (188)
T ss_pred             HHH-hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence            110 1246899999975311       1       246788889999999999985

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.21  E-value=1.8e-10  Score=93.64  Aligned_cols=122  Identities=16%  Similarity=0.283  Sum_probs=92.3

Q ss_pred             CcHhHHHHHHHHHhh------cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEE
Q 026461           54 TAPDAGQLMAMLLRL------VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI  127 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~------~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~  127 (238)
                      ..+++++++...+..      ..+..+||+|||+|..++.++..++ .++|+++|.++.++..|.+|+.++++.+++.++
T Consensus       126 PRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~  204 (328)
T KOG2904|consen  126 PRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVI  204 (328)
T ss_pred             cCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEE
Confidence            445666666655442      2345799999999999999999999 999999999999999999999999999999888


Q ss_pred             ec----chhHHHHHHHhcccCCCCeeEEEEcCCc--------------------------cc---hHHHHHHHHhccCCC
Q 026461          128 ES----EALSVLDQLLKYSENEGSFDYAFVDADK--------------------------DN---YCNYHERLMKLLKVG  174 (238)
Q Consensus       128 ~~----d~~~~l~~~~~~~~~~~~fD~V~~d~~~--------------------------~~---~~~~~~~~~~~L~~g  174 (238)
                      +-    |..+..+.      ..+++|+++.+.+-                          ..   +..++..+.++|+||
T Consensus       205 ~~~me~d~~~~~~l------~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~g  278 (328)
T KOG2904|consen  205 HNIMESDASDEHPL------LEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPG  278 (328)
T ss_pred             eccccccccccccc------ccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccC
Confidence            54    33333222      25899999876320                          11   134555666999999


Q ss_pred             eEEEEecc
Q 026461          175 GIAVYDNT  182 (238)
Q Consensus       175 G~lv~~~~  182 (238)
                      |.+.++-.
T Consensus       279 g~~~le~~  286 (328)
T KOG2904|consen  279 GFEQLELV  286 (328)
T ss_pred             CeEEEEec
Confidence            99998754

>PHA03411 putative methyltransferase; Provisional

Probab=99.20  E-value=6.1e-10  Score=91.92  Aligned_cols=115  Identities=12%  Similarity=0.108  Sum_probs=80.5

Q ss_pred             CCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe
Q 026461           49 WAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE  128 (238)
Q Consensus        49 ~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~  128 (238)
                      .+...........+  ........+|||+|||+|..++.++...+ ..+|+++|+++.+++.+++++      .++++++
T Consensus        45 ~G~FfTP~~i~~~f--~~~~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~------~~v~~v~  115 (279)
T PHA03411         45 SGAFFTPEGLAWDF--TIDAHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL------PEAEWIT  115 (279)
T ss_pred             ceeEcCCHHHHHHH--HhccccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC------cCCEEEE
Confidence            44444444443222  12333457999999999999999888654 579999999999999998863      3588999


Q ss_pred             cchhHHHHHHHhcccCCCCeeEEEEcCCccc-----------------------hHHHHHHHHhccCCCeEEEEe
Q 026461          129 SEALSVLDQLLKYSENEGSFDYAFVDADKDN-----------------------YCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       129 ~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~-----------------------~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      +|+.+...        ..+||+|+++.+...                       ...++..+..+|+|+|.+.+-
T Consensus       116 ~D~~e~~~--------~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~  182 (279)
T PHA03411        116 SDVFEFES--------NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA  182 (279)
T ss_pred             Cchhhhcc--------cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence            99887632        368999999753211                       134455556788998866553

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.20  E-value=3.2e-11  Score=95.70  Aligned_cols=140  Identities=15%  Similarity=0.160  Sum_probs=92.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      ...+.||+|+|.|..|..++..+  ..+|..+|..+..++.|++++...+ ....++++.-..++.|.       .+.||
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~-------~~~YD  124 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPE-------EGKYD  124 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG-----------TT-EE
T ss_pred             CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCC-------CCcEe
Confidence            45689999999999999887543  4699999999999999998875421 23357788777777654       47999


Q ss_pred             EEEEcC-----CccchHHHHHHHHhccCCCeEEEE-eccccCcc-ccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeE
Q 026461          150 YAFVDA-----DKDNYCNYHERLMKLLKVGGIAVY-DNTLWGGT-VAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQL  222 (238)
Q Consensus       150 ~V~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~-~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  222 (238)
                      +||+--     ...+...+++.+...|+|+|+||+ +|+...|. +.++++.  .-.|      ..+....|.+..++.+
T Consensus       125 lIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~Ds--SvTR------s~~~~~~lF~~AGl~~  196 (218)
T PF05891_consen  125 LIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDS--SVTR------SDEHFRELFKQAGLRL  196 (218)
T ss_dssp             EEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTT--EEEE------EHHHHHHHHHHCT-EE
T ss_pred             EEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccC--eeec------CHHHHHHHHHHcCCEE
Confidence            999853     234567899999999999999988 55666664 5665544  1233      3444455566677776


Q ss_pred             Eeeec
Q 026461          223 SHVAL  227 (238)
Q Consensus       223 ~~lp~  227 (238)
                      +.--.
T Consensus       197 v~~~~  201 (218)
T PF05891_consen  197 VKEEK  201 (218)
T ss_dssp             EEEEE
T ss_pred             EEecc
Confidence            65433

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=99.19  E-value=1.9e-10  Score=90.92  Aligned_cols=162  Identities=17%  Similarity=0.247  Sum_probs=91.7

Q ss_pred             cHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhh---CCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461           55 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALT---IPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA  131 (238)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~---~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (238)
                      .|...-.++.++-..+|+.|+|+|+..|++++++|+.   +...++|++||++.....  ++.++..++.++|++++||.
T Consensus        17 ~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~~rI~~i~Gds   94 (206)
T PF04989_consen   17 YPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMSPRITFIQGDS   94 (206)
T ss_dssp             -HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-S
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccccCceEEEECCC
Confidence            4555666777777889999999999999999998764   334789999999755332  22333456668999999998


Q ss_pred             hHH--HHHHHhcccCCCCeeEEEEcCC--ccchHHHHHHHHhccCCCeEEEEeccccCccccC--CCCCCCCCcccchHH
Q 026461          132 LSV--LDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAV--PEEQVPDHFRGSSRQ  205 (238)
Q Consensus       132 ~~~--l~~~~~~~~~~~~fD~V~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~--~~~~~~~~~~~~~~~  205 (238)
                      .+.  +.....- -......+|+.|+.  ..+...-++.+.+++++|+++|+.|..+......  +..++...     ..
T Consensus        95 ~d~~~~~~v~~~-~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~g-----~~  168 (206)
T PF04989_consen   95 IDPEIVDQVREL-ASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGPG-----NN  168 (206)
T ss_dssp             SSTHHHHTSGSS-----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS-----------------
T ss_pred             CCHHHHHHHHHh-hccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccccchhhh-----hH
Confidence            653  2221100 11346668888864  4567777888899999999999988875443322  11222111     11


Q ss_pred             HHHHHHHHhhcCCCeeEEe
Q 026461          206 AILDLNRSLADDPRVQLSH  224 (238)
Q Consensus       206 ~~~~~~~~l~~~~~~~~~~  224 (238)
                      -..+..++|.++++|+...
T Consensus       169 p~~av~~fL~~~~~f~iD~  187 (206)
T PF04989_consen  169 PKTAVKEFLAEHPDFEIDT  187 (206)
T ss_dssp             -HHHHHHHHHTTTTEEEET
T ss_pred             HHHHHHHHHHHCCCcEecc
Confidence            1667777899999976653

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.17  E-value=9.5e-10  Score=95.95  Aligned_cols=100  Identities=17%  Similarity=0.239  Sum_probs=84.7

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeE
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  150 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~  150 (238)
                      ..+|||++||+|..++.++...+ ..+|+++|+++.+++.+++|++.+++. ++++.++|+.+.+..       .+.||+
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~-------~~~fD~  128 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHE-------ERKFDV  128 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhh-------cCCCCE
Confidence            35899999999999999988665 468999999999999999999998875 478999999877653       257999


Q ss_pred             EEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          151 AFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       151 V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      |++|.. .....+++.+...+++||+|.+.
T Consensus       129 V~lDP~-Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        129 VDIDPF-GSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             EEECCC-CCcHHHHHHHHHHhcCCCEEEEE
Confidence            999974 44467888878889999999995

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.17  E-value=7.3e-10  Score=86.52  Aligned_cols=108  Identities=23%  Similarity=0.295  Sum_probs=72.7

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC--CCCcEEEEecchhHHH-HHHHhcccC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--VDHKINFIESEALSVL-DQLLKYSEN  144 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~l-~~~~~~~~~  144 (238)
                      ..++++|||+|||+|..++.++...+ ..+|+..|.++ .++..+.|++.++  ...++.+...+-.+.. +...    .
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~----~  116 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL----E  116 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH----S
T ss_pred             hcCCceEEEECCccchhHHHHHhccC-CceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc----c
Confidence            56788999999999999999998754 67999999988 9999999999876  4567888777654422 2221    1


Q ss_pred             CCCeeEEEEcC---CccchHHHHHHHHhccCCCeEEEEec
Q 026461          145 EGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       145 ~~~fD~V~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ..+||+|+...   ....++.+++.+..+|+++|.+++..
T Consensus       117 ~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~  156 (173)
T PF10294_consen  117 PHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAY  156 (173)
T ss_dssp             -SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred             cccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            46899998643   35667888899999999988766653

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK05785 hypothetical protein; Provisional

Probab=99.16  E-value=4.6e-10  Score=91.41  Aligned_cols=98  Identities=13%  Similarity=0.128  Sum_probs=73.5

Q ss_pred             HHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHH
Q 026461           60 QLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL  138 (238)
Q Consensus        60 ~~l~~l~~~-~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~  138 (238)
                      .++..+... .++.+|||+|||+|..+..+++..  +.+|+|+|+++++++.|++.         ..++++|+.+. +  
T Consensus        40 ~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~l-p--  105 (226)
T PRK05785         40 ELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA---------DDKVVGSFEAL-P--  105 (226)
T ss_pred             HHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc---------cceEEechhhC-C--
Confidence            344444332 347799999999999999999865  46999999999999998763         13467777654 2  


Q ss_pred             HhcccCCCCeeEEEEcCC---ccchHHHHHHHHhccCCCe
Q 026461          139 LKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGG  175 (238)
Q Consensus       139 ~~~~~~~~~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG  175 (238)
                          +.+++||+|++...   ..+....++++.+.|||..
T Consensus       106 ----~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~  141 (226)
T PRK05785        106 ----FRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV  141 (226)
T ss_pred             ----CCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCce
Confidence                23689999998643   3456788999999999953

>PLN02672 methionine S-methyltransferase

Probab=99.16  E-value=6.7e-10  Score=106.79  Aligned_cols=124  Identities=15%  Similarity=0.114  Sum_probs=90.9

Q ss_pred             cCcHhHHHHHHHHHhhc----CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCC--------
Q 026461           53 GTAPDAGQLMAMLLRLV----NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--------  120 (238)
Q Consensus        53 ~~~~~~~~~l~~l~~~~----~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--------  120 (238)
                      ...++...++..+....    ++++|||+|||+|..++.++...+ ..+|+++|+++++++.|++|+..+++        
T Consensus        97 IPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~  175 (1082)
T PLN02672         97 IPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVY  175 (1082)
T ss_pred             cCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCccccccccc
Confidence            34456666666643221    246899999999999999999876 67999999999999999999987643        


Q ss_pred             -------CCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCc------cc----------------------------
Q 026461          121 -------DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK------DN----------------------------  159 (238)
Q Consensus       121 -------~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~------~~----------------------------  159 (238)
                             .++++++++|..+.++..      ..+||+|+.+.+-      ..                            
T Consensus       176 ~~~~~~l~~rV~f~~sDl~~~~~~~------~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~  249 (1082)
T PLN02672        176 DGEGKTLLDRVEFYESDLLGYCRDN------NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVE  249 (1082)
T ss_pred             ccccccccccEEEEECchhhhcccc------CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCC
Confidence                   257999999987765321      2479999986320      00                            


Q ss_pred             -------hHHHHHHHHhccCCCeEEEEeccc
Q 026461          160 -------YCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       160 -------~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                             +...+..+.+.|+|||.++++--.
T Consensus       250 g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~  280 (1082)
T PLN02672        250 DQFGLGLIARAVEEGISVIKPMGIMIFNMGG  280 (1082)
T ss_pred             CCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence                   134455556799999999987443

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=99.15  E-value=1.1e-10  Score=89.29  Aligned_cols=79  Identities=23%  Similarity=0.285  Sum_probs=60.0

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEE
Q 026461           72 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  151 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V  151 (238)
                      ..|+|+.||.|+.++.+|..+.   +|++||+++..++.++.|++-.|..++|+++++|..+.++.+..    ...+|+|
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~----~~~~D~v   73 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS----NKIFDVV   73 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB----------SEE
T ss_pred             CEEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc----cccccEE
Confidence            3699999999999999999754   89999999999999999999999999999999999998765421    1228999


Q ss_pred             EEcCCc
Q 026461          152 FVDADK  157 (238)
Q Consensus       152 ~~d~~~  157 (238)
                      |++.++
T Consensus        74 FlSPPW   79 (163)
T PF09445_consen   74 FLSPPW   79 (163)
T ss_dssp             EE---B
T ss_pred             EECCCC
Confidence            998643

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.15  E-value=1.4e-09  Score=94.58  Aligned_cols=102  Identities=16%  Similarity=0.146  Sum_probs=78.8

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhccc--------
Q 026461           72 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE--------  143 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~--------  143 (238)
                      .++||++||+|..++.++...   .+|+++|+++.+++.+++|+..+++. +++++.+|+.+.++.+.....        
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~  283 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQAMNGVREFNRLKGID  283 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhccccccccccc
Confidence            579999999999999999864   48999999999999999999998885 699999999988776532100        


Q ss_pred             -CCCCeeEEEEcCCccc-hHHHHHHHHhccCCCeEEEEe
Q 026461          144 -NEGSFDYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       144 -~~~~fD~V~~d~~~~~-~~~~~~~~~~~L~~gG~lv~~  180 (238)
                       ...+||+||+|.+... ....++.+.+   +++++.++
T Consensus       284 ~~~~~~D~v~lDPPR~G~~~~~l~~l~~---~~~ivyvS  319 (362)
T PRK05031        284 LKSYNFSTIFVDPPRAGLDDETLKLVQA---YERILYIS  319 (362)
T ss_pred             ccCCCCCEEEECCCCCCCcHHHHHHHHc---cCCEEEEE
Confidence             0125999999987544 3445555543   67777664

>PRK00536 speE spermidine synthase; Provisional

Probab=99.14  E-value=9.8e-10  Score=90.69  Aligned_cols=100  Identities=9%  Similarity=0.065  Sum_probs=79.6

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC--C-CCcEEEEecchhHHHHHHHhccc
Q 026461           67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSE  143 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~l~~~~~~~~  143 (238)
                      ...+|++||-||.|.|..+..++++ +  .+|+.||++++.++.+++++....  + ++|++++..     ..+.     
T Consensus        69 ~h~~pk~VLIiGGGDGg~~REvLkh-~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-----~~~~-----  135 (262)
T PRK00536         69 TKKELKEVLIVDGFDLELAHQLFKY-D--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-----LLDL-----  135 (262)
T ss_pred             hCCCCCeEEEEcCCchHHHHHHHCc-C--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-----hhhc-----
Confidence            3568899999999999999999997 3  399999999999999999776432  2 267887751     2221     


Q ss_pred             CCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ..++||+|++|..  ..+++++.+.+.|+|||+++...
T Consensus       136 ~~~~fDVIIvDs~--~~~~fy~~~~~~L~~~Gi~v~Qs  171 (262)
T PRK00536        136 DIKKYDLIICLQE--PDIHKIDGLKRMLKEDGVFISVA  171 (262)
T ss_pred             cCCcCCEEEEcCC--CChHHHHHHHHhcCCCcEEEECC
Confidence            1378999999964  33788899999999999999864

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.14  E-value=6.4e-10  Score=88.37  Aligned_cols=101  Identities=23%  Similarity=0.285  Sum_probs=78.0

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..+...|+|..||.|+.++.+|...+ ..+|+++|++|.+++..+++++.+++.+++..+++|+.++++        .+.
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--------~~~  169 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP--------EGK  169 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----------TT-
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC--------ccc
Confidence            45678999999999999999998544 678999999999999999999999999999999999998876        379


Q ss_pred             eeEEEEcCCccchHHHHHHHHhccCCCeEEE
Q 026461          148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAV  178 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv  178 (238)
                      +|-|+++.+. ....++..+..++++||++.
T Consensus       170 ~drvim~lp~-~~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  170 FDRVIMNLPE-SSLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             EEEEEE--TS-SGGGGHHHHHHHEEEEEEEE
T ss_pred             cCEEEECChH-HHHHHHHHHHHHhcCCcEEE
Confidence            9999998754 34578888999999999875

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.13  E-value=2.4e-09  Score=82.91  Aligned_cols=89  Identities=17%  Similarity=0.289  Sum_probs=70.7

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ....+.|+|+|||+|..++..+..-  ..+|+|+|+++++++.+++|..+  +..+++|+.+|+.+.          .+.
T Consensus        43 ~l~g~~V~DlG~GTG~La~ga~~lG--a~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~----------~~~  108 (198)
T COG2263          43 DLEGKTVLDLGAGTGILAIGAALLG--ASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDF----------RGK  108 (198)
T ss_pred             CcCCCEEEEcCCCcCHHHHHHHhcC--CcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhc----------CCc
Confidence            3466789999999999998877643  47999999999999999999988  346799999999877          689


Q ss_pred             eeEEEEcCCc-----cchHHHHHHHHhc
Q 026461          148 FDYAFVDADK-----DNYCNYHERLMKL  170 (238)
Q Consensus       148 fD~V~~d~~~-----~~~~~~~~~~~~~  170 (238)
                      +|.++++.+.     +.-..++...++.
T Consensus       109 ~dtvimNPPFG~~~rhaDr~Fl~~Ale~  136 (198)
T COG2263         109 FDTVIMNPPFGSQRRHADRPFLLKALEI  136 (198)
T ss_pred             cceEEECCCCccccccCCHHHHHHHHHh
Confidence            9999998642     2234566655554

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.12  E-value=3.6e-10  Score=90.31  Aligned_cols=111  Identities=21%  Similarity=0.319  Sum_probs=81.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC----------------------------
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG----------------------------  119 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~----------------------------  119 (238)
                      ...++.+|||||.+|..|+.+|+.+. ...|.|+||++..+..|+++++..-                            
T Consensus        56 ~f~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~  134 (288)
T KOG2899|consen   56 WFEPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD  134 (288)
T ss_pred             ccCcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence            34678999999999999999999997 6679999999999999999886421                            


Q ss_pred             ------CCCcEEEEec----chhHHHHHHHhcccCCCCeeEEEEc---------CCccchHHHHHHHHhccCCCeEEEEe
Q 026461          120 ------VDHKINFIES----EALSVLDQLLKYSENEGSFDYAFVD---------ADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       120 ------~~~~v~~~~~----d~~~~l~~~~~~~~~~~~fD~V~~d---------~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                            +.+++.|...    +..+++..      ....||+|++-         ...+....+|..+.++|.|||++|++
T Consensus       135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~------~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE  208 (288)
T KOG2899|consen  135 RAFTTDFPDNVWFQKENYVLESDDFLDM------IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE  208 (288)
T ss_pred             ccccccCCcchhcccccEEEecchhhhh------ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence                  1112222221    12234422      25799999753         23456789999999999999999997


Q ss_pred             ccccC
Q 026461          181 NTLWG  185 (238)
Q Consensus       181 ~~~~~  185 (238)
                      ---|.
T Consensus       209 PQpWk  213 (288)
T KOG2899|consen  209 PQPWK  213 (288)
T ss_pred             CCchH
Confidence            55543

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.12  E-value=1.3e-09  Score=92.61  Aligned_cols=96  Identities=17%  Similarity=0.095  Sum_probs=69.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCC----CCcEEEEecchhHHHHHHHhcccCC
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV----DHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ++.+|||+|||+|..++.+++.   +.+|+++|+++.+++.+++++...+.    ..+++|..+|..+.          .
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----------~  210 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----------S  210 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----------C
Confidence            4679999999999999999974   56999999999999999999876522    13578888886432          4


Q ss_pred             CCeeEEEEcCCccch-----HHHHHHHHhccCCCeEEEE
Q 026461          146 GSFDYAFVDADKDNY-----CNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~-----~~~~~~~~~~L~~gG~lv~  179 (238)
                      ++||+|++.....++     ...+..+. .+.+||+++.
T Consensus       211 ~~fD~Vv~~~vL~H~p~~~~~~ll~~l~-~l~~g~liIs  248 (315)
T PLN02585        211 GKYDTVTCLDVLIHYPQDKADGMIAHLA-SLAEKRLIIS  248 (315)
T ss_pred             CCcCEEEEcCEEEecCHHHHHHHHHHHH-hhcCCEEEEE
Confidence            789999865432222     23445554 3456666654

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=3.5e-10  Score=88.56  Aligned_cols=112  Identities=17%  Similarity=0.223  Sum_probs=85.7

Q ss_pred             HHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCC-CEEEEEeCCchhHHHHHHHHHHcCC---------CCcEEEE
Q 026461           59 GQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPED-GQITAIDVNRETYEIGLPIIKKAGV---------DHKINFI  127 (238)
Q Consensus        59 ~~~l~~l~~-~~~~~~vLeiG~G~G~~t~~la~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~---------~~~v~~~  127 (238)
                      +.++..|-. +.+..+.||+|+|+||.+..++.-+... ...+|||.-++.++.+++++.+.--         ..++.++
T Consensus        70 a~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~iv  149 (237)
T KOG1661|consen   70 ATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIV  149 (237)
T ss_pred             HHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEE
Confidence            455555543 4566799999999999999999655433 4459999999999999999987541         1467889


Q ss_pred             ecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          128 ESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       128 ~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      .+|.....++       ..+||.|++.+..+.   ..+.+...|++||.+++-
T Consensus       150 vGDgr~g~~e-------~a~YDaIhvGAaa~~---~pq~l~dqL~~gGrllip  192 (237)
T KOG1661|consen  150 VGDGRKGYAE-------QAPYDAIHVGAAASE---LPQELLDQLKPGGRLLIP  192 (237)
T ss_pred             eCCccccCCc-------cCCcceEEEccCccc---cHHHHHHhhccCCeEEEe
Confidence            9999887655       489999999875443   345677888999988874

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.09  E-value=3.4e-09  Score=91.84  Aligned_cols=103  Identities=13%  Similarity=0.085  Sum_probs=78.6

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhc-------c-
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY-------S-  142 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~-------~-  142 (238)
                      +.+|||+|||+|..++.++...   .+|+++|+++++++.+++|+..+++. +++++.+|+.++++.....       + 
T Consensus       198 ~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~  273 (353)
T TIGR02143       198 KGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQAMNGVREFRRLKGI  273 (353)
T ss_pred             CCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHHHHhhcccccccccc
Confidence            3579999999999999999875   48999999999999999999999885 5999999998877642110       0 


Q ss_pred             -cCCCCeeEEEEcCCccc-hHHHHHHHHhccCCCeEEEEe
Q 026461          143 -ENEGSFDYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       143 -~~~~~fD~V~~d~~~~~-~~~~~~~~~~~L~~gG~lv~~  180 (238)
                       .....||+||+|.+... ....++.+.+   +++++.++
T Consensus       274 ~~~~~~~d~v~lDPPR~G~~~~~l~~l~~---~~~ivYvs  310 (353)
T TIGR02143       274 DLKSYNCSTIFVDPPRAGLDPDTCKLVQA---YERILYIS  310 (353)
T ss_pred             ccccCCCCEEEECCCCCCCcHHHHHHHHc---CCcEEEEE
Confidence             00124899999987555 3455565543   67877774

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=99.09  E-value=2.3e-09  Score=93.09  Aligned_cols=101  Identities=15%  Similarity=0.117  Sum_probs=87.2

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEE
Q 026461           72 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  151 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V  151 (238)
                      .+|||+.||+|..++.++...+...+|+++|+++++++.+++|++.++.. +++++++|+...+...      ...||+|
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~------~~~fDvI  118 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYR------NRKFHVI  118 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHh------CCCCCEE
Confidence            48999999999999999986543468999999999999999999988875 5899999999988764      4689999


Q ss_pred             EEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          152 FVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       152 ~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ++|. .....++++.+.+.+++||+|.+.
T Consensus       119 dlDP-fGs~~~fld~al~~~~~~glL~vT  146 (374)
T TIGR00308       119 DIDP-FGTPAPFVDSAIQASAERGLLLVT  146 (374)
T ss_pred             EeCC-CCCcHHHHHHHHHhcccCCEEEEE
Confidence            9998 444468999999999999999885

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.09  E-value=6.7e-10  Score=89.73  Aligned_cols=128  Identities=18%  Similarity=0.264  Sum_probs=88.8

Q ss_pred             CCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHH-cC------
Q 026461           47 HPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK-AG------  119 (238)
Q Consensus        47 ~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~~------  119 (238)
                      .+|......+...+++.. ....++.+||..|||.|+-..+||+.   +.+|+|+|+++.+++.+.+.... ..      
T Consensus        15 ~~w~~~~~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~   90 (218)
T PF05724_consen   15 TPWDQGEPNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGG   90 (218)
T ss_dssp             -TT--TTSTHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTT
T ss_pred             CCCCCCCCCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccc
Confidence            345555567777777776 34556679999999999999999985   56999999999999988432211 00      


Q ss_pred             ----CCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEc-----CCccchHHHHHHHHhccCCCeEEEEecccc
Q 026461          120 ----VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       120 ----~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                          -..+|++.++|..++-+..      .++||+|+=.     .++.....+.+.+.++|+|||.+++-.+.+
T Consensus        91 ~~~~~~~~i~~~~gDfF~l~~~~------~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~  158 (218)
T PF05724_consen   91 FKRYQAGRITIYCGDFFELPPED------VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEY  158 (218)
T ss_dssp             EEEETTSSEEEEES-TTTGGGSC------HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES
T ss_pred             eeeecCCceEEEEcccccCChhh------cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEc
Confidence                1246899999998864322      3689999843     245566789999999999999954433433

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.06  E-value=1.7e-09  Score=85.51  Aligned_cols=130  Identities=16%  Similarity=0.130  Sum_probs=91.1

Q ss_pred             cHhHHHHHHHHHhhc-CCC-EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           55 APDAGQLMAMLLRLV-NAK-KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        55 ~~~~~~~l~~l~~~~-~~~-~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      ++....++..|.+.. ... +|||||||+|-.+.+++..+| ..+....|+++......+.++...++.+-..-+..|+.
T Consensus         8 eRNk~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~   86 (204)
T PF06080_consen    8 ERNKDPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVS   86 (204)
T ss_pred             hhCHhHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecC
Confidence            344455555555432 334 499999999999999999998 78899999999998889999988887542233444444


Q ss_pred             HH-HHHHHhcccCCCCeeEEEEcC-----CccchHHHHHHHHhccCCCeEEEEeccccC
Q 026461          133 SV-LDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLWG  185 (238)
Q Consensus       133 ~~-l~~~~~~~~~~~~fD~V~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  185 (238)
                      +. .+.........++||.||+-.     .......+|+.+.++|++||.+++-..+..
T Consensus        87 ~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~  145 (204)
T PF06080_consen   87 APPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNR  145 (204)
T ss_pred             CCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCccc
Confidence            32 111100001246999999753     344557788999999999999999776543

The function of this family is unknown.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.05  E-value=9.9e-10  Score=85.66  Aligned_cols=104  Identities=13%  Similarity=0.222  Sum_probs=77.0

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHh
Q 026461           61 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK  140 (238)
Q Consensus        61 ~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~  140 (238)
                      ++..++  .+..+|||+|||.|....+|.+.  .+.+..|+|++++.+..+.++        .+.++++|+.+.+..+  
T Consensus         6 ~I~~~I--~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r--------Gv~Viq~Dld~gL~~f--   71 (193)
T PF07021_consen    6 IIAEWI--EPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR--------GVSVIQGDLDEGLADF--   71 (193)
T ss_pred             HHHHHc--CCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc--------CCCEEECCHHHhHhhC--
Confidence            344444  35689999999999999888885  268899999999988777653        3789999999988876  


Q ss_pred             cccCCCCeeEEEEcCCccch---HHHHHHHHhccCCCeEEEEecc
Q 026461          141 YSENEGSFDYAFVDADKDNY---CNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       141 ~~~~~~~fD~V~~d~~~~~~---~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                         ++++||.|++....+..   ...++++.+.-+ .+++.+.|.
T Consensus        72 ---~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr-~~IVsFPNF  112 (193)
T PF07021_consen   72 ---PDQSFDYVILSQTLQAVRRPDEVLEEMLRVGR-RAIVSFPNF  112 (193)
T ss_pred             ---CCCCccEEehHhHHHhHhHHHHHHHHHHHhcC-eEEEEecCh
Confidence               47899999998755444   344455544322 367777664

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.05  E-value=4.4e-10  Score=89.16  Aligned_cols=145  Identities=17%  Similarity=0.198  Sum_probs=98.8

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeE
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  150 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~  150 (238)
                      -+++||+|||+|..+..+-...   .+++|+|+|..|++.|.+.    |+-  -.+.++++..+++..     ..+.||+
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK----g~Y--D~L~~Aea~~Fl~~~-----~~er~DL  191 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK----GLY--DTLYVAEAVLFLEDL-----TQERFDL  191 (287)
T ss_pred             cceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc----cch--HHHHHHHHHHHhhhc-----cCCcccc
Confidence            4699999999999998887653   4899999999999998764    321  245667776666543     3689999


Q ss_pred             EEEcC---CccchHHHHHHHHhccCCCeEEEEeccc---cCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEe
Q 026461          151 AFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTL---WGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSH  224 (238)
Q Consensus       151 V~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  224 (238)
                      |..-.   .......++-.+..+|+|||.+.|+-=.   +.+.+..|.      -|+   .+-+.|.+.+....+++++-
T Consensus       192 i~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps------~Ry---AH~~~YVr~~l~~~Gl~~i~  262 (287)
T COG4976         192 IVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPS------QRY---AHSESYVRALLAASGLEVIA  262 (287)
T ss_pred             hhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchh------hhh---ccchHHHHHHHHhcCceEEE
Confidence            98643   2345567777888999999999985322   222112221      111   22455666666667777653


Q ss_pred             e-----------ecCCeeEEEEEcC
Q 026461          225 V-----------ALGDGITICRRIF  238 (238)
Q Consensus       225 l-----------p~~~G~~i~~~~~  238 (238)
                      +           |+..++.|+||+.
T Consensus       263 ~~~ttiR~d~g~pv~G~L~iark~~  287 (287)
T COG4976         263 IEDTTIRRDAGEPVPGILVIARKKA  287 (287)
T ss_pred             eecccchhhcCCCCCCceEEEecCC
Confidence            3           7778888888864

>PHA03412 putative methyltransferase; Provisional

Probab=99.05  E-value=3.3e-09  Score=85.76  Aligned_cols=117  Identities=14%  Similarity=0.219  Sum_probs=81.4

Q ss_pred             CCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEE
Q 026461           50 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI  127 (238)
Q Consensus        50 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~  127 (238)
                      +........+..+..  ....+.+|||+|||+|..++.++..++  +..+|+++|+++.+++.|++++      .++.++
T Consensus        31 GqFfTP~~iAr~~~i--~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~------~~~~~~  102 (241)
T PHA03412         31 GAFFTPIGLARDFTI--DACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV------PEATWI  102 (241)
T ss_pred             CccCCCHHHHHHHHH--hccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc------cCCEEE
Confidence            333444555554432  223467999999999999999988653  2569999999999999999875      247889


Q ss_pred             ecchhHHHHHHHhcccCCCCeeEEEEcCCcc-----c----------hHHHHHHHHhccCCCeEEEEecc
Q 026461          128 ESEALSVLDQLLKYSENEGSFDYAFVDADKD-----N----------YCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       128 ~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~-----~----------~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      .+|+....  +      .++||+|+.+.+-.     +          ...++..+.+++++|+.|+-.+.
T Consensus       103 ~~D~~~~~--~------~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~  164 (241)
T PHA03412        103 NADALTTE--F------DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMS  164 (241)
T ss_pred             Ecchhccc--c------cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCccc
Confidence            99886531  2      36899999875311     1          23467777787888776444433

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.03  E-value=8.2e-09  Score=87.06  Aligned_cols=93  Identities=16%  Similarity=0.134  Sum_probs=74.3

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      +++.....+...+...+..+|||||||+|..|..++..   ..+|+++|+++.+++.+++++...+..++++++++|+.+
T Consensus        20 ~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~   96 (294)
T PTZ00338         20 KNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALK   96 (294)
T ss_pred             CCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhh
Confidence            45555555555555667789999999999999999985   458999999999999999999877756789999999977


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCcc
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKD  158 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~  158 (238)
                      .  .       ...||.|+.+.+..
T Consensus        97 ~--~-------~~~~d~VvaNlPY~  112 (294)
T PTZ00338         97 T--E-------FPYFDVCVANVPYQ  112 (294)
T ss_pred             h--c-------ccccCEEEecCCcc
Confidence            5  1       25789999876543

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=3.2e-09  Score=86.26  Aligned_cols=112  Identities=17%  Similarity=0.241  Sum_probs=87.3

Q ss_pred             HhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHH
Q 026461           56 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL  135 (238)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l  135 (238)
                      +..+ ++-.++...++.+|+|-|+|+|..+.++++...+.++++.+|+.....+.|.+.++..++.+++++.+-|+... 
T Consensus        92 ~Dia-~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~-  169 (314)
T KOG2915|consen   92 PDIA-MILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGS-  169 (314)
T ss_pred             ccHH-HHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccC-
Confidence            4444 44455678889999999999999999999999889999999999999999999999999999999999887653 


Q ss_pred             HHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCe
Q 026461          136 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGG  175 (238)
Q Consensus       136 ~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG  175 (238)
                       .+..   ....+|.||+|.+.++  ..+..+++.|+.+|
T Consensus       170 -GF~~---ks~~aDaVFLDlPaPw--~AiPha~~~lk~~g  203 (314)
T KOG2915|consen  170 -GFLI---KSLKADAVFLDLPAPW--EAIPHAAKILKDEG  203 (314)
T ss_pred             -Cccc---cccccceEEEcCCChh--hhhhhhHHHhhhcC
Confidence             1111   1479999999964322  22233445666655

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.01  E-value=9.9e-09  Score=90.67  Aligned_cols=122  Identities=16%  Similarity=0.163  Sum_probs=94.6

Q ss_pred             CCccCcHhHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEE
Q 026461           50 AMMGTAPDAGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKIN  125 (238)
Q Consensus        50 ~~~~~~~~~~~~l~~l~~----~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~  125 (238)
                      .+....+...+.|...+.    ..+..++||+-||.|..++.+|..   ..+|+|+|+++++++.|++|++.++..+ ++
T Consensus       269 sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~  344 (432)
T COG2265         269 SFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDN-VE  344 (432)
T ss_pred             CceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCc-EE
Confidence            344455666555555433    335568999999999999999965   4699999999999999999999999977 99


Q ss_pred             EEecchhHHHHHHHhcccCCCCeeEEEEcCCccchH-HHHHHHHhccCCCeEEEEe
Q 026461          126 FIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC-NYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       126 ~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~-~~~~~~~~~L~~gG~lv~~  180 (238)
                      |..+++.++.+...    ....+|.|++|.+..... .+++.+ ..++|..++.++
T Consensus       345 f~~~~ae~~~~~~~----~~~~~d~VvvDPPR~G~~~~~lk~l-~~~~p~~IvYVS  395 (432)
T COG2265         345 FIAGDAEEFTPAWW----EGYKPDVVVVDPPRAGADREVLKQL-AKLKPKRIVYVS  395 (432)
T ss_pred             EEeCCHHHHhhhcc----ccCCCCEEEECCCCCCCCHHHHHHH-HhcCCCcEEEEe
Confidence            99999999877652    135889999998877766 555555 566777776664

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.01  E-value=6.5e-09  Score=84.08  Aligned_cols=131  Identities=8%  Similarity=0.005  Sum_probs=88.4

Q ss_pred             cCCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHH------H--
Q 026461           46 DHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK------K--  117 (238)
Q Consensus        46 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~------~--  117 (238)
                      ..+|......+...+.+..+. ..++.+||..|||.|.-..+||+.   +.+|+|+|+|+.+++.+.+...      .  
T Consensus        20 ~~~f~~~~pnp~L~~~~~~l~-~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~   95 (226)
T PRK13256         20 DVGFCQESPNEFLVKHFSKLN-INDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGN   95 (226)
T ss_pred             CCCCccCCCCHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceeccc
Confidence            334544444454444444332 224579999999999999999985   5689999999999998755210      0  


Q ss_pred             ---cCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcC-----CccchHHHHHHHHhccCCCeEEEEecccc
Q 026461          118 ---AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       118 ---~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                         .-....++++++|..++-+..    ...++||+|+-.+     ++.....+.+.+.++|+|||.+++-...+
T Consensus        96 ~~~~~~~~~i~~~~gD~f~l~~~~----~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~  166 (226)
T PRK13256         96 DYKLYKGDDIEIYVADIFNLPKIA----NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH  166 (226)
T ss_pred             ccceeccCceEEEEccCcCCCccc----cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence               001246899999998862210    0136899987542     34455788999999999999877754433

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=99.00  E-value=4.3e-09  Score=82.66  Aligned_cols=96  Identities=23%  Similarity=0.290  Sum_probs=81.7

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEE
Q 026461           73 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  152 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~  152 (238)
                      +++|||+|.|.-++.++-..| +.+++.+|.....+...+......++. +++++++.+.+  +.      ...+||+|+
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~--~~------~~~~fd~v~  120 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE--PE------YRESFDVVT  120 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH--TT------TTT-EEEEE
T ss_pred             eEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc--cc------cCCCccEEE
Confidence            799999999999999999987 899999999999999999999999996 59999999887  11      268999999


Q ss_pred             EcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          153 VDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       153 ~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      .-+.. ....+++.+.+++++||.+++
T Consensus       121 aRAv~-~l~~l~~~~~~~l~~~G~~l~  146 (184)
T PF02527_consen  121 ARAVA-PLDKLLELARPLLKPGGRLLA  146 (184)
T ss_dssp             EESSS-SHHHHHHHHGGGEEEEEEEEE
T ss_pred             eehhc-CHHHHHHHHHHhcCCCCEEEE
Confidence            98743 567888999999999998886

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.98  E-value=1.7e-08  Score=77.45  Aligned_cols=103  Identities=21%  Similarity=0.214  Sum_probs=81.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      .++.++|||||+|+.+.++++...+...+.++|++|++++...+..+.++.  +++.+..|....+.        .++.|
T Consensus        43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~--------~~~VD  112 (209)
T KOG3191|consen   43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLR--------NESVD  112 (209)
T ss_pred             CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhc--------cCCcc
Confidence            488999999999999999999988789999999999999999888877664  47888888777655        48999


Q ss_pred             EEEEcCCc------c------------------chHHHHHHHHhccCCCeEEEEecc
Q 026461          150 YAFVDADK------D------------------NYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       150 ~V~~d~~~------~------------------~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      +++++.+-      +                  -...++..+-.+|+|.|++.+--+
T Consensus       113 vLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~  169 (209)
T KOG3191|consen  113 VLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL  169 (209)
T ss_pred             EEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence            99887420      0                  023455556678899998887543

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.96  E-value=1.3e-08  Score=77.01  Aligned_cols=119  Identities=18%  Similarity=0.103  Sum_probs=93.4

Q ss_pred             cCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           53 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      .+++..++.+...+....+.-|||+|.|+|..|..++++.-+...++++|.+++.+....+.+      +.++++.||+.
T Consensus        31 PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda~  104 (194)
T COG3963          31 PSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGDAF  104 (194)
T ss_pred             CCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccccchh
Confidence            356667777777777778889999999999999999887655788999999999998887764      34779999998


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcCCc-----cchHHHHHHHHhccCCCeEEEE
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      +.-..+.+.  ....||.|++.-+.     +....+++.+...|..||.++-
T Consensus       105 ~l~~~l~e~--~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq  154 (194)
T COG3963         105 DLRTTLGEH--KGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ  154 (194)
T ss_pred             hHHHHHhhc--CCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence            764334322  46789999987543     3345788889999999998775

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.96  E-value=2.7e-09  Score=84.19  Aligned_cols=98  Identities=19%  Similarity=0.202  Sum_probs=79.1

Q ss_pred             cHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH
Q 026461           55 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV  134 (238)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (238)
                      ++....+........++..|+|.-||.|+.++.++...+   .|++||++|..+.-|+.|++-.|++++|+|++||..++
T Consensus        79 e~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~---~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~  155 (263)
T KOG2730|consen   79 EKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP---YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDL  155 (263)
T ss_pred             HHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC---eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHH
Confidence            333333333344444788999999999999999998755   89999999999999999999999999999999999998


Q ss_pred             HHHHHhcccCCCCeeEEEEcCCcc
Q 026461          135 LDQLLKYSENEGSFDYAFVDADKD  158 (238)
Q Consensus       135 l~~~~~~~~~~~~fD~V~~d~~~~  158 (238)
                      ...+...   ...+|+||...++.
T Consensus       156 ~~~lq~~---K~~~~~vf~sppwg  176 (263)
T KOG2730|consen  156 ASKLKAD---KIKYDCVFLSPPWG  176 (263)
T ss_pred             HHHHhhh---hheeeeeecCCCCC
Confidence            8877543   34588999886543

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.95  E-value=5.5e-09  Score=88.79  Aligned_cols=83  Identities=13%  Similarity=0.252  Sum_probs=65.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc-CCCCcEEEEe-cchhHHHHHHHhcccCCCC
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFIE-SEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~v~~~~-~d~~~~l~~~~~~~~~~~~  147 (238)
                      ...++||||||+|.....++...+ ..+++++|+++.+++.|+++++.+ ++.+++++.. .+..+.+.....   ..+.
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~---~~~~  189 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIH---KNER  189 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccc---cCCc
Confidence            346899999999998888887665 689999999999999999999999 7888898864 444444433211   1468


Q ss_pred             eeEEEEcCC
Q 026461          148 FDYAFVDAD  156 (238)
Q Consensus       148 fD~V~~d~~  156 (238)
                      ||+|+++.+
T Consensus       190 fDlivcNPP  198 (321)
T PRK11727        190 FDATLCNPP  198 (321)
T ss_pred             eEEEEeCCC
Confidence            999999864

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.94  E-value=4.2e-09  Score=86.53  Aligned_cols=103  Identities=16%  Similarity=0.173  Sum_probs=81.2

Q ss_pred             HHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcc
Q 026461           63 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS  142 (238)
Q Consensus        63 ~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~  142 (238)
                      .......+.++|||||.|.|..+..+++..| +.+++.+|. |+.++.+++       .++++++.+|..+.+       
T Consensus        93 ~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~-------  156 (241)
T PF00891_consen   93 LEAFDFSGFKTVVDVGGGSGHFAIALARAYP-NLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPL-------  156 (241)
T ss_dssp             HHHSTTTTSSEEEEET-TTSHHHHHHHHHST-TSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCC-------
T ss_pred             hccccccCccEEEeccCcchHHHHHHHHHCC-CCcceeecc-Hhhhhcccc-------ccccccccccHHhhh-------
Confidence            3334455667999999999999999999998 899999999 888888887       578999999987432       


Q ss_pred             cCCCCeeEEEEcCCccc-----hHHHHHHHHhccCCC--eEEEEecccc
Q 026461          143 ENEGSFDYAFVDADKDN-----YCNYHERLMKLLKVG--GIAVYDNTLW  184 (238)
Q Consensus       143 ~~~~~fD~V~~d~~~~~-----~~~~~~~~~~~L~~g--G~lv~~~~~~  184 (238)
                        +. +|++++....++     ...+++++.+.|+||  |.|++.+.+.
T Consensus       157 --P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~  202 (241)
T PF00891_consen  157 --PV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVL  202 (241)
T ss_dssp             --SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEE
T ss_pred             --cc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeecc
Confidence              23 999998754433     456889999999999  9988888775

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.94  E-value=7.2e-09  Score=87.04  Aligned_cols=92  Identities=12%  Similarity=0.107  Sum_probs=73.3

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHH
Q 026461           59 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL  138 (238)
Q Consensus        59 ~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~  138 (238)
                      .+++..+. ..++..+||++||.|+.|..+++.+++.++|+|+|.++++++.+++.+..   .+++++++++..++...+
T Consensus         9 ~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l   84 (296)
T PRK00050          9 DEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVL   84 (296)
T ss_pred             HHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHH
Confidence            44555443 34567999999999999999999987689999999999999999988755   368999999998876655


Q ss_pred             HhcccCCCCeeEEEEcCCc
Q 026461          139 LKYSENEGSFDYAFVDADK  157 (238)
Q Consensus       139 ~~~~~~~~~fD~V~~d~~~  157 (238)
                      ..   ...++|.|++|.+.
T Consensus        85 ~~---~~~~vDgIl~DLGv  100 (296)
T PRK00050         85 AE---GLGKVDGILLDLGV  100 (296)
T ss_pred             Hc---CCCccCEEEECCCc
Confidence            21   12389999998543

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.94  E-value=3.3e-09  Score=89.36  Aligned_cols=105  Identities=20%  Similarity=0.289  Sum_probs=83.5

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      +.+.+.|||+|||+|..+++.|++-  ..+|+++|.+.-+ +.|++.+..+++.+.|+++++.+.++  .++     .++
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi--~LP-----~eK  127 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI--ELP-----VEK  127 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhC--cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE--ecC-----ccc
Confidence            6688999999999999999999875  5799999997655 99999999999999999999999886  441     389


Q ss_pred             eeEEEEcC--CccchHHHHHHHH----hccCCCeEEEEecc
Q 026461          148 FDYAFVDA--DKDNYCNYHERLM----KLLKVGGIAVYDNT  182 (238)
Q Consensus       148 fD~V~~d~--~~~~~~~~~~~~~----~~L~~gG~lv~~~~  182 (238)
                      .|+|+..-  ..-.+...++.++    +.|+|||++.-+-+
T Consensus       128 VDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a  168 (346)
T KOG1499|consen  128 VDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRA  168 (346)
T ss_pred             eeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccc
Confidence            99998762  1223344555554    68999999876443

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.93  E-value=1.3e-08  Score=90.39  Aligned_cols=103  Identities=16%  Similarity=0.180  Sum_probs=79.8

Q ss_pred             CCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           71 AKKTIEIGVFTGYSLLLTALTI---PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      .+.|+|+|||+|-.....+++.   ....+|++||-++.++...++.+...++.++|+++++|++++  ++      +.+
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v--~l------pek  258 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREV--EL------PEK  258 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTS--CH------SS-
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCC--CC------CCc
Confidence            4689999999999988777654   224799999999999988888888889999999999999987  22      579


Q ss_pred             eeEEEEc-----CCccchHHHHHHHHhccCCCeEEEEec
Q 026461          148 FDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       148 fD~V~~d-----~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      .|+|+.-     +..+..++.+....+.|+|||+++=+.
T Consensus       259 vDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP~~  297 (448)
T PF05185_consen  259 VDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIPSS  297 (448)
T ss_dssp             EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEESSE
T ss_pred             eeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeCcc
Confidence            9999874     234456778888889999999887543

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.92  E-value=1.8e-09  Score=86.41  Aligned_cols=106  Identities=20%  Similarity=0.205  Sum_probs=78.5

Q ss_pred             EEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEE
Q 026461           73 KTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  151 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V  151 (238)
                      +|||||||.|.....+++..+. +-+|.++|.+|.+++..+++-....  +++.-...|....  .+ .++.+.+++|+|
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~--~~-~~~~~~~svD~i  148 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSP--SL-KEPPEEGSVDII  148 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccch--hc-cCCCCcCccceE
Confidence            7999999999999999987762 3789999999999999988754332  3454444444322  11 112346899977


Q ss_pred             EE-----cCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          152 FV-----DADKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       152 ~~-----d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      .+     ...+..+...++++.++|||||.|++-|.-
T Consensus       149 t~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg  185 (264)
T KOG2361|consen  149 TLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYG  185 (264)
T ss_pred             EEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecc
Confidence            43     235677888999999999999999998754

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.92  E-value=5.5e-09  Score=83.07  Aligned_cols=89  Identities=15%  Similarity=0.228  Sum_probs=65.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      ++.+|||+|||+|..+..++...  ...++++|+++++++.+++        .+++++++|+.+.++.+     ..++||
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~--------~~~~~~~~d~~~~l~~~-----~~~sfD   77 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA--------RGVNVIQGDLDEGLEAF-----PDKSFD   77 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH--------cCCeEEEEEhhhccccc-----CCCCcC
Confidence            56799999999999999888653  4578999999999988764        13678888876533222     147899


Q ss_pred             EEEEcCCc---cchHHHHHHHHhccCC
Q 026461          150 YAFVDADK---DNYCNYHERLMKLLKV  173 (238)
Q Consensus       150 ~V~~d~~~---~~~~~~~~~~~~~L~~  173 (238)
                      +|++....   .+....++++.+.+++
T Consensus        78 ~Vi~~~~l~~~~d~~~~l~e~~r~~~~  104 (194)
T TIGR02081        78 YVILSQTLQATRNPEEILDEMLRVGRH  104 (194)
T ss_pred             EEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence            99987543   3445666777666554

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.92  E-value=2.1e-08  Score=83.27  Aligned_cols=90  Identities=16%  Similarity=0.041  Sum_probs=71.1

Q ss_pred             cCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           53 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      .+++.....+...+...+..+|||||||+|..|..+++.   ..+|+++|+++.+++.+++++..   .++++++++|+.
T Consensus        12 l~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~   85 (258)
T PRK14896         12 LIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDAL   85 (258)
T ss_pred             cCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccc
Confidence            356666666666666667789999999999999999986   35899999999999999988754   257999999987


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcCCc
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDADK  157 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~~~  157 (238)
                      +..         ...||.|+.+.+.
T Consensus        86 ~~~---------~~~~d~Vv~NlPy  101 (258)
T PRK14896         86 KVD---------LPEFNKVVSNLPY  101 (258)
T ss_pred             cCC---------chhceEEEEcCCc
Confidence            651         2458999887543

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.90  E-value=2e-08  Score=85.55  Aligned_cols=106  Identities=22%  Similarity=0.220  Sum_probs=92.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ...+..|||.-+|.|+.++.+|..-.  .+|+++|++|.+++..++|++.+++.+.+..+++|+.+..+.+       +.
T Consensus       186 v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~-------~~  256 (341)
T COG2520         186 VKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL-------GV  256 (341)
T ss_pred             hcCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc-------cc
Confidence            44588999999999999999998743  3499999999999999999999999988999999999997764       79


Q ss_pred             eeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      +|-|++..+. ...+++..+..++++||++-+....
T Consensus       257 aDrIim~~p~-~a~~fl~~A~~~~k~~g~iHyy~~~  291 (341)
T COG2520         257 ADRIIMGLPK-SAHEFLPLALELLKDGGIIHYYEFV  291 (341)
T ss_pred             CCEEEeCCCC-cchhhHHHHHHHhhcCcEEEEEecc
Confidence            9999998754 4467788888999999999987766

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.90  E-value=4.4e-08  Score=76.89  Aligned_cols=122  Identities=20%  Similarity=0.207  Sum_probs=88.4

Q ss_pred             ccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCC--------EEEEEeCCchhHHHHHHHHHHcCCCCc
Q 026461           52 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG--------QITAIDVNRETYEIGLPIIKKAGVDHK  123 (238)
Q Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~--------~v~~iD~~~~~~~~a~~~~~~~~~~~~  123 (238)
                      ..+.+..+..+-.++...+...+||--||+|...+..+.......        +++|.|+++++++.+++|+..+++...
T Consensus        10 a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~   89 (179)
T PF01170_consen   10 APLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDY   89 (179)
T ss_dssp             TSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGG
T ss_pred             CCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCc
Confidence            456777888888888777778999999999999988766544222        499999999999999999999999888


Q ss_pred             EEEEecchhHHHHHHHhcccCCCCeeEEEEcCCc-----------cchHHHHHHHHhccCCCeEEEEe
Q 026461          124 INFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----------DNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       124 v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~-----------~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      +.+.+.|+.++.  +     ..+++|.|+.|.+.           ..|..+++.+.+.+++..++++.
T Consensus        90 i~~~~~D~~~l~--~-----~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~  150 (179)
T PF01170_consen   90 IDFIQWDARELP--L-----PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT  150 (179)
T ss_dssp             EEEEE--GGGGG--G-----TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred             eEEEecchhhcc--c-----ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence            999999998874  1     15799999999642           22456677777889996666654

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.90  E-value=4.6e-09  Score=83.00  Aligned_cols=112  Identities=21%  Similarity=0.214  Sum_probs=80.6

Q ss_pred             CcHhHHHHHHHHHhhcC--CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461           54 TAPDAGQLMAMLLRLVN--AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA  131 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~--~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (238)
                      ++.+..+-.-.|+....  +.-|||||||+|.++..+.+.   +..++|+|+|+.+++.|.+.-    +.  -.++.+|.
T Consensus        32 IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~e----~e--gdlil~DM  102 (270)
T KOG1541|consen   32 IQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVERE----LE--GDLILCDM  102 (270)
T ss_pred             ehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHhh----hh--cCeeeeec
Confidence            44555444444555544  678999999999999888763   567999999999999998732    11  25677787


Q ss_pred             hHHHHHHHhcccCCCCeeEEEEcC--------C------ccchHHHHHHHHhccCCCeEEEEe
Q 026461          132 LSVLDQLLKYSENEGSFDYAFVDA--------D------KDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       132 ~~~l~~~~~~~~~~~~fD~V~~d~--------~------~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      -+-+|.      .+++||-+++-.        .      ......||..++.+|++|+..|+.
T Consensus       103 G~Glpf------rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q  159 (270)
T KOG1541|consen  103 GEGLPF------RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ  159 (270)
T ss_pred             CCCCCC------CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence            766653      479999887532        1      122356788899999999988875

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.88  E-value=2.3e-08  Score=90.46  Aligned_cols=103  Identities=18%  Similarity=0.177  Sum_probs=84.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      ....+||||||.|.+++.+|...| +..++|+|+....+..+.+.....++. ++.++..|+..+...+     ..+++|
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~~~~~~-----~~~sv~  419 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDLILNDL-----PNNSLD  419 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHhc-----Cccccc
Confidence            456899999999999999999988 789999999999999998888888874 5888888875554444     257899


Q ss_pred             EEEEc---CCcc--c------hHHHHHHHHhccCCCeEEEE
Q 026461          150 YAFVD---ADKD--N------YCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       150 ~V~~d---~~~~--~------~~~~~~~~~~~L~~gG~lv~  179 (238)
                      .|++.   .|+.  +      .+.+++.+.+.|+|||.+.+
T Consensus       420 ~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~  460 (506)
T PRK01544        420 GIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVF  460 (506)
T ss_pred             EEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEE
Confidence            99885   3321  1      36899999999999998876

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.87  E-value=5.2e-08  Score=77.96  Aligned_cols=98  Identities=21%  Similarity=0.294  Sum_probs=83.5

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC-ee
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS-FD  149 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~-fD  149 (238)
                      +++++|||+|.|.-++.+|-..| +.+|+-+|.....+...+......++. +++++++.+++...+        .. ||
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~--------~~~~D  137 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQE--------KKQYD  137 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccc--------cccCc
Confidence            68999999999999999997776 777999999999999999999999985 499999999887432        23 99


Q ss_pred             EEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          150 YAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       150 ~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      +|.+.+. .....+.+.+.+++++||.+++
T Consensus       138 ~vtsRAv-a~L~~l~e~~~pllk~~g~~~~  166 (215)
T COG0357         138 VVTSRAV-ASLNVLLELCLPLLKVGGGFLA  166 (215)
T ss_pred             EEEeehc-cchHHHHHHHHHhcccCCcchh
Confidence            9998863 3567788889999999888764

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.86  E-value=3.8e-09  Score=84.15  Aligned_cols=104  Identities=15%  Similarity=0.268  Sum_probs=81.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHHcCC-CCcEEEEecchhHHHHHHHhcccCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGV-DHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ..+..+|||.++|-||.++..++.   ++ +|+++|.+|+.++.|.-|==..++ ..+++++.||+.+.++.+     .+
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~r---GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~-----~D  203 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALER---GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDF-----DD  203 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHc---CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcC-----Cc
Confidence            446789999999999999988874   44 999999999999888654111111 135899999999999887     36


Q ss_pred             CCeeEEEEcCCc-----c-chHHHHHHHHhccCCCeEEEE
Q 026461          146 GSFDYAFVDADK-----D-NYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       146 ~~fD~V~~d~~~-----~-~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      .+||+|+-|.+.     + ...++++++++.|+|||.++.
T Consensus       204 ~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH  243 (287)
T COG2521         204 ESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH  243 (287)
T ss_pred             cccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence            799999988642     1 236788999999999999875

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.84  E-value=4e-09  Score=84.44  Aligned_cols=111  Identities=12%  Similarity=0.106  Sum_probs=75.0

Q ss_pred             HHHHHHHHhhcCCC-EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHH
Q 026461           59 GQLMAMLLRLVNAK-KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ  137 (238)
Q Consensus        59 ~~~l~~l~~~~~~~-~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~  137 (238)
                      ...+..++...... .++|+|||+|..++.+++++.   +|+++|+++.+++.|++...........++...+..+++. 
T Consensus        21 tdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g-   96 (261)
T KOG3010|consen   21 TDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG-   96 (261)
T ss_pred             HHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccccCCccccccccccccC-
Confidence            33444454444443 799999999988888888865   8999999999999988764222111112233323223321 


Q ss_pred             HHhcccCCCCeeEEEEcCC--ccchHHHHHHHHhccCCCe-EEEE
Q 026461          138 LLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG-IAVY  179 (238)
Q Consensus       138 ~~~~~~~~~~fD~V~~d~~--~~~~~~~~~~~~~~L~~gG-~lv~  179 (238)
                            .+++.|+|.+...  .-+...+++.+.+.||+.| ++.+
T Consensus        97 ------~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iav  135 (261)
T KOG3010|consen   97 ------GEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAV  135 (261)
T ss_pred             ------CCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence                  2589999987632  3456899999999998866 6665

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.84  E-value=5.9e-08  Score=81.22  Aligned_cols=101  Identities=15%  Similarity=0.047  Sum_probs=71.7

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      +++.....+...+...++.+|||||||+|..|..++...   .+|+++|+++.+++.+++++..    ++++++++|+.+
T Consensus        26 ~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~   98 (272)
T PRK00274         26 IDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALK   98 (272)
T ss_pred             CCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhc
Confidence            445554444445555677899999999999999999874   3899999999999999987642    579999999887


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHH
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM  168 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~  168 (238)
                      ....       .-.+|.|+.+.+..-...++..+.
T Consensus        99 ~~~~-------~~~~~~vv~NlPY~iss~ii~~~l  126 (272)
T PRK00274         99 VDLS-------ELQPLKVVANLPYNITTPLLFHLL  126 (272)
T ss_pred             CCHH-------HcCcceEEEeCCccchHHHHHHHH
Confidence            5211       111577877755433344444444

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.83  E-value=4.7e-08  Score=80.95  Aligned_cols=101  Identities=17%  Similarity=0.121  Sum_probs=71.7

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      +.+....-+...+...++.+|||||||+|..|..+++..+   +|+++|+++.+++.+++++..   ..+++++++|+.+
T Consensus        13 ~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~   86 (253)
T TIGR00755        13 IDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALK   86 (253)
T ss_pred             CCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhc
Confidence            4455544444444556778999999999999999998754   699999999999999987743   3579999999877


Q ss_pred             HHHHHHhcccCCCCee---EEEEcCCccchHHHHHHHHh
Q 026461          134 VLDQLLKYSENEGSFD---YAFVDADKDNYCNYHERLMK  169 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD---~V~~d~~~~~~~~~~~~~~~  169 (238)
                      ...         ..+|   +|+.+.+.......+..+..
T Consensus        87 ~~~---------~~~d~~~~vvsNlPy~i~~~il~~ll~  116 (253)
T TIGR00755        87 VDL---------PDFPKQLKVVSNLPYNISSPLIFKLLE  116 (253)
T ss_pred             CCh---------hHcCCcceEEEcCChhhHHHHHHHHhc
Confidence            521         1344   77766554444445555443

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.79  E-value=1.8e-07  Score=77.19  Aligned_cols=123  Identities=21%  Similarity=0.244  Sum_probs=96.5

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--H
Q 026461           59 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--L  135 (238)
Q Consensus        59 ~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l  135 (238)
                      .+.+..|.....+-+||||.||.|...+-.....+. ..+|...|.++..++.+++.++..|+.+-++|.++|+.+.  +
T Consensus       124 ~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l  203 (311)
T PF12147_consen  124 RQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSL  203 (311)
T ss_pred             HHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHh
Confidence            333334444457789999999999999988888874 3689999999999999999999999998779999999885  3


Q ss_pred             HHHHhcccCCCCeeEEEEcCCccc------hHHHHHHHHhccCCCeEEEEeccccCcc
Q 026461          136 DQLLKYSENEGSFDYAFVDADKDN------YCNYHERLMKLLKVGGIAVYDNTLWGGT  187 (238)
Q Consensus       136 ~~~~~~~~~~~~fD~V~~d~~~~~------~~~~~~~~~~~L~~gG~lv~~~~~~~g~  187 (238)
                      ..+      ....+++++.+-.+.      ....+..+...+.|||++|.-+--|+-.
T Consensus       204 ~~l------~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ  255 (311)
T PF12147_consen  204 AAL------DPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ  255 (311)
T ss_pred             hcc------CCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence            333      467899998763322      3446777789999999999877666543

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PRK04148 hypothetical protein; Provisional

Probab=98.75  E-value=1.2e-07  Score=70.24  Aligned_cols=98  Identities=12%  Similarity=0.098  Sum_probs=71.3

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHH
Q 026461           58 AGQLMAMLLRLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD  136 (238)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~-~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~  136 (238)
                      .++.|.......++++|||||||+|. .+..|++.   +..|+++|+++..++.++++        .++++.+|..+--.
T Consensus         4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~   72 (134)
T PRK04148          4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNL   72 (134)
T ss_pred             HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCH
Confidence            34444444444456789999999997 66677753   57999999999998888765        26888999887544


Q ss_pred             HHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccC
Q 026461          137 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLK  172 (238)
Q Consensus       137 ~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~  172 (238)
                      .+      -+.+|+|+.--++......+-.+.+.+.
T Consensus        73 ~~------y~~a~liysirpp~el~~~~~~la~~~~  102 (134)
T PRK04148         73 EI------YKNAKLIYSIRPPRDLQPFILELAKKIN  102 (134)
T ss_pred             HH------HhcCCEEEEeCCCHHHHHHHHHHHHHcC
Confidence            44      4799999988777666666666655443

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.71  E-value=8.4e-08  Score=79.63  Aligned_cols=105  Identities=20%  Similarity=0.283  Sum_probs=69.1

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHH-HcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK-KAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        70 ~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      .|++|+=||||. -.+++.|++....+..|+++|+++++++.+++.+. ..++..+++|+.+|..+....+       ..
T Consensus       120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl-------~~  192 (276)
T PF03059_consen  120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL-------KE  192 (276)
T ss_dssp             ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----------
T ss_pred             ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc-------cc
Confidence            356999999994 55667777654336789999999999999999888 6677889999999987764333       79


Q ss_pred             eeEEEEcCCcc----chHHHHHHHHhccCCCeEEEEec
Q 026461          148 FDYAFVDADKD----NYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       148 fD~V~~d~~~~----~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ||+||+.+-..    .-.+.++.+.+.++||+.|++-.
T Consensus       193 ~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs  230 (276)
T PF03059_consen  193 YDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRS  230 (276)
T ss_dssp             -SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred             CCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence            99999986544    66789999999999999999863

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.68  E-value=7.7e-08  Score=82.38  Aligned_cols=105  Identities=19%  Similarity=0.207  Sum_probs=70.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC---------CCCcEEEEecchhHH-HH-HH
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG---------VDHKINFIESEALSV-LD-QL  138 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---------~~~~v~~~~~d~~~~-l~-~~  138 (238)
                      ++.+|||+|||-|+-..-+..+-  -.+++|+|++.+.++.|++......         ..-...++.+|.... +. .+
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~  139 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL  139 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred             CCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence            56799999999888666555542  4799999999999999999883311         112356788887642 22 12


Q ss_pred             HhcccCCCCeeEEEEcC-------CccchHHHHHHHHhccCCCeEEEE
Q 026461          139 LKYSENEGSFDYAFVDA-------DKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       139 ~~~~~~~~~fD~V~~d~-------~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      .   +...+||+|-+--       .......++..+..+|+|||+++.
T Consensus       140 ~---~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIg  184 (331)
T PF03291_consen  140 P---PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIG  184 (331)
T ss_dssp             S---STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             c---ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            1   1135999997642       233456799999999999999886

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.68  E-value=1.5e-07  Score=79.75  Aligned_cols=118  Identities=19%  Similarity=0.211  Sum_probs=96.1

Q ss_pred             ccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec-c
Q 026461           52 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-E  130 (238)
Q Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d  130 (238)
                      .++.|..+.++-.|++..++..|||=-||||...+...-.   +.+++|+|++..+++-|+.|++..++.+ ..+... |
T Consensus       179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~D  254 (347)
T COG1041         179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLD  254 (347)
T ss_pred             CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecc
Confidence            4678999999999999989999999999999998876653   6899999999999999999999998765 444444 8


Q ss_pred             hhHHHHHHHhcccCCCCeeEEEEcCCc------------cchHHHHHHHHhccCCCeEEEEe
Q 026461          131 ALSVLDQLLKYSENEGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       131 ~~~~l~~~~~~~~~~~~fD~V~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      +....  +.     ...+|.|..|.+-            ..+.++++.+.+.|++||.+++-
T Consensus       255 a~~lp--l~-----~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~  309 (347)
T COG1041         255 ATNLP--LR-----DNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA  309 (347)
T ss_pred             cccCC--CC-----CCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence            86652  41     3469999999641            22567888888999999998874

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=98.65  E-value=1.2e-07  Score=81.64  Aligned_cols=111  Identities=19%  Similarity=0.209  Sum_probs=88.3

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ...++.+|||.++..|+-|.++|..+...|.|++-|.+...+...+.++.+.|+.+ .-+.+.|..++....    + .+
T Consensus       238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~----~-~~  311 (460)
T KOG1122|consen  238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKE----F-PG  311 (460)
T ss_pred             CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCcccccccc----c-Cc
Confidence            34456799999999999999999999888999999999999999999999999865 556677776543221    1 34


Q ss_pred             CeeEEEEcCCccch-------------------------HHHHHHHHhccCCCeEEEEeccc
Q 026461          147 SFDYAFVDADKDNY-------------------------CNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       147 ~fD~V~~d~~~~~~-------------------------~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      +||-|++|++++..                         .+++..+.+++++||+||-+.+.
T Consensus       312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS  373 (460)
T KOG1122|consen  312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS  373 (460)
T ss_pred             ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence            89999999865541                         34555566899999999976554

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.64  E-value=3.6e-07  Score=79.20  Aligned_cols=113  Identities=17%  Similarity=0.223  Sum_probs=69.2

Q ss_pred             CccCcHhHHHHH-HHHHhhcC--CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEE
Q 026461           51 MMGTAPDAGQLM-AMLLRLVN--AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI  127 (238)
Q Consensus        51 ~~~~~~~~~~~l-~~l~~~~~--~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~  127 (238)
                      +..+.+...+-+ .......+  +..|||+-||.|..++.+|...   .+|+|||+++++++.|++|+..+++. +++|+
T Consensus       174 FfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f~  249 (352)
T PF05958_consen  174 FFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGID-NVEFI  249 (352)
T ss_dssp             ---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT---SEEEE
T ss_pred             CccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCC-cceEE
Confidence            334455554443 33333322  3389999999999999999864   59999999999999999999999985 59999


Q ss_pred             ecchhHHHHHHHhc---------ccCCCCeeEEEEcCCccchH-HHHHHH
Q 026461          128 ESEALSVLDQLLKY---------SENEGSFDYAFVDADKDNYC-NYHERL  167 (238)
Q Consensus       128 ~~d~~~~l~~~~~~---------~~~~~~fD~V~~d~~~~~~~-~~~~~~  167 (238)
                      .+++.++...+...         .-....+|+|++|.+..... ..++.+
T Consensus       250 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~  299 (352)
T PF05958_consen  250 RGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELI  299 (352)
T ss_dssp             E--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHH
T ss_pred             EeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHH
Confidence            98887653332100         00123789999998765554 344444

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=1.2e-06  Score=72.13  Aligned_cols=102  Identities=14%  Similarity=0.089  Sum_probs=74.3

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      .+....+-+-..+...+...|||||+|.|..|..|++..   .+|+++|+++..++..++.+.   ..++++++++|+.+
T Consensus        14 ~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk   87 (259)
T COG0030          14 IDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALK   87 (259)
T ss_pred             cCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhc
Confidence            334343333344445567899999999999999999964   589999999999999998875   33679999999988


Q ss_pred             H-HHHHHhcccCCCCeeEEEEcCCccchHHHHHHHH
Q 026461          134 V-LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM  168 (238)
Q Consensus       134 ~-l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~  168 (238)
                      . ++.+       ..++.|+.+.+-.-..+++..+.
T Consensus        88 ~d~~~l-------~~~~~vVaNlPY~Isspii~kll  116 (259)
T COG0030          88 FDFPSL-------AQPYKVVANLPYNISSPILFKLL  116 (259)
T ss_pred             Ccchhh-------cCCCEEEEcCCCcccHHHHHHHH
Confidence            6 2222       17889998876544455544443

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.61  E-value=6.7e-08  Score=71.55  Aligned_cols=94  Identities=18%  Similarity=0.289  Sum_probs=72.2

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ...+++++|+|||+|...+..+  ++....|+|+|++|++++.++.|.....++  ++++++|+.+....       .+.
T Consensus        46 diEgkkl~DLgcgcGmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~-------~g~  114 (185)
T KOG3420|consen   46 DIEGKKLKDLGCGCGMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELK-------GGI  114 (185)
T ss_pred             cccCcchhhhcCchhhhHHHhh--cCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhcc-------CCe
Confidence            3568899999999999885444  454678999999999999999999888763  68999998877443       589


Q ss_pred             eeEEEEcCCc-----cchHHHHHHHHhccC
Q 026461          148 FDYAFVDADK-----DNYCNYHERLMKLLK  172 (238)
Q Consensus       148 fD~V~~d~~~-----~~~~~~~~~~~~~L~  172 (238)
                      ||.++++.+.     ..-.++++..+++.+
T Consensus       115 fDtaviNppFGTk~~~aDm~fv~~al~~~~  144 (185)
T KOG3420|consen  115 FDTAVINPPFGTKKKGADMEFVSAALKVAS  144 (185)
T ss_pred             EeeEEecCCCCcccccccHHHHHHHHHHHH
Confidence            9999998642     223556666655544

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.60  E-value=9.3e-07  Score=75.00  Aligned_cols=106  Identities=20%  Similarity=0.278  Sum_probs=85.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHH--HHcC---C-CCcEEEEecchhHHHHHHHhcc
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII--KKAG---V-DHKINFIESEALSVLDQLLKYS  142 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~--~~~~---~-~~~v~~~~~d~~~~l~~~~~~~  142 (238)
                      ....++|-+|-|.|.....+.+. |.-.+|+-+|.+|.+++.++++.  +..+   + +.|++++..|+..++...    
T Consensus       288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a----  362 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA----  362 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh----
Confidence            45679999999999999999885 54689999999999999998443  3322   1 268999999999999876    


Q ss_pred             cCCCCeeEEEEcCCccc--------hHHHHHHHHhccCCCeEEEEec
Q 026461          143 ENEGSFDYAFVDADKDN--------YCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       143 ~~~~~fD~V~~d~~~~~--------~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                        ...||+|++|-..+.        ..+++..+.+.|+++|.+|+..
T Consensus       363 --~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa  407 (508)
T COG4262         363 --ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA  407 (508)
T ss_pred             --cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence              579999999953222        2577888889999999999863

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.60  E-value=2.3e-07  Score=77.83  Aligned_cols=99  Identities=14%  Similarity=0.203  Sum_probs=77.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      ...+.|||+|||+|..+.+.+.+-  ..+|.++|.+ ++.++|++.++.+++.+||.++.|.++++  ++      +++.
T Consensus       176 F~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdi--eL------PEk~  244 (517)
T KOG1500|consen  176 FQDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDI--EL------PEKV  244 (517)
T ss_pred             cCCcEEEEecCCccHHHHHHHHhC--cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccc--cC------chhc
Confidence            467899999999999999888763  5799999985 68899999999999999999999999886  44      5899


Q ss_pred             eEEEEcCC-----ccchHHHHHHHHhccCCCeEEE
Q 026461          149 DYAFVDAD-----KDNYCNYHERLMKLLKVGGIAV  178 (238)
Q Consensus       149 D~V~~d~~-----~~~~~~~~~~~~~~L~~gG~lv  178 (238)
                      |+|+...-     .+.+.+-+-.+.+.|+|.|...
T Consensus       245 DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf  279 (517)
T KOG1500|consen  245 DVIISEPMGYMLVNERMLESYLHARKWLKPNGKMF  279 (517)
T ss_pred             cEEEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence            99997631     1122222233358999999765

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.59  E-value=6.7e-07  Score=73.00  Aligned_cols=91  Identities=12%  Similarity=0.091  Sum_probs=74.1

Q ss_pred             HhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHH
Q 026461           56 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL  135 (238)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l  135 (238)
                      +....-+..-+...++..|||||.|+|..|..|++.   +.+|+++|+++.+++...+.++....+++.++++||.... 
T Consensus        44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~-  119 (315)
T KOG0820|consen   44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT-  119 (315)
T ss_pred             HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC-
Confidence            444444444455677889999999999999999996   5699999999999999999998777778999999998766 


Q ss_pred             HHHHhcccCCCCeeEEEEcCCcc
Q 026461          136 DQLLKYSENEGSFDYAFVDADKD  158 (238)
Q Consensus       136 ~~~~~~~~~~~~fD~V~~d~~~~  158 (238)
                       .       ...||.++.+-+..
T Consensus       120 -d-------~P~fd~cVsNlPyq  134 (315)
T KOG0820|consen  120 -D-------LPRFDGCVSNLPYQ  134 (315)
T ss_pred             -C-------CcccceeeccCCcc
Confidence             1       36899999875543

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.58  E-value=7.8e-07  Score=71.15  Aligned_cols=99  Identities=18%  Similarity=0.182  Sum_probs=73.5

Q ss_pred             EEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEE
Q 026461           74 TIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFV  153 (238)
Q Consensus        74 vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~  153 (238)
                      |.||||--|+..++|++.-. ..+++++|+++..++.|++++...|+.+++++..+|.++.++.       .+..|.|++
T Consensus         1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-------~e~~d~ivI   72 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-------GEDVDTIVI   72 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-------GG---EEEE
T ss_pred             CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-------CCCCCEEEE
Confidence            68999999999999999754 5789999999999999999999999999999999999887653       234799988


Q ss_pred             cC-CccchHHHHHHHHhccCCCeEEEEe
Q 026461          154 DA-DKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       154 d~-~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      .+ +-....++++.....++....+++.
T Consensus        73 AGMGG~lI~~ILe~~~~~~~~~~~lILq  100 (205)
T PF04816_consen   73 AGMGGELIIEILEAGPEKLSSAKRLILQ  100 (205)
T ss_dssp             EEE-HHHHHHHHHHTGGGGTT--EEEEE
T ss_pred             ecCCHHHHHHHHHhhHHHhccCCeEEEe
Confidence            75 3344567777776667666677775

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=98.56  E-value=2.7e-07  Score=75.62  Aligned_cols=139  Identities=19%  Similarity=0.202  Sum_probs=88.8

Q ss_pred             CcHhHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHhhC---C-CCCEEEEEeCCc--------------------
Q 026461           54 TAPDAGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTI---P-EDGQITAIDVNR--------------------  105 (238)
Q Consensus        54 ~~~~~~~~l~~l~~----~~~~~~vLeiG~G~G~~t~~la~~~---~-~~~~v~~iD~~~--------------------  105 (238)
                      +...-...|..++.    ..-|..|+|+||..|.+++.++..+   . +.-+++++|--.                    
T Consensus        54 ~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~  133 (248)
T PF05711_consen   54 IGRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHE  133 (248)
T ss_dssp             SHHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCG
T ss_pred             cCHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhh
Confidence            44545555555544    2347789999999999987765432   2 234688888421                    


Q ss_pred             ------hhHHHHHHHHHHcCC-CCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCc-cchHHHHHHHHhccCCCeEE
Q 026461          106 ------ETYEIGLPIIKKAGV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-DNYCNYHERLMKLLKVGGIA  177 (238)
Q Consensus       106 ------~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~-~~~~~~~~~~~~~L~~gG~l  177 (238)
                            -..+..++++.+.|+ .++++++.|...+.++...     .+.+-++.+|++. +.....++.+++.|.|||+|
T Consensus       134 ~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p-----~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiI  208 (248)
T PF05711_consen  134 YNGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAP-----IERIALLHLDCDLYESTKDALEFLYPRLSPGGII  208 (248)
T ss_dssp             CCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-T-----T--EEEEEE---SHHHHHHHHHHHGGGEEEEEEE
T ss_pred             cccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCC-----CccEEEEEEeccchHHHHHHHHHHHhhcCCCeEE
Confidence                  134555666666664 3579999999988887542     4688888999753 44577888899999999999


Q ss_pred             EEeccccCccccCCCCCCCCCcccchHHHHHHHHHH
Q 026461          178 VYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRS  213 (238)
Q Consensus       178 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (238)
                      ++||....|                +.+++++|.+.
T Consensus       209 i~DDY~~~g----------------cr~AvdeF~~~  228 (248)
T PF05711_consen  209 IFDDYGHPG----------------CRKAVDEFRAE  228 (248)
T ss_dssp             EESSTTTHH----------------HHHHHHHHHHH
T ss_pred             EEeCCCChH----------------HHHHHHHHHHH
Confidence            999987644                67778888554

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.53  E-value=4e-07  Score=70.17  Aligned_cols=78  Identities=14%  Similarity=0.192  Sum_probs=60.4

Q ss_pred             EEEeCCchhHHHHHHHHHHcC--CCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcC---CccchHHHHHHHHhccCC
Q 026461           99 TAIDVNRETYEIGLPIIKKAG--VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKV  173 (238)
Q Consensus        99 ~~iD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~---~~~~~~~~~~~~~~~L~~  173 (238)
                      +|+|+|+++++.|++.....+  ...+++++++|+.+. + +     ..++||+|++..   ...+....++++.+.|||
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p-~-----~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkp   73 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-P-F-----DDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKP   73 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-C-C-----CCCCeeEEEecchhhcCCCHHHHHHHHHHHcCc
Confidence            589999999999987765322  234699999998765 2 1     257999998864   344567889999999999


Q ss_pred             CeEEEEeccc
Q 026461          174 GGIAVYDNTL  183 (238)
Q Consensus       174 gG~lv~~~~~  183 (238)
                      ||.+++-+..
T Consensus        74 GG~l~i~d~~   83 (160)
T PLN02232         74 GSRVSILDFN   83 (160)
T ss_pred             CeEEEEEECC
Confidence            9999887654

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.51  E-value=1.3e-06  Score=73.27  Aligned_cols=164  Identities=18%  Similarity=0.176  Sum_probs=97.1

Q ss_pred             HHhhhhcCCCCcHHHHHHHHhccCCCCCChHHHHHHHH-HhcCCCCCccCcHhHHHHHHHHHhh-cCCCEEEEEcccccH
Q 026461            6 KQAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDV-TADHPWAMMGTAPDAGQLMAMLLRL-VNAKKTIEIGVFTGY   83 (238)
Q Consensus         6 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~vLeiG~G~G~   83 (238)
                      .+-|...++..-+.+..++...    ...+.+.++... +...  ..+.-++..-..|...+.. ..+-+|+-.||++|-
T Consensus        55 ~~r~~~~g~~s~~~y~~~L~~~----~~~~e~~~li~~ltine--T~FFRd~~~f~~L~~~~~~~~~~irIWSAgCStGE  128 (287)
T PRK10611         55 VRRLRSLGLNDFGQYLALLESN----QNSAEWQAFINALTTNL--TAFFREAHHFPILAEHARRRSGEYRVWSAAASTGE  128 (287)
T ss_pred             HHHHHHcCCCCHHHHHHHHhcC----CCHHHHHHHHHHhhCCC--CCccCCcHHHHHHHHHHHhcCCCEEEEEccccCCH
Confidence            3444445555555555555531    122344444332 2222  2333455555555544432 234699999999997


Q ss_pred             HH----HHHHhhCC---CCCEEEEEeCCchhHHHHHHHH------------------HHc-----C-------CCCcEEE
Q 026461           84 SL----LLTALTIP---EDGQITAIDVNRETYEIGLPII------------------KKA-----G-------VDHKINF  126 (238)
Q Consensus        84 ~t----~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~------------------~~~-----~-------~~~~v~~  126 (238)
                      =.    +.+.+..+   ...+|+|+|+|+.+++.|++..                  ...     +       +...|+|
T Consensus       129 EpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F  208 (287)
T PRK10611        129 EPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDF  208 (287)
T ss_pred             HHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEE
Confidence            33    33334332   1368999999999999997642                  110     1       2245677


Q ss_pred             EecchhHHHHHHHhcccCCCCeeEEEEcC-----CccchHHHHHHHHhccCCCeEEEEec
Q 026461          127 IESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       127 ~~~d~~~~l~~~~~~~~~~~~fD~V~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ...|..+..  .    +..+.||+||+-.     ........++.+.+.|+|||+|++..
T Consensus       209 ~~~NL~~~~--~----~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~  262 (287)
T PRK10611        209 QQLNLLAKQ--W----AVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             EcccCCCCC--C----ccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence            777775521  0    1147899999853     23345678889999999999998853

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.51  E-value=2.3e-07  Score=75.37  Aligned_cols=93  Identities=15%  Similarity=0.137  Sum_probs=59.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHH-HHHHHHHcCCCCcEE-EEecchhHH-HHHHHhcccCC
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI-GLPIIKKAGVDHKIN-FIESEALSV-LDQLLKYSENE  145 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~-a~~~~~~~~~~~~v~-~~~~d~~~~-l~~~~~~~~~~  145 (238)
                      .+.+.|||+|||+|.+|..+++. + ..+|+++|+++.++.. .+++       .++. +...|+... +....   ..-
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~~l~~~-------~~v~~~~~~ni~~~~~~~~~---~d~  141 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAEKLRQD-------ERVKVLERTNIRYVTPADIF---PDF  141 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHhcC-------CCeeEeecCCcccCCHhHcC---CCc
Confidence            35678999999999999999985 2 5789999999977765 2221       2332 333344321 11110   013


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ..+|++|+..     ...+..+.++|++ |.+++
T Consensus       142 ~~~DvsfiS~-----~~~l~~i~~~l~~-~~~~~  169 (228)
T TIGR00478       142 ATFDVSFISL-----ISILPELDLLLNP-NDLTL  169 (228)
T ss_pred             eeeeEEEeeh-----HhHHHHHHHHhCc-CeEEE
Confidence            4788888754     2246777888888 65543

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.50  E-value=9.1e-07  Score=73.87  Aligned_cols=107  Identities=18%  Similarity=0.193  Sum_probs=76.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCC-----cEEEEecchhHH-HHHHHhcc
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-----KINFIESEALSV-LDQLLKYS  142 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-----~v~~~~~d~~~~-l~~~~~~~  142 (238)
                      .+...++++|||-|+-.+-+-.+-  -+.++|+||..-.++.|++..+......     .+.|+.+|.... +..+.+  
T Consensus       116 ~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e--  191 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLE--  191 (389)
T ss_pred             ccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhcc--
Confidence            456789999999999887766542  4799999999999999998877543222     268899997652 333321  


Q ss_pred             cCCCCeeEEEEc---C----CccchHHHHHHHHhccCCCeEEEE
Q 026461          143 ENEGSFDYAFVD---A----DKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       143 ~~~~~fD~V~~d---~----~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      +...+||+|-+-   +    ......-++.++..+|+|||+++-
T Consensus       192 ~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg  235 (389)
T KOG1975|consen  192 FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG  235 (389)
T ss_pred             CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence            123459999542   2    223446688899999999999985

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.49  E-value=8.4e-07  Score=78.32  Aligned_cols=122  Identities=16%  Similarity=0.168  Sum_probs=89.2

Q ss_pred             CccCcHhHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEE
Q 026461           51 MMGTAPDAGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF  126 (238)
Q Consensus        51 ~~~~~~~~~~~l~~l~~----~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~  126 (238)
                      ++......++.|+..+.    ....+.++|+.||+|..++.++...   .+|+|||++++.++.|+.|...+|++ +.+|
T Consensus       360 FFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~F  435 (534)
T KOG2187|consen  360 FFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGIS-NATF  435 (534)
T ss_pred             hhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCcc-ceee
Confidence            34556677888887765    4456789999999999999999864   59999999999999999999999986 4999


Q ss_pred             EecchhHHHHHHHhcccCCCCee-EEEEcCCccch-HHHHHHHHhccCCCeEEE
Q 026461          127 IESEALSVLDQLLKYSENEGSFD-YAFVDADKDNY-CNYHERLMKLLKVGGIAV  178 (238)
Q Consensus       127 ~~~d~~~~l~~~~~~~~~~~~fD-~V~~d~~~~~~-~~~~~~~~~~L~~gG~lv  178 (238)
                      ++|.+++.++.+...  .-++-+ ++++|.+.... ..++..+...-++-=++.
T Consensus       436 i~gqaE~~~~sl~~~--~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvy  487 (534)
T KOG2187|consen  436 IVGQAEDLFPSLLTP--CCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVY  487 (534)
T ss_pred             eecchhhccchhccc--CCCCCceEEEECCCcccccHHHHHHHHhccCccceEE
Confidence            999999988877432  112445 66778665544 344444444433443333

>PRK10742 putative methyltransferase; Provisional

Probab=98.42  E-value=2.8e-06  Score=69.25  Aligned_cols=88  Identities=10%  Similarity=0.179  Sum_probs=72.0

Q ss_pred             HHHHHHHhhcCCC--EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc------C--CCCcEEEEec
Q 026461           60 QLMAMLLRLVNAK--KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA------G--VDHKINFIES  129 (238)
Q Consensus        60 ~~l~~l~~~~~~~--~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------~--~~~~v~~~~~  129 (238)
                      +.|...+...++.  +|||+.+|.|.-++.++..   +++|+++|-++......++++...      +  +..+++++++
T Consensus        76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~  152 (250)
T PRK10742         76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA  152 (250)
T ss_pred             cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence            4555555555555  8999999999999999975   567999999999999999999885      2  2257999999


Q ss_pred             chhHHHHHHHhcccCCCCeeEEEEcCC
Q 026461          130 EALSVLDQLLKYSENEGSFDYAFVDAD  156 (238)
Q Consensus       130 d~~~~l~~~~~~~~~~~~fD~V~~d~~  156 (238)
                      |+.+++...      ..+||+||+|..
T Consensus       153 da~~~L~~~------~~~fDVVYlDPM  173 (250)
T PRK10742        153 SSLTALTDI------TPRPQVVYLDPM  173 (250)
T ss_pred             cHHHHHhhC------CCCCcEEEECCC
Confidence            999998875      458999999964

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.40  E-value=1.4e-05  Score=65.33  Aligned_cols=132  Identities=14%  Similarity=0.082  Sum_probs=85.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      +..++||||+|.|..|..++..+.   +|++.|.|+.|....    ++.|+    +++.  ..++ ..      ...+||
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL----~~kg~----~vl~--~~~w-~~------~~~~fD  153 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRL----SKKGF----TVLD--IDDW-QQ------TDFKFD  153 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHH----HhCCC----eEEe--hhhh-hc------cCCceE
Confidence            556899999999999999998765   799999998875544    44453    4443  3332 21      146999


Q ss_pred             EEEEcC---CccchHHHHHHHHhccCCCeEEEEeccccCccc--------cCCCCCCCCCcccchHHHHHHHHHHhhcCC
Q 026461          150 YAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTV--------AVPEEQVPDHFRGSSRQAILDLNRSLADDP  218 (238)
Q Consensus       150 ~V~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  218 (238)
                      +|.+-.   -+.....+++.+.+.|+|+|++++.=++.-..+        ..|.+..+-.-+ +....+..+. .+.+-.
T Consensus       154 vIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~-~~E~~v~~l~-~v~~p~  231 (265)
T PF05219_consen  154 VISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGA-TFEEQVSSLV-NVFEPA  231 (265)
T ss_pred             EEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCC-cHHHHHHHHH-HHHHhc
Confidence            998643   244567788999999999999998765522221        112111111112 2555566777 455566


Q ss_pred             CeeEE
Q 026461          219 RVQLS  223 (238)
Q Consensus       219 ~~~~~  223 (238)
                      +|++.
T Consensus       232 GF~v~  236 (265)
T PF05219_consen  232 GFEVE  236 (265)
T ss_pred             CCEEE
Confidence            77765

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.40  E-value=5.2e-06  Score=70.07  Aligned_cols=93  Identities=12%  Similarity=0.101  Sum_probs=73.1

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHH
Q 026461           59 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL  138 (238)
Q Consensus        59 ~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~  138 (238)
                      .+++..|. ..++..++|+.+|.|+.|..+++.++ .++|+++|.++.+++.+++.+...  .+++++++++..++...+
T Consensus        10 ~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l   85 (305)
T TIGR00006        10 DEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHL   85 (305)
T ss_pred             HHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHH
Confidence            44444442 34667999999999999999999987 599999999999999999988654  468999999988766555


Q ss_pred             HhcccCCCCeeEEEEcCCc
Q 026461          139 LKYSENEGSFDYAFVDADK  157 (238)
Q Consensus       139 ~~~~~~~~~fD~V~~d~~~  157 (238)
                      ...  ...++|.|++|.+.
T Consensus        86 ~~~--~~~~vDgIl~DLGv  102 (305)
T TIGR00006        86 DEL--LVTKIDGILVDLGV  102 (305)
T ss_pred             Hhc--CCCcccEEEEeccC
Confidence            321  23579999998544

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.39  E-value=2.7e-06  Score=72.53  Aligned_cols=124  Identities=21%  Similarity=0.247  Sum_probs=83.8

Q ss_pred             CCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhC------CCCCEEEEEeCCchhHHHHHHHHHHcCCCC
Q 026461           49 WAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI------PEDGQITAIDVNRETYEIGLPIIKKAGVDH  122 (238)
Q Consensus        49 ~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~------~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~  122 (238)
                      .+....+.....++..++...+..+|+|-+||+|.....+.+.+      ....+++|+|+++..+..++-++.-.+...
T Consensus        25 ~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~  104 (311)
T PF02384_consen   25 LGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN  104 (311)
T ss_dssp             CGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC
T ss_pred             cceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc
Confidence            44555678889999999977777789999999999998887743      126799999999999999998887666543


Q ss_pred             c-EEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccc------------------------hHHHHHHHHhccCCCeEE
Q 026461          123 K-INFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN------------------------YCNYHERLMKLLKVGGIA  177 (238)
Q Consensus       123 ~-v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~------------------------~~~~~~~~~~~L~~gG~l  177 (238)
                      . ..+..+|........     ....||+|+.+.+...                        ...++..+...|++||.+
T Consensus       105 ~~~~i~~~d~l~~~~~~-----~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~  179 (311)
T PF02384_consen  105 SNINIIQGDSLENDKFI-----KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRA  179 (311)
T ss_dssp             BGCEEEES-TTTSHSCT-----ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEE
T ss_pred             ccccccccccccccccc-----cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccce
Confidence            3 468888876542210     1369999998743111                        024678888999999964

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=98.39  E-value=4.6e-06  Score=68.98  Aligned_cols=150  Identities=17%  Similarity=0.244  Sum_probs=111.2

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc--CCC-CcEEEEecchhHHHHHHHhccc
Q 026461           67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GVD-HKINFIESEALSVLDQLLKYSE  143 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~~-~~v~~~~~d~~~~l~~~~~~~~  143 (238)
                      +..+|+++|-||-|-|......+.+ +.-..++-+|++...++..++++...  |+. .++.+..||...+++...    
T Consensus       118 s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~----  192 (337)
T KOG1562|consen  118 SHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK----  192 (337)
T ss_pred             cCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc----
Confidence            4678999999999999998888877 44578999999999999999988753  333 679999999999988763    


Q ss_pred             CCCCeeEEEEcCCccc-------hHHHHHHHHhccCCCeEEEEec-cccCccccCCCCCCCCCcccchHHHHHHHHHHhh
Q 026461          144 NEGSFDYAFVDADKDN-------YCNYHERLMKLLKVGGIAVYDN-TLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLA  215 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~~-------~~~~~~~~~~~L~~gG~lv~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  215 (238)
                       .++||+|+.|....-       ...+++.+.+.||++|+++... ..|            -+.+  ..+-++.|-+.+.
T Consensus       193 -~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~w------------l~~~--~i~e~r~~~~~~f  257 (337)
T KOG1562|consen  193 -ENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMW------------LHLD--YIKEGRSFCYVIF  257 (337)
T ss_pred             -cCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceeh------------HHHH--HHHHHHHhHHHhc
Confidence             589999999863211       2568888899999999988742 232            1111  4445777777776


Q ss_pred             cCCCeeEEeeecC----CeeEEEEE
Q 026461          216 DDPRVQLSHVALG----DGITICRR  236 (238)
Q Consensus       216 ~~~~~~~~~lp~~----~G~~i~~~  236 (238)
                      ..-.+-.+..|..    -|+.+|.+
T Consensus       258 ~~t~ya~ttvPTypsg~igf~l~s~  282 (337)
T KOG1562|consen  258 DLTAYAITTVPTYPSGRIGFMLCSK  282 (337)
T ss_pred             CccceeeecCCCCccceEEEEEecc
Confidence            6666666666633    56666653

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.39  E-value=5.9e-06  Score=66.11  Aligned_cols=118  Identities=16%  Similarity=0.217  Sum_probs=70.6

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHH-------HcCC-CCcEEEEec
Q 026461           58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK-------KAGV-DHKINFIES  129 (238)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-------~~~~-~~~v~~~~~  129 (238)
                      ...++. .+...+....+|||||.|...++.|...+ ..+.+|||+.+...+.|+....       ..|. ..++++.++
T Consensus        31 ~~~il~-~~~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g  108 (205)
T PF08123_consen   31 VSKILD-ELNLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG  108 (205)
T ss_dssp             HHHHHH-HTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred             HHHHHH-HhCCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence            344443 34566778999999999999988887655 6679999999998887765433       2343 256888999


Q ss_pred             chhHH--HHHHHhcccCCCCeeEEEEcCCc--cchHHHHHHHHhccCCCeEEEEeccc
Q 026461          130 EALSV--LDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       130 d~~~~--l~~~~~~~~~~~~fD~V~~d~~~--~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      |..+.  ....      ...-|+||++...  +.....+......||+|..||.-.-+
T Consensus       109 dfl~~~~~~~~------~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~~~  160 (205)
T PF08123_consen  109 DFLDPDFVKDI------WSDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTKPF  160 (205)
T ss_dssp             -TTTHHHHHHH------GHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS-S
T ss_pred             CccccHhHhhh------hcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECCCc
Confidence            98653  2322      2467999998653  33444556666788999888764434

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.35  E-value=1.5e-05  Score=60.05  Aligned_cols=103  Identities=15%  Similarity=0.169  Sum_probs=70.4

Q ss_pred             HHHHHHHHhh----cCCCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCchhHHHHHHHHHHcC--CCCcEEEEec
Q 026461           59 GQLMAMLLRL----VNAKKTIEIGVFTGYSLLLTALTI---PEDGQITAIDVNRETYEIGLPIIKKAG--VDHKINFIES  129 (238)
Q Consensus        59 ~~~l~~l~~~----~~~~~vLeiG~G~G~~t~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~--~~~~v~~~~~  129 (238)
                      .+++..+...    .++..|+|+|||.|+.+..++..+   .+..+|++||.++..++.+.+..+..+  +..++++..+
T Consensus        10 ~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   89 (141)
T PF13679_consen   10 AELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQG   89 (141)
T ss_pred             HHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhcc
Confidence            4445555444    677899999999999999999832   136899999999999999999888877  4455666666


Q ss_pred             chhHHHHHHHhcccCCCCeeEEEEcCCccch-HHHHHHHHh
Q 026461          130 EALSVLDQLLKYSENEGSFDYAFVDADKDNY-CNYHERLMK  169 (238)
Q Consensus       130 d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~-~~~~~~~~~  169 (238)
                      +..+...        ....++++--+..... ...++...+
T Consensus        90 ~~~~~~~--------~~~~~~~vgLHaCG~Ls~~~l~~~~~  122 (141)
T PF13679_consen   90 DIADESS--------SDPPDILVGLHACGDLSDRALRLFIR  122 (141)
T ss_pred             chhhhcc--------cCCCeEEEEeecccchHHHHHHHHHH
Confidence            5543311        3566666655544443 334444433

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.31  E-value=2.3e-06  Score=67.10  Aligned_cols=99  Identities=18%  Similarity=0.280  Sum_probs=61.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhc-ccCCC
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKY-SENEG  146 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~-~~~~~  146 (238)
                      ++.++||+||++|+++..+++...+.++|+++|+.+.           ... ..+.++++|..+.  ...+... ....+
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~   90 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGE   90 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccchhhHHHhhhhhcccccc
Confidence            4579999999999999999998744689999999877           111 3466666665431  1111110 00136


Q ss_pred             CeeEEEEcCCcc--------c------hHHHHHHHHhccCCCeEEEEe
Q 026461          147 SFDYAFVDADKD--------N------YCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       147 ~fD~V~~d~~~~--------~------~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ++|+|++|..+.        .      ....+..+...|++||.+|+.
T Consensus        91 ~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K  138 (181)
T PF01728_consen   91 KFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK  138 (181)
T ss_dssp             SESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             CcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence            999999997211        0      122334445789999988875

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.30  E-value=1.2e-05  Score=73.39  Aligned_cols=100  Identities=18%  Similarity=0.151  Sum_probs=65.6

Q ss_pred             CcHhHHHHHHHHHhhc-------CCCEEEEEcccccHHHHHHHhhCCC-------CCEEEEEeCCchhHHHHHHHHHHcC
Q 026461           54 TAPDAGQLMAMLLRLV-------NAKKTIEIGVFTGYSLLLTALTIPE-------DGQITAIDVNRETYEIGLPIIKKAG  119 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~-------~~~~vLeiG~G~G~~t~~la~~~~~-------~~~v~~iD~~~~~~~~a~~~~~~~~  119 (238)
                      ..+..++++..++...       ...+|||.|||+|...+.++..++.       ...++++|+++..+..++.++...+
T Consensus         8 TP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~   87 (524)
T TIGR02987         8 TPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA   87 (524)
T ss_pred             CcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence            3455555555443211       3468999999999999998876641       2578999999999999999988765


Q ss_pred             CCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCC
Q 026461          120 VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD  156 (238)
Q Consensus       120 ~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~  156 (238)
                      . ..+++...|..........  ...+.||+|+.+.+
T Consensus        88 ~-~~~~i~~~d~l~~~~~~~~--~~~~~fD~IIgNPP  121 (524)
T TIGR02987        88 L-LEINVINFNSLSYVLLNIE--SYLDLFDIVITNPP  121 (524)
T ss_pred             C-CCceeeecccccccccccc--cccCcccEEEeCCC
Confidence            2 2355565554432110000  11368999998753

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.28  E-value=8e-06  Score=65.26  Aligned_cols=107  Identities=18%  Similarity=0.137  Sum_probs=74.2

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ...++.+||-+|+++|....+++....+.|.|.++|.++......-...++   .+|+--+.+|+...-.-.    .--+
T Consensus        70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~---R~NIiPIl~DAr~P~~Y~----~lv~  142 (229)
T PF01269_consen   70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK---RPNIIPILEDARHPEKYR----MLVE  142 (229)
T ss_dssp             S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH---STTEEEEES-TTSGGGGT----TTS-
T ss_pred             CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc---CCceeeeeccCCChHHhh----cccc
Confidence            355678999999999999999999998899999999999765554443333   256887888986532111    1146


Q ss_pred             CeeEEEEcCCccch-HHHHHHHHhccCCCeEEEEe
Q 026461          147 SFDYAFVDADKDNY-CNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       147 ~fD~V~~d~~~~~~-~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ..|+||.|-..++- .-+..++...||+||.+++.
T Consensus       143 ~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~  177 (229)
T PF01269_consen  143 MVDVIFQDVAQPDQARIAALNARHFLKPGGHLIIS  177 (229)
T ss_dssp             -EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccEEEecCCChHHHHHHHHHHHhhccCCcEEEEE
Confidence            99999999655444 44556677899999987763

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.27  E-value=9.4e-06  Score=76.55  Aligned_cols=98  Identities=11%  Similarity=0.142  Sum_probs=72.9

Q ss_pred             CcHhHHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhC---CC-----------------------------------
Q 026461           54 TAPDAGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTI---PE-----------------------------------   94 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~-~~~~~vLeiG~G~G~~t~~la~~~---~~-----------------------------------   94 (238)
                      +.+..+..+-.+..- .+...++|-+||+|...+..|...   ++                                   
T Consensus       173 l~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~  252 (702)
T PRK11783        173 LKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL  252 (702)
T ss_pred             CcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence            444444444445443 346789999999999998876521   11                                   


Q ss_pred             ---CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCC
Q 026461           95 ---DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD  156 (238)
Q Consensus        95 ---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~  156 (238)
                         ..+++|+|+++.+++.|++|+..+|+.+++++.++|+.+.....     ..++||+|+.+.+
T Consensus       253 ~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-----~~~~~d~IvtNPP  312 (702)
T PRK11783        253 AELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL-----PKGPTGLVISNPP  312 (702)
T ss_pred             cccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc-----ccCCCCEEEECCC
Confidence               23799999999999999999999999888999999998763221     1357999999864

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.26  E-value=1e-05  Score=64.18  Aligned_cols=103  Identities=19%  Similarity=0.233  Sum_probs=71.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH--HHHHHHhcccCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENE  145 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~l~~~~~~~~~~  145 (238)
                      ..+...|+|+|+..|.++..+++.+.+.++|+++|+.|-.           .. ..|.++++|+.+  .+..+... ...
T Consensus        43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~-~~V~~iq~d~~~~~~~~~l~~~-l~~  109 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PI-PGVIFLQGDITDEDTLEKLLEA-LGG  109 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cC-CCceEEeeeccCccHHHHHHHH-cCC
Confidence            3456899999999999999999998878889999998752           12 348888888753  22222221 124


Q ss_pred             CCeeEEEEcCCc--------cch------HHHHHHHHhccCCCeEEEEeccc
Q 026461          146 GSFDYAFVDADK--------DNY------CNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       146 ~~fD~V~~d~~~--------~~~------~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      .++|+|++|..+        .++      ...++.+...|+|||.+++....
T Consensus       110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq  161 (205)
T COG0293         110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ  161 (205)
T ss_pred             CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence            457999999643        111      22344445799999999987533

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=98.25  E-value=3.8e-06  Score=62.60  Aligned_cols=84  Identities=25%  Similarity=0.408  Sum_probs=58.8

Q ss_pred             EEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcC------Cc------cchHHHH
Q 026461           97 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA------DK------DNYCNYH  164 (238)
Q Consensus        97 ~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~------~~------~~~~~~~  164 (238)
                      +|+++|+.+++++.+++.+.+.++.++++++..+=..+...+.     .+++|+++++-      ++      ......+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~-----~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al   75 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIP-----EGPVDAAIFNLGYLPGGDKSITTKPETTLKAL   75 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT-------S--EEEEEEEESB-CTS-TTSB--HHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCc-----cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHH
Confidence            6899999999999999999999998899999865544433331     24899998872      11      1235677


Q ss_pred             HHHHhccCCCeEEEEeccccCcc
Q 026461          165 ERLMKLLKVGGIAVYDNTLWGGT  187 (238)
Q Consensus       165 ~~~~~~L~~gG~lv~~~~~~~g~  187 (238)
                      +.++++|++||+|++  +.++|+
T Consensus        76 ~~al~lL~~gG~i~i--v~Y~GH   96 (140)
T PF06962_consen   76 EAALELLKPGGIITI--VVYPGH   96 (140)
T ss_dssp             HHHHHHEEEEEEEEE--EE--ST
T ss_pred             HHHHHhhccCCEEEE--EEeCCC
Confidence            888899999999988  567776

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=98.25  E-value=2.5e-05  Score=61.87  Aligned_cols=105  Identities=19%  Similarity=0.278  Sum_probs=84.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCC--CcEEEEecchhHHHHHHHhcccCCC
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      .+..+||++|-|-|.....+.++-|  .+-+-||.+|+.++..+++    |..  .+|-++.+--++.++.+.     ++
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p--~~H~IiE~hp~V~krmr~~----gw~ek~nViil~g~WeDvl~~L~-----d~  168 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPP--DEHWIIEAHPDVLKRMRDW----GWREKENVIILEGRWEDVLNTLP-----DK  168 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCC--cceEEEecCHHHHHHHHhc----ccccccceEEEecchHhhhcccc-----cc
Confidence            6788999999999999988888654  4567799999998877765    333  568888998888888885     56


Q ss_pred             CeeEEEEcCCcc---chHHHHHHHHhccCCCeEEEEecccc
Q 026461          147 SFDYAFVDADKD---NYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       147 ~fD~V~~d~~~~---~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      .||=|+-|...+   +..++.+.+.++|||+|++-+-|.+-
T Consensus       169 ~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~  209 (271)
T KOG1709|consen  169 HFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGLG  209 (271)
T ss_pred             CcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCcc
Confidence            799999997543   34567788889999999998876664

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.22  E-value=4.3e-06  Score=62.83  Aligned_cols=58  Identities=19%  Similarity=0.253  Sum_probs=50.0

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           73 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      .++|||||.|..+.+++...+ ..+|+++|+++.+++.++++++.+++. ++++++....
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~   58 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVG   58 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeee
Confidence            389999999999999998876 679999999999999999999988875 4887776543

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.21  E-value=2.4e-06  Score=67.92  Aligned_cols=105  Identities=21%  Similarity=0.205  Sum_probs=64.2

Q ss_pred             CCCEEEEEcccccHHHHH----HHhhC----CCCCEEEEEeCCchhHHHHHHHH--------------HH-----cC---
Q 026461           70 NAKKTIEIGVFTGYSLLL----TALTI----PEDGQITAIDVNRETYEIGLPII--------------KK-----AG---  119 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~----la~~~----~~~~~v~~iD~~~~~~~~a~~~~--------------~~-----~~---  119 (238)
                      ++-+|+-+||++|-=+-.    +.+..    +...+|+|+|+|+.+++.|++-.              .+     .+   
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            556899999999974333    33311    11358999999999999996521              11     11   


Q ss_pred             -----CCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCc-----cchHHHHHHHHhccCCCeEEEEec
Q 026461          120 -----VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       120 -----~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                           +..+|+|...|..+..+.       .+.||+||+-...     ......++.+.+.|+|||+|++..
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~-------~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~  175 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPP-------FGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH  175 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S-------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred             eEChHHcCceEEEecccCCCCcc-------cCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence                 125789999998872222       5899999997642     333677888899999999999854

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.20  E-value=0.0001  Score=62.90  Aligned_cols=108  Identities=11%  Similarity=0.059  Sum_probs=76.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEE--EecchhHHHHHHHhcccC
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVDHKINF--IESEALSVLDQLLKYSEN  144 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~--~~~d~~~~l~~~~~~~~~  144 (238)
                      ++..++|+|||+|.-+..|++++.+   ..+++++|+|.+.++.+.+.+....++ .+++  +.+|..+.+..+... ..
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p-~l~v~~l~gdy~~~l~~l~~~-~~  153 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFS-HVRCAGLLGTYDDGLAWLKRP-EN  153 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCC-CeEEEEEEecHHHHHhhcccc-cc
Confidence            4558999999999999999888742   367999999999999999998744443 3555  788877765544210 01


Q ss_pred             CCCeeEEEEcC-C-----ccchHHHHHHHHh-ccCCCeEEEE
Q 026461          145 EGSFDYAFVDA-D-----KDNYCNYHERLMK-LLKVGGIAVY  179 (238)
Q Consensus       145 ~~~fD~V~~d~-~-----~~~~~~~~~~~~~-~L~~gG~lv~  179 (238)
                      .....+++.-+ .     +.....+++.+.+ .|+|||.+++
T Consensus       154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi  195 (319)
T TIGR03439       154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI  195 (319)
T ss_pred             cCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence            23456665533 2     3334578888888 9999998877

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=98.19  E-value=1.7e-05  Score=69.19  Aligned_cols=104  Identities=16%  Similarity=0.206  Sum_probs=81.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCC-cEEEEecchhHHHHHHHhcccCCCCe
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .+-+|||.=+|+|.=++..+..++...+|+.-|+++++++..++|++.+++.+ ++++.+.|+...+...      ...|
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~------~~~f  122 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSR------QERF  122 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHS------TT-E
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhc------cccC
Confidence            34589999999999999999887656799999999999999999999999987 7999999998887422      5899


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      |+|=+|.. .....|++.+.+.++.||+|.+-
T Consensus       123 D~IDlDPf-GSp~pfldsA~~~v~~gGll~vT  153 (377)
T PF02005_consen  123 DVIDLDPF-GSPAPFLDSALQAVKDGGLLCVT  153 (377)
T ss_dssp             EEEEE--S-S--HHHHHHHHHHEEEEEEEEEE
T ss_pred             CEEEeCCC-CCccHhHHHHHHHhhcCCEEEEe
Confidence            99999963 34478999999999999999984

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.19  E-value=4.2e-05  Score=63.55  Aligned_cols=103  Identities=19%  Similarity=0.218  Sum_probs=71.9

Q ss_pred             CCEEEEEcccccH----HHHHHHhhCCC----CCEEEEEeCCchhHHHHHHHHHH-----cC------------------
Q 026461           71 AKKTIEIGVFTGY----SLLLTALTIPE----DGQITAIDVNRETYEIGLPIIKK-----AG------------------  119 (238)
Q Consensus        71 ~~~vLeiG~G~G~----~t~~la~~~~~----~~~v~~iD~~~~~~~~a~~~~~~-----~~------------------  119 (238)
                      +-+|+-+||++|-    .++.+.+.++.    ..+|+++|+|...++.|+.-.=.     .+                  
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            6799999999996    34445555542    57899999999999998642100     11                  


Q ss_pred             -----CCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCC-----ccchHHHHHHHHhccCCCeEEEEe
Q 026461          120 -----VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       120 -----~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                           +...|.|...|..+..+ .      .+.||+||+-..     ...-...++.....|+|||+|++.
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~-~------~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG  240 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSP-F------LGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG  240 (268)
T ss_pred             EEChHHhcccEEeecCCCCCcc-c------cCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence                 11346666666655432 2      578999998643     333467788888999999999985

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.17  E-value=4.5e-06  Score=64.67  Aligned_cols=100  Identities=9%  Similarity=0.140  Sum_probs=77.1

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeE
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  150 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~  150 (238)
                      ...+.|+|+|+|..+...+..   ..+|++||.+|...+.|.+|+.-.|. .+++++.+|+.+.  .+       ...|+
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y--~f-------e~ADv   99 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDY--DF-------ENADV   99 (252)
T ss_pred             hhceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccc--cc-------cccce
Confidence            378999999999999888876   35999999999999999999866665 5699999999886  22       56788


Q ss_pred             EEEcC-----CccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          151 AFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       151 V~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      |++..     -.+.....+..++..|+-++.++-..+.
T Consensus       100 vicEmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq~v~  137 (252)
T COG4076         100 VICEMLDTALIEEKQVPVINAVLEFLRYDPTIIPQEVR  137 (252)
T ss_pred             eHHHHhhHHhhcccccHHHHHHHHHhhcCCccccHHHh
Confidence            87542     1222345566777788988888865554

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.14  E-value=1.6e-05  Score=66.26  Aligned_cols=120  Identities=12%  Similarity=0.063  Sum_probs=81.3

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      +++...+-+...+...+...|||||+|.|..|..|++..   .+++++|+++.+++..++.+.   ..++++++.+|+.+
T Consensus        14 ~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~   87 (262)
T PF00398_consen   14 VDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLK   87 (262)
T ss_dssp             EHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTT
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh---hcccceeeecchhc
Confidence            455666666666666688899999999999999999875   699999999999999988764   34679999999987


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccC---CCeEEEEeccc
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLK---VGGIAVYDNTL  183 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~---~gG~lv~~~~~  183 (238)
                      +-....    -......|+.+.+......++..+...-+   ...++++..-.
T Consensus        88 ~~~~~~----~~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq~e~  136 (262)
T PF00398_consen   88 WDLYDL----LKNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQKEV  136 (262)
T ss_dssp             SCGGGH----CSSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEEHHH
T ss_pred             cccHHh----hcCCceEEEEEecccchHHHHHHHhhcccccccceEEEEehhh
Confidence            621100    01344566666554444455555554222   34566665433

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=98.13  E-value=6.7e-05  Score=59.78  Aligned_cols=102  Identities=18%  Similarity=0.171  Sum_probs=82.3

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeE
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  150 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~  150 (238)
                      ..++.||||--||.+.++....+ ...+++.|+++..++.|.+++.++++.++++...+|.+..+..       ...+|.
T Consensus        17 ~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~-------~d~~d~   88 (226)
T COG2384          17 GARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL-------EDEIDV   88 (226)
T ss_pred             CCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc-------cCCcCE
Confidence            34499999999999999999876 7899999999999999999999999999999999998655442       358999


Q ss_pred             EEEcC-CccchHHHHHHHHhccCCCeEEEEe
Q 026461          151 AFVDA-DKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       151 V~~d~-~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      |++.+ +-....++++.-.+.|+.--.+++.
T Consensus        89 ivIAGMGG~lI~~ILee~~~~l~~~~rlILQ  119 (226)
T COG2384          89 IVIAGMGGTLIREILEEGKEKLKGVERLILQ  119 (226)
T ss_pred             EEEeCCcHHHHHHHHHHhhhhhcCcceEEEC
Confidence            99875 3334567777777777643455543

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.12  E-value=0.00011  Score=63.44  Aligned_cols=120  Identities=16%  Similarity=0.162  Sum_probs=87.8

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCC---C----------------------------CC------
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP---E----------------------------DG------   96 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~---~----------------------------~~------   96 (238)
                      +....+..+-.+..-.+...++|-=||+|...+..|...+   |                            .+      
T Consensus       175 LketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~  254 (381)
T COG0116         175 LKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKEL  254 (381)
T ss_pred             chHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCcc
Confidence            3444444444455444556899999999999988776542   1                            11      


Q ss_pred             -EEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCc-----------cchHHHH
Q 026461           97 -QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----------DNYCNYH  164 (238)
Q Consensus        97 -~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~-----------~~~~~~~  164 (238)
                       .++|+|+++.+++.|+.|...+|+.+.|+|.++|+..+-+.       .+.+|+|+++.+-           ..|..+.
T Consensus       255 ~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~-------~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg  327 (381)
T COG0116         255 PIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP-------LEEYGVVISNPPYGERLGSEALVAKLYREFG  327 (381)
T ss_pred             ceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC-------CCcCCEEEeCCCcchhcCChhhHHHHHHHHH
Confidence             47899999999999999999999999999999999776332       1699999998642           1345555


Q ss_pred             HHHHhccCCCeEEEEe
Q 026461          165 ERLMKLLKVGGIAVYD  180 (238)
Q Consensus       165 ~~~~~~L~~gG~lv~~  180 (238)
                      +.+.+.++..+..|+.
T Consensus       328 ~~lk~~~~~ws~~v~t  343 (381)
T COG0116         328 RTLKRLLAGWSRYVFT  343 (381)
T ss_pred             HHHHHHhcCCceEEEE
Confidence            6666777777777663

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=98.10  E-value=6.3e-05  Score=58.56  Aligned_cols=153  Identities=18%  Similarity=0.150  Sum_probs=93.9

Q ss_pred             HhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCC---CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           56 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP---EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      +..--..+.++-..+|..|+|+|+-.|++++++|..+-   ...+|+++|++-...+-+...      .++|.|+.++..
T Consensus        55 p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~egss~  128 (237)
T COG3510          55 PSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEGSST  128 (237)
T ss_pred             HHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEeCCCC
Confidence            34444556666677999999999999999999997542   236899999986654433221      257999999876


Q ss_pred             HH--HHHHHhcccCCCCeeEEEEcC--CccchHHHHHHHHhccCCCeEEEEeccccCccccCCCCCCCCCcccchHHHHH
Q 026461          133 SV--LDQLLKYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAIL  208 (238)
Q Consensus       133 ~~--l~~~~~~~~~~~~fD~V~~d~--~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  208 (238)
                      +.  ..+...- .+.-+-=+|+.|+  .+.+...-++.+.++|.-|-++++.|....+... +..++.. -.+ -   .+
T Consensus       129 dpai~eqi~~~-~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~-~~~p~~~-g~g-P---~~  201 (237)
T COG3510         129 DPAIAEQIRRL-KNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLPG-PVLPWRF-GGG-P---YE  201 (237)
T ss_pred             CHHHHHHHHHH-hcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCCC-cccchhc-CCC-h---HH
Confidence            52  1111100 0112222444554  3444556667777999999999998887666532 2222211 111 1   44


Q ss_pred             HHHHHhhcCC-Cee
Q 026461          209 DLNRSLADDP-RVQ  221 (238)
Q Consensus       209 ~~~~~l~~~~-~~~  221 (238)
                      ...++++.+| +|+
T Consensus       202 AVe~ylr~~p~~yE  215 (237)
T COG3510         202 AVEAYLREFPQDYE  215 (237)
T ss_pred             HHHHHHHhCCcccc
Confidence            5566677788 554

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=98.05  E-value=1.4e-05  Score=62.72  Aligned_cols=103  Identities=17%  Similarity=0.212  Sum_probs=77.2

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC------CCCcEEEEecchhHHHHHHHhcccCC
Q 026461           72 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG------VDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      -.+.|||||.|+..+.++..+| +.-+.|.||--...++.++.+....      .-.++.++..++...++.+...    
T Consensus        62 vefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~k----  136 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEK----  136 (249)
T ss_pred             ceEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhh----
Confidence            4689999999999999999998 8899999998888888888887654      1245888999999998887543    


Q ss_pred             CCeeEEEEcCCccc-----------hHHHHHHHHhccCCCeEEEE
Q 026461          146 GSFDYAFVDADKDN-----------YCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       146 ~~fD~V~~d~~~~~-----------~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ++..-.|+--+.++           ...++....-+|++||.+..
T Consensus       137 gqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yt  181 (249)
T KOG3115|consen  137 GQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYT  181 (249)
T ss_pred             cccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEE
Confidence            55554443211111           24567777789999997764

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.05  E-value=2.9e-05  Score=61.54  Aligned_cols=128  Identities=15%  Similarity=0.204  Sum_probs=77.2

Q ss_pred             cCCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEE
Q 026461           46 DHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKIN  125 (238)
Q Consensus        46 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~  125 (238)
                      ...||..   | ...++..+....+...|.|.|||.+..+..    ++..-+|.+.|+...              .+  .
T Consensus        52 v~~WP~n---P-vd~iI~~l~~~~~~~viaD~GCGdA~la~~----~~~~~~V~SfDLva~--------------n~--~  107 (219)
T PF05148_consen   52 VKKWPVN---P-VDVIIEWLKKRPKSLVIADFGCGDAKLAKA----VPNKHKVHSFDLVAP--------------NP--R  107 (219)
T ss_dssp             HCTSSS----H-HHHHHHHHCTS-TTS-EEEES-TT-HHHHH------S---EEEEESS-S--------------ST--T
T ss_pred             HhcCCCC---c-HHHHHHHHHhcCCCEEEEECCCchHHHHHh----cccCceEEEeeccCC--------------CC--C
Confidence            3457653   2 445666666665567999999999988744    333457999999643              12  3


Q ss_pred             EEecchhHHHHHHHhcccCCCCeeEEEEcC--CccchHHHHHHHHhccCCCeEEEEeccccCccccCCCCCCCCCcccch
Q 026461          126 FIESEALSVLDQLLKYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSS  203 (238)
Q Consensus       126 ~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~--~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~  203 (238)
                      +..+|+..+.  +     +.++.|++++.-  --.++..++.++.|.||+||.+.+..+..+=                 
T Consensus       108 Vtacdia~vP--L-----~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf-----------------  163 (219)
T PF05148_consen  108 VTACDIANVP--L-----EDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRF-----------------  163 (219)
T ss_dssp             EEES-TTS-S---------TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG------------------
T ss_pred             EEEecCccCc--C-----CCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccC-----------------
Confidence            5667876552  1     158999998764  3457899999999999999999998776321                 


Q ss_pred             HHHHHHHHHHhhcCCCeeEE
Q 026461          204 RQAILDLNRSLADDPRVQLS  223 (238)
Q Consensus       204 ~~~~~~~~~~l~~~~~~~~~  223 (238)
                       ..++.|.+.+..- +|...
T Consensus       164 -~~~~~F~~~~~~~-GF~~~  181 (219)
T PF05148_consen  164 -ENVKQFIKALKKL-GFKLK  181 (219)
T ss_dssp             -S-HHHHHHHHHCT-TEEEE
T ss_pred             -cCHHHHHHHHHHC-CCeEE
Confidence             1277888777654 45443

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=98.02  E-value=2.5e-05  Score=66.36  Aligned_cols=96  Identities=14%  Similarity=0.174  Sum_probs=74.4

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeE
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  150 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~  150 (238)
                      -...+|+|.|.|..+..++..+|   +|-+++.+...+..+..++. .|    |+.+-+|..+..          ++-|+
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~----------P~~da  239 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDT----------PKGDA  239 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-CC----cceecccccccC----------CCcCe
Confidence            36899999999999999999777   68999999888888887764 33    777888876653          34468


Q ss_pred             EEEc-----CCccchHHHHHHHHhccCCCeEEEEecccc
Q 026461          151 AFVD-----ADKDNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       151 V~~d-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      ||+-     -.-++...++++|++.|+|||.|++-+...
T Consensus       240 I~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~  278 (342)
T KOG3178|consen  240 IWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVT  278 (342)
T ss_pred             EEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccC
Confidence            8864     234556789999999999998777655543

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=98.01  E-value=0.00012  Score=61.17  Aligned_cols=86  Identities=14%  Similarity=0.156  Sum_probs=72.0

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..+....+|+.-|.|+.+..+++.+++.++++++|.++.+++.|++.+...+  +++.+++++..++...+...  ..++
T Consensus        21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~--~i~~   96 (314)
T COG0275          21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKEL--GIGK   96 (314)
T ss_pred             cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhc--CCCc
Confidence            4456899999999999999999999888999999999999999999987765  78999999887765555322  2569


Q ss_pred             eeEEEEcCCc
Q 026461          148 FDYAFVDADK  157 (238)
Q Consensus       148 fD~V~~d~~~  157 (238)
                      +|-|++|.+.
T Consensus        97 vDGiL~DLGV  106 (314)
T COG0275          97 VDGILLDLGV  106 (314)
T ss_pred             eeEEEEeccC
Confidence            9999998543

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.98  E-value=3.7e-05  Score=64.43  Aligned_cols=105  Identities=10%  Similarity=0.087  Sum_probs=66.9

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ...|.+|||+|||.|..+....+.++.-.+++++|.|+.+.+.++..+............ ..   .....    ....+
T Consensus        31 ~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~-~~---~~~~~----~~~~~  102 (274)
T PF09243_consen   31 DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWR-RV---LYRDF----LPFPP  102 (274)
T ss_pred             CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhh-hh---hhccc----ccCCC
Confidence            357889999999999888777777775678999999999999999877654321111111 11   11110    01234


Q ss_pred             eeEEEEcCC-----ccchHHHHHHHHhccCCCeEEEEec
Q 026461          148 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       148 fD~V~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      .|+|++...     ......+++.++..+++ -+|+++.
T Consensus       103 ~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~-~LVlVEp  140 (274)
T PF09243_consen  103 DDLVIASYVLNELPSAARAELVRSLWNKTAP-VLVLVEP  140 (274)
T ss_pred             CcEEEEehhhhcCCchHHHHHHHHHHHhccC-cEEEEcC
Confidence            599987642     23345677777777766 4444443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.97  E-value=3.9e-05  Score=64.81  Aligned_cols=96  Identities=17%  Similarity=0.152  Sum_probs=66.0

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHH
Q 026461           58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ  137 (238)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~  137 (238)
                      ..+++..|. ..++..++|+..|.|+.+..+++.+++ ++|+|+|.++++++.+++.+...  .+++.+++++..++...
T Consensus         9 l~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~   84 (310)
T PF01795_consen    9 LKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEY   84 (310)
T ss_dssp             HHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHH
T ss_pred             HHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHH
Confidence            344555444 456779999999999999999999985 99999999999999999877644  57899999988776554


Q ss_pred             HHhcccCCCCeeEEEEcCCcc
Q 026461          138 LLKYSENEGSFDYAFVDADKD  158 (238)
Q Consensus       138 ~~~~~~~~~~fD~V~~d~~~~  158 (238)
                      +... ....++|-|++|.+.+
T Consensus        85 l~~~-~~~~~~dgiL~DLGvS  104 (310)
T PF01795_consen   85 LKEL-NGINKVDGILFDLGVS  104 (310)
T ss_dssp             HHHT-TTTS-EEEEEEE-S--
T ss_pred             HHHc-cCCCccCEEEEccccC
Confidence            4322 1246999999996544

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.88  E-value=0.00015  Score=57.01  Aligned_cols=118  Identities=18%  Similarity=0.158  Sum_probs=84.0

Q ss_pred             CcHhHHHHHHHHH--hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461           54 TAPDAGQLMAMLL--RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA  131 (238)
Q Consensus        54 ~~~~~~~~l~~l~--~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (238)
                      -+.-.+.++.-|-  ...+..+||=+|+.+|....+++...+ .+.+.++|.++......-..+.+   .+|+--+.+|+
T Consensus        58 RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~---R~Ni~PIL~DA  133 (231)
T COG1889          58 RSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK---RPNIIPILEDA  133 (231)
T ss_pred             hhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh---CCCceeeeccc
Confidence            3444555555553  356778999999999999999999988 89999999999876655544443   34577788888


Q ss_pred             hHHHHHHHhcccCCCCeeEEEEcCCccch-HHHHHHHHhccCCCeEEEE
Q 026461          132 LSVLDQLLKYSENEGSFDYAFVDADKDNY-CNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       132 ~~~l~~~~~~~~~~~~fD~V~~d~~~~~~-~~~~~~~~~~L~~gG~lv~  179 (238)
                      .....-..    --+..|+|+.|-..++. .-+..++...|++||.+++
T Consensus       134 ~~P~~Y~~----~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i  178 (231)
T COG1889         134 RKPEKYRH----LVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVI  178 (231)
T ss_pred             CCcHHhhh----hcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEE
Confidence            65322111    14689999999655444 4455677789999995554

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.86  E-value=0.00011  Score=55.69  Aligned_cols=121  Identities=19%  Similarity=0.201  Sum_probs=75.5

Q ss_pred             cCcHhHHHHHHHHHh---hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCC--CcEEE
Q 026461           53 GTAPDAGQLMAMLLR---LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD--HKINF  126 (238)
Q Consensus        53 ~~~~~~~~~l~~l~~---~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~v~~  126 (238)
                      ++.|..+.+....++   ...+++|||+|.| +|..++.+|...+ ...|...|-+++.++..++....+-.+  .++..
T Consensus         9 ciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~-~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~v   87 (201)
T KOG3201|consen    9 CIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAP-DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCV   87 (201)
T ss_pred             EecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecC-CceEEEecCCHHHHHHHHHHHhcccccccceehh
Confidence            445544444444333   2345789999998 7778888888776 788999999999999998877554222  11211


Q ss_pred             EecchhHHHHHHHhcccCCCCeeEEEEc-CC--ccchHHHHHHHHhccCCCeEEEE
Q 026461          127 IESEALSVLDQLLKYSENEGSFDYAFVD-AD--KDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       127 ~~~d~~~~l~~~~~~~~~~~~fD~V~~d-~~--~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      +.-+...  ....+   ....||+|+.. +.  .+......+.+..+|+|.|.-++
T Consensus        88 lrw~~~~--aqsq~---eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~  138 (201)
T KOG3201|consen   88 LRWLIWG--AQSQQ---EQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALL  138 (201)
T ss_pred             hHHHHhh--hHHHH---hhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeE
Confidence            1111111  11111   14699999864 31  33446677888899999887544

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.82  E-value=0.00017  Score=67.83  Aligned_cols=104  Identities=20%  Similarity=0.149  Sum_probs=72.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-------CC----CCEEEEEeCCchhHHHH--------------HHHHHH-----cC
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTI-------PE----DGQITAIDVNRETYEIG--------------LPIIKK-----AG  119 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~-------~~----~~~v~~iD~~~~~~~~a--------------~~~~~~-----~~  119 (238)
                      ..-+|+|+|-|+|++.+...+.+       ++    .-+++++|..|-..+..              ++.+..     .|
T Consensus        57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g  136 (662)
T PRK01747         57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG  136 (662)
T ss_pred             CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence            34689999999999887766554       21    35899999866322222              222222     12


Q ss_pred             C------CC--cEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCcc------chHHHHHHHHhccCCCeEEEE
Q 026461          120 V------DH--KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------NYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       120 ~------~~--~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~------~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      +      ..  .+++..+|+.+.++.+      ...+|++|+|+..+      ...++|..+.+++++||+++-
T Consensus       137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~------~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t  204 (662)
T PRK01747        137 CHRLLFDDGRVTLDLWFGDANELLPQL------DARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT  204 (662)
T ss_pred             ceEEEecCCcEEEEEEecCHHHHHHhc------cccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence            1      12  3457889999999887      46799999996321      236889999999999999885

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.79  E-value=0.0034  Score=51.06  Aligned_cols=102  Identities=21%  Similarity=0.295  Sum_probs=63.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      ..+++||=+|=.--.+....+...  ..+|+.+|+++..++..++..++.|+.  ++..+.|..+.+|.-.     .++|
T Consensus        43 L~gk~il~lGDDDLtSlA~al~~~--~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~-----~~~f  113 (243)
T PF01861_consen   43 LEGKRILFLGDDDLTSLALALTGL--PKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEEL-----RGKF  113 (243)
T ss_dssp             STT-EEEEES-TT-HHHHHHHHT----SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTT-----SS-B
T ss_pred             ccCCEEEEEcCCcHHHHHHHhhCC--CCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHH-----hcCC
Confidence            367899999976655543333333  479999999999999999999999984  9999999999877521     5899


Q ss_pred             eEEEEcCC--ccchHHHHHHHHhccCCCe-EEEE
Q 026461          149 DYAFVDAD--KDNYCNYHERLMKLLKVGG-IAVY  179 (238)
Q Consensus       149 D~V~~d~~--~~~~~~~~~~~~~~L~~gG-~lv~  179 (238)
                      |++|.|.+  .+...-|+......|+..| ...+
T Consensus       114 D~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~  147 (243)
T PF01861_consen  114 DVFFTDPPYTPEGLKLFLSRGIEALKGEGCAGYF  147 (243)
T ss_dssp             SEEEE---SSHHHHHHHHHHHHHTB-STT-EEEE
T ss_pred             CEEEeCCCCCHHHHHHHHHHHHHHhCCCCceEEE
Confidence            99999974  4556778888888888766 4443

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.76  E-value=0.0017  Score=52.57  Aligned_cols=147  Identities=18%  Similarity=0.105  Sum_probs=95.5

Q ss_pred             CcHhHHHHHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEE-EEec
Q 026461           54 TAPDAGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKIN-FIES  129 (238)
Q Consensus        54 ~~~~~~~~l~~l~~---~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~-~~~~  129 (238)
                      +++..-++...+-.   ..+++.+||||+.+|++|-.+++.-  ..+|+++|..-..+.+--+      .+.|+. +...
T Consensus        60 VSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~kLR------~d~rV~~~E~t  131 (245)
T COG1189          60 VSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWKLR------NDPRVIVLERT  131 (245)
T ss_pred             cccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHhHh------cCCcEEEEecC
Confidence            45555556555543   3467899999999999999999852  4799999997654433221      134554 4556


Q ss_pred             chhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE--e--------ccccCccccCCCCCCCCCc
Q 026461          130 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY--D--------NTLWGGTVAVPEEQVPDHF  199 (238)
Q Consensus       130 d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~--~--------~~~~~g~~~~~~~~~~~~~  199 (238)
                      |+..+-+...     .+..|++++|-.--.....+..+..++++++.++.  .        .+--.|.+.++..      
T Consensus       132 N~r~l~~~~~-----~~~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~------  200 (245)
T COG1189         132 NVRYLTPEDF-----TEKPDLIVIDVSFISLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKL------  200 (245)
T ss_pred             ChhhCCHHHc-----ccCCCeEEEEeehhhHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcch------
Confidence            6666533321     45899999997766777888888999999886665  1        1112333333322      


Q ss_pred             ccchHHHHHHHHHHhhcCCCeeEE
Q 026461          200 RGSSRQAILDLNRSLADDPRVQLS  223 (238)
Q Consensus       200 ~~~~~~~~~~~~~~l~~~~~~~~~  223 (238)
                         ....+..+.++..+. +|++.
T Consensus       201 ---~~~v~~~i~~~~~~~-g~~~~  220 (245)
T COG1189         201 ---HAEVLSKIENFAKEL-GFQVK  220 (245)
T ss_pred             ---HHHHHHHHHHHHhhc-CcEEe
Confidence               344566666777666 66654

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.75  E-value=0.00024  Score=60.63  Aligned_cols=87  Identities=11%  Similarity=0.161  Sum_probs=62.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .+..++|||||++|++|..+++.   +.+|++||..+-.     ..+..   .++|+.+.+|.....+.       .+++
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~l~-----~~L~~---~~~V~h~~~d~fr~~p~-------~~~v  271 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGPMA-----QSLMD---TGQVEHLRADGFKFRPP-------RKNV  271 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechhcC-----HhhhC---CCCEEEEeccCcccCCC-------CCCC
Confidence            46779999999999999999985   5699999965421     11222   35799999998777542       4789


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCC
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVG  174 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~g  174 (238)
                      |++++|... ......+.+.+.|..|
T Consensus       272 DwvVcDmve-~P~rva~lm~~Wl~~g  296 (357)
T PRK11760        272 DWLVCDMVE-KPARVAELMAQWLVNG  296 (357)
T ss_pred             CEEEEeccc-CHHHHHHHHHHHHhcC
Confidence            999999643 3345556666677665

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.73  E-value=0.00035  Score=51.72  Aligned_cols=104  Identities=21%  Similarity=0.224  Sum_probs=67.7

Q ss_pred             EEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH-HHHHHhcccCC-CCeeEE
Q 026461           74 TIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENE-GSFDYA  151 (238)
Q Consensus        74 vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-l~~~~~~~~~~-~~fD~V  151 (238)
                      ++|+|||+|..+ .++...+....++++|+++.++..++..... .....+.+..++.... ++-      .. ..||++
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~d~~  123 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPF------EDSASFDLV  123 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCC------CCCCceeEE
Confidence            999999999987 4444333124899999999988885544432 2111167777776542 221      12 379999


Q ss_pred             EEcCCccc--hHHHHHHHHhccCCCeEEEEeccccC
Q 026461          152 FVDADKDN--YCNYHERLMKLLKVGGIAVYDNTLWG  185 (238)
Q Consensus       152 ~~d~~~~~--~~~~~~~~~~~L~~gG~lv~~~~~~~  185 (238)
                      ........  ....+..+.+.++++|.+++......
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  159 (257)
T COG0500         124 ISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD  159 (257)
T ss_pred             eeeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence            43322111  46788888999999999888766543

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.71  E-value=0.00056  Score=58.62  Aligned_cols=101  Identities=15%  Similarity=0.205  Sum_probs=84.2

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeE
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  150 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~  150 (238)
                      +.+|+|.=+|+|.=++.++...+ ..+|+.=|++|++++.+++|+..+... ....++.|+...+-+.      ...||+
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~N~~~-~~~v~n~DAN~lm~~~------~~~fd~  124 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRLNSGE-DAEVINKDANALLHEL------HRAFDV  124 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHhcCcc-cceeecchHHHHHHhc------CCCccE
Confidence            88999999999999999998876 349999999999999999999987433 3566668988887765      589999


Q ss_pred             EEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          151 AFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       151 V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      |=+|.. ....+|++.+.+.++.||++.+-
T Consensus       125 IDiDPF-GSPaPFlDaA~~s~~~~G~l~vT  153 (380)
T COG1867         125 IDIDPF-GSPAPFLDAALRSVRRGGLLCVT  153 (380)
T ss_pred             EecCCC-CCCchHHHHHHHHhhcCCEEEEE
Confidence            988852 34578889999999999999983

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=97.68  E-value=5.1e-05  Score=60.81  Aligned_cols=98  Identities=12%  Similarity=0.059  Sum_probs=74.3

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeE
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  150 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~  150 (238)
                      ...++||||+.|+...++....  -.+++.+|.|-.+++.++..-. .+  -.+...++|- +.++      +.+.++|+
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qd-p~--i~~~~~v~DE-E~Ld------f~ens~DL  140 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQD-PS--IETSYFVGDE-EFLD------FKENSVDL  140 (325)
T ss_pred             CcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCC-Cc--eEEEEEecch-hccc------ccccchhh
Confidence            4579999999999998887642  4689999999999998876421 11  2345566663 4444      23689999


Q ss_pred             EEEc---CCccchHHHHHHHHhccCCCeEEEEe
Q 026461          151 AFVD---ADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       151 V~~d---~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      |+..   +|..+.+..+..+...|||+|.++..
T Consensus       141 iisSlslHW~NdLPg~m~~ck~~lKPDg~Fias  173 (325)
T KOG2940|consen  141 IISSLSLHWTNDLPGSMIQCKLALKPDGLFIAS  173 (325)
T ss_pred             hhhhhhhhhhccCchHHHHHHHhcCCCccchhH
Confidence            9876   57778888999999999999998863

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=97.68  E-value=0.00025  Score=57.86  Aligned_cols=97  Identities=14%  Similarity=0.137  Sum_probs=72.2

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHH
Q 026461           58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ  137 (238)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~  137 (238)
                      .-.++..+-.......|.|+|||-+..+.      ....+|+++|+.+-                +-+++.+|+..+.- 
T Consensus       168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~------~~~~kV~SfDL~a~----------------~~~V~~cDm~~vPl-  224 (325)
T KOG3045|consen  168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS------SERHKVHSFDLVAV----------------NERVIACDMRNVPL-  224 (325)
T ss_pred             HHHHHHHHHhCcCceEEEecccchhhhhh------ccccceeeeeeecC----------------CCceeeccccCCcC-
Confidence            34566777666677789999999988754      12468999998532                24667788877421 


Q ss_pred             HHhcccCCCCeeEEEEcC--CccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          138 LLKYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       138 ~~~~~~~~~~fD~V~~d~--~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                            .+++.|+++...  --.++..++.++.+.|++||.+.+..+.
T Consensus       225 ------~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~  266 (325)
T KOG3045|consen  225 ------EDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVK  266 (325)
T ss_pred             ------ccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehh
Confidence                  168999988653  3457889999999999999999987765

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.67  E-value=8.8e-05  Score=62.38  Aligned_cols=81  Identities=12%  Similarity=0.297  Sum_probs=48.5

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc-CCCCcEEEEecchh-HHHHHHHhcccCCCCee
Q 026461           72 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEAL-SVLDQLLKYSENEGSFD  149 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~v~~~~~d~~-~~l~~~~~~~~~~~~fD  149 (238)
                      -++||||||....=-.|+.... +=+++|.|+++..++.|++++..+ ++.++|+++..... .++..+..   ..+.||
T Consensus       104 v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~---~~e~~d  179 (299)
T PF05971_consen  104 VRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ---PNERFD  179 (299)
T ss_dssp             -EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT-----S-EE
T ss_pred             eEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhc---ccceee
Confidence            4799999976543222332222 568999999999999999999999 99999998755322 23332221   146899


Q ss_pred             EEEEcCC
Q 026461          150 YAFVDAD  156 (238)
Q Consensus       150 ~V~~d~~  156 (238)
                      +..++.+
T Consensus       180 ftmCNPP  186 (299)
T PF05971_consen  180 FTMCNPP  186 (299)
T ss_dssp             EEEE---
T ss_pred             EEecCCc
Confidence            9998754

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.67  E-value=0.00015  Score=56.75  Aligned_cols=73  Identities=18%  Similarity=0.248  Sum_probs=58.7

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..+.++|||.|+|+|..++..+..-  ...|+..|++|-....++-|.+.++.  .+.+...|..-          ++..
T Consensus        77 tVrgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g----------~~~~  142 (218)
T COG3897          77 TVRGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG----------SPPA  142 (218)
T ss_pred             ccccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC----------CCcc
Confidence            4567899999999999998877753  47899999999999989989888875  37777766533          1689


Q ss_pred             eeEEEEc
Q 026461          148 FDYAFVD  154 (238)
Q Consensus       148 fD~V~~d  154 (238)
                      ||+|+..
T Consensus       143 ~Dl~Lag  149 (218)
T COG3897         143 FDLLLAG  149 (218)
T ss_pred             eeEEEee
Confidence            9999875

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.63  E-value=0.00071  Score=55.95  Aligned_cols=167  Identities=11%  Similarity=0.107  Sum_probs=87.1

Q ss_pred             CCCcHHHHHHHHhccCCCCCChHHHHHHHHHhcCCCCCccCcHhHHHHHHHHHh----hcCCCEEEEEccc--ccHHHHH
Q 026461           14 LLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLR----LVNAKKTIEIGVF--TGYSLLL   87 (238)
Q Consensus        14 ~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~----~~~~~~vLeiG~G--~G~~t~~   87 (238)
                      ....-++++|+.-..   ...+.=+++-+...+.--.........-.+|...++    ...-.+.||||||  +-.++-.
T Consensus        11 ~P~~ARvYDy~LGGk---dnf~vDR~~a~~~~~~~P~~~~~ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHe   87 (267)
T PF04672_consen   11 RPSPARVYDYLLGGK---DNFAVDREAAERLLAAAPEIREAARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHE   87 (267)
T ss_dssp             S--HHHHHHHHCT-S---S--HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHH
T ss_pred             CCcHHHHHHHHhCCc---cCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhH
Confidence            344568999988522   111211222222111111112233334444444333    3355689999999  3446677


Q ss_pred             HHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHH---hc--ccCCCCeeEEEEcC-----Cc
Q 026461           88 TALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL---KY--SENEGSFDYAFVDA-----DK  157 (238)
Q Consensus        88 la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~---~~--~~~~~~fD~V~~d~-----~~  157 (238)
                      +++...++++|+-+|.+|-.+..++..+....- .+..++++|..+.-.-+.   ..  -+-..+.-++++.-     +.
T Consensus        88 vAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~  166 (267)
T PF04672_consen   88 VAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDD  166 (267)
T ss_dssp             HHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CG
T ss_pred             HHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCc
Confidence            887776799999999999999999998876532 348899999876433221   11  01133444555431     23


Q ss_pred             cchHHHHHHHHhccCCCeEEEEecccc
Q 026461          158 DNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       158 ~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      ......+..+...|.||.+|++.....
T Consensus       167 ~dp~~iv~~l~d~lapGS~L~ish~t~  193 (267)
T PF04672_consen  167 DDPAGIVARLRDALAPGSYLAISHATD  193 (267)
T ss_dssp             CTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred             cCHHHHHHHHHHhCCCCceEEEEecCC
Confidence            456788899999999999999987654

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PHA01634 hypothetical protein

Probab=97.60  E-value=0.00021  Score=52.03  Aligned_cols=75  Identities=12%  Similarity=0.032  Sum_probs=56.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      ...++|+|||.+.|-++++++..-  ..+|+++|.++...+..+++++.+++-++.....    ++ +.      .-++|
T Consensus        27 vk~KtV~dIGA~iGdSaiYF~l~G--AK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~----eW-~~------~Y~~~   93 (156)
T PHA01634         27 VYQRTIQIVGADCGSSALYFLLRG--ASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG----EW-NG------EYEDV   93 (156)
T ss_pred             ecCCEEEEecCCccchhhHHhhcC--ccEEEEeccCHHHHHHHHHHhhhheeeeceeecc----cc-cc------cCCCc
Confidence            367899999999999999999753  4789999999999999999887765433222211    12 21      15899


Q ss_pred             eEEEEcCC
Q 026461          149 DYAFVDAD  156 (238)
Q Consensus       149 D~V~~d~~  156 (238)
                      |+..+|+.
T Consensus        94 Di~~iDCe  101 (156)
T PHA01634         94 DIFVMDCE  101 (156)
T ss_pred             ceEEEEcc
Confidence            99999963

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=97.59  E-value=0.00015  Score=64.13  Aligned_cols=115  Identities=17%  Similarity=0.183  Sum_probs=87.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      ....+|-+|-|.|....++...+| ..++++++++|++++.|.+++....- .+..+...|..+.+............||
T Consensus       295 ~~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~d  372 (482)
T KOG2352|consen  295 TGGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPD  372 (482)
T ss_pred             ccCcEEEEecCCCccccceeeecC-ccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCc
Confidence            456789999999999999988887 78999999999999999999855432 3566677788888777765433467899


Q ss_pred             EEEEcCCc--c--------c--hHHHHHHHHhccCCCeEEEEeccccCc
Q 026461          150 YAFVDADK--D--------N--YCNYHERLMKLLKVGGIAVYDNTLWGG  186 (238)
Q Consensus       150 ~V~~d~~~--~--------~--~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (238)
                      ++++|-+-  .        .  ...++..+...|.|.|+++++-+....
T Consensus       373 vl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~  421 (482)
T KOG2352|consen  373 VLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNS  421 (482)
T ss_pred             EEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCc
Confidence            99997321  1        1  134566667889999999998766543

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.57  E-value=6.3e-05  Score=66.74  Aligned_cols=100  Identities=14%  Similarity=0.067  Sum_probs=57.9

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeE
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  150 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~  150 (238)
                      -+.+||||||.|.++.+|.+.   +..++++-.....-.+.+ .+...|+..-+.++   +..-+|      +....||+
T Consensus       118 iR~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~~~~qvq-faleRGvpa~~~~~---~s~rLP------fp~~~fDm  184 (506)
T PF03141_consen  118 IRTALDVGCGVASFGAYLLER---NVTTMSFAPNDEHEAQVQ-FALERGVPAMIGVL---GSQRLP------FPSNAFDM  184 (506)
T ss_pred             eEEEEeccceeehhHHHHhhC---CceEEEcccccCCchhhh-hhhhcCcchhhhhh---cccccc------CCccchhh
Confidence            347899999999999999974   334444444322211111 11122543322211   122333      34789999


Q ss_pred             EEEcC----CccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          151 AFVDA----DKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       151 V~~d~----~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      |.+..    +...---++-++-+.|+|||+++.+..-
T Consensus       185 vHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~pp  221 (506)
T PF03141_consen  185 VHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPP  221 (506)
T ss_pred             hhcccccccchhcccceeehhhhhhccCceEEecCCc
Confidence            98753    2222233556677999999999976543

; GO: 0008168 methyltransferase activity

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.52  E-value=4.5e-05  Score=62.88  Aligned_cols=116  Identities=16%  Similarity=0.088  Sum_probs=68.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCC---------------------------C
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD---------------------------H  122 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~---------------------------~  122 (238)
                      ++.++||||||+-..-  ++.+.+...+|++.|..+...+..+++++..+.-                           .
T Consensus        56 ~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~  133 (256)
T PF01234_consen   56 KGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR  133 (256)
T ss_dssp             -EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence            4568999999874442  3333333458999999999999888887654310                           1


Q ss_pred             cEE-EEecchhHHHHHHHhcccCCCCeeEEEEc-------CCccchHHHHHHHHhccCCCeEEEEeccccCccc
Q 026461          123 KIN-FIESEALSVLDQLLKYSENEGSFDYAFVD-------ADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTV  188 (238)
Q Consensus       123 ~v~-~~~~d~~~~l~~~~~~~~~~~~fD~V~~d-------~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~  188 (238)
                      .|+ ++.+|..+.-+-.... ..+.+||+|+.-       .....|...++.+.++|||||.+++..++-...+
T Consensus       134 ~Vk~Vv~cDV~~~~pl~~~~-~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y  206 (256)
T PF01234_consen  134 AVKQVVPCDVTQPNPLDPPV-VLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYY  206 (256)
T ss_dssp             HEEEEEE--TTSSSTTTTS--SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEE
T ss_pred             hhceEEEeeccCCCCCCccc-cCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeE
Confidence            122 4445544321110000 012359999764       2455677888888999999999999887754433

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.44  E-value=0.0015  Score=55.09  Aligned_cols=120  Identities=16%  Similarity=0.137  Sum_probs=79.2

Q ss_pred             CcHhHHHHHHHHH---------hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCc
Q 026461           54 TAPDAGQLMAMLL---------RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK  123 (238)
Q Consensus        54 ~~~~~~~~l~~l~---------~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~  123 (238)
                      ++-+.+.++..|.         ......+||-+|+| .|..+...|+++. ..+|+.+|+++..++.|++ +   |...-
T Consensus       144 vs~eeGAl~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~-~---Ga~~~  218 (354)
T KOG0024|consen  144 VSFEEGALIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK-F---GATVT  218 (354)
T ss_pred             CchhhcccccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH-h---CCeEE
Confidence            4445555655542         24456799999999 6889999999987 8999999999999999998 3   65321


Q ss_pred             EEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          124 INFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       124 v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ......+..+.+.+..++......+|+.|--.   .....++.....+++||++++-.
T Consensus       219 ~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCs---G~~~~~~aai~a~r~gGt~vlvg  273 (354)
T KOG0024|consen  219 DPSSHKSSPQELAELVEKALGKKQPDVTFDCS---GAEVTIRAAIKATRSGGTVVLVG  273 (354)
T ss_pred             eeccccccHHHHHHHHHhhccccCCCeEEEcc---CchHHHHHHHHHhccCCEEEEec
Confidence            12222221222222222212234599988543   44566677788999999977754

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=97.43  E-value=0.00024  Score=61.61  Aligned_cols=107  Identities=18%  Similarity=0.218  Sum_probs=83.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++..++++|||.|....+++..-  ..++++++.++..+..+.......++.++..++.++..+.       ++++..
T Consensus       108 ~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~-------~fedn~  178 (364)
T KOG1269|consen  108 CFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKM-------PFEDNT  178 (364)
T ss_pred             CcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcC-------CCCccc
Confidence            4455679999999999999998753  5789999999998888888888878877777766665443       234689


Q ss_pred             eeEEEE-cC--CccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          148 FDYAFV-DA--DKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       148 fD~V~~-d~--~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ||.+.+ +.  ..+.....++++++.++|||+.+...+.
T Consensus       179 fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i  217 (364)
T KOG1269|consen  179 FDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI  217 (364)
T ss_pred             cCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence            999964 43  3456678889999999999999986554

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.39  E-value=0.00018  Score=63.56  Aligned_cols=114  Identities=19%  Similarity=0.174  Sum_probs=93.3

Q ss_pred             HHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcc
Q 026461           63 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS  142 (238)
Q Consensus        63 ~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~  142 (238)
                      ..+....++-+|||.=+++|.-++..+..++.-.+|++-|.++..++..+.|++.++..+.++..+.|+.-.+-...   
T Consensus       102 ~~~~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~---  178 (525)
T KOG1253|consen  102 ALLKREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHP---  178 (525)
T ss_pred             chhhhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhcc---
Confidence            33445566779999999999999999999986688999999999999999999999888888888999876544331   


Q ss_pred             cCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          143 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       143 ~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      .....||+|=+|.. .....|++.+.+.++.||+|++-
T Consensus       179 ~~~~~FDvIDLDPy-Gs~s~FLDsAvqav~~gGLL~vT  215 (525)
T KOG1253|consen  179 MVAKFFDVIDLDPY-GSPSPFLDSAVQAVRDGGLLCVT  215 (525)
T ss_pred             ccccccceEecCCC-CCccHHHHHHHHHhhcCCEEEEE
Confidence            11378999999853 24467889999999999999983

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.30  E-value=0.0022  Score=53.39  Aligned_cols=108  Identities=20%  Similarity=0.194  Sum_probs=72.3

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc---C----------------------------
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA---G----------------------------  119 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---~----------------------------  119 (238)
                      +.+||-=|||.|..+..+|..   +-.+.+.|.|-.|+-..+-.+...   +                            
T Consensus        57 ~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD  133 (270)
T PF07942_consen   57 KIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD  133 (270)
T ss_pred             ccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence            468999999999999999985   578999999987755444333210   0                            


Q ss_pred             --------CCCcEEEEecchhHHHHHHHhcccCCCCeeEEE----EcCCccchHHHHHHHHhccCCCeEEEEec-cccCc
Q 026461          120 --------VDHKINFIESEALSVLDQLLKYSENEGSFDYAF----VDADKDNYCNYHERLMKLLKVGGIAVYDN-TLWGG  186 (238)
Q Consensus       120 --------~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~----~d~~~~~~~~~~~~~~~~L~~gG~lv~~~-~~~~g  186 (238)
                              ...++.+..||..+.-..-    ...++||.|+    +| ..++..++++.+.++|||||+.|=-. ++|+-
T Consensus       134 v~p~~~~~~~~~~sm~aGDF~e~y~~~----~~~~~~d~VvT~FFID-TA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~  208 (270)
T PF07942_consen  134 VDPSSELPSPSNLSMCAGDFLEVYGPD----ENKGSFDVVVTCFFID-TAENIIEYIETIEHLLKPGGYWINFGPLLYHF  208 (270)
T ss_pred             cCcccccCCCCceeEecCccEEecCCc----ccCCcccEEEEEEEee-chHHHHHHHHHHHHHhccCCEEEecCCccccC
Confidence                    0124555666655542211    0137999884    44 45678999999999999999655333 34433

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=97.26  E-value=0.0039  Score=53.53  Aligned_cols=118  Identities=19%  Similarity=0.220  Sum_probs=78.5

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCC---CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHH-hc
Q 026461           66 LRLVNAKKTIEIGVFTGYSLLLTALTIP---EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL-KY  141 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~t~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~-~~  141 (238)
                      +...+..+|||.++..|.-|+.+++.+-   ..+.|++=|.++..+......+...+. .++.+...++........ ..
T Consensus       151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~~  229 (375)
T KOG2198|consen  151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKDG  229 (375)
T ss_pred             cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceeccccccccC
Confidence            3456778999999999999999998764   136899999999988888877755443 334444444432211110 00


Q ss_pred             -ccCCCCeeEEEEcCCccc------h--------------------HHHHHHHHhccCCCeEEEEecccc
Q 026461          142 -SENEGSFDYAFVDADKDN------Y--------------------CNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       142 -~~~~~~fD~V~~d~~~~~------~--------------------~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                       +.....||-|++|.++..      .                    ..++...+++|++||.+|-+.+..
T Consensus       230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL  299 (375)
T KOG2198|consen  230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL  299 (375)
T ss_pred             chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence             012468999999853211      1                    234455568999999999876653

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=97.25  E-value=0.00024  Score=57.62  Aligned_cols=75  Identities=20%  Similarity=0.250  Sum_probs=48.6

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc---CC-----CCcEEEEecchhHHHHHHHhccc
Q 026461           72 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA---GV-----DHKINFIESEALSVLDQLLKYSE  143 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---~~-----~~~v~~~~~d~~~~l~~~~~~~~  143 (238)
                      .+|||+.+|-|.-++-++..   +++|+++|-+|-.....+.-+..+   .-     ..+++++++|+.++++..     
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~-----  148 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQP-----  148 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCH-----
T ss_pred             CEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhc-----
Confidence            38999999999999998864   568999999997766665444332   11     147999999999988722     


Q ss_pred             CCCCeeEEEEcC
Q 026461          144 NEGSFDYAFVDA  155 (238)
Q Consensus       144 ~~~~fD~V~~d~  155 (238)
                       ..+||+|++|.
T Consensus       149 -~~s~DVVY~DP  159 (234)
T PF04445_consen  149 -DNSFDVVYFDP  159 (234)
T ss_dssp             -SS--SEEEE--
T ss_pred             -CCCCCEEEECC
Confidence             58999999995

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.25  E-value=0.002  Score=52.71  Aligned_cols=88  Identities=14%  Similarity=0.066  Sum_probs=59.6

Q ss_pred             hHHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHH
Q 026461           57 DAGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL  135 (238)
Q Consensus        57 ~~~~~l~~l~~~-~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l  135 (238)
                      ....+...+... ..+.+|+|||||.--.++.+.... ++..++++|++...++.....+...+..  .++...|.....
T Consensus        91 ~Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~  167 (251)
T PF07091_consen   91 NLDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDP  167 (251)
T ss_dssp             GHHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSH
T ss_pred             hHHHHHHHHHhcCCCCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccC
Confidence            344555555443 448899999998888887766543 3789999999999999999999998865  455555654432


Q ss_pred             HHHHhcccCCCCeeEEEEcC
Q 026461          136 DQLLKYSENEGSFDYAFVDA  155 (238)
Q Consensus       136 ~~~~~~~~~~~~fD~V~~d~  155 (238)
                      +        ....|+.++--
T Consensus       168 ~--------~~~~DlaLllK  179 (251)
T PF07091_consen  168 P--------KEPADLALLLK  179 (251)
T ss_dssp             T--------TSEESEEEEET
T ss_pred             C--------CCCcchhhHHH
Confidence            2        57899998764

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=97.24  E-value=0.0027  Score=51.42  Aligned_cols=106  Identities=18%  Similarity=0.189  Sum_probs=73.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      +.+..+||-+|+++|.+-.+.+....+++-|+++|.++..-...-....+   ..+|--+..|+...-+-..    .-+-
T Consensus       154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk---RtNiiPIiEDArhP~KYRm----lVgm  226 (317)
T KOG1596|consen  154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK---RTNIIPIIEDARHPAKYRM----LVGM  226 (317)
T ss_pred             ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc---cCCceeeeccCCCchheee----eeee
Confidence            56778999999999999999999998899999999998653333222211   2456666677765322111    1357


Q ss_pred             eeEEEEcCCccchHHHHH-HHHhccCCCeEEEEe
Q 026461          148 FDYAFVDADKDNYCNYHE-RLMKLLKVGGIAVYD  180 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~-~~~~~L~~gG~lv~~  180 (238)
                      .|+||.|-.+++....+. ++...|++||.+++.
T Consensus       227 VDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvis  260 (317)
T KOG1596|consen  227 VDVIFADVAQPDQARIVALNAQYFLKNGGHFVIS  260 (317)
T ss_pred             EEEEeccCCCchhhhhhhhhhhhhhccCCeEEEE
Confidence            899999976665544432 334689999988874

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.19  E-value=0.00033  Score=59.55  Aligned_cols=108  Identities=17%  Similarity=0.175  Sum_probs=68.9

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ...|++|||+|.|.|.....+-..+|.-..++.+|.++..-+........... .....-..|...-.-.+    +....
T Consensus       111 dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-~~td~r~s~vt~dRl~l----p~ad~  185 (484)
T COG5459         111 DFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-EKTDWRASDVTEDRLSL----PAADL  185 (484)
T ss_pred             CcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-ccCCCCCCccchhccCC----Cccce
Confidence            34678999999999998877777777667788899888655554443333222 12222333332221122    12467


Q ss_pred             eeEEEEcC------CccchHHHHHHHHhccCCCeEEEEe
Q 026461          148 FDYAFVDA------DKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       148 fD~V~~d~------~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      |+++++-.      .......+++.+|.++.|||.+|+-
T Consensus       186 ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lViv  224 (484)
T COG5459         186 YTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIV  224 (484)
T ss_pred             eehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEE
Confidence            88887642      2233455889999999999988874

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.10  E-value=0.006  Score=52.33  Aligned_cols=97  Identities=20%  Similarity=0.170  Sum_probs=69.8

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ..+.++|+-+|+| .|..++.+|.++.  .+|+++|.+++..+.|++.    |.   -.++.....+..+..      .+
T Consensus       164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~l----GA---d~~i~~~~~~~~~~~------~~  228 (339)
T COG1064         164 VKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKL----GA---DHVINSSDSDALEAV------KE  228 (339)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHh----CC---cEEEEcCCchhhHHh------Hh
Confidence            4567789888887 5557788888774  8999999999999988875    42   234443323444444      24


Q ss_pred             CeeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      .||+|+.-..    ...++...+.|++||.+++-...
T Consensus       229 ~~d~ii~tv~----~~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         229 IADAIIDTVG----PATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             hCcEEEECCC----hhhHHHHHHHHhcCCEEEEECCC
Confidence            5999997654    55667778899999999986655

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.03  E-value=0.0038  Score=46.80  Aligned_cols=115  Identities=15%  Similarity=0.111  Sum_probs=82.7

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      .....+.+|+ ++..++..+.+|+|+|.|..-+..++..  --.-+|+|++|-.+.+++-..-+.|.....+|..-|..+
T Consensus        57 tteQv~nVLS-ll~~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK  133 (199)
T KOG4058|consen   57 TTEQVENVLS-LLRGNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWK  133 (199)
T ss_pred             cHHHHHHHHH-HccCCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhh
Confidence            3444455554 3444566789999999999988888753  235799999999999998888888888888888776654


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      .  .       -..|..|++-+..+-++.....+..-+..+..++.-
T Consensus       134 ~--d-------l~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vvac  171 (199)
T KOG4058|consen  134 V--D-------LRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVAC  171 (199)
T ss_pred             c--c-------ccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEEE
Confidence            4  2       356666766665556666666666677777777754

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=97.01  E-value=0.011  Score=51.29  Aligned_cols=102  Identities=13%  Similarity=0.086  Sum_probs=70.8

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec-chhHHHHHHHhcccCCCC
Q 026461           70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEGS  147 (238)
Q Consensus        70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~l~~~~~~~~~~~~  147 (238)
                      ...+|+-+||| .|..+..+++.+. ..+|+.+|.+++.++.|++....    ..+..... +.........    ....
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t----~g~g  238 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELT----GGRG  238 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHh----CCCC
Confidence            34489999999 5778888888876 78999999999999999985421    11222212 2222222221    1237


Q ss_pred             eeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      +|++|--..   ....+..+.+.+++||.+++-.+.
T Consensus       239 ~D~vie~~G---~~~~~~~ai~~~r~gG~v~~vGv~  271 (350)
T COG1063         239 ADVVIEAVG---SPPALDQALEALRPGGTVVVVGVY  271 (350)
T ss_pred             CCEEEECCC---CHHHHHHHHHHhcCCCEEEEEecc
Confidence            999997654   566788889999999999986555

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=96.99  E-value=0.0015  Score=57.20  Aligned_cols=59  Identities=24%  Similarity=0.354  Sum_probs=51.6

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           73 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      .|||||+|+|..++..+.+..  -.|+++|.-..+.+.|++...++|++++|+++.-...+
T Consensus        69 ~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte  127 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE  127 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence            589999999999998888753  56999999999999999999999999999988655443

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=96.99  E-value=0.0022  Score=50.29  Aligned_cols=109  Identities=13%  Similarity=0.099  Sum_probs=65.7

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhH------HHHHHHHHHcCCCCcEEEEecchhHHHHHHH
Q 026461           66 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY------EIGLPIIKKAGVDHKINFIESEALSVLDQLL  139 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~------~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~  139 (238)
                      ....+..+|+|+-.|.|++|..|+....+.+.|+++-..+...      ...+....+... .+++.+-.+.....    
T Consensus        44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~-aN~e~~~~~~~A~~----  118 (238)
T COG4798          44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY-ANVEVIGKPLVALG----  118 (238)
T ss_pred             eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh-hhhhhhCCcccccC----
Confidence            3466778999999999999999999998899999887654311      111111111111 22333322211111    


Q ss_pred             hcccCCCCeeEEEEcC----------CccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          140 KYSENEGSFDYAFVDA----------DKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       140 ~~~~~~~~fD~V~~d~----------~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                          .....|+++...          ...........+.+.|||||++++.|..
T Consensus       119 ----~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~  168 (238)
T COG4798         119 ----APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHR  168 (238)
T ss_pred             ----CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence                145666665421          1222356778888999999988876643

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=96.92  E-value=0.016  Score=45.26  Aligned_cols=99  Identities=16%  Similarity=0.271  Sum_probs=64.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec-chhH------HHHHHHhc
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALS------VLDQLLKY  141 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~------~l~~~~~~  141 (238)
                      .+..+|||+||..|.++.-..+...|.+.|.|||+-.-.           .. ..++++.+ |..+      +.+.+   
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-----------p~-~Ga~~i~~~dvtdp~~~~ki~e~l---  132 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-----------PP-EGATIIQGNDVTDPETYRKIFEAL---  132 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-----------CC-CCcccccccccCCHHHHHHHHHhC---
Confidence            456799999999999998888888679999999985321           11 12455544 3322      22333   


Q ss_pred             ccCCCCeeEEEEcCCcc-------chHHHHH-------HHHhccCCCeEEEEeccccCc
Q 026461          142 SENEGSFDYAFVDADKD-------NYCNYHE-------RLMKLLKVGGIAVYDNTLWGG  186 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~~~-------~~~~~~~-------~~~~~L~~gG~lv~~~~~~~g  186 (238)
                        +..+.|+|+.|..+.       +....++       .....++|+|.+++.  +|.|
T Consensus       133 --p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK--~w~g  187 (232)
T KOG4589|consen  133 --PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK--LWDG  187 (232)
T ss_pred             --CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE--EecC
Confidence              257999999984321       1122222       234678899999985  4555

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=96.83  E-value=0.0045  Score=45.33  Aligned_cols=91  Identities=20%  Similarity=0.278  Sum_probs=63.2

Q ss_pred             cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccc
Q 026461           80 FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN  159 (238)
Q Consensus        80 G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~  159 (238)
                      |.|..++.+|+...  .+|+++|.++...+.+++.    |...-+.....|..+.+..+.    +...+|+||-...   
T Consensus         1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~----Ga~~~~~~~~~~~~~~i~~~~----~~~~~d~vid~~g---   67 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKEL----GADHVIDYSDDDFVEQIRELT----GGRGVDVVIDCVG---   67 (130)
T ss_dssp             HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHT----TESEEEETTTSSHHHHHHHHT----TTSSEEEEEESSS---
T ss_pred             ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhh----ccccccccccccccccccccc----ccccceEEEEecC---
Confidence            46889999999875  8999999999988877653    532212222333444444442    1248999986543   


Q ss_pred             hHHHHHHHHhccCCCeEEEEeccc
Q 026461          160 YCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       160 ~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ....++....+|+++|.+++-...
T Consensus        68 ~~~~~~~~~~~l~~~G~~v~vg~~   91 (130)
T PF00107_consen   68 SGDTLQEAIKLLRPGGRIVVVGVY   91 (130)
T ss_dssp             SHHHHHHHHHHEEEEEEEEEESST
T ss_pred             cHHHHHHHHHHhccCCEEEEEEcc
Confidence            367888889999999999986554

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.80  E-value=0.073  Score=42.60  Aligned_cols=108  Identities=13%  Similarity=0.118  Sum_probs=65.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHc------------------------------
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKA------------------------------  118 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~------------------------------  118 (238)
                      .|-.+.|-+||+|+...-+.--.++ -..|.+-|+++++++.|++|+...                              
T Consensus        51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s  130 (246)
T PF11599_consen   51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES  130 (246)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            4568999999999987766654432 268999999999999999988521                              


Q ss_pred             -----------CCCCcEEEEecchhHHH--HHHHhcccCCCCeeEEEEcCC-------cc-----chHHHHHHHHhccCC
Q 026461          119 -----------GVDHKINFIESEALSVL--DQLLKYSENEGSFDYAFVDAD-------KD-----NYCNYHERLMKLLKV  173 (238)
Q Consensus       119 -----------~~~~~v~~~~~d~~~~l--~~~~~~~~~~~~fD~V~~d~~-------~~-----~~~~~~~~~~~~L~~  173 (238)
                                 |-.....+...|+.+.-  ....    .....|+|+-|-+       ..     ....++..+.+.|..
T Consensus       131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~----~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~  206 (246)
T PF11599_consen  131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLD----AGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPE  206 (246)
T ss_dssp             HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHH----TT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-T
T ss_pred             HHHHHHHHHhcCCCCchhheeecccCCchhhhhc----cCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCC
Confidence                       11122567777776632  2221    1345799999832       11     246789999999977


Q ss_pred             CeEEEEec
Q 026461          174 GGIAVYDN  181 (238)
Q Consensus       174 gG~lv~~~  181 (238)
                      ++++++.|
T Consensus       207 ~sVV~v~~  214 (246)
T PF11599_consen  207 RSVVAVSD  214 (246)
T ss_dssp             T-EEEEEE
T ss_pred             CcEEEEec
Confidence            88888843

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=96.79  E-value=0.018  Score=52.28  Aligned_cols=136  Identities=20%  Similarity=0.267  Sum_probs=95.9

Q ss_pred             CCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEE
Q 026461           50 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVDHKINF  126 (238)
Q Consensus        50 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~  126 (238)
                      +..-.++.+.+++..++...+..+|.|-.||+|......+..+..   ...+.|.|+++.....++.++--+|....+..
T Consensus       166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i  245 (489)
T COG0286         166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI  245 (489)
T ss_pred             CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccc
Confidence            555567888899998887756668999999999988887776642   26799999999999999999988887644566


Q ss_pred             EecchhHHHHHHHhcccCCCCeeEEEEcCCcc----------------------------chHHHHHHHHhccCCCe---
Q 026461          127 IESEALSVLDQLLKYSENEGSFDYAFVDADKD----------------------------NYCNYHERLMKLLKVGG---  175 (238)
Q Consensus       127 ~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~----------------------------~~~~~~~~~~~~L~~gG---  175 (238)
                      ..+|...-.....  .+..+.||+|+.+.+-.                            ....++..+...|+|||   
T Consensus       246 ~~~dtl~~~~~~~--~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aa  323 (489)
T COG0286         246 RHGDTLSNPKHDD--KDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAA  323 (489)
T ss_pred             cccccccCCcccc--cCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEE
Confidence            6666544321100  01247899887653210                            01356777788999865   


Q ss_pred             EEEEeccccCcc
Q 026461          176 IAVYDNTLWGGT  187 (238)
Q Consensus       176 ~lv~~~~~~~g~  187 (238)
                      +++.++++++|.
T Consensus       324 ivl~~gvlfr~~  335 (489)
T COG0286         324 IVLPDGVLFRGG  335 (489)
T ss_pred             EEecCCcCcCCC
Confidence            666677777664

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=96.65  E-value=0.027  Score=42.28  Aligned_cols=101  Identities=18%  Similarity=0.196  Sum_probs=55.3

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeE
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  150 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~  150 (238)
                      +.-|||+|-|.|..=-+|-+.+| +-+|+.+|..-.+-..        ...+.-.++.||+.+.++.+..-   ..+.-+
T Consensus        29 ~G~VlElGLGNGRTydHLRe~~p-~R~I~vfDR~l~~hp~--------~~P~~~~~ilGdi~~tl~~~~~~---g~~a~l   96 (160)
T PF12692_consen   29 PGPVLELGLGNGRTYDHLREIFP-DRRIYVFDRALACHPS--------STPPEEDLILGDIRETLPALARF---GAGAAL   96 (160)
T ss_dssp             -S-EEEE--TTSHHHHHHHHH---SS-EEEEESS--S-GG--------G---GGGEEES-HHHHHHHHHHH----S-EEE
T ss_pred             CCceEEeccCCCccHHHHHHhCC-CCeEEEEeeecccCCC--------CCCchHheeeccHHHHhHHHHhc---CCceEE
Confidence            35799999999999999999998 8899999974221110        11123468999999988873322   455666


Q ss_pred             EEEcCCccchH---HHH----HHHHhccCCCeEEEEeccc
Q 026461          151 AFVDADKDNYC---NYH----ERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       151 V~~d~~~~~~~---~~~----~~~~~~L~~gG~lv~~~~~  183 (238)
                      +..|.......   .+.    ..+.++|.|||++|-+.-+
T Consensus        97 aHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl  136 (160)
T PF12692_consen   97 AHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPL  136 (160)
T ss_dssp             EEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS--
T ss_pred             EEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence            66664322221   111    2234789999999987655

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=96.53  E-value=0.084  Score=43.20  Aligned_cols=111  Identities=14%  Similarity=0.132  Sum_probs=78.9

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhc
Q 026461           65 LLRLVNAKKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY  141 (238)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~t~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~  141 (238)
                      ++....+...+|+|+|+-.-|..+...+..   -.+++.||++...+....+.+......-.+.-+.+|-...+..+.  
T Consensus        73 ia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~--  150 (321)
T COG4301          73 IASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP--  150 (321)
T ss_pred             HHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc--
Confidence            344667899999999999999999988753   268999999999886555444443333346667888766666652  


Q ss_pred             ccCCCCeeEEEEcCC-----ccchHHHHHHHHhccCCCeEEEE
Q 026461          142 SENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                        ..+.-=++|+...     +.....++..+...++||-.+++
T Consensus       151 --~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll  191 (321)
T COG4301         151 --RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLL  191 (321)
T ss_pred             --CCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence              1334445555432     44457789999999999998877

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.32  E-value=0.0097  Score=53.19  Aligned_cols=101  Identities=13%  Similarity=0.145  Sum_probs=61.5

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ...-++|+|..+|.|+++..|.+.   .  |+..-..|..-...-..+-..|+   +-..+ |-.+.++..      +.+
T Consensus       363 ~~~iRNVMDMnAg~GGFAAAL~~~---~--VWVMNVVP~~~~ntL~vIydRGL---IG~yh-DWCE~fsTY------PRT  427 (506)
T PF03141_consen  363 WGRIRNVMDMNAGYGGFAAALIDD---P--VWVMNVVPVSGPNTLPVIYDRGL---IGVYH-DWCEAFSTY------PRT  427 (506)
T ss_pred             ccceeeeeeecccccHHHHHhccC---C--ceEEEecccCCCCcchhhhhccc---chhcc-chhhccCCC------Ccc
Confidence            334568999999999999988753   2  43333333221111122222243   22222 555655555      689


Q ss_pred             eeEEEEcCCc------cchHHHHHHHHhccCCCeEEEEeccc
Q 026461          148 FDYAFVDADK------DNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       148 fD~V~~d~~~------~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ||+|..++-.      -.....+-++=+.|+|||.+++.|-.
T Consensus       428 YDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~  469 (506)
T PF03141_consen  428 YDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV  469 (506)
T ss_pred             hhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH
Confidence            9999887432      23455666666999999999997644

; GO: 0008168 methyltransferase activity

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.26  E-value=0.031  Score=48.14  Aligned_cols=98  Identities=17%  Similarity=0.216  Sum_probs=60.0

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      +..+||-+|+| .|..++.++.... ..+|+++|.+++..+.+++    .|...-+.....+..+...    .   .+.+
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~----~---~g~~  236 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKA----E---KGYF  236 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhc----c---CCCC
Confidence            46789888875 4555666777653 3479999999988887765    3532111111112212111    1   2469


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      |+||-...   ....+....++|++||.++.-..
T Consensus       237 D~vid~~G---~~~~~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        237 DVSFEVSG---HPSSINTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             CEEEECCC---CHHHHHHHHHHhhcCCEEEEEcc
Confidence            99885432   23456677889999999887543

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=96.21  E-value=0.024  Score=47.53  Aligned_cols=95  Identities=12%  Similarity=-0.020  Sum_probs=63.7

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEE
Q 026461           73 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  152 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~  152 (238)
                      +++|+.||.|..+..+...-  -..+.++|+++.+++..+.|+..       .++.+|+.++.+.-     ..+.+|+++
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~-----~~~~~D~l~   67 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKD-----FIPDIDLLT   67 (275)
T ss_pred             cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhh-----cCCCCCEEE
Confidence            58999999999988887642  34689999999999988887632       15667776654321     035799999


Q ss_pred             EcCCccc-----------------hHHHHHHHHhccCCCeEEEEeccc
Q 026461          153 VDADKDN-----------------YCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       153 ~d~~~~~-----------------~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      .+.++..                 +..+++. .+.++| -+++++|+.
T Consensus        68 ~gpPCq~fS~ag~~~~~~d~r~~L~~~~~~~-i~~~~P-~~~v~ENV~  113 (275)
T cd00315          68 GGFPCQPFSIAGKRKGFEDTRGTLFFEIIRI-LKEKKP-KYFLLENVK  113 (275)
T ss_pred             eCCCChhhhHHhhcCCCCCchHHHHHHHHHH-HHhcCC-CEEEEEcCc
Confidence            8743322                 1223332 345577 478888874

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=96.20  E-value=0.05  Score=44.71  Aligned_cols=104  Identities=19%  Similarity=0.194  Sum_probs=62.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc-----CCCCcEEEEe---cchhHHHHHHHhc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-----GVDHKINFIE---SEALSVLDQLLKY  141 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-----~~~~~v~~~~---~d~~~~l~~~~~~  141 (238)
                      .+.+|||+|+|+|..++..+...  ..+|+..|.. ..++....+....     .+...+.+..   +++.+. ...   
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~-~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~-~~~---  158 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLL--GAEVVLTDLP-KVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDV-SFR---  158 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHh--cceeccCCch-hhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccH-hhc---
Confidence            46789999999999888888754  5788888874 3344343332222     2222233222   222222 111   


Q ss_pred             ccCCCC-eeEEEEcC---CccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          142 SENEGS-FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       142 ~~~~~~-fD~V~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                         .+. +|+|+...   ..+.+...+..+..+|..+|++.+..-+
T Consensus       159 ---~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~l  201 (248)
T KOG2793|consen  159 ---LPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPL  201 (248)
T ss_pred             ---cCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEec
Confidence               233 89998643   2455677777888888888866655433

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=96.12  E-value=0.0054  Score=50.91  Aligned_cols=106  Identities=22%  Similarity=0.163  Sum_probs=73.5

Q ss_pred             ccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461           52 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA  131 (238)
Q Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (238)
                      ....|.+.+++....   ....++|+|||.|-.+.     ..+...++++|++...+.-+++-    |   -.....+|+
T Consensus        30 ~~~Wp~v~qfl~~~~---~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak~~----~---~~~~~~ad~   94 (293)
T KOG1331|consen   30 AAPWPMVRQFLDSQP---TGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAKRS----G---GDNVCRADA   94 (293)
T ss_pred             cCccHHHHHHHhccC---CcceeeecccCCcccCc-----CCCcceeeecchhhhhccccccC----C---Cceeehhhh
Confidence            334566666666543   46789999999998732     22367899999998888777642    2   125677777


Q ss_pred             hHHHHHHHhcccCCCCeeEEEEcCCccc------hHHHHHHHHhccCCCeEEEE
Q 026461          132 LSVLDQLLKYSENEGSFDYAFVDADKDN------YCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       132 ~~~l~~~~~~~~~~~~fD~V~~d~~~~~------~~~~~~~~~~~L~~gG~lv~  179 (238)
                      .....       ...+||..+.-+..++      -...++++.+.|+|||-..+
T Consensus        95 l~~p~-------~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lv  141 (293)
T KOG1331|consen   95 LKLPF-------REESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALV  141 (293)
T ss_pred             hcCCC-------CCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence            66532       3689999987654433      35678889999999997554

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.10  E-value=0.071  Score=48.54  Aligned_cols=108  Identities=19%  Similarity=0.188  Sum_probs=68.7

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEE--Eec-------------chh
Q 026461           69 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF--IES-------------EAL  132 (238)
Q Consensus        69 ~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~--~~~-------------d~~  132 (238)
                      .++.+|+-+|+| .|..++..|..+.  .+|+++|.+++..+.+++.    |.. .+.+  ...             +..
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aesl----GA~-~v~i~~~e~~~~~~gya~~~s~~~~  235 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVESM----GAE-FLELDFEEEGGSGDGYAKVMSEEFI  235 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHc----CCe-EEEeccccccccccchhhhcchhHH
Confidence            467899999999 5778888888875  5899999999998888763    421 0111  110             100


Q ss_pred             HH-HHHHHhcccCCCCeeEEEEcCCccc--hHHH-HHHHHhccCCCeEEEEeccccCc
Q 026461          133 SV-LDQLLKYSENEGSFDYAFVDADKDN--YCNY-HERLMKLLKVGGIAVYDNTLWGG  186 (238)
Q Consensus       133 ~~-l~~~~~~~~~~~~fD~V~~d~~~~~--~~~~-~~~~~~~L~~gG~lv~~~~~~~g  186 (238)
                      +. ...+.+.   ...+|+|+--...+.  .+.. .+...+.+||||+++.-.+..+|
T Consensus       236 ~~~~~~~~~~---~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG  290 (509)
T PRK09424        236 KAEMALFAEQ---AKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGG  290 (509)
T ss_pred             HHHHHHHHhc---cCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCC
Confidence            10 1111110   257999997654322  2445 48888999999998875554444

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=96.05  E-value=0.0047  Score=51.60  Aligned_cols=101  Identities=15%  Similarity=0.020  Sum_probs=70.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      ....|+|+-+|.||+|+.+.-... ...|+++|.+|..++..+.+++.++...+..+..+|-+..-+        ....|
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~--------~~~Ad  264 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP--------RLRAD  264 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccC-ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc--------cccch
Confidence            446799999999999994443333 578999999999999999999998887777777777655422        45677


Q ss_pred             EEEEcCCccchHHHHHHHHhccCCC-e-EEEEe
Q 026461          150 YAFVDADKDNYCNYHERLMKLLKVG-G-IAVYD  180 (238)
Q Consensus       150 ~V~~d~~~~~~~~~~~~~~~~L~~g-G-~lv~~  180 (238)
                      -|.+..-++. ..-+..+.+.|+|. | ++=++
T Consensus       265 rVnLGLlPSs-e~~W~~A~k~Lk~eggsilHIH  296 (351)
T KOG1227|consen  265 RVNLGLLPSS-EQGWPTAIKALKPEGGSILHIH  296 (351)
T ss_pred             heeecccccc-ccchHHHHHHhhhcCCcEEEEe
Confidence            7776532222 22233445677774 4 44443

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=96.03  E-value=0.063  Score=47.13  Aligned_cols=107  Identities=17%  Similarity=0.171  Sum_probs=68.1

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecc-hhHHHHHHHhccc
Q 026461           66 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLKYSE  143 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~l~~~~~~~~  143 (238)
                      ....+..+||.+|+|. |..+..+++..+ ..++++++.+++..+.+++..   +. ..+.+...+ ..+.+..+.    
T Consensus       180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~----  250 (386)
T cd08283         180 AEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELT----  250 (386)
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHc----
Confidence            3445667899999987 888889998875 357999999998888877652   21 112222221 222232321    


Q ss_pred             CCCCeeEEEEcCCc------------------cchHHHHHHHHhccCCCeEEEEec
Q 026461          144 NEGSFDYAFVDADK------------------DNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       144 ~~~~fD~V~~d~~~------------------~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ....+|+|+-....                  .+....+..+.+.++++|.++.-.
T Consensus       251 ~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g  306 (386)
T cd08283         251 GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG  306 (386)
T ss_pred             CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence            13479988753211                  112456778889999999887643

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=96.03  E-value=0.013  Score=43.06  Aligned_cols=51  Identities=24%  Similarity=0.279  Sum_probs=38.5

Q ss_pred             cEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCc------cchHHHHHHHHhccCCCeEEEE
Q 026461          123 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADK------DNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       123 ~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~------~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      .+++..+|+.+.++.+      ...+|+||.|+.-      -...++++.+.+++++||+++.
T Consensus        32 ~L~L~~gDa~~~l~~l------~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~T   88 (124)
T PF05430_consen   32 TLTLWFGDAREMLPQL------DARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLAT   88 (124)
T ss_dssp             EEEEEES-HHHHHHHB-------T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEEEEcHHHHHHHhC------cccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEE
Confidence            3567899999999987      5899999999621      1237899999999999999885

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.83  E-value=0.4  Score=37.70  Aligned_cols=126  Identities=18%  Similarity=0.220  Sum_probs=67.0

Q ss_pred             EEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHH------------HHHcCCCCcEEEEecchhHHHHHHH
Q 026461           73 KTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPI------------IKKAGVDHKINFIESEALSVLDQLL  139 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~------------~~~~~~~~~v~~~~~d~~~~l~~~~  139 (238)
                      +|--||.  |+.++.+|..+.. +.+|+++|++++.++..++-            +++..-..++.+.. |..+.+    
T Consensus         2 ~I~ViGl--GyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~-~~~~ai----   74 (185)
T PF03721_consen    2 KIAVIGL--GYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATT-DIEEAI----   74 (185)
T ss_dssp             EEEEE----STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEES-EHHHHH----
T ss_pred             EEEEECC--CcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhh-hhhhhh----
Confidence            5666766  5555554444322 46999999999987766531            11111012333332 333322    


Q ss_pred             hcccCCCCeeEEEEcCC----------ccchHHHHHHHHhccCCCeEEEEeccccCccccCCCCCCCCCcccchHHHHHH
Q 026461          140 KYSENEGSFDYAFVDAD----------KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILD  209 (238)
Q Consensus       140 ~~~~~~~~fD~V~~d~~----------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  209 (238)
                            ...|++|+.-+          ........+.+.+.++++.++++......|.               ....++.
T Consensus        75 ------~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGt---------------t~~~~~~  133 (185)
T PF03721_consen   75 ------KDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGT---------------TEELLKP  133 (185)
T ss_dssp             ------HH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTH---------------HHHHHHH
T ss_pred             ------hccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEee---------------ehHhhhh
Confidence                  35688887532          1224566777788999999999998887774               3323445


Q ss_pred             HHHHhhcC-CCeeEEeee
Q 026461          210 LNRSLADD-PRVQLSHVA  226 (238)
Q Consensus       210 ~~~~l~~~-~~~~~~~lp  226 (238)
                      +.+..... .+|....-|
T Consensus       134 ile~~~~~~~~f~la~~P  151 (185)
T PF03721_consen  134 ILEKRSGKKEDFHLAYSP  151 (185)
T ss_dssp             HHHHHCCTTTCEEEEE--
T ss_pred             hhhhhcccccCCeEEECC
Confidence            54443322 567777666

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=95.81  E-value=0.0017  Score=51.49  Aligned_cols=95  Identities=14%  Similarity=0.090  Sum_probs=64.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      .+.++||+|+|.|-.|..++-.+.   +|.+.|.|..+....++    .+    .+++.  ..+++..       +-+||
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~k----k~----ynVl~--~~ew~~t-------~~k~d  171 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKK----KN----YNVLT--EIEWLQT-------DVKLD  171 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhh----cC----Cceee--ehhhhhc-------Cceee
Confidence            467999999999999999997654   68899998887766553    23    23332  2233222       46899


Q ss_pred             EEEEcC---CccchHHHHHHHHhccCC-CeEEEEecccc
Q 026461          150 YAFVDA---DKDNYCNYHERLMKLLKV-GGIAVYDNTLW  184 (238)
Q Consensus       150 ~V~~d~---~~~~~~~~~~~~~~~L~~-gG~lv~~~~~~  184 (238)
                      +|.+-.   .+-+.-..++.++..|+| .|.+++.-++.
T Consensus       172 li~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVLP  210 (288)
T KOG3987|consen  172 LILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLP  210 (288)
T ss_pred             hHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEec
Confidence            986532   123345667777888888 78777765553

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=95.79  E-value=0.024  Score=50.91  Aligned_cols=100  Identities=14%  Similarity=0.087  Sum_probs=75.3

Q ss_pred             EEEEEcccccHHHHHHH---hhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           73 KTIEIGVFTGYSLLLTA---LTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la---~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      .|+-+|.|-|-......   +...+..++++||-+|.++-..+. .......++|+++.+|.+++-+.       ..+.|
T Consensus       370 VimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap-------~eq~D  441 (649)
T KOG0822|consen  370 VIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP-------REQAD  441 (649)
T ss_pred             EEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc-------hhhcc
Confidence            57888999998765443   333446889999999999887765 44445668999999999887431       26889


Q ss_pred             EEEEc-----CCccchHHHHHHHHhccCCCeEEEEe
Q 026461          150 YAFVD-----ADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       150 ~V~~d-----~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      +++..     ++-+.-++.+..+.+.|||+|+-+-.
T Consensus       442 I~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP~  477 (649)
T KOG0822|consen  442 IIVSELLGSFGDNELSPECLDGAQKFLKPDGISIPS  477 (649)
T ss_pred             chHHHhhccccCccCCHHHHHHHHhhcCCCceEccc
Confidence            98753     34556689999999999999887643

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=95.68  E-value=0.49  Score=39.35  Aligned_cols=111  Identities=9%  Similarity=0.097  Sum_probs=65.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCC--CCcEEEEecchhHHH-HHHHhcccCCC
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--DHKINFIESEALSVL-DQLLKYSENEG  146 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~l-~~~~~~~~~~~  146 (238)
                      ....|+.+||  |.-|..+--..+.+.+++-+|. |+.++.-++.+.+.+.  ..+.+++..|..+.+ ..+...++...
T Consensus        81 g~~qvV~LGa--GlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~  157 (260)
T TIGR00027        81 GIRQVVILGA--GLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPT  157 (260)
T ss_pred             CCcEEEEeCC--ccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCC
Confidence            3568999999  4555544333332345555555 5667777777776543  356888888886433 33332211111


Q ss_pred             CeeEEEEcC-----CccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          147 SFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       147 ~fD~V~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ..=+++.-+     .......+++.+.....||+.|+++-+.
T Consensus       158 ~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~  199 (260)
T TIGR00027       158 APTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR  199 (260)
T ss_pred             CCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence            222333333     2344567788887777799999998543

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.62  E-value=0.068  Score=38.25  Aligned_cols=88  Identities=20%  Similarity=0.095  Sum_probs=58.4

Q ss_pred             ccccHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH--HHHHHHhcccCCCCeeEEEEcC
Q 026461           79 VFTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFDYAFVDA  155 (238)
Q Consensus        79 ~G~G~~t~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~l~~~~~~~~~~~~fD~V~~d~  155 (238)
                      ||.|..+..+++.+...+ .|+.+|.+++.++.+++.    +    +.++.||+.+  .+....     -...|.|++..
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~----~~~i~gd~~~~~~l~~a~-----i~~a~~vv~~~   70 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G----VEVIYGDATDPEVLERAG-----IEKADAVVILT   70 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----SEEEES-TTSHHHHHHTT-----GGCESEEEEES
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c----cccccccchhhhHHhhcC-----ccccCEEEEcc
Confidence            455788888888776555 899999999998877753    2    6789999876  344432     46889888875


Q ss_pred             CccchHHHHHHHHhccCCCeEEEE
Q 026461          156 DKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       156 ~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ......-......+.+.|...+++
T Consensus        71 ~~d~~n~~~~~~~r~~~~~~~ii~   94 (116)
T PF02254_consen   71 DDDEENLLIALLARELNPDIRIIA   94 (116)
T ss_dssp             SSHHHHHHHHHHHHHHTTTSEEEE
T ss_pred             CCHHHHHHHHHHHHHHCCCCeEEE
Confidence            433322233334466677766665

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.51  E-value=0.053  Score=43.81  Aligned_cols=94  Identities=14%  Similarity=0.236  Sum_probs=63.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC----CC----CEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh------HHH
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP----ED----GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL------SVL  135 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~----~~----~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~------~~l  135 (238)
                      .-++++|+++..|.++..+++.+-    ..    .+|++||+.+-+           .+.. |.-+++|+.      .++
T Consensus        41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~G-V~qlq~DIT~~stae~Ii  108 (294)
T KOG1099|consen   41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEG-VIQLQGDITSASTAEAII  108 (294)
T ss_pred             hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCc-eEEeecccCCHhHHHHHH
Confidence            356899999999999999888762    12    239999997642           3322 555666653      244


Q ss_pred             HHHHhcccCCCCeeEEEEcCCc-----cchHHHH---------HHHHhccCCCeEEEEe
Q 026461          136 DQLLKYSENEGSFDYAFVDADK-----DNYCNYH---------ERLMKLLKVGGIAVYD  180 (238)
Q Consensus       136 ~~~~~~~~~~~~fD~V~~d~~~-----~~~~~~~---------~~~~~~L~~gG~lv~~  180 (238)
                      ..+     ..++-|+|++|+.+     +++.+|+         ......|+|||.+|..
T Consensus       109 ~hf-----ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK  162 (294)
T KOG1099|consen  109 EHF-----GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK  162 (294)
T ss_pred             HHh-----CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence            444     46799999999642     3443333         2233689999999864

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=95.47  E-value=0.14  Score=44.71  Aligned_cols=102  Identities=24%  Similarity=0.336  Sum_probs=60.3

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ..+..+||-.|+| .|..+..+++... ..+|+++|.+++..+.+++    .|...-+.....+..+.+..+.     .+
T Consensus       189 i~~g~~VlV~G~G~vG~~a~~lak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~-----~~  258 (371)
T cd08281         189 VRPGQSVAVVGLGGVGLSALLGAVAAG-ASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELT-----GG  258 (371)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHh-----CC
Confidence            3456788888875 3445556666543 2379999999988887764    3542112221222222233221     23


Q ss_pred             CeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461          147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      .+|+||-...   ....+....+.|+++|.++.-..
T Consensus       259 g~d~vid~~G---~~~~~~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         259 GVDYAFEMAG---SVPALETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             CCCEEEECCC---ChHHHHHHHHHHhcCCEEEEEcc
Confidence            7998884332   23456677889999998886443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=95.47  E-value=0.18  Score=43.66  Aligned_cols=103  Identities=15%  Similarity=0.142  Sum_probs=61.7

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ..+..+||-.|+| .|..++.+|+... ..+|+++|.+++..+.+++    .|...-+.....+..+.+....    ...
T Consensus       174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~----~~~  244 (358)
T TIGR03451       174 VKRGDSVAVIGCGGVGDAAIAGAALAG-ASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALT----GGF  244 (358)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHh----CCC
Confidence            4456789988875 3555566777653 2369999999888777754    3542212222223333333331    124


Q ss_pred             CeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461          147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      .+|+|+--..   ....+....+.+++||.+++-..
T Consensus       245 g~d~vid~~g---~~~~~~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       245 GADVVIDAVG---RPETYKQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             CCCEEEECCC---CHHHHHHHHHHhccCCEEEEECC
Confidence            6898874322   13456667789999999887543

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=95.45  E-value=0.18  Score=42.80  Aligned_cols=99  Identities=21%  Similarity=0.243  Sum_probs=61.8

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ...+.+||..|+| .|..++.+|...  +.+|++++.+++..+.+++    .|....+.....+..+.+ ...    ...
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~-~~~----~~~  231 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKK-AAG----LGG  231 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHH-HHh----cCC
Confidence            4456688888876 477778888875  4679999999887776654    354221111111222222 121    246


Q ss_pred             CeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      .+|+|+-...   ....++.+.+.|+++|.++.-
T Consensus       232 ~~D~vid~~g---~~~~~~~~~~~l~~~G~~v~~  262 (338)
T cd08254         232 GFDVIFDFVG---TQPTFEDAQKAVKPGGRIVVV  262 (338)
T ss_pred             CceEEEECCC---CHHHHHHHHHHhhcCCEEEEE
Confidence            7998874322   245677788999999988864

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=95.45  E-value=0.056  Score=46.78  Aligned_cols=54  Identities=13%  Similarity=0.169  Sum_probs=44.7

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHH
Q 026461           58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLP  113 (238)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~  113 (238)
                      ..+++..+......+.++|+|+|.|+.+..++-++  +..|.+||-+....+.|++
T Consensus       141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  141 LSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             HHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHH
Confidence            46677777777888899999999999999999765  5899999999776666653

>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.29  E-value=0.022  Score=49.27  Aligned_cols=99  Identities=21%  Similarity=0.212  Sum_probs=75.3

Q ss_pred             ccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461           52 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA  131 (238)
Q Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (238)
                      +.++....-+...++...++.+|+|+.|..|..|.+++..+++.+++.++|.+++.++..++.+...|.+. ++...+|.
T Consensus       195 ~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~-~~~~~~df  273 (413)
T KOG2360|consen  195 FILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSI-VESVEGDF  273 (413)
T ss_pred             eEEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCc-cccccccc
Confidence            33445555555666667778899999999999999999999888999999999999999999999988754 66667777


Q ss_pred             hHHHHHHHhcccCCCCeeEEEEcCC
Q 026461          132 LSVLDQLLKYSENEGSFDYAFVDAD  156 (238)
Q Consensus       132 ~~~l~~~~~~~~~~~~fD~V~~d~~  156 (238)
                      ... +..    +.-...-.|++|+.
T Consensus       274 ~~t-~~~----~~~~~v~~iL~Dps  293 (413)
T KOG2360|consen  274 LNT-ATP----EKFRDVTYILVDPS  293 (413)
T ss_pred             cCC-CCc----ccccceeEEEeCCC
Confidence            654 221    11245667777753

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=95.28  E-value=0.026  Score=48.15  Aligned_cols=97  Identities=15%  Similarity=0.086  Sum_probs=74.0

Q ss_pred             CCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHH-------HHHHHHHHcCCC
Q 026461           49 WAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYE-------IGLPIIKKAGVD  121 (238)
Q Consensus        49 ~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~-------~a~~~~~~~~~~  121 (238)
                      .+....+++..-+.+.++...+++.|.|=-.|+|......|..   ++.|+|.||+-.++.       ..+.|+++.|..
T Consensus       187 iGnTSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~  263 (421)
T KOG2671|consen  187 IGNTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS  263 (421)
T ss_pred             cCCcccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCc
Confidence            4445567778888888888888899999999999987776653   689999999887765       457899999965


Q ss_pred             C-cEEEEecchhHH-HHHHHhcccCCCCeeEEEEcC
Q 026461          122 H-KINFIESEALSV-LDQLLKYSENEGSFDYAFVDA  155 (238)
Q Consensus       122 ~-~v~~~~~d~~~~-l~~~~~~~~~~~~fD~V~~d~  155 (238)
                      + -+.++.+|...- +..       ...||.|++|.
T Consensus       264 ~~fldvl~~D~sn~~~rs-------n~~fDaIvcDP  292 (421)
T KOG2671|consen  264 SQFLDVLTADFSNPPLRS-------NLKFDAIVCDP  292 (421)
T ss_pred             chhhheeeecccCcchhh-------cceeeEEEeCC
Confidence            4 356777776542 221       47999999984

>PRK13699 putative methylase; Provisional

Probab=95.26  E-value=0.036  Score=45.11  Aligned_cols=51  Identities=16%  Similarity=0.264  Sum_probs=39.7

Q ss_pred             EEEEecchhHHHHHHHhcccCCCCeeEEEEcCCcc------------------chHHHHHHHHhccCCCeEEEE
Q 026461          124 INFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------------------NYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       124 v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~------------------~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ++++++|+.+.++.+.     .+++|+|+.|.+-.                  .....+.++.+.|||||.+++
T Consensus         2 ~~l~~gD~le~l~~lp-----d~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i   70 (227)
T PRK13699          2 SRFILGNCIDVMARFP-----DNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS   70 (227)
T ss_pred             CeEEechHHHHHHhCC-----ccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4688999999998874     68999999995321                  123567888899999998875

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=95.25  E-value=0.27  Score=41.67  Aligned_cols=96  Identities=14%  Similarity=0.146  Sum_probs=68.8

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .+.+|.-||-| .|..+..+|..+  ++.|+-+|+|.+.+.+....+     ..+++..-.+...+....       .+.
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~f-----~~rv~~~~st~~~iee~v-------~~a  232 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDLF-----GGRVHTLYSTPSNIEEAV-------KKA  232 (371)
T ss_pred             CCccEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHhh-----CceeEEEEcCHHHHHHHh-------hhc
Confidence            34578888877 688888888877  589999999999888777665     356888877776665554       688


Q ss_pred             eEEEEc---CCccchHHHHHHHHhccCCCeEEEE
Q 026461          149 DYAFVD---ADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       149 D~V~~d---~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      |+|+-.   .......-..+++.+.++||++|+=
T Consensus       233 DlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivD  266 (371)
T COG0686         233 DLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVD  266 (371)
T ss_pred             cEEEEEEEecCCCCceehhHHHHHhcCCCcEEEE
Confidence            998743   1222233345666788899888763

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=95.10  E-value=0.23  Score=42.79  Aligned_cols=94  Identities=12%  Similarity=0.092  Sum_probs=57.5

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           69 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        69 ~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      .+..+||-+|+| .|..++.++.......+|+++|.+++..+.+++    .+.   . ... +  +. ..       ...
T Consensus       162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~-~~~-~--~~-~~-------~~g  222 (341)
T cd08237         162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---T-YLI-D--DI-PE-------DLA  222 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---e-eeh-h--hh-hh-------ccC
Confidence            456789999975 233445556542214689999999888887764    221   1 111 1  11 11       235


Q ss_pred             eeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      +|+||-..........+....++|++||.+++-.
T Consensus       223 ~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G  256 (341)
T cd08237         223 VDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMG  256 (341)
T ss_pred             CcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEe
Confidence            8988743332224567778889999999988644

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=95.10  E-value=0.13  Score=43.77  Aligned_cols=94  Identities=14%  Similarity=0.039  Sum_probs=63.1

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEE
Q 026461           73 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  152 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~  152 (238)
                      +++|+-||.|+.+.-|..+-  -..+.++|+++.+++.-+.|+.        ....+|+.++-....     .+.+|+++
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l-----~~~~D~l~   66 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDL-----PKDVDLLI   66 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHH-----HHT-SEEE
T ss_pred             cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc--------ccccccccccccccc-----cccceEEE
Confidence            68999999999999888753  2478999999999999998873        778888887643321     11599998


Q ss_pred             EcCCccc-----------------hHHHHHHHHhccCCCeEEEEeccc
Q 026461          153 VDADKDN-----------------YCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       153 ~d~~~~~-----------------~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ...+++.                 +..+++.+ +.++| -+++++|+.
T Consensus        67 ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v-~~~~P-k~~~~ENV~  112 (335)
T PF00145_consen   67 GGPPCQGFSIAGKRKGFDDPRNSLFFEFLRIV-KELKP-KYFLLENVP  112 (335)
T ss_dssp             EE---TTTSTTSTHHCCCCHTTSHHHHHHHHH-HHHS--SEEEEEEEG
T ss_pred             eccCCceEeccccccccccccchhhHHHHHHH-hhccc-eEEEecccc
Confidence            7643222                 23344443 56788 567778875

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.09  E-value=0.043  Score=44.40  Aligned_cols=85  Identities=9%  Similarity=0.275  Sum_probs=57.1

Q ss_pred             CEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHc-CCCCcEEEE-ecchhHHHHHHHhcccCCCCe
Q 026461           72 KKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFI-ESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~v~~~-~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      -++||||+|.  +.++=+-.. ..+-+++|.|+++..++.|+.++..+ ++...+++. +-|...+++....   ..+.|
T Consensus        80 i~~LDIGvGA--nCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig---~nE~y  154 (292)
T COG3129          80 IRILDIGVGA--NCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIG---KNERY  154 (292)
T ss_pred             eEEEeeccCc--ccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccccc---cccee
Confidence            3789999854  444433222 12458999999999999999999887 666667764 3444445544321   15899


Q ss_pred             eEEEEcCCccchH
Q 026461          149 DYAFVDADKDNYC  161 (238)
Q Consensus       149 D~V~~d~~~~~~~  161 (238)
                      |+..++.+.+...
T Consensus       155 d~tlCNPPFh~s~  167 (292)
T COG3129         155 DATLCNPPFHDSA  167 (292)
T ss_pred             eeEecCCCcchhH
Confidence            9999987644433

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=95.06  E-value=0.062  Score=43.08  Aligned_cols=80  Identities=20%  Similarity=0.243  Sum_probs=52.2

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH-HHHHHhcccCCCCeeE
Q 026461           72 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENEGSFDY  150 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-l~~~~~~~~~~~~fD~  150 (238)
                      -++|||||-+..+...-..    --.|+.||+++..                -.+.+.|..+. +|..     +.+.||+
T Consensus        53 lrlLEVGals~~N~~s~~~----~fdvt~IDLns~~----------------~~I~qqDFm~rplp~~-----~~e~Fdv  107 (219)
T PF11968_consen   53 LRLLEVGALSTDNACSTSG----WFDVTRIDLNSQH----------------PGILQQDFMERPLPKN-----ESEKFDV  107 (219)
T ss_pred             ceEEeecccCCCCcccccC----ceeeEEeecCCCC----------------CCceeeccccCCCCCC-----cccceeE
Confidence            5899999976665544332    3459999998742                23344454442 2221     2579999


Q ss_pred             EEEcC------CccchHHHHHHHHhccCCCeE
Q 026461          151 AFVDA------DKDNYCNYHERLMKLLKVGGI  176 (238)
Q Consensus       151 V~~d~------~~~~~~~~~~~~~~~L~~gG~  176 (238)
                      |.+.-      .+..--+++..+.++|+++|.
T Consensus       108 Is~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~  139 (219)
T PF11968_consen  108 ISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL  139 (219)
T ss_pred             EEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence            98763      233345688888899999999

>PRK11524 putative methyltransferase; Provisional

Probab=95.01  E-value=0.057  Score=45.49  Aligned_cols=53  Identities=23%  Similarity=0.360  Sum_probs=40.2

Q ss_pred             cEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCcc---c------------h----HHHHHHHHhccCCCeEEEEe
Q 026461          123 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---N------------Y----CNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       123 ~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~---~------------~----~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ..+++++|+.+.+..+.     .++||+|++|.+-.   .            +    ...+..+.++|+|||.+++.
T Consensus         8 ~~~i~~gD~~~~l~~l~-----~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~   79 (284)
T PRK11524          8 AKTIIHGDALTELKKIP-----SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM   79 (284)
T ss_pred             CCEEEeccHHHHHHhcc-----cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            35789999999887663     57999999996421   0            1    35677888999999988864

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.95  E-value=0.34  Score=42.42  Aligned_cols=106  Identities=17%  Similarity=0.182  Sum_probs=63.5

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhccc-------
Q 026461           72 KKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE-------  143 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~-------  143 (238)
                      .+|--||-  ||.++.+|-.+.. +.+|+|+|+++..++...+     |   ...+..-+..+.+.+....+.       
T Consensus        10 ~~I~ViGL--GYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G---~~~i~e~~~~~~v~~~v~~g~lraTtd~   79 (436)
T COG0677          10 ATIGVIGL--GYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----G---ESYIEEPDLDEVVKEAVESGKLRATTDP   79 (436)
T ss_pred             eEEEEEcc--ccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----C---cceeecCcHHHHHHHHHhcCCceEecCh
Confidence            46666766  6666666655532 4789999999998876653     2   233333333333333222110       


Q ss_pred             -CCCCeeEEEEcCC----------ccchHHHHHHHHhccCCCeEEEEeccccCcc
Q 026461          144 -NEGSFDYAFVDAD----------KDNYCNYHERLMKLLKVGGIAVYDNTLWGGT  187 (238)
Q Consensus       144 -~~~~fD~V~~d~~----------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~  187 (238)
                       ....-|++++.-+          .+......+.+.+.|++|-++++....++|.
T Consensus        80 ~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGT  134 (436)
T COG0677          80 EELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGT  134 (436)
T ss_pred             hhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCc
Confidence             0125566665311          1223455566678999999999999999885

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=94.92  E-value=0.44  Score=41.21  Aligned_cols=101  Identities=11%  Similarity=0.069  Sum_probs=63.6

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec-chhHHHHHHHhccc
Q 026461           67 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSE  143 (238)
Q Consensus        67 ~~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~l~~~~~~~~  143 (238)
                      ...+..+||-.|+  +.|..++.+|+..  +.+|++++.+++..+.+++.   .|...-+..... +..+.+....    
T Consensus       155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~----  225 (348)
T PLN03154        155 SPKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDAALKRYF----  225 (348)
T ss_pred             CCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHHHHHHHC----
Confidence            3456678999887  4777788888876  46899999888876666532   354322222211 3333333331    


Q ss_pred             CCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                       .+.+|+||-...    ...+..++++|+++|.+++-.
T Consensus       226 -~~gvD~v~d~vG----~~~~~~~~~~l~~~G~iv~~G  258 (348)
T PLN03154        226 -PEGIDIYFDNVG----GDMLDAALLNMKIHGRIAVCG  258 (348)
T ss_pred             -CCCcEEEEECCC----HHHHHHHHHHhccCCEEEEEC
Confidence             247998884322    246677889999999988644

>PRK11524 putative methyltransferase; Provisional

Probab=94.92  E-value=0.11  Score=43.82  Aligned_cols=56  Identities=11%  Similarity=0.094  Sum_probs=44.2

Q ss_pred             HHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHH
Q 026461           59 GQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK  117 (238)
Q Consensus        59 ~~~l~~l~~~--~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~  117 (238)
                      .+++..++..  .++..|||--+|+|..++...+.   +-+++|+|++++.++.|++.+..
T Consensus       195 ~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~l---gR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        195 EALLKRIILASSNPGDIVLDPFAGSFTTGAVAKAS---GRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh
Confidence            5566666553  46779999999999877765553   34899999999999999999854

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.85  E-value=0.43  Score=38.83  Aligned_cols=99  Identities=20%  Similarity=0.260  Sum_probs=61.4

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           69 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        69 ~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      .++.+||..|+|. |..+..++...  +.+|++++.+++..+.+++.    +...-+.....+..+.+. .    ...+.
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~-~----~~~~~  201 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKEL----GADHVIDYKEEDLEEELR-L----TGGGG  201 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHh----CCceeccCCcCCHHHHHH-H----hcCCC
Confidence            5677999999885 66777777765  47899999998776666432    322112222122222111 1    12468


Q ss_pred             eeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      +|+++.....   ...+..+.+.|+++|.++.-.
T Consensus       202 ~d~vi~~~~~---~~~~~~~~~~l~~~G~~v~~~  232 (271)
T cd05188         202 ADVVIDAVGG---PETLAQALRLLRPGGRIVVVG  232 (271)
T ss_pred             CCEEEECCCC---HHHHHHHHHhcccCCEEEEEc
Confidence            9999865432   245666778899999888643

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=94.83  E-value=0.23  Score=45.26  Aligned_cols=101  Identities=19%  Similarity=0.205  Sum_probs=59.1

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe---------------cchh
Q 026461           69 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE---------------SEAL  132 (238)
Q Consensus        69 ~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~---------------~d~~  132 (238)
                      .++.+++-+|+| .|..+..++..+.  ..|+.+|.++...+.+++    .|... +.+-.               .+..
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~----lGa~~-v~v~~~e~g~~~~gYa~~~s~~~~  234 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQS----MGAEF-LELDFKEEGGSGDGYAKVMSEEFI  234 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCeE-EeccccccccccccceeecCHHHH
Confidence            356799999998 5677777777764  579999999998777765    23211 11110               0111


Q ss_pred             H-HHHHHHhcccCCCCeeEEEEcC---CccchHHHHHHHHhccCCCeEEEE
Q 026461          133 S-VLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       133 ~-~l~~~~~~~~~~~~fD~V~~d~---~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      + ....+.+.   ...+|+||.-.   ......-..+...+.+|||++|+=
T Consensus       235 ~~~~~~~~e~---~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD  282 (511)
T TIGR00561       235 AAEMELFAAQ---AKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD  282 (511)
T ss_pred             HHHHHHHHHH---hCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence            1 01111111   36799997654   111212244566788999988663

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=94.78  E-value=0.38  Score=41.37  Aligned_cols=103  Identities=20%  Similarity=0.204  Sum_probs=60.0

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ..++.+||-.|+| .|..++.+|+... ...|++++.+++..+.+++    .|...-+.....+ .+.+..+.    ...
T Consensus       158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~-~~~~~~~~----~~~  227 (347)
T PRK10309        158 GCEGKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDINSEKLALAKS----LGAMQTFNSREMS-APQIQSVL----REL  227 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCceEecCcccC-HHHHHHHh----cCC
Confidence            3456789888875 4445566676654 2347899998887776643    3532111211112 12222221    134


Q ss_pred             CeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461          147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      .+|.+++|+.-  ....+....++|++||.+++-..
T Consensus       228 ~~d~~v~d~~G--~~~~~~~~~~~l~~~G~iv~~G~  261 (347)
T PRK10309        228 RFDQLILETAG--VPQTVELAIEIAGPRAQLALVGT  261 (347)
T ss_pred             CCCeEEEECCC--CHHHHHHHHHHhhcCCEEEEEcc
Confidence            68866666432  24566777899999999887543

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=94.73  E-value=0.048  Score=45.09  Aligned_cols=47  Identities=11%  Similarity=0.017  Sum_probs=37.7

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCC-------CCEEEEEeCCchhHHHHHHHHHH
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPE-------DGQITAIDVNRETYEIGLPIIKK  117 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~-------~~~v~~iD~~~~~~~~a~~~~~~  117 (238)
                      +-+|+|+|.|.|..+.-++..+..       ..+++.||+||...+.-++.+..
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            468999999999999999887752       25899999999999888888765

; PDB: 4F3N_A 1ZKD_B.

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=94.71  E-value=0.1  Score=41.73  Aligned_cols=52  Identities=13%  Similarity=0.144  Sum_probs=36.6

Q ss_pred             HHHHHHHHh--hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHH
Q 026461           59 GQLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLP  113 (238)
Q Consensus        59 ~~~l~~l~~--~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~  113 (238)
                      .+++..++.  ..++..|||.-||+|..+....+.   +-+.+|+|++++.++.|++
T Consensus       178 ~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l---~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  178 VELIERLIKASTNPGDIVLDPFAGSGTTAVAAEEL---GRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHT---T-EEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccceeeehhhhccChHHHHHHHc---CCeEEEEeCCHHHHHHhcC
Confidence            344444444  346779999999999887766653   3489999999999998875

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=94.62  E-value=0.36  Score=41.25  Aligned_cols=99  Identities=16%  Similarity=0.206  Sum_probs=58.1

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCE-EEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ..+..+||-+|+| .|..+..+++...  .+ |++++.+++..+.+++    .|...-+.....+ .+.+....    ..
T Consensus       161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G--~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~-~~~~~~~~----~~  229 (339)
T cd08239         161 VSGRDTVLVVGAGPVGLGALMLARALG--AEDVIGVDPSPERLELAKA----LGADFVINSGQDD-VQEIRELT----SG  229 (339)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHH----hCCCEEEcCCcch-HHHHHHHh----CC
Confidence            3456788888864 3445556666654  45 9999999887776654    3542212222222 22222221    13


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ..+|+||-...   ....+....+.|+++|.+++-
T Consensus       230 ~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~  261 (339)
T cd08239         230 AGADVAIECSG---NTAARRLALEAVRPWGRLVLV  261 (339)
T ss_pred             CCCCEEEECCC---CHHHHHHHHHHhhcCCEEEEE
Confidence            47999885432   233456667889999988863

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN02740 Alcohol dehydrogenase-like

Probab=94.47  E-value=0.54  Score=41.13  Aligned_cols=102  Identities=20%  Similarity=0.261  Sum_probs=60.4

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe--cchhHHHHHHHhccc
Q 026461           67 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSE  143 (238)
Q Consensus        67 ~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~l~~~~~~~~  143 (238)
                      ...+..+||-+|+| .|..++.+|+... ..+|+++|.+++..+.+++    .|...-+....  .+..+.+..+.    
T Consensus       195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~----  265 (381)
T PLN02740        195 NVQAGSSVAIFGLGAVGLAVAEGARARG-ASKIIGVDINPEKFEKGKE----MGITDFINPKDSDKPVHERIREMT----  265 (381)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCC-CCcEEEEcCChHHHHHHHH----cCCcEEEecccccchHHHHHHHHh----
Confidence            34566789999875 3445566666653 2379999999988887765    35422122111  11223333331    


Q ss_pred             CCCCeeEEEEcCCccchHHHHHHHHhccCCC-eEEEEec
Q 026461          144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN  181 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~  181 (238)
                       .+.+|+||-...   ....+......+++| |.+++-.
T Consensus       266 -~~g~dvvid~~G---~~~~~~~a~~~~~~g~G~~v~~G  300 (381)
T PLN02740        266 -GGGVDYSFECAG---NVEVLREAFLSTHDGWGLTVLLG  300 (381)
T ss_pred             -CCCCCEEEECCC---ChHHHHHHHHhhhcCCCEEEEEc
Confidence             237998875432   234566677788886 8777643

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=94.23  E-value=0.66  Score=39.88  Aligned_cols=113  Identities=21%  Similarity=0.324  Sum_probs=72.7

Q ss_pred             hHHHHHHHHHhhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec-chhHH
Q 026461           57 DAGQLMAMLLRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSV  134 (238)
Q Consensus        57 ~~~~~l~~l~~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~  134 (238)
                      ..+..+... +..+...|.-+||| .|.+++.-|.... ..+|+++|+++...+.|++.    |..+-++-... |..+.
T Consensus       173 G~Gav~nta-~v~~G~tvaV~GlGgVGlaaI~gA~~ag-A~~IiAvD~~~~Kl~~A~~f----GAT~~vn~~~~~~vv~~  246 (366)
T COG1062         173 GIGAVVNTA-KVEPGDTVAVFGLGGVGLAAIQGAKAAG-AGRIIAVDINPEKLELAKKF----GATHFVNPKEVDDVVEA  246 (366)
T ss_pred             ChHHhhhcc-cCCCCCeEEEEeccHhHHHHHHHHHHcC-CceEEEEeCCHHHHHHHHhc----CCceeecchhhhhHHHH
Confidence            344444433 35567789999997 5777777777665 78999999999999998864    54332322222 45555


Q ss_pred             HHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          135 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       135 l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      +..+.     .+..|.+|--.   ...+.++..+..+.++|..++-.+-
T Consensus       247 i~~~T-----~gG~d~~~e~~---G~~~~~~~al~~~~~~G~~v~iGv~  287 (366)
T COG1062         247 IVELT-----DGGADYAFECV---GNVEVMRQALEATHRGGTSVIIGVA  287 (366)
T ss_pred             HHHhc-----CCCCCEEEEcc---CCHHHHHHHHHHHhcCCeEEEEecC
Confidence            55552     44888886432   2234666666777778877775443

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=94.21  E-value=0.41  Score=41.28  Aligned_cols=107  Identities=21%  Similarity=0.222  Sum_probs=61.1

Q ss_pred             hcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           68 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        68 ~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ..+..+||-+|+|. |..++.+|....  .+|++++.+++..+.+++    .|...-+.....+..++.....+- ....
T Consensus       164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~-t~~~  236 (349)
T TIGR03201       164 LKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAF-AKAR  236 (349)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhh-cccC
Confidence            44567899999864 666677777764  589999999988877754    254221222221111222211100 0123


Q ss_pred             CeeE---EEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          147 SFDY---AFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       147 ~fD~---V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      .+|.   +++|+.  .....++.+.++|++||.+++-...
T Consensus       237 g~d~~~d~v~d~~--g~~~~~~~~~~~l~~~G~iv~~G~~  274 (349)
T TIGR03201       237 GLRSTGWKIFECS--GSKPGQESALSLLSHGGTLVVVGYT  274 (349)
T ss_pred             CCCCCcCEEEECC--CChHHHHHHHHHHhcCCeEEEECcC
Confidence            5652   344443  2244566677899999998875443

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PLN02827 Alcohol dehydrogenase-like

Probab=94.19  E-value=0.55  Score=41.10  Aligned_cols=102  Identities=22%  Similarity=0.238  Sum_probs=59.2

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe--cchhHHHHHHHhccc
Q 026461           67 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSE  143 (238)
Q Consensus        67 ~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~l~~~~~~~~  143 (238)
                      ...+..+||-.|+| .|..++.+++... ...|+++|.+++..+.+++    .|...-+....  .+..+.+..+.    
T Consensus       190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~----  260 (378)
T PLN02827        190 DVSKGSSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMT----  260 (378)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHh----
Confidence            34567789988874 3444555666553 3368999998887776644    35422122111  12223333331    


Q ss_pred             CCCCeeEEEEcCCccchHHHHHHHHhccCCC-eEEEEec
Q 026461          144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN  181 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~  181 (238)
                       .+.+|+|+-...   ....+....+.+++| |.+++-.
T Consensus       261 -~~g~d~vid~~G---~~~~~~~~l~~l~~g~G~iv~~G  295 (378)
T PLN02827        261 -GGGADYSFECVG---DTGIATTALQSCSDGWGLTVTLG  295 (378)
T ss_pred             -CCCCCEEEECCC---ChHHHHHHHHhhccCCCEEEEEC
Confidence             237998874332   233456677889998 9987643

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=94.17  E-value=0.13  Score=38.89  Aligned_cols=43  Identities=16%  Similarity=0.179  Sum_probs=28.7

Q ss_pred             EEccccc--HHHHHHH-hhCCCCCEEEEEeCCchhHHHHHHH--HHHc
Q 026461           76 EIGVFTG--YSLLLTA-LTIPEDGQITAIDVNRETYEIGLPI--IKKA  118 (238)
Q Consensus        76 eiG~G~G--~~t~~la-~~~~~~~~v~~iD~~~~~~~~a~~~--~~~~  118 (238)
                      |||++.|  .++.+++ ....+.++|+++|++|..++..+++  +.-.
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~   48 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN   48 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence            8999999  6666664 2344579999999999999999888  5443

; PDB: 2PY6_A.

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=93.98  E-value=0.41  Score=40.97  Aligned_cols=93  Identities=10%  Similarity=-0.078  Sum_probs=60.9

Q ss_pred             EEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEE
Q 026461           74 TIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFV  153 (238)
Q Consensus        74 vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~  153 (238)
                      |+|+.||.|+.+.-+..+-  ---+.++|+++.+++.-+.|+.     +  .++.+|+.++...-      ...+|+++.
T Consensus         1 vidLF~G~GG~~~Gl~~aG--~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~------~~~~dvl~g   65 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAG--FKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSD------IPDFDILLG   65 (315)
T ss_pred             CEEEecCccHHHHHHHHcC--CeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhh------CCCcCEEEe
Confidence            5899999999998887642  2346789999999998888752     2  44567877764321      256899986


Q ss_pred             cCCccc-----------------hHHHHHHHHhccCCCeEEEEeccc
Q 026461          154 DADKDN-----------------YCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       154 d~~~~~-----------------~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ..++..                 +..+++. .+.++| -+++++|+.
T Consensus        66 g~PCq~fS~ag~~~~~~d~r~~L~~~~~r~-i~~~~P-~~~v~ENV~  110 (315)
T TIGR00675        66 GFPCQPFSIAGKRKGFEDTRGTLFFEIVRI-LKEKKP-KFFLLENVK  110 (315)
T ss_pred             cCCCcccchhcccCCCCCchhhHHHHHHHH-HhhcCC-CEEEeeccH
Confidence            532211                 1223333 345677 478888874

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00518 alaDH alanine dehydrogenase

Probab=93.93  E-value=0.56  Score=41.11  Aligned_cols=104  Identities=17%  Similarity=0.096  Sum_probs=58.6

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      ++.+|+-+|+| .|..+...+..+.  .+|+.+|.+++..+.+...+   +  ..+.....+..+ +.+.      -..+
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~~~---g--~~v~~~~~~~~~-l~~~------l~~a  231 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDAEF---G--GRIHTRYSNAYE-IEDA------VKRA  231 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHhc---C--ceeEeccCCHHH-HHHH------HccC
Confidence            56789999997 5666666666653  58999999987766554432   2  112222222222 3332      2578


Q ss_pred             eEEEEcCCc--cchHH-HHHHHHhccCCCeEEEEeccccCcc
Q 026461          149 DYAFVDADK--DNYCN-YHERLMKLLKVGGIAVYDNTLWGGT  187 (238)
Q Consensus       149 D~V~~d~~~--~~~~~-~~~~~~~~L~~gG~lv~~~~~~~g~  187 (238)
                      |+|+.....  ...+. .-+.....+++|++++-=.+-..|.
T Consensus       232 DvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d~GG~  273 (370)
T TIGR00518       232 DLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAIDQGGC  273 (370)
T ss_pred             CEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEecCCCCC
Confidence            999975421  11122 2245556788887766433333443

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=93.90  E-value=0.91  Score=38.40  Aligned_cols=100  Identities=10%  Similarity=0.051  Sum_probs=62.3

Q ss_pred             HhhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhccc
Q 026461           66 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE  143 (238)
Q Consensus        66 ~~~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~  143 (238)
                      ....++.+||-.|.  +.|..++.+|...  +.+|++++.+++..+.+++    .|...-+.....+..+.+..+.    
T Consensus       139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~~----  208 (329)
T cd08294         139 CKPKAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEAA----  208 (329)
T ss_pred             cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHC----
Confidence            33456678888873  5666777788876  4689999988887776655    3542212222223333333331    


Q ss_pred             CCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                       ...+|+|+-...    ...+...++.|+++|.++.-
T Consensus       209 -~~gvd~vld~~g----~~~~~~~~~~l~~~G~iv~~  240 (329)
T cd08294         209 -PDGIDCYFDNVG----GEFSSTVLSHMNDFGRVAVC  240 (329)
T ss_pred             -CCCcEEEEECCC----HHHHHHHHHhhccCCEEEEE
Confidence             357998883222    24567778999999998753

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08230 glucose_DH Glucose dehydrogenase

Probab=93.88  E-value=0.44  Score=41.15  Aligned_cols=96  Identities=14%  Similarity=0.128  Sum_probs=58.1

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeC---CchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           69 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDV---NRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        69 ~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~---~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      .++.+||-+|+| .|..+..+|+...  .+|++++.   +++..+.+++    .|.. .+.....+..+ . ..      
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~~----~Ga~-~v~~~~~~~~~-~-~~------  235 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVEE----LGAT-YVNSSKTPVAE-V-KL------  235 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHH----cCCE-EecCCccchhh-h-hh------
Confidence            356789999886 3556677777654  58999987   5666555543    3532 12111111111 1 11      


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      ...+|+||--..   ....+....+.|+++|.+++-..
T Consensus       236 ~~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         236 VGEFDLIIEATG---VPPLAFEALPALAPNGVVILFGV  270 (355)
T ss_pred             cCCCCEEEECcC---CHHHHHHHHHHccCCcEEEEEec
Confidence            357998886543   23466777899999998887443

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=93.85  E-value=1.1  Score=38.96  Aligned_cols=102  Identities=20%  Similarity=0.294  Sum_probs=60.4

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe--cchhHHHHHHHhccc
Q 026461           67 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSE  143 (238)
Q Consensus        67 ~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~l~~~~~~~~  143 (238)
                      ......+||-.|+| .|..++.+|+... ..+|+++|.+++..+.+++    .|...-+....  .+..+.+.++.    
T Consensus       182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~----  252 (368)
T TIGR02818       182 KVEEGDTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEIT----  252 (368)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHh----
Confidence            34556789999875 3555666777653 2379999999988887755    35422122111  11222222321    


Q ss_pred             CCCCeeEEEEcCCccchHHHHHHHHhccCCC-eEEEEec
Q 026461          144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN  181 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~  181 (238)
                       .+.+|+|+-...   ....+....+.++++ |.++.-.
T Consensus       253 -~~g~d~vid~~G---~~~~~~~~~~~~~~~~G~~v~~g  287 (368)
T TIGR02818       253 -DGGVDYSFECIG---NVNVMRAALECCHKGWGESIIIG  287 (368)
T ss_pred             -CCCCCEEEECCC---CHHHHHHHHHHhhcCCCeEEEEe
Confidence             237898874332   244566677888886 8777543

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PRK13699 putative methylase; Provisional

Probab=93.85  E-value=0.28  Score=39.96  Aligned_cols=56  Identities=7%  Similarity=0.029  Sum_probs=42.8

Q ss_pred             HHHHHHHh--hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc
Q 026461           60 QLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA  118 (238)
Q Consensus        60 ~~l~~l~~--~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~  118 (238)
                      +++..++.  ..++..|||--||+|..+....+.   +-+++|+|++++..+.+.+.+...
T Consensus       151 ~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        151 TSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             HHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHH
Confidence            34444443  346779999999999887766653   458999999999999999888653

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=93.83  E-value=0.72  Score=39.66  Aligned_cols=104  Identities=16%  Similarity=0.216  Sum_probs=62.8

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           67 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        67 ~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ...+..+||-.|+| .|..++.+++... ...|++++.+++..+.+++    .|...-+.....+..+.+..+.    ..
T Consensus       163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~----~~  233 (351)
T cd08285         163 NIKLGDTVAVFGIGPVGLMAVAGARLRG-AGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLT----GG  233 (351)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHh----CC
Confidence            34556788888865 4556667777664 3469999999877766664    3542222222223222222221    13


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      ..+|+|+-....   ...+..++++|+++|.++.-..
T Consensus       234 ~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g~  267 (351)
T cd08285         234 KGVDAVIIAGGG---QDTFEQALKVLKPGGTISNVNY  267 (351)
T ss_pred             CCCcEEEECCCC---HHHHHHHHHHhhcCCEEEEecc
Confidence            579988854322   3456778899999998886433

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08293 PTGR2 Prostaglandin reductase

Probab=93.79  E-value=0.97  Score=38.65  Aligned_cols=95  Identities=13%  Similarity=0.135  Sum_probs=58.9

Q ss_pred             CEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           72 KKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        72 ~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      .+||-.|+  |.|..++.+|+... ..+|++++.+++..+.+++.   .|...-+.....+..+.+..+.     ...+|
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~G-~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~~-----~~gvd  226 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLLG-CSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLRELC-----PEGVD  226 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHC-----CCCce
Confidence            68888885  56777788888763 22799999888776666553   3543212222223333333331     35799


Q ss_pred             EEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          150 YAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       150 ~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      +|+-... .   ..+...+++|+++|.++.
T Consensus       227 ~vid~~g-~---~~~~~~~~~l~~~G~iv~  252 (345)
T cd08293         227 VYFDNVG-G---EISDTVISQMNENSHIIL  252 (345)
T ss_pred             EEEECCC-c---HHHHHHHHHhccCCEEEE
Confidence            8884322 1   234677899999998885

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=93.74  E-value=0.92  Score=39.02  Aligned_cols=103  Identities=19%  Similarity=0.232  Sum_probs=65.8

Q ss_pred             HhhcCCCEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhccc
Q 026461           66 LRLVNAKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE  143 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G--~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~  143 (238)
                      .+.....+||-.|..  .|..++.||+.+.  ..++.+--+++..+.+    .+.|.+.-+.+...|..+.+.++.    
T Consensus       138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~~~----~~lGAd~vi~y~~~~~~~~v~~~t----  207 (326)
T COG0604         138 AGLKPGETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLELL----KELGADHVINYREEDFVEQVRELT----  207 (326)
T ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHHHH----HhcCCCEEEcCCcccHHHHHHHHc----
Confidence            345567899999854  4556677888764  3667776666554433    344654445666666666665552    


Q ss_pred             CCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461          144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      ....+|+|+-.-.    ...+......|+++|.++.-..
T Consensus       208 ~g~gvDvv~D~vG----~~~~~~~l~~l~~~G~lv~ig~  242 (326)
T COG0604         208 GGKGVDVVLDTVG----GDTFAASLAALAPGGRLVSIGA  242 (326)
T ss_pred             CCCCceEEEECCC----HHHHHHHHHHhccCCEEEEEec
Confidence            1247999985432    4455557788899998887443

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=93.66  E-value=1.1  Score=37.24  Aligned_cols=100  Identities=18%  Similarity=0.190  Sum_probs=59.2

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      +..+||-+|+| .|..+..+|+... ..+|+.+|.+++..+.+++    .|...-+..  .+..+.+..+.    ....+
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~--~~~~~~~~~~~----~~~g~  188 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAG-AARVVAADPSPDRRELALS----FGATALAEP--EVLAERQGGLQ----NGRGV  188 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCcEecCc--hhhHHHHHHHh----CCCCC
Confidence            56789988875 4555566776653 3359999998887777665    353211111  11112222221    13469


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      |+|+-...   ....++.+.++|+++|.++.-...
T Consensus       189 d~vid~~G---~~~~~~~~~~~l~~~G~iv~~G~~  220 (280)
T TIGR03366       189 DVALEFSG---ATAAVRACLESLDVGGTAVLAGSV  220 (280)
T ss_pred             CEEEECCC---ChHHHHHHHHHhcCCCEEEEeccC
Confidence            99874332   244566778899999998875543

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=93.61  E-value=1.5  Score=37.22  Aligned_cols=100  Identities=11%  Similarity=0.072  Sum_probs=61.8

Q ss_pred             HhhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec-chhHHHHHHHhcc
Q 026461           66 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYS  142 (238)
Q Consensus        66 ~~~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~l~~~~~~~  142 (238)
                      ....+..+||-.|.  +.|..++.+++..  +.+|++++.+++..+.+++    .|...-+..... +..+.+...    
T Consensus       134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~----  203 (325)
T TIGR02825       134 CGVKGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKA----  203 (325)
T ss_pred             hCCCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHh----
Confidence            34556678988884  4777778888875  4689999988887776653    354221222211 222233332    


Q ss_pred             cCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          143 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       143 ~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                       ..+.+|+||-...    ...+...+++|+++|.++.-
T Consensus       204 -~~~gvdvv~d~~G----~~~~~~~~~~l~~~G~iv~~  236 (325)
T TIGR02825       204 -SPDGYDCYFDNVG----GEFSNTVIGQMKKFGRIAIC  236 (325)
T ss_pred             -CCCCeEEEEECCC----HHHHHHHHHHhCcCcEEEEe
Confidence             1357998884322    13457778999999998864

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=93.60  E-value=0.5  Score=42.34  Aligned_cols=96  Identities=16%  Similarity=0.104  Sum_probs=65.5

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEE
Q 026461           73 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  152 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~  152 (238)
                      +++.+|||.--....+-+..  -..|+.+|+|+-.++.....-...  ....++...|+...  .     ++.++||+|+
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~~d~~~l--~-----fedESFdiVI  119 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNAKE--RPEMQMVEMDMDQL--V-----FEDESFDIVI  119 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhccccC--CcceEEEEecchhc--c-----CCCcceeEEE
Confidence            79999998877666665542  357999999999888776543211  23467777777654  2     2368999887


Q ss_pred             EcCC-------------ccchHHHHHHHHhccCCCeEEEE
Q 026461          153 VDAD-------------KDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       153 ~d~~-------------~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      .-+.             .......+..+.+.|++||..+.
T Consensus       120 dkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s  159 (482)
T KOG2352|consen  120 DKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS  159 (482)
T ss_pred             ecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence            4211             12234567788899999997554

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=93.59  E-value=1.6  Score=40.52  Aligned_cols=39  Identities=18%  Similarity=0.249  Sum_probs=34.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCch
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE  106 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~  106 (238)
                      +.+...|||+||..|.+..-.++.+|.++-|+|+|+-|-
T Consensus        42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi   80 (780)
T KOG1098|consen   42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI   80 (780)
T ss_pred             ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence            446678999999999999999999998899999999764

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=93.54  E-value=0.32  Score=41.20  Aligned_cols=35  Identities=29%  Similarity=0.507  Sum_probs=27.1

Q ss_pred             CCCeeEEEEc---CCccchHHHHHHHHhccCCCeEEEE
Q 026461          145 EGSFDYAFVD---ADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       145 ~~~fD~V~~d---~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      .+.||+|+..   ...++..++++.+...|+|||+.|=
T Consensus       257 ~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiN  294 (369)
T KOG2798|consen  257 AGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWIN  294 (369)
T ss_pred             CCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEe
Confidence            4579998532   2356788999999999999998764

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=93.52  E-value=0.52  Score=40.04  Aligned_cols=88  Identities=18%  Similarity=0.128  Sum_probs=51.4

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCC---CEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           72 KKTIEIGVFTGYSLLLTALTIPED---GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~~~---~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .+|.-||+|  ..+..++..+...   .+|+++|.+++..+.+++    .|...  . ...+..    ..      ....
T Consensus         7 ~~I~IIG~G--~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~--~-~~~~~~----~~------~~~a   67 (307)
T PRK07502          7 DRVALIGIG--LIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGD--R-VTTSAA----EA------VKGA   67 (307)
T ss_pred             cEEEEEeeC--HHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCc--e-ecCCHH----HH------hcCC
Confidence            578889875  4444444333212   389999999887666543    23211  1 111211    11      2467


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEE
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAV  178 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv  178 (238)
                      |+|++..+.......++.+.+.+++|++++
T Consensus        68 DvViiavp~~~~~~v~~~l~~~l~~~~iv~   97 (307)
T PRK07502         68 DLVILCVPVGASGAVAAEIAPHLKPGAIVT   97 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHhhCCCCCEEE
Confidence            888887765555666677767778876544

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=93.52  E-value=1.4  Score=37.63  Aligned_cols=100  Identities=11%  Similarity=0.080  Sum_probs=62.5

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec-chhHHHHHHHhccc
Q 026461           67 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSE  143 (238)
Q Consensus        67 ~~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~l~~~~~~~~  143 (238)
                      ...++.+||-.|+  |.|..++.+|+..  +.+|+++..+++..+.+++.   .|...-+..... +..+.+....    
T Consensus       148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~----  218 (338)
T cd08295         148 KPKKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYF----  218 (338)
T ss_pred             CCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhC----
Confidence            3456778998886  4666777788875  46899998888877766652   254222222111 2323333321    


Q ss_pred             CCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                       ...+|+|+-...    ...+..++++|+++|.++.-
T Consensus       219 -~~gvd~v~d~~g----~~~~~~~~~~l~~~G~iv~~  250 (338)
T cd08295         219 -PNGIDIYFDNVG----GKMLDAVLLNMNLHGRIAAC  250 (338)
T ss_pred             -CCCcEEEEECCC----HHHHHHHHHHhccCcEEEEe
Confidence             257999884322    24567788999999988853

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=93.47  E-value=0.42  Score=41.34  Aligned_cols=49  Identities=20%  Similarity=0.055  Sum_probs=40.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-------CCCEEEEEeCCchhHHHHHHHHHHcC
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIP-------EDGQITAIDVNRETYEIGLPIIKKAG  119 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~-------~~~~v~~iD~~~~~~~~a~~~~~~~~  119 (238)
                      +-.++|||.|.|....-++..+.       ...++..||+|++..+.-++.++...
T Consensus        78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~  133 (370)
T COG1565          78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE  133 (370)
T ss_pred             CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence            45799999999999988887652       25789999999999888888876543

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=93.46  E-value=0.84  Score=38.98  Aligned_cols=102  Identities=19%  Similarity=0.210  Sum_probs=59.0

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           67 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        67 ~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ...++.+||..|+| .|..++.+|+... ..++++++.++...+.+++    .+...-+.....+..+.+..+.    ..
T Consensus       164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~----~~  234 (347)
T cd05278         164 GIKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELT----GG  234 (347)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHc----CC
Confidence            34456788887764 4666677777653 2478899887766665553    2422112222222223333321    13


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ..+|+++-....   ...+...++.|+++|.++.-
T Consensus       235 ~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~  266 (347)
T cd05278         235 RGVDCVIEAVGF---EETFEQAVKVVRPGGTIANV  266 (347)
T ss_pred             CCCcEEEEccCC---HHHHHHHHHHhhcCCEEEEE
Confidence            579988843221   24667778899999988753

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=93.43  E-value=2.2  Score=38.00  Aligned_cols=105  Identities=17%  Similarity=0.176  Sum_probs=58.7

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcc-----cCC
Q 026461           72 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS-----ENE  145 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~-----~~~  145 (238)
                      ++|.-||.|.  .+..+|..+. .+.+|+++|.+++.++..+.     |.   +.+...+..+.+......+     ...
T Consensus         4 ~kI~VIGlG~--~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~-----g~---~~~~e~~l~~~l~~~~~~g~l~~~~~~   73 (415)
T PRK11064          4 ETISVIGLGY--IGLPTAAAFASRQKQVIGVDINQHAVDTINR-----GE---IHIVEPDLDMVVKTAVEGGYLRATTTP   73 (415)
T ss_pred             cEEEEECcch--hhHHHHHHHHhCCCEEEEEeCCHHHHHHHHC-----CC---CCcCCCCHHHHHHHHhhcCceeeeccc
Confidence            5688888854  4444444332 14789999999988775321     21   2222222222222111000     001


Q ss_pred             CCeeEEEEcCCc----------cchHHHHHHHHhccCCCeEEEEeccccCc
Q 026461          146 GSFDYAFVDADK----------DNYCNYHERLMKLLKVGGIAVYDNTLWGG  186 (238)
Q Consensus       146 ~~fD~V~~d~~~----------~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (238)
                      ..-|+||+.-+.          .......+.+.+.+++|.+++.......|
T Consensus        74 ~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pg  124 (415)
T PRK11064         74 EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVG  124 (415)
T ss_pred             ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence            356899886443          23445567777889998888887776555

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=93.39  E-value=0.64  Score=31.88  Aligned_cols=85  Identities=11%  Similarity=0.030  Sum_probs=53.9

Q ss_pred             EEEEcccccHHHHHHHhhCCC-C---CEEE-EEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           74 TIEIGVFTGYSLLLTALTIPE-D---GQIT-AIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        74 vLeiG~G~G~~t~~la~~~~~-~---~~v~-~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      |.=||+  |..+..++..+-. +   .+|+ +.+.+++..+...+.+   +    +.+...+..+.+.          .-
T Consensus         2 I~iIG~--G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~---~----~~~~~~~~~~~~~----------~a   62 (96)
T PF03807_consen    2 IGIIGA--GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY---G----VQATADDNEEAAQ----------EA   62 (96)
T ss_dssp             EEEEST--SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC---T----TEEESEEHHHHHH----------HT
T ss_pred             EEEECC--CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh---c----cccccCChHHhhc----------cC
Confidence            455665  6666666655422 2   5888 4499998877665542   2    4555545555543          45


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEE
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAV  178 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv  178 (238)
                      |+||+.-.+....+.++.+ ..+.++.+++
T Consensus        63 dvvilav~p~~~~~v~~~i-~~~~~~~~vi   91 (96)
T PF03807_consen   63 DVVILAVKPQQLPEVLSEI-PHLLKGKLVI   91 (96)
T ss_dssp             SEEEE-S-GGGHHHHHHHH-HHHHTTSEEE
T ss_pred             CEEEEEECHHHHHHHHHHH-hhccCCCEEE
Confidence            8999998888999998888 6666655554

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=93.33  E-value=0.66  Score=38.75  Aligned_cols=97  Identities=15%  Similarity=0.191  Sum_probs=68.0

Q ss_pred             cCCCEEEEEcccccHHHHH-HHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           69 VNAKKTIEIGVFTGYSLLL-TALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~-la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++.|+-+|-- -..++. ++..+|  .+|..+|+++..++...+..++.|+. +++.+.-|.+..+|+-.     ...
T Consensus       151 L~gK~I~vvGDD-DLtsia~aLt~mp--k~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~plpe~~-----~~k  221 (354)
T COG1568         151 LEGKEIFVVGDD-DLTSIALALTGMP--KRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRNPLPEDL-----KRK  221 (354)
T ss_pred             cCCCeEEEEcCc-hhhHHHHHhcCCC--ceEEEEechHHHHHHHHHHHHHhCcc-chhheeehhcccChHHH-----Hhh
Confidence            356789999943 333343 344454  68999999999999999999999984 48888889888776543     579


Q ss_pred             eeEEEEcCC--ccchHHHHHHHHhccCCC
Q 026461          148 FDYAFVDAD--KDNYCNYHERLMKLLKVG  174 (238)
Q Consensus       148 fD~V~~d~~--~~~~~~~~~~~~~~L~~g  174 (238)
                      ||+++-|.+  ......|+..=...|+.-
T Consensus       222 FDvfiTDPpeTi~alk~FlgRGI~tLkg~  250 (354)
T COG1568         222 FDVFITDPPETIKALKLFLGRGIATLKGE  250 (354)
T ss_pred             CCeeecCchhhHHHHHHHHhccHHHhcCC
Confidence            999998863  222334444444566654

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=93.28  E-value=0.21  Score=38.49  Aligned_cols=45  Identities=16%  Similarity=0.020  Sum_probs=33.5

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHH
Q 026461           67 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLP  113 (238)
Q Consensus        67 ~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~  113 (238)
                      ...+|.+|+-+|.| .|..+..++..++  .+++.+|..+...+..+.
T Consensus        16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lG--a~v~~~d~~~~~~~~~~~   61 (168)
T PF01262_consen   16 GGVPPAKVVVTGAGRVGQGAAEIAKGLG--AEVVVPDERPERLRQLES   61 (168)
T ss_dssp             TEE-T-EEEEESTSHHHHHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCHHHHHHHHHHhHCC--CEEEeccCCHHHHHhhhc
Confidence            34578899999998 5777788888884  799999999887766554

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=93.25  E-value=0.44  Score=41.89  Aligned_cols=83  Identities=22%  Similarity=0.155  Sum_probs=52.7

Q ss_pred             CEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhcccCCCC
Q 026461           72 KKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGS  147 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~~~~~~~  147 (238)
                      ++||-||||  ..+...+..+.  ...+|+..|.+++.++.+.....     .+++.++.|+.+.  +.++      -..
T Consensus         2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~l------i~~   68 (389)
T COG1748           2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVAL------IKD   68 (389)
T ss_pred             CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHH------Hhc
Confidence            579999994  44444333321  13799999999988887766531     3688888787653  4344      256


Q ss_pred             eeEEEEcCCccchHHHHHHH
Q 026461          148 FDYAFVDADKDNYCNYHERL  167 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~  167 (238)
                      +|+|+.-.+.......++.+
T Consensus        69 ~d~VIn~~p~~~~~~i~ka~   88 (389)
T COG1748          69 FDLVINAAPPFVDLTILKAC   88 (389)
T ss_pred             CCEEEEeCCchhhHHHHHHH
Confidence            69998766544444444333

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=93.04  E-value=3.5  Score=37.46  Aligned_cols=102  Identities=17%  Similarity=0.080  Sum_probs=56.4

Q ss_pred             EEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCchhHHHHHHHHHH---cCC--------CCcEEEEecchhHHHHHH
Q 026461           73 KTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKK---AGV--------DHKINFIESEALSVLDQL  138 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~---~~~--------~~~v~~~~~d~~~~l~~~  138 (238)
                      +|.-||+|..+  ..+|..+..   +.+|+++|++++.++..++....   .++        ..++.+ ..|..+.    
T Consensus         3 ~I~ViG~GyvG--l~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~-t~~~~~~----   75 (473)
T PLN02353          3 KICCIGAGYVG--GPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF-STDVEKH----   75 (473)
T ss_pred             EEEEECCCHHH--HHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE-EcCHHHH----
Confidence            57788875444  443433321   36799999999988876542100   000        001111 1121111    


Q ss_pred             HhcccCCCCeeEEEEcCC-cc--------------chHHHHHHHHhccCCCeEEEEeccccCcc
Q 026461          139 LKYSENEGSFDYAFVDAD-KD--------------NYCNYHERLMKLLKVGGIAVYDNTLWGGT  187 (238)
Q Consensus       139 ~~~~~~~~~fD~V~~d~~-~~--------------~~~~~~~~~~~~L~~gG~lv~~~~~~~g~  187 (238)
                            -..-|++|+.-+ +.              ......+.+.+.|++|-++++......|.
T Consensus        76 ------i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gt  133 (473)
T PLN02353         76 ------VAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT  133 (473)
T ss_pred             ------HhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCCh
Confidence                  145688877421 11              23445566678889988889888887664

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=92.98  E-value=1.6  Score=37.84  Aligned_cols=103  Identities=18%  Similarity=0.285  Sum_probs=60.8

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec--chhHHHHHHHhccc
Q 026461           67 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYSE  143 (238)
Q Consensus        67 ~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~l~~~~~~~~  143 (238)
                      ...+..+||-+|+| .|..+..+|+... ..+|++++.+++..+.+++    .|...-+.....  +..+.+..+.    
T Consensus       183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~----  253 (368)
T cd08300         183 KVEPGSTVAVFGLGAVGLAVIQGAKAAG-ASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMT----  253 (368)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHh----
Confidence            34567789888864 4445566777654 2379999999988777654    354221222111  1223333331    


Q ss_pred             CCCCeeEEEEcCCccchHHHHHHHHhccCCC-eEEEEecc
Q 026461          144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT  182 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  182 (238)
                       .+.+|+|+-...   ....+....++|+++ |.++.-..
T Consensus       254 -~~g~d~vid~~g---~~~~~~~a~~~l~~~~G~~v~~g~  289 (368)
T cd08300         254 -DGGVDYTFECIG---NVKVMRAALEACHKGWGTSVIIGV  289 (368)
T ss_pred             -CCCCcEEEECCC---ChHHHHHHHHhhccCCCeEEEEcc
Confidence             247998884322   134566677889887 87776443

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=92.93  E-value=0.67  Score=33.96  Aligned_cols=89  Identities=16%  Similarity=0.105  Sum_probs=47.4

Q ss_pred             HHHHhhcCCCEEEEEcccccHHH-HHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhc
Q 026461           63 AMLLRLVNAKKTIEIGVFTGYSL-LLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY  141 (238)
Q Consensus        63 ~~l~~~~~~~~vLeiG~G~G~~t-~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~  141 (238)
                      ...++..+..+|+|+|.|.=... ..|.+.   +..|+++|+.+.   .+.         ..++++.-|+.+--..+   
T Consensus         6 ~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~---G~dV~~tDi~~~---~a~---------~g~~~v~DDif~P~l~i---   67 (127)
T PF03686_consen    6 EYIARLNNYGKIVEVGIGFNPEVAKKLKER---GFDVIATDINPR---KAP---------EGVNFVVDDIFNPNLEI---   67 (127)
T ss_dssp             HHHHHHS-SSEEEEET-TT--HHHHHHHHH---S-EEEEE-SS-S----------------STTEE---SSS--HHH---
T ss_pred             HHHHHhCCCCcEEEECcCCCHHHHHHHHHc---CCcEEEEECccc---ccc---------cCcceeeecccCCCHHH---
Confidence            33444567779999999865544 344443   478999999988   111         23677777776632232   


Q ss_pred             ccCCCCeeEEEEcCCccchHHHHHHHHhccC
Q 026461          142 SENEGSFDYAFVDADKDNYCNYHERLMKLLK  172 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~  172 (238)
                         -...|+|+.--++......+-.+.+.+.
T Consensus        68 ---Y~~a~lIYSiRPP~El~~~il~lA~~v~   95 (127)
T PF03686_consen   68 ---YEGADLIYSIRPPPELQPPILELAKKVG   95 (127)
T ss_dssp             ---HTTEEEEEEES--TTSHHHHHHHHHHHT
T ss_pred             ---hcCCcEEEEeCCChHHhHHHHHHHHHhC
Confidence               2689999987766666666655555443

; PDB: 2K4M_A.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=92.88  E-value=0.47  Score=36.15  Aligned_cols=95  Identities=18%  Similarity=0.103  Sum_probs=58.5

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC------CCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           73 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG------VDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      +|.-||+|.++.++...-... +.+|+-...+++.++..++.-....      +..++.+ ..|..+.+          .
T Consensus         1 KI~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~----------~   68 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADN-GHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL----------E   68 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHC-TEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH----------T
T ss_pred             CEEEECcCHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh----------C
Confidence            467788877666554333222 4589999999877776665422111      1123433 33443332          4


Q ss_pred             CeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      .-|+|++--+.....++++.+.+.++++-.++.
T Consensus        69 ~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~  101 (157)
T PF01210_consen   69 DADIIIIAVPSQAHREVLEQLAPYLKKGQIIIS  101 (157)
T ss_dssp             T-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred             cccEEEecccHHHHHHHHHHHhhccCCCCEEEE
Confidence            669999988878889999999999988776664

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=92.87  E-value=0.56  Score=39.77  Aligned_cols=87  Identities=10%  Similarity=0.050  Sum_probs=54.6

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      +..++|-+|+| .|..++.+|.... ...|+++|.+++.++.+.+.    .      ++  |..+.   .      ...+
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~---~------~~g~  201 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRRRDGATGY----E------VL--DPEKD---P------RRDY  201 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhhhc----c------cc--Chhhc---c------CCCC
Confidence            45678888875 5666677777664 34577888887766655431    1      11  11111   1      3579


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      |+||-...   ....++.+.++|+++|.+++-.
T Consensus       202 Dvvid~~G---~~~~~~~~~~~l~~~G~iv~~G  231 (308)
T TIGR01202       202 RAIYDASG---DPSLIDTLVRRLAKGGEIVLAG  231 (308)
T ss_pred             CEEEECCC---CHHHHHHHHHhhhcCcEEEEEe
Confidence            98874332   2345677789999999998644

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=92.85  E-value=1.1  Score=38.33  Aligned_cols=93  Identities=14%  Similarity=0.083  Sum_probs=58.2

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           67 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        67 ~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ...+..+||-.|+| .|..+..+|+..  +.+|++++.+++..+.+++    .|...   ++.  ..+.         ..
T Consensus       162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~----~Ga~~---vi~--~~~~---------~~  221 (329)
T TIGR02822       162 SLPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALA----LGAAS---AGG--AYDT---------PP  221 (329)
T ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----hCCce---ecc--cccc---------Cc
Confidence            34456789999864 344456666665  4689999999888776665    35432   111  1110         02


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      +.+|+++.....   ...+....+.|++||.+++-..
T Consensus       222 ~~~d~~i~~~~~---~~~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       222 EPLDAAILFAPA---GGLVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             ccceEEEECCCc---HHHHHHHHHhhCCCcEEEEEec
Confidence            468876653322   2467778899999999887544

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=92.80  E-value=1.8  Score=37.15  Aligned_cols=102  Identities=16%  Similarity=0.178  Sum_probs=60.1

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ..++.+||-.|+| .|..++.++.... ..+|++++.+++..+.+++    .|...-+.....+..+.+..+.    ...
T Consensus       170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G-~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~----~~~  240 (351)
T cd08233         170 FKPGDTALVLGAGPIGLLTILALKAAG-ASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLT----GGG  240 (351)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHh----CCC
Confidence            4456788888753 3444555666543 2389999988887777654    2542222222233333333331    124


Q ss_pred             CeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      .+|+|+-...   ....++.+++.|+++|.++.-.
T Consensus       241 ~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~g  272 (351)
T cd08233         241 GVDVSFDCAG---VQATLDTAIDALRPRGTAVNVA  272 (351)
T ss_pred             CCCEEEECCC---CHHHHHHHHHhccCCCEEEEEc
Confidence            5999985432   1345677788999999887643

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=92.76  E-value=1.4  Score=39.23  Aligned_cols=88  Identities=10%  Similarity=0.027  Sum_probs=57.6

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           69 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        69 ~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ...++|+-+|+| .|......+..+  +.+|+.+|.++...+.|+.    .|.    +..  +..+   .+       ..
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e---~v-------~~  257 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAM----EGY----EVM--TMEE---AV-------KE  257 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHh----cCC----EEc--cHHH---HH-------cC
Confidence            357899999998 455556666655  4689999999988777764    243    222  1111   11       46


Q ss_pred             eeEEEEcCCccchHHHHHH-HHhccCCCeEEEEec
Q 026461          148 FDYAFVDADKDNYCNYHER-LMKLLKVGGIAVYDN  181 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~-~~~~L~~gG~lv~~~  181 (238)
                      .|+|+....   ....+.. ..+.+++||+++.-.
T Consensus       258 aDVVI~atG---~~~~i~~~~l~~mk~GgilvnvG  289 (413)
T cd00401         258 GDIFVTTTG---NKDIITGEHFEQMKDGAIVCNIG  289 (413)
T ss_pred             CCEEEECCC---CHHHHHHHHHhcCCCCcEEEEeC
Confidence            799886432   3445554 478999999987643

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=92.72  E-value=0.86  Score=39.21  Aligned_cols=98  Identities=12%  Similarity=0.027  Sum_probs=66.9

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC-Cee
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG-SFD  149 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~-~fD  149 (238)
                      ..+++|+-||.|+..+-+..+.  ---+.++|+++.+++.-+.|+..      -.++..|+.+...+-.     .. .+|
T Consensus         3 ~~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~-----~~~~~D   69 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEAL-----RKSDVD   69 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhc-----cccCCC
Confidence            4579999999999998887753  24689999999999988887632      4556667766533321     12 789


Q ss_pred             EEEEcCCccch-----------------HHHHHHHHhccCCCeEEEEeccc
Q 026461          150 YAFVDADKDNY-----------------CNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       150 ~V~~d~~~~~~-----------------~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      +++-..+++.+                 ..+++ +...++| -+++++|+-
T Consensus        70 vligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r-~I~~~~P-~~fv~ENV~  118 (328)
T COG0270          70 VLIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIR-LIEQLRP-KFFVLENVK  118 (328)
T ss_pred             EEEeCCCCcchhhcCcccCCcCccceeeHHHHH-HHHhhCC-CEEEEecCc
Confidence            99865433221                 23333 3467788 888888874

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=92.69  E-value=1.7  Score=37.10  Aligned_cols=101  Identities=18%  Similarity=0.272  Sum_probs=62.0

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           66 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      ....+..+||-.|+|. |..++.+|+..  +.+|+++..+++..+.+++    .+...-+.....+..+.+....    .
T Consensus       155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~----~  224 (337)
T cd08261         155 AGVTAGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELT----D  224 (337)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHh----C
Confidence            3445667899988763 66777788875  5789999888777766643    2432212222223223333331    1


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ...+|+++-....   ...+..+++.|+++|.++.
T Consensus       225 ~~~vd~vld~~g~---~~~~~~~~~~l~~~G~~i~  256 (337)
T cd08261         225 GEGADVVIDATGN---PASMEEAVELVAHGGRVVL  256 (337)
T ss_pred             CCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEE
Confidence            3569999865321   3456777888999998775

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>PTZ00357 methyltransferase; Provisional

Probab=92.67  E-value=0.59  Score=43.85  Aligned_cols=104  Identities=14%  Similarity=0.074  Sum_probs=68.4

Q ss_pred             EEEEEcccccHHHHHHHhh---CCCCCEEEEEeCCchhHHHHHHHHHH-cCC-------CCcEEEEecchhHHHHHHH-h
Q 026461           73 KTIEIGVFTGYSLLLTALT---IPEDGQITAIDVNRETYEIGLPIIKK-AGV-------DHKINFIESEALSVLDQLL-K  140 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~---~~~~~~v~~iD~~~~~~~~a~~~~~~-~~~-------~~~v~~~~~d~~~~l~~~~-~  140 (238)
                      .|+-+|+|-|-......++   .....+|++||-++..+.....+... ...       .++|+++..|.+++-.... .
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            5899999999876554443   33357899999998876655554322 122       3469999999988732110 0


Q ss_pred             c---ccCCCCeeEEEEc-----CCccchHHHHHHHHhccCC----CeE
Q 026461          141 Y---SENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKV----GGI  176 (238)
Q Consensus       141 ~---~~~~~~fD~V~~d-----~~~~~~~~~~~~~~~~L~~----gG~  176 (238)
                      +   +...+++|+|+.-     ++-+..++.++.+.+.||+    +|+
T Consensus       783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence            0   0012479999863     3455668888888888876    776

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=92.60  E-value=2.1  Score=36.53  Aligned_cols=100  Identities=20%  Similarity=0.247  Sum_probs=57.5

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ..+..+||-.|+| .|..+..+++... ..+|++++.++...+.+++    .|...-+.....+....+..+.    ...
T Consensus       164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~----~~~  234 (345)
T cd08286         164 VKPGDTVAIVGAGPVGLAALLTAQLYS-PSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELT----DGR  234 (345)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHh----CCC
Confidence            3455677777653 3334455666553 2678999888876665553    3543223333233323233321    135


Q ss_pred             CeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      .+|+|+- +.  .....++.+.+.|+++|.++.
T Consensus       235 ~~d~vld-~~--g~~~~~~~~~~~l~~~g~~v~  264 (345)
T cd08286         235 GVDVVIE-AV--GIPATFELCQELVAPGGHIAN  264 (345)
T ss_pred             CCCEEEE-CC--CCHHHHHHHHHhccCCcEEEE
Confidence            7998873 32  224457778899999998875

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=92.56  E-value=1.9  Score=37.47  Aligned_cols=104  Identities=17%  Similarity=0.240  Sum_probs=59.8

Q ss_pred             HhhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec--chhHHHHHHHhcc
Q 026461           66 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYS  142 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~l~~~~~~~  142 (238)
                      ....+..+||-.|+| .|..+..+|+... ..+|++++.+++..+.+++    .|...-+.....  +..+.+..+.   
T Consensus       183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~v~~~~---  254 (369)
T cd08301         183 AKVKKGSTVAIFGLGAVGLAVAEGARIRG-ASRIIGVDLNPSKFEQAKK----FGVTEFVNPKDHDKPVQEVIAEMT---  254 (369)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcccccchhHHHHHHHHh---
Confidence            344567788888864 3444556666653 3489999999888777754    354221222111  1222233331   


Q ss_pred             cCCCCeeEEEEcCCccchHHHHHHHHhccCCC-eEEEEecc
Q 026461          143 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT  182 (238)
Q Consensus       143 ~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  182 (238)
                        .+.+|+++--..   ....+....+.+++| |.+++-..
T Consensus       255 --~~~~d~vid~~G---~~~~~~~~~~~~~~~~g~~v~~g~  290 (369)
T cd08301         255 --GGGVDYSFECTG---NIDAMISAFECVHDGWGVTVLLGV  290 (369)
T ss_pred             --CCCCCEEEECCC---ChHHHHHHHHHhhcCCCEEEEECc
Confidence              247897774321   244556677888996 88876443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=92.49  E-value=2.1  Score=37.19  Aligned_cols=102  Identities=21%  Similarity=0.325  Sum_probs=59.6

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec--chhHHHHHHHhcccC
Q 026461           68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYSEN  144 (238)
Q Consensus        68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~l~~~~~~~~~  144 (238)
                      ..+..+||-+|+| .|..++.+|+... ..+|++++.+++..+.+++    .|...-+.....  +..+.+..+.     
T Consensus       182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~-----  251 (365)
T cd08277         182 VEPGSTVAVFGLGAVGLSAIMGAKIAG-ASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMT-----  251 (365)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHh-----
Confidence            4566788888874 4445566677653 3379999999888777754    354221221111  1123333331     


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCC-eEEEEecc
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT  182 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  182 (238)
                      ...+|+|+-...   ....+...++.++++ |.++.-..
T Consensus       252 ~~g~d~vid~~g---~~~~~~~~~~~l~~~~G~~v~~g~  287 (365)
T cd08277         252 GGGVDYSFECTG---NADLMNEALESTKLGWGVSVVVGV  287 (365)
T ss_pred             CCCCCEEEECCC---ChHHHHHHHHhcccCCCEEEEEcC
Confidence            257998884322   134566778889885 88776433

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=92.41  E-value=2.3  Score=33.89  Aligned_cols=80  Identities=16%  Similarity=0.184  Sum_probs=45.1

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCcEEEEec
Q 026461           70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIES  129 (238)
Q Consensus        70 ~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~  129 (238)
                      ...+|+-+|||. |......+.... -++++.+|.+.                   ..++.+.+.+...+..-+++.+..
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~G-v~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~   98 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAG-VGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE   98 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcC-CCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence            567899999973 333333332223 46899999872                   345556666666553333444443


Q ss_pred             chhH-HHHHHHhcccCCCCeeEEEEcCC
Q 026461          130 EALS-VLDQLLKYSENEGSFDYAFVDAD  156 (238)
Q Consensus       130 d~~~-~l~~~~~~~~~~~~fD~V~~d~~  156 (238)
                      .... .+..+      -..+|+|+...+
T Consensus        99 ~i~~~~~~~~------~~~~D~Vi~~~d  120 (202)
T TIGR02356        99 RVTAENLELL------INNVDLVLDCTD  120 (202)
T ss_pred             cCCHHHHHHH------HhCCCEEEECCC
Confidence            3322 22333      368999876543

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=92.13  E-value=1.9  Score=36.67  Aligned_cols=100  Identities=18%  Similarity=0.206  Sum_probs=60.4

Q ss_pred             HhhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe-cchhHHHHHHHhccc
Q 026461           66 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSE  143 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~l~~~~~~~~  143 (238)
                      ....++.+||-.|+| .|..++.++.... +.+|++++.+++..+.+++    .|...-+.... .+..+.+...     
T Consensus       158 ~~~~~g~~vlV~g~g~vG~~~~~la~~~~-g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~v~~~-----  227 (338)
T PRK09422        158 SGIKPGQWIAIYGAGGLGNLALQYAKNVF-NAKVIAVDINDDKLALAKE----VGADLTINSKRVEDVAKIIQEK-----  227 (338)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHhC-CCeEEEEeCChHHHHHHHH----cCCcEEecccccccHHHHHHHh-----
Confidence            334566788888854 4555566666532 5689999999988777753    35422111111 1112223322     


Q ss_pred             CCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                       .+.+|.++++..   ....++.+++.|+++|.++.
T Consensus       228 -~~~~d~vi~~~~---~~~~~~~~~~~l~~~G~~v~  259 (338)
T PRK09422        228 -TGGAHAAVVTAV---AKAAFNQAVDAVRAGGRVVA  259 (338)
T ss_pred             -cCCCcEEEEeCC---CHHHHHHHHHhccCCCEEEE
Confidence             246887777653   24567788899999998875

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=92.10  E-value=0.84  Score=38.84  Aligned_cols=102  Identities=12%  Similarity=0.021  Sum_probs=55.9

Q ss_pred             CEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           72 KKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        72 ~~vLeiG~G--~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      .+|+-+|+|  .|+.+..|++.   +..|+.++..++.++..++.   .|+    .+.........+.........++||
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~---G~~V~lv~r~~~~~~~i~~~---~Gl----~i~~~g~~~~~~~~~~~~~~~~~~D   72 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARA---GLPVRLILRDRQRLAAYQQA---GGL----TLVEQGQASLYAIPAETADAAEPIH   72 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhC---CCCeEEEEechHHHHHHhhc---CCe----EEeeCCcceeeccCCCCcccccccC
Confidence            468999997  34444555542   35799999976555544431   122    1110000000000000001136899


Q ss_pred             EEEEcCCccchHHHHHHHHhccCCCeEE-EEeccc
Q 026461          150 YAFVDADKDNYCNYHERLMKLLKVGGIA-VYDNTL  183 (238)
Q Consensus       150 ~V~~d~~~~~~~~~~~~~~~~L~~gG~l-v~~~~~  183 (238)
                      +||+--...+....++.+.+++.++..+ .+.|-+
T Consensus        73 ~viv~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv  107 (305)
T PRK05708         73 RLLLACKAYDAEPAVASLAHRLAPGAELLLLQNGL  107 (305)
T ss_pred             EEEEECCHHhHHHHHHHHHhhCCCCCEEEEEeCCC
Confidence            9998765555677888888899888855 445444

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=92.09  E-value=0.07  Score=38.03  Aligned_cols=40  Identities=20%  Similarity=0.494  Sum_probs=28.3

Q ss_pred             CeeEEEEcCC---------ccchHHHHHHHHhccCCCeEEEEeccccCc
Q 026461          147 SFDYAFVDAD---------KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  186 (238)
Q Consensus       147 ~fD~V~~d~~---------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (238)
                      .||+|++-..         ......+|+.+..+|+|||+++++---|..
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~s   49 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKS   49 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHH
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHH
Confidence            4899987542         344678999999999999999998655543

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=92.09  E-value=5.7  Score=35.00  Aligned_cols=101  Identities=17%  Similarity=0.236  Sum_probs=56.0

Q ss_pred             EEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHH------------HHHHcCCCCcEEEEecchhHHHHHHH
Q 026461           73 KTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLP------------IIKKAGVDHKINFIESEALSVLDQLL  139 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~------------~~~~~~~~~~v~~~~~d~~~~l~~~~  139 (238)
                      +|--+|+|  |.++-.+..+.. +..|+|+|++++.++..++            .++++....|++|-. |..+.   . 
T Consensus         2 kI~viGtG--YVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTt-d~~~a---~-   74 (414)
T COG1004           2 KITVIGTG--YVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTT-DYEEA---V-   74 (414)
T ss_pred             ceEEECCc--hHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEc-CHHHH---H-
Confidence            45667774  444332222221 4689999999998887653            222222223454443 33222   1 


Q ss_pred             hcccCCCCeeEEEEcCC-c---------cchHHHHHHHHhccCCCeEEEEeccccCc
Q 026461          140 KYSENEGSFDYAFVDAD-K---------DNYCNYHERLMKLLKVGGIAVYDNTLWGG  186 (238)
Q Consensus       140 ~~~~~~~~fD~V~~d~~-~---------~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (238)
                            ..-|++|+.-+ +         .......+.+.+.++..-++|.......|
T Consensus        75 ------~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvG  125 (414)
T COG1004          75 ------KDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVG  125 (414)
T ss_pred             ------hcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCC
Confidence                  46688888521 1         11233445555677777788887777555

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=92.07  E-value=2.9  Score=35.51  Aligned_cols=109  Identities=12%  Similarity=0.192  Sum_probs=69.4

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCC--CcEEEEecchh-H-HHHHHHhcccCCC
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEAL-S-VLDQLLKYSENEG  146 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~-~-~l~~~~~~~~~~~  146 (238)
                      ...|+.+||  |.-|...---.+.+.+|.-+|. |+.++.=++.+...+..  ...+++..|.. + +...+.+.++...
T Consensus        93 ~~qvViLga--GLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~  169 (297)
T COG3315          93 IRQVVILGA--GLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS  169 (297)
T ss_pred             ccEEEEecc--ccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence            678999999  5555544433343466777776 77888878888777643  36888999987 3 4455543221112


Q ss_pred             CeeEEEEcC-----CccchHHHHHHHHhccCCCeEEEEecc
Q 026461          147 SFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       147 ~fD~V~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      .-=+++.-+     +.+....+|+.+..++.||..++++-.
T Consensus       170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~  210 (297)
T COG3315         170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS  210 (297)
T ss_pred             CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence            222333332     345567888999888888888777643

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.99  E-value=2.3  Score=36.29  Aligned_cols=104  Identities=17%  Similarity=0.251  Sum_probs=63.9

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEE--ecchhHHHHHHHhcc
Q 026461           66 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI--ESEALSVLDQLLKYS  142 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~--~~d~~~~l~~~~~~~  142 (238)
                      +...+...+.-+|.|. |.+.+.-++... .+++++||++++..+.|++.    |..+-++-.  ...+.+.+.+..   
T Consensus       188 Akv~~GstvAVfGLG~VGLav~~Gaka~G-AsrIIgvDiN~~Kf~~ak~f----GaTe~iNp~d~~~~i~evi~EmT---  259 (375)
T KOG0022|consen  188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAG-ASRIIGVDINPDKFEKAKEF----GATEFINPKDLKKPIQEVIIEMT---  259 (375)
T ss_pred             cccCCCCEEEEEecchHHHHHHHhHHhcC-cccEEEEecCHHHHHHHHhc----CcceecChhhccccHHHHHHHHh---
Confidence            3455677888888864 333344444433 68999999999999999864    543322221  224566666653   


Q ss_pred             cCCCCeeEEEEcCCccchHHHHHHHHhccCCC-eEEEEecc
Q 026461          143 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT  182 (238)
Q Consensus       143 ~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  182 (238)
                        ++.+|+-|=-.   ...+.+..++...++| |.-++-.+
T Consensus       260 --dgGvDysfEc~---G~~~~m~~al~s~h~GwG~sv~iGv  295 (375)
T KOG0022|consen  260 --DGGVDYSFECI---GNVSTMRAALESCHKGWGKSVVIGV  295 (375)
T ss_pred             --cCCceEEEEec---CCHHHHHHHHHHhhcCCCeEEEEEe
Confidence              68999988332   2244455555556676 66555433

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=91.83  E-value=2.6  Score=36.49  Aligned_cols=79  Identities=15%  Similarity=0.127  Sum_probs=47.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCC--CCEEEEEeCCc---------------------hhHHHHHHHHHHcCCCCcEEE
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPE--DGQITAIDVNR---------------------ETYEIGLPIIKKAGVDHKINF  126 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~--~~~v~~iD~~~---------------------~~~~~a~~~~~~~~~~~~v~~  126 (238)
                      ..++||-||||.  .+..++..+..  -++++-+|.+.                     ..++.+++.+...+..-+++.
T Consensus        23 ~~~~VlIiG~Gg--lGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~  100 (338)
T PRK12475         23 REKHVLIVGAGA--LGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVP  100 (338)
T ss_pred             cCCcEEEECCCH--HHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEE
Confidence            457899999963  33333332211  36899999874                     245566677777664445666


Q ss_pred             Eecchh-HHHHHHHhcccCCCCeeEEEEcCC
Q 026461          127 IESEAL-SVLDQLLKYSENEGSFDYAFVDAD  156 (238)
Q Consensus       127 ~~~d~~-~~l~~~~~~~~~~~~fD~V~~d~~  156 (238)
                      +..+.. +.+..+      -..+|+|+...+
T Consensus       101 ~~~~~~~~~~~~~------~~~~DlVid~~D  125 (338)
T PRK12475        101 VVTDVTVEELEEL------VKEVDLIIDATD  125 (338)
T ss_pred             EeccCCHHHHHHH------hcCCCEEEEcCC
Confidence            665543 233333      367999886543

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=91.82  E-value=2.1  Score=37.12  Aligned_cols=99  Identities=19%  Similarity=0.226  Sum_probs=58.9

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ..+..+||-.|+| .|..++.+++... ..++++++.+++..+.+++    .+...-+.....+..+.+..+.     ..
T Consensus       184 ~~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~~----~g~~~~i~~~~~~~~~~v~~~~-----~~  253 (365)
T cd08278         184 PRPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAKE----LGATHVINPKEEDLVAAIREIT-----GG  253 (365)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCcEEecCCCcCHHHHHHHHh-----CC
Confidence            4456788888765 3566677777764 3479999999887766654    2432111111112223333331     35


Q ss_pred             CeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      .+|+|+-....   ...+..+++.|+++|.++.
T Consensus       254 ~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~  283 (365)
T cd08278         254 GVDYALDTTGV---PAVIEQAVDALAPRGTLAL  283 (365)
T ss_pred             CCcEEEECCCC---cHHHHHHHHHhccCCEEEE
Confidence            79988854322   2356677888999998875

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=91.67  E-value=1.1  Score=34.67  Aligned_cols=100  Identities=12%  Similarity=0.044  Sum_probs=57.8

Q ss_pred             EcccccHHHHHHHhhCCCCCEEEEEeCCc--hhHH---HHHHHHHHcCCCCcEEE-EecchhHHHHHHHhcccCCCCeeE
Q 026461           77 IGVFTGYSLLLTALTIPEDGQITAIDVNR--ETYE---IGLPIIKKAGVDHKINF-IESEALSVLDQLLKYSENEGSFDY  150 (238)
Q Consensus        77 iG~G~G~~t~~la~~~~~~~~v~~iD~~~--~~~~---~a~~~~~~~~~~~~v~~-~~~d~~~~l~~~~~~~~~~~~fD~  150 (238)
                      +|=|.=..+..|++.+....++++.-.+.  +..+   .+..++....- ..+++ ...|+.++-....   .....||.
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~-~g~~V~~~VDat~l~~~~~---~~~~~FDr   78 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRE-LGVTVLHGVDATKLHKHFR---LKNQRFDR   78 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhh-cCCccccCCCCCccccccc---ccCCcCCE
Confidence            55566667777888766455665555443  3322   23345544321 12333 3445555433221   12579999


Q ss_pred             EEEcCCccc----------------hHHHHHHHHhccCCCeEEEEe
Q 026461          151 AFVDADKDN----------------YCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       151 V~~d~~~~~----------------~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      |+.+.++..                ...+|..+.++|+++|.|.+.
T Consensus        79 IiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT  124 (166)
T PF10354_consen   79 IIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT  124 (166)
T ss_pred             EEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            998754322                256788888999999988774

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=91.41  E-value=3  Score=30.07  Aligned_cols=89  Identities=12%  Similarity=0.042  Sum_probs=56.1

Q ss_pred             HHHhhcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcc
Q 026461           64 MLLRLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS  142 (238)
Q Consensus        64 ~l~~~~~~~~vLeiG~G~G~-~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~  142 (238)
                      ..+.....++|+|+|.|.=. .+..|++.   +..|+++|+++.   .+       +  ..+++..-|..+---.+    
T Consensus         7 ~iAre~~~gkVvEVGiG~~~~VA~~L~e~---g~dv~atDI~~~---~a-------~--~g~~~v~DDitnP~~~i----   67 (129)
T COG1255           7 YIARENARGKVVEVGIGFFLDVAKRLAER---GFDVLATDINEK---TA-------P--EGLRFVVDDITNPNISI----   67 (129)
T ss_pred             HHHHHhcCCcEEEEccchHHHHHHHHHHc---CCcEEEEecccc---cC-------c--ccceEEEccCCCccHHH----
Confidence            34456677899999996432 33445543   468999999987   11       1  23788888876642222    


Q ss_pred             cCCCCeeEEEEcCCccchHHHHHHHHhccCC
Q 026461          143 ENEGSFDYAFVDADKDNYCNYHERLMKLLKV  173 (238)
Q Consensus       143 ~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~  173 (238)
                        -...|+|++--++......+-.+.+.++-
T Consensus        68 --Y~~A~lIYSiRpppEl~~~ildva~aVga   96 (129)
T COG1255          68 --YEGADLIYSIRPPPELQSAILDVAKAVGA   96 (129)
T ss_pred             --hhCccceeecCCCHHHHHHHHHHHHhhCC
Confidence              36889999876665555555555555443

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=91.29  E-value=2.1  Score=37.71  Aligned_cols=105  Identities=15%  Similarity=0.171  Sum_probs=60.8

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe-cchhHHHHHHHhcccCC
Q 026461           68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENE  145 (238)
Q Consensus        68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~l~~~~~~~~~~  145 (238)
                      .....+||-.|+| .|..++.+|+... ...|+.+|.+++..+.+++.    |.. .+.... .+..+.+..+.    ..
T Consensus       183 ~~~g~~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~~~----Ga~-~v~~~~~~~~~~~v~~~~----~~  252 (393)
T TIGR02819       183 VGPGSTVYIAGAGPVGLAAAASAQLLG-AAVVIVGDLNPARLAQARSF----GCE-TVDLSKDATLPEQIEQIL----GE  252 (393)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHc----CCe-EEecCCcccHHHHHHHHc----CC
Confidence            4456677777775 4555566777654 33466778888777777653    542 111111 12223333331    13


Q ss_pred             CCeeEEEEcCCccc-----------hHHHHHHHHhccCCCeEEEEecc
Q 026461          146 GSFDYAFVDADKDN-----------YCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       146 ~~fD~V~~d~~~~~-----------~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      ..+|+|+--.....           ....++...+++++||.+++-.+
T Consensus       253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~  300 (393)
T TIGR02819       253 PEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL  300 (393)
T ss_pred             CCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence            46898875432211           12467888899999999988554

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.21  E-value=3.4  Score=36.37  Aligned_cols=111  Identities=14%  Similarity=0.154  Sum_probs=63.7

Q ss_pred             CEEEEEcc-cccH--HHHHHHhhCCC---CCEEEEEeC-CchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           72 KKTIEIGV-FTGY--SLLLTALTIPE---DGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        72 ~~vLeiG~-G~G~--~t~~la~~~~~---~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      ..|+=+|- |.|-  +..-+|.++..   ..-++|-|. -+.+.++.++|..+.+.+-...+-..|...+..+-.+ .+.
T Consensus       102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~-~fK  180 (483)
T KOG0780|consen  102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVD-RFK  180 (483)
T ss_pred             cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHH-HHH
Confidence            34666654 2333  23335544432   234677775 4567788888887776543334444554443322111 134


Q ss_pred             CCCeeEEEEcCC--ccchHHHHHHH---HhccCCCeEEEEeccc
Q 026461          145 EGSFDYAFVDAD--KDNYCNYHERL---MKLLKVGGIAVYDNTL  183 (238)
Q Consensus       145 ~~~fD~V~~d~~--~~~~~~~~~~~---~~~L~~gG~lv~~~~~  183 (238)
                      .+.||+|++|-.  +..-..+|+++   .+.++|+-+|.+=|..
T Consensus       181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDas  224 (483)
T KOG0780|consen  181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDAS  224 (483)
T ss_pred             hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecc
Confidence            689999999942  33344555555   4789999888776554

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=91.04  E-value=1.2  Score=37.33  Aligned_cols=87  Identities=15%  Similarity=0.108  Sum_probs=51.6

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEE
Q 026461           73 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  151 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V  151 (238)
                      +|.-||+  |..+..++..+. .+.+|+++|.+++..+.+.+.    +.   +.....+.    ..       ....|+|
T Consensus         2 ~I~IIG~--G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~----~~-------~~~aDlV   61 (279)
T PRK07417          2 KIGIVGL--GLIGGSLGLDLRSLGHTVYGVSRRESTCERAIER----GL---VDEASTDL----SL-------LKDCDLV   61 (279)
T ss_pred             eEEEEee--cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC----CC---cccccCCH----hH-------hcCCCEE
Confidence            4666776  445444444432 145899999998877766542    32   11111111    11       2467899


Q ss_pred             EEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          152 FVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       152 ~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      |+..+.......++.+.+.++++. ++.+
T Consensus        62 ilavp~~~~~~~~~~l~~~l~~~~-ii~d   89 (279)
T PRK07417         62 ILALPIGLLLPPSEQLIPALPPEA-IVTD   89 (279)
T ss_pred             EEcCCHHHHHHHHHHHHHhCCCCc-EEEe
Confidence            988776666777777777777754 4443

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=90.99  E-value=1.4  Score=36.28  Aligned_cols=114  Identities=17%  Similarity=0.283  Sum_probs=62.5

Q ss_pred             HhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHH
Q 026461           56 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL  135 (238)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l  135 (238)
                      +.....+..+...+....   +..+.|.-.+. +..++++-+.+.+|+.+.-.+..++++..   ..++++.+.|+.+.+
T Consensus        44 ~~l~~yl~~v~~~n~~~~---l~~YPGSP~ia-~~llR~qDrl~l~ELHp~d~~~L~~~~~~---~~~v~v~~~DG~~~l  116 (245)
T PF04378_consen   44 PALQPYLDAVRALNPDGE---LRFYPGSPAIA-ARLLREQDRLVLFELHPQDFEALKKNFRR---DRRVRVHHRDGYEGL  116 (245)
T ss_dssp             GGGHHHHHHHHHHSSSSS-----EEE-HHHHH-HHHS-TTSEEEEE--SHHHHHHHTTS--T---TS-EEEE-S-HHHHH
T ss_pred             HHHHHHHHHHHHhccCCC---cCcCCCCHHHH-HHhCCccceEEEEecCchHHHHHHHHhcc---CCccEEEeCchhhhh
Confidence            344555555544444333   44455544332 23345578999999999999988888754   357999999999977


Q ss_pred             HHHHhcccCCCCeeEEEEcCC---ccchHHHHHHHHhccC--CCeEEEE
Q 026461          136 DQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLK--VGGIAVY  179 (238)
Q Consensus       136 ~~~~~~~~~~~~fD~V~~d~~---~~~~~~~~~~~~~~L~--~gG~lv~  179 (238)
                      ..+.   ++...--+|+||.+   +.++....+.+...++  +.|++++
T Consensus       117 ~all---PP~~rRglVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~i  162 (245)
T PF04378_consen  117 KALL---PPPERRGLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAI  162 (245)
T ss_dssp             HHH----S-TTS-EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEEE
T ss_pred             hhhC---CCCCCCeEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEE
Confidence            6664   23566779999974   4456665555554444  4676665

; PDB: 2OO3_A.

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=90.98  E-value=0.42  Score=40.64  Aligned_cols=78  Identities=19%  Similarity=0.325  Sum_probs=54.5

Q ss_pred             EEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH-HHHHHhcccCCCCeeEEE
Q 026461           75 IEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENEGSFDYAF  152 (238)
Q Consensus        75 LeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-l~~~~~~~~~~~~fD~V~  152 (238)
                      +|||+  |.+.++.+.... .+-..+++|++...+..|.+++.++++.+.+.+++.+..+. ++..... ..+..||+..
T Consensus       107 iDIgt--gasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~-~~e~~ydFcM  183 (419)
T KOG2912|consen  107 IDIGT--GASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKE-ESEIIYDFCM  183 (419)
T ss_pred             eeccC--chhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhcc-CccceeeEEe
Confidence            67776  777777776543 13468999999999999999999999999898888766542 2222111 1134577777


Q ss_pred             EcC
Q 026461          153 VDA  155 (238)
Q Consensus       153 ~d~  155 (238)
                      ++.
T Consensus       184 cNP  186 (419)
T KOG2912|consen  184 CNP  186 (419)
T ss_pred             cCC
Confidence            653

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=90.94  E-value=4.7  Score=34.99  Aligned_cols=96  Identities=20%  Similarity=0.213  Sum_probs=54.8

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           69 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        69 ~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      .+..+||-.|+| .|..++.+|+..  +.++++++.+++....+   .+..|..   .++.....+.+...      .+.
T Consensus       182 ~~g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~~---~~~~Ga~---~vi~~~~~~~~~~~------~~~  247 (360)
T PLN02586        182 EPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDEA---INRLGAD---SFLVSTDPEKMKAA------IGT  247 (360)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhhH---HHhCCCc---EEEcCCCHHHHHhh------cCC
Confidence            356678888875 455566677765  46788888876543222   1233542   22211111222222      246


Q ss_pred             eeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      +|+||-...   ....+....+.|++||.++.-.
T Consensus       248 ~D~vid~~g---~~~~~~~~~~~l~~~G~iv~vG  278 (360)
T PLN02586        248 MDYIIDTVS---AVHALGPLLGLLKVNGKLITLG  278 (360)
T ss_pred             CCEEEECCC---CHHHHHHHHHHhcCCcEEEEeC
Confidence            898883322   2345677889999999888643

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=90.83  E-value=3  Score=35.33  Aligned_cols=77  Identities=16%  Similarity=0.127  Sum_probs=45.9

Q ss_pred             EEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           73 KTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        73 ~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      +||-+||| .|...+..+...+ -++++-+|.+.                   ...+.|.+.+.+.+..-+++....+..
T Consensus         1 kVlVVGaGGlG~eilknLal~G-vg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~   79 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSG-FRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ   79 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccC
Confidence            47889985 3333333222223 47888888644                   235566667766664445666666665


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcCC
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDAD  156 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~~  156 (238)
                      +....+      -.+||+|+...+
T Consensus        80 ~~~~~f------~~~fdvVi~alD   97 (291)
T cd01488          80 DKDEEF------YRQFNIIICGLD   97 (291)
T ss_pred             chhHHH------hcCCCEEEECCC
Confidence            543344      378999987543

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=90.75  E-value=0.91  Score=37.64  Aligned_cols=74  Identities=20%  Similarity=0.289  Sum_probs=46.9

Q ss_pred             HHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHH
Q 026461           86 LLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE  165 (238)
Q Consensus        86 ~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~  165 (238)
                      ..|.+..+ ..+|+++|.+++.++.|.+.    |..+.   ...+    ...+       ..+|+|++.-+.......++
T Consensus         3 ~aL~~~g~-~~~v~g~d~~~~~~~~a~~~----g~~~~---~~~~----~~~~-------~~~DlvvlavP~~~~~~~l~   63 (258)
T PF02153_consen    3 LALRKAGP-DVEVYGYDRDPETLEAALEL----GIIDE---ASTD----IEAV-------EDADLVVLAVPVSAIEDVLE   63 (258)
T ss_dssp             HHHHHTTT-TSEEEEE-SSHHHHHHHHHT----TSSSE---EESH----HHHG-------GCCSEEEE-S-HHHHHHHHH
T ss_pred             HHHHhCCC-CeEEEEEeCCHHHHHHHHHC----CCeee---ccCC----HhHh-------cCCCEEEEcCCHHHHHHHHH
Confidence            34444433 68999999999988877643    54331   2211    1222       56799999988888889999


Q ss_pred             HHHhccCCCeEEE
Q 026461          166 RLMKLLKVGGIAV  178 (238)
Q Consensus       166 ~~~~~L~~gG~lv  178 (238)
                      .+.+.+++|++++
T Consensus        64 ~~~~~~~~~~iv~   76 (258)
T PF02153_consen   64 EIAPYLKPGAIVT   76 (258)
T ss_dssp             HHHCGS-TTSEEE
T ss_pred             HhhhhcCCCcEEE
Confidence            9988888865443

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=90.70  E-value=3.5  Score=33.76  Aligned_cols=87  Identities=15%  Similarity=0.078  Sum_probs=48.0

Q ss_pred             EEEEEcccccHHHHHHHhhC--CCCCEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCcEEEEecch
Q 026461           73 KTIEIGVFTGYSLLLTALTI--PEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIESEA  131 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~--~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (238)
                      +||-+|+|  ..+..+++.+  ..-++++.+|.+.                   ...+.+.+.+.+.+..-+++....++
T Consensus         1 kVlvvG~G--GlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i   78 (234)
T cd01484           1 KVLLVGAG--GIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKV   78 (234)
T ss_pred             CEEEECCC--HHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence            47888885  4444444332  1147888888754                   23455566666665444566666655


Q ss_pred             h---HHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHH
Q 026461          132 L---SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL  167 (238)
Q Consensus       132 ~---~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~  167 (238)
                      .   +....+      -.+||+|+...+......++..+
T Consensus        79 ~~~~~~~~~f------~~~~DvVi~a~Dn~~aR~~ln~~  111 (234)
T cd01484          79 GPEQDFNDTF------FEQFHIIVNALDNIIARRYVNGM  111 (234)
T ss_pred             ChhhhchHHH------HhCCCEEEECCCCHHHHHHHHHH
Confidence            2   222233      36899999754333334444433

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=90.65  E-value=2.8  Score=30.81  Aligned_cols=80  Identities=18%  Similarity=0.195  Sum_probs=49.0

Q ss_pred             CCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCcEEEEecc
Q 026461           71 AKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIESE  130 (238)
Q Consensus        71 ~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~d  130 (238)
                      ..+|+-+||| .|......+.... -++++-+|.+.                   ...+.+++.+.+.+..-+++.+..+
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~G-v~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~   80 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSG-VGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK   80 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHT-TSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhC-CCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence            4689999996 3443333332223 47899988643                   3466777788777655567777766


Q ss_pred             h-hHHHHHHHhcccCCCCeeEEEEcCCc
Q 026461          131 A-LSVLDQLLKYSENEGSFDYAFVDADK  157 (238)
Q Consensus       131 ~-~~~l~~~~~~~~~~~~fD~V~~d~~~  157 (238)
                      . .+....+      -..+|+|+.....
T Consensus        81 ~~~~~~~~~------~~~~d~vi~~~d~  102 (135)
T PF00899_consen   81 IDEENIEEL------LKDYDIVIDCVDS  102 (135)
T ss_dssp             CSHHHHHHH------HHTSSEEEEESSS
T ss_pred             ccccccccc------ccCCCEEEEecCC
Confidence            6 2334444      2588999875433

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=90.64  E-value=1.4  Score=37.01  Aligned_cols=90  Identities=23%  Similarity=0.149  Sum_probs=54.3

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           72 KKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .+|+-+|.  |..+-+++..+..   ...+++.|.+....+.+.+.    |+.+    -..+.  .....      ....
T Consensus         4 ~~v~IvG~--GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l----gv~d----~~~~~--~~~~~------~~~a   65 (279)
T COG0287           4 MKVGIVGL--GLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL----GVID----ELTVA--GLAEA------AAEA   65 (279)
T ss_pred             cEEEEECC--chHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc----Cccc----ccccc--hhhhh------cccC
Confidence            46777886  5555555555432   34567777777666655432    3221    11111  10111      3578


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      |+|++.-+......+++++.+.|++|. ++.|
T Consensus        66 D~VivavPi~~~~~~l~~l~~~l~~g~-iv~D   96 (279)
T COG0287          66 DLVIVAVPIEATEEVLKELAPHLKKGA-IVTD   96 (279)
T ss_pred             CEEEEeccHHHHHHHHHHhcccCCCCC-EEEe
Confidence            999999888888889999888888854 4444

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=90.57  E-value=4.2  Score=32.99  Aligned_cols=80  Identities=13%  Similarity=0.118  Sum_probs=46.4

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCcEEEEec
Q 026461           70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIES  129 (238)
Q Consensus        70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~  129 (238)
                      ...+|+-+||| .|......+.... -++++.+|.+.                   ...+.+.+.+.+.+..-+++.+..
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~   98 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE   98 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence            45789999996 3333333333333 47888886543                   345666777776664444555554


Q ss_pred             chh-HHHHHHHhcccCCCCeeEEEEcCC
Q 026461          130 EAL-SVLDQLLKYSENEGSFDYAFVDAD  156 (238)
Q Consensus       130 d~~-~~l~~~~~~~~~~~~fD~V~~d~~  156 (238)
                      ... +.+..+      ...+|+|+...+
T Consensus        99 ~i~~~~~~~~------~~~~DvVi~~~d  120 (228)
T cd00757          99 RLDAENAEEL------IAGYDLVLDCTD  120 (228)
T ss_pred             eeCHHHHHHH------HhCCCEEEEcCC
Confidence            442 222333      257999987644

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=90.52  E-value=2  Score=38.04  Aligned_cols=102  Identities=20%  Similarity=0.222  Sum_probs=60.5

Q ss_pred             cCCCEEEEEc-cc-ccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHc----CCCCcEEEEe----cchhHHHHH
Q 026461           69 VNAKKTIEIG-VF-TGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKA----GVDHKINFIE----SEALSVLDQ  137 (238)
Q Consensus        69 ~~~~~vLeiG-~G-~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~----~~~~~v~~~~----~d~~~~l~~  137 (238)
                      .+..+||-+| +| .|..++.+++.... ..+|+++|.+++.++.+++.+...    |.  ...++.    .+..+.+..
T Consensus       174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga--~~~~i~~~~~~~~~~~v~~  251 (410)
T cd08238         174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI--ELLYVNPATIDDLHATLME  251 (410)
T ss_pred             CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc--eEEEECCCccccHHHHHHH
Confidence            3456888887 33 67777777876531 247999999999999888753211    21  112222    122233333


Q ss_pred             HHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          138 LLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       138 ~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      +.    ....+|+|+....   ....+....++++++|.+++
T Consensus       252 ~t----~g~g~D~vid~~g---~~~~~~~a~~~l~~~G~~v~  286 (410)
T cd08238         252 LT----GGQGFDDVFVFVP---VPELVEEADTLLAPDGCLNF  286 (410)
T ss_pred             Hh----CCCCCCEEEEcCC---CHHHHHHHHHHhccCCeEEE
Confidence            21    1347998887542   24566777889998775543

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=90.38  E-value=4.2  Score=35.25  Aligned_cols=101  Identities=21%  Similarity=0.352  Sum_probs=58.2

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec--chhHHHHHHHhccc
Q 026461           67 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYSE  143 (238)
Q Consensus        67 ~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~l~~~~~~~~  143 (238)
                      ...+..+||-+|+| .|..+..+++... ...|++++.+++..+.+++    .|....+.....  +..+.+..+.    
T Consensus       180 ~~~~g~~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~~----  250 (365)
T cd05279         180 KVTPGSTCAVFGLGGVGLSVIMGCKAAG-ASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEMT----  250 (365)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHHh----
Confidence            34456788888764 3445555666654 3358889988887776643    354222222222  2222222221    


Q ss_pred             CCCCeeEEEEcCCccchHHHHHHHHhccC-CCeEEEEe
Q 026461          144 NEGSFDYAFVDADKDNYCNYHERLMKLLK-VGGIAVYD  180 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~-~gG~lv~~  180 (238)
                       .+.+|+|+-...   ....+...++.|+ ++|.++.-
T Consensus       251 -~~~~d~vid~~g---~~~~~~~~~~~l~~~~G~~v~~  284 (365)
T cd05279         251 -DGGVDYAFEVIG---SADTLKQALDATRLGGGTSVVV  284 (365)
T ss_pred             -CCCCcEEEECCC---CHHHHHHHHHHhccCCCEEEEE
Confidence             357999884321   2345667788899 99988864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=90.29  E-value=4.5  Score=34.82  Aligned_cols=99  Identities=17%  Similarity=0.170  Sum_probs=55.9

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh---HHHHHHHhcccCC
Q 026461           70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL---SVLDQLLKYSENE  145 (238)
Q Consensus        70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~l~~~~~~~~~~  145 (238)
                      ++.+||-.|+| .|..+..+|.... ..+|++++.+++..+.++    +.|...-+.....+..   ..+....    ..
T Consensus       177 ~g~~vlI~g~g~vG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~----~~  247 (361)
T cd08231         177 AGDTVVVQGAGPLGLYAVAAAKLAG-ARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDIT----GG  247 (361)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHh----CC
Confidence            55678888764 3444556666654 238999998877666554    3354221222111111   1222221    13


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ..+|+|+-....   ...+...++.|+++|.++.-
T Consensus       248 ~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~  279 (361)
T cd08231         248 RGADVVIEASGH---PAAVPEGLELLRRGGTYVLV  279 (361)
T ss_pred             CCCcEEEECCCC---hHHHHHHHHHhccCCEEEEE
Confidence            579988854321   34566778899999988853

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=90.23  E-value=4.1  Score=36.48  Aligned_cols=104  Identities=21%  Similarity=0.294  Sum_probs=61.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHH---cCC-----CCcEEEEecchhHHHHHHHhc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK---AGV-----DHKINFIESEALSVLDQLLKY  141 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~---~~~-----~~~v~~~~~d~~~~l~~~~~~  141 (238)
                      ++.+|--||.  |+.+..+|..+..+.+|+++|++++.++..++-..-   .++     ..++.+ ..+. +.       
T Consensus         5 ~~mkI~vIGl--GyvGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~-t~~~-~~-------   73 (425)
T PRK15182          5 DEVKIAIIGL--GYVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKF-TSEI-EK-------   73 (425)
T ss_pred             CCCeEEEECc--CcchHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeE-EeCH-HH-------
Confidence            3466777766  778877777776567899999999988876521100   000     011111 1111 11       


Q ss_pred             ccCCCCeeEEEEcCCc-------cchHHH---HHHHHhccCCCeEEEEeccccCcc
Q 026461          142 SENEGSFDYAFVDADK-------DNYCNY---HERLMKLLKVGGIAVYDNTLWGGT  187 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~~-------~~~~~~---~~~~~~~L~~gG~lv~~~~~~~g~  187 (238)
                         ...-|++|+.-+.       .+....   .+.+.+.|++|.+++......+|.
T Consensus        74 ---~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgt  126 (425)
T PRK15182         74 ---IKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGC  126 (425)
T ss_pred             ---HcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcc
Confidence               1467888875321       122222   345667889988888877776553

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=90.12  E-value=4.3  Score=34.58  Aligned_cols=97  Identities=15%  Similarity=0.123  Sum_probs=57.4

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           67 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        67 ~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ......+||-.|+| .|..+..+++..  +.+++.++.+++..+.+++    .|...-+.....+..+.+..+       
T Consensus       160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~-------  226 (333)
T cd08296         160 GAKPGDLVAVQGIGGLGHLAVQYAAKM--GFRTVAISRGSDKADLARK----LGAHHYIDTSKEDVAEALQEL-------  226 (333)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----cCCcEEecCCCccHHHHHHhc-------
Confidence            34456788888854 444555666665  4579999998887776643    353211222222222222222       


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ..+|+++-...   ....+...++.|+++|.++.
T Consensus       227 ~~~d~vi~~~g---~~~~~~~~~~~l~~~G~~v~  257 (333)
T cd08296         227 GGAKLILATAP---NAKAISALVGGLAPRGKLLI  257 (333)
T ss_pred             CCCCEEEECCC---chHHHHHHHHHcccCCEEEE
Confidence            46898884221   23466777889999998875

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=90.07  E-value=7.5  Score=32.08  Aligned_cols=117  Identities=10%  Similarity=0.080  Sum_probs=81.5

Q ss_pred             cCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           53 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      .+.......+...-+.++... |..-+|+=..+..+.+   .+-++..+|+.|+-....+++|.   -..++++..+|..
T Consensus        72 ~lpa~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR---~qDRl~l~ELHp~D~~~L~~~f~---~d~~vrv~~~DG~  144 (279)
T COG2961          72 DLPAELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLR---EQDRLVLTELHPSDAPLLRNNFA---GDRRVRVLRGDGF  144 (279)
T ss_pred             CchHHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcc---hhceeeeeecCccHHHHHHHHhC---CCcceEEEecCcH
Confidence            344566677776666655544 7777777777666665   36799999999999999999886   2467999999998


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcCCc---cchHHHHHHHHhccC--CCeEEEE
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDADK---DNYCNYHERLMKLLK--VGGIAVY  179 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~~~---~~~~~~~~~~~~~L~--~gG~lv~  179 (238)
                      ..+....   ++.+.--+|+||.+-   .+|...++.+.+.++  ++|+.++
T Consensus       145 ~~l~a~L---PP~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yai  193 (279)
T COG2961         145 LALKAHL---PPKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAI  193 (279)
T ss_pred             HHHhhhC---CCCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEE
Confidence            8765543   335678899999763   345555555554443  4566665

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=90.07  E-value=4.3  Score=35.12  Aligned_cols=99  Identities=21%  Similarity=0.259  Sum_probs=56.3

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           69 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        69 ~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      .+..+||-.|+| .|..+..+++... ...+++++.+++..+.+++    .+...-+.....+..+.+....    ....
T Consensus       186 ~~g~~VlI~g~g~vG~~~~~lak~~G-~~~vi~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~----~~~~  256 (367)
T cd08263         186 RPGETVAVIGVGGVGSSAIQLAKAFG-ASPIIAVDVRDEKLAKAKE----LGATHTVNAAKEDAVAAIREIT----GGRG  256 (367)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCceEecCCcccHHHHHHHHh----CCCC
Confidence            456677777664 5556666777654 2349999888877666543    3432111111122222222221    1357


Q ss_pred             eeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      +|+|+-....   ...+..++++|+++|.++.
T Consensus       257 ~d~vld~vg~---~~~~~~~~~~l~~~G~~v~  285 (367)
T cd08263         257 VDVVVEALGK---PETFKLALDVVRDGGRAVV  285 (367)
T ss_pred             CCEEEEeCCC---HHHHHHHHHHHhcCCEEEE
Confidence            9999843221   1356777899999998775

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=89.99  E-value=5.7  Score=33.91  Aligned_cols=100  Identities=14%  Similarity=0.178  Sum_probs=58.3

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCE-EEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch---hHHHHHHHhc
Q 026461           67 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA---LSVLDQLLKY  141 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~l~~~~~~  141 (238)
                      ...++.+||-.|+|. |..+..+|+...  .+ |+.++.+++..+.+++    .+...-+.....+.   .+.+....  
T Consensus       159 ~~~~g~~vlI~g~g~vG~~a~~lak~~G--~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~--  230 (343)
T cd05285         159 GVRPGDTVLVFGAGPIGLLTAAVAKAFG--ATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELL--  230 (343)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHh--
Confidence            345667887777654 666777787754  44 8899888877666644    24322122221121   12222221  


Q ss_pred             ccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          142 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                        ....+|+|+-....   ...+...++.|+++|.++.
T Consensus       231 --~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~  263 (343)
T cd05285         231 --GGKGPDVVIECTGA---ESCIQTAIYATRPGGTVVL  263 (343)
T ss_pred             --CCCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEE
Confidence              13569998864332   2356677889999998875

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=89.94  E-value=1.3  Score=37.82  Aligned_cols=35  Identities=6%  Similarity=0.029  Sum_probs=26.5

Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      .+.+|+||+--......+.++.+.+++++++.++.
T Consensus        70 ~~~~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~  104 (313)
T PRK06249         70 MPPCDWVLVGLKTTANALLAPLIPQVAAPDAKVLL  104 (313)
T ss_pred             cCCCCEEEEEecCCChHhHHHHHhhhcCCCCEEEE
Confidence            36899999876555567777888888888886653

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=89.94  E-value=5.9  Score=29.45  Aligned_cols=93  Identities=16%  Similarity=0.120  Sum_probs=52.6

Q ss_pred             EEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCC----C-cEEEEecchhHHHHHHHhcccCCCC
Q 026461           74 TIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVD----H-KINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        74 vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~----~-~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      |+-+|+  |..+..+|..+ ..+.+|+.+...+ .++..++    .++.    . ...+............      ...
T Consensus         1 I~I~G~--GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~   67 (151)
T PF02558_consen    1 ILIIGA--GAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKE----QGLTITGPDGDETVQPPIVISAPSAD------AGP   67 (151)
T ss_dssp             EEEEST--SHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHH----HCEEEEETTEEEEEEEEEEESSHGHH------HST
T ss_pred             CEEECc--CHHHHHHHHHHHHCCCceEEEEccc-cHHhhhh----eeEEEEecccceecccccccCcchhc------cCC
Confidence            455666  55555555544 1267899999877 5554332    2321    1 0111110000011011      489


Q ss_pred             eeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ||+||+--......+.++.+.+.+.++..+++
T Consensus        68 ~D~viv~vKa~~~~~~l~~l~~~~~~~t~iv~   99 (151)
T PF02558_consen   68 YDLVIVAVKAYQLEQALQSLKPYLDPNTTIVS   99 (151)
T ss_dssp             ESEEEE-SSGGGHHHHHHHHCTGEETTEEEEE
T ss_pred             CcEEEEEecccchHHHHHHHhhccCCCcEEEE
Confidence            99999987666778889999999999865554

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=89.83  E-value=5.2  Score=35.32  Aligned_cols=102  Identities=19%  Similarity=0.221  Sum_probs=55.2

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc---CC-----CCcEEEEe-cchhHHHHHHHhccc
Q 026461           73 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA---GV-----DHKINFIE-SEALSVLDQLLKYSE  143 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---~~-----~~~v~~~~-~d~~~~l~~~~~~~~  143 (238)
                      +|--||+  |+.+..+|..+..+.+|+++|++++.++..++.....   ++     ..+.++.. .+..+.         
T Consensus         2 kI~VIGl--GyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~---------   70 (388)
T PRK15057          2 KITISGT--GYVGLSNGLLIAQNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEA---------   70 (388)
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhh---------
Confidence            3555666  5555555544433567999999999988876522100   00     01122221 111111         


Q ss_pred             CCCCeeEEEEcCCcc-----------chHHHHHHHHhccCCCeEEEEeccccCcc
Q 026461          144 NEGSFDYAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYDNTLWGGT  187 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~-----------~~~~~~~~~~~~L~~gG~lv~~~~~~~g~  187 (238)
                       ...-|+|++.-+..           ......+.+.+ +++|.++|......+|.
T Consensus        71 -~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgt  123 (388)
T PRK15057         71 -YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGF  123 (388)
T ss_pred             -hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCch
Confidence             24568998763321           12334455555 68888888777776553

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.80  E-value=3.1  Score=37.56  Aligned_cols=132  Identities=19%  Similarity=0.182  Sum_probs=72.6

Q ss_pred             CCCEEEEEcc-cccH------HHHHHHhhCCCCCEEEEEeCCc-hhHHHHHHHHHHcC-C-CCcEEEE----ecchhHHH
Q 026461           70 NAKKTIEIGV-FTGY------SLLLTALTIPEDGQITAIDVNR-ETYEIGLPIIKKAG-V-DHKINFI----ESEALSVL  135 (238)
Q Consensus        70 ~~~~vLeiG~-G~G~------~t~~la~~~~~~~~v~~iD~~~-~~~~~a~~~~~~~~-~-~~~v~~~----~~d~~~~l  135 (238)
                      +|-.|.=+|. |.|-      .+.||.+.-- ..-+.++|.-. .++++.+-+.++.. + ..-|.++    -.|+..+.
T Consensus       377 rPYVi~fvGVNGVGKSTNLAKIayWLlqNkf-rVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~va  455 (587)
T KOG0781|consen  377 RPYVISFVGVNGVGKSTNLAKIAYWLLQNKF-RVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVA  455 (587)
T ss_pred             CCeEEEEEeecCccccchHHHHHHHHHhCCc-eEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHH
Confidence            3444555554 2343      3455655322 23456777543 46676665555431 0 1123322    11222111


Q ss_pred             HHHHhcccCCCCeeEEEEcC--Ccc---chHHHHHHHHhccCCCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHH
Q 026461          136 DQLLKYSENEGSFDYAFVDA--DKD---NYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDL  210 (238)
Q Consensus       136 ~~~~~~~~~~~~fD~V~~d~--~~~---~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  210 (238)
                      .+.-+. ...+.||+|++|-  ..+   ....-+..+.+.-+|+=+|.+..++.+..               ....+..|
T Consensus       456 k~AI~~-a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~d---------------sv~q~~~f  519 (587)
T KOG0781|consen  456 KEAIQE-ARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGND---------------SVDQLKKF  519 (587)
T ss_pred             HHHHHH-HHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcH---------------HHHHHHHH
Confidence            110000 1258999999993  233   34455566667888999999888775332               66679999


Q ss_pred             HHHhhcCC
Q 026461          211 NRSLADDP  218 (238)
Q Consensus       211 ~~~l~~~~  218 (238)
                      ++.+..++
T Consensus       520 n~al~~~~  527 (587)
T KOG0781|consen  520 NRALADHS  527 (587)
T ss_pred             HHHHhcCC
Confidence            99999987

>cd05281 TDH Threonine dehydrogenase

Probab=89.76  E-value=7.8  Score=33.05  Aligned_cols=98  Identities=20%  Similarity=0.175  Sum_probs=55.1

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           69 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        69 ~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      .++.+||-.|+| .|..+..+++... ..+|++++-+++..+.+++    .|...-+.....+.. .+..+.    ..+.
T Consensus       162 ~~g~~vlV~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~-~~~~~~----~~~~  231 (341)
T cd05281         162 VSGKSVLITGCGPIGLMAIAVAKAAG-ASLVIASDPNPYRLELAKK----MGADVVINPREEDVV-EVKSVT----DGTG  231 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----hCcceeeCcccccHH-HHHHHc----CCCC
Confidence            355677776664 2556666777653 2278888777666555543    343211111122222 222221    1357


Q ss_pred             eeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      +|+|+-...   ....+..+.+.|+++|.++.
T Consensus       232 vd~vld~~g---~~~~~~~~~~~l~~~G~~v~  260 (341)
T cd05281         232 VDVVLEMSG---NPKAIEQGLKALTPGGRVSI  260 (341)
T ss_pred             CCEEEECCC---CHHHHHHHHHHhccCCEEEE
Confidence            999986432   13445667888999998875

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=89.73  E-value=3.8  Score=35.79  Aligned_cols=102  Identities=14%  Similarity=0.113  Sum_probs=56.3

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec---chhHHHHHHHhccc
Q 026461           68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKYSE  143 (238)
Q Consensus        68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~l~~~~~~~~  143 (238)
                      .....+||-.|+| .|..++.+|.... ..+|++++.+++..+.+++    .|...-+.....   +..+.+..+.    
T Consensus       201 ~~~g~~VlV~g~g~vG~~ai~lA~~~G-~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~~----  271 (384)
T cd08265         201 FRPGAYVVVYGAGPIGLAAIALAKAAG-ASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEVT----  271 (384)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHhc----
Confidence            3455677777764 3444455666653 3379999988875555443    354221221111   2222222321    


Q ss_pred             CCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ....+|+|+ |.. ......+....+.|+++|.++.-
T Consensus       272 ~g~gvDvvl-d~~-g~~~~~~~~~~~~l~~~G~~v~~  306 (384)
T cd08265         272 KGWGADIQV-EAA-GAPPATIPQMEKSIAINGKIVYI  306 (384)
T ss_pred             CCCCCCEEE-ECC-CCcHHHHHHHHHHHHcCCEEEEE
Confidence            135699887 432 12234567778889999988753

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=89.68  E-value=4.7  Score=36.05  Aligned_cols=95  Identities=14%  Similarity=0.071  Sum_probs=59.2

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhcccCCCC
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGS  147 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~~~~~~~  147 (238)
                      .++|+-+|+  |..+..+++.+.. +..|+.+|.+++.++..++..      ..+.++.+|+.+.  +...     .-..
T Consensus       231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L~~~-----~~~~  297 (453)
T PRK09496        231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELLEEE-----GIDE  297 (453)
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHHHhc-----CCcc
Confidence            568999988  7777777776643 568999999999887766542      2367888888653  3332     2468


Q ss_pred             eeEEEEcCCccchHHHHHHHHhccCCCeEEE
Q 026461          148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAV  178 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv  178 (238)
                      +|.|++-.......-....+.+.+.+.-+++
T Consensus       298 a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii~  328 (453)
T PRK09496        298 ADAFIALTNDDEANILSSLLAKRLGAKKVIA  328 (453)
T ss_pred             CCEEEECCCCcHHHHHHHHHHHHhCCCeEEE
Confidence            8888875432222222223334555543433

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.64  E-value=9.1  Score=30.53  Aligned_cols=82  Identities=17%  Similarity=0.106  Sum_probs=48.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhc-ccCC
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKY-SENE  145 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~-~~~~  145 (238)
                      +.++||-.|++ |..+..+++.+. .+.+|++++.+++..+...+.+...   .++.++.+|..+.  +..+.+. ....
T Consensus         4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~   79 (238)
T PRK05786          4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL   79 (238)
T ss_pred             CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence            45789999974 555666665542 3568999999887666554444332   2577888876532  1111110 0012


Q ss_pred             CCeeEEEEcC
Q 026461          146 GSFDYAFVDA  155 (238)
Q Consensus       146 ~~fD~V~~d~  155 (238)
                      +.+|.++...
T Consensus        80 ~~id~ii~~a   89 (238)
T PRK05786         80 NAIDGLVVTV   89 (238)
T ss_pred             CCCCEEEEcC
Confidence            5678888764

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=89.57  E-value=2.6  Score=35.83  Aligned_cols=95  Identities=18%  Similarity=0.274  Sum_probs=56.8

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        70 ~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      +..+||-.|+|. |..+..+++... ..++++++.+++..+.+++    .+..   .++..+... +..+..   ..+.+
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~~s~~~~~~~~~----~g~~---~vi~~~~~~-~~~~~~---~~~~v  232 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAG-AAEIVATDLADAPLAVARA----MGAD---ETVNLARDP-LAAYAA---DKGDF  232 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----cCCC---EEEcCCchh-hhhhhc---cCCCc
Confidence            567888888764 566677777653 2378999988877665543    2431   222221111 112211   13469


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      |+++-....   ...++.+++.|+++|.++.
T Consensus       233 d~vld~~g~---~~~~~~~~~~L~~~G~~v~  260 (339)
T cd08232         233 DVVFEASGA---PAALASALRVVRPGGTVVQ  260 (339)
T ss_pred             cEEEECCCC---HHHHHHHHHHHhcCCEEEE
Confidence            999864321   3456777899999998875

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PLN02256 arogenate dehydrogenase

Probab=89.50  E-value=4.2  Score=34.63  Aligned_cols=93  Identities=18%  Similarity=0.086  Sum_probs=52.8

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           66 LRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      .......+|.-||+  |..+..++..+.. +.+|+++|.++. .+.+.    ..|.    .. ..+..+.+         
T Consensus        31 ~~~~~~~kI~IIG~--G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a~----~~gv----~~-~~~~~e~~---------   89 (304)
T PLN02256         31 LEKSRKLKIGIVGF--GNFGQFLAKTFVKQGHTVLATSRSDY-SDIAA----ELGV----SF-FRDPDDFC---------   89 (304)
T ss_pred             hccCCCCEEEEEee--CHHHHHHHHHHHhCCCEEEEEECccH-HHHHH----HcCC----ee-eCCHHHHh---------
Confidence            33445668999997  5555555554432 358999998863 22222    2332    22 22322221         


Q ss_pred             CCCeeEEEEcCCccchHHHHHHH-HhccCCCeEEEEe
Q 026461          145 EGSFDYAFVDADKDNYCNYHERL-MKLLKVGGIAVYD  180 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~-~~~L~~gG~lv~~  180 (238)
                      ....|+|++..+.......++.+ ...++++. +++|
T Consensus        90 ~~~aDvVilavp~~~~~~vl~~l~~~~l~~~~-iviD  125 (304)
T PLN02256         90 EEHPDVVLLCTSILSTEAVLRSLPLQRLKRST-LFVD  125 (304)
T ss_pred             hCCCCEEEEecCHHHHHHHHHhhhhhccCCCC-EEEe
Confidence            13579999877666667777776 45677765 4443

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=89.50  E-value=6.4  Score=33.51  Aligned_cols=102  Identities=20%  Similarity=0.234  Sum_probs=58.6

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           66 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      ....+..+||-.|+|. |..+..+|.... ...+++++.+++..+.++    ..+...-+...... .+.+....    .
T Consensus       155 ~~~~~~~~vlI~g~g~~g~~~~~lA~~~G-~~~v~~~~~~~~~~~~l~----~~g~~~~~~~~~~~-~~~~~~~~----~  224 (343)
T cd08236         155 AGITLGDTVVVIGAGTIGLLAIQWLKILG-AKRVIAVDIDDEKLAVAR----ELGADDTINPKEED-VEKVRELT----E  224 (343)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHH----HcCCCEEecCcccc-HHHHHHHh----C
Confidence            3344566888888754 667777777654 224899988877665553    33432112222112 22222221    1


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ...+|+++-...   ....+..++++|+++|.++.-
T Consensus       225 ~~~~d~vld~~g---~~~~~~~~~~~l~~~G~~v~~  257 (343)
T cd08236         225 GRGADLVIEAAG---SPATIEQALALARPGGKVVLV  257 (343)
T ss_pred             CCCCCEEEECCC---CHHHHHHHHHHhhcCCEEEEE
Confidence            345999985421   234566778899999987753

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=89.48  E-value=0.89  Score=36.75  Aligned_cols=62  Identities=11%  Similarity=-0.025  Sum_probs=47.1

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      .....-|.|||.|.|+.|..+.++-  ..++..+|.++.++.-.+-..+.+.  .+..+.++|++.
T Consensus        48 ~~~~~~v~eIgPgpggitR~il~a~--~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR  109 (326)
T KOG0821|consen   48 NLTNAYVYEIGPGPGGITRSILNAD--VARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLR  109 (326)
T ss_pred             ccccceeEEecCCCCchhHHHHhcc--hhheeeeeeccccChHHHHHhhcCC--cceEEeccccce
Confidence            3345679999999999999999753  4689999999988887765544333  467778888764

>PRK10083 putative oxidoreductase; Provisional

Probab=89.36  E-value=4.6  Score=34.33  Aligned_cols=99  Identities=13%  Similarity=0.018  Sum_probs=53.4

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHhh-CCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           67 RLVNAKKTIEIGVF-TGYSLLLTALT-IPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        67 ~~~~~~~vLeiG~G-~G~~t~~la~~-~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      ...+..+||-.|+| .|..++.+++. ++ ...+++++.+++..+.+++.    |...-+.....+..+.+..   .   
T Consensus       157 ~~~~g~~vlI~g~g~vG~~~~~~a~~~~G-~~~v~~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~---~---  225 (339)
T PRK10083        157 GPTEQDVALIYGAGPVGLTIVQVLKGVYN-VKAVIVADRIDERLALAKES----GADWVINNAQEPLGEALEE---K---  225 (339)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHh----CCcEEecCccccHHHHHhc---C---
Confidence            34456688888854 33344445554 23 34688899988877766543    5422122222122222211   1   


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ...+|+||--..   ....+...++.|+++|.++.
T Consensus       226 g~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~  257 (339)
T PRK10083        226 GIKPTLIIDAAC---HPSILEEAVTLASPAARIVL  257 (339)
T ss_pred             CCCCCEEEECCC---CHHHHHHHHHHhhcCCEEEE
Confidence            223455553222   13456677889999998876

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=89.16  E-value=9.5  Score=32.51  Aligned_cols=99  Identities=14%  Similarity=0.134  Sum_probs=56.1

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCE-EEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           69 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        69 ~~~~~vLeiG~G-~G~~t~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      .++.+||-.|+| .|..++.++....  .+ |++++-+++..+.+++    .+...-+.....+..+.+..+.    +..
T Consensus       160 ~~g~~vlI~~~g~vg~~a~~la~~~G--~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~----~~~  229 (340)
T TIGR00692       160 ISGKSVLVTGAGPIGLMAIAVAKASG--AYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLT----DGE  229 (340)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhc----CCC
Confidence            345667666654 4555666777653  44 8888777766655543    2432112222223333333331    135


Q ss_pred             CeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      .+|+|+-....   ...+..+++.|+++|.++.-
T Consensus       230 ~~d~vld~~g~---~~~~~~~~~~l~~~g~~v~~  260 (340)
T TIGR00692       230 GVDVFLEMSGA---PKALEQGLQAVTPGGRVSLL  260 (340)
T ss_pred             CCCEEEECCCC---HHHHHHHHHhhcCCCEEEEE
Confidence            79999864321   34566778899999987763

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=89.10  E-value=1.9  Score=35.89  Aligned_cols=65  Identities=14%  Similarity=0.104  Sum_probs=42.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC----CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIP----EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV  134 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~----~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (238)
                      .+...++|.|||.|..+.+++..++    +...++.||....... +-..+........++=+..|+.++
T Consensus        17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K-~D~~~~~~~~~~~~~R~riDI~dl   85 (259)
T PF05206_consen   17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHK-ADNKIRKDESEPKFERLRIDIKDL   85 (259)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCccccc-chhhhhccCCCCceEEEEEEeecc
Confidence            3556899999999999999999884    2578999998664432 333333332112344455566553

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=89.06  E-value=5.6  Score=31.53  Aligned_cols=79  Identities=14%  Similarity=0.122  Sum_probs=47.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC--CCCCEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCcEEEEe
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTI--PEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIE  128 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~--~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~  128 (238)
                      ...+|+-+|||.  .+..+++.+  ..-++++.+|.+.                   ...+.+.+.+++.+..-+++...
T Consensus        20 ~~s~VlIiG~gg--lG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~   97 (197)
T cd01492          20 RSARILLIGLKG--LGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDT   97 (197)
T ss_pred             HhCcEEEEcCCH--HHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence            457899999864  444444433  2147899998653                   23455666777666544555555


Q ss_pred             cchhHHHHHHHhcccCCCCeeEEEEcCC
Q 026461          129 SEALSVLDQLLKYSENEGSFDYAFVDAD  156 (238)
Q Consensus       129 ~d~~~~l~~~~~~~~~~~~fD~V~~d~~  156 (238)
                      ....+..+.+      ...||+|+....
T Consensus        98 ~~~~~~~~~~------~~~~dvVi~~~~  119 (197)
T cd01492          98 DDISEKPEEF------FSQFDVVVATEL  119 (197)
T ss_pred             cCccccHHHH------HhCCCEEEECCC
Confidence            4443333333      368999997644

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=89.06  E-value=7.1  Score=32.10  Aligned_cols=80  Identities=16%  Similarity=0.161  Sum_probs=45.7

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCcEEEEec
Q 026461           70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIES  129 (238)
Q Consensus        70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~  129 (238)
                      ...+|+-+||| .|......+.... -++++-+|.+.                   ..++.+++.+.+.+..-+++.+..
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~  109 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAG-VGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINA  109 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEec
Confidence            56789999996 3443333333333 47888888643                   234555666666554444555544


Q ss_pred             chhH-HHHHHHhcccCCCCeeEEEEcCC
Q 026461          130 EALS-VLDQLLKYSENEGSFDYAFVDAD  156 (238)
Q Consensus       130 d~~~-~l~~~~~~~~~~~~fD~V~~d~~  156 (238)
                      ...+ ..+.+      -..||+|+...+
T Consensus       110 ~i~~~~~~~~------~~~~DiVi~~~D  131 (245)
T PRK05690        110 RLDDDELAAL------IAGHDLVLDCTD  131 (245)
T ss_pred             cCCHHHHHHH------HhcCCEEEecCC
Confidence            4322 22333      368999886544

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=89.05  E-value=2.3  Score=35.86  Aligned_cols=91  Identities=11%  Similarity=0.048  Sum_probs=50.9

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEE------ecchhHHHHHHHhcccCC
Q 026461           73 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI------ESEALSVLDQLLKYSENE  145 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~------~~d~~~~l~~~~~~~~~~  145 (238)
                      +|+-||+|.-+.+  ++..+. .+..|+.++. ++.++..++    .++.  ++..      ...........      .
T Consensus         2 kI~IiG~G~iG~~--~a~~L~~~g~~V~~~~r-~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~~~~------~   66 (305)
T PRK12921          2 RIAVVGAGAVGGT--FGGRLLEAGRDVTFLVR-PKRAKALRE----RGLV--IRSDHGDAVVPGPVITDPEEL------T   66 (305)
T ss_pred             eEEEECCCHHHHH--HHHHHHHCCCceEEEec-HHHHHHHHh----CCeE--EEeCCCeEEecceeecCHHHc------c
Confidence            5788888644433  232221 1457899988 555554332    2321  1111      10011111111      3


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEE
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV  178 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv  178 (238)
                      ..+|+||+..........++.+.+.+.++.+++
T Consensus        67 ~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii   99 (305)
T PRK12921         67 GPFDLVILAVKAYQLDAAIPDLKPLVGEDTVII   99 (305)
T ss_pred             CCCCEEEEEecccCHHHHHHHHHhhcCCCCEEE
Confidence            689999998766677888888888888877665

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=88.98  E-value=0.34  Score=42.67  Aligned_cols=65  Identities=22%  Similarity=0.121  Sum_probs=56.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCc-EEEEecchhHHHH
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLD  136 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~l~  136 (238)
                      ..+..|.|+.||.|-.++..+..   ..+|++-|.+++++++.+.++..+-+.+. +++...|+.+.+.
T Consensus       248 k~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr  313 (495)
T KOG2078|consen  248 KPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR  313 (495)
T ss_pred             CCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence            35668999999999999998875   57999999999999999999988777755 9999999988774

>PRK08324 short chain dehydrogenase; Validated

Probab=88.63  E-value=7.1  Score=37.16  Aligned_cols=80  Identities=15%  Similarity=0.133  Sum_probs=48.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH------HHHHHhcc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKYS  142 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~~~~  142 (238)
                      ..++||-.|+ +|..+..++..+. .+.+|+.++.+++..+.+.+.+...   .++.++.+|..+.      +...... 
T Consensus       421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~-  495 (681)
T PRK08324        421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALA-  495 (681)
T ss_pred             CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHH-
Confidence            3467888885 3455555555442 2568999999988776665554332   3577777776431      2222111 


Q ss_pred             cCCCCeeEEEEcCC
Q 026461          143 ENEGSFDYAFVDAD  156 (238)
Q Consensus       143 ~~~~~fD~V~~d~~  156 (238)
                        .+++|+|+..+.
T Consensus       496 --~g~iDvvI~~AG  507 (681)
T PRK08324        496 --FGGVDIVVSNAG  507 (681)
T ss_pred             --cCCCCEEEECCC
Confidence              357999987754

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=88.55  E-value=3.2  Score=35.02  Aligned_cols=79  Identities=13%  Similarity=0.162  Sum_probs=49.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhcccCCC
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEG  146 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~~~~~~  146 (238)
                      +.++||-.| |+|..+.++++.+-. +.+|++++.++.............+..++++++.+|..+.  +...      -.
T Consensus         3 ~~~~ilVtG-atGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~------~~   75 (322)
T PLN02662          3 EGKVVCVTG-ASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSV------VD   75 (322)
T ss_pred             CCCEEEEEC-ChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHH------Hc
Confidence            356788888 478888888877632 4578888877654332322221122234688999988752  3333      24


Q ss_pred             CeeEEEEcC
Q 026461          147 SFDYAFVDA  155 (238)
Q Consensus       147 ~fD~V~~d~  155 (238)
                      .+|.||..+
T Consensus        76 ~~d~Vih~A   84 (322)
T PLN02662         76 GCEGVFHTA   84 (322)
T ss_pred             CCCEEEEeC
Confidence            689888764

>PRK08655 prephenate dehydrogenase; Provisional

Probab=88.54  E-value=2.7  Score=37.78  Aligned_cols=87  Identities=15%  Similarity=0.106  Sum_probs=49.4

Q ss_pred             EEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEE
Q 026461           73 KTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  151 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V  151 (238)
                      +|.-|| |.|..+.+++..+.. +.+|++++.+++.....   ....|.    .+ ..+..+.          ....|+|
T Consensus         2 kI~IIG-G~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~---a~~~gv----~~-~~~~~e~----------~~~aDvV   62 (437)
T PRK08655          2 KISIIG-GTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEV---AKELGV----EY-ANDNIDA----------AKDADIV   62 (437)
T ss_pred             EEEEEe-cCCHHHHHHHHHHHHCCCEEEEEECChHHHHHH---HHHcCC----ee-ccCHHHH----------hccCCEE
Confidence            567776 345666666655432 35799999887654222   222232    21 1122111          2456888


Q ss_pred             EEcCCccchHHHHHHHHhccCCCeEEE
Q 026461          152 FVDADKDNYCNYHERLMKLLKVGGIAV  178 (238)
Q Consensus       152 ~~d~~~~~~~~~~~~~~~~L~~gG~lv  178 (238)
                      ++..+.......++.+.+.+++|.+++
T Consensus        63 Ilavp~~~~~~vl~~l~~~l~~~~iVi   89 (437)
T PRK08655         63 IISVPINVTEDVIKEVAPHVKEGSLLM   89 (437)
T ss_pred             EEecCHHHHHHHHHHHHhhCCCCCEEE
Confidence            887666666677777777777765433

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=88.49  E-value=7.2  Score=34.35  Aligned_cols=107  Identities=12%  Similarity=0.028  Sum_probs=68.5

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCc-EEEEecchhHHHH
Q 026461           58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLD  136 (238)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~l~  136 (238)
                      .+-+|..+........||-++=..|..+.+++..-+     +.+--+--.-...++|+..+++... ++++..  .+.+ 
T Consensus        32 de~ll~~~~~~~~~~~~~i~nd~fGal~~~l~~~~~-----~~~~ds~~~~~~~~~n~~~n~~~~~~~~~~~~--~~~~-  103 (378)
T PRK15001         32 DEYLLQQLDDTEIRGPVLILNDAFGALSCALAEHKP-----YSIGDSYISELATRENLRLNGIDESSVKFLDS--TADY-  103 (378)
T ss_pred             HHHHHHHHhhcccCCCEEEEcCchhHHHHHHHhCCC-----CeeehHHHHHHHHHHHHHHcCCCcccceeecc--cccc-
Confidence            444555555433223799999999999999995432     2221112233456788888887643 555533  2222 


Q ss_pred             HHHhcccCCCCeeEEEEcCCcc--chHHHHHHHHhccCCCeEEEEe
Q 026461          137 QLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       137 ~~~~~~~~~~~fD~V~~d~~~~--~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                              .+.+|+|++--++.  .....+..+...|.+|+.|++-
T Consensus       104 --------~~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g  141 (378)
T PRK15001        104 --------PQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAG  141 (378)
T ss_pred             --------cCCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence                    46799999876543  3456677778899999997763

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.31  E-value=5.4  Score=33.49  Aligned_cols=96  Identities=17%  Similarity=0.098  Sum_probs=54.7

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc--------CCC---------CcEEEEecchhHH
Q 026461           72 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--------GVD---------HKINFIESEALSV  134 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--------~~~---------~~v~~~~~d~~~~  134 (238)
                      ++|.-||+|.=+.++..+-... +.+|+.+|.+++.++.+++.+...        .+.         .++++. .|..+.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~a   81 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAEA   81 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHHH
Confidence            5788899864443333222212 568999999999888887654321        110         123222 222211


Q ss_pred             HHHHHhcccCCCCeeEEEEcCCcc--chHHHHHHHHhccCCCeEEEE
Q 026461          135 LDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       135 l~~~~~~~~~~~~fD~V~~d~~~~--~~~~~~~~~~~~L~~gG~lv~  179 (238)
                                -..-|+|+...+..  .....++.+.+.++++.+|+.
T Consensus        82 ----------~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s  118 (287)
T PRK08293         82 ----------VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFAT  118 (287)
T ss_pred             ----------hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence                      24668888765422  345667777777777665543

>PRK08507 prephenate dehydrogenase; Validated

Probab=88.23  E-value=2.3  Score=35.46  Aligned_cols=84  Identities=20%  Similarity=0.216  Sum_probs=51.5

Q ss_pred             EEEEEcccccHHHHHHHhhCCCC---CEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           73 KTIEIGVFTGYSLLLTALTIPED---GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~~~---~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      +|.-||+  |..+..++..+...   .+|+++|.+++..+.+.+    .|...   .. .+.    .+.       ...|
T Consensus         2 ~I~iIG~--G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~----~g~~~---~~-~~~----~~~-------~~aD   60 (275)
T PRK08507          2 KIGIIGL--GLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE----LGLVD---EI-VSF----EEL-------KKCD   60 (275)
T ss_pred             EEEEEcc--CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH----CCCCc---cc-CCH----HHH-------hcCC
Confidence            4666776  55555555544322   379999999887666542    34311   11 121    122       1379


Q ss_pred             EEEEcCCccchHHHHHHHHhccCCCeEEE
Q 026461          150 YAFVDADKDNYCNYHERLMKLLKVGGIAV  178 (238)
Q Consensus       150 ~V~~d~~~~~~~~~~~~~~~~L~~gG~lv  178 (238)
                      +||+.-+.......+..+.+ ++++.+++
T Consensus        61 ~Vilavp~~~~~~~~~~l~~-l~~~~iv~   88 (275)
T PRK08507         61 VIFLAIPVDAIIEILPKLLD-IKENTTII   88 (275)
T ss_pred             EEEEeCcHHHHHHHHHHHhc-cCCCCEEE
Confidence            99998877777788888877 77766444

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=88.15  E-value=6.6  Score=33.30  Aligned_cols=92  Identities=13%  Similarity=0.126  Sum_probs=52.1

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        70 ~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .+++|+-||.|. |......+..+  +.+|+.+|.++...+.++    ..|.    ++..  . +.+.+.      -..+
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~~----~~G~----~~~~--~-~~l~~~------l~~a  211 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARIT----EMGL----SPFH--L-SELAEE------VGKI  211 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH----HcCC----eeec--H-HHHHHH------hCCC
Confidence            578999999963 33333444444  469999999977555443    2342    2221  1 222232      3689


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEEEecccc
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      |+||.-.+.   .-.-+...+.+++|++++ |-...
T Consensus       212 DiVI~t~p~---~~i~~~~l~~~~~g~vII-Dla~~  243 (296)
T PRK08306        212 DIIFNTIPA---LVLTKEVLSKMPPEALII-DLASK  243 (296)
T ss_pred             CEEEECCCh---hhhhHHHHHcCCCCcEEE-EEccC
Confidence            999985432   112345567788876544 43333

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=88.12  E-value=8.8  Score=28.39  Aligned_cols=77  Identities=17%  Similarity=0.171  Sum_probs=42.1

Q ss_pred             EEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCcEEEEecch
Q 026461           73 KTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIESEA  131 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~--~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (238)
                      +|+-+|||  ..+..++..+.  .-++++.+|.+.                   ...+.+++.+.+.+..-+++......
T Consensus         1 ~VliiG~G--glGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~   78 (143)
T cd01483           1 RVLLVGLG--GLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGI   78 (143)
T ss_pred             CEEEECCC--HHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeec
Confidence            47888985  44444343331  136889998752                   23455566666655333455454443


Q ss_pred             hHH-HHHHHhcccCCCCeeEEEEcCCc
Q 026461          132 LSV-LDQLLKYSENEGSFDYAFVDADK  157 (238)
Q Consensus       132 ~~~-l~~~~~~~~~~~~fD~V~~d~~~  157 (238)
                      ... ...+      ...+|+|+.....
T Consensus        79 ~~~~~~~~------~~~~diVi~~~d~   99 (143)
T cd01483          79 SEDNLDDF------LDGVDLVIDAIDN   99 (143)
T ss_pred             ChhhHHHH------hcCCCEEEECCCC
Confidence            322 1222      3689999876543

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=87.92  E-value=6.9  Score=32.14  Aligned_cols=95  Identities=13%  Similarity=0.131  Sum_probs=57.4

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           66 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      ....++.+||-.|+|. |..++.+|.... ..+|++++.+++..+.+++.    |..+.+  .... ...   .     .
T Consensus        93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g-~~~vi~~~~~~~~~~~~~~~----g~~~~~--~~~~-~~~---~-----~  156 (277)
T cd08255          93 AEPRLGERVAVVGLGLVGLLAAQLAKAAG-AREVVGVDPDAARRELAEAL----GPADPV--AADT-ADE---I-----G  156 (277)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEECCCHHHHHHHHHc----CCCccc--cccc-hhh---h-----c
Confidence            3445667888888764 666777777764 22499999988877765542    311111  1110 011   1     1


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ...+|+|+-....   ...+....+.|+++|.++.
T Consensus       157 ~~~~d~vl~~~~~---~~~~~~~~~~l~~~g~~~~  188 (277)
T cd08255         157 GRGADVVIEASGS---PSALETALRLLRDRGRVVL  188 (277)
T ss_pred             CCCCCEEEEccCC---hHHHHHHHHHhcCCcEEEE
Confidence            3579988854322   3356677888999998774

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=87.88  E-value=7.1  Score=33.07  Aligned_cols=95  Identities=20%  Similarity=0.101  Sum_probs=52.5

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHc-CC----------CCcEEEEecchhHHHHHH
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKA-GV----------DHKINFIESEALSVLDQL  138 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~-~~----------~~~v~~~~~d~~~~l~~~  138 (238)
                      -++|.-||+|.  .+..++..+. .+.+|+.+|.+++.++.+++.+... +.          ..++++. .|..+.    
T Consensus         4 ~~~I~vIGaG~--mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~----   76 (311)
T PRK06130          4 IQNLAIIGAGT--MGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRME-AGLAAA----   76 (311)
T ss_pred             ccEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEe-CCHHHH----
Confidence            35788898864  3333333221 1458999999999888877653221 10          0112221 122111    


Q ss_pred             HhcccCCCCeeEEEEcCCcc--chHHHHHHHHhccCCCeEEE
Q 026461          139 LKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAV  178 (238)
Q Consensus       139 ~~~~~~~~~fD~V~~d~~~~--~~~~~~~~~~~~L~~gG~lv  178 (238)
                            ....|+|+..-...  .....+..+.+.++++.+++
T Consensus        77 ------~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~  112 (311)
T PRK06130         77 ------VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFA  112 (311)
T ss_pred             ------hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEE
Confidence                  24679998875433  24567777767666655443

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=87.85  E-value=5.6  Score=34.37  Aligned_cols=101  Identities=24%  Similarity=0.327  Sum_probs=58.0

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           67 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        67 ~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ...++.+||-.|+| .|..++.++.... ..+|++++.++...+.+++    .|...-+.....+..+.+..+.    ..
T Consensus       179 ~~~~g~~vLI~g~g~vG~a~i~lak~~G-~~~Vi~~~~~~~~~~~~~~----~g~~~vv~~~~~~~~~~l~~~~----~~  249 (363)
T cd08279         179 RVRPGDTVAVIGCGGVGLNAIQGARIAG-ASRIIAVDPVPEKLELARR----FGATHTVNASEDDAVEAVRDLT----DG  249 (363)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHHH----hCCeEEeCCCCccHHHHHHHHc----CC
Confidence            34456788888764 4666677777654 2358999888877665542    3432111111112222232321    13


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ..+|+++-....   ...+..+++.|+++|.++.
T Consensus       250 ~~vd~vld~~~~---~~~~~~~~~~l~~~G~~v~  280 (363)
T cd08279         250 RGADYAFEAVGR---AATIRQALAMTRKGGTAVV  280 (363)
T ss_pred             CCCCEEEEcCCC---hHHHHHHHHHhhcCCeEEE
Confidence            569987743221   3456777889999998775

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>PRK06940 short chain dehydrogenase; Provisional

Probab=87.83  E-value=9  Score=31.74  Aligned_cols=81  Identities=19%  Similarity=0.183  Sum_probs=50.3

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhcccCCCCee
Q 026461           72 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSFD  149 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~~~~~~~fD  149 (238)
                      +.+|-.|+  |..+..+++.+..+.+|+.++.+++..+...+.+...+  .++.++.+|..+.  +..+.+.-...+.+|
T Consensus         3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id   78 (275)
T PRK06940          3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVT   78 (275)
T ss_pred             CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence            45565664  56888888887656889999998876666655554433  3577777776432  111111100136799


Q ss_pred             EEEEcCC
Q 026461          150 YAFVDAD  156 (238)
Q Consensus       150 ~V~~d~~  156 (238)
                      .++..+.
T Consensus        79 ~li~nAG   85 (275)
T PRK06940         79 GLVHTAG   85 (275)
T ss_pred             EEEECCC
Confidence            9988754

>PRK08114 cystathionine beta-lyase; Provisional

Probab=87.83  E-value=14  Score=32.77  Aligned_cols=127  Identities=10%  Similarity=0.074  Sum_probs=73.2

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      -.|....+-..++.+......+-..+|.+.....+...+.++.+|++.+. -.......++.+++.|.  ++.++.....
T Consensus        60 ~nPt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi--~v~~vd~~d~  137 (395)
T PRK08114         60 GTLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGV--TTTWFDPLIG  137 (395)
T ss_pred             CChhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCc--EEEEECCCCH
Confidence            44555666666666667778888888777777655555665778887653 33445556666777675  3666543222


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcCCccc--hHHHHHHHHhccC---CCeEEEEeccccCcc
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLK---VGGIAVYDNTLWGGT  187 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~~~~~--~~~~~~~~~~~L~---~gG~lv~~~~~~~g~  187 (238)
                      +.++...     ...-.+|++......  ....++.+.+..+   +|-.+++|++...+.
T Consensus       138 ~~l~~~l-----~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~  192 (395)
T PRK08114        138 ADIAKLI-----QPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGV  192 (395)
T ss_pred             HHHHHhc-----CCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCcccc
Confidence            3333321     234579998753211  1223344444333   356788888775443

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=87.82  E-value=6.1  Score=33.67  Aligned_cols=100  Identities=15%  Similarity=0.176  Sum_probs=56.5

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        70 ~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      ++.+||-.|+|. |..++.+++... ..+|++++.+++..+.+++    .|...-+.....+..+.+..+.    ....+
T Consensus       163 ~g~~vlV~~~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----lg~~~~~~~~~~~~~~~~~~~~----~~~~~  233 (341)
T PRK05396        163 VGEDVLITGAGPIGIMAAAVAKHVG-ARHVVITDVNEYRLELARK----MGATRAVNVAKEDLRDVMAELG----MTEGF  233 (341)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHHHhc----CCCCC
Confidence            456777777653 556677777654 2368888777766655443    3532211112222223333331    13578


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      |+||-...   ....+..+.+.|+++|.++.-.
T Consensus       234 d~v~d~~g---~~~~~~~~~~~l~~~G~~v~~g  263 (341)
T PRK05396        234 DVGLEMSG---APSAFRQMLDNMNHGGRIAMLG  263 (341)
T ss_pred             CEEEECCC---CHHHHHHHHHHHhcCCEEEEEe
Confidence            98875322   2345666778899999887743

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=87.79  E-value=9.2  Score=33.14  Aligned_cols=80  Identities=16%  Similarity=0.184  Sum_probs=45.3

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc---------------------hhHHHHHHHHHHcCCCCcEEEE
Q 026461           70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR---------------------ETYEIGLPIIKKAGVDHKINFI  127 (238)
Q Consensus        70 ~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~---------------------~~~~~a~~~~~~~~~~~~v~~~  127 (238)
                      ...+|+-+|||. |......+.... -++++.+|.+.                     ...+.+++.+.+.+-.-+++..
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aG-vg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~  101 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAG-VGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAI  101 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence            457899999962 333332222222 47899999863                     2345556666665533345555


Q ss_pred             ecchhH-HHHHHHhcccCCCCeeEEEEcCC
Q 026461          128 ESEALS-VLDQLLKYSENEGSFDYAFVDAD  156 (238)
Q Consensus       128 ~~d~~~-~l~~~~~~~~~~~~fD~V~~d~~  156 (238)
                      ..+... .+..+      -..||+|+.-..
T Consensus       102 ~~~~~~~~~~~~------~~~~DlVid~~D  125 (339)
T PRK07688        102 VQDVTAEELEEL------VTGVDLIIDATD  125 (339)
T ss_pred             eccCCHHHHHHH------HcCCCEEEEcCC
Confidence            555432 22233      267999886533

>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]

Probab=87.57  E-value=0.56  Score=37.76  Aligned_cols=102  Identities=7%  Similarity=-0.020  Sum_probs=64.6

Q ss_pred             cHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH
Q 026461           55 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV  134 (238)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (238)
                      .-...+.+..+. ..+....+|..-|.|..|..+++..+ +.++.++|.+|-+.+.|...... -+..++.-+.++..++
T Consensus        29 PVm~devl~~ls-pv~g~sf~DmTfGagGHt~~ilqk~s-e~k~yalDrDP~A~~La~~~s~e-l~~~~l~a~Lg~Fs~~  105 (303)
T KOG2782|consen   29 PVMLDEVLDILS-PVRGRSFVDMTFGAGGHTSSILQKHS-ELKNYALDRDPVARKLAHFHSDE-LMHPTLKAVLGNFSYI  105 (303)
T ss_pred             ceehhhHHHHcC-CCCCceEEEEeccCCcchHHHHHhCc-HhhhhhhccChHHHHHHHHhhHh-hcchhHHHHHhhhHHH
Confidence            334455555443 44677899999999999999999987 78899999999988888766532 1222222233333222


Q ss_pred             HHHHHhcccCCCCeeEEEEcCCccc
Q 026461          135 LDQLLKYSENEGSFDYAFVDADKDN  159 (238)
Q Consensus       135 l~~~~~~~~~~~~fD~V~~d~~~~~  159 (238)
                      ..-+.+-+-...++|=|++|-.++.
T Consensus       106 ~~l~~~~gl~~~~vDGiLmDlGcSS  130 (303)
T KOG2782|consen  106 KSLIADTGLLDVGVDGILMDLGCSS  130 (303)
T ss_pred             HHHHHHhCCCcCCcceEEeecCccc
Confidence            1111111223578999998865443

>PLN02494 adenosylhomocysteinase

Probab=87.50  E-value=4.7  Score=36.50  Aligned_cols=87  Identities=11%  Similarity=0.082  Sum_probs=53.9

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           69 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        69 ~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ...++|+-+|+| .|......+..+  +.+|+.+|.++.....+..    .|+    .+.  +..+.+          ..
T Consensus       252 LaGKtVvViGyG~IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA~~----~G~----~vv--~leEal----------~~  309 (477)
T PLN02494        252 IAGKVAVICGYGDVGKGCAAAMKAA--GARVIVTEIDPICALQALM----EGY----QVL--TLEDVV----------SE  309 (477)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhHHHHh----cCC----eec--cHHHHH----------hh
Confidence            346899999997 444555555555  4689999999876544432    132    222  222222          45


Q ss_pred             eeEEEEcCCccchHHH-HHHHHhccCCCeEEEEe
Q 026461          148 FDYAFVDADKDNYCNY-HERLMKLLKVGGIAVYD  180 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~-~~~~~~~L~~gG~lv~~  180 (238)
                      .|+|+.....   ... ....+..+++||+|+--
T Consensus       310 ADVVI~tTGt---~~vI~~e~L~~MK~GAiLiNv  340 (477)
T PLN02494        310 ADIFVTTTGN---KDIIMVDHMRKMKNNAIVCNI  340 (477)
T ss_pred             CCEEEECCCC---ccchHHHHHhcCCCCCEEEEc
Confidence            7999874322   232 35667899999998854

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=87.48  E-value=8.3  Score=29.64  Aligned_cols=93  Identities=19%  Similarity=0.202  Sum_probs=53.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHH-HHHhcccCCCCe
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD-QLLKYSENEGSF  148 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~-~~~~~~~~~~~f  148 (238)
                      ...+|+=|||=+-+..+.-  ...+..+++.+|++........+         ...+...+....++ .+      .++|
T Consensus        25 ~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF~~~~~~---------~F~fyD~~~p~~~~~~l------~~~~   87 (162)
T PF10237_consen   25 DDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRFEQFGGD---------EFVFYDYNEPEELPEEL------KGKF   87 (162)
T ss_pred             CCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchHHhcCCc---------ceEECCCCChhhhhhhc------CCCc
Confidence            4578999999544443332  12336789999999775442211         12333333333333 33      5799


Q ss_pred             eEEEEcCCccchHHH----HHHHHhccCCCeEEEEe
Q 026461          149 DYAFVDADKDNYCNY----HERLMKLLKVGGIAVYD  180 (238)
Q Consensus       149 D~V~~d~~~~~~~~~----~~~~~~~L~~gG~lv~~  180 (238)
                      |+|++|.+- ...+.    ...+.-++++++.+++.
T Consensus        88 d~vv~DPPF-l~~ec~~k~a~ti~~L~k~~~kii~~  122 (162)
T PF10237_consen   88 DVVVIDPPF-LSEECLTKTAETIRLLLKPGGKIILC  122 (162)
T ss_pred             eEEEECCCC-CCHHHHHHHHHHHHHHhCccceEEEe
Confidence            999999764 22333    34444456777777753

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PRK07109 short chain dehydrogenase; Provisional

Probab=87.46  E-value=15  Score=31.45  Aligned_cols=84  Identities=14%  Similarity=0.097  Sum_probs=51.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhc-ccCC
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKY-SENE  145 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~-~~~~  145 (238)
                      ..+.||-.|+ +|..+..+++.+. .+.+|+.++.+++.++...+.+...+  .++.++.+|..+.  +....+. ....
T Consensus         7 ~~k~vlITGa-s~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~   83 (334)
T PRK07109          7 GRQVVVITGA-SAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEEL   83 (334)
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence            4567888885 4555566655442 35789999998887777776666554  3577788886432  1211110 0013


Q ss_pred             CCeeEEEEcCC
Q 026461          146 GSFDYAFVDAD  156 (238)
Q Consensus       146 ~~fD~V~~d~~  156 (238)
                      +++|+++..+.
T Consensus        84 g~iD~lInnAg   94 (334)
T PRK07109         84 GPIDTWVNNAM   94 (334)
T ss_pred             CCCCEEEECCC
Confidence            68999987653

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=87.40  E-value=3.7  Score=35.12  Aligned_cols=94  Identities=16%  Similarity=0.113  Sum_probs=54.5

Q ss_pred             EEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHH---HH---HcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           73 KTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPI---IK---KAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~---~~---~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      +|.-||+  |..+..++..+.. +..|+.++.+++.++..++.   ..   ...+..++.+. .|..+.   .      .
T Consensus         2 kI~IiGa--Ga~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~~---~------~   69 (326)
T PRK14620          2 KISILGA--GSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDEV---L------S   69 (326)
T ss_pred             EEEEECc--CHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHHH---H------h
Confidence            4777888  4555554544322 35799999887766655542   11   00111122222 222222   1      2


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHh-ccCCCeEEE
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMK-LLKVGGIAV  178 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~-~L~~gG~lv  178 (238)
                      +..|+||+--......+.++.+.+ .++++..++
T Consensus        70 ~~~Dliiiavks~~~~~~l~~l~~~~l~~~~~vv  103 (326)
T PRK14620         70 DNATCIILAVPTQQLRTICQQLQDCHLKKNTPIL  103 (326)
T ss_pred             CCCCEEEEEeCHHHHHHHHHHHHHhcCCCCCEEE
Confidence            578999998777777888888887 888776443

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=87.23  E-value=9.6  Score=32.60  Aligned_cols=94  Identities=18%  Similarity=0.219  Sum_probs=55.7

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec---chhHHHHHHHhcccCC
Q 026461           70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKYSENE  145 (238)
Q Consensus        70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~l~~~~~~~~~~  145 (238)
                      ++.+||-.|+| .|..+..+|+... ..+|++++.+++..+.+++    .|..   .++..   +..+.+....     .
T Consensus       175 ~~~~vlI~g~g~vg~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~-----~  241 (350)
T cd08240         175 ADEPVVIIGAGGLGLMALALLKALG-PANIIVVDIDEAKLEAAKA----AGAD---VVVNGSDPDAAKRIIKAA-----G  241 (350)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCc---EEecCCCccHHHHHHHHh-----C
Confidence            45678888764 4555566777654 3378999988877766643    3542   22222   1122222221     2


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      +.+|+++-...   ....+..+++.|+++|.++.
T Consensus       242 ~~~d~vid~~g---~~~~~~~~~~~l~~~g~~v~  272 (350)
T cd08240         242 GGVDAVIDFVN---NSATASLAFDILAKGGKLVL  272 (350)
T ss_pred             CCCcEEEECCC---CHHHHHHHHHHhhcCCeEEE
Confidence            37999984322   13456777889999998875

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>TIGR00936 ahcY adenosylhomocysteinase

Probab=87.17  E-value=5.8  Score=35.25  Aligned_cols=88  Identities=11%  Similarity=0.060  Sum_probs=54.4

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           69 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        69 ~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ...++|+-+|+|. |......++.+  +.+|+.+|.++.....+..    .|.    .+.  +..+.   +       ..
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~~----~G~----~v~--~leea---l-------~~  250 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGM--GARVIVTEVDPIRALEAAM----DGF----RVM--TMEEA---A-------KI  250 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhC--cCEEEEEeCChhhHHHHHh----cCC----EeC--CHHHH---H-------hc
Confidence            3678999999973 55555555554  4789999999875444432    232    222  22222   1       35


Q ss_pred             eeEEEEcCCccchHHHHH-HHHhccCCCeEEEEec
Q 026461          148 FDYAFVDADKDNYCNYHE-RLMKLLKVGGIAVYDN  181 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~-~~~~~L~~gG~lv~~~  181 (238)
                      .|+|+....   ....+. .....+++|++++.-.
T Consensus       251 aDVVItaTG---~~~vI~~~~~~~mK~GailiN~G  282 (406)
T TIGR00936       251 GDIFITATG---NKDVIRGEHFENMKDGAIVANIG  282 (406)
T ss_pred             CCEEEECCC---CHHHHHHHHHhcCCCCcEEEEEC
Confidence            699876432   344454 3668899999888643

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=87.13  E-value=7.2  Score=34.82  Aligned_cols=92  Identities=17%  Similarity=0.129  Sum_probs=57.2

Q ss_pred             EEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhcccCCCCee
Q 026461           73 KTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSFD  149 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~~~~~~~fD  149 (238)
                      +|+-+|+  |..+..+++.+.. +..|+.+|.+++.++.+++.       ..+.++.+|+.+.  +...     ....+|
T Consensus         2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~-------~~~~~~~gd~~~~~~l~~~-----~~~~a~   67 (453)
T PRK09496          2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR-------LDVRTVVGNGSSPDVLREA-----GAEDAD   67 (453)
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh-------cCEEEEEeCCCCHHHHHHc-----CCCcCC
Confidence            5777776  8888888887642 46899999999887766542       1377888887653  3322     146789


Q ss_pred             EEEEcCCccchHHHHHHHHhccCCCeEEE
Q 026461          150 YAFVDADKDNYCNYHERLMKLLKVGGIAV  178 (238)
Q Consensus       150 ~V~~d~~~~~~~~~~~~~~~~L~~gG~lv  178 (238)
                      .|++..........+....+.+.+.-.++
T Consensus        68 ~vi~~~~~~~~n~~~~~~~r~~~~~~~ii   96 (453)
T PRK09496         68 LLIAVTDSDETNMVACQIAKSLFGAPTTI   96 (453)
T ss_pred             EEEEecCChHHHHHHHHHHHHhcCCCeEE
Confidence            88876433333333334445553433333

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=87.06  E-value=17  Score=32.63  Aligned_cols=87  Identities=11%  Similarity=0.022  Sum_probs=53.2

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      ..++|+-+|+| .|......+..+  +.+|+.+|.++.....+..    .|.    ++.  +..+.          ....
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~--Ga~ViV~d~dp~ra~~A~~----~G~----~v~--~l~ea----------l~~a  268 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGL--GARVIVTEVDPICALQAAM----DGF----RVM--TMEEA----------AELG  268 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCchhhHHHHh----cCC----Eec--CHHHH----------HhCC
Confidence            67899999997 343444445544  4689999999876544432    132    222  22222          2468


Q ss_pred             eEEEEcCCccchHHHHH-HHHhccCCCeEEEEec
Q 026461          149 DYAFVDADKDNYCNYHE-RLMKLLKVGGIAVYDN  181 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~-~~~~~L~~gG~lv~~~  181 (238)
                      |+|+....   ....+. .....+|+|++++.-.
T Consensus       269 DVVI~aTG---~~~vI~~~~~~~mK~GailiNvG  299 (425)
T PRK05476        269 DIFVTATG---NKDVITAEHMEAMKDGAILANIG  299 (425)
T ss_pred             CEEEECCC---CHHHHHHHHHhcCCCCCEEEEcC
Confidence            99876432   244554 5668899998887643

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=87.04  E-value=11  Score=33.08  Aligned_cols=33  Identities=15%  Similarity=0.120  Sum_probs=22.8

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCc
Q 026461           72 KKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNR  105 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~  105 (238)
                      ++|.-|| |.|..+.+++..+.. +..|+++|.++
T Consensus        99 ~~I~IiG-G~GlmG~slA~~l~~~G~~V~~~d~~~  132 (374)
T PRK11199         99 RPVVIVG-GKGQLGRLFAKMLTLSGYQVRILEQDD  132 (374)
T ss_pred             ceEEEEc-CCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence            5788888 346777776666542 35799999764

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=87.02  E-value=3.7  Score=35.51  Aligned_cols=100  Identities=10%  Similarity=-0.051  Sum_probs=57.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHH-HcCCC------CcEEEEecchhHHHHHHHhcc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK-KAGVD------HKINFIESEALSVLDQLLKYS  142 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~~~~------~~v~~~~~d~~~~l~~~~~~~  142 (238)
                      ...+|.-||+|.-.  ..++..+...+.++....+++.++..++.-. ...+.      .++.+ ..|..+.        
T Consensus         6 ~~mkI~IiGaGa~G--~alA~~La~~g~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~-t~d~~~a--------   74 (341)
T PRK12439          6 REPKVVVLGGGSWG--TTVASICARRGPTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRA-TTDFAEA--------   74 (341)
T ss_pred             CCCeEEEECCCHHH--HHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEE-ECCHHHH--------
Confidence            34679999996444  3334333324467777788877666654310 00111      11211 1222211        


Q ss_pred             cCCCCeeEEEEcCCccchHHHHHHHHhccCCCeE-EEEecc
Q 026461          143 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI-AVYDNT  182 (238)
Q Consensus       143 ~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~-lv~~~~  182 (238)
                        ....|+|++--+.......++.+.+.++++.. +.+.+-
T Consensus        75 --~~~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kG  113 (341)
T PRK12439         75 --ANCADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKG  113 (341)
T ss_pred             --HhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeC
Confidence              25779999987777788888999888888764 444443

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=86.94  E-value=2.2  Score=34.77  Aligned_cols=75  Identities=16%  Similarity=0.282  Sum_probs=40.4

Q ss_pred             cccHHHHH--HHhhCC-CCCEEEEEeCCchh--HHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEc
Q 026461           80 FTGYSLLL--TALTIP-EDGQITAIDVNRET--YEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD  154 (238)
Q Consensus        80 G~G~~t~~--la~~~~-~~~~v~~iD~~~~~--~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d  154 (238)
                      |.|-.|..  |+..+. .+.+|.-||-+|..  .++.+.......+++++.+...+-...+....+. .....||+|++|
T Consensus        12 GaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~-a~~~~~d~VlvD   90 (231)
T PF07015_consen   12 GAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEA-AEASGFDFVLVD   90 (231)
T ss_pred             CCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHH-HHhcCCCEEEEe
Confidence            45655544  444442 36899999988753  4443332223344556777665433333322110 013469999998


Q ss_pred             C
Q 026461          155 A  155 (238)
Q Consensus       155 ~  155 (238)
                      -
T Consensus        91 l   91 (231)
T PF07015_consen   91 L   91 (231)
T ss_pred             C
Confidence            3

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=86.90  E-value=4.2  Score=34.36  Aligned_cols=85  Identities=20%  Similarity=0.239  Sum_probs=56.2

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhc-cc
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKY-SE  143 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~-~~  143 (238)
                      ...++.||--|.|.|.- ..+|..+ ..+++++..|++++..+...+.+++.|   ++....+|..+.  +..++++ ..
T Consensus        35 ~v~g~~vLITGgg~GlG-r~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~  110 (300)
T KOG1201|consen   35 SVSGEIVLITGGGSGLG-RLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKK  110 (300)
T ss_pred             hccCCEEEEeCCCchHH-HHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHH
Confidence            34556788888887763 4444333 336789999999999998888888775   577777776531  2222211 12


Q ss_pred             CCCCeeEEEEcCC
Q 026461          144 NEGSFDYAFVDAD  156 (238)
Q Consensus       144 ~~~~fD~V~~d~~  156 (238)
                      +-+..|+++-++.
T Consensus       111 e~G~V~ILVNNAG  123 (300)
T KOG1201|consen  111 EVGDVDILVNNAG  123 (300)
T ss_pred             hcCCceEEEeccc
Confidence            3689999987753

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=86.88  E-value=15  Score=29.97  Aligned_cols=82  Identities=7%  Similarity=-0.003  Sum_probs=45.9

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH------HHHHHHhc
Q 026461           70 NAKKTIEIGVFT-GYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY  141 (238)
Q Consensus        70 ~~~~vLeiG~G~-G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~~~~~~  141 (238)
                      .++.+|-.|.++ +..+..+++.+. .+.+|+.++.+....+..++...... ..++.++.+|..+      .+....++
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~   84 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-GQESLLLPCDVTSDEEITACFETIKEE   84 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHHHHHh
Confidence            467899999763 566666666553 35688888654322222333322221 2357777777653      22222211


Q ss_pred             ccCCCCeeEEEEcC
Q 026461          142 SENEGSFDYAFVDA  155 (238)
Q Consensus       142 ~~~~~~fD~V~~d~  155 (238)
                         .+++|+++..+
T Consensus        85 ---~g~ld~lv~na   95 (257)
T PRK08594         85 ---VGVIHGVAHCI   95 (257)
T ss_pred             ---CCCccEEEECc
Confidence               47899988654

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=86.80  E-value=11  Score=30.83  Aligned_cols=89  Identities=17%  Similarity=0.124  Sum_probs=48.9

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCcEEEEec
Q 026461           70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIES  129 (238)
Q Consensus        70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~  129 (238)
                      ...+|+-+||| .|......+.... -++++.+|.+.                   ...+.+.+.+.+.+..-+++.+..
T Consensus        23 ~~~~VlvvG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~  101 (240)
T TIGR02355        23 KASRVLIVGLGGLGCAASQYLAAAG-VGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINA  101 (240)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcC-CCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence            45789999997 3444444333333 47888888643                   234555666666654444555443


Q ss_pred             chhH-HHHHHHhcccCCCCeeEEEEcCCccchHHHHH
Q 026461          130 EALS-VLDQLLKYSENEGSFDYAFVDADKDNYCNYHE  165 (238)
Q Consensus       130 d~~~-~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~  165 (238)
                      ...+ .+..+      -..+|+|+.-.+.......+.
T Consensus       102 ~i~~~~~~~~------~~~~DlVvd~~D~~~~r~~ln  132 (240)
T TIGR02355       102 KLDDAELAAL------IAEHDIVVDCTDNVEVRNQLN  132 (240)
T ss_pred             cCCHHHHHHH------hhcCCEEEEcCCCHHHHHHHH
Confidence            3322 23333      368999986544333333333

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component

Probab=86.77  E-value=5.2  Score=27.76  Aligned_cols=71  Identities=11%  Similarity=0.017  Sum_probs=43.2

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEE
Q 026461           72 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  151 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V  151 (238)
                      ++|| +-||+|.+|-.++..                   .++.+.+.|++  +++...+..+....       ...+|+|
T Consensus         4 ~~IL-l~C~~G~sSS~l~~k-------------------~~~~~~~~gi~--~~v~a~~~~~~~~~-------~~~~Dvi   54 (95)
T TIGR00853         4 TNIL-LLCAAGMSTSLLVNK-------------------MNKAAEEYGVP--VKIAAGSYGAAGEK-------LDDADVV   54 (95)
T ss_pred             cEEE-EECCCchhHHHHHHH-------------------HHHHHHHCCCc--EEEEEecHHHHHhh-------cCCCCEE
Confidence            4555 667888877666643                   24555566763  67777776665333       3679999


Q ss_pred             EEcCCccchHHHHHHHHhccCCC
Q 026461          152 FVDADKDNYCNYHERLMKLLKVG  174 (238)
Q Consensus       152 ~~d~~~~~~~~~~~~~~~~L~~g  174 (238)
                      ++...   ....++.+...+.+-
T Consensus        55 ll~pq---i~~~~~~i~~~~~~~   74 (95)
T TIGR00853        55 LLAPQ---VAYMLPDLKKETDKK   74 (95)
T ss_pred             EECch---HHHHHHHHHHHhhhc
Confidence            98753   344445555444443

Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=86.76  E-value=13  Score=32.21  Aligned_cols=96  Identities=20%  Similarity=0.248  Sum_probs=55.2

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      +..+||-.|+| .|..++.+|+..  +.++++++.+++....+.+   ..|...  .+...+. +.+...      ...+
T Consensus       180 ~g~~vlV~G~G~vG~~av~~Ak~~--G~~vi~~~~~~~~~~~~~~---~~Ga~~--~i~~~~~-~~~~~~------~~~~  245 (357)
T PLN02514        180 SGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSDKKREEALE---HLGADD--YLVSSDA-AEMQEA------ADSL  245 (357)
T ss_pred             CCCeEEEEcccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHH---hcCCcE--EecCCCh-HHHHHh------cCCC
Confidence            55678877764 455566677765  3578888877765444432   345421  1111121 222222      2468


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      |+||-...   ....+..+.+.|+++|.++.-..
T Consensus       246 D~vid~~g---~~~~~~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        246 DYIIDTVP---VFHPLEPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             cEEEECCC---chHHHHHHHHHhccCCEEEEECC
Confidence            98874332   23456667789999998886443

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=86.73  E-value=23  Score=31.72  Aligned_cols=78  Identities=14%  Similarity=0.112  Sum_probs=41.5

Q ss_pred             CCEEEEEc-ccccHHHHH--HHhhC---CCCCEEEEEeCCchh---HHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhc
Q 026461           71 AKKTIEIG-VFTGYSLLL--TALTI---PEDGQITAIDVNRET---YEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY  141 (238)
Q Consensus        71 ~~~vLeiG-~G~G~~t~~--la~~~---~~~~~v~~iD~~~~~---~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~  141 (238)
                      ++.++=+| +|.|-+|..  ||..+   ..+.+|..++.++..   .+..+.+....++.  +.. ..+..++...+.. 
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp--~~~-~~~~~~l~~~l~~-  296 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIP--VEV-VYDPKELAKALEQ-  296 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCc--eEc-cCCHHhHHHHHHH-
Confidence            34677777 678877643  33332   224578888888753   33444444444542  211 1122222222211 


Q ss_pred             ccCCCCeeEEEEcC
Q 026461          142 SENEGSFDYAFVDA  155 (238)
Q Consensus       142 ~~~~~~fD~V~~d~  155 (238)
                         ...+|+|++|.
T Consensus       297 ---~~~~DlVlIDt  307 (424)
T PRK05703        297 ---LRDCDVILIDT  307 (424)
T ss_pred             ---hCCCCEEEEeC
Confidence               25799999994

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=86.73  E-value=8.4  Score=33.81  Aligned_cols=79  Identities=14%  Similarity=0.138  Sum_probs=45.2

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCC-------------------chhHHHHHHHHHHcCCCCcEEEEec
Q 026461           70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVN-------------------RETYEIGLPIIKKAGVDHKINFIES  129 (238)
Q Consensus        70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~-------------------~~~~~~a~~~~~~~~~~~~v~~~~~  129 (238)
                      ...+|+-+||| .|......+.... -++++.+|.+                   ....+.+.+.+.+.+..-+++....
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~G-vg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~  212 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAG-VGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE  212 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence            55689999996 3443333333333 4789999987                   3456666777766553333444433


Q ss_pred             chhH-HHHHHHhcccCCCCeeEEEEcC
Q 026461          130 EALS-VLDQLLKYSENEGSFDYAFVDA  155 (238)
Q Consensus       130 d~~~-~l~~~~~~~~~~~~fD~V~~d~  155 (238)
                      ...+ .+..+      -..+|+|+...
T Consensus       213 ~~~~~~~~~~------~~~~D~Vv~~~  233 (376)
T PRK08762        213 RVTSDNVEAL------LQDVDVVVDGA  233 (376)
T ss_pred             cCChHHHHHH------HhCCCEEEECC
Confidence            3222 22222      25799888643

>COG4121 Uncharacterized conserved protein [Function unknown]

Probab=86.73  E-value=1.4  Score=36.36  Aligned_cols=106  Identities=14%  Similarity=0.112  Sum_probs=69.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCC-----------CCEEEEEeCCchhHHHHH-------------HHHHH--------
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPE-----------DGQITAIDVNRETYEIGL-------------PIIKK--------  117 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~-----------~~~v~~iD~~~~~~~~a~-------------~~~~~--------  117 (238)
                      ..-.|+|+|-|+|...+..-...+.           ..++++++.+|-......             +....        
T Consensus        58 ~~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~  137 (252)
T COG4121          58 EILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGC  137 (252)
T ss_pred             cceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchh
Confidence            4457999999999988776655431           245888888774322221             11111        


Q ss_pred             -----cCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCc--c----chHHHHHHHHhccCCCeEEEE
Q 026461          118 -----AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--D----NYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       118 -----~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~--~----~~~~~~~~~~~~L~~gG~lv~  179 (238)
                           .| .-...+..+|+.+.++.....   .+.+|..|.|+..  .    ...+++..+.+..++||.+.-
T Consensus       138 ~r~~~~g-~~~l~l~~gd~~~~~p~~~~~---~~~~dAwflDgFsP~kNP~mW~~e~l~~~a~~~~~~~~l~t  206 (252)
T COG4121         138 AAAVRHG-LLLLGLVIGDAGDGIPPVPRR---RPGTDAWFLDGFRPVKNPEMWEDELLNLMARIPYRDPTLAT  206 (252)
T ss_pred             HHhhhcc-hheeeeeeeehhhcCCccccc---ccCccEEecCCccccCChhhccHHHHHHHHhhcCCCCceec
Confidence                 11 124567889998887776211   1279999999631  1    235788888899999999875

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=86.64  E-value=9.1  Score=32.07  Aligned_cols=92  Identities=13%  Similarity=0.027  Sum_probs=52.5

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCC---CcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           73 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVD---HKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      +|+-||+|.  .+..++..+. .+.+|+.++.+++.++..++    .++.   ..... ..........       ...+
T Consensus         2 ~I~IiG~G~--~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~----~g~~~~~~~~~~-~~~~~~~~~~-------~~~~   67 (304)
T PRK06522          2 KIAILGAGA--IGGLFGAALAQAGHDVTLVARRGAHLDALNE----NGLRLEDGEITV-PVLAADDPAE-------LGPQ   67 (304)
T ss_pred             EEEEECCCH--HHHHHHHHHHhCCCeEEEEECChHHHHHHHH----cCCcccCCceee-cccCCCChhH-------cCCC
Confidence            578888853  3333333332 14589999987766655443    2321   11110 0000111111       2689


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEE
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAV  178 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv  178 (238)
                      |+|++--........++.+.+.+.++..++
T Consensus        68 d~vila~k~~~~~~~~~~l~~~l~~~~~iv   97 (304)
T PRK06522         68 DLVILAVKAYQLPAALPSLAPLLGPDTPVL   97 (304)
T ss_pred             CEEEEecccccHHHHHHHHhhhcCCCCEEE
Confidence            999998766667888888888888876554

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=86.59  E-value=3.9  Score=36.03  Aligned_cols=83  Identities=17%  Similarity=0.173  Sum_probs=56.1

Q ss_pred             EEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEE-cC----CccchHHHHHHHHhcc
Q 026461           97 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFV-DA----DKDNYCNYHERLMKLL  171 (238)
Q Consensus        97 ~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~-d~----~~~~~~~~~~~~~~~L  171 (238)
                      +++- +..|..+..-.-..-+.++ +++++.+++..+.+....     .+++|.+++ |+    ......+.++.+.+.+
T Consensus       252 ~Y~~-~~~P~YL~~e~f~~lr~~~-drv~i~t~si~~~L~~~~-----~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~  324 (380)
T PF11899_consen  252 RYTP-DCCPPYLRPENFEALRARL-DRVRIHTDSIEEVLRRLP-----PGSFDRFVLSDHMDWMDPEQLNEEWQELARTA  324 (380)
T ss_pred             CCCC-CCCChhhcHhHHHHHhcCC-CeEEEEeccHHHHHHhCC-----CCCeeEEEecchhhhCCHHHHHHHHHHHHHHh
Confidence            3443 5555544322211123455 789999999999988752     689998765 43    2345677888889999


Q ss_pred             CCCeEEEEeccccCc
Q 026461          172 KVGGIAVYDNTLWGG  186 (238)
Q Consensus       172 ~~gG~lv~~~~~~~g  186 (238)
                      +|||.++.-++....
T Consensus       325 ~pgaRV~~Rsa~~~~  339 (380)
T PF11899_consen  325 RPGARVLWRSAAVPP  339 (380)
T ss_pred             CCCCEEEEeeCCCCC
Confidence            999999997766443

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=86.55  E-value=6.5  Score=34.56  Aligned_cols=110  Identities=15%  Similarity=0.128  Sum_probs=72.9

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHH-------HHHHcCC-CCcEEEEecchhH--HHHH
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLP-------IIKKAGV-DHKINFIESEALS--VLDQ  137 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~-------~~~~~~~-~~~v~~~~~d~~~--~l~~  137 (238)
                      ..+.....|+|+|.|......+.... ...=+|+|+.....+.+..       ....+|- .+.++.++++...  ....
T Consensus       190 ~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~e  268 (419)
T KOG3924|consen  190 LGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTE  268 (419)
T ss_pred             cCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHH
Confidence            55667899999999999888887655 5667899987765544432       2233343 2457888888654  2333


Q ss_pred             HHhcccCCCCeeEEEEcCCccc--hHHHHHHHHhccCCCeEEEEecccc
Q 026461          138 LLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       138 ~~~~~~~~~~fD~V~~d~~~~~--~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      +      ...-++||++....+  ..--+++++..+++|..|+-..-+.
T Consensus       269 I------~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~~L~  311 (419)
T KOG3924|consen  269 I------QTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSKPLV  311 (419)
T ss_pred             H------hhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEecccccc
Confidence            3      367789998854322  2223346778889999888766553

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=86.52  E-value=2.5  Score=35.99  Aligned_cols=116  Identities=16%  Similarity=0.177  Sum_probs=69.1

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-------------------CCCEEEEEeCCc--hhHHHHHHHHHHc----------CC
Q 026461           72 KKTIEIGVFTGYSLLLTALTIP-------------------EDGQITAIDVNR--ETYEIGLPIIKKA----------GV  120 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~-------------------~~~~v~~iD~~~--~~~~~a~~~~~~~----------~~  120 (238)
                      .+||-||-|.|.=.+.++..+.                   +...|+.||+-+  ..++.....+...          +.
T Consensus        88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~  167 (315)
T PF11312_consen   88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW  167 (315)
T ss_pred             ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence            5999999999887777776660                   124899999954  3444444444332          01


Q ss_pred             ----C--CcEEEEecchhHHHH-HHHhcccCCCCeeEEEE--------cCCccchHHHHHHHHhccCCCeEEEEeccccC
Q 026461          121 ----D--HKINFIESEALSVLD-QLLKYSENEGSFDYAFV--------DADKDNYCNYHERLMKLLKVGGIAVYDNTLWG  185 (238)
Q Consensus       121 ----~--~~v~~~~~d~~~~l~-~~~~~~~~~~~fD~V~~--------d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  185 (238)
                          .  -+++|.+.|++..-. .+..- ......|+|-+        .........++..+-..++||.++++-|  .+
T Consensus       168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~l-l~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvD--Sp  244 (315)
T PF11312_consen  168 PLIEPDRFNVSFTQQDVLSLSEDDLKSL-LGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVD--SP  244 (315)
T ss_pred             ccCCccceeeeEEecccccCChHHHHHH-hccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEc--CC
Confidence                1  146788888876422 11000 00124566621        1224455678888889999999877754  45


Q ss_pred             ccccC
Q 026461          186 GTVAV  190 (238)
Q Consensus       186 g~~~~  190 (238)
                      |.+..
T Consensus       245 GSYS~  249 (315)
T PF11312_consen  245 GSYSE  249 (315)
T ss_pred             CCchh
Confidence            55443

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=86.49  E-value=6.4  Score=30.50  Aligned_cols=89  Identities=12%  Similarity=0.026  Sum_probs=50.3

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ....++|.-||+| .|.....+++.+  +.+|+++|.+........    ..    .+  ...+..+.++          
T Consensus        33 ~l~g~tvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~~~~~~----~~----~~--~~~~l~ell~----------   90 (178)
T PF02826_consen   33 ELRGKTVGIIGYGRIGRAVARRLKAF--GMRVIGYDRSPKPEEGAD----EF----GV--EYVSLDELLA----------   90 (178)
T ss_dssp             -STTSEEEEESTSHHHHHHHHHHHHT--T-EEEEEESSCHHHHHHH----HT----TE--EESSHHHHHH----------
T ss_pred             ccCCCEEEEEEEcCCcCeEeeeeecC--CceeEEecccCChhhhcc----cc----cc--eeeehhhhcc----------
Confidence            3467899999996 344445555555  479999999988655221    11    13  2224445544          


Q ss_pred             CeeEEEEcCCcc-chHHHH-HHHHhccCCCeEEE
Q 026461          147 SFDYAFVDADKD-NYCNYH-ERLMKLLKVGGIAV  178 (238)
Q Consensus       147 ~fD~V~~d~~~~-~~~~~~-~~~~~~L~~gG~lv  178 (238)
                      ..|+|++..+.. ....++ ...+..+|+|.++|
T Consensus        91 ~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lv  124 (178)
T PF02826_consen   91 QADIVSLHLPLTPETRGLINAEFLAKMKPGAVLV  124 (178)
T ss_dssp             H-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEE
T ss_pred             hhhhhhhhhccccccceeeeeeeeeccccceEEE
Confidence            458998875421 111221 34467888877666

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=86.37  E-value=8.6  Score=33.03  Aligned_cols=101  Identities=20%  Similarity=0.151  Sum_probs=60.7

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ..+.++|--+|.| .|..++.+|.++  +.+|++||-+...-+.+-+   ..|.+.-+.+.  +-.++.+..      .+
T Consensus       179 ~~pG~~vgI~GlGGLGh~aVq~AKAM--G~rV~vis~~~~kkeea~~---~LGAd~fv~~~--~d~d~~~~~------~~  245 (360)
T KOG0023|consen  179 LGPGKWVGIVGLGGLGHMAVQYAKAM--GMRVTVISTSSKKKEEAIK---SLGADVFVDST--EDPDIMKAI------MK  245 (360)
T ss_pred             CCCCcEEEEecCcccchHHHHHHHHh--CcEEEEEeCCchhHHHHHH---hcCcceeEEec--CCHHHHHHH------HH
Confidence            3456677666654 788999999998  4899999998765554444   34654333333  122344443      24


Q ss_pred             CeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461          147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      ..|.++-.. .......++.+..+||++|.+|+-.+
T Consensus       246 ~~dg~~~~v-~~~a~~~~~~~~~~lk~~Gt~V~vg~  280 (360)
T KOG0023|consen  246 TTDGGIDTV-SNLAEHALEPLLGLLKVNGTLVLVGL  280 (360)
T ss_pred             hhcCcceee-eeccccchHHHHHHhhcCCEEEEEeC
Confidence            455443211 10123445567788999999988543

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=86.37  E-value=2.8  Score=38.78  Aligned_cols=93  Identities=8%  Similarity=-0.024  Sum_probs=58.2

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhcccCCCCe
Q 026461           72 KKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSF  148 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~~~~~~~f  148 (238)
                      .+++-+|+  |..+..+++.+.. +..|+.+|.+++.++.+++.        ....+.+|+.+.  +.+.     +-+..
T Consensus       418 ~hiiI~G~--G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~--------g~~~i~GD~~~~~~L~~a-----~i~~a  482 (558)
T PRK10669        418 NHALLVGY--GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER--------GIRAVLGNAANEEIMQLA-----HLDCA  482 (558)
T ss_pred             CCEEEECC--ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC--------CCeEEEcCCCCHHHHHhc-----Ccccc
Confidence            45777777  7777778877642 46899999999988877642        267888998763  4433     24688


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      |.+++.-+.......+-...+...|...++.
T Consensus       483 ~~viv~~~~~~~~~~iv~~~~~~~~~~~iia  513 (558)
T PRK10669        483 RWLLLTIPNGYEAGEIVASAREKRPDIEIIA  513 (558)
T ss_pred             CEEEEEcCChHHHHHHHHHHHHHCCCCeEEE
Confidence            9777653221212222223345566666654

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=86.25  E-value=12  Score=31.60  Aligned_cols=97  Identities=12%  Similarity=0.098  Sum_probs=54.4

Q ss_pred             CCCEEEEE--cc-cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           70 NAKKTIEI--GV-FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        70 ~~~~vLei--G~-G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      .+..+|-+  |+ +.|..++.+|+..  +.+|++++.+++..+.+++    .|...-+.....+..+.+..+.    ...
T Consensus       142 ~~~~vlv~~~g~g~vG~~a~q~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~v~~~~----~~~  211 (324)
T cd08291         142 EGAKAVVHTAAASALGRMLVRLCKAD--GIKVINIVRRKEQVDLLKK----IGAEYVLNSSDPDFLEDLKELI----AKL  211 (324)
T ss_pred             CCCcEEEEccCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEECCCccHHHHHHHHh----CCC
Confidence            34455554  33 3555666677765  4689999999887777765    3542212222223323333321    134


Q ss_pred             CeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      .+|+|+-....    ......++.++++|.++.-
T Consensus       212 ~~d~vid~~g~----~~~~~~~~~l~~~G~~v~~  241 (324)
T cd08291         212 NATIFFDAVGG----GLTGQILLAMPYGSTLYVY  241 (324)
T ss_pred             CCcEEEECCCc----HHHHHHHHhhCCCCEEEEE
Confidence            79988843221    2234457888999988764

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>PRK07680 late competence protein ComER; Validated

Probab=86.21  E-value=4.9  Score=33.46  Aligned_cols=87  Identities=15%  Similarity=0.014  Sum_probs=50.8

Q ss_pred             EEEEEcccccHHHHHHHhhCCCC-----CEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           73 KTIEIGVFTGYSLLLTALTIPED-----GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~~~-----~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      +|.=||+  |..+..++..+...     ..|+.++.+++..+...+.   .   ..+... .+..+.+          ..
T Consensus         2 ~I~iIG~--G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~---~---~g~~~~-~~~~~~~----------~~   62 (273)
T PRK07680          2 NIGFIGT--GNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKER---Y---PGIHVA-KTIEEVI----------SQ   62 (273)
T ss_pred             EEEEECc--cHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHH---c---CCeEEE-CCHHHHH----------Hh
Confidence            4667887  55555555543212     3689999987665444321   1   123332 2333332          35


Q ss_pred             eeEEEEcCCccchHHHHHHHHhccCCCeEEE
Q 026461          148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAV  178 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv  178 (238)
                      .|+||+--.+....+.++.+.+.++++.+++
T Consensus        63 aDiVilav~p~~~~~vl~~l~~~l~~~~~ii   93 (273)
T PRK07680         63 SDLIFICVKPLDIYPLLQKLAPHLTDEHCLV   93 (273)
T ss_pred             CCEEEEecCHHHHHHHHHHHHhhcCCCCEEE
Confidence            6899887766666777777777787766444

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=86.10  E-value=3.6  Score=32.13  Aligned_cols=96  Identities=17%  Similarity=0.118  Sum_probs=52.9

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHH-------cC-CC--------CcEEEEecchhHHHH
Q 026461           73 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK-------AG-VD--------HKINFIESEALSVLD  136 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-------~~-~~--------~~v~~~~~d~~~~l~  136 (238)
                      +|.-||+|.=+.++...-... +.+|+.+|.+++.++.+++.+.+       .+ +.        .++++. .|..+.  
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~dl~~~--   76 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARA-GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-TDLEEA--   76 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHT-TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-SSGGGG--
T ss_pred             CEEEEcCCHHHHHHHHHHHhC-CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-cCHHHH--
Confidence            466788864332222222222 67999999999999888877664       11 11        234432 232222  


Q ss_pred             HHHhcccCCCCeeEEEEcC--CccchHHHHHHHHhccCCCeEEEEec
Q 026461          137 QLLKYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       137 ~~~~~~~~~~~fD~V~~d~--~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                               ...|+|+=..  ..+.-.+.|..+.+.++|+.+|..+.
T Consensus        77 ---------~~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnT  114 (180)
T PF02737_consen   77 ---------VDADLVIEAIPEDLELKQELFAELDEICPPDTILASNT  114 (180)
T ss_dssp             ---------CTESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--
T ss_pred             ---------hhhheehhhccccHHHHHHHHHHHHHHhCCCceEEecC
Confidence                     3778777432  12223678888888888888777653

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=86.08  E-value=9.5  Score=32.42  Aligned_cols=101  Identities=23%  Similarity=0.242  Sum_probs=60.8

Q ss_pred             hhcCCCEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           67 RLVNAKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        67 ~~~~~~~vLeiG~G--~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      ...++.+||-.|++  .|..+..+++...  .+|+++..+++..+.+++    .|...-+.....+..+.+..+.    .
T Consensus       162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~~----~  231 (341)
T cd08297         162 GLKPGDWVVISGAGGGLGHLGVQYAKAMG--LRVIAIDVGDEKLELAKE----LGADAFVDFKKSDDVEAVKELT----G  231 (341)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH----cCCcEEEcCCCccHHHHHHHHh----c
Confidence            34456788888775  6777777888764  689999988876665532    3432111221112222233321    1


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ...+|+|+-+...   ...+..+.+.++++|.++.-
T Consensus       232 ~~~vd~vl~~~~~---~~~~~~~~~~l~~~g~~v~~  264 (341)
T cd08297         232 GGGAHAVVVTAVS---AAAYEQALDYLRPGGTLVCV  264 (341)
T ss_pred             CCCCCEEEEcCCc---hHHHHHHHHHhhcCCEEEEe
Confidence            3579999864422   33456677888999988853

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=86.06  E-value=10  Score=31.83  Aligned_cols=98  Identities=17%  Similarity=0.194  Sum_probs=56.0

Q ss_pred             hcCCCEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           68 LVNAKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        68 ~~~~~~vLeiG~G--~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ..+..++|-.|.+  .|..+..++...  +.+++.++.+++..+.++.    .+....+.....+..+.+....    ..
T Consensus       164 ~~~~~~vlI~g~~~~iG~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----~~  233 (342)
T cd08266         164 LRPGETVLVHGAGSGVGSAAIQIAKLF--GATVIATAGSEDKLERAKE----LGADYVIDYRKEDFVREVRELT----GK  233 (342)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCeEEecCChHHHHHHHHHh----CC
Confidence            4456788888875  555666666654  4678999888776665533    2332112111111212222221    13


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ..+|+++-....    ..+..+++.++++|.++.
T Consensus       234 ~~~d~~i~~~g~----~~~~~~~~~l~~~G~~v~  263 (342)
T cd08266         234 RGVDVVVEHVGA----ATWEKSLKSLARGGRLVT  263 (342)
T ss_pred             CCCcEEEECCcH----HHHHHHHHHhhcCCEEEE
Confidence            579998865432    345667788899887775

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=86.03  E-value=15  Score=29.89  Aligned_cols=80  Identities=16%  Similarity=0.160  Sum_probs=44.2

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCcEEEEec
Q 026461           70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIES  129 (238)
Q Consensus        70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~  129 (238)
                      ...+|+-+||| .|......+.... -++++-+|.+.                   ...+.+.+.+...+..-+++.+..
T Consensus        10 ~~~~VlVvG~GGvGs~va~~Lar~G-Vg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~   88 (231)
T cd00755          10 RNAHVAVVGLGGVGSWAAEALARSG-VGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE   88 (231)
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeee
Confidence            45789999995 3443333332223 47899999754                   234455666666554334554443


Q ss_pred             chh-HHHHHHHhcccCCCCeeEEEEcC
Q 026461          130 EAL-SVLDQLLKYSENEGSFDYAFVDA  155 (238)
Q Consensus       130 d~~-~~l~~~~~~~~~~~~fD~V~~d~  155 (238)
                      ... +....+.     ...||+|+...
T Consensus        89 ~i~~~~~~~l~-----~~~~D~Vvdai  110 (231)
T cd00755          89 FLTPDNSEDLL-----GGDPDFVVDAI  110 (231)
T ss_pred             ecCHhHHHHHh-----cCCCCEEEEcC
Confidence            332 1222321     34699988653

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=85.99  E-value=13  Score=31.69  Aligned_cols=98  Identities=15%  Similarity=0.178  Sum_probs=57.1

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe-cchhHHHHHHHhcccCC
Q 026461           68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENE  145 (238)
Q Consensus        68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~l~~~~~~~~~~  145 (238)
                      ..+..+||-.|+| .|..+..++...  +.+|+++..+++..+.+++    .|...-+.... .+..+.+..+.     .
T Consensus       163 ~~~~~~vlV~g~g~vg~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~-----~  231 (345)
T cd08260         163 VKPGEWVAVHGCGGVGLSAVMIASAL--GARVIAVDIDDDKLELARE----LGAVATVNASEVEDVAAAVRDLT-----G  231 (345)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHH----hCCCEEEccccchhHHHHHHHHh-----C
Confidence            4456788888853 444556666654  4689999988887766643    35422122221 22222222221     2


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      +.+|+++-....   ...+....+.|+++|.++.
T Consensus       232 ~~~d~vi~~~g~---~~~~~~~~~~l~~~g~~i~  262 (345)
T cd08260         232 GGAHVSVDALGI---PETCRNSVASLRKRGRHVQ  262 (345)
T ss_pred             CCCCEEEEcCCC---HHHHHHHHHHhhcCCEEEE
Confidence            379988843221   3456677889999998775

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=85.98  E-value=15  Score=30.59  Aligned_cols=96  Identities=19%  Similarity=0.207  Sum_probs=59.6

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           68 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        68 ~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ..++.+||-.|+  +.|..++.+++..  +.+|+++..+++..+.++    ..|.. .+-....+..+.+..+      .
T Consensus       140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~----~~g~~-~~~~~~~~~~~~i~~~------~  206 (320)
T cd08243         140 LQPGDTLLIRGGTSSVGLAALKLAKAL--GATVTATTRSPERAALLK----ELGAD-EVVIDDGAIAEQLRAA------P  206 (320)
T ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----hcCCc-EEEecCccHHHHHHHh------C
Confidence            445678888885  5777778888876  467999988887665553    33542 1211122222222222      2


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      .++|+++-...    ...+..+.+.|+++|.++.-
T Consensus       207 ~~~d~vl~~~~----~~~~~~~~~~l~~~g~~v~~  237 (320)
T cd08243         207 GGFDKVLELVG----TATLKDSLRHLRPGGIVCMT  237 (320)
T ss_pred             CCceEEEECCC----hHHHHHHHHHhccCCEEEEE
Confidence            57999984322    23567778999999988753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=85.95  E-value=9.6  Score=32.08  Aligned_cols=98  Identities=15%  Similarity=0.168  Sum_probs=58.1

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           68 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        68 ~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ..+..+||-.|.  +.|..+..++...  +.++++++.++...+.+++.   .+...-+.....+..+.+....     .
T Consensus       143 ~~~~~~vlI~g~~g~ig~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~v~~~~-----~  212 (329)
T cd05288         143 PKPGETVVVSAAAGAVGSVVGQIAKLL--GARVVGIAGSDEKCRWLVEE---LGFDAAINYKTPDLAEALKEAA-----P  212 (329)
T ss_pred             CCCCCEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhh---cCCceEEecCChhHHHHHHHhc-----c
Confidence            334568888873  4677777788775  46899998888776666543   2432112221112222222221     2


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      +.+|+++-...    ...+...+++|+++|.++.
T Consensus       213 ~~~d~vi~~~g----~~~~~~~~~~l~~~G~~v~  242 (329)
T cd05288         213 DGIDVYFDNVG----GEILDAALTLLNKGGRIAL  242 (329)
T ss_pred             CCceEEEEcch----HHHHHHHHHhcCCCceEEE
Confidence            57998874322    2356777889999998774

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A

Probab=85.82  E-value=2.4  Score=28.15  Aligned_cols=37  Identities=24%  Similarity=0.356  Sum_probs=22.0

Q ss_pred             cCCCEEEEEcccccHHH-HHHHhhCCCCCEEEEEeCCc
Q 026461           69 VNAKKTIEIGVFTGYSL-LLTALTIPEDGQITAIDVNR  105 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t-~~la~~~~~~~~v~~iD~~~  105 (238)
                      ..|++||-||+.+|+-. ..++..+..++..++|-.+.
T Consensus        37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fEk   74 (78)
T PF12242_consen   37 NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFEK   74 (78)
T ss_dssp             TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE---
T ss_pred             CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeecc
Confidence            56789999999999854 34555555567777776543

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=85.72  E-value=15  Score=29.01  Aligned_cols=79  Identities=15%  Similarity=0.201  Sum_probs=44.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC--CCCCEEEEEeCCc---------------------hhHHHHHHHHHHcCCCCcEEE
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTI--PEDGQITAIDVNR---------------------ETYEIGLPIIKKAGVDHKINF  126 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~--~~~~~v~~iD~~~---------------------~~~~~a~~~~~~~~~~~~v~~  126 (238)
                      ...+|+-+|||.  .+..+++.+  ..-++++-+|.+.                     ...+.+.+.+++.+..-+++.
T Consensus        18 ~~s~VlviG~gg--lGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~   95 (198)
T cd01485          18 RSAKVLIIGAGA--LGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSI   95 (198)
T ss_pred             hhCcEEEECCCH--HHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEE
Confidence            446899999973  333333332  1146788887542                     123455666666664445555


Q ss_pred             Eecchh---HHHHHHHhcccCCCCeeEEEEcCC
Q 026461          127 IESEAL---SVLDQLLKYSENEGSFDYAFVDAD  156 (238)
Q Consensus       127 ~~~d~~---~~l~~~~~~~~~~~~fD~V~~d~~  156 (238)
                      +..+..   +..+.+      ...||+|+....
T Consensus        96 ~~~~~~~~~~~~~~~------~~~~dvVi~~~d  122 (198)
T cd01485          96 VEEDSLSNDSNIEEY------LQKFTLVIATEE  122 (198)
T ss_pred             EecccccchhhHHHH------HhCCCEEEECCC
Confidence            554442   222333      368999986543

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK07063 short chain dehydrogenase; Provisional

Probab=85.70  E-value=12  Score=30.38  Aligned_cols=83  Identities=12%  Similarity=0.083  Sum_probs=52.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH------HHHHHhcc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKYS  142 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~~~~  142 (238)
                      .++++|-.|+. |..+..+++.+. .+.+|+.++.+++..+...+.+...+...++.++.+|..+.      +....+. 
T Consensus         6 ~~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-   83 (260)
T PRK07063          6 AGKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA-   83 (260)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH-
Confidence            46788888865 555666665542 35789999998887777766665432334677888886532      2222111 


Q ss_pred             cCCCCeeEEEEcCC
Q 026461          143 ENEGSFDYAFVDAD  156 (238)
Q Consensus       143 ~~~~~fD~V~~d~~  156 (238)
                        .+.+|.++..+.
T Consensus        84 --~g~id~li~~ag   95 (260)
T PRK07063         84 --FGPLDVLVNNAG   95 (260)
T ss_pred             --hCCCcEEEECCC
Confidence              368999987653

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=85.67  E-value=14  Score=30.74  Aligned_cols=94  Identities=19%  Similarity=0.139  Sum_probs=54.4

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHH-------HHcCC-C--------CcEEEEecchhHH
Q 026461           72 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPII-------KKAGV-D--------HKINFIESEALSV  134 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~-------~~~~~-~--------~~v~~~~~d~~~~  134 (238)
                      ++|.-||+|  ..+..++..+. .+.+|+.+|++++.++.+++.+       .+.+. .        .++++. .|.   
T Consensus         4 ~kI~VIG~G--~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~~~---   77 (282)
T PRK05808          4 QKIGVIGAG--TMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-TDL---   77 (282)
T ss_pred             cEEEEEccC--HHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH---
Confidence            367788885  33333333321 1458999999999887665433       22231 1        123222 221   


Q ss_pred             HHHHHhcccCCCCeeEEEEcCCccc--hHHHHHHHHhccCCCeEEEE
Q 026461          135 LDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       135 l~~~~~~~~~~~~fD~V~~d~~~~~--~~~~~~~~~~~L~~gG~lv~  179 (238)
                       ..+       ...|+|+.......  -...+..+.+.++++.+|+.
T Consensus        78 -~~~-------~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s  116 (282)
T PRK05808         78 -DDL-------KDADLVIEAATENMDLKKKIFAQLDEIAKPEAILAT  116 (282)
T ss_pred             -HHh-------ccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEE
Confidence             122       56799998754322  25788888888898877743

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=85.58  E-value=10  Score=31.26  Aligned_cols=97  Identities=15%  Similarity=0.166  Sum_probs=58.6

Q ss_pred             HhhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecc---hhHHHHHHHh
Q 026461           66 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE---ALSVLDQLLK  140 (238)
Q Consensus        66 ~~~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~l~~~~~  140 (238)
                      ....+..+||-.|+  +.|..+..++...  +.+|++++.+++..+.+++    .|..   .++..+   ..+.+..+. 
T Consensus       132 ~~~~~g~~vlI~g~~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~-  201 (320)
T cd05286         132 YPVKPGDTVLVHAAAGGVGLLLTQWAKAL--GATVIGTVSSEEKAELARA----AGAD---HVINYRDEDFVERVREIT-  201 (320)
T ss_pred             cCCCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----CCCC---EEEeCCchhHHHHHHHHc-
Confidence            33446678998884  4666777777776  4689999888877665543    3532   222222   222222221 


Q ss_pred             cccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          141 YSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       141 ~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                         ....+|+|+-....    .....+++.|+++|.++.
T Consensus       202 ---~~~~~d~vl~~~~~----~~~~~~~~~l~~~g~~v~  233 (320)
T cd05286         202 ---GGRGVDVVYDGVGK----DTFEGSLDSLRPRGTLVS  233 (320)
T ss_pred             ---CCCCeeEEEECCCc----HhHHHHHHhhccCcEEEE
Confidence               13579999843321    345667788999998774

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=85.51  E-value=14  Score=31.36  Aligned_cols=97  Identities=19%  Similarity=0.179  Sum_probs=55.3

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecc--hhHHHHHHHhcccC
Q 026461           68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE--ALSVLDQLLKYSEN  144 (238)
Q Consensus        68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d--~~~~l~~~~~~~~~  144 (238)
                      ...+.+||-.|+| .|..+..++.... ..+|++++.+++..+.+++    .|..   .++..+  ..+.+..+.    +
T Consensus       165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g-~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~i~~~~----~  232 (340)
T cd05284         165 LDPGSTVVVIGVGGLGHIAVQILRALT-PATVIAVDRSEEALKLAER----LGAD---HVLNASDDVVEEVRELT----G  232 (340)
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHHHHhC-CCcEEEEeCCHHHHHHHHH----hCCc---EEEcCCccHHHHHHHHh----C
Confidence            3456778888754 3334445555543 2689999888876665543    3542   122211  122222321    1


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ...+|+|+-...   -...+..+++.|+++|.++.
T Consensus       233 ~~~~dvvld~~g---~~~~~~~~~~~l~~~g~~i~  264 (340)
T cd05284         233 GRGADAVIDFVG---SDETLALAAKLLAKGGRYVI  264 (340)
T ss_pred             CCCCCEEEEcCC---CHHHHHHHHHHhhcCCEEEE
Confidence            347999885332   13456777889999998875

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=85.50  E-value=8.9  Score=32.40  Aligned_cols=99  Identities=15%  Similarity=0.146  Sum_probs=58.1

Q ss_pred             HhhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHH-HHHhccc
Q 026461           66 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD-QLLKYSE  143 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~-~~~~~~~  143 (238)
                      ....+..+||-+|+| .|..++.+++... ...|+.++.+++..+.+++    .+..   .++..+..+... ...    
T Consensus       155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~----  222 (334)
T cd08234         155 LGIKPGDSVLVFGAGPIGLLLAQLLKLNG-ASRVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQKED----  222 (334)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHHHHh----
Confidence            334556789888865 3556666777653 2238889888887766643    2432   222222111111 111    


Q ss_pred             CCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ....+|+++-...   ....+....+.|+++|.++.
T Consensus       223 ~~~~vd~v~~~~~---~~~~~~~~~~~l~~~G~~v~  255 (334)
T cd08234         223 NPYGFDVVIEATG---VPKTLEQAIEYARRGGTVLV  255 (334)
T ss_pred             cCCCCcEEEECCC---ChHHHHHHHHHHhcCCEEEE
Confidence            1467999985422   23566677888999998875

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=85.46  E-value=22  Score=32.56  Aligned_cols=100  Identities=17%  Similarity=0.194  Sum_probs=63.1

Q ss_pred             CccCcHhHHHHHHHHHhhc--CCCEEEEEcccccHHHHHHHhhCC---CCCEEEEEeCCchhHHHHHHHHHHcCCC-CcE
Q 026461           51 MMGTAPDAGQLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIP---EDGQITAIDVNRETYEIGLPIIKKAGVD-HKI  124 (238)
Q Consensus        51 ~~~~~~~~~~~l~~l~~~~--~~~~vLeiG~G~G~~t~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v  124 (238)
                      ..-+.+....++..++...  +.+.+.|..||+|.........+.   ....+++-|..+.+...++.++...+.. +..
T Consensus       196 ~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~  275 (501)
T TIGR00497       196 EFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANF  275 (501)
T ss_pred             eeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCcccc
Confidence            3445566666666665432  346899999999998776544332   1256999999999999999987665543 223


Q ss_pred             EEEecchhHHHHHHHhcccCCCCeeEEEEcC
Q 026461          125 NFIESEALSVLDQLLKYSENEGSFDYAFVDA  155 (238)
Q Consensus       125 ~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~  155 (238)
                      ....+|........     ...+||.|+.+.
T Consensus       276 ~~~~~dtl~~~d~~-----~~~~~D~v~~Np  301 (501)
T TIGR00497       276 NIINADTLTTKEWE-----NENGFEVVVSNP  301 (501)
T ss_pred             CcccCCcCCCcccc-----ccccCCEEeecC
Confidence            34445543321111     135688887654

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=85.42  E-value=3.8  Score=38.36  Aligned_cols=93  Identities=10%  Similarity=0.017  Sum_probs=57.3

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH--HHHHHHhcccCCCCe
Q 026461           72 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF  148 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~l~~~~~~~~~~~~f  148 (238)
                      .+|+-+|+  |..+..+++.+. .+..++.+|.|++.++.+++.    |    ..++.||+.+  .+...     +-...
T Consensus       401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~----g----~~v~~GDat~~~~L~~a-----gi~~A  465 (601)
T PRK03659        401 PQVIIVGF--GRFGQVIGRLLMANKMRITVLERDISAVNLMRKY----G----YKVYYGDATQLELLRAA-----GAEKA  465 (601)
T ss_pred             CCEEEecC--chHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC----C----CeEEEeeCCCHHHHHhc-----CCccC
Confidence            45776666  677777766553 246899999999998887652    3    5678888875  34443     24578


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      |.+++--+........-...+.+.|...+++
T Consensus       466 ~~vv~~~~d~~~n~~i~~~~r~~~p~~~Iia  496 (601)
T PRK03659        466 EAIVITCNEPEDTMKIVELCQQHFPHLHILA  496 (601)
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHHCCCCeEEE
Confidence            8887654322222222223355666666554

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=85.25  E-value=5.8  Score=33.67  Aligned_cols=93  Identities=14%  Similarity=0.084  Sum_probs=53.8

Q ss_pred             EEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHc----C--CCCcEEEEecchhHHHHHHHhcccCC
Q 026461           73 KTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKA----G--VDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~----~--~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      +|.-||+  |..+..++..+.. +..|+.++.+++.++..++.....    +  ....+... .+..+.          .
T Consensus         3 kI~iiG~--G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------~   69 (325)
T PRK00094          3 KIAVLGA--GSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRAT-TDLAEA----------L   69 (325)
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEe-CCHHHH----------H
Confidence            5777887  5555555554422 457999999988776655431000    0  00012221 122111          2


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEE
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV  178 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv  178 (238)
                      ...|+||+.-........++.+.+.++++.+++
T Consensus        70 ~~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi  102 (325)
T PRK00094         70 ADADLILVAVPSQALREVLKQLKPLLPPDAPIV  102 (325)
T ss_pred             hCCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEE
Confidence            467999988665566777777777888876554

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=85.14  E-value=21  Score=29.84  Aligned_cols=80  Identities=15%  Similarity=0.208  Sum_probs=42.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCC--CCEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCcEEEEe
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPE--DGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIE  128 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~--~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~  128 (238)
                      ...+|+-+|||  ..+.+.++.+..  -++++-+|.+.                   ..++.+.+.+...+..-+++.+.
T Consensus        29 ~~s~VlVvG~G--GVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~  106 (268)
T PRK15116         29 ADAHICVVGIG--GVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVD  106 (268)
T ss_pred             cCCCEEEECcC--HHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEe
Confidence            56789999996  333333333311  37899999763                   12334555665555433444443


Q ss_pred             cchh-HHHHHHHhcccCCCCeeEEEEcCC
Q 026461          129 SEAL-SVLDQLLKYSENEGSFDYAFVDAD  156 (238)
Q Consensus       129 ~d~~-~~l~~~~~~~~~~~~fD~V~~d~~  156 (238)
                      .... +....+.     ...||+|+...+
T Consensus       107 ~~i~~e~~~~ll-----~~~~D~VIdaiD  130 (268)
T PRK15116        107 DFITPDNVAEYM-----SAGFSYVIDAID  130 (268)
T ss_pred             cccChhhHHHHh-----cCCCCEEEEcCC
Confidence            2111 1222221     257999876543

>PRK06172 short chain dehydrogenase; Provisional

Probab=85.12  E-value=13  Score=30.10  Aligned_cols=80  Identities=24%  Similarity=0.314  Sum_probs=51.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH------HHHHHhcc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKYS  142 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~~~~  142 (238)
                      .++++|-.|+ +|..+..++..+. .+.+|+.++.+++..+...+.+...+  .++.++.+|..+.      +...... 
T Consensus         6 ~~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~-   81 (253)
T PRK06172          6 SGKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAA-   81 (253)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH-
Confidence            4578888886 4555666655543 24689999999887776666665544  4588888887532      2222111 


Q ss_pred             cCCCCeeEEEEcC
Q 026461          143 ENEGSFDYAFVDA  155 (238)
Q Consensus       143 ~~~~~fD~V~~d~  155 (238)
                        .+++|.|+..+
T Consensus        82 --~g~id~li~~a   92 (253)
T PRK06172         82 --YGRLDYAFNNA   92 (253)
T ss_pred             --hCCCCEEEECC
Confidence              36789998764

>PRK05854 short chain dehydrogenase; Provisional

Probab=85.11  E-value=14  Score=31.36  Aligned_cols=85  Identities=16%  Similarity=0.111  Sum_probs=51.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhc-ccCC
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKY-SENE  145 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~-~~~~  145 (238)
                      ..+++|-.|++ |..+..+++.+. .+.+|+.+..+++..+.+.+.+....-..++.++.+|..+.  +..+.++ ....
T Consensus        13 ~gk~~lITGas-~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~   91 (313)
T PRK05854         13 SGKRAVVTGAS-DGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG   91 (313)
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence            45778888865 445566665543 35789999998877776666655432223578888886542  1211111 0114


Q ss_pred             CCeeEEEEcC
Q 026461          146 GSFDYAFVDA  155 (238)
Q Consensus       146 ~~fD~V~~d~  155 (238)
                      +..|+++.++
T Consensus        92 ~~iD~li~nA  101 (313)
T PRK05854         92 RPIHLLINNA  101 (313)
T ss_pred             CCccEEEECC
Confidence            6899998765

>PRK08818 prephenate dehydrogenase; Provisional

Probab=84.92  E-value=4.9  Score=35.29  Aligned_cols=33  Identities=12%  Similarity=-0.068  Sum_probs=21.7

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCC
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVN  104 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~--~~~~v~~iD~~  104 (238)
                      ..+|.-||. +|..+-+|+..+.  .+.+|+++|.+
T Consensus         4 ~~~I~IIGl-~GliGgslA~alk~~~~~~V~g~D~~   38 (370)
T PRK08818          4 QPVVGIVGS-AGAYGRWLARFLRTRMQLEVIGHDPA   38 (370)
T ss_pred             CCEEEEECC-CCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence            357888885 3555555555553  15689999984

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=84.88  E-value=20  Score=30.22  Aligned_cols=96  Identities=19%  Similarity=0.136  Sum_probs=57.8

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           67 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        67 ~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ......+||-.|+| .|..+..+++..  +.+|++++.+++..+.+++    .+..   .++...........      .
T Consensus       159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~------~  223 (330)
T cd08245         159 GPRPGERVAVLGIGGLGHLAVQYARAM--GFETVAITRSPDKRELARK----LGAD---EVVDSGAELDEQAA------A  223 (330)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----hCCc---EEeccCCcchHHhc------c
Confidence            34456688888886 666667777765  4689999988877666643    2422   12211111111111      2


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      +.+|+++-....   ......+++.|+++|.++.-
T Consensus       224 ~~~d~vi~~~~~---~~~~~~~~~~l~~~G~~i~~  255 (330)
T cd08245         224 GGADVILVTVVS---GAAAEAALGGLRRGGRIVLV  255 (330)
T ss_pred             CCCCEEEECCCc---HHHHHHHHHhcccCCEEEEE
Confidence            579988843221   34566778899999977753

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=84.88  E-value=15  Score=32.11  Aligned_cols=94  Identities=20%  Similarity=0.208  Sum_probs=54.3

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchh-HHHHHHHHHHcCCCCcEEEEe-cchhHHHHHHHhcccCCC
Q 026461           70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRET-YEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEG  146 (238)
Q Consensus        70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~-~~~a~~~~~~~~~~~~v~~~~-~d~~~~l~~~~~~~~~~~  146 (238)
                      +..+||-.|+| .|..++.+|+..  +.+|++++.+++. .+.+    +..|...   ++. .+. +.+...      .+
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~--Ga~Vi~~~~~~~~~~~~a----~~lGa~~---~i~~~~~-~~v~~~------~~  241 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAF--GLRVTVISRSSEKEREAI----DRLGADS---FLVTTDS-QKMKEA------VG  241 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHc--CCeEEEEeCChHHhHHHH----HhCCCcE---EEcCcCH-HHHHHh------hC
Confidence            45678888875 455556677765  4679999887543 3333    2345421   221 121 222222      23


Q ss_pred             CeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461          147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      .+|+|+--..   ....+....+.++++|.++.-..
T Consensus       242 ~~D~vid~~G---~~~~~~~~~~~l~~~G~iv~vG~  274 (375)
T PLN02178        242 TMDFIIDTVS---AEHALLPLFSLLKVSGKLVALGL  274 (375)
T ss_pred             CCcEEEECCC---cHHHHHHHHHhhcCCCEEEEEcc
Confidence            6898885332   23356677789999998886443

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=84.81  E-value=20  Score=29.26  Aligned_cols=80  Identities=11%  Similarity=0.152  Sum_probs=45.6

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH------HHHHHHhc
Q 026461           70 NAKKTIEIGVFT-GYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY  141 (238)
Q Consensus        70 ~~~~vLeiG~G~-G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~~~~~~  141 (238)
                      .++.+|-.|+++ +..+..+++.+. .+.+|+.++.+.+..+...+.....+   .+.++.+|..+      .+....+.
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~   85 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD---APIFLPLDVREPGQLEAVFARIAEE   85 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHHHHH
Confidence            467899999775 356666665542 25688888887654333333322222   23456666543      22222222


Q ss_pred             ccCCCCeeEEEEcC
Q 026461          142 SENEGSFDYAFVDA  155 (238)
Q Consensus       142 ~~~~~~fD~V~~d~  155 (238)
                         .+..|+++.++
T Consensus        86 ---~g~ld~lv~nA   96 (258)
T PRK07533         86 ---WGRLDFLLHSI   96 (258)
T ss_pred             ---cCCCCEEEEcC
Confidence               36899998775

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=84.81  E-value=6.8  Score=33.16  Aligned_cols=79  Identities=13%  Similarity=0.148  Sum_probs=48.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhcccCCC
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEG  146 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~~~~~~  146 (238)
                      ..++||-.| |+|..+.++++.+- .+.+|+++..++.............+...+++++.+|..+.  +...      -.
T Consensus         4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~------~~   76 (325)
T PLN02989          4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELA------ID   76 (325)
T ss_pred             CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHH------Hc
Confidence            356788888 67888888887663 24678777776654433322222223234688888888753  3333      24


Q ss_pred             CeeEEEEcC
Q 026461          147 SFDYAFVDA  155 (238)
Q Consensus       147 ~fD~V~~d~  155 (238)
                      ..|.|+..+
T Consensus        77 ~~d~vih~A   85 (325)
T PLN02989         77 GCETVFHTA   85 (325)
T ss_pred             CCCEEEEeC
Confidence            579888764

>PRK06914 short chain dehydrogenase; Provisional

Probab=84.81  E-value=9.8  Score=31.33  Aligned_cols=81  Identities=22%  Similarity=0.179  Sum_probs=51.3

Q ss_pred             CCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--H---HHHHhcccC
Q 026461           71 AKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--L---DQLLKYSEN  144 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l---~~~~~~~~~  144 (238)
                      .+.+|-.|+ +|..+..+++.+ ..+.+|++++.+++..+...+.....+...++.++.+|..+.  +   ....+.   
T Consensus         3 ~k~~lItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~---   78 (280)
T PRK06914          3 KKIAIVTGA-SSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKE---   78 (280)
T ss_pred             CCEEEEECC-CchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHh---
Confidence            356788884 555566666544 235689999988877766665555555445688888887552  1   111111   


Q ss_pred             CCCeeEEEEcC
Q 026461          145 EGSFDYAFVDA  155 (238)
Q Consensus       145 ~~~fD~V~~d~  155 (238)
                      .++.|.|+..+
T Consensus        79 ~~~id~vv~~a   89 (280)
T PRK06914         79 IGRIDLLVNNA   89 (280)
T ss_pred             cCCeeEEEECC
Confidence            36789988764

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=84.64  E-value=0.74  Score=41.10  Aligned_cols=106  Identities=11%  Similarity=0.018  Sum_probs=59.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe-cchhHHHHHHHhcccCCC
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEG  146 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~l~~~~~~~~~~~  146 (238)
                      .+|..+.++|+|.|.-...+....+. .-.++.||.+..+......+++.......+.+.. .--...++..     ...
T Consensus       199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~-----~~~  273 (491)
T KOG2539|consen  199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPID-----IKN  273 (491)
T ss_pred             cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCC-----ccc
Confidence            34567888988866654333333331 2469999999999999988876511111111111 0111122221     246


Q ss_pred             CeeEEEEcCCccc------hHHHHHHH-HhccCCCeEEEE
Q 026461          147 SFDYAFVDADKDN------YCNYHERL-MKLLKVGGIAVY  179 (238)
Q Consensus       147 ~fD~V~~d~~~~~------~~~~~~~~-~~~L~~gG~lv~  179 (238)
                      .||+|++.+....      -....+.+ ....++|+.+|+
T Consensus       274 ~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lVi  313 (491)
T KOG2539|consen  274 GYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVI  313 (491)
T ss_pred             ceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEE
Confidence            7999998753211      12222333 467889998775

>PRK07877 hypothetical protein; Provisional

Probab=84.63  E-value=11  Score=36.21  Aligned_cols=81  Identities=11%  Similarity=0.101  Sum_probs=50.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc------------------hhHHHHHHHHHHcCCCCcEEEEecch
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR------------------ETYEIGLPIIKKAGVDHKINFIESEA  131 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~------------------~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (238)
                      ...+|+-+|||.|......+....-.++++-+|.+.                  ..++.+++.+...+-.-+|+.+....
T Consensus       106 ~~~~V~IvG~GlGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i  185 (722)
T PRK07877        106 GRLRIGVVGLSVGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGL  185 (722)
T ss_pred             hcCCEEEEEecHHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence            457899999997776655443332026888888654                  34566677777666555566666544


Q ss_pred             hH-HHHHHHhcccCCCCeeEEEEcCC
Q 026461          132 LS-VLDQLLKYSENEGSFDYAFVDAD  156 (238)
Q Consensus       132 ~~-~l~~~~~~~~~~~~fD~V~~d~~  156 (238)
                      .. .+..+      -..+|+|+-..+
T Consensus       186 ~~~n~~~~------l~~~DlVvD~~D  205 (722)
T PRK07877        186 TEDNVDAF------LDGLDVVVEECD  205 (722)
T ss_pred             CHHHHHHH------hcCCCEEEECCC
Confidence            32 34444      357999885544

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=84.59  E-value=13  Score=31.07  Aligned_cols=96  Identities=16%  Similarity=0.164  Sum_probs=60.9

Q ss_pred             CCCEEEEE--cccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           70 NAKKTIEI--GVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        70 ~~~~vLei--G~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ++..||--  .-|.|.....|++..  +.++++.--..+..+.|+++    |...-|.+...|..+....+    .+...
T Consensus       146 pGhtVlvhaAAGGVGlll~Ql~ra~--~a~tI~~asTaeK~~~aken----G~~h~I~y~~eD~v~~V~ki----TngKG  215 (336)
T KOG1197|consen  146 PGHTVLVHAAAGGVGLLLCQLLRAV--GAHTIATASTAEKHEIAKEN----GAEHPIDYSTEDYVDEVKKI----TNGKG  215 (336)
T ss_pred             CCCEEEEEeccccHHHHHHHHHHhc--CcEEEEEeccHHHHHHHHhc----CCcceeeccchhHHHHHHhc----cCCCC
Confidence            44445433  223444555555543  57888888877777777765    65555677777766655554    23578


Q ss_pred             eeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      .|.++-.-.    .+.++.-+.+||++|.+|-
T Consensus       216 Vd~vyDsvG----~dt~~~sl~~Lk~~G~mVS  243 (336)
T KOG1197|consen  216 VDAVYDSVG----KDTFAKSLAALKPMGKMVS  243 (336)
T ss_pred             ceeeecccc----chhhHHHHHHhccCceEEE
Confidence            898884433    3445566789999998875

>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO)

Probab=84.46  E-value=1.3  Score=30.57  Aligned_cols=35  Identities=23%  Similarity=0.230  Sum_probs=24.7

Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ...||++++|+...-.++.+..+...++-||++++
T Consensus         9 G~e~~~~i~d~~~g~~pnal~a~~gtv~gGGllil   43 (92)
T PF08351_consen    9 GQEFDLLIFDAFEGFDPNALAALAGTVRGGGLLIL   43 (92)
T ss_dssp             T--BSSEEEE-SS---HHHHHHHHTTB-TT-EEEE
T ss_pred             CCccCEEEEEccCCCCHHHHHHHhcceecCeEEEE
Confidence            46899999999877789999999999999998887

; PDB: 2ZPA_B.

>PF14740 DUF4471: Domain of unknown function (DUF4471)

Probab=84.44  E-value=1.6  Score=36.77  Aligned_cols=56  Identities=21%  Similarity=0.362  Sum_probs=37.6

Q ss_pred             cEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          123 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       123 ~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      +|.|+..+..+.++.-..   -.+-||+||+.+...+...  ..+.++++|+|+|+++...
T Consensus       201 kVhFLPld~~~~L~~K~k---y~~~Fd~ifvs~s~vh~L~--p~l~~~~a~~A~LvvEtaK  256 (289)
T PF14740_consen  201 KVHFLPLDSLEKLPHKSK---YQNFFDLIFVSCSMVHFLK--PELFQALAPDAVLVVETAK  256 (289)
T ss_pred             EEEEeCchHHHHHhhHHh---hcCCCCEEEEhhhhHhhcc--hHHHHHhCCCCEEEEEcch
Confidence            466777776666554222   2689999999875332211  1366788999999999863

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=84.36  E-value=25  Score=31.58  Aligned_cols=104  Identities=13%  Similarity=0.097  Sum_probs=52.3

Q ss_pred             CCEEEEEc-ccccHHHHH--HHhhCCC-CCEEEEEeCCchh---HHHHHHHHHHcCCCCcEEEEe----cchhH----HH
Q 026461           71 AKKTIEIG-VFTGYSLLL--TALTIPE-DGQITAIDVNRET---YEIGLPIIKKAGVDHKINFIE----SEALS----VL  135 (238)
Q Consensus        71 ~~~vLeiG-~G~G~~t~~--la~~~~~-~~~v~~iD~~~~~---~~~a~~~~~~~~~~~~v~~~~----~d~~~----~l  135 (238)
                      +..|+=+| .|+|-+|..  ||..+.. +.+|..++.++..   +++.+.+....+    +.+..    .|...    .+
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~----vp~~~~~~~~dp~~i~~~~l  175 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKAR----IPFYGSYTESDPVKIASEGV  175 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccC----CeEEeecCCCCHHHHHHHHH
Confidence            44677777 677876643  4443321 3466666665533   333333333333    33332    23222    22


Q ss_pred             HHHHhcccCCCCeeEEEEcCCc--cc---hHHHHHHHHhccCCCeEEEEeccc
Q 026461          136 DQLLKYSENEGSFDYAFVDADK--DN---YCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       136 ~~~~~~~~~~~~fD~V~~d~~~--~~---~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ..+.     ...||+|++|-.-  +.   ...-+..+.+..+|.-++++-|..
T Consensus       176 ~~~~-----~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~  223 (429)
T TIGR01425       176 EKFK-----KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGS  223 (429)
T ss_pred             HHHH-----hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccc
Confidence            2221     3589999999532  12   223334444567787655554443

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK08328 hypothetical protein; Provisional

Probab=84.32  E-value=17  Score=29.49  Aligned_cols=79  Identities=16%  Similarity=0.062  Sum_probs=42.7

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc--------------------hhHHHHHHHHHHcCCCCcEEEEe
Q 026461           70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR--------------------ETYEIGLPIIKKAGVDHKINFIE  128 (238)
Q Consensus        70 ~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~--------------------~~~~~a~~~~~~~~~~~~v~~~~  128 (238)
                      ...+|+-+|||. |......+.... -++++.+|.+.                    ...+.+++.+...+..-+++...
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~  104 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAAG-VGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV  104 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe
Confidence            456899999973 444433333333 57899998543                    12333445555554333444444


Q ss_pred             cchhH-HHHHHHhcccCCCCeeEEEEcC
Q 026461          129 SEALS-VLDQLLKYSENEGSFDYAFVDA  155 (238)
Q Consensus       129 ~d~~~-~l~~~~~~~~~~~~fD~V~~d~  155 (238)
                      ....+ .+..+      -..+|+|+...
T Consensus       105 ~~~~~~~~~~~------l~~~D~Vid~~  126 (231)
T PRK08328        105 GRLSEENIDEV------LKGVDVIVDCL  126 (231)
T ss_pred             ccCCHHHHHHH------HhcCCEEEECC
Confidence            33222 22222      25799998643

>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]

Probab=84.28  E-value=15  Score=31.58  Aligned_cols=76  Identities=12%  Similarity=0.044  Sum_probs=45.5

Q ss_pred             CEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCcEEEEecc
Q 026461           72 KKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIESE  130 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~--~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~d  130 (238)
                      .+||-||+  |+.+..+++.+.  .-.++..||++.                   ...+.|.+.+.+.=....|.....+
T Consensus        41 ~kiLviGA--GGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~~v~~h~~k  118 (422)
T KOG2015|consen   41 CKILVIGA--GGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGCVVVPHRQK  118 (422)
T ss_pred             CcEEEEcc--CcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCcEEeeeecc
Confidence            67999998  556666665442  123555555532                   2344444444332223446777778


Q ss_pred             hhHHHHHHHhcccCCCCeeEEEEcC
Q 026461          131 ALSVLDQLLKYSENEGSFDYAFVDA  155 (238)
Q Consensus       131 ~~~~l~~~~~~~~~~~~fD~V~~d~  155 (238)
                      +.+....+      -..||+|+...
T Consensus       119 Iqd~~~~F------Yk~F~~iicGL  137 (422)
T KOG2015|consen  119 IQDKPISF------YKRFDLIICGL  137 (422)
T ss_pred             hhcCCHHH------HhhhceEEecc
Confidence            87765555      47999999764

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=84.24  E-value=4.4  Score=34.59  Aligned_cols=37  Identities=19%  Similarity=0.174  Sum_probs=29.4

Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEE-Eec
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV-YDN  181 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv-~~~  181 (238)
                      .+.+|+|++.-..-...+.++.+.+.+++..+++ +.|
T Consensus        65 ~~~~Dlviv~vKa~q~~~al~~l~~~~~~~t~vl~lqN  102 (307)
T COG1893          65 LGPADLVIVTVKAYQLEEALPSLAPLLGPNTVVLFLQN  102 (307)
T ss_pred             cCCCCEEEEEeccccHHHHHHHhhhcCCCCcEEEEEeC
Confidence            4689999998766677888999999999987544 444

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=84.08  E-value=0.98  Score=32.15  Aligned_cols=32  Identities=13%  Similarity=0.106  Sum_probs=22.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCC
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVN  104 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~  104 (238)
                      ++...+|||||.|...--|...   +-+=.|+|.-
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~R   89 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSE---GYPGWGIDAR   89 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhC---CCCccccccc
Confidence            4557999999999987665542   3344677764

; GO: 0008168 methyltransferase activity

>PLN02702 L-idonate 5-dehydrogenase

Probab=84.06  E-value=15  Score=31.62  Aligned_cols=103  Identities=17%  Similarity=0.210  Sum_probs=58.9

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEE--ecchhHHHHHHHhcccC
Q 026461           68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI--ESEALSVLDQLLKYSEN  144 (238)
Q Consensus        68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~--~~d~~~~l~~~~~~~~~  144 (238)
                      .....+||-+|+| .|..++.++.... ...|++++.+++..+.+++    .|....+.+.  ..+..+.+..+...  .
T Consensus       179 ~~~g~~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~--~  251 (364)
T PLN02702        179 IGPETNVLVMGAGPIGLVTMLAARAFG-APRIVIVDVDDERLSVAKQ----LGADEIVLVSTNIEDVESEVEEIQKA--M  251 (364)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----hCCCEEEecCcccccHHHHHHHHhhh--c
Confidence            4456688888764 4555677777654 3468899988776665554    3543222221  12222222222100  1


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      .+.+|+|+-....   ...+...+++|+++|.++.-
T Consensus       252 ~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~  284 (364)
T PLN02702        252 GGGIDVSFDCVGF---NKTMSTALEATRAGGKVCLV  284 (364)
T ss_pred             CCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEE
Confidence            3478988754321   34567788999999988753

>PRK07904 short chain dehydrogenase; Provisional

Probab=83.85  E-value=8.4  Score=31.47  Aligned_cols=81  Identities=19%  Similarity=0.238  Sum_probs=51.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-C-CCEEEEEeCCchh-HHHHHHHHHHcCCCCcEEEEecchhHH------HHHHH
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIP-E-DGQITAIDVNRET-YEIGLPIIKKAGVDHKINFIESEALSV------LDQLL  139 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~-~-~~~v~~iD~~~~~-~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~  139 (238)
                      .++++||-.|+ +|..+..+++.+- . +.+|+.++.+++. .+.+.+.+...+ ..++.++.+|..+.      ++...
T Consensus         6 ~~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~   83 (253)
T PRK07904          6 GNPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAF   83 (253)
T ss_pred             CCCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHH
Confidence            35678888887 5666777776642 2 2589999988775 665555555544 23588888886532      22221


Q ss_pred             hcccCCCCeeEEEEcC
Q 026461          140 KYSENEGSFDYAFVDA  155 (238)
Q Consensus       140 ~~~~~~~~fD~V~~d~  155 (238)
                       +   .+..|+++...
T Consensus        84 -~---~g~id~li~~a   95 (253)
T PRK07904         84 -A---GGDVDVAIVAF   95 (253)
T ss_pred             -h---cCCCCEEEEee
Confidence             1   25899888653

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=83.85  E-value=16  Score=29.67  Aligned_cols=80  Identities=15%  Similarity=0.134  Sum_probs=52.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--H----HHHHhcc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--L----DQLLKYS  142 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l----~~~~~~~  142 (238)
                      ..+++|-.| |+|..+..+++.+- .+.+|+.++.++...+...+.+...+  .++.++.+|..+.  +    ....+. 
T Consensus        11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~-   86 (259)
T PRK08213         11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLER-   86 (259)
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH-
Confidence            457889888 56777777776653 25689999998877776666665433  4577888887642  2    222111 


Q ss_pred             cCCCCeeEEEEcC
Q 026461          143 ENEGSFDYAFVDA  155 (238)
Q Consensus       143 ~~~~~fD~V~~d~  155 (238)
                        .+++|.|+..+
T Consensus        87 --~~~id~vi~~a   97 (259)
T PRK08213         87 --FGHVDILVNNA   97 (259)
T ss_pred             --hCCCCEEEECC
Confidence              35789998764

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=83.78  E-value=8.3  Score=32.24  Aligned_cols=87  Identities=20%  Similarity=0.172  Sum_probs=52.8

Q ss_pred             EEEEEcccccHHHHHHHhhCC-----CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           73 KTIEIGVFTGYSLLLTALTIP-----EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~-----~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      +|.=|||  |..+..++..+-     ...+|++.|.+++.++.+.+   ..|    ++.. .+..+..          ..
T Consensus         4 ~IgfIG~--G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~---~~g----~~~~-~~~~e~~----------~~   63 (272)
T PRK12491          4 QIGFIGC--GNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASD---KYG----ITIT-TNNNEVA----------NS   63 (272)
T ss_pred             eEEEECc--cHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHH---hcC----cEEe-CCcHHHH----------hh
Confidence            5778888  555555555432     12469999998876554433   223    2322 2333332          34


Q ss_pred             eeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      -|+||+.-.+......++.+.+.++++ .++++
T Consensus        64 aDiIiLavkP~~~~~vl~~l~~~~~~~-~lvIS   95 (272)
T PRK12491         64 ADILILSIKPDLYSSVINQIKDQIKND-VIVVT   95 (272)
T ss_pred             CCEEEEEeChHHHHHHHHHHHHhhcCC-cEEEE
Confidence            599999877777788888887777765 44444

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=83.77  E-value=13  Score=31.78  Aligned_cols=101  Identities=14%  Similarity=0.104  Sum_probs=55.2

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ..+..+||-.|+| .|..+..+|.... ...+++++.+++..+.+.+    .|...-+.....+..+.+..+.    ...
T Consensus       172 ~~~g~~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~~----~~~  242 (350)
T cd08256         172 IKFDDVVVLAGAGPLGLGMIGAARLKN-PKKLIVLDLKDERLALARK----FGADVVLNPPEVDVVEKIKELT----GGY  242 (350)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEcCCHHHHHHHHH----cCCcEEecCCCcCHHHHHHHHh----CCC
Confidence            4455666666653 4455566777664 3568889988776654443    3542111111122223333331    124


Q ss_pred             CeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      .+|+++-....   ...+....+.++++|.++.-
T Consensus       243 ~vdvvld~~g~---~~~~~~~~~~l~~~G~~v~~  273 (350)
T cd08256         243 GCDIYIEATGH---PSAVEQGLNMIRKLGRFVEF  273 (350)
T ss_pred             CCCEEEECCCC---hHHHHHHHHHhhcCCEEEEE
Confidence            69988743221   23466678899999987763

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=83.63  E-value=16  Score=30.63  Aligned_cols=98  Identities=11%  Similarity=0.059  Sum_probs=58.0

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecc-hhHHHHHHHhcccC
Q 026461           68 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLKYSEN  144 (238)
Q Consensus        68 ~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~l~~~~~~~~~  144 (238)
                      ..+..+||-.|+  +.|..++.++...  +.+++.+..+++..+.+++    .|...-+.....+ ..+.+....    .
T Consensus       138 ~~~~~~vlI~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~----~  207 (334)
T PTZ00354        138 VKKGQSVLIHAGASGVGTAAAQLAEKY--GAATIITTSSEEKVDFCKK----LAAIILIRYPDEEGFAPKVKKLT----G  207 (334)
T ss_pred             CCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEecCChhHHHHHHHHHh----C
Confidence            345568888874  5777777888776  3566778888777666643    3542111111112 222222221    1


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ...+|+++-...    ...+..+++.|+++|.++.
T Consensus       208 ~~~~d~~i~~~~----~~~~~~~~~~l~~~g~~i~  238 (334)
T PTZ00354        208 EKGVNLVLDCVG----GSYLSETAEVLAVDGKWIV  238 (334)
T ss_pred             CCCceEEEECCc----hHHHHHHHHHhccCCeEEE
Confidence            357999984322    3466777889999998875

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=83.50  E-value=1  Score=37.67  Aligned_cols=38  Identities=16%  Similarity=0.198  Sum_probs=30.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhH
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY  108 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~  108 (238)
                      ...++|||+|||+|.-.+......  ...++..|.+.+.+
T Consensus       115 ~~~k~vLELgCg~~Lp~i~~~~~~--~~~~~fqD~na~vl  152 (282)
T KOG2920|consen  115 FSGKRVLELGCGAALPGIFAFVKG--AVSVHFQDFNAEVL  152 (282)
T ss_pred             ecCceeEecCCcccccchhhhhhc--cceeeeEecchhhe
Confidence            467899999999999998877653  26788888888766

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=83.47  E-value=4.2  Score=38.25  Aligned_cols=69  Identities=13%  Similarity=0.152  Sum_probs=46.9

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH--HHHHHHhcccCCCCe
Q 026461           72 KKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF  148 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~l~~~~~~~~~~~~f  148 (238)
                      .+|+-+|+  |..+..+++.+.. +..++.+|.|++.++.+++.    |    ..++.||+.+  .+...     +-+..
T Consensus       401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~----g----~~v~~GDat~~~~L~~a-----gi~~A  465 (621)
T PRK03562        401 PRVIIAGF--GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF----G----MKVFYGDATRMDLLESA-----GAAKA  465 (621)
T ss_pred             CcEEEEec--ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc----C----CeEEEEeCCCHHHHHhc-----CCCcC
Confidence            57888888  5555555554432 45799999999999888652    3    5678888865  34432     24578


Q ss_pred             eEEEEcC
Q 026461          149 DYAFVDA  155 (238)
Q Consensus       149 D~V~~d~  155 (238)
                      |++++--
T Consensus       466 ~~vvv~~  472 (621)
T PRK03562        466 EVLINAI  472 (621)
T ss_pred             CEEEEEe
Confidence            8887653

>PRK05867 short chain dehydrogenase; Provisional

Probab=83.29  E-value=15  Score=29.71  Aligned_cols=80  Identities=21%  Similarity=0.151  Sum_probs=50.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH------HHHHHhcc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKYS  142 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~~~~  142 (238)
                      ..+++|-.|++. ..+..+++.+. .+.+|+.++.+++..+...+.+...+  .++.++.+|..+.      +....+. 
T Consensus         8 ~~k~vlVtGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~-   83 (253)
T PRK05867          8 HGKRALITGAST-GIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAE-   83 (253)
T ss_pred             CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH-
Confidence            467889888644 44555555442 35789999998887777666665544  3577777776432      2222111 


Q ss_pred             cCCCCeeEEEEcC
Q 026461          143 ENEGSFDYAFVDA  155 (238)
Q Consensus       143 ~~~~~fD~V~~d~  155 (238)
                        .++.|.++..+
T Consensus        84 --~g~id~lv~~a   94 (253)
T PRK05867         84 --LGGIDIAVCNA   94 (253)
T ss_pred             --hCCCCEEEECC
Confidence              36899998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	238
3c3y_A	237	Crystal Structure Of Pfomt, Phenylpropanoid And Fla		1e-87
1sui_A	247	Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase L		3e-81
3r3h_A	242	Crystal Structure Of O-Methyltransferase From Legio		4e-35
3cbg_A	232	Functional And Structural Characterization Of A Cat		7e-33
2avd_A	229	Crystal Structure Of Human Catechol-O-Methyltransfe		1e-32
3tr6_A	225	Structure Of A O-Methyltransferase From Coxiella Bu		5e-29
2hnk_A	239	Crystal Structure Of Sam-dependent O-methyltransfer		2e-28
3tfw_A	248	Crystal Structure Of A Putative O-Methyltransferase		2e-16
3dul_A	223	Crystal Structure Analysis Of The O-Methyltransfera		2e-12
2gpy_A	233	Crystal Structure Of Putative O-methyltransferase F		9e-11
3oe4_A	221	Rat Catechol O-Methyltransferase In Complex With A		1e-07
3ntv_A	232	Crystal Structure Of A Putative Caffeoyl-Coa O-Meth		2e-07
2zlb_A	223	Crystal Structure Of Apo Form Of Rat Catechol-O- Me		2e-07
1jr4_A	221	Catechol O-Methyltransferase Bisubstrate-Inhibitor		4e-07
3a7e_A	216	Crystal Structure Of Human Comt Complexed With Sam		2e-05
3bwm_A	214	Crystal Structure Of Human Catechol O-Methyltransfe		3e-05
3bwy_A	214	Crystal Structure Of Human 108m Catechol O- Methylt		6e-05

>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid O- Methyltransferase From M. Crystallinum Length = 237

Iteration: 1
 Score =  319 bits (817), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 150/232 (64%), Positives = 189/232 (81%), Gaps = 1/232 (0%)
Query: 7   QAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLL 66
           +   + GLLQSE+L +YIL TSVYPRE   LK++R+    HP + M T+P AGQLM+ +L
Sbjct: 7   KQVKNTGLLQSEELCQYILRTSVYPREAGFLKELREANESHPDSYMSTSPLAGQLMSFVL 66
Query: 67  RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF 126
           +LVNAKKTIE+GVFTGYSLLLTAL+IP+DG+ITAID +RE YEIGLP I+KAGV+HKINF
Sbjct: 67  KLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINF 126
Query: 127 IESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGG 186
           IES+A+  LD LL+  E+EGS+D+ FVDADK NY  YHERLMKL+KVGGI  YDNTLWGG
Sbjct: 127 IESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDNTLWGG 186
Query: 187 TVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF 238
           TVA PE +VPD F   +R+A+++LN+ LA DPR+++ H+ LGDGIT CRR++
Sbjct: 187 TVAQPESEVPD-FMKENREAVIELNKLLAADPRIEIVHLPLGDGITFCRRLY 237

>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase Length = 247

Iteration: 1
 Score =  297 bits (761), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 137/231 (59%), Positives = 181/231 (78%)
Query: 7   QAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLL 66
           Q    K LLQS+ LY+YILETSV+PRE E +K++R+VTA HPW +M T+ D GQ ++MLL
Sbjct: 16  QEVGHKSLLQSDALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLL 75
Query: 67  RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF 126
           +L+NAK T+EIGV+TGYSLL TAL IPEDG+I A+D+N+E YE+GLP+IKKAGVDHKI+F
Sbjct: 76  KLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDF 135
Query: 127 IESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGG 186
            E  AL VLD+++K  +N GS+D+ FVDADKDNY NYH+RL+ L+KVGG+  YDNTLW G
Sbjct: 136 REGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNG 195
Query: 187 TVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237
           +V  P +     +    R  +L+LN++LA DPR+++  + +GDGITICRRI
Sbjct: 196 SVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRRI 246

>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella Pneumophila Length = 242

Iteration: 1
 Score =  144 bits (363), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 87/229 (37%), Positives = 126/229 (55%), Gaps = 15/229 (6%)
Query: 12  KGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNA 71
           K L  + +LY+Y+L+ S+  RE   L  +R  T+    A M  AP+  Q M ML+RL  A
Sbjct: 4   KHLSLTPELYKYLLDISL--REHPALAALRKETSTMELANMQVAPEQAQFMQMLIRLTRA 61
Query: 72  KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 131
           KK +E+G FTGYS L  +L +P+DGQ+   D+N    +   P  ++A  +HKI      A
Sbjct: 62  KKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPA 121
Query: 132 LSVLDQLLKYSENEG---SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTV 188
           L  L  LL    NEG    FD+ F+DADK NY NY+E  +KL+   G+   DN  W G V
Sbjct: 122 LDTLHSLL----NEGGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAIDNIFWDGKV 177
Query: 189 AVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237
             P +       G +R+ I  LN+ + +D RV +S +A+ DG+ + + I
Sbjct: 178 IDPNDT-----SGQTRE-IKKLNQVIKNDSRVFVSLLAIADGMFLVQPI 220

>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A Cationdependent O-Methyltransferase From The Cyanobacterium Synechocystis Sp. Strain Pcc 6803 Length = 232

Iteration: 1
 Score =  137 bits (344), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 81/200 (40%), Positives = 111/200 (55%), Gaps = 11/200 (5%)
Query: 37  LKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG 96
           L ++R  TA  P A M  +P+  Q + +L+ L  AK+ +EIGVF GYS L  AL +P DG
Sbjct: 39  LAQLRRETAHLPGAPMQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDG 98
Query: 97  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 156
           QI A D +     I     +KAGV  KI+     AL+ L+QL +  +    FD  F+DAD
Sbjct: 99  QIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQ-GKPLPEFDLIFIDAD 157
Query: 157 KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAV--PEEQVPDHFRGSSRQAILDLNRSL 214
           K NY  Y+E  + LL+ GG+ V DN LW G V    P+E        +  Q +   NR L
Sbjct: 158 KRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQE--------AQTQVLQQFNRDL 209
Query: 215 ADDPRVQLSHVALGDGITIC 234
           A D RV++S + LGDG+T+ 
Sbjct: 210 AQDERVRISVIPLGDGMTLA 229

>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase Domain Containing 1 Length = 229

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/226 (37%), Positives = 129/226 (57%), Gaps = 11/226 (4%)
Query: 14  LLQSED--LYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNA 71
           LL  ED  L++Y+L  S+  RE   L+ +R +T + P        +  QL+A L RL+ A
Sbjct: 13  LLPPEDSRLWQYLLSRSM--REHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQA 70
Query: 72  KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 131
           KK +++G FTGYS L  AL +P DG++   +V+ +  E+G P+ ++A  +HKI+     A
Sbjct: 71  KKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPA 130
Query: 132 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVP 191
           L  LD+LL   E  G+FD A VDADK+N   Y+ER ++LL+ GGI      LW G V  P
Sbjct: 131 LETLDELLAAGEA-GTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQP 189
Query: 192 EEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237
            +         + + + +LN  +  D RV +S + LGDG+T+  +I
Sbjct: 190 PKG------DVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI 229

>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii Length = 225

Iteration: 1
 Score =  124 bits (311), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 80/230 (34%), Positives = 125/230 (54%), Gaps = 10/230 (4%)
Query: 8   AASSKGLLQSEDLYRYILETSVYPREPEPLKKIRD-VTADHPWAMMGTAPDAGQLMAMLL 66
           A S    L + +LY+Y+L+ S+  REP  L ++R+  T         TAP+  QL+A+L+
Sbjct: 3   AXSINTTLLTPELYQYLLQVSL--REPPLLAELREETTRSFSTYAXQTAPEQAQLLALLV 60
Query: 67  RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF 126
           +L  AKK I+IG FTGYS +   L +P+DG +   DV+ ++  +     +KAG+  KI  
Sbjct: 61  KLXQAKKVIDIGTFTGYSAIAXGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGL 120
Query: 127 IESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGG 186
             S A   L +L+ ++     +D  ++DADK N   Y+E  +KLL+ GG+   DN L  G
Sbjct: 121 RLSPAKDTLAELI-HAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVLRRG 179
Query: 187 TVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 236
            VA  E Q  ++      Q I   N+ +  D RV    + +GDG+T+ R+
Sbjct: 180 QVADEENQSENN------QLIRLFNQKVYKDERVDXILIPIGDGLTLARK 223

>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase From Pathogenic Bacterium Leptospira Interrogans Length = 239

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/237 (35%), Positives = 123/237 (51%), Gaps = 18/237 (7%)
Query: 10  SSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLV 69
           S K +  +E L  YI   SV  REP+   K+R  T     A M  +P+ GQ + +L ++ 
Sbjct: 2   SRKNISLTESLEEYIFRNSV--REPDSFLKLRKETGTLAQANMQISPEEGQFLNILTKIS 59
Query: 70  NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 129
            AK+ IEIG FTGYS L  A  +PEDG+I   DV+ E   +     K+ G+++KI     
Sbjct: 60  GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLG 119
Query: 130 EALSVLDQLL----------KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 179
            AL  L  L+           ++    S D  F+DADK+NY NY+  ++KLLK GG+ + 
Sbjct: 120 SALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIA 179
Query: 180 DNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 236
           DN LW G+VA    Q P      S   I   N  + +D  V +S V + DG+++ R+
Sbjct: 180 DNVLWDGSVADLSHQEP------STVGIRKFNELVYNDSLVDVSLVPIADGVSLVRK 230

>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From Klebsiella Pneumoniae Length = 248

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 4/138 (2%)
Query: 55  APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI 114
           A + GQ +A+L+RL  AK+ +EIG   GYS +  A  +P DGQ+  ++ +    ++    
Sbjct: 48  AANQGQFLALLVRLTQAKRILEIGTLGGYSTIWXARELPADGQLLTLEADAHHAQVAREN 107
Query: 115 IKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG 174
           ++ AGVD ++   E  AL  L+ L +      +FD  F+DADK N  +Y    ++  + G
Sbjct: 108 LQLAGVDQRVTLREGPALQSLESLGECP----AFDLIFIDADKPNNPHYLRWALRYSRPG 163
Query: 175 GIAVYDNTLWGGTVAVPE 192
            + + DN +  G V  P+
Sbjct: 164 TLIIGDNVVRDGEVVNPQ 181

>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From Bacillus Cereus Length = 223

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 14/187 (7%)
Query: 37  LKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG 96
           L+++  V A         +P  G+ + +L+++  A+  +EIG   GYS +  A  +   G
Sbjct: 25  LEEVLQVNAAANLPAHDVSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGG 84
Query: 97  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG--SFDYAFVD 154
           ++  ++ + +  +I    I++A ++ ++      AL  L Q+    ENE    FD+ F+D
Sbjct: 85  RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQI----ENEKYEPFDFIFID 140
Query: 155 ADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSR-QAILDLNRS 213
           ADK N   Y E  +KL + G + + DN        V E +V D+     R Q I      
Sbjct: 141 ADKQNNPAYFEWALKLSRPGTVIIGDNV-------VREGEVIDNTSNDPRVQGIRRFYEL 193
Query: 214 LADDPRV 220
           +A +PRV
Sbjct: 194 IAAEPRV 200

>pdb|2GPY|A Chain A, Crystal Structure Of Putative O-methyltransferase From Bacillus Halodurans Length = 233

Iteration: 1
 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 9/171 (5%)
Query: 65  LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKI 124
           LL+     + +EIG   GYS +  A  +PE   I +I+ +   YE     +K  G++ +I
Sbjct: 49  LLKXAAPARILEIGTAIGYSAIRXAQALPE-ATIVSIERDERRYEEAHKHVKALGLESRI 107
Query: 125 NFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW 184
             +  +AL + ++L  Y      FD  F+DA K  Y  + +     ++ GG+ + DN L+
Sbjct: 108 ELLFGDALQLGEKLELYP----LFDVLFIDAAKGQYRRFFDXYSPXVRPGGLILSDNVLF 163
Query: 185 GGTVAVPEEQVPDHFRGSSRQAILD-LNRSLADDPRVQLSHVALGDGITIC 234
            G VA   E   +H R       +D  N+ L + P+       +GDGI I 
Sbjct: 164 RGLVA---ETDIEHKRHKQLATKIDTYNQWLLEHPQYDTRIFPVGDGIAIS 211

>pdb|3OE4|A Chain A, Rat Catechol O-Methyltransferase In Complex With A Catechol-Type, Purine-Containing Bisubstrate Inhibitor - Humanized Form Length = 221

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 93/198 (46%), Gaps = 19/198 (9%)
Query: 13  GLLQSEDLYRYILETSVYPREPEP-LKKIRDVTADHPWAM-MGTAPDAGQLMAMLLRLVN 70
           G  + + + RY+ + +  P +P+  L+ I        WAM +G A   GQ+M  ++R  +
Sbjct: 2   GDTKEQRILRYV-QQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDA--KGQIMDAVIREYS 58
Query: 71  AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 130
               +E+G + GYS +  A  +    ++  +++N +   I   ++  AG+  K+  +   
Sbjct: 59  PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGA 118
Query: 131 ALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK--LLKVGGIAVYDNTLWGGTV 188
           +  ++ QL K  + + + D  F+D  KD Y      L K  LL+ G + + DN +  GT 
Sbjct: 119 SQDLIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGT- 176
Query: 189 AVPEEQVPD---HFRGSS 203
                  PD   + RGSS
Sbjct: 177 -------PDFLAYVRGSS 187

>pdb|3NTV|A Chain A, Crystal Structure Of A Putative Caffeoyl-Coa O-Methyltransferase From Staphylococcus Aureus Length = 232

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 7/174 (4%)
Query: 61  LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV 120
           L+  L+R  N K  +EIG   GYS    A +I +D  +T I+ N    +     +     
Sbjct: 62  LIKQLIRXNNVKNILEIGTAIGYSSXQFA-SISDDIHVTTIERNETXIQYAKQNLATYHF 120
Query: 121 DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180
           ++++  IE  AL   + +     N+  +D  F+DA K     + E    LLK  G+ + D
Sbjct: 121 ENQVRIIEGNALEQFENV-----NDKVYDXIFIDAAKAQSKKFFEIYTPLLKHQGLVITD 175
Query: 181 NTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITIC 234
           N L+ G V+        + R   ++ + D N  L   P    + + + DG+ I 
Sbjct: 176 NVLYHGFVSDIGIVRSRNVRQXVKK-VQDYNEWLIKQPGYTTNFLNIDDGLAIS 228

>pdb|2ZLB|A Chain A, Crystal Structure Of Apo Form Of Rat Catechol-O- Methyltransferase Length = 223

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 94/200 (47%), Gaps = 19/200 (9%)
Query: 11  SKGLLQSEDLYRYILETSVYPREPEP-LKKIRDVTADHPWAM-MGTAPDAGQLMAMLLRL 68
           S G  + + + RY+ + +  P +P+  L+ I        WAM +G A   GQ+M  ++R 
Sbjct: 2   SMGDTKEQRILRYV-QQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDA--KGQIMDAVIRE 58
Query: 69  VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE 128
            +    +E+G + GYS +  A  +    ++  +++N +   I   ++  AG+  K+  + 
Sbjct: 59  YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILN 118
Query: 129 SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK--LLKVGGIAVYDNTLWGG 186
             +  ++ QL K  + + + D  F+D  KD Y      L K  LL+ G + + DN +  G
Sbjct: 119 GASQDLIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPG 177
Query: 187 TVAVPEEQVPD---HFRGSS 203
           T        PD   + RGSS
Sbjct: 178 T--------PDFLAYVRGSS 189

>pdb|1JR4|A Chain A, Catechol O-Methyltransferase Bisubstrate-Inhibitor Complex Length = 221

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 93/198 (46%), Gaps = 19/198 (9%)
Query: 13  GLLQSEDLYRYILETSVYPREPEP-LKKIRDVTADHPWAM-MGTAPDAGQLMAMLLRLVN 70
           G  + + + RY+ + +  P +P+  L+ I        WAM +G A   GQ+M  ++R  +
Sbjct: 2   GDTKEQRILRYV-QQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDA--KGQIMDAVIREYS 58
Query: 71  AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 130
               +E+G + GYS +  A  +    ++  +++N +   I   ++  AG+  K+  +   
Sbjct: 59  PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGA 118
Query: 131 ALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK--LLKVGGIAVYDNTLWGGTV 188
           +  ++ QL K  + + + D  F+D  KD Y      L K  LL+ G + + DN +  GT 
Sbjct: 119 SQDLIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGT- 176
Query: 189 AVPEEQVPD---HFRGSS 203
                  PD   + RGSS
Sbjct: 177 -------PDFLAYVRGSS 187

>pdb|3A7E|A Chain A, Crystal Structure Of Human Comt Complexed With Sam And 3,5- Dinitrocatechol Length = 216

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 15/198 (7%)
Query: 11  SKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVN 70
           S G  + + +  ++L+ +        L+ I        WAM       G+++  +++   
Sbjct: 2   SMGDTKEQRILNHVLQHAEPGNAQSVLEAIDTYCEQKEWAM-NVGDKKGKIVDAVIQEHQ 60
Query: 71  AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 130
               +E+G + GYS +  A  +    ++  I++N +   I   ++  AGV  K+  +   
Sbjct: 61  PSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGA 120
Query: 131 ALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK--LLKVGGIAVYDNTLWGGTV 188
           +  ++ QL K  + + + D  F+D  KD Y      L +  LL+ G + + DN +  G  
Sbjct: 121 SQDIIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGA- 178
Query: 189 AVPEEQVPD---HFRGSS 203
                  PD   H RGSS
Sbjct: 179 -------PDFLAHVRGSS 189

>pdb|3BWM|A Chain A, Crystal Structure Of Human Catechol O-Methyltransferase With Bound Sam And Dnc Length = 214

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 15/160 (9%)
Query: 49  WAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY 108
           WAM       G+++  +++       +E+G + GYS +  A  +    ++  I++N +  
Sbjct: 37  WAM-NVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCA 95
Query: 109 EIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 168
            I   ++  AGV  K+  +   +  ++ QL K  + + + D  F+D  KD Y      L 
Sbjct: 96  AITQRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLE 154
Query: 169 K--LLKVGGIAVYDNTLWGGTVAVPEEQVPD---HFRGSS 203
           +  LL+ G + + DN +  G         PD   H RGSS
Sbjct: 155 ECGLLRKGTVLLADNVICPGA--------PDFLAHVRGSS 186

>pdb|3BWY|A Chain A, Crystal Structure Of Human 108m Catechol O- Methyltransferase Bound With S-Adenosylmethionine And Inhibitor Dinitrocatechol Length = 214

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 15/160 (9%)
Query: 49  WAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY 108
           WAM       G+++  +++       +E+G + GYS +  A  +    ++  I++N +  
Sbjct: 37  WAM-NVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCA 95
Query: 109 EIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 168
            I   ++  AG+  K+  +   +  ++ QL K  + + + D  F+D  KD Y      L 
Sbjct: 96  AITQRMVDFAGMKDKVTLVVGASQDIIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLE 154
Query: 169 K--LLKVGGIAVYDNTLWGGTVAVPEEQVPD---HFRGSS 203
           +  LL+ G + + DN +  G         PD   H RGSS
Sbjct: 155 ECGLLRKGTVLLADNVICPGA--------PDFLAHVRGSS 186

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	238
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	1e-106
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	1e-105
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	7e-94
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	5e-93
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	8e-93
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	1e-91
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	8e-91
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	3e-90
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	2e-89
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	1e-88
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	4e-87
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	7e-82
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	2e-77
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	2e-76
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	1e-04
3ocj_A	305	Putative exported protein; structural genomics, PS	4e-04
2b25_A	336	Hypothetical protein; structural genomics, methyl	7e-04

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237

 Score =  304 bits (782), Expect = e-106
 Identities = 150/238 (63%), Positives = 190/238 (79%), Gaps = 1/238 (0%)

Query: 1   MTDKAKQAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQ 60
           M     +   + GLLQSE+L +YIL TSVYPRE   LK++R+    HP + M T+P AGQ
Sbjct: 1   MDFAVMKQVKNTGLLQSEELCQYILRTSVYPREAGFLKELREANESHPDSYMSTSPLAGQ 60

Query: 61  LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV 120
           LM+ +L+LVNAKKTIE+GVFTGYSLLLTAL+IP+DG+ITAID +RE YEIGLP I+KAGV
Sbjct: 61  LMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGV 120

Query: 121 DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180
           +HKINFIES+A+  LD LL+  E+EGS+D+ FVDADK NY  YHERLMKL+KVGGI  YD
Sbjct: 121 EHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYD 180

Query: 181 NTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF 238
           NTLWGGTVA PE +VPD  +  +R+A+++LN+ LA DPR+++ H+ LGDGIT CRR++
Sbjct: 181 NTLWGGTVAQPESEVPDFMK-ENREAVIELNKLLAADPRIEIVHLPLGDGITFCRRLY 237

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247

 Score =  302 bits (776), Expect = e-105
 Identities = 136/228 (59%), Positives = 180/228 (78%)

Query: 10  SSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLV 69
             K LLQS+ LY+YILETSV+PRE E +K++R+VTA HPW +M T+ D GQ ++MLL+L+
Sbjct: 19  GHKSLLQSDALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLI 78

Query: 70  NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 129
           NAK T+EIGV+TGYSLL TAL IPEDG+I A+D+N+E YE+GLP+IKKAGVDHKI+F E 
Sbjct: 79  NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREG 138

Query: 130 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVA 189
            AL VLD+++K  +N GS+D+ FVDADKDNY NYH+RL+ L+KVGG+  YDNTLW G+V 
Sbjct: 139 PALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVV 198

Query: 190 VPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237
            P +     +    R  +L+LN++LA DPR+++  + +GDGITICRRI
Sbjct: 199 APPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRRI 246

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Length = 242

 Score =  274 bits (703), Expect = 7e-94
 Identities = 83/228 (36%), Positives = 121/228 (53%), Gaps = 9/228 (3%)

Query: 10  SSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLV 69
             K L  + +LY+Y+L+ S+  RE   L  +R  T+    A M  AP+  Q M ML+RL 
Sbjct: 2   VMKHLSLTPELYKYLLDISL--REHPALAALRKETSTMELANMQVAPEQAQFMQMLIRLT 59

Query: 70  NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 129
            AKK +E+G FTGYS L  +L +P+DGQ+   D+N    +   P  ++A  +HKI     
Sbjct: 60  RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLG 119

Query: 130 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVA 189
            AL  L  LL     E  FD+ F+DADK NY NY+E  +KL+   G+   DN  W G V 
Sbjct: 120 PALDTLHSLLNEGG-EHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAIDNIFWDGKVI 178

Query: 190 VPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237
            P +           + I  LN+ + +D RV +S +A+ DG+ + + I
Sbjct: 179 DPNDTSGQ------TREIKKLNQVIKNDSRVFVSLLAIADGMFLVQPI 220

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Length = 239

 Score =  272 bits (697), Expect = 5e-93
 Identities = 84/237 (35%), Positives = 122/237 (51%), Gaps = 18/237 (7%)

Query: 10  SSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLV 69
           S K +  +E L  YI   SV  REP+   K+R  T     A M  +P+ GQ + +L ++ 
Sbjct: 2   SRKNISLTESLEEYIFRNSV--REPDSFLKLRKETGTLAQANMQISPEEGQFLNILTKIS 59

Query: 70  NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 129
            AK+ IEIG FTGYS L  A  +PEDG+I   DV+ E   +     K+ G+++KI     
Sbjct: 60  GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLG 119

Query: 130 EALSVLDQLLK----------YSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 179
            AL  L  L+           ++    S D  F+DADK+NY NY+  ++KLLK GG+ + 
Sbjct: 120 SALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIA 179

Query: 180 DNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 236
           DN LW G+VA    Q P          I   N  + +D  V +S V + DG+++ R+
Sbjct: 180 DNVLWDGSVADLSHQEPST------VGIRKFNELVYNDSLVDVSLVPIADGVSLVRK 230

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225

 Score =  271 bits (694), Expect = 8e-93
 Identities = 80/228 (35%), Positives = 126/228 (55%), Gaps = 10/228 (4%)

Query: 10  SSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADH-PWAMMGTAPDAGQLMAMLLRL 68
           S    L + +LY+Y+L+ S+  REP  L ++R+ T        M TAP+  QL+A+L++L
Sbjct: 5   SINTTLLTPELYQYLLQVSL--REPPLLAELREETTRSFSTYAMQTAPEQAQLLALLVKL 62

Query: 69  VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE 128
           + AKK I+IG FTGYS +   L +P+DG +   DV+ ++  +     +KAG+  KI    
Sbjct: 63  MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRL 122

Query: 129 SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTV 188
           S A   L +L+   +    +D  ++DADK N   Y+E  +KLL+ GG+   DN L  G V
Sbjct: 123 SPAKDTLAELIHAGQ-AWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVLRRGQV 181

Query: 189 AVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 236
           A  E Q  ++      Q I   N+ +  D RV +  + +GDG+T+ R+
Sbjct: 182 ADEENQSENN------QLIRLFNQKVYKDERVDMILIPIGDGLTLARK 223

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232

 Score =  267 bits (686), Expect = 1e-91
 Identities = 84/227 (37%), Positives = 117/227 (51%), Gaps = 9/227 (3%)

Query: 10  SSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLV 69
                     LY Y+   S+   +   L ++R  TA  P A M  +P+  Q + +L+ L 
Sbjct: 14  GKGITGFDPSLYSYL--QSISADDSFYLAQLRRETAHLPGAPMQISPEQAQFLGLLISLT 71

Query: 70  NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 129
            AK+ +EIGVF GYS L  AL +P DGQI A D +     I     +KAGV  KI+    
Sbjct: 72  GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLG 131

Query: 130 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVA 189
            AL+ L+QL +  +    FD  F+DADK NY  Y+E  + LL+ GG+ V DN LW G V 
Sbjct: 132 PALATLEQLTQ-GKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVT 190

Query: 190 VPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 236
             + Q          Q +   NR LA D RV++S + LGDG+T+  +
Sbjct: 191 EVDPQEAQT------QVLQQFNRDLAQDERVRISVIPLGDGMTLALK 231

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Length = 229

 Score =  266 bits (681), Expect = 8e-91
 Identities = 84/235 (35%), Positives = 130/235 (55%), Gaps = 11/235 (4%)

Query: 5   AKQAASSKGLLQSED--LYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLM 62
             +    + LL  ED  L++Y+L  S+  RE   L+ +R +T + P        +  QL+
Sbjct: 4   PWRGRREQCLLPPEDSRLWQYLLSRSM--REHPALRSLRLLTLEQPQGDSMMTCEQAQLL 61

Query: 63  AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH 122
           A L RL+ AKK +++G FTGYS L  AL +P DG++   +V+ +  E+G P+ ++A  +H
Sbjct: 62  ANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEH 121

Query: 123 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 182
           KI+     AL  LD+LL  +   G+FD A VDADK+N   Y+ER ++LL+ GGI      
Sbjct: 122 KIDLRLKPALETLDELLA-AGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRV 180

Query: 183 LWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237
           LW G V  P +           + + +LN  +  D RV +S + LGDG+T+  +I
Sbjct: 181 LWRGKVLQPPKGDVAA------ECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI 229

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Length = 248

 Score =  265 bits (680), Expect = 3e-90
 Identities = 54/225 (24%), Positives = 96/225 (42%), Gaps = 17/225 (7%)

Query: 16  QSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTI 75
           Q   +  Y+++  +       L ++ +            A + GQ +A+L+RL  AK+ +
Sbjct: 11  QWSAVDNYLIKALI--PGDPVLDRVLENNHRAGLPAHDVAANQGQFLALLVRLTQAKRIL 68

Query: 76  EIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 135
           EIG   GYS +  A  +P DGQ+  ++ +    ++    ++ AGVD ++   E  AL  L
Sbjct: 69  EIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSL 128

Query: 136 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQV 195
           + L        +FD  F+DADK N  +Y    ++  + G + + DN +  G V  P+   
Sbjct: 129 ESL----GECPAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSAD 184

Query: 196 PDHFRGSSRQAILDLNRSLADDPRV-----QLSHVALGDGITICR 235
                    Q +      +  +PR+     Q       DG T+  
Sbjct: 185 ER------VQGVRQFIEMMGAEPRLTATALQTVGTKGWDGFTLAW 223

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Length = 223

 Score =  262 bits (672), Expect = 2e-89
 Identities = 51/228 (22%), Positives = 96/228 (42%), Gaps = 15/228 (6%)

Query: 14  LLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKK 73
           +     + +Y+ +  +   +   L+++  V A         +P  G+ + +L+++  A+ 
Sbjct: 4   IETWTAVDQYVSDVLI--PKDSTLEEVLQVNAAANLPAHDVSPTQGKFLQLLVQIQGARN 61

Query: 74  TIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 133
            +EIG   GYS +  A  +   G++  ++ + +  +I    I++A ++ ++      AL 
Sbjct: 62  ILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALD 121

Query: 134 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEE 193
            L Q+    E    FD+ F+DADK N   Y E  +KL + G + + DN +  G V     
Sbjct: 122 SLQQIEN--EKYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTS 179

Query: 194 QVPDHFRGSSRQAILDLNRSLADDPRV-----QLSHVALGDGITICRR 236
             P        Q I      +A +PRV     Q       DG  +   
Sbjct: 180 NDPR------VQGIRRFYELIAAEPRVSATALQTVGSKGYDGFIMAVV 221

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Length = 232

 Score =  260 bits (667), Expect = 1e-88
 Identities = 48/227 (21%), Positives = 95/227 (41%), Gaps = 11/227 (4%)

Query: 10  SSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLV 69
             +G    +   +Y+++  ++  +   ++ +R+    +   +         L+  L+R+ 
Sbjct: 15  VPRGSHMDDLNKKYLID--LHQHQNSSIEVLREFAEVNE--VPIVDRLTLDLIKQLIRMN 70

Query: 70  NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 129
           N K  +EIG   GYS +  A  I +D  +T I+ N    +     +     ++++  IE 
Sbjct: 71  NVKNILEIGTAIGYSSMQFAS-ISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEG 129

Query: 130 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVA 189
            AL   + +     N+  +D  F+DA K     + E    LLK  G+ + DN L+ G V+
Sbjct: 130 NALEQFENV-----NDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVS 184

Query: 190 VPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 236
                   + R    + + D N  L   P    + + + DG+ I  +
Sbjct: 185 DIGIVRSRNVR-QMVKKVQDYNEWLIKQPGYTTNFLNIDDGLAISIK 230

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Length = 233

 Score =  256 bits (657), Expect = 4e-87
 Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 11/222 (4%)

Query: 15  LQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKT 74
           L  E L  Y+ +    P   + ++++     +    +M       + +  LL++    + 
Sbjct: 3   LIEERLKHYLEKQI--PARDQYIEQMEREAHEQQVPIMD--LLGMESLLHLLKMAAPARI 58

Query: 75  IEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 134
           +EIG   GYS +  A  +P +  I +I+ +   YE     +K  G++ +I  +  +AL +
Sbjct: 59  LEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQL 117

Query: 135 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQ 194
            ++L    E    FD  F+DA K  Y  + +    +++ GG+ + DN L+ G VA  + +
Sbjct: 118 GEKL----ELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSDNVLFRGLVAETDIE 173

Query: 195 VPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 236
              H +      I   N+ L + P+       +GDGI I  +
Sbjct: 174 HKRHKQ--LATKIDTYNQWLLEHPQYDTRIFPVGDGIAISIK 213

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210

 Score =  242 bits (621), Expect = 7e-82
 Identities = 37/221 (16%), Positives = 80/221 (36%), Gaps = 18/221 (8%)

Query: 17  SEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIE 76
              +  Y+    + P     +  +  +  +    +       G+L+ +L R+   +  + 
Sbjct: 7   DSRIGAYL--DGLLPEADPVVAAMEQIARER--NIPIVDRQTGRLLYLLARIKQPQLVVV 62

Query: 77  IGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 136
            G   G +    A  I    ++  ID +R+  E    ++   G+  ++     + L +  
Sbjct: 63  PGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAA 122

Query: 137 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVP 196
                   +   D  F+D D  N  +  ER+ + L    + +  N L  G+VA   E   
Sbjct: 123 -------GQRDIDILFMDCDVFNGADVLERMNRCLAKNALLIAVNALRRGSVAESHEDP- 174

Query: 197 DHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237
                    A+ + N  L+       + V +G+G+ +  R+
Sbjct: 175 ------ETAALREFNHHLSRRRDFFTTIVPVGNGVLLGYRL 209

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221

 Score =  231 bits (592), Expect = 2e-77
 Identities = 45/226 (19%), Positives = 81/226 (35%), Gaps = 20/226 (8%)

Query: 16  QSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVN---AK 72
             E L  Y+  T+        + + R+  A+    +       GQL+  L    N   + 
Sbjct: 4   AFEYLRTYVESTT---ETDAAVARAREDAAEFG--LPAPDEMTGQLLTTLAATTNGNGST 58

Query: 73  KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV-DHKINFIESEA 131
             I I    G   L     + ++  +T ID   E       + ++AG    ++ F+ S  
Sbjct: 59  GAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRP 118

Query: 132 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVP 191
           L V+ +L        S+   F      +     +    LL+ GG  V  + L  GT+A  
Sbjct: 119 LDVMSRL-----ANDSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVLADALLDGTIADQ 173

Query: 192 EEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237
             +  D       QA  D +  +       ++ + LG G+T+  + 
Sbjct: 174 TRKDRDT------QAARDADEYIRSIEGAHVARLPLGAGLTVVTKA 213

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Length = 221

 Score =  229 bits (585), Expect = 2e-76
 Identities = 42/224 (18%), Positives = 88/224 (39%), Gaps = 17/224 (7%)

Query: 13  GLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAK 72
           G  + + + RY+ + +  P +P+ + +  D         M      GQ+M  ++R  +  
Sbjct: 2   GDTKEQRILRYVQQNA-KPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPS 60

Query: 73  KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 132
             +E+G + GYS +  A  +    ++  +++N +   I   ++  AG+  K+  +   + 
Sbjct: 61  LVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQ 120

Query: 133 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM--KLLKVGGIAVYDNTLWGGTVAV 190
            ++ QL K   +  + D  F+D  KD Y      L    LL+ G + + DN +  GT   
Sbjct: 121 DLIPQLKK-KYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDF 179

Query: 191 PEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITIC 234
                           +   +          L ++ + DG+   
Sbjct: 180 LA-------------YVRGSSSFECTHYSSYLEYMKVVDGLEKA 210

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* Length = 236

 Score = 44.5 bits (104), Expect = 8e-06
 Identities = 24/148 (16%), Positives = 44/148 (29%), Gaps = 22/148 (14%)

Query: 51  MMGTAPDAGQLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY 108
           M          M  L         + +E+G     +   + +      +   I+ N   +
Sbjct: 42  MERWETP---YMHALAAAASSKGGRVLEVGFGMAIAA--SKVQEAPIDEHWIIECNDGVF 96

Query: 109 EIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH---- 164
           +       +    HK+  ++     V   L      +G FD    D    +   +H    
Sbjct: 97  QRLRDWAPRQT--HKVIPLKGLWEDVAPTLP-----DGHFDGILYDTYPLSEETWHTHQF 149

Query: 165 ----ERLMKLLKVGGIAVYDNTLWGGTV 188
                   +LLK GG+  Y N    G +
Sbjct: 150 NFIKNHAFRLLKPGGVLTYCNLTSWGEL 177

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 6e-05
 Identities = 31/165 (18%), Positives = 52/165 (31%), Gaps = 33/165 (20%)

Query: 90  LTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF--IESEALSVLDQLLKYSENEGS 147
           L++ ED  +   D  ++  ++   I+ K  +DH I      S  L +   LL   E    
Sbjct: 22  LSVFEDAFVDNFDC-KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE--M 78

Query: 148 FDYAFVDADKDNYCNYHERLMKLLKVGGIA---------VYDNTLWGGTVAVPEEQVPDH 198
                 +  + NY    + LM  +K                 + L+       +  V   
Sbjct: 79  VQKFVEEVLRINY----KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-- 132

Query: 199 FRGSSRQAILDLNR---SLADDPRVQLSHVALGDG-----ITICR 235
            R    Q  L L +    L     V +    LG G     + +C 
Sbjct: 133 -R---LQPYLKLRQALLELRPAKNVLI-DGVLGSGKTWVALDVCL 172

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 8/114 (7%)

Query: 42  DVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAI 101
           D   +         P     +AM+L +    + I+ GV +G    + A  +   G++ A 
Sbjct: 84  DEIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAY 143

Query: 102 DVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA 155
           +   E  ++    + K G+  ++     +     D+           D  F+D 
Sbjct: 144 EKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE--------KDVDALFLDV 189

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 39.7 bits (92), Expect = 4e-04
 Identities = 23/152 (15%), Positives = 44/152 (28%), Gaps = 15/152 (9%)

Query: 36  PLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTI-EIGVFTGYSLLLTALTIPE 94
            L  +  V  +   A++ T    G     L R +     +  +       LL    +   
Sbjct: 83  ALAPLERVFYERLPAVLATRERHGHFRRALQRHLRPGCVVASVPCGWMSELLALDYSACP 142

Query: 95  DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD 154
             Q+  ID + E  +    +     +  +I     +A  +        +    +D    +
Sbjct: 143 GVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKL--------DTREGYDLLTSN 194

Query: 155 ------ADKDNYCNYHERLMKLLKVGGIAVYD 180
                  D       + R  + LK GG  V  
Sbjct: 195 GLNIYEPDDARVTELYRRFWQALKPGGALVTS 226

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336

 Score = 39.0 bits (90), Expect = 7e-04
 Identities = 20/126 (15%), Positives = 43/126 (34%), Gaps = 3/126 (2%)

Query: 56  PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII 115
           P    ++  ++ +      +E G  +G   L  +  +   G++ + +V ++ +++     
Sbjct: 91  PKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNY 150

Query: 116 KKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLK 172
           K      K++ +E    +V       S           DA   D  N           LK
Sbjct: 151 KHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLK 210

Query: 173 VGGIAV 178
            GG+  
Sbjct: 211 HGGVCA 216

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	238
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	100.0
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	100.0
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	100.0
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	100.0
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	100.0
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	100.0
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	100.0
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	100.0
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	100.0
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	100.0
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	100.0
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.98
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.97
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.97
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.83
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	99.79
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.76
2o07_A	304	Spermidine synthase; structural genomics, structur	99.74
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.72
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.72
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.72
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.72
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.72
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.72
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.72
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.71
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.71
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.71
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.7
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.7
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.7
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.7
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.69
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.69
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.69
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.69
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.67
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.67
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.66
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.66
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.66
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.66
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.66
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.66
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.66
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.66
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.65
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.65
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.65
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.65
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.65
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.64
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.64
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.64
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.64
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.64
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.64
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.64
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.64
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.63
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.63
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.62
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.62
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.62
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.62
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.62
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.62
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.62
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.61
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.61
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.61
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.61
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.6
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.59
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.59
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.59
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.59
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.58
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.58
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.58
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.58
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.58
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.58
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.58
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.58
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.57
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.57
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.57
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.57
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.57
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.57
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.57
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.57
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.57
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.56
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.56
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.56
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.56
3ocj_A	305	Putative exported protein; structural genomics, PS	99.56
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.56
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.56
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.56
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.56
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.56
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.55
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.55
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.55
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.55
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.55
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.55
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.54
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.54
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.54
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.54
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.54
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.54
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.54
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.54
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.54
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.54
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.54
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.54
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.53
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.53
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.53
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.53
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.53
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.53
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.53
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.53
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.53
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.52
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.52
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.52
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.52
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.52
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.51
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.51
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.51
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.51
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.5
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.5
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.5
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.5
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.5
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.49
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.49
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.49
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.49
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.48
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.48
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.48
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.48
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.48
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.48
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.48
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.48
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.48
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.47
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.47
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.47
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.47
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.47
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.46
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.46
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.46
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.46
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.46
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.46
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.46
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.45
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.45
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.45
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.45
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.44
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.44
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.44
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.44
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.44
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.44
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.44
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.44
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.44
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.43
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.43
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.43
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.43
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.43
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.43
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.43
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.42
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.42
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.42
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.41
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.41
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.41
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.41
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.41
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.4
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.4
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.4
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.4
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.39
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.39
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.38
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.38
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.38
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.38
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.38
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.38
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.38
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	99.37
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	99.37
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.37
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.37
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.36
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.36
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.36
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.35
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.35
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.35
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.35
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.34
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.34
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	99.34
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.32
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	99.31
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.31
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.3
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.3
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.29
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.29
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.29
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.28
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.27
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.27
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.25
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.24
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.24
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.23
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.23
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	99.23
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.22
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.22
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.22
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.21
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.2
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.2
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.19
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.16
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.15
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.15
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.14
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.14
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.12
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.12
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.11
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.1
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.1
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.09
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.07
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.06
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.06
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.05
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.98
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.96
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.96
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.96
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.96
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.95
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.95
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.94
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.93
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.85
3khk_A	544	Type I restriction-modification system methylation	98.85
3lkd_A	542	Type I restriction-modification system methyltrans	98.83
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.83
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.82
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.81
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.77
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.76
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.73
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.66
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.65
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.6
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.47
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.45
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.31
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.02
3ufb_A	530	Type I restriction-modification system methyltran	97.97
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.97
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	97.95
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.92
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.88
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.85
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.8
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.76
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.67
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.62
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.58
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.57
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.5
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.45
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.35
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	97.34
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.29
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	97.24
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	97.23
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	97.15
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	97.14
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	97.05
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	97.02
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	97.02
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	97.0
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	96.96
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	96.94
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	96.93
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	96.93
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.89
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	96.87
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.85
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	96.82
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.81
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.78
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.76
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.73
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	96.73
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.71
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	96.7
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.66
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	96.65
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	96.63
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	96.6
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.57
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	96.54
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.52
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	96.48
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	96.48
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.47
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.43
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	96.42
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	96.41
4eye_A	342	Probable oxidoreductase; structural genomics, niai	96.37
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	96.36
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	96.35
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	96.35
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	96.33
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	96.29
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	96.29
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	96.15
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	96.14
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	96.13
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	96.13
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	96.07
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	96.06
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	95.96
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	95.94
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.94
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	95.92
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	95.9
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	95.82
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	95.81
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.72
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	95.72
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	95.71
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	95.68
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	95.63
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	95.51
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	95.45
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	95.43
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	95.4
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.36
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.07
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	95.05
2zig_A	297	TTHA0409, putative modification methylase; methylt	95.05
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	94.87
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	94.86
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	94.79
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	94.73
3me5_A	482	Cytosine-specific methyltransferase; structural ge	94.53
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.33
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	94.27
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	94.19
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	94.16
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	94.14
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	94.06
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	94.05
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	94.03
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	93.99
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	93.97
3c85_A	183	Putative glutathione-regulated potassium-efflux S	93.9
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	93.88
1id1_A	153	Putative potassium channel protein; RCK domain, E.	93.87
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	93.83
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	93.82
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	93.82
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	93.64
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	93.62
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	93.54
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	93.46
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	93.43
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	93.36
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	93.32
4ezb_A	317	Uncharacterized conserved protein; structural geno	93.31
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	93.31
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	93.22
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	92.97
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	92.97
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	92.74
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	92.73
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	92.66
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	92.66
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	92.66
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	92.6
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	92.58
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	92.57
1lnq_A	336	MTHK channels, potassium channel related protein;	92.29
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	92.24
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	92.19
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	92.11
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	92.1
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	92.06
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	91.9
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	91.89
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	91.86
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	91.85
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	91.82
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	91.81
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	91.71
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	91.68
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	91.66
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	91.62
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	91.55
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	91.51
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	91.48
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	91.45
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	90.95
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	90.94
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	90.9
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	90.87
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	90.8
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	90.8
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	90.64
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	90.54
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	90.52
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	90.52
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	90.46
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	90.41
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	90.21
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	90.11
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	90.09
4g65_A	461	TRK system potassium uptake protein TRKA; structur	90.05
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	89.91
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	89.89
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	89.81
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	89.79
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	89.67
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	89.56
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	89.44
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	89.36
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	89.27
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	89.25
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	89.21
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	89.18
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	89.14
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	89.12
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	89.07
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	88.97
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	88.95
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	88.91
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	88.63
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	88.59
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	88.58
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	88.47
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	88.27
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	88.27
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	88.21
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	88.15
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	88.1
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	88.02
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	87.67
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	87.61
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	87.61
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	87.58
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	87.43
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	87.26
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	87.21
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	87.1
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	87.08
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	86.97
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	86.94
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	86.93
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	86.86
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	86.86
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	86.81
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	86.75
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	86.74
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	86.67
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	86.61
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	86.57

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=100.00  E-value=6.3e-38  Score=256.03  Aligned_cols=231  Identities=65%  Similarity=1.079  Sum_probs=200.2

Q ss_pred             HHhhhhcCCCCcHHHHHHHHhccCCCCCChHHHHHHHHHhcCCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHH
Q 026461            6 KQAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSL   85 (238)
Q Consensus         6 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t   85 (238)
                      .++|..+....++.+++|+.+++.++.+++.+.++++.+.+++++.+.+.+..++++..++...++++|||||||+|+++
T Consensus         6 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~   85 (237)
T 3c3y_A            6 MKQVKNTGLLQSEELCQYILRTSVYPREAGFLKELREANESHPDSYMSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSL   85 (237)
T ss_dssp             -------CCBSCHHHHHHHHHHHTGGGSCHHHHHHHHHHTTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHH
T ss_pred             cccccccccCchHHHHHHHHHcccCCCCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHhhCCCEEEEeCCCCCHHH
Confidence            45566678889999999999987667888999999999988888888899999999999999889999999999999999


Q ss_pred             HHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHH
Q 026461           86 LLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE  165 (238)
Q Consensus        86 ~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~  165 (238)
                      +++++.+++.++|+++|+++++++.|++++...++.++++++.+|+.+.++.+..++...++||+||+|+++..+..+++
T Consensus        86 ~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~~~~~~~l~  165 (237)
T 3c3y_A           86 LLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHE  165 (237)
T ss_dssp             HHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCGGGHHHHHH
T ss_pred             HHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCchHHHHHHHH
Confidence            99999988789999999999999999999999999888999999999988766432111378999999999999999999


Q ss_pred             HHHhccCCCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEc
Q 026461          166 RLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  237 (238)
Q Consensus       166 ~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~  237 (238)
                      .+.++|+|||+|+++|++|.|.+..+.+..+...|. ....+++|++.+.++|+++++++|+++|+.|++|+
T Consensus       166 ~~~~~L~pGG~lv~d~~~~~g~~~~~~~~~~~~~r~-~~~~i~~~~~~l~~~~~~~~~~lp~~dG~~~~~~~  236 (237)
T 3c3y_A          166 RLMKLVKVGGIVAYDNTLWGGTVAQPESEVPDFMKE-NREAVIELNKLLAADPRIEIVHLPLGDGITFCRRL  236 (237)
T ss_dssp             HHHHHEEEEEEEEEECTTGGGGGGSCGGGSCGGGHH-HHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHHhcCCCeEEEEecCCcCCccCCCcccchhhHHH-HHHHHHHHHHHHhcCCCeEEEEEEeCCceEEEEEc
Confidence            999999999999999999999988774433333444 56779999999999999999999999999999987

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=100.00  E-value=1.8e-37  Score=254.87  Aligned_cols=232  Identities=59%  Similarity=1.035  Sum_probs=199.9

Q ss_pred             HHhhhhcCCCCcHHHHHHHHhccCCCCCChHHHHHHHHHhcCCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHH
Q 026461            6 KQAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSL   85 (238)
Q Consensus         6 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t   85 (238)
                      .+.|..+....++++++|+.+++.++.+++.+.++++.+.+++++.+.+.+..+.++..++...++++|||||||+|+++
T Consensus        15 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~   94 (247)
T 1sui_A           15 HQEVGHKSLLQSDALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSL   94 (247)
T ss_dssp             ------CCSBSCHHHHHHHHHHHTSSSCTTHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCGGGHHH
T ss_pred             ccccccccCCchHHHHHHHHHcccCCCCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHhhCcCEEEEeCCCcCHHH
Confidence            34555677888999999999987678888999999999988888888999999999999999889999999999999999


Q ss_pred             HHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHH
Q 026461           86 LLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE  165 (238)
Q Consensus        86 ~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~  165 (238)
                      +++++.++++++|+++|+++.+++.|++++...++.++++++.+|+.+.++.+..++...++||+||+|+....+..+++
T Consensus        95 ~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~~~~~~~l~  174 (247)
T 1sui_A           95 LATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHK  174 (247)
T ss_dssp             HHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCSTTHHHHHH
T ss_pred             HHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCchHHHHHHHH
Confidence            99999988679999999999999999999999998888999999999987765321101378999999998889999999


Q ss_pred             HHHhccCCCeEEEEeccccCccccCCCCCCCCCc-ccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEcC
Q 026461          166 RLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHF-RGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF  238 (238)
Q Consensus       166 ~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~~  238 (238)
                      .+.++|+|||+++++|++|+|.+.++....++.. |. ....+++|++.+..+++++++++|+++|+.+++|+.
T Consensus       175 ~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~-~~~~i~~~~~~l~~~~~~~~~~lp~~dG~~l~~k~~  247 (247)
T 1sui_A          175 RLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRY-YRDFVLELNKALAVDPRIEICMLPVGDGITICRRIK  247 (247)
T ss_dssp             HHHHHBCTTCCEEEECTTGGGGGGCCTTSCCCHHHHH-HHHHHHHHHHHHHTCTTBCCEEECSTTCEEEECBCC
T ss_pred             HHHHhCCCCeEEEEecCCcCCcccCCCccchhhhhhH-HHHHHHHHHHHHhhCCCeEEEEEecCCccEEEEEcC
Confidence            9999999999999999999999988754332211 33 566799999999999999999999999999999863

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=100.00  E-value=3.3e-37  Score=252.51  Aligned_cols=221  Identities=38%  Similarity=0.602  Sum_probs=193.9

Q ss_pred             hhhcCCCCcHHHHHHHHhccCCCCCChHHHHHHHHHhcCCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHH
Q 026461            9 ASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLT   88 (238)
Q Consensus         9 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~l   88 (238)
                      |+.+....++.+.+|+.++.  +.+++.+.++++.+.+.+++.+.+.+..++++..++...++++|||||||+|++++++
T Consensus         1 m~~~~~~~~~~~~~Y~~~~~--~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~l   78 (242)
T 3r3h_A            1 MVMKHLSLTPELYKYLLDIS--LREHPALAALRKETSTMELANMQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAM   78 (242)
T ss_dssp             ---CCCCCCHHHHHHHHHHH--CCCCHHHHHHHHTTSSSGGGGTSCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHH
T ss_pred             CCCCcccCCHHHHHHHHHhc--CCCCHHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHH
Confidence            45567788999999999975  3677889999998888777788899999999999999999999999999999999999


Q ss_pred             HhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHH
Q 026461           89 ALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM  168 (238)
Q Consensus        89 a~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~  168 (238)
                      ++.++++++|+++|+++++++.|++++...++.++++++.+|+.+.++.+..+ ...++||+||+|++...+..+++.+.
T Consensus        79 a~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~-~~~~~fD~V~~d~~~~~~~~~l~~~~  157 (242)
T 3r3h_A           79 SLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNE-GGEHQFDFIFIDADKTNYLNYYELAL  157 (242)
T ss_dssp             HHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHH-HCSSCEEEEEEESCGGGHHHHHHHHH
T ss_pred             HHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhc-cCCCCEeEEEEcCChHHhHHHHHHHH
Confidence            99987689999999999999999999999999889999999999987765321 01378999999999889999999999


Q ss_pred             hccCCCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEcC
Q 026461          169 KLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF  238 (238)
Q Consensus       169 ~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~~  238 (238)
                      ++|+|||+|+++|++|+|.+.++....+      .+..+++|++.+.++|+|+++++|+++|+.|++|++
T Consensus       158 ~~LkpGG~lv~d~~~~~g~v~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~lp~~dG~~~~~k~~  221 (242)
T 3r3h_A          158 KLVTPKGLIAIDNIFWDGKVIDPNDTSG------QTREIKKLNQVIKNDSRVFVSLLAIADGMFLVQPIA  221 (242)
T ss_dssp             HHEEEEEEEEEECSSSSSCSSCTTCCCH------HHHHHHHHHHHHHTCCSEEEEEESSSSCEEEEEEC-
T ss_pred             HhcCCCeEEEEECCccCCcccCccccCh------HHHHHHHHHHHHhhCCCEEEEEEEccCceEEEEEcC
Confidence            9999999999999999999887654321      456799999999999999999999999999999974

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=100.00  E-value=1.4e-35  Score=239.61  Aligned_cols=205  Identities=22%  Similarity=0.327  Sum_probs=182.4

Q ss_pred             CcHHHHHHHHhccCCCCCChHHHHHHHHHhcCCCCCccCcHhHHHHHHHHHhhcCCC---EEEEEcccccHHHHHHHhhC
Q 026461           16 QSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAK---KTIEIGVFTGYSLLLTALTI   92 (238)
Q Consensus        16 ~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~---~vLeiG~G~G~~t~~la~~~   92 (238)
                      ..+.+.+|+.++.   ++++.+.+++..+.+.+++  .+.+..++++..++...+++   +|||||||+|++++++++.+
T Consensus         4 ~~~~~~~y~~~~~---~~~~~l~~~~~~a~~~~~p--~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~   78 (221)
T 3dr5_A            4 AFEYLRTYVESTT---ETDAAVARAREDAAEFGLP--APDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGL   78 (221)
T ss_dssp             HHHHHHHHHHTTS---CCCHHHHHHHHHHHHTTCC--CCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHcC---CCCHHHHHHHHHHHHcCCC--CCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhC
Confidence            3478899999843   5788999999998887554  47899999999999988888   99999999999999999998


Q ss_pred             CCCCEEEEEeCCchhHHHHHHHHHHcCCC-CcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhcc
Q 026461           93 PEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL  171 (238)
Q Consensus        93 ~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L  171 (238)
                      +++++|+++|+++++++.|++++...++. ++++++++|+.+.++.+.     .++||+||+|+....+..+++.+.++|
T Consensus        79 ~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~-----~~~fD~V~~d~~~~~~~~~l~~~~~~L  153 (221)
T 3dr5_A           79 ADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLA-----NDSYQLVFGQVSPMDLKALVDAAWPLL  153 (221)
T ss_dssp             CTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSC-----TTCEEEEEECCCTTTHHHHHHHHHHHE
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhc-----CCCcCeEEEcCcHHHHHHHHHHHHHHc
Confidence            77899999999999999999999999998 789999999998876541     479999999999999999999999999


Q ss_pred             CCCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEE
Q 026461          172 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR  236 (238)
Q Consensus       172 ~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~  236 (238)
                      +|||+++++|++|+|.+.++...    .+  .+..+++|++++.++|+++++++|+++|+.+++|
T Consensus       154 kpGG~lv~dn~~~~g~v~~~~~~----~~--~~~~~~~~~~~l~~~~~~~~~~lp~gdGl~~~~~  212 (221)
T 3dr5_A          154 RRGGALVLADALLDGTIADQTRK----DR--DTQAARDADEYIRSIEGAHVARLPLGAGLTVVTK  212 (221)
T ss_dssp             EEEEEEEETTTTGGGTCSCSSCC----CH--HHHHHHHHHHHHTTCTTEEEEEESSTTCEEEEEE
T ss_pred             CCCcEEEEeCCCCCCcCCCCCCC----Ch--HHHHHHHHHHHHhhCCCeeEEEeeccchHHHHHH
Confidence            99999999999999998876432    11  5567899999999999999999999999999997

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=100.00  E-value=3.1e-34  Score=231.67  Aligned_cols=222  Identities=36%  Similarity=0.567  Sum_probs=195.0

Q ss_pred             HhhhhcCCCCcHHHHHHHHhccCCCCCChHHHHHHHHHh-cCCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHH
Q 026461            7 QAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTA-DHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSL   85 (238)
Q Consensus         7 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t   85 (238)
                      ++|+.+....++.+.+|+.++.  +..++.+.++++.+. .++++.+.+.+..++++..++...++++|||||||+|+++
T Consensus         2 ~~m~~~~~~~~~~~~~y~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~   79 (225)
T 3tr6_A            2 NAMSINTTLLTPELYQYLLQVS--LREPPLLAELREETTRSFSTYAMQTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSA   79 (225)
T ss_dssp             --CCCCSCCCCHHHHHHHHHTT--CCCCHHHHHHHHHHHHHCTTGGGSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHH
T ss_pred             CccccCCCCCCHHHHHHHHHhc--CCCCHHHHHHHHHHHhhCCCCccccCHHHHHHHHHHHHhhCCCEEEEeCCcchHHH
Confidence            3477788889999999999964  467788899998887 8888888899999999999999889999999999999999


Q ss_pred             HHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHH
Q 026461           86 LLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE  165 (238)
Q Consensus        86 ~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~  165 (238)
                      .+++..+++.++|+++|+++.+++.+++++...++.++++++++|+.+.++.+... ...++||+||+|++...+..+++
T Consensus        80 ~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~~~fD~v~~~~~~~~~~~~l~  158 (225)
T 3tr6_A           80 IAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHA-GQAWQYDLIYIDADKANTDLYYE  158 (225)
T ss_dssp             HHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTT-TCTTCEEEEEECSCGGGHHHHHH
T ss_pred             HHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhc-cCCCCccEEEECCCHHHHHHHHH
Confidence            99999887679999999999999999999999999888999999998887766321 01179999999998888999999


Q ss_pred             HHHhccCCCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEc
Q 026461          166 RLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  237 (238)
Q Consensus       166 ~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~  237 (238)
                      .+.++|+|||+++++|++|.|.+..+....+      ....+++|++.+..+++++++++|+++|+.+++|+
T Consensus       159 ~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~lp~~dG~~~~~k~  224 (225)
T 3tr6_A          159 ESLKLLREGGLIAVDNVLRRGQVADEENQSE------NNQLIRLFNQKVYKDERVDMILIPIGDGLTLARKK  224 (225)
T ss_dssp             HHHHHEEEEEEEEEECSSGGGGGGCTTCCCH------HHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHHhcCCCcEEEEeCCCcCCcccCccccCh------HHHHHHHHHHHHhcCCCeEEEEEEcCCccEEEEEC
Confidence            9999999999999999999999887654311      45679999999999999999999999999999986

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=100.00  E-value=4.3e-34  Score=232.52  Aligned_cols=221  Identities=38%  Similarity=0.559  Sum_probs=192.2

Q ss_pred             hhhhcCCCCcHHHHHHHHhccCCCCCChHHHHHHHHHhcCCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHH
Q 026461            8 AASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLL   87 (238)
Q Consensus         8 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~   87 (238)
                      +|.-+....++.+.+|+.+++  +++++.+.+++..+.+.+++.+.+.+..++++..++...++++|||||||+|+++++
T Consensus        12 ~~~~~~~~~~~~~~~y~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~   89 (232)
T 3cbg_A           12 SMGKGITGFDPSLYSYLQSIS--ADDSFYLAQLRRETAHLPGAPMQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALA   89 (232)
T ss_dssp             ---CCBTTSCHHHHHHHHHTS--CCCCHHHHHHHHHTTTSTTGGGSCCHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHH
T ss_pred             ccccccccchHHHHHHHHHhC--CCCCHHHHHHHHHHHHcCCCccCcCHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHH
Confidence            455566778899999999864  467788999999988888877789999999999999888899999999999999999


Q ss_pred             HHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHH
Q 026461           88 TALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL  167 (238)
Q Consensus        88 la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~  167 (238)
                      ++..+++.++|+++|+++.+++.|++++...++.++++++.+|+.+.++.+... ...++||+||+|+....+..+++.+
T Consensus        90 la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~-~~~~~fD~V~~d~~~~~~~~~l~~~  168 (232)
T 3cbg_A           90 MALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQG-KPLPEFDLIFIDADKRNYPRYYEIG  168 (232)
T ss_dssp             HHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTS-SSCCCEEEEEECSCGGGHHHHHHHH
T ss_pred             HHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc-CCCCCcCEEEECCCHHHHHHHHHHH
Confidence            999987678999999999999999999999998888999999998887766321 0017899999999888899999999


Q ss_pred             HhccCCCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEc
Q 026461          168 MKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  237 (238)
Q Consensus       168 ~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~  237 (238)
                      .++|+|||+++++|+.|.|.+.++....     . ....+++|++.+..+|++.++++|+++|+.+++|+
T Consensus       169 ~~~LkpgG~lv~~~~~~~g~~~~~~~~~-----~-~~~~~~~~~~~l~~~~~~~~~~lp~~dG~~~~~~~  232 (232)
T 3cbg_A          169 LNLLRRGGLMVIDNVLWHGKVTEVDPQE-----A-QTQVLQQFNRDLAQDERVRISVIPLGDGMTLALKK  232 (232)
T ss_dssp             HHTEEEEEEEEEECTTGGGGGGCSSCCS-----H-HHHHHHHHHHHHTTCTTEEEEEECSBTCEEEEEEC
T ss_pred             HHHcCCCeEEEEeCCCcCCccCCcccCC-----h-HHHHHHHHHHHHhhCCCeEEEEEEcCCeEEEEEeC
Confidence            9999999999999999999988764321     1 66779999999999999999999999999999985

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=100.00  E-value=5e-33  Score=224.36  Aligned_cols=212  Identities=23%  Similarity=0.385  Sum_probs=187.9

Q ss_pred             cHHHHHHHHhccCCCCCChHHHHHHHHHhcCCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCC
Q 026461           17 SEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG   96 (238)
Q Consensus        17 ~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~   96 (238)
                      .+.+.+|+.++.  +.+++.+.+++..+.+.+++.+.+.+..++++..++...++++|||||||+|+++.++++.+++.+
T Consensus         7 ~~~~~~y~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~   84 (223)
T 3duw_A            7 WTAVDQYVSDVL--IPKDSTLEEVLQVNAAANLPAHDVSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGG   84 (223)
T ss_dssp             HHHHHHHHHHHH--SCCCHHHHHHHHHHHHTTCCSCSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSC
T ss_pred             HHHHHHHHHHhC--CCCCHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCC
Confidence            367889999864  477888999999998888888888999999999999888999999999999999999999987678


Q ss_pred             EEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeE
Q 026461           97 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI  176 (238)
Q Consensus        97 ~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~  176 (238)
                      +|+++|+++.+++.|++++...++.++++++++|+.+.++.+...  ..++||+||+|+....+..+++.+.++|+|||+
T Consensus        85 ~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~--~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~  162 (223)
T 3duw_A           85 RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENE--KYEPFDFIFIDADKQNNPAYFEWALKLSRPGTV  162 (223)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHT--TCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc--CCCCcCEEEEcCCcHHHHHHHHHHHHhcCCCcE
Confidence            999999999999999999999999888999999999887766432  126799999999988999999999999999999


Q ss_pred             EEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeec-----CCeeEEEEEcC
Q 026461          177 AVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVAL-----GDGITICRRIF  238 (238)
Q Consensus       177 lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~-----~~G~~i~~~~~  238 (238)
                      ++++|++|.|.+..+....+      ....+++|++.+..+++++++++|+     ++|+.++++++
T Consensus       163 lv~~~~~~~g~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~dG~~~~~~~~  223 (223)
T 3duw_A          163 IIGDNVVREGEVIDNTSNDP------RVQGIRRFYELIAAEPRVSATALQTVGSKGYDGFIMAVVKE  223 (223)
T ss_dssp             EEEESCSGGGGGGCTTCCCH------HHHHHHHHHHHHHHCTTEEEEEEEEEETTEEEEEEEEEEC-
T ss_pred             EEEeCCCcCCcccCccccch------HHHHHHHHHHHHhhCCCeEEEEEeccCCCCCCeeEEEEEeC
Confidence            99999999998877654311      5566999999999999999999999     99999999985

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=100.00  E-value=2.4e-33  Score=228.08  Aligned_cols=214  Identities=21%  Similarity=0.305  Sum_probs=182.3

Q ss_pred             cCCCCcHHHHHHHHhccCCCCCChHHHHHHHHHhcCCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhh
Q 026461           12 KGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALT   91 (238)
Q Consensus        12 ~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~   91 (238)
                      +...+++.+.+|+.++.  +..++.+.+++.++....+  +.+.+..+.++..++...++++|||||||+|+++.+++..
T Consensus        17 ~~~~~~~~l~~yl~~~~--~~~~~~l~~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~   92 (232)
T 3ntv_A           17 RGSHMDDLNKKYLIDLH--QHQNSSIEVLREFAEVNEV--PIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASI   92 (232)
T ss_dssp             ----CHHHHHHHHHHHH--GGGCCGGGGHHHHHHHTTC--CCCCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHhC--CCCCHHHHHHHHHHHHcCC--CCcCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHh
Confidence            56667899999999864  3556677778887777655  4467999999999999889999999999999999999997


Q ss_pred             CCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHH-HHHhcccCCCCeeEEEEcCCccchHHHHHHHHhc
Q 026461           92 IPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD-QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL  170 (238)
Q Consensus        92 ~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~-~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~  170 (238)
                      .+ .++|+++|+++.+++.|++++...++.++++++.+|+.+.++ .+      .++||+||+++....+..+++.+.++
T Consensus        93 ~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~fD~V~~~~~~~~~~~~l~~~~~~  165 (232)
T 3ntv_A           93 SD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN------DKVYDMIFIDAAKAQSKKFFEIYTPL  165 (232)
T ss_dssp             CT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT------TSCEEEEEEETTSSSHHHHHHHHGGG
T ss_pred             CC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc------cCCccEEEEcCcHHHHHHHHHHHHHh
Confidence            66 789999999999999999999999988889999999998877 55      47999999999999999999999999


Q ss_pred             cCCCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEc
Q 026461          171 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  237 (238)
Q Consensus       171 L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~  237 (238)
                      |+|||+++++|++|.|.+.++....++..+. ....+++|++.+..+++++++++|+++|+.|++|+
T Consensus       166 LkpgG~lv~d~~~~~g~v~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~lp~~dG~~i~~k~  231 (232)
T 3ntv_A          166 LKHQGLVITDNVLYHGFVSDIGIVRSRNVRQ-MVKKVQDYNEWLIKQPGYTTNFLNIDDGLAISIKG  231 (232)
T ss_dssp             EEEEEEEEEECTTGGGGGGCGGGGGCHHHHH-HHHHHHHHHHHHHTCTTEEEEEECSTTCEEEEEEC
T ss_pred             cCCCeEEEEeeCCcCccccCcccccchhhhH-HHHHHHHHHHHHhcCCCeEEEEEEcCCceEEEEEC
Confidence            9999999999999999987764321222222 45679999999999999999999999999999986

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=100.00  E-value=4.9e-32  Score=219.29  Aligned_cols=213  Identities=38%  Similarity=0.624  Sum_probs=187.2

Q ss_pred             CcHHHHHHHHhccCCCCCChHHHHHHHHHhcCCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCC
Q 026461           16 QSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPED   95 (238)
Q Consensus        16 ~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~   95 (238)
                      ..+.+.+|+.+++  ...++.+.+++..+....++.+.+.+..++++..++...++++|||||||+|++++++++.+++.
T Consensus        17 ~~~~~~~y~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~   94 (229)
T 2avd_A           17 EDSRLWQYLLSRS--MREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPAD   94 (229)
T ss_dssp             TTSHHHHHHHHTT--CCCCHHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTT
T ss_pred             hHHHHHHHHHHcC--CCCCHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCC
Confidence            5678999999864  36678899999998887777788999999999999998899999999999999999999988767


Q ss_pred             CEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCe
Q 026461           96 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGG  175 (238)
Q Consensus        96 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG  175 (238)
                      ++|+++|+++.+++.+++++...++.++++++.+|+.+.++.+..++ ..++||+||+|.....+..+++.+.++|+|||
T Consensus        95 ~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~-~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG  173 (229)
T 2avd_A           95 GRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAG-EAGTFDVAVVDADKENCSAYYERCLQLLRPGG  173 (229)
T ss_dssp             CEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTT-CTTCEEEEEECSCSTTHHHHHHHHHHHEEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcC-CCCCccEEEECCCHHHHHHHHHHHHHHcCCCe
Confidence            89999999999999999999999988889999999988877663220 01689999999988888999999999999999


Q ss_pred             EEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEc
Q 026461          176 IAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  237 (238)
Q Consensus       176 ~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~  237 (238)
                      +++++|++|.|.+.++....     . ....+++|++.+..+++++++++|+++|+.+++|+
T Consensus       174 ~lv~~~~~~~g~~~~~~~~~-----~-~~~~~~~~~~~l~~~~~~~~~~lp~~dGl~~~~k~  229 (229)
T 2avd_A          174 ILAVLRVLWRGKVLQPPKGD-----V-AAECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI  229 (229)
T ss_dssp             EEEEECCSGGGGGGSCCTTC-----H-HHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             EEEEECCCcCCcccCcccCC-----h-HHHHHHHHHHHHhhCCCEEEEEEecCCceEEEEEC
Confidence            99999999999987764321     1 66779999999999999999999999999999985

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=100.00  E-value=3.1e-32  Score=223.74  Aligned_cols=209  Identities=25%  Similarity=0.441  Sum_probs=184.9

Q ss_pred             HHHHHHHHhccCCCCCChHHHHHHHHHhcCCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCE
Q 026461           18 EDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ   97 (238)
Q Consensus        18 ~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~   97 (238)
                      +.+.+|+.++  ++..++.+.++++.+.+.+++.+.+.+..++++..++...++++|||||||+|+++.++++.+++.++
T Consensus        13 ~~~~~y~~~~--~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~   90 (248)
T 3tfw_A           13 SAVDNYLIKA--LIPGDPVLDRVLENNHRAGLPAHDVAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQ   90 (248)
T ss_dssp             HHHHHHHHHH--HSCCCHHHHHHHHHHHHTTCBSCCCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCE
T ss_pred             HHHHHHHHhc--CCCCCHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCE
Confidence            5688999885  34677889999998888888887889999999999998889999999999999999999999876799


Q ss_pred             EEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEE
Q 026461           98 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA  177 (238)
Q Consensus        98 v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~l  177 (238)
                      |+++|+++.+++.|++++...++.++++++.+|+.+.++.+.    ..++||+||+|+....+..+++.+.++|+|||+|
T Consensus        91 v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~----~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~l  166 (248)
T 3tfw_A           91 LLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLG----ECPAFDLIFIDADKPNNPHYLRWALRYSRPGTLI  166 (248)
T ss_dssp             EEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCC----SCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEE
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcC----CCCCeEEEEECCchHHHHHHHHHHHHhcCCCeEE
Confidence            999999999999999999999998889999999998777551    1359999999999889999999999999999999


Q ss_pred             EEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEee-ecC----CeeEEEEEcC
Q 026461          178 VYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHV-ALG----DGITICRRIF  238 (238)
Q Consensus       178 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l-p~~----~G~~i~~~~~  238 (238)
                      +++|++|.|.+.++....+      ....+++|++.+..+|+|+++++ |++    ||+.|++++.
T Consensus       167 v~~~~~~~g~v~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~DG~~i~~~~~  226 (248)
T 3tfw_A          167 IGDNVVRDGEVVNPQSADE------RVQGVRQFIEMMGAEPRLTATALQTVGTKGWDGFTLAWVNA  226 (248)
T ss_dssp             EEECCSGGGGGGCTTCCCH------HHHHHHHHHHHHHHCTTEEEEEEEECSTTCSEEEEEEEECC
T ss_pred             EEeCCCcCCcccCccccch------HHHHHHHHHHHHhhCCCEEEEEeecCCCCCCCeeEEEEEeC
Confidence            9999999999887654211      56779999999999999999888 676    9999999874

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=100.00  E-value=3.5e-31  Score=216.03  Aligned_cols=221  Identities=38%  Similarity=0.559  Sum_probs=187.9

Q ss_pred             hhhcCCCCcHHHHHHHHhccCCCCCChHHHHHHHHHhcCCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHH
Q 026461            9 ASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLT   88 (238)
Q Consensus         9 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~l   88 (238)
                      |+.+.....+.+.+|+..++  +.+++.+.++++.+...+++.+.+.+..+.++..++...++++|||||||+|+.+.++
T Consensus         1 m~~~~~~~~~~~~~y~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~l   78 (239)
T 2hnk_A            1 MSRKNISLTESLEEYIFRNS--VREPDSFLKLRKETGTLAQANMQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCF   78 (239)
T ss_dssp             --CCSCCCCHHHHHHHHHTT--CCCCHHHHHHHHHHHTC---CCSCCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHH
T ss_pred             CCcccccchHHHHHHHHHcc--CCCCHHHHHHHHHHHHcCCcccccCHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHH
Confidence            34456777899999999854  4677889999999988888877899999999999998889999999999999999999


Q ss_pred             HhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhc--------ccCC--CCeeEEEEcCCcc
Q 026461           89 ALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY--------SENE--GSFDYAFVDADKD  158 (238)
Q Consensus        89 a~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~--------~~~~--~~fD~V~~d~~~~  158 (238)
                      +..+++.++|+++|+++.+++.|++++...++.++++++.+|+.+.++.+...        ++..  ++||+||++....
T Consensus        79 a~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~  158 (239)
T 2hnk_A           79 ASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKE  158 (239)
T ss_dssp             HHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGG
T ss_pred             HHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHH
Confidence            99987678999999999999999999999998778999999998876654210        0111  6899999999888


Q ss_pred             chHHHHHHHHhccCCCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEc
Q 026461          159 NYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  237 (238)
Q Consensus       159 ~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~  237 (238)
                      .+..+++.+.++|+|||++++++++|.|.+.++....     . ....++.|++.+..++++.+.++|+++|+.+++|+
T Consensus       159 ~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~  231 (239)
T 2hnk_A          159 NYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQE-----P-STVGIRKFNELVYNDSLVDVSLVPIADGVSLVRKR  231 (239)
T ss_dssp             GHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCC-----H-HHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHHHHHHHHHHcCCCeEEEEEccccCCcccCccccc-----h-HHHHHHHHHHHHhhCCCeEEEEEEcCCceEeeeeh
Confidence            8899999999999999999999999999887664321     1 56679999999999999999999999999999986

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.98  E-value=9.6e-31  Score=209.30  Aligned_cols=205  Identities=18%  Similarity=0.261  Sum_probs=173.0

Q ss_pred             CCcHHHHHHHHhccCCCCCChHHHHHHHHHhcCCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC
Q 026461           15 LQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE   94 (238)
Q Consensus        15 ~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~   94 (238)
                      ...+.+.+|+.++.  +.+++.+.+++..+.+.++  +.+.+..+.++..++...++++|||||||+|+++.+++..+++
T Consensus         5 ~~~~~~~~y~~~~~--~~~~~~~~~~~~~~~~~~~--p~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~   80 (210)
T 3c3p_A            5 IVDSRIGAYLDGLL--PEADPVVAAMEQIARERNI--PIVDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISI   80 (210)
T ss_dssp             CBCHHHHHHHHHTS--CSCCHHHHHHHHHHHHTTC--CCCCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCT
T ss_pred             hhHHHHHHHHHHhc--CCCCHHHHHHHHHHHHcCC--CCcCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCC
Confidence            35678999999964  4667889999998888755  4578999999999888888999999999999999999998876


Q ss_pred             CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCC
Q 026461           95 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG  174 (238)
Q Consensus        95 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~g  174 (238)
                      .++|+++|+++.+++.|++++...++.++++++++|+.+.++.+      .+ ||+||+|.....+..+++.+.++|+||
T Consensus        81 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~-fD~v~~~~~~~~~~~~l~~~~~~Lkpg  153 (210)
T 3c3p_A           81 SSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQ------RD-IDILFMDCDVFNGADVLERMNRCLAKN  153 (210)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTC------CS-EEEEEEETTTSCHHHHHHHHGGGEEEE
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccC------CC-CCEEEEcCChhhhHHHHHHHHHhcCCC
Confidence            78999999999999999999999888778999999998876543      35 999999998888999999999999999


Q ss_pred             eEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEc
Q 026461          175 GIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  237 (238)
Q Consensus       175 G~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~  237 (238)
                      |+++++|++|.|.+.++ . ...     ....+++|++.+..+|++.+..+|+++|+.+++|+
T Consensus       154 G~lv~~~~~~~g~~~~~-~-~~~-----~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~~~~~~  209 (210)
T 3c3p_A          154 ALLIAVNALRRGSVAES-H-EDP-----ETAALREFNHHLSRRRDFFTTIVPVGNGVLLGYRL  209 (210)
T ss_dssp             EEEEEESSSSCC-------------------CCCHHHHHHTTCTTEEEEEECSTTCEEEEEEC
T ss_pred             eEEEEECccccCcccCc-c-cch-----HHHHHHHHHHHHhhCCCeEEEEEecCCceEEEEeC
Confidence            99999999999887643 1 112     33348899999999999999999999999999986

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.97  E-value=4.7e-30  Score=206.97  Aligned_cols=201  Identities=21%  Similarity=0.358  Sum_probs=167.4

Q ss_pred             CCCcHHHHHHHHhccCCCCCChHHHHHHHHHhcCCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCC
Q 026461           14 LLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP   93 (238)
Q Consensus        14 ~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~   93 (238)
                      ..+++++++|+.+++....+...+..++.++....+. +.+.+..++++..++...++++|||||||+|.+++++++.++
T Consensus         3 ~~~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~   81 (221)
T 3u81_A            3 DTKEQRILRYVQQNAKPGDPQSVLEAIDTYCTQKEWA-MNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQ   81 (221)
T ss_dssp             CCHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHTCG-GGCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSC
T ss_pred             CcHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcCcC-cccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCC
Confidence            3456789999999874333334667788877765553 678899999999999988999999999999999999999887


Q ss_pred             CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHH---HHHHHhc
Q 026461           94 EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNY---HERLMKL  170 (238)
Q Consensus        94 ~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~---~~~~~~~  170 (238)
                      +.++|+++|+++.+++.|++++...++.++++++++|+.+.++.+..+ ...++||+||+|+....+...   ++.+ ++
T Consensus        82 ~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~-~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~  159 (221)
T 3u81_A           82 PGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKK-YDVDTLDMVFLDHWKDRYLPDTLLLEKC-GL  159 (221)
T ss_dssp             TTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTT-SCCCCCSEEEECSCGGGHHHHHHHHHHT-TC
T ss_pred             CCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHh-cCCCceEEEEEcCCcccchHHHHHHHhc-cc
Confidence            689999999999999999999999999888999999998877655210 012689999999987777654   4444 89


Q ss_pred             cCCCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeee-------cCCeeEEEEEc
Q 026461          171 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVA-------LGDGITICRRI  237 (238)
Q Consensus       171 L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp-------~~~G~~i~~~~  237 (238)
                      |+|||+++++|+.+++                    .++|++++.++|+|++..+|       +++|+.+++++
T Consensus       160 LkpgG~lv~~~~~~~~--------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~  213 (221)
T 3u81_A          160 LRKGTVLLADNVIVPG--------------------TPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQ  213 (221)
T ss_dssp             CCTTCEEEESCCCCCC--------------------CHHHHHHHHHCTTEEEEEEEEEETTTTEEEEEEEEEEC
T ss_pred             cCCCeEEEEeCCCCcc--------------------hHHHHHHHhhCCCceEEEcccccccCCCCCceEEEEEe
Confidence            9999999999999754                    45888899999999999998       89999999886

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.97  E-value=8.6e-29  Score=200.96  Aligned_cols=212  Identities=23%  Similarity=0.360  Sum_probs=165.4

Q ss_pred             CcHHHHHHHHhccCCCCCChHHHHHHHHHhcCCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCC
Q 026461           16 QSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPED   95 (238)
Q Consensus        16 ~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~   95 (238)
                      .++.+++|+.++.  +..++.+.+++..+...++  +.+.+....++..++...++.+|||||||+|+.+.++++.++ .
T Consensus         4 ~~~~~~~y~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~-~   78 (233)
T 2gpy_A            4 IEERLKHYLEKQI--PARDQYIEQMEREAHEQQV--PIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALP-E   78 (233)
T ss_dssp             -CHHHHHHHHTTC--CCCCHHHHHHHHHHHHTTC--CCCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCT-T
T ss_pred             cHHHHHHHHHHhC--CCCCHHHHHHHHHHHHcCC--CCcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCC-C
Confidence            5678999999853  4667889999888877654  457899999999999888899999999999999999999987 7


Q ss_pred             CEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCe
Q 026461           96 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGG  175 (238)
Q Consensus        96 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG  175 (238)
                      ++|+++|+++.+++.|++++...++.++++++.+|+.+.++...    ..++||+|+++.....+..+++.+.++|+|||
T Consensus        79 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~----~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG  154 (233)
T 2gpy_A           79 ATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLE----LYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGG  154 (233)
T ss_dssp             CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHT----TSCCEEEEEEEGGGSCHHHHHHHHGGGEEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcc----cCCCccEEEECCCHHHHHHHHHHHHHHcCCCe
Confidence            89999999999999999999999987789999999988766541    13689999999888888999999999999999


Q ss_pred             EEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEcC
Q 026461          176 IAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF  238 (238)
Q Consensus       176 ~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~~  238 (238)
                      +++++|++|.|.+..++. ..+..+. ....+++|+..+..++.+.+.++|+++|+.+++|++
T Consensus       155 ~lv~~~~~~~g~~~~~~~-~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~p~~dG~~~~~~~~  215 (233)
T 2gpy_A          155 LILSDNVLFRGLVAETDI-EHKRHKQ-LATKIDTYNQWLLEHPQYDTRIFPVGDGIAISIKRE  215 (233)
T ss_dssp             EEEEETTTC---------------------------CTTTTCTTEEEEEECSTTCEEEEEEC-
T ss_pred             EEEEEcCCcCCccCCccc-cccchhH-HHHHHHHHHHHHHhCCCeEEEEEEcCCeEEEEEEcC
Confidence            999999999987655432 1111111 344578888999999999999999999999999863

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.83  E-value=5.2e-20  Score=145.32  Aligned_cols=154  Identities=12%  Similarity=0.055  Sum_probs=118.0

Q ss_pred             CCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCC--CCcE
Q 026461           47 HPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--DHKI  124 (238)
Q Consensus        47 ~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--~~~v  124 (238)
                      -.++.+.+.+..+++|...  ..++++||||||  |+||+++|+. + +++|++||.++++.+.|++++++.|+  .+++
T Consensus         9 ~~~P~~~v~~~~~~~L~~~--l~~a~~VLEiGt--GySTl~lA~~-~-~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I   82 (202)
T 3cvo_A            9 QMRPELTMPPAEAEALRMA--YEEAEVILEYGS--GGSTVVAAEL-P-GKHVTSVESDRAWARMMKAWLAANPPAEGTEV   82 (202)
T ss_dssp             CCCCCCCSCHHHHHHHHHH--HHHCSEEEEESC--SHHHHHHHTS-T-TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEE
T ss_pred             CCCCCccCCHHHHHHHHHH--hhCCCEEEEECc--hHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCce
Confidence            3456677899999999884  457899999998  6999999984 4 79999999999999999999999998  7899


Q ss_pred             EEEecchhHH--------------HHHHHhc---ccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccccCcc
Q 026461          125 NFIESEALSV--------------LDQLLKY---SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGT  187 (238)
Q Consensus       125 ~~~~~d~~~~--------------l~~~~~~---~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~  187 (238)
                      +++.+|+.+.              ++.+..+   ....++||+||+|+.+.  ..++..+.++|+|||+|++||+.+++.
T Consensus        83 ~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~--~~~~~~~l~~l~~GG~Iv~DNv~~r~~  160 (202)
T 3cvo_A           83 NIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFR--VGCALATAFSITRPVTLLFDDYSQRRW  160 (202)
T ss_dssp             EEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSH--HHHHHHHHHHCSSCEEEEETTGGGCSS
T ss_pred             EEEEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCc--hhHHHHHHHhcCCCeEEEEeCCcCCcc
Confidence            9999997543              3332210   01137899999999755  366777889999999999999876543


Q ss_pred             ccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEe
Q 026461          188 VAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSH  224 (238)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  224 (238)
                      +..                +.+|.+.+...+++-...
T Consensus       161 y~~----------------v~~~~~~~~~~~~~a~f~  181 (202)
T 3cvo_A          161 QHQ----------------VEEFLGAPLMIGRLAAFQ  181 (202)
T ss_dssp             GGG----------------GHHHHCCCEEETTEEEEE
T ss_pred             hHH----------------HHHHHhHHhhcCceEEEE
Confidence            211                667766666666654443

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=99.79  E-value=1.3e-18  Score=144.26  Aligned_cols=159  Identities=12%  Similarity=0.092  Sum_probs=125.6

Q ss_pred             CcHhHHHHHHHHHhh----cCCCEEEEEcccccHHHHHHHhhCC----CCCEEEEEeCCc--------------------
Q 026461           54 TAPDAGQLMAMLLRL----VNAKKTIEIGVFTGYSLLLTALTIP----EDGQITAIDVNR--------------------  105 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~----~~~~~vLeiG~G~G~~t~~la~~~~----~~~~v~~iD~~~--------------------  105 (238)
                      +......+|+.++..    ..|+.||||||+.|+++++++..++    +..+|+++|..+                    
T Consensus        86 v~~~r~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~  165 (282)
T 2wk1_A           86 IGIKRLENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHR  165 (282)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGG
T ss_pred             cCHHHHHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCccccccccccccccccc
Confidence            556677777777664    4589999999999999999998764    368899999642                    


Q ss_pred             ------hhHHHHHHHHHHcCCC-CcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCc-cchHHHHHHHHhccCCCeEE
Q 026461          106 ------ETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-DNYCNYHERLMKLLKVGGIA  177 (238)
Q Consensus       106 ------~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~-~~~~~~~~~~~~~L~~gG~l  177 (238)
                            ..++.+++++++.|+. ++++++.|++.+.++.+.     .++||+||+|+.. ..+..+++.++++|+|||+|
T Consensus       166 ~~~~~~~~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~-----~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiI  240 (282)
T 2wk1_A          166 RNSVLAVSEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAP-----IDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYV  240 (282)
T ss_dssp             GHHHHCCCHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTCC-----CCCEEEEEECCCSHHHHHHHHHHHGGGEEEEEEE
T ss_pred             ccccchhHHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhCC-----CCCEEEEEEcCCccccHHHHHHHHHhhcCCCEEE
Confidence                  1467799999999994 889999999999887651     4689999999986 45678899999999999999


Q ss_pred             EEecccc-CccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEc
Q 026461          178 VYDNTLW-GGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  237 (238)
Q Consensus       178 v~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~  237 (238)
                      ++||+.| +|                ..+++++|++.    .++...+.+++.+..+.+|.
T Consensus       241 v~DD~~~~~G----------------~~~Av~Ef~~~----~~i~~~i~~~~~~~v~~rk~  281 (282)
T 2wk1_A          241 IVDDYMMCPP----------------CKDAVDEYRAK----FDIADELITIDRDGVYWQRT  281 (282)
T ss_dssp             EESSCTTCHH----------------HHHHHHHHHHH----TTCCSCCEECSSSCEEEECC
T ss_pred             EEcCCCCCHH----------------HHHHHHHHHHh----cCCceEEEEecCEEEEEEeC
Confidence            9999864 22                55556666544    34666788888777677664

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.76  E-value=5.4e-18  Score=143.22  Aligned_cols=150  Identities=18%  Similarity=0.226  Sum_probs=112.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc--CC-CCcEEEEecchhHHHHHHHhcccC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GV-DHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      ..++++|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...  ++ .++++++.+|+.+.++..      
T Consensus       106 ~~~~~~VLdIG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~------  178 (314)
T 2b2c_A          106 HPDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH------  178 (314)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC------
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhc------
Confidence            45678999999999999999998754 789999999999999999998654  33 468999999999877652      


Q ss_pred             CCCeeEEEEcCCc------cch-HHHHHHHHhccCCCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcC
Q 026461          145 EGSFDYAFVDADK------DNY-CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADD  217 (238)
Q Consensus       145 ~~~fD~V~~d~~~------~~~-~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  217 (238)
                      .++||+|++|...      ..+ ..+++.+.++|+|||+++++....    ...        .. ....+.++++.+..+
T Consensus       179 ~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~----~~~--------~~-~~~~~~~~l~~vF~~  245 (314)
T 2b2c_A          179 KNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESV----WLH--------LP-LIAHLVAFNRKIFPA  245 (314)
T ss_dssp             TTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCCT----TTC--------HH-HHHHHHHHHHHHCSE
T ss_pred             CCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCc----ccC--------HH-HHHHHHHHHHHHCCc
Confidence            5789999998632      112 688999999999999999975211    000        00 344466777777777


Q ss_pred             CCeeEEeeec---CC-eeEEEEEc
Q 026461          218 PRVQLSHVAL---GD-GITICRRI  237 (238)
Q Consensus       218 ~~~~~~~lp~---~~-G~~i~~~~  237 (238)
                      ..+..+.+|.   |+ |+.++.|+
T Consensus       246 v~~~~~~iP~~~~g~~g~~~ask~  269 (314)
T 2b2c_A          246 VTYAQSIVSTYPSGSMGYLICAKN  269 (314)
T ss_dssp             EEEEEEECTTSGGGEEEEEEEESS
T ss_pred             ceEEEEEecCcCCCceEEEEEeCC
Confidence            7777787886   45 88888764

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.74  E-value=1.3e-17  Score=140.34  Aligned_cols=149  Identities=15%  Similarity=0.218  Sum_probs=115.9

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHH--cCC-CCcEEEEecchhHHHHHHHhcccC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK--AGV-DHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      ..++++|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++..  .++ .++++++.+|+.+.++..      
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~------  165 (304)
T 2o07_A           93 HPNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN------  165 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC------
T ss_pred             CCCCCEEEEECCCchHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhC------
Confidence            35678999999999999999998754 68999999999999999999875  344 468999999998876643      


Q ss_pred             CCCeeEEEEcCCcc-------chHHHHHHHHhccCCCeEEEEecc-ccCccccCCCCCCCCCcccchHHHHHHHHHHhhc
Q 026461          145 EGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDNT-LWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD  216 (238)
Q Consensus       145 ~~~fD~V~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  216 (238)
                      .++||+|++|....       ....+++.+.++|+|||+++++.. .|...             . ....+.++++.+..
T Consensus       166 ~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~-------------~-~~~~~~~~l~~~f~  231 (304)
T 2o07_A          166 QDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHL-------------D-LIKEMRQFCQSLFP  231 (304)
T ss_dssp             SSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCH-------------H-HHHHHHHHHHHHCS
T ss_pred             CCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccch-------------H-HHHHHHHHHHHhCC
Confidence            57899999987532       235689999999999999999863 23210             0 44557788888888


Q ss_pred             CCCeeEEeeec---C-CeeEEEEEc
Q 026461          217 DPRVQLSHVAL---G-DGITICRRI  237 (238)
Q Consensus       217 ~~~~~~~~lp~---~-~G~~i~~~~  237 (238)
                      +.++....+|.   + .|+.++.+.
T Consensus       232 ~v~~~~~~vP~~~~g~~g~~~as~~  256 (304)
T 2o07_A          232 VVAYAYCTIPTYPSGQIGFMLCSKN  256 (304)
T ss_dssp             EEEEEEEECTTSGGGEEEEEEEESS
T ss_pred             CceeEEEEeccccCcceEEEEEeCC
Confidence            87787777886   3 588888753

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.72  E-value=1.4e-16  Score=126.55  Aligned_cols=118  Identities=17%  Similarity=0.139  Sum_probs=98.2

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      ..+.....+...+...++.+|||+|||+|..+..++..   ..+|+++|+++.+++.|+++++..++.++++++.+|+.+
T Consensus        39 ~~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~  115 (204)
T 3njr_A           39 TKSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPA  115 (204)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTG
T ss_pred             CcHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhh
Confidence            44555555555666677789999999999999999986   579999999999999999999999987689999999988


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      .++.       .++||+|+++... ... +++.+.+.|+|||.+++....
T Consensus       116 ~~~~-------~~~~D~v~~~~~~-~~~-~l~~~~~~LkpgG~lv~~~~~  156 (204)
T 3njr_A          116 ALAD-------LPLPEAVFIGGGG-SQA-LYDRLWEWLAPGTRIVANAVT  156 (204)
T ss_dssp             GGTT-------SCCCSEEEECSCC-CHH-HHHHHHHHSCTTCEEEEEECS
T ss_pred             hccc-------CCCCCEEEECCcc-cHH-HHHHHHHhcCCCcEEEEEecC
Confidence            5443       3689999998744 344 899999999999999987644

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.72  E-value=1.2e-17  Score=135.70  Aligned_cols=116  Identities=21%  Similarity=0.309  Sum_probs=96.9

Q ss_pred             HhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhh---CCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           56 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALT---IPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~---~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      +....++..++...++.+|||||||+|+++.++++.   +.+.++|+++|+++.+++.|+      +..++++++++|+.
T Consensus        67 p~~~~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~~~v~~~~gD~~  140 (236)
T 2bm8_A           67 PDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGDCS  140 (236)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECCSS
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccCCceEEEECcch
Confidence            778888888887778899999999999999999987   344789999999999988887      22367999999997


Q ss_pred             HH--HHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHh-ccCCCeEEEEecc
Q 026461          133 SV--LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK-LLKVGGIAVYDNT  182 (238)
Q Consensus       133 ~~--l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~-~L~~gG~lv~~~~  182 (238)
                      +.  ++..     ...+||+|++++.+..+..++..+.+ +|+|||+++++++
T Consensus       141 ~~~~l~~~-----~~~~fD~I~~d~~~~~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          141 DLTTFEHL-----REMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             CSGGGGGG-----SSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             hHHHHHhh-----ccCCCCEEEECCchHhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            74  3332     12479999999877778889999996 9999999999886

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.72  E-value=1.4e-16  Score=140.74  Aligned_cols=124  Identities=15%  Similarity=0.206  Sum_probs=103.3

Q ss_pred             cCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           53 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      .++.....++..++...++.+|||+|||+|..|..+++.++..++|+++|+++.+++.+++++.+.|+.  +.++++|+.
T Consensus        84 ~vQd~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~  161 (464)
T 3m6w_A           84 YIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPR  161 (464)
T ss_dssp             EECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHH
T ss_pred             EEECHHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHH
Confidence            345555667777777777889999999999999999999876789999999999999999999999985  999999998


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcCCccc-------------------------hHHHHHHHHhccCCCeEEEEecccc
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      +.....      .++||+|++|+++..                         ...+++.+.++|+|||.|+...+.+
T Consensus       162 ~l~~~~------~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~  232 (464)
T 3m6w_A          162 ALAEAF------GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF  232 (464)
T ss_dssp             HHHHHH------CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             Hhhhhc------cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence            875444      579999999865421                         1567888889999999999877654

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.72  E-value=6.2e-17  Score=128.18  Aligned_cols=121  Identities=19%  Similarity=0.193  Sum_probs=101.8

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      ........+...+...++.+|||+|||+|..+..++...+ ..+|+++|+++.+++.+++++...++ ++++++.+|+.+
T Consensus        24 ~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~  101 (204)
T 3e05_A           24 TKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMP-NGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPE  101 (204)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCT-TSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTT
T ss_pred             ChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhh
Confidence            4455544454555666778999999999999999999876 78999999999999999999999888 679999999876


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      .++.       .++||+|+++........+++.+.+.|+|||.+++....
T Consensus       102 ~~~~-------~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  144 (204)
T 3e05_A          102 GLDD-------LPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAVT  144 (204)
T ss_dssp             TCTT-------SCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred             hhhc-------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEecc
Confidence            5442       378999999987778889999999999999999997544

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.72  E-value=2.3e-16  Score=123.47  Aligned_cols=121  Identities=10%  Similarity=0.075  Sum_probs=96.4

Q ss_pred             cHhHHHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           55 APDAGQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        55 ~~~~~~~l~~l~~~--~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      ......++..+...  .++.+|||+|||+|..++.++.. + ..+|+++|+++.+++.+++++...++ ++++++++|+.
T Consensus        27 ~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~  103 (189)
T 3p9n_A           27 DRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSR-G-AASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVA  103 (189)
T ss_dssp             HHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHH
T ss_pred             HHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHC-C-CCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHH
Confidence            33344455544443  57789999999999999988874 2 56899999999999999999999988 67999999998


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcCCccc----hHHHHHHHHh--ccCCCeEEEEeccc
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDADKDN----YCNYHERLMK--LLKVGGIAVYDNTL  183 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~~~~~----~~~~~~~~~~--~L~~gG~lv~~~~~  183 (238)
                      +..+.+     ..++||+|+++.+...    ....++.+.+  +|+|||++++....
T Consensus       104 ~~~~~~-----~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~  155 (189)
T 3p9n_A          104 AVVAAG-----TTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERAT  155 (189)
T ss_dssp             HHHHHC-----CSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred             HHHhhc-----cCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence            886653     1479999999865433    5677888888  99999999997544

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.72  E-value=2.8e-16  Score=130.35  Aligned_cols=127  Identities=20%  Similarity=0.190  Sum_probs=101.8

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      ++.....++..++...++.+|||+|||+|..+..+++.++..++|+++|+++.+++.+++++...|+. +++++++|+.+
T Consensus        67 ~qd~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~  145 (274)
T 3ajd_A           67 PQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRK  145 (274)
T ss_dssp             ECCSGGGHHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHH
T ss_pred             EeCHHHHHHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHh
Confidence            34445556666666667789999999999999999998874589999999999999999999999885 69999999987


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCcc---------------------chHHHHHHHHhccCCCeEEEEecccc
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKD---------------------NYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~---------------------~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      ....+...   .++||+|++|.+..                     ....+++.+.++|+|||.+++..+..
T Consensus       146 ~~~~~~~~---~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~  214 (274)
T 3ajd_A          146 YKDYLLKN---EIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM  214 (274)
T ss_dssp             HHHHHHHT---TCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             cchhhhhc---cccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence            65432111   46899999995432                     23678888899999999999876543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.72  E-value=8.8e-17  Score=133.77  Aligned_cols=108  Identities=15%  Similarity=0.179  Sum_probs=92.4

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhccc
Q 026461           64 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE  143 (238)
Q Consensus        64 ~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~  143 (238)
                      .++...++.+|||||||+|..+..++...+ +++|+++|+++++++.|+++++..|+ ++++++++|+.++ +       
T Consensus       116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~-ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l-~-------  185 (298)
T 3fpf_A          116 ALGRFRRGERAVFIGGGPLPLTGILLSHVY-GMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVI-D-------  185 (298)
T ss_dssp             HHTTCCTTCEEEEECCCSSCHHHHHHHHTT-CCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGG-G-------
T ss_pred             HHcCCCCcCEEEEECCCccHHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhC-C-------
Confidence            356677889999999999876644443444 78999999999999999999999998 7899999999875 2       


Q ss_pred             CCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461          144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                       .++||+||+++.......+++.+.+.|||||++++.+.
T Consensus       186 -d~~FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          186 -GLEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             -GCCCSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             -CCCcCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence             37999999988777888999999999999999999874

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.71  E-value=1.4e-16  Score=134.78  Aligned_cols=150  Identities=13%  Similarity=0.133  Sum_probs=109.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHH--cC-C-CCcEEEEecchhHHHHHHHhccc
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK--AG-V-DHKINFIESEALSVLDQLLKYSE  143 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~--~~-~-~~~v~~~~~d~~~~l~~~~~~~~  143 (238)
                      ..++++|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++..  .+ + .++++++.+|+.+.++..     
T Consensus        75 ~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-----  148 (314)
T 1uir_A           75 HPEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT-----  148 (314)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC-----
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc-----
Confidence            45778999999999999999998754 68999999999999999999865  22 2 368999999999876653     


Q ss_pred             CCCCeeEEEEcCCccc----------hHHHHHHHHhccCCCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHH
Q 026461          144 NEGSFDYAFVDADKDN----------YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRS  213 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~~----------~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (238)
                       .++||+|++|...+.          ...+++.+.++|+|||++++.....    ....   .+     ....+.+.++.
T Consensus       149 -~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~----~~~~---~~-----~~~~~~~~l~~  215 (314)
T 1uir_A          149 -EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMI----LLTH---HR-----VHPVVHRTVRE  215 (314)
T ss_dssp             -CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEE----CC------C-----HHHHHHHHHHT
T ss_pred             -CCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCc----cccC---HH-----HHHHHHHHHHH
Confidence             578999999965433          4789999999999999999863211    0000   01     33334455555


Q ss_pred             hhcCCCeeEEeeecCCe---eEEEEE
Q 026461          214 LADDPRVQLSHVALGDG---ITICRR  236 (238)
Q Consensus       214 l~~~~~~~~~~lp~~~G---~~i~~~  236 (238)
                      +..+..+....+|..+|   +.++.|
T Consensus       216 ~F~~v~~~~~~vP~~~g~~~~~~as~  241 (314)
T 1uir_A          216 AFRYVRSYKNHIPGFFLNFGFLLASD  241 (314)
T ss_dssp             TCSEEEEEEEEEGGGTEEEEEEEEES
T ss_pred             HCCceEEEEEecCCCCCeEEEEEEEC
Confidence            54444556667787665   566665

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.71  E-value=1e-16  Score=124.04  Aligned_cols=120  Identities=18%  Similarity=0.224  Sum_probs=95.5

Q ss_pred             HhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHH
Q 026461           56 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL  135 (238)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l  135 (238)
                      .....++..+....++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.+++++...++.++++++.+|+.+.+
T Consensus        17 ~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   94 (177)
T 2esr_A           17 KVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-G-MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAI   94 (177)
T ss_dssp             -CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-T-CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhH
Confidence            333444444433456789999999999999999986 3 57999999999999999999999888778999999998876


Q ss_pred             HHHHhcccCCCCeeEEEEcCCc--cchHHHHHHHH--hccCCCeEEEEeccc
Q 026461          136 DQLLKYSENEGSFDYAFVDADK--DNYCNYHERLM--KLLKVGGIAVYDNTL  183 (238)
Q Consensus       136 ~~~~~~~~~~~~fD~V~~d~~~--~~~~~~~~~~~--~~L~~gG~lv~~~~~  183 (238)
                      +..      .++||+|+++.+.  ......++.+.  ++|+|||++++....
T Consensus        95 ~~~------~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~  140 (177)
T 2esr_A           95 DCL------TGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDK  140 (177)
T ss_dssp             HHB------CSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             Hhh------cCCCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence            654      4679999998653  34566777776  899999999987543

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.71  E-value=2.4e-16  Score=139.02  Aligned_cols=125  Identities=15%  Similarity=0.176  Sum_probs=104.0

Q ss_pred             cCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           53 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      .++.....++..++...++.+|||+|||+|..|+++++.++..++|+++|+++.+++.+++++.+.|+. ++.+.++|+.
T Consensus        88 ~vQd~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~  166 (456)
T 3m4x_A           88 YSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPA  166 (456)
T ss_dssp             EECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHH
T ss_pred             EEECHHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHH
Confidence            345566677777777777889999999999999999998876789999999999999999999999986 5999999998


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcCCccc-------------------------hHHHHHHHHhccCCCeEEEEecccc
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      +..+..      .++||+|++|++++.                         ...+++.+.++|+|||.|+...+..
T Consensus       167 ~l~~~~------~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  237 (456)
T 3m4x_A          167 ELVPHF------SGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF  237 (456)
T ss_dssp             HHHHHH------TTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             Hhhhhc------cccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence            875544      579999999976321                         1266788889999999999877654

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.70  E-value=2.7e-16  Score=125.70  Aligned_cols=169  Identities=18%  Similarity=0.111  Sum_probs=116.2

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCC----cEEEEec
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH----KINFIES  129 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~----~v~~~~~  129 (238)
                      +.+...+.+..++...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.+++++...++..    +++++.+
T Consensus        13 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~   91 (219)
T 3jwg_A           13 LNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKS-FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQS   91 (219)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTT-CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEEC
T ss_pred             chHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeC
Confidence            3444555555566667889999999999999999998765 5799999999999999999998777654    7999999


Q ss_pred             chhHHHHHHHhcccCCCCeeEEEEcCCccc-----hHHHHHHHHhccCCCeEEEEeccccCccccCCCC--C--CCCCcc
Q 026461          130 EALSVLDQLLKYSENEGSFDYAFVDADKDN-----YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEE--Q--VPDHFR  200 (238)
Q Consensus       130 d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~--~--~~~~~~  200 (238)
                      |+.....       ..++||+|++......     ...+++.+.+.|+|||+++.......+.......  .  ...+..
T Consensus        92 d~~~~~~-------~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (219)
T 3jwg_A           92 SLVYRDK-------RFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRF  164 (219)
T ss_dssp             CSSSCCG-------GGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTT
T ss_pred             ccccccc-------ccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCcee
Confidence            9844311       1479999998754332     3578899999999999877754332211110000  0  011111


Q ss_pred             cchHHHHHHHHHHhhcCCCeeEEeeecCCe
Q 026461          201 GSSRQAILDLNRSLADDPRVQLSHVALGDG  230 (238)
Q Consensus       201 ~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G  230 (238)
                      .-....++.+.+.+....+|++...+++++
T Consensus       165 ~~~~~~l~~~~~~l~~~~Gf~v~~~~~g~~  194 (219)
T 3jwg_A          165 EWTRKEFQTWAVKVAEKYGYSVRFLQIGEI  194 (219)
T ss_dssp             SBCHHHHHHHHHHHHHHHTEEEEEEEESCC
T ss_pred             eecHHHHHHHHHHHHHHCCcEEEEEecCCc
Confidence            113344666666777777898888876644

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.70  E-value=2.7e-16  Score=125.62  Aligned_cols=168  Identities=15%  Similarity=0.147  Sum_probs=117.3

Q ss_pred             cHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCC----cEEEEecc
Q 026461           55 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH----KINFIESE  130 (238)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~----~v~~~~~d  130 (238)
                      .+...+.+..++...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.+++++...++..    +++++++|
T Consensus        14 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d   92 (217)
T 3jwh_A           14 NQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSF-FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGA   92 (217)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTT-CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECC
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCC-CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCC
Confidence            444555555566667888999999999999999998655 5799999999999999999998777753    79999999


Q ss_pred             hhHHHHHHHhcccCCCCeeEEEEcCCcc-----chHHHHHHHHhccCCCeEEEEeccccCccccC--CCCC--CCCCccc
Q 026461          131 ALSVLDQLLKYSENEGSFDYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTLWGGTVAV--PEEQ--VPDHFRG  201 (238)
Q Consensus       131 ~~~~l~~~~~~~~~~~~fD~V~~d~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~--~~~~--~~~~~~~  201 (238)
                      +.....       ..++||+|++.....     ....+++.+.+.|+|||++++......+....  +...  ...+...
T Consensus        93 ~~~~~~-------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (217)
T 3jwh_A           93 LTYQDK-------RFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFE  165 (217)
T ss_dssp             TTSCCG-------GGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSC
T ss_pred             cccccc-------cCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccc
Confidence            743311       147999999876433     33678899999999999888754321111110  0000  0111111


Q ss_pred             chHHHHHHHHHHhhcCCCeeEEeeecCCe
Q 026461          202 SSRQAILDLNRSLADDPRVQLSHVALGDG  230 (238)
Q Consensus       202 ~~~~~~~~~~~~l~~~~~~~~~~lp~~~G  230 (238)
                      -....++++.+.+....+|++...++++.
T Consensus       166 ~~~~~l~~~~~~~~~~~Gf~v~~~~~g~~  194 (217)
T 3jwh_A          166 WTRSQFQNWANKITERFAYNVQFQPIGEA  194 (217)
T ss_dssp             BCHHHHHHHHHHHHHHSSEEEEECCCSCC
T ss_pred             cCHHHHHHHHHHHHHHcCceEEEEecCCc
Confidence            13445777777788888999998877754

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.70  E-value=1.3e-16  Score=123.10  Aligned_cols=115  Identities=19%  Similarity=0.172  Sum_probs=94.3

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHH
Q 026461           60 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL  139 (238)
Q Consensus        60 ~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~  139 (238)
                      ..+...+...++.+|||+|||+|..+..++..++ ..+|+++|+++.+++.+++++...++..++ ++.+|+.+.++.. 
T Consensus        15 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~-   91 (178)
T 3hm2_A           15 ALAISALAPKPHETLWDIGGGSGSIAIEWLRSTP-QTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDV-   91 (178)
T ss_dssp             HHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSS-SEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGC-
T ss_pred             HHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCC-CCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhcc-
Confidence            3333344555677999999999999999999876 789999999999999999999999887678 8889987654431 


Q ss_pred             hcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          140 KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       140 ~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                           .++||+|++...... ..+++.+.+.|+|||.+++....
T Consensus        92 -----~~~~D~i~~~~~~~~-~~~l~~~~~~L~~gG~l~~~~~~  129 (178)
T 3hm2_A           92 -----PDNPDVIFIGGGLTA-PGVFAAAWKRLPVGGRLVANAVT  129 (178)
T ss_dssp             -----CSCCSEEEECC-TTC-TTHHHHHHHTCCTTCEEEEEECS
T ss_pred             -----CCCCCEEEECCcccH-HHHHHHHHHhcCCCCEEEEEeec
Confidence                 379999999875544 77899999999999999987654

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.70  E-value=2.7e-16  Score=130.95  Aligned_cols=147  Identities=12%  Similarity=0.092  Sum_probs=108.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc--CC--------CCcEEEEecchhHHHHH
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GV--------DHKINFIESEALSVLDQ  137 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~--------~~~v~~~~~d~~~~l~~  137 (238)
                      ..++++|||||||+|..+..+++. + ..+|+++|+++.+++.|++++ ..  ++        .++++++.+|+.+.++.
T Consensus        73 ~~~~~~VLdiG~G~G~~~~~l~~~-~-~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~  149 (281)
T 1mjf_A           73 HPKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN  149 (281)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc
Confidence            457789999999999999999987 5 789999999999999999998 44  32        46799999999887654


Q ss_pred             HHhcccCCCCeeEEEEcCCc-----cc--hHHHHHHHHhccCCCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHH
Q 026461          138 LLKYSENEGSFDYAFVDADK-----DN--YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDL  210 (238)
Q Consensus       138 ~~~~~~~~~~fD~V~~d~~~-----~~--~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  210 (238)
                             .++||+|++|...     ..  ...+++.+.+.|+|||+++++....    ....        . ....+.+.
T Consensus       150 -------~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~----~~~~--------~-~~~~~~~~  209 (281)
T 1mjf_A          150 -------NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSV----YLFT--------D-ELISAYKE  209 (281)
T ss_dssp             -------CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEET----TTSH--------H-HHHHHHHH
T ss_pred             -------cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCc----ccCH--------H-HHHHHHHH
Confidence                   2789999999752     11  3788999999999999999973211    0000        0 23334555


Q ss_pred             HHHhhcCCCeeEEeeecCCe---eEEEEEc
Q 026461          211 NRSLADDPRVQLSHVALGDG---ITICRRI  237 (238)
Q Consensus       211 ~~~l~~~~~~~~~~lp~~~G---~~i~~~~  237 (238)
                      .+.+..+..+....+|..+|   +.++.|.
T Consensus       210 l~~~f~~v~~~~~~vP~~~g~~~~~~as~~  239 (281)
T 1mjf_A          210 MKKVFDRVYYYSFPVIGYASPWAFLVGVKG  239 (281)
T ss_dssp             HHHHCSEEEEEEECCTTSSSSEEEEEEEES
T ss_pred             HHHHCCceEEEEEecCCCCceEEEEEeeCC
Confidence            55555555556667787655   6777764

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.69  E-value=2e-15  Score=122.64  Aligned_cols=105  Identities=15%  Similarity=0.184  Sum_probs=88.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .++.+|||||||+|..++.++...+ ..+|+++|+++.+++.+++++...++. +++++++|+.+.....    ...++|
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~----~~~~~f  142 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRK----DVRESY  142 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCT----TTTTCE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhcccc----cccCCc
Confidence            4678999999999999999998655 789999999999999999999998885 4999999987752100    013689


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      |+|++.. ......+++.+.++|+|||.+++.
T Consensus       143 D~V~~~~-~~~~~~~l~~~~~~LkpgG~l~~~  173 (240)
T 1xdz_A          143 DIVTARA-VARLSVLSELCLPLVKKNGLFVAL  173 (240)
T ss_dssp             EEEEEEC-CSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cEEEEec-cCCHHHHHHHHHHhcCCCCEEEEE
Confidence            9999987 456788999999999999999875

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.69  E-value=4.1e-16  Score=121.27  Aligned_cols=111  Identities=14%  Similarity=0.142  Sum_probs=90.7

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.|++++...++.++++++++|+.+.++.+...   .++
T Consensus        42 ~~~~~~vLD~GcG~G~~~~~~~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~~  116 (187)
T 2fhp_A           42 YFDGGMALDLYSGSGGLAIEAVSR-G-MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEE---KLQ  116 (187)
T ss_dssp             CCSSCEEEETTCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHT---TCC
T ss_pred             hcCCCCEEEeCCccCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhc---CCC
Confidence            346789999999999999998873 2 57999999999999999999999888778999999998876644211   478


Q ss_pred             eeEEEEcCC--ccchHHHHHHH--HhccCCCeEEEEeccc
Q 026461          148 FDYAFVDAD--KDNYCNYHERL--MKLLKVGGIAVYDNTL  183 (238)
Q Consensus       148 fD~V~~d~~--~~~~~~~~~~~--~~~L~~gG~lv~~~~~  183 (238)
                      ||+|+++.+  .......++.+  .++|+|||++++....
T Consensus       117 fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~  156 (187)
T 2fhp_A          117 FDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDK  156 (187)
T ss_dssp             EEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             CCEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence            999999875  23456677777  7889999999986433

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.69  E-value=4.9e-16  Score=128.07  Aligned_cols=119  Identities=15%  Similarity=0.193  Sum_probs=95.2

Q ss_pred             HhHHHHHHHHHh--hcCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           56 PDAGQLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        56 ~~~~~~l~~l~~--~~~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      ....+++..++.  ..++.+|||+|||+|..+..+++.++ ++.+|+|+|+++.+++.|++++...+...+++++++|+.
T Consensus        54 ~~~~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~  133 (261)
T 4gek_A           54 SNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIR  133 (261)
T ss_dssp             HHHHHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTT
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccc
Confidence            334445555544  34667999999999999999999874 356999999999999999999999888888999999987


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcCCcc-----chHHHHHHHHhccCCCeEEEEeccc
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ++         +.++||+|++....+     ....+++++.+.|+|||++++.+..
T Consensus       134 ~~---------~~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~  180 (261)
T 4gek_A          134 DI---------AIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF  180 (261)
T ss_dssp             TC---------CCCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             cc---------cccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEecc
Confidence            65         136799999875432     2346789999999999999987654

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.69  E-value=5.6e-16  Score=131.09  Aligned_cols=123  Identities=21%  Similarity=0.246  Sum_probs=101.1

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      ++.....++..++...++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.+++++...|+. +++++++|+.+
T Consensus       102 ~qd~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~  180 (315)
T 1ixk_A          102 IQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLH  180 (315)
T ss_dssp             ECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGG
T ss_pred             EeCHHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhh
Confidence            45556666667777777889999999999999999998875789999999999999999999999985 59999999987


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCccc-------------------------hHHHHHHHHhccCCCeEEEEecccc
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      ... .      .++||+|++|.+...                         ...+++.+.++|+|||.+++..+..
T Consensus       181 ~~~-~------~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~  249 (315)
T 1ixk_A          181 IGE-L------NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  249 (315)
T ss_dssp             GGG-G------CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             ccc-c------cccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            633 2      468999999864321                         1477888899999999999977653

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.67  E-value=1.4e-15  Score=118.38  Aligned_cols=120  Identities=21%  Similarity=0.213  Sum_probs=100.8

Q ss_pred             cCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           53 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      .........+...+...++.+|||+|||+|..+..++...   .+|+++|+++.+++.+++++...+...++++..+|+.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   92 (192)
T 1l3i_A           16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP   92 (192)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHH
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHH
Confidence            3445555666666667778899999999999999999865   6999999999999999999999888678999999987


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      +.++.       .++||+|+++....+...+++.+.++|+|||.+++...
T Consensus        93 ~~~~~-------~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~  135 (192)
T 1l3i_A           93 EALCK-------IPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAI  135 (192)
T ss_dssp             HHHTT-------SCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             Hhccc-------CCCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            74332       26899999998767889999999999999999998654

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.67  E-value=3.1e-16  Score=133.52  Aligned_cols=112  Identities=22%  Similarity=0.389  Sum_probs=91.2

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc--CC-CCcEEEEecchhHHHHHHHhcccC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GV-DHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      ..++++|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...  ++ ..+++++.+|+.+.++.+     .
T Consensus       118 ~~~~~~VLdIG~G~G~~a~~la~~~~-~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~-----~  191 (334)
T 1xj5_A          118 IPNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA-----A  191 (334)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS-----C
T ss_pred             CCCCCEEEEECCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhc-----c
Confidence            35678999999999999999998754 689999999999999999998753  44 357999999998876643     1


Q ss_pred             CCCeeEEEEcCCcc----c---hHHHHHHHHhccCCCeEEEEe-ccccC
Q 026461          145 EGSFDYAFVDADKD----N---YCNYHERLMKLLKVGGIAVYD-NTLWG  185 (238)
Q Consensus       145 ~~~fD~V~~d~~~~----~---~~~~~~~~~~~L~~gG~lv~~-~~~~~  185 (238)
                      .++||+|++|....    .   ...+++.+.++|+|||+++++ +..|.
T Consensus       192 ~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~  240 (334)
T 1xj5_A          192 EGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWL  240 (334)
T ss_dssp             TTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTT
T ss_pred             CCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCccc
Confidence            36899999986411    1   478999999999999999996 44443

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.66  E-value=6.1e-16  Score=122.52  Aligned_cols=122  Identities=12%  Similarity=0.088  Sum_probs=93.2

Q ss_pred             HhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCC-CcEEEEecchhHH
Q 026461           56 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSV  134 (238)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~  134 (238)
                      .....++..+....++.+|||+|||+|..++.++...  ..+|+++|+++.+++.|++++...++. ++++++.+|+.+.
T Consensus        39 ~~~~~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~  116 (201)
T 2ift_A           39 RVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQ--AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDF  116 (201)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHH
T ss_pred             HHHHHHHHHHHHhcCCCeEEEcCCccCHHHHHHHHcc--CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHH
Confidence            3334444444433467899999999999999877642  369999999999999999999998875 5799999999876


Q ss_pred             HHHHHhcccCCCC-eeEEEEcCC--ccchHHHHHHH--HhccCCCeEEEEecccc
Q 026461          135 LDQLLKYSENEGS-FDYAFVDAD--KDNYCNYHERL--MKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       135 l~~~~~~~~~~~~-fD~V~~d~~--~~~~~~~~~~~--~~~L~~gG~lv~~~~~~  184 (238)
                      ++.+     ..++ ||+|+++.+  .......++.+  .++|+|||++++.....
T Consensus       117 ~~~~-----~~~~~fD~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~  166 (201)
T 2ift_A          117 LKQP-----QNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKD  166 (201)
T ss_dssp             TTSC-----CSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             HHhh-----ccCCCCCEEEECCCCCCccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            4421     1367 999999976  33456677777  56799999999865443

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.66  E-value=3e-15  Score=131.71  Aligned_cols=160  Identities=19%  Similarity=0.216  Sum_probs=121.6

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      ++.....++..++...++.+|||+|||+|..+..+++.++ .++|+++|+++.+++.+++++...|+  +++++++|+.+
T Consensus       230 ~qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~~~~~l~~~~~~~~~~g~--~~~~~~~D~~~  306 (429)
T 1sqg_A          230 VQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRY  306 (429)
T ss_dssp             ECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTC
T ss_pred             eeCHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHHcCC--CeEEEeCchhh
Confidence            4556667777777777788999999999999999999887 58999999999999999999999887  37899999987


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCccc-------------------------hHHHHHHHHhccCCCeEEEEeccccCccc
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLWGGTV  188 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~~g~~  188 (238)
                      ..+.+.     .++||+|++|.++..                         ...+++.+.++|+|||.+++..+.+..  
T Consensus       307 ~~~~~~-----~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~--  379 (429)
T 1sqg_A          307 PSQWCG-----EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP--  379 (429)
T ss_dssp             THHHHT-----TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG--
T ss_pred             chhhcc-----cCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh--
Confidence            654441     368999999865422                         136788888999999999998765421  


Q ss_pred             cCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeE-----------Eeeec---CCeeEEEEEcC
Q 026461          189 AVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQL-----------SHVAL---GDGITICRRIF  238 (238)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~lp~---~~G~~i~~~~~  238 (238)
                         .++            ......++..+|+++.           .++|-   .+|+++++.+|
T Consensus       380 ---~en------------e~~v~~~l~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k  428 (429)
T 1sqg_A          380 ---EEN------------SLQIKAFLQRTADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIK  428 (429)
T ss_dssp             ---GGT------------HHHHHHHHHHCTTCEECSSBCSSSBSEEECCCTTSCCSEEEEEEEC
T ss_pred             ---hhH------------HHHHHHHHHhCCCCEEeCCCCCCCCeEEECCCCCCCCceEEEEEEE
Confidence               111            2233444566777654           45673   48999998765

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.66  E-value=1.1e-15  Score=125.00  Aligned_cols=118  Identities=22%  Similarity=0.252  Sum_probs=96.5

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHH
Q 026461           58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ  137 (238)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~  137 (238)
                      ...++..+....++.+|||||||+|..+..+++..+  ++|+++|+++.+++.+++++...++.++++++++|+.+. + 
T Consensus        34 ~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-  109 (257)
T 3f4k_A           34 TRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNL-P-  109 (257)
T ss_dssp             HHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-S-
T ss_pred             HHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhC-C-
Confidence            344444443455677999999999999999999875  499999999999999999999999988899999998654 1 


Q ss_pred             HHhcccCCCCeeEEEEcCCcc--chHHHHHHHHhccCCCeEEEEecccc
Q 026461          138 LLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       138 ~~~~~~~~~~fD~V~~d~~~~--~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                           ...++||+|++.....  +...+++.+.++|+|||++++.+..|
T Consensus       110 -----~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  153 (257)
T 3f4k_A          110 -----FQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEASW  153 (257)
T ss_dssp             -----SCTTCEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred             -----CCCCCEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEEeec
Confidence                 1257999999875332  46788999999999999999987654

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.66  E-value=3.7e-15  Score=117.15  Aligned_cols=108  Identities=11%  Similarity=0.173  Sum_probs=90.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++.+|||+|||+|..+..+++.+.+.++|+++|+++.+++.|++++...++.++++++++|+.+.....      .++
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~~   93 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYI------DCP   93 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTC------CSC
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhc------cCC
Confidence            44667999999999999999999875467999999999999999999999988778999999987764322      579


Q ss_pred             eeEEEEcCCc------------cchHHHHHHHHhccCCCeEEEEec
Q 026461          148 FDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       148 fD~V~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ||+|+++.+.            .....+++.+.++|+|||.+++..
T Consensus        94 fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~  139 (197)
T 3eey_A           94 VKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI  139 (197)
T ss_dssp             EEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence            9999987522            123568899999999999999864

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.66  E-value=1.1e-15  Score=122.67  Aligned_cols=105  Identities=21%  Similarity=0.295  Sum_probs=88.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      ...+|||||||+|..+..++...| ..+|+|+|+++.+++.|++++...++.+ ++++.+|+.+.++...    ..++||
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p-~~~v~giD~s~~~l~~a~~~~~~~~l~n-v~~~~~Da~~~l~~~~----~~~~~d  107 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRP-EQDFLGIEVHSPGVGACLASAHEEGLSN-LRVMCHDAVEVLHKMI----PDNSLR  107 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHTTCSS-EEEECSCHHHHHHHHS----CTTCEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCC-CCeEEEEEecHHHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHc----CCCChh
Confidence            567999999999999999999887 7899999999999999999999988754 9999999999877532    258999


Q ss_pred             EEEEcC---Ccc--c------hHHHHHHHHhccCCCeEEEEe
Q 026461          150 YAFVDA---DKD--N------YCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       150 ~V~~d~---~~~--~------~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      .|++..   +..  .      .+.+++.+.+.|+|||++++.
T Consensus       108 ~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~  149 (218)
T 3dxy_A          108 MVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMA  149 (218)
T ss_dssp             EEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEE
Confidence            999862   111  1      135899999999999998874

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.66  E-value=9.5e-16  Score=127.27  Aligned_cols=106  Identities=16%  Similarity=0.206  Sum_probs=88.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc--CC-CCcEEEEecchhHHHHHHHhcccCC
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GV-DHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      .++++|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...  ++ .++++++.+|+.+.++..      .
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~------~  146 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS------E  146 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC------C
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCC-CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC------C
Confidence            4678999999999999999998644 689999999999999999998652  33 368999999999877643      4


Q ss_pred             CCeeEEEEcCCccc-------hHHHHHHHHhccCCCeEEEEec
Q 026461          146 GSFDYAFVDADKDN-------YCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       146 ~~fD~V~~d~~~~~-------~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ++||+|++|.....       ..++++.+.+.|+|||+++++.
T Consensus       147 ~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~  189 (275)
T 1iy9_A          147 NQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (275)
T ss_dssp             SCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            78999999964321       2679999999999999999974

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.66  E-value=3.2e-15  Score=114.42  Aligned_cols=106  Identities=13%  Similarity=0.128  Sum_probs=87.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      ++.+|||+|||+|..+..++...+   +|+++|+++.+++.+++++...++  +++++++|+.+.++.....   .++||
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~---~~~~D  112 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQ---GERFT  112 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHT---TCCEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhcc---CCceE
Confidence            678999999999999999998744   599999999999999999998887  6999999998876654321   35899


Q ss_pred             EEEEcCCc-cchHHHHHHHH--hccCCCeEEEEeccc
Q 026461          150 YAFVDADK-DNYCNYHERLM--KLLKVGGIAVYDNTL  183 (238)
Q Consensus       150 ~V~~d~~~-~~~~~~~~~~~--~~L~~gG~lv~~~~~  183 (238)
                      +|+++... ......++.+.  ++|+|||++++....
T Consensus       113 ~i~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~  149 (171)
T 1ws6_A          113 VAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             EEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred             EEEECCCCchhHHHHHHHHHhhcccCCCcEEEEEeCC
Confidence            99998643 45566777777  999999999986543

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.66  E-value=1.3e-15  Score=134.76  Aligned_cols=125  Identities=18%  Similarity=0.237  Sum_probs=100.5

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      ++.....++..++...++.+|||+|||+|..+..++..++..++|+++|+++.+++.+++++...|+. +++++++|+.+
T Consensus       243 ~qd~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~-~v~~~~~D~~~  321 (450)
T 2yxl_A          243 VQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVKDARK  321 (450)
T ss_dssp             ECCHHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCTTC
T ss_pred             ecCchhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEEEcChhh
Confidence            44455666666777777789999999999999999998874589999999999999999999999985 59999999876


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCccch-------------------------HHHHHHHHhccCCCeEEEEecccc
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKDNY-------------------------CNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~~~-------------------------~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      ..+.+     ..++||+|++|.++...                         ..+++.+.++|+|||.+++..+..
T Consensus       322 ~~~~~-----~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~  392 (450)
T 2yxl_A          322 APEII-----GEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI  392 (450)
T ss_dssp             CSSSS-----CSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             cchhh-----ccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            53212     12689999998654221                         467888899999999999877654

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.65  E-value=4.8e-15  Score=131.81  Aligned_cols=124  Identities=14%  Similarity=0.195  Sum_probs=100.3

Q ss_pred             CcHhHHHHHHHHHhhc--CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461           54 TAPDAGQLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA  131 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~--~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (238)
                      ++.....++..++...  ++.+|||+|||+|..|.++++.++..++|+++|+++.+++.+++++.+.|+. +++++++|+
T Consensus        99 ~Qd~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D~  177 (479)
T 2frx_A           99 IQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-NVALTHFDG  177 (479)
T ss_dssp             ECCHHHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCCS
T ss_pred             EECHHHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCH
Confidence            4445555666666665  7789999999999999999999876789999999999999999999999985 599999999


Q ss_pred             hHHHHHHHhcccCCCCeeEEEEcCCccc-------------------------hHHHHHHHHhccCCCeEEEEecccc
Q 026461          132 LSVLDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       132 ~~~l~~~~~~~~~~~~fD~V~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      .+.....      .++||.|++|.++..                         ...+++.+.++|||||.|++..+.+
T Consensus       178 ~~~~~~~------~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~  249 (479)
T 2frx_A          178 RVFGAAV------PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL  249 (479)
T ss_dssp             TTHHHHS------TTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             HHhhhhc------cccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence            8764433      478999999865321                         1356788889999999999987654

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.65  E-value=1.5e-15  Score=120.42  Aligned_cols=116  Identities=15%  Similarity=0.117  Sum_probs=90.1

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHH
Q 026461           59 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL  138 (238)
Q Consensus        59 ~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~  138 (238)
                      ..++..+....++.+|||+|||+|..++.++...  ..+|+++|+++.+++.|++++...++ ++++++++|+.+.++..
T Consensus        43 ~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~--~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~  119 (202)
T 2fpo_A           43 ETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQK  119 (202)
T ss_dssp             HHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSC
T ss_pred             HHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcC--CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhc
Confidence            3344433332367899999999999999877653  35999999999999999999999887 67999999998865431


Q ss_pred             HhcccCCCCeeEEEEcCC--ccchHHHHHHHHh--ccCCCeEEEEeccc
Q 026461          139 LKYSENEGSFDYAFVDAD--KDNYCNYHERLMK--LLKVGGIAVYDNTL  183 (238)
Q Consensus       139 ~~~~~~~~~fD~V~~d~~--~~~~~~~~~~~~~--~L~~gG~lv~~~~~  183 (238)
                            .++||+|+++.+  .......++.+.+  +|+|||++++....
T Consensus       120 ------~~~fD~V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~  162 (202)
T 2fpo_A          120 ------GTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEV  162 (202)
T ss_dssp             ------CCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             ------CCCCCEEEECCCCCCCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence                  468999999875  3345667777755  59999999886543

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.65  E-value=1.7e-15  Score=124.69  Aligned_cols=118  Identities=17%  Similarity=0.198  Sum_probs=96.3

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHH
Q 026461           58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ  137 (238)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~  137 (238)
                      ...++..+....++.+|||||||+|..+..++.. + ..+|+++|+++.+++.+++++...++.++++++++|+.+..  
T Consensus        34 ~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--  109 (267)
T 3kkz_A           34 TLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-V-TGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP--  109 (267)
T ss_dssp             HHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-C-SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--
T ss_pred             HHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCC--
Confidence            3334433333456789999999999999999987 3 67999999999999999999999999888999999986641  


Q ss_pred             HHhcccCCCCeeEEEEcCCcc--chHHHHHHHHhccCCCeEEEEecccc
Q 026461          138 LLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       138 ~~~~~~~~~~fD~V~~d~~~~--~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                           ...++||+|++.....  +...+++.+.++|+|||++++.+..+
T Consensus       110 -----~~~~~fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  153 (267)
T 3kkz_A          110 -----FRNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSECSW  153 (267)
T ss_dssp             -----CCTTCEEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEEEE
T ss_pred             -----CCCCCEEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEEeee
Confidence                 1257999999875422  46788999999999999999987764

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.65  E-value=1.9e-15  Score=123.45  Aligned_cols=120  Identities=20%  Similarity=0.264  Sum_probs=97.1

Q ss_pred             cHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH
Q 026461           55 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV  134 (238)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (238)
                      .+.....+...+...++.+|||||||+|..+..++...  +.+|+++|+++.+++.+++++...++.+++++.++|+.+.
T Consensus        21 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~   98 (256)
T 1nkv_A           21 TEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY   98 (256)
T ss_dssp             CHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhC
Confidence            33344444444456677899999999999999999876  4699999999999999999999999887899999998765


Q ss_pred             HHHHHhcccCCCCeeEEEEcCCc---cchHHHHHHHHhccCCCeEEEEecccc
Q 026461          135 LDQLLKYSENEGSFDYAFVDADK---DNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       135 l~~~~~~~~~~~~fD~V~~d~~~---~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      ..        .++||+|++....   .+....++.+.+.|+|||.+++.+..+
T Consensus        99 ~~--------~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~  143 (256)
T 1nkv_A           99 VA--------NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYW  143 (256)
T ss_dssp             CC--------SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred             Cc--------CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcc
Confidence            21        4789999986432   346788999999999999999976554

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.65  E-value=3.4e-16  Score=127.12  Aligned_cols=109  Identities=18%  Similarity=0.187  Sum_probs=89.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .++.+|||||||+|.++.++++..+  .+|++||+++.+++.|+++....+  .+++++.+|+.+....+     ..++|
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~--~~~~~~~~~a~~~~~~~-----~~~~F  129 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTL-----PDGHF  129 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGS-----CTTCE
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCC--CceEEEeehHHhhcccc-----cccCC
Confidence            4567999999999999999998654  589999999999999999987765  46899999998876544     36789


Q ss_pred             eEEEEcCCc--------cchHHHHHHHHhccCCCeEEEEeccccCc
Q 026461          149 DYAFVDADK--------DNYCNYHERLMKLLKVGGIAVYDNTLWGG  186 (238)
Q Consensus       149 D~V~~d~~~--------~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (238)
                      |.|++|...        .....+++++.++|||||++++.+....+
T Consensus       130 D~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~  175 (236)
T 3orh_A          130 DGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWG  175 (236)
T ss_dssp             EEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHH
T ss_pred             ceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEecCCch
Confidence            999998532        23456888999999999999997765444

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.64  E-value=1.9e-15  Score=126.71  Aligned_cols=107  Identities=17%  Similarity=0.187  Sum_probs=87.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHH--cCC-CCcEEEEecchhHHHHHHHhcccC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK--AGV-DHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      ..++++|||||||+|..+..+++..+ ..+|+++|+++.+++.+++++..  .++ .++++++.+|+.+.++..      
T Consensus        88 ~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------  160 (296)
T 1inl_A           88 HPNPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF------  160 (296)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC------
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC------
Confidence            34678999999999999999998754 68999999999999999999865  233 367999999998865432      


Q ss_pred             CCCeeEEEEcCCcc--------chHHHHHHHHhccCCCeEEEEec
Q 026461          145 EGSFDYAFVDADKD--------NYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       145 ~~~fD~V~~d~~~~--------~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      .++||+|++|....        ....+++.+.++|+|||++++..
T Consensus       161 ~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  205 (296)
T 1inl_A          161 KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  205 (296)
T ss_dssp             SSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            47899999986433        23788999999999999999963

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.64  E-value=2.1e-15  Score=119.85  Aligned_cols=105  Identities=20%  Similarity=0.301  Sum_probs=89.6

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeE
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  150 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~  150 (238)
                      +.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++++...++.++++++++|+.+..  +     ..++||+
T Consensus        44 ~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~-----~~~~~D~  114 (219)
T 3dlc_A           44 AGTCIDIGSGPGALSIALAKQ-S-DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIP--I-----EDNYADL  114 (219)
T ss_dssp             EEEEEEETCTTSHHHHHHHHH-S-EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCS--S-----CTTCEEE
T ss_pred             CCEEEEECCCCCHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCC--C-----CcccccE
Confidence            349999999999999999997 3 67999999999999999999999998888999999987641  1     2579999


Q ss_pred             EEEcCCc---cchHHHHHHHHhccCCCeEEEEecccc
Q 026461          151 AFVDADK---DNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       151 V~~d~~~---~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      |++....   .....+++.+.+.|+|||.+++.+...
T Consensus       115 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  151 (219)
T 3dlc_A          115 IVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFG  151 (219)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred             EEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccC
Confidence            9998643   445789999999999999999976543

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.64  E-value=4.4e-15  Score=124.51  Aligned_cols=105  Identities=8%  Similarity=0.090  Sum_probs=91.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .++.+|||||||+|..+..+++..+  .+|+++|+++.+++.+++++...++.+++++..+|+.+.          .++|
T Consensus        71 ~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----------~~~f  138 (302)
T 3hem_A           71 EPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF----------DEPV  138 (302)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC----------CCCC
T ss_pred             CCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc----------CCCc
Confidence            4567999999999999999999764  689999999999999999999999988899999999765          3799


Q ss_pred             eEEEEcCCccc------------hHHHHHHHHhccCCCeEEEEeccccC
Q 026461          149 DYAFVDADKDN------------YCNYHERLMKLLKVGGIAVYDNTLWG  185 (238)
Q Consensus       149 D~V~~d~~~~~------------~~~~~~~~~~~L~~gG~lv~~~~~~~  185 (238)
                      |+|++....++            +..+++.+.++|+|||.+++.+....
T Consensus       139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  187 (302)
T 3hem_A          139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP  187 (302)
T ss_dssp             SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred             cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence            99998754333            37899999999999999999877643

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.64  E-value=2.1e-15  Score=123.36  Aligned_cols=118  Identities=20%  Similarity=0.271  Sum_probs=99.4

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      +.+.....+...+...++.+|||+|||+|..+..++..+.+.++|+++|+++++++.|++++...++.++++++++|+.+
T Consensus        77 ~~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  156 (255)
T 3mb5_A           77 VHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE  156 (255)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG
T ss_pred             ccHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh
Confidence            45556566666666778889999999999999999998544789999999999999999999999988889999999986


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      .++        .++||+|+++..  ....+++.+.+.|+|||.+++..
T Consensus       157 ~~~--------~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~  194 (255)
T 3mb5_A          157 GIE--------EENVDHVILDLP--QPERVVEHAAKALKPGGFFVAYT  194 (255)
T ss_dssp             CCC--------CCSEEEEEECSS--CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             ccC--------CCCcCEEEECCC--CHHHHHHHHHHHcCCCCEEEEEE
Confidence            522        468999999753  44678899999999999999854

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.64  E-value=1e-15  Score=125.82  Aligned_cols=114  Identities=18%  Similarity=0.206  Sum_probs=95.4

Q ss_pred             HHHHHHHHhhc-CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHH
Q 026461           59 GQLMAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ  137 (238)
Q Consensus        59 ~~~l~~l~~~~-~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~  137 (238)
                      +.++..++... ++.+|||+|||+|..++.++...+  .+|+++|+++.+++.|++++...++.++++++++|+.+..+.
T Consensus        37 ~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~--~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~  114 (259)
T 3lpm_A           37 AVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL  114 (259)
T ss_dssp             HHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCC--CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT
T ss_pred             HHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcC--CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh
Confidence            56677777666 788999999999999999998754  499999999999999999999999988899999999887543


Q ss_pred             HHhcccCCCCeeEEEEcCCc-----------------------cchHHHHHHHHhccCCCeEEEE
Q 026461          138 LLKYSENEGSFDYAFVDADK-----------------------DNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       138 ~~~~~~~~~~fD~V~~d~~~-----------------------~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      +     ..++||+|+++.+.                       ..+..+++.+.++|+|||.+++
T Consensus       115 ~-----~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~  174 (259)
T 3lpm_A          115 I-----PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANF  174 (259)
T ss_dssp             S-----CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             h-----ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEE
Confidence            2     24799999997432                       1235688889999999999998

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.64  E-value=2.3e-15  Score=117.25  Aligned_cols=115  Identities=15%  Similarity=0.143  Sum_probs=92.6

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCC-cEEEEecchhHHHH
Q 026461           58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLD  136 (238)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~l~  136 (238)
                      ..+.+...+...++.+|||+|||+|..+..++..   ..+|+++|+++.+++.+++++...++.+ +++++.+|+.+.++
T Consensus        40 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~  116 (194)
T 1dus_A           40 GTKILVENVVVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK  116 (194)
T ss_dssp             HHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT
T ss_pred             HHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc
Confidence            3333333444557789999999999999999986   5799999999999999999999888765 59999999877432


Q ss_pred             HHHhcccCCCCeeEEEEcCCc----cchHHHHHHHHhccCCCeEEEEeccc
Q 026461          137 QLLKYSENEGSFDYAFVDADK----DNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       137 ~~~~~~~~~~~fD~V~~d~~~----~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                              .++||+|+++...    .....+++.+.++|+|||.+++....
T Consensus       117 --------~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  159 (194)
T 1dus_A          117 --------DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT  159 (194)
T ss_dssp             --------TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             --------cCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence                    4689999998653    33567889999999999999987543

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.64  E-value=7.5e-16  Score=119.93  Aligned_cols=103  Identities=13%  Similarity=0.096  Sum_probs=83.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .++.+|||+|||+|..+..+++.   ..+|+++|+++.+++.|++++...++ +++++++++.......      ..++|
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~~------~~~~f   90 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDHY------VREPI   90 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGGT------CCSCE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHhh------ccCCc
Confidence            45679999999999999999986   57999999999999999999999888 6799999776554221      14789


Q ss_pred             eEEEEcC-Cc-----------cchHHHHHHHHhccCCCeEEEEec
Q 026461          149 DYAFVDA-DK-----------DNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       149 D~V~~d~-~~-----------~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      |+|+++. ..           ......++.+.+.|+|||.+++..
T Consensus        91 D~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  135 (185)
T 3mti_A           91 RAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMI  135 (185)
T ss_dssp             EEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEE
Confidence            9999872 21           223467788899999999998853

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.63  E-value=9.6e-16  Score=126.19  Aligned_cols=121  Identities=13%  Similarity=0.178  Sum_probs=96.2

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHH---cCCCCcEEEEecchhHH
Q 026461           58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK---AGVDHKINFIESEALSV  134 (238)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~---~~~~~~v~~~~~d~~~~  134 (238)
                      .+-+|..++...++.+|||+|||+|..++.++...+ ..+|+++|+++.+++.|++++..   .++.++++++++|+.+.
T Consensus        24 D~~lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~  102 (260)
T 2ozv_A           24 DAMLLASLVADDRACRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLR  102 (260)
T ss_dssp             HHHHHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCC
T ss_pred             HHHHHHHHhcccCCCEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHH
Confidence            344556565556677999999999999999999886 68999999999999999999988   88877899999999887


Q ss_pred             HHHHHhcccCCCCeeEEEEcCCc---------------------cchHHHHHHHHhccCCCeEEEE
Q 026461          135 LDQLLKYSENEGSFDYAFVDADK---------------------DNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       135 l~~~~~~~~~~~~fD~V~~d~~~---------------------~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      .+.........++||+|+++.+.                     ..+..+++.+.++|+|||.+++
T Consensus       103 ~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~  168 (260)
T 2ozv_A          103 AKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSL  168 (260)
T ss_dssp             HHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEE
Confidence            54321111124789999998421                     1256788888999999999887

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.63  E-value=2.5e-15  Score=126.39  Aligned_cols=107  Identities=16%  Similarity=0.147  Sum_probs=88.3

Q ss_pred             cCCC--EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           69 VNAK--KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        69 ~~~~--~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      .+++  +|||||||+|..+.++++.++ +.+|++||+++.+++.|++++.... ..+++++.+|+.+++..+     ..+
T Consensus        86 p~p~~~rVLdIG~G~G~la~~la~~~p-~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~-----~~~  158 (317)
T 3gjy_A           86 QDASKLRITHLGGGACTMARYFADVYP-QSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESF-----TPA  158 (317)
T ss_dssp             SCGGGCEEEEESCGGGHHHHHHHHHST-TCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTC-----CTT
T ss_pred             CCCCCCEEEEEECCcCHHHHHHHHHCC-CcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhc-----cCC
Confidence            3444  999999999999999999877 6799999999999999999985432 468999999999987643     147


Q ss_pred             CeeEEEEcCCcc-----c--hHHHHHHHHhccCCCeEEEEecc
Q 026461          147 SFDYAFVDADKD-----N--YCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       147 ~fD~V~~d~~~~-----~--~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      +||+|++|....     .  ..++++.+.++|+|||+++++..
T Consensus       159 ~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~  201 (317)
T 3gjy_A          159 SRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG  201 (317)
T ss_dssp             CEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence            899999985321     1  27899999999999999998753

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.62  E-value=4.6e-15  Score=117.41  Aligned_cols=100  Identities=14%  Similarity=0.122  Sum_probs=87.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      ++.+|||+|||+|..+..++...+ ..+|+++|+++.+++.+++++...++.+ ++++++|+.+..+        .++||
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~--------~~~~D  134 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFPS--------EPPFD  134 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSCC--------CSCEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEecchhhCCc--------cCCcC
Confidence            468999999999999999999876 7899999999999999999999988765 9999999876521        47899


Q ss_pred             EEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          150 YAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       150 ~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      +|++.. ...+..+++.+.++|+|||++++.
T Consensus       135 ~i~~~~-~~~~~~~l~~~~~~L~~gG~l~~~  164 (207)
T 1jsx_A          135 GVISRA-FASLNDMVSWCHHLPGEQGRFYAL  164 (207)
T ss_dssp             EEECSC-SSSHHHHHHHHTTSEEEEEEEEEE
T ss_pred             EEEEec-cCCHHHHHHHHHHhcCCCcEEEEE
Confidence            999765 456788999999999999999986

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.62  E-value=2.6e-14  Score=110.30  Aligned_cols=114  Identities=21%  Similarity=0.155  Sum_probs=94.4

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      ........+...+...++.+|||+|||+|..+..++.  + ..+|+++|+++.+++.+++++...++ .+++++++|+.+
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~--~-~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~   94 (183)
T 2yxd_A           19 TKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK--R-CKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAED   94 (183)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT--T-SSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHH
T ss_pred             CHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh--c-CCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCccc
Confidence            4455555555555666778999999999999999998  3 78999999999999999999999887 569999999877


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      .++        .++||+|+++.. .....+++.+.++  |||.+++...
T Consensus        95 ~~~--------~~~~D~i~~~~~-~~~~~~l~~~~~~--~gG~l~~~~~  132 (183)
T 2yxd_A           95 VLD--------KLEFNKAFIGGT-KNIEKIIEILDKK--KINHIVANTI  132 (183)
T ss_dssp             HGG--------GCCCSEEEECSC-SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred             ccc--------CCCCcEEEECCc-ccHHHHHHHHhhC--CCCEEEEEec
Confidence            322        368999999877 7778889998887  9999998754

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.62  E-value=2.2e-15  Score=123.35  Aligned_cols=103  Identities=19%  Similarity=0.290  Sum_probs=88.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      ++.+|||||||+|..++.++...+ ..+|+++|+++.+++.+++++...++.+ ++++++|+.+.....    ...++||
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~l~~-v~~~~~d~~~~~~~~----~~~~~fD  153 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRP-ELELVLVDATRKKVAFVERAIEVLGLKG-ARALWGRAEVLAREA----GHREAYA  153 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEECCHHHHTTST----TTTTCEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCc-eEEEECcHHHhhccc----ccCCCce
Confidence            467999999999999999999876 7899999999999999999999999865 999999997763210    0137999


Q ss_pred             EEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          150 YAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       150 ~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      +|++.+. ..+..+++.+.++|+|||.+++
T Consensus       154 ~I~s~a~-~~~~~ll~~~~~~LkpgG~l~~  182 (249)
T 3g89_A          154 RAVARAV-APLCVLSELLLPFLEVGGAAVA  182 (249)
T ss_dssp             EEEEESS-CCHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEECCc-CCHHHHHHHHHHHcCCCeEEEE
Confidence            9999864 4568899999999999998886

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.62  E-value=2.8e-15  Score=118.95  Aligned_cols=113  Identities=20%  Similarity=0.241  Sum_probs=93.2

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      ..+.....+...+...++.+|||||||+|..+..+++.   ..+|+++|+++.+++.+++++...++. +++++.+|+.+
T Consensus        61 ~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~  136 (210)
T 3lbf_A           61 SQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQ  136 (210)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGG
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCccc
Confidence            45666666666666677889999999999999999987   579999999999999999999998875 69999999987


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      .++.       .++||+|+++...+...+   .+.++|+|||.+++.
T Consensus       137 ~~~~-------~~~~D~i~~~~~~~~~~~---~~~~~L~pgG~lv~~  173 (210)
T 3lbf_A          137 GWQA-------RAPFDAIIVTAAPPEIPT---ALMTQLDEGGILVLP  173 (210)
T ss_dssp             CCGG-------GCCEEEEEESSBCSSCCT---HHHHTEEEEEEEEEE
T ss_pred             CCcc-------CCCccEEEEccchhhhhH---HHHHhcccCcEEEEE
Confidence            5332       479999999876555443   578999999999985

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.62  E-value=6e-15  Score=117.85  Aligned_cols=105  Identities=14%  Similarity=0.278  Sum_probs=87.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .+..+|||||||+|..+..++...| ..+|+|+|+++.+++.|++++...++. +++++++|+.++...+     ..++|
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~giD~s~~~l~~a~~~~~~~~~~-nv~~~~~d~~~l~~~~-----~~~~~  109 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVF-----EPGEV  109 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHC-----CTTSC
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCC-CCCEEEEEechHHHHHHHHHHHHcCCC-CEEEEeCCHHHHHhhc-----CcCCc
Confidence            3567899999999999999999876 789999999999999999999998874 5999999998743323     24789


Q ss_pred             eEEEEcCCcc-----------chHHHHHHHHhccCCCeEEEEe
Q 026461          149 DYAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       149 D~V~~d~~~~-----------~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      |.|++....+           ....+++.+.+.|+|||.+++.
T Consensus       110 d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~  152 (213)
T 2fca_A          110 KRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  152 (213)
T ss_dssp             CEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             CEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEE
Confidence            9998863211           1467899999999999999875

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.62  E-value=1e-14  Score=115.34  Aligned_cols=114  Identities=15%  Similarity=0.189  Sum_probs=93.6

Q ss_pred             HHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHH
Q 026461           58 AGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD  136 (238)
Q Consensus        58 ~~~~l~~l~~-~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~  136 (238)
                      ...++..+.. ..++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|++++...+..+ ++++.+|+.+.. 
T Consensus        47 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~-  122 (205)
T 3grz_A           47 TQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKL-G-AKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADV-  122 (205)
T ss_dssp             HHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTC-
T ss_pred             HHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccC-
Confidence            3344444443 346779999999999999998874 3 5799999999999999999999988866 999999986641 


Q ss_pred             HHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          137 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       137 ~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                              .++||+|+++...+....+++.+.++|+|||.+++.+..
T Consensus       123 --------~~~fD~i~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  161 (205)
T 3grz_A          123 --------DGKFDLIVANILAEILLDLIPQLDSHLNEDGQVIFSGID  161 (205)
T ss_dssp             --------CSCEEEEEEESCHHHHHHHGGGSGGGEEEEEEEEEEEEE
T ss_pred             --------CCCceEEEECCcHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence                    479999999987777788888889999999999986544

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.62  E-value=1.2e-14  Score=115.85  Aligned_cols=113  Identities=19%  Similarity=0.267  Sum_probs=93.6

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           65 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      .+...++.+|||+|||+|..+..++...++..+|+++|+++.+++.+++++...++. +++++.+|+.+..  +     .
T Consensus        32 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~--~-----~  103 (219)
T 3dh0_A           32 EFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIP--L-----P  103 (219)
T ss_dssp             HHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCS--S-----C
T ss_pred             HhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCC--C-----C
Confidence            334567789999999999999999998744789999999999999999999988875 6999999987641  1     2


Q ss_pred             CCCeeEEEEcCCc---cchHHHHHHHHhccCCCeEEEEeccccC
Q 026461          145 EGSFDYAFVDADK---DNYCNYHERLMKLLKVGGIAVYDNTLWG  185 (238)
Q Consensus       145 ~~~fD~V~~d~~~---~~~~~~~~~~~~~L~~gG~lv~~~~~~~  185 (238)
                      .++||+|++....   .+...+++.+.+.|+|||.+++.+....
T Consensus       104 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  147 (219)
T 3dh0_A          104 DNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKE  147 (219)
T ss_dssp             SSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             CCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEeccc
Confidence            5789999987543   3457889999999999999999765543

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.61  E-value=3.3e-14  Score=117.84  Aligned_cols=117  Identities=20%  Similarity=0.270  Sum_probs=95.8

Q ss_pred             cHhHHHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           55 APDAGQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        55 ~~~~~~~l~~l~~~--~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      .+....++..++..  .++.+|||+|||+|..+..++...+ ..+|+++|+++.+++.+++++...++. +++++++|+.
T Consensus        92 r~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~  169 (276)
T 2b3t_A           92 RPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWF  169 (276)
T ss_dssp             CTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTT
T ss_pred             CchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchh
Confidence            45666666666654  4567999999999999999998876 789999999999999999999998875 6999999987


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcCCc----------------------------cchHHHHHHHHhccCCCeEEEEec
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      +.++        .++||+|+++.+.                            ..+..+++.+.++|+|||++++..
T Consensus       170 ~~~~--------~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~  238 (276)
T 2b3t_A          170 SALA--------GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH  238 (276)
T ss_dssp             GGGT--------TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             hhcc--------cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            7532        3689999997421                            234667788889999999999863

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.61  E-value=5e-15  Score=125.48  Aligned_cols=107  Identities=19%  Similarity=0.277  Sum_probs=88.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHH--cCC-CCcEEEEecchhHHHHHHHhcccC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK--AGV-DHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      ..++++|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++..  .++ .++++++.+|+.+.++..      
T Consensus       114 ~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------  186 (321)
T 2pt6_A          114 SKEPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV------  186 (321)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC------
T ss_pred             CCCCCEEEEEcCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhc------
Confidence            45678999999999999999998654 68999999999999999999865  233 367999999998876653      


Q ss_pred             CCCeeEEEEcCCcc------ch-HHHHHHHHhccCCCeEEEEec
Q 026461          145 EGSFDYAFVDADKD------NY-CNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       145 ~~~fD~V~~d~~~~------~~-~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      .++||+|++|....      .+ ..+++.+.+.|+|||++++..
T Consensus       187 ~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  230 (321)
T 2pt6_A          187 TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  230 (321)
T ss_dssp             CSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            47899999986311      12 788999999999999999963

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.61  E-value=4e-15  Score=118.67  Aligned_cols=104  Identities=17%  Similarity=0.313  Sum_probs=87.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      ++.+|||||||+|..+..++...| ..+|+++|+++.+++.|++++...++ .+++++.+|+.+....+     ..++||
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~-----~~~~~D  113 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYF-----EDGEID  113 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTS-----CTTCCS
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhc-----CCCCCC
Confidence            567999999999999999999887 78999999999999999999999887 57999999997742212     246899


Q ss_pred             EEEEcCCcc-----------chHHHHHHHHhccCCCeEEEEe
Q 026461          150 YAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       150 ~V~~d~~~~-----------~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      +|+++.+..           ....+++.+.+.|+|||++++.
T Consensus       114 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  155 (214)
T 1yzh_A          114 RLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK  155 (214)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred             EEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEE
Confidence            999985422           2367999999999999999884

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.61  E-value=6.3e-14  Score=119.24  Aligned_cols=116  Identities=15%  Similarity=0.220  Sum_probs=92.2

Q ss_pred             HHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCC-cEEEEecchhHHHHHHH
Q 026461           62 MAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLL  139 (238)
Q Consensus        62 l~~l~~-~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~l~~~~  139 (238)
                      +..++. ..++.+|||+|||+|..++.++..   +.+|+++|+++.+++.|++++..+++.+ +++++++|+.+.++...
T Consensus       144 l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~---ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~  220 (332)
T 2igt_A          144 LKNAVETADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREE  220 (332)
T ss_dssp             HHHHHHHSSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHH
T ss_pred             HHHHHHhcCCCCcEEEcccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHH
Confidence            444443 235679999999999999999984   3499999999999999999999999876 59999999998876542


Q ss_pred             hcccCCCCeeEEEEcCCc-------------cchHHHHHHHHhccCCCeEEEEeccc
Q 026461          140 KYSENEGSFDYAFVDADK-------------DNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       140 ~~~~~~~~fD~V~~d~~~-------------~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ..   .++||+|++|.+.             ..+..+++.+.++|+|||++++....
T Consensus       221 ~~---~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~  274 (332)
T 2igt_A          221 RR---GSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY  274 (332)
T ss_dssp             HH---TCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred             hc---CCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence            21   4689999998652             12467888888999999997775543

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.60  E-value=1.3e-14  Score=116.68  Aligned_cols=137  Identities=17%  Similarity=0.183  Sum_probs=99.7

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ..++.+|||+||| +|..+..++...  ..+|+++|+++.+++.|++++...++  +++++++|+....+ +     ..+
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~-~-----~~~  122 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKG-V-----VEG  122 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTT-T-----CCS
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhh-c-----ccC
Confidence            4567899999999 999999999875  57999999999999999999999887  69999999643211 1     147


Q ss_pred             CeeEEEEcCCcc----------------------chHHHHHHHHhccCCCeEEEEeccccCccccCCCCCCCCCcccchH
Q 026461          147 SFDYAFVDADKD----------------------NYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSR  204 (238)
Q Consensus       147 ~fD~V~~d~~~~----------------------~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~  204 (238)
                      +||+|+++.+..                      .+..+++.+.++|+|||.+++.-..  +                 .
T Consensus       123 ~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~-----------------~  183 (230)
T 3evz_A          123 TFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD--K-----------------E  183 (230)
T ss_dssp             CEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES--C-----------------H
T ss_pred             ceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc--c-----------------H
Confidence            999999884321                      1367889999999999999874111  0                 0


Q ss_pred             HHHHHHHHHhhcCCCeeEEeeecCCeeEEE
Q 026461          205 QAILDLNRSLADDPRVQLSHVALGDGITIC  234 (238)
Q Consensus       205 ~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~  234 (238)
                      ....++.+.+.+. ++....+.+..|..+.
T Consensus       184 ~~~~~~~~~l~~~-g~~~~~~~~~~g~~~~  212 (230)
T 3evz_A          184 KLLNVIKERGIKL-GYSVKDIKFKVGTRWR  212 (230)
T ss_dssp             HHHHHHHHHHHHT-TCEEEEEEECCCC-CE
T ss_pred             hHHHHHHHHHHHc-CCceEEEEecCCCeEE
Confidence            1144555555443 5666666666665443

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.59  E-value=1.5e-13  Score=106.72  Aligned_cols=160  Identities=13%  Similarity=0.097  Sum_probs=107.8

Q ss_pred             HhHHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH
Q 026461           56 PDAGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV  134 (238)
Q Consensus        56 ~~~~~~l~~l~~-~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (238)
                      +....+...... ..++.+|||+|||+|..++.++...| ..+|+++|+|+.+++.+++++...|...++++  +|..+.
T Consensus        34 p~ld~fY~~~~~~l~~~~~VLDlGCG~GplAl~l~~~~p-~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~  110 (200)
T 3fzg_A           34 ATLNDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNENE-KIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD  110 (200)
T ss_dssp             GGHHHHHHHHHHHSCCCSEEEEETCTTHHHHHHHHCSSC-CCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH
T ss_pred             HhHHHHHHHHHhhcCCCCeEEEecCCCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc
Confidence            334444444333 35688999999999999999988776 67999999999999999999999998767777  455443


Q ss_pred             HHHHHhcccCCCCeeEEEEcCCccchH---HHHHHHHhccCCCeEEEEeccc-cCccccCCCCCCCCCcccchHHHHHHH
Q 026461          135 LDQLLKYSENEGSFDYAFVDADKDNYC---NYHERLMKLLKVGGIAVYDNTL-WGGTVAVPEEQVPDHFRGSSRQAILDL  210 (238)
Q Consensus       135 l~~~~~~~~~~~~fD~V~~d~~~~~~~---~~~~~~~~~L~~gG~lv~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~  210 (238)
                      .+        .++||+|+.....+...   ..+..+.+.|+|||++|--++. ..|.    ......++       .+.|
T Consensus       111 ~~--------~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfISfptksl~Gr----~~gm~~~Y-------~~~~  171 (200)
T 3fzg_A          111 VY--------KGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISFPIKSLSGK----EKGMEENY-------QLWF  171 (200)
T ss_dssp             HT--------TSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEEECCCCC------CTTCCCCH-------HHHH
T ss_pred             CC--------CCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEeChHHhcCC----CcchhhhH-------HHHH
Confidence            22        58899999875443332   2344678999999998875521 2222    21111111       3344


Q ss_pred             HHHhhcCCCeeEEeeecCCeeEEEEEcC
Q 026461          211 NRSLADDPRVQLSHVALGDGITICRRIF  238 (238)
Q Consensus       211 ~~~l~~~~~~~~~~lp~~~G~~i~~~~~  238 (238)
                      .+.+ .........+-+++-+....+++
T Consensus       172 ~~~~-~~~~~~~~~~~~~nEl~y~~~~~  198 (200)
T 3fzg_A          172 ESFT-KGWIKILDSKVIGNELVYITSGF  198 (200)
T ss_dssp             HHHT-TTTSCEEEEEEETTEEEEEECCC
T ss_pred             HHhc-cCcceeeeeeeeCceEEEEEecc
Confidence            4445 55555666677777777666653

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.59  E-value=3.2e-14  Score=118.51  Aligned_cols=107  Identities=18%  Similarity=0.249  Sum_probs=88.5

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC--C-CCcEEEEecchhHHHHHHHhcccC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      ..++++|||||||+|..+..+++..+ ..+|+++|+++.+++.+++++...+  + .++++++.+|+.+.++..      
T Consensus        76 ~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------  148 (283)
T 2i7c_A           76 SKEPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV------  148 (283)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC------
T ss_pred             CCCCCeEEEEeCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC------
Confidence            34678999999999999999998654 6899999999999999999886532  2 367999999998877653      


Q ss_pred             CCCeeEEEEcCCcc-----ch--HHHHHHHHhccCCCeEEEEec
Q 026461          145 EGSFDYAFVDADKD-----NY--CNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       145 ~~~fD~V~~d~~~~-----~~--~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      .++||+|++|....     ..  ..+++.+.++|+|||++++..
T Consensus       149 ~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  192 (283)
T 2i7c_A          149 TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  192 (283)
T ss_dssp             CSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence            57899999986321     11  689999999999999999874

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.59  E-value=1.4e-14  Score=117.60  Aligned_cols=106  Identities=18%  Similarity=0.221  Sum_probs=84.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHH------cCCCCcEEEEecchhHHHHHHHhcc
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK------AGVDHKINFIESEALSVLDQLLKYS  142 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~------~~~~~~v~~~~~d~~~~l~~~~~~~  142 (238)
                      .+..+|||||||+|..+..++...+ ..+|+|+|+++.+++.|++++..      .+. .+++++.+|+.+.++...   
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~---  119 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFP-DTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFF---  119 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGST-TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHC---
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhC---
Confidence            4566899999999999999999876 78999999999999999988764      333 469999999987555431   


Q ss_pred             cCCCCeeEEEEcCCccc-----------hHHHHHHHHhccCCCeEEEEe
Q 026461          143 ENEGSFDYAFVDADKDN-----------YCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       143 ~~~~~fD~V~~d~~~~~-----------~~~~~~~~~~~L~~gG~lv~~  180 (238)
                       ..++||.|++......           ...+++.+.+.|+|||.+++.
T Consensus       120 -~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~  167 (235)
T 3ckk_A          120 -YKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI  167 (235)
T ss_dssp             -CTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             -CCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence             2579999988642211           257899999999999999874

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.59  E-value=4.6e-15  Score=117.54  Aligned_cols=120  Identities=15%  Similarity=0.243  Sum_probs=74.5

Q ss_pred             cHhHHHHHHHHHhh----cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecc
Q 026461           55 APDAGQLMAMLLRL----VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE  130 (238)
Q Consensus        55 ~~~~~~~l~~l~~~----~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d  130 (238)
                      .+....++..++..    .++.+|||+|||+|..+..++...+ ..+|+++|+++.+++.+++++...+.  +++++++|
T Consensus        11 ~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d   87 (215)
T 4dzr_A           11 RPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACP-GVSVTAVDLSMDALAVARRNAERFGA--VVDWAAAD   87 (215)
T ss_dssp             CHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCT-TEEEEEEECC---------------------CCHHH
T ss_pred             CccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcc
Confidence            34455555555443    5678999999999999999999876 77999999999999999999988776  68999999


Q ss_pred             hhHHHHHHHhcccCCCCeeEEEEcCCccc-----------------------------hHHHHHHHHhccCCCeE-EEEe
Q 026461          131 ALSVLDQLLKYSENEGSFDYAFVDADKDN-----------------------------YCNYHERLMKLLKVGGI-AVYD  180 (238)
Q Consensus       131 ~~~~l~~~~~~~~~~~~fD~V~~d~~~~~-----------------------------~~~~~~~~~~~L~~gG~-lv~~  180 (238)
                      +.+.++....   ..++||+|+++.+...                             +..+++.+.++|+|||+ +++.
T Consensus        88 ~~~~~~~~~~---~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  164 (215)
T 4dzr_A           88 GIEWLIERAE---RGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLE  164 (215)
T ss_dssp             HHHHHHHHHH---TTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEE
T ss_pred             hHhhhhhhhh---ccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            9885553211   1479999999743110                             15666777799999999 6654

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.58  E-value=7.8e-15  Score=117.78  Aligned_cols=113  Identities=11%  Similarity=0.103  Sum_probs=92.3

Q ss_pred             HHHHHhhc-CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHh
Q 026461           62 MAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK  140 (238)
Q Consensus        62 l~~l~~~~-~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~  140 (238)
                      |..+.... ++.+|+|||||+|+.++.++...+ ..+|+++|+++.+++.|++|++.+|+.+++++..+|..+.++.   
T Consensus         6 L~~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~---   81 (225)
T 3kr9_A            6 LELVASFVSQGAILLDVGSDHAYLPIELVERGQ-IKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE---   81 (225)
T ss_dssp             HHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG---
T ss_pred             HHHHHHhCCCCCEEEEeCCCcHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc---
Confidence            44455544 445899999999999999999765 6799999999999999999999999988999999998775432   


Q ss_pred             cccCCCCeeEEEEcC-CccchHHHHHHHHhccCCCeEEEEecc
Q 026461          141 YSENEGSFDYAFVDA-DKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       141 ~~~~~~~fD~V~~d~-~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                          ..+||+|++.+ .......+++.....|+++|.+|+...
T Consensus        82 ----~~~~D~IviaG~Gg~~i~~Il~~~~~~L~~~~~lVlq~~  120 (225)
T 3kr9_A           82 ----TDQVSVITIAGMGGRLIARILEEGLGKLANVERLILQPN  120 (225)
T ss_dssp             ----GGCCCEEEEEEECHHHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred             ----CcCCCEEEEcCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence                13799998754 333467888888899999999998754

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.58  E-value=4.8e-15  Score=123.96  Aligned_cols=114  Identities=15%  Similarity=0.278  Sum_probs=87.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCC---------------------------
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD---------------------------  121 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~---------------------------  121 (238)
                      .++++|||||||+|..+..++..++ ..+|+|+|+++.+++.|++++...+..                           
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~-~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR  123 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTC-CSEEEEEESCHHHHHHHHHTC---------------------------------
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence            3678999999999999999999986 679999999999999999987654422                           


Q ss_pred             ------------------------------CcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCc---c------chHH
Q 026461          122 ------------------------------HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---D------NYCN  162 (238)
Q Consensus       122 ------------------------------~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~---~------~~~~  162 (238)
                                                    .+++|.++|.......+..  ...++||+|++....   +      ....
T Consensus       124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~--~~~~~fD~I~~~~vl~~ihl~~~~~~~~~  201 (292)
T 3g07_A          124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVE--AQTPEYDVVLCLSLTKWVHLNWGDEGLKR  201 (292)
T ss_dssp             ------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHT--TCCCCEEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhccCccccccccccccccccccccceEEecccccCcccccc--ccCCCcCEEEEChHHHHhhhcCCHHHHHH
Confidence                                          5799999998743222211  125899999987643   2      4567


Q ss_pred             HHHHHHhccCCCeEEEEeccccC
Q 026461          163 YHERLMKLLKVGGIAVYDNTLWG  185 (238)
Q Consensus       163 ~~~~~~~~L~~gG~lv~~~~~~~  185 (238)
                      +++.+.++|+|||++++....|.
T Consensus       202 ~l~~~~~~LkpGG~lil~~~~~~  224 (292)
T 3g07_A          202 MFRRIYRHLRPGGILVLEPQPWS  224 (292)
T ss_dssp             HHHHHHHHEEEEEEEEEECCCHH
T ss_pred             HHHHHHHHhCCCcEEEEecCCch
Confidence            89999999999999999866554

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.58  E-value=7.7e-14  Score=114.38  Aligned_cols=111  Identities=21%  Similarity=0.260  Sum_probs=91.0

Q ss_pred             HHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHH
Q 026461           60 QLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL  138 (238)
Q Consensus        60 ~~l~~l~~-~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~  138 (238)
                      .++..+.. ..++.+|||+|||+|..++.++...   .+|+++|+++.+++.+++++..+++.  +++..+|+.+.++  
T Consensus       109 ~~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~g---~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~~~--  181 (254)
T 2nxc_A          109 LALKALARHLRPGDKVLDLGTGSGVLAIAAEKLG---GKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALP--  181 (254)
T ss_dssp             HHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGG--
T ss_pred             HHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhcCc--
Confidence            34444433 3467899999999999999988752   39999999999999999999988875  8999999877432  


Q ss_pred             HhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          139 LKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       139 ~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                            .++||+|+++...+....++..+.++|+|||.+++....
T Consensus       182 ------~~~fD~Vv~n~~~~~~~~~l~~~~~~LkpgG~lils~~~  220 (254)
T 2nxc_A          182 ------FGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             ------GCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ------CCCCCEEEECCcHHHHHHHHHHHHHHcCCCCEEEEEeec
Confidence                  368999999876666778899999999999999997655

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.58  E-value=9.2e-15  Score=121.61  Aligned_cols=113  Identities=18%  Similarity=0.262  Sum_probs=93.2

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHh
Q 026461           61 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK  140 (238)
Q Consensus        61 ~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~  140 (238)
                      ++..+....++.+|||||||+|..+..+++.++...+|+++|+++.+++.+++++...+.  +++++++|+.+..  .  
T Consensus        13 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~--~--   86 (284)
T 3gu3_A           13 LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIE--L--   86 (284)
T ss_dssp             HHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCC--C--
T ss_pred             HHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcC--c--
Confidence            333344456788999999999999999999887568999999999999999999887664  7999999997641  1  


Q ss_pred             cccCCCCeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          141 YSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       141 ~~~~~~~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                          .++||+|++...   ..+...+++.+.+.|+|||.+++.+..
T Consensus        87 ----~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           87 ----NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             ----SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ----CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence                469999999754   345578999999999999999987655

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.58  E-value=1.9e-14  Score=115.56  Aligned_cols=121  Identities=21%  Similarity=0.323  Sum_probs=91.8

Q ss_pred             CcHhHHHH-HHHHH-hhcCCCEEEEEcccccHHHHHHHhhCC----CCCEEEEEeCCchhHHHHHHHHHHcCC----CCc
Q 026461           54 TAPDAGQL-MAMLL-RLVNAKKTIEIGVFTGYSLLLTALTIP----EDGQITAIDVNRETYEIGLPIIKKAGV----DHK  123 (238)
Q Consensus        54 ~~~~~~~~-l~~l~-~~~~~~~vLeiG~G~G~~t~~la~~~~----~~~~v~~iD~~~~~~~~a~~~~~~~~~----~~~  123 (238)
                      ..+..... +..+. ...++.+|||||||+|+.+..+++...    +.++|+++|+++.+++.|++++...++    ..+
T Consensus        62 ~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~  141 (227)
T 2pbf_A           62 SAPHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDN  141 (227)
T ss_dssp             CCHHHHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTT
T ss_pred             CChHHHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCC
Confidence            34444433 44333 355678999999999999999999874    467999999999999999999998873    357


Q ss_pred             EEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          124 INFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       124 v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ++++.+|+.+..+....   ..++||+|+++...+.   +++.+.++|+|||++++.
T Consensus       142 v~~~~~d~~~~~~~~~~---~~~~fD~I~~~~~~~~---~~~~~~~~LkpgG~lv~~  192 (227)
T 2pbf_A          142 FKIIHKNIYQVNEEEKK---ELGLFDAIHVGASASE---LPEILVDLLAENGKLIIP  192 (227)
T ss_dssp             EEEEECCGGGCCHHHHH---HHCCEEEEEECSBBSS---CCHHHHHHEEEEEEEEEE
T ss_pred             EEEEECChHhcccccCc---cCCCcCEEEECCchHH---HHHHHHHhcCCCcEEEEE
Confidence            99999999875311000   0378999999876554   346778999999999885

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.58  E-value=2.5e-14  Score=117.87  Aligned_cols=119  Identities=15%  Similarity=0.265  Sum_probs=96.0

Q ss_pred             HHHHHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH
Q 026461           58 AGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV  134 (238)
Q Consensus        58 ~~~~l~~l~~---~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (238)
                      ...++..++.   ..++.+|||||||+|..+..+++..  ..+|+++|+++.+++.+++++...++.+++++..+|+.+.
T Consensus        46 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  123 (273)
T 3bus_A           46 TDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDL  123 (273)
T ss_dssp             HHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccC
Confidence            3344444443   3466799999999999999999875  4799999999999999999999999888899999998764


Q ss_pred             HHHHHhcccCCCCeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEeccccC
Q 026461          135 LDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWG  185 (238)
Q Consensus       135 l~~~~~~~~~~~~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  185 (238)
                       +      ...++||+|++...   ..+...+++.+.+.|+|||.+++.+....
T Consensus       124 -~------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~  170 (273)
T 3bus_A          124 -P------FEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLL  170 (273)
T ss_dssp             -C------SCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEES
T ss_pred             -C------CCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeecc
Confidence             1      12479999998643   34567889999999999999999876543

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.58  E-value=2.8e-14  Score=118.49  Aligned_cols=105  Identities=15%  Similarity=0.124  Sum_probs=90.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .++.+|||+|||+|..++.++...+ . +|+++|+++.+++.|++++..+++.++++++++|+.+...        .++|
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~-~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~--------~~~f  193 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGK-A-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--------ENIA  193 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTC-C-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------CSCE
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCC-C-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc--------cCCc
Confidence            3578999999999999999999754 2 8999999999999999999999998889999999987643        3799


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEEEecccc
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      |+|+++.+ .....++..+.++|+|||++++.....
T Consensus       194 D~Vi~~~p-~~~~~~l~~~~~~LkpgG~l~~~~~~~  228 (278)
T 2frn_A          194 DRILMGYV-VRTHEFIPKALSIAKDGAIIHYHNTVP  228 (278)
T ss_dssp             EEEEECCC-SSGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             cEEEECCc-hhHHHHHHHHHHHCCCCeEEEEEEeec
Confidence            99999865 344678889999999999999876553

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.58  E-value=4.2e-14  Score=117.87  Aligned_cols=116  Identities=18%  Similarity=0.253  Sum_probs=92.9

Q ss_pred             CcHhHHHHHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecc
Q 026461           54 TAPDAGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE  130 (238)
Q Consensus        54 ~~~~~~~~l~~l~~---~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d  130 (238)
                      ..+....++..++.   ..++.+|||+|||+|..++.++.. + ..+|+++|+++.+++.|++++...++.++++++++|
T Consensus       104 pr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~-~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D  181 (284)
T 1nv8_A          104 PRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-S-DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGE  181 (284)
T ss_dssp             CCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-S-SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESS
T ss_pred             cChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECc
Confidence            34455555555443   235679999999999999999998 5 889999999999999999999999988889999999


Q ss_pred             hhHHHHHHHhcccCCCCe---eEEEEcCCccc----------------------hHHHHHHHH-hccCCCeEEEEe
Q 026461          131 ALSVLDQLLKYSENEGSF---DYAFVDADKDN----------------------YCNYHERLM-KLLKVGGIAVYD  180 (238)
Q Consensus       131 ~~~~l~~~~~~~~~~~~f---D~V~~d~~~~~----------------------~~~~~~~~~-~~L~~gG~lv~~  180 (238)
                      +.+.++         ++|   |+|+++.+...                      -..+++.+. +.|+|||++++.
T Consensus       182 ~~~~~~---------~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e  248 (284)
T 1nv8_A          182 FLEPFK---------EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME  248 (284)
T ss_dssp             TTGGGG---------GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred             chhhcc---------cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence            987432         467   99999843110                      126788999 999999999985

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.57  E-value=2e-14  Score=122.39  Aligned_cols=122  Identities=15%  Similarity=0.199  Sum_probs=92.5

Q ss_pred             ccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC----------CC
Q 026461           52 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG----------VD  121 (238)
Q Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~----------~~  121 (238)
                      ....+.....+...+...++.+|||+|||+|+.+..++..+.+.++|+++|+++.+++.|++++...+          ..
T Consensus        87 ~~~~~~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~  166 (336)
T 2b25_A           87 AITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWP  166 (336)
T ss_dssp             CCCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCC
T ss_pred             cccCHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccC
Confidence            34556655555555567788899999999999999999976446899999999999999999998643          23


Q ss_pred             CcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          122 HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       122 ~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      .++++..+|+.+.++.+.     .++||+|+++...  ...+++.+.+.|+|||.+++.
T Consensus       167 ~~v~~~~~d~~~~~~~~~-----~~~fD~V~~~~~~--~~~~l~~~~~~LkpgG~lv~~  218 (336)
T 2b25_A          167 DNVDFIHKDISGATEDIK-----SLTFDAVALDMLN--PHVTLPVFYPHLKHGGVCAVY  218 (336)
T ss_dssp             CCEEEEESCTTCCC------------EEEEEECSSS--TTTTHHHHGGGEEEEEEEEEE
T ss_pred             CceEEEECChHHcccccC-----CCCeeEEEECCCC--HHHHHHHHHHhcCCCcEEEEE
Confidence            579999999987543331     3689999998542  234788899999999999874

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.57  E-value=7.2e-15  Score=118.96  Aligned_cols=106  Identities=18%  Similarity=0.190  Sum_probs=83.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .++.+|||||||+|..+..++...  ..+|+++|+++.+++.|+++....+  .+++++++|+.+.++.+     ..++|
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~-----~~~~f  129 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTL-----PDGHF  129 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGS-----CTTCE
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcC--CCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhccc-----CCCce
Confidence            456799999999999999997643  2489999999999999999887665  57999999998764333     25799


Q ss_pred             eEEEEcCCc--------cchHHHHHHHHhccCCCeEEEEeccc
Q 026461          149 DYAFVDADK--------DNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       149 D~V~~d~~~--------~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      |+|++|...        .....+++.+.++|||||++++-+..
T Consensus       130 D~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  172 (236)
T 1zx0_A          130 DGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT  172 (236)
T ss_dssp             EEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred             EEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence            999994221        11235688899999999999986654

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.57  E-value=4.9e-14  Score=122.70  Aligned_cols=110  Identities=19%  Similarity=0.279  Sum_probs=93.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCC-CCcEEEEecchhHHHHHHHhcccCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV-DHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ..++++|||+|||+|..++.++...  ..+|+++|+++.+++.|++++..+++ .++++++.+|+.+.++.+...   ..
T Consensus       218 ~~~~~~VLDl~cG~G~~sl~la~~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~---~~  292 (396)
T 3c0k_A          218 YVENKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR---GE  292 (396)
T ss_dssp             HCTTCEEEEESCTTCSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHT---TC
T ss_pred             hhCCCeEEEeeccCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhc---CC
Confidence            3577899999999999999999852  46999999999999999999999998 657999999999987765332   46


Q ss_pred             CeeEEEEcCCc------------cchHHHHHHHHhccCCCeEEEEecc
Q 026461          147 SFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       147 ~fD~V~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      +||+|++|.+.            ..+..++..+.++|+|||++++...
T Consensus       293 ~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  340 (396)
T 3c0k_A          293 KFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC  340 (396)
T ss_dssp             CEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            89999999653            4567788889999999999998654

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.57  E-value=1.2e-14  Score=122.85  Aligned_cols=115  Identities=22%  Similarity=0.355  Sum_probs=93.2

Q ss_pred             HhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHH
Q 026461           56 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL  135 (238)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l  135 (238)
                      +.....+...+...++.+|||||||+|..+..+++..+..++|+++|+++++++.|++++...++.+ +++..+|+.+.+
T Consensus        61 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~-v~~~~~d~~~~~  139 (317)
T 1dl5_A           61 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYYGV  139 (317)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-eEEEECChhhcc
Confidence            3444455555566677899999999999999999986645789999999999999999999988865 999999997753


Q ss_pred             HHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          136 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       136 ~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      +.       .++||+|+++...+...   +.+.+.|+|||++++..
T Consensus       140 ~~-------~~~fD~Iv~~~~~~~~~---~~~~~~LkpgG~lvi~~  175 (317)
T 1dl5_A          140 PE-------FSPYDVIFVTVGVDEVP---ETWFTQLKEGGRVIVPI  175 (317)
T ss_dssp             GG-------GCCEEEEEECSBBSCCC---HHHHHHEEEEEEEEEEB
T ss_pred             cc-------CCCeEEEEEcCCHHHHH---HHHHHhcCCCcEEEEEE
Confidence            32       37899999997655544   56778999999999863

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.57  E-value=2.1e-14  Score=120.20  Aligned_cols=121  Identities=14%  Similarity=0.119  Sum_probs=91.8

Q ss_pred             HhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc-CCCCcEEEEecchhHH
Q 026461           56 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEALSV  134 (238)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~  134 (238)
                      ....+.+..+.. .++.+|||||||+|..+..+++.+++..+|+++|+++.+++.|++++... +...+++++++|+.+.
T Consensus        23 ~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~  101 (299)
T 3g5t_A           23 SDFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDF  101 (299)
T ss_dssp             HHHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCC
T ss_pred             HHHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhC
Confidence            333444443322 36789999999999999999987644889999999999999999999887 4457899999999764


Q ss_pred             HHHHHh-cccCCCCeeEEEEcCCcc--chHHHHHHHHhccCCCeEEEE
Q 026461          135 LDQLLK-YSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       135 l~~~~~-~~~~~~~fD~V~~d~~~~--~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      .  +.. .....++||+|++....+  +...+++.+.+.|+|||.+++
T Consensus       102 ~--~~~~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          102 K--FLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             G--GGCTTTTTSSCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             C--ccccccccCCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEE
Confidence            2  110 000127999999874321  667889999999999999988

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.57  E-value=5e-14  Score=113.79  Aligned_cols=119  Identities=15%  Similarity=0.136  Sum_probs=85.6

Q ss_pred             cHhHHHHHHHHH--hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           55 APDAGQLMAMLL--RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        55 ~~~~~~~l~~l~--~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      +...+.++..+-  ...++.+|||+|||+|+.+.++++.+.+.++|+++|+++.+++...+.....   .++.++.+|+.
T Consensus        59 skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~  135 (232)
T 3id6_C           59 SKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADAR  135 (232)
T ss_dssp             CHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTT
T ss_pred             HHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccc
Confidence            344444444442  2456789999999999999999998766899999999999876554444332   46999999987


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcCCccchHHHHH-HHHhccCCCeEEEEe
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE-RLMKLLKVGGIAVYD  180 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~-~~~~~L~~gG~lv~~  180 (238)
                      ......    ...++||+||+|.........+. .+.+.|||||.+++.
T Consensus       136 ~~~~~~----~~~~~~D~I~~d~a~~~~~~il~~~~~~~LkpGG~lvis  180 (232)
T 3id6_C          136 FPQSYK----SVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLV  180 (232)
T ss_dssp             CGGGTT----TTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cchhhh----ccccceEEEEecCCChhHHHHHHHHHHHhCCCCeEEEEE
Confidence            532110    01468999999977655555544 445599999999986

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.57  E-value=2.5e-14  Score=118.83  Aligned_cols=104  Identities=17%  Similarity=0.200  Sum_probs=88.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      ++.+|||||||+|..+..++..   +.+|+++|+++.+++.+++++...++..+++++++|+.+..+.      ..++||
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------~~~~fD  138 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASH------LETPVD  138 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGG------CSSCEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhh------cCCCce
Confidence            3569999999999999999986   5699999999999999999999988877899999999876422      258999


Q ss_pred             EEEEcCCc---cchHHHHHHHHhccCCCeEEEEecc
Q 026461          150 YAFVDADK---DNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       150 ~V~~d~~~---~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      +|++....   .+...+++.+.++|+|||++++...
T Consensus       139 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  174 (285)
T 4htf_A          139 LILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFY  174 (285)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            99997643   3557899999999999999998654

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.57  E-value=1.7e-14  Score=114.90  Aligned_cols=116  Identities=27%  Similarity=0.322  Sum_probs=92.4

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      ..+.....+..++...++.+|||||||+|..+..++...++..+|+++|+++.+++.+++++...++. ++++..+|+.+
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~  139 (215)
T 2yxe_A           61 SAIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD-NVIVIVGDGTL  139 (215)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEESCGGG
T ss_pred             CcHHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCccc
Confidence            33555555555556667789999999999999999998744689999999999999999999988875 49999999855


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      .++.       .++||+|+++.......   +.+.++|+|||.+++.
T Consensus       140 ~~~~-------~~~fD~v~~~~~~~~~~---~~~~~~L~pgG~lv~~  176 (215)
T 2yxe_A          140 GYEP-------LAPYDRIYTTAAGPKIP---EPLIRQLKDGGKLLMP  176 (215)
T ss_dssp             CCGG-------GCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEE
T ss_pred             CCCC-------CCCeeEEEECCchHHHH---HHHHHHcCCCcEEEEE
Confidence            4321       36899999987655444   4778999999999885

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.57  E-value=2.5e-14  Score=118.85  Aligned_cols=115  Identities=8%  Similarity=0.070  Sum_probs=93.6

Q ss_pred             HHHHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHH
Q 026461           59 GQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL  135 (238)
Q Consensus        59 ~~~l~~l~~---~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l  135 (238)
                      ...+..++.   ..++.+|||||||+|..+..+++..+  .+|+++|+++.+++.+++++...++..++++..+|+.+. 
T Consensus        50 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-  126 (287)
T 1kpg_A           50 IAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF-  126 (287)
T ss_dssp             HHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC-
T ss_pred             HHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC-
Confidence            334444443   34567999999999999999996654  499999999999999999999888878899999998654 


Q ss_pred             HHHHhcccCCCCeeEEEEcCCc-----cchHHHHHHHHhccCCCeEEEEeccccC
Q 026461          136 DQLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLWG  185 (238)
Q Consensus       136 ~~~~~~~~~~~~fD~V~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~  185 (238)
                               .++||+|++....     .....+++.+.++|+|||.+++.+....
T Consensus       127 ---------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  172 (287)
T 1kpg_A          127 ---------DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGL  172 (287)
T ss_dssp             ---------CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred             ---------CCCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence                     3789999987432     4567899999999999999999876543

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.56  E-value=5.5e-14  Score=121.98  Aligned_cols=110  Identities=11%  Similarity=0.197  Sum_probs=90.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCC-cEEEEecchhHHHHHHHhcccCCCC
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      .++++|||+|||+|..++.++...  ..+|+++|+++.+++.|++|++.+++.+ +++++++|+.+.++.+..+   ..+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~g--a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~---~~~  285 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRH---HLT  285 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHT---TCC
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHh---CCC
Confidence            467899999999999999999842  3589999999999999999999999875 7999999999987765432   468


Q ss_pred             eeEEEEcCCcc------------chHHHHHHHHhccCCCeEEEEeccc
Q 026461          148 FDYAFVDADKD------------NYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       148 fD~V~~d~~~~------------~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ||+|++|.+..            .+..++..+.++|+|||++++....
T Consensus       286 fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~  333 (385)
T 2b78_A          286 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA  333 (385)
T ss_dssp             EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            99999986431            1344566778999999999987543

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.56  E-value=3.2e-14  Score=116.56  Aligned_cols=114  Identities=14%  Similarity=0.249  Sum_probs=91.2

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHH
Q 026461           58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ  137 (238)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~  137 (238)
                      ...++. .+...++.+|||||||+|..+..++...   .+|+++|+++.+++.+++++...++. ++++..+|+.+. + 
T Consensus        26 ~~~l~~-~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~l-~-   98 (260)
T 1vl5_A           26 LAKLMQ-IAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQM-P-   98 (260)
T ss_dssp             HHHHHH-HHTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CC-C-
T ss_pred             HHHHHH-HhCCCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHhC-C-
Confidence            333444 3445677899999999999999999875   49999999999999999999888875 699999998764 1 


Q ss_pred             HHhcccCCCCeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          138 LLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       138 ~~~~~~~~~~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                           ...++||+|++...   ..+...+++.+.+.|+|||.+++.+..
T Consensus        99 -----~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~  142 (260)
T 1vl5_A           99 -----FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS  142 (260)
T ss_dssp             -----SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             -----CCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcC
Confidence                 12579999998753   345578899999999999999986544

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.56  E-value=1.6e-14  Score=119.70  Aligned_cols=118  Identities=15%  Similarity=0.144  Sum_probs=96.8

Q ss_pred             cHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH
Q 026461           55 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV  134 (238)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (238)
                      .+...+.+..+....++.+|||+|||+|..++.++...+ .++|+++|+++.+++.|+++++.+++. ++.++++|+.+.
T Consensus       104 ~~~~~e~~~~~~~~~~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d~~~~  181 (272)
T 3a27_A          104 QGNIEERKRMAFISNENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILADNRDV  181 (272)
T ss_dssp             GGGHHHHHHHHTSCCTTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESCGGGC
T ss_pred             CCchHHHHHHHHhcCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECChHHc
Confidence            343444444444455678999999999999999999875 679999999999999999999999885 488999999876


Q ss_pred             HHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          135 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       135 l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                       +.       .++||+|++|.+. ....++..+.+.|+|||++++....
T Consensus       182 -~~-------~~~~D~Vi~d~p~-~~~~~l~~~~~~LkpgG~l~~s~~~  221 (272)
T 3a27_A          182 -EL-------KDVADRVIMGYVH-KTHKFLDKTFEFLKDRGVIHYHETV  221 (272)
T ss_dssp             -CC-------TTCEEEEEECCCS-SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             -Cc-------cCCceEEEECCcc-cHHHHHHHHHHHcCCCCEEEEEEcC
Confidence             32       3689999999764 6678889999999999999986554

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.56  E-value=1.3e-13  Score=127.39  Aligned_cols=161  Identities=11%  Similarity=0.123  Sum_probs=112.5

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc------CCCCcEEEEecchhH
Q 026461           60 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA------GVDHKINFIESEALS  133 (238)
Q Consensus        60 ~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~  133 (238)
                      +.+..++...++.+|||||||+|..+..+++..++..+|+|+|+++.+++.|++++...      ++ .+++++++|+.+
T Consensus       711 e~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqGDa~d  789 (950)
T 3htx_A          711 EYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDGSILE  789 (950)
T ss_dssp             HHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEESCTTS
T ss_pred             HHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEECchHh
Confidence            33444445567889999999999999999987644579999999999999999977643      33 479999999977


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCccch-----HHHHHHHHhccCCCeEEEEeccc------cCcc-----ccCC------
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKDNY-----CNYHERLMKLLKVGGIAVYDNTL------WGGT-----VAVP------  191 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~~~-----~~~~~~~~~~L~~gG~lv~~~~~------~~g~-----~~~~------  191 (238)
                      ...       ..++||+|++....+++     ..+++.+.+.|+|| .+++....      +.+.     ...+      
T Consensus       790 Lp~-------~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~lF~~Lnp~tr~~dPd~~~~~  861 (950)
T 3htx_A          790 FDS-------RLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFNTILQRSTPETQEENNSEPQLP  861 (950)
T ss_dssp             CCT-------TSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGHHHHTCC------------CCS
T ss_pred             CCc-------ccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhhhhhhhcccccccccccccccc
Confidence            522       25899999997654443     34788899999999 66664322      2211     0000      


Q ss_pred             -CCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCe
Q 026461          192 -EEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG  230 (238)
Q Consensus       192 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G  230 (238)
                       .......... .....+.|.+.+..+.++.+.+.++|+|
T Consensus       862 ~fRh~DHrFEW-TReEFr~Wae~LAer~GYsVefvGVGDg  900 (950)
T 3htx_A          862 KFRNHDHKFEW-TREQFNQWASKLGKRHNYSVEFSGVGGS  900 (950)
T ss_dssp             SCSCSSCSCCB-CHHHHHHHHHHHHHHTTEEEEEEEESSC
T ss_pred             cccccCcceee-cHHHHHHHHHHHHHhcCcEEEEEccCCC
Confidence             0000111111 3344667777788888999999999988

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.56  E-value=7.4e-15  Score=123.39  Aligned_cols=109  Identities=15%  Similarity=0.067  Sum_probs=90.0

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++.+|||||||+|..+..++....+..+|+++|+++.+++.+++++...++.++++++++|+.+..  +      .++
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~------~~~  187 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLD--T------REG  187 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCC--C------CSC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCC--c------cCC
Confidence            45678999999999999999973333478999999999999999999999888888999999998751  1      389


Q ss_pred             eeEEEEcCCcc---c---hHHHHHHHHhccCCCeEEEEecccc
Q 026461          148 FDYAFVDADKD---N---YCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       148 fD~V~~d~~~~---~---~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      ||+|++.....   +   ...+++.+.+.|+|||++++.+...
T Consensus       188 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  230 (305)
T 3ocj_A          188 YDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTP  230 (305)
T ss_dssp             EEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred             eEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence            99999875322   2   2347899999999999999987654

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.56  E-value=3.8e-14  Score=117.44  Aligned_cols=118  Identities=21%  Similarity=0.292  Sum_probs=97.0

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      +.+.....+...+...++.+|||+|||+|..+..+++.+.+.++|+++|+++.+++.|++++...++.+++++..+|+.+
T Consensus        96 ~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  175 (277)
T 1o54_A           96 VYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE  175 (277)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG
T ss_pred             cCHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH
Confidence            34444445555556667789999999999999999998655789999999999999999999998886789999999877


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      .++        .++||+|+++.+  ....+++.+.+.|+|||.+++..
T Consensus       176 ~~~--------~~~~D~V~~~~~--~~~~~l~~~~~~L~pgG~l~~~~  213 (277)
T 1o54_A          176 GFD--------EKDVDALFLDVP--DPWNYIDKCWEALKGGGRFATVC  213 (277)
T ss_dssp             CCS--------CCSEEEEEECCS--CGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             ccc--------CCccCEEEECCc--CHHHHHHHHHHHcCCCCEEEEEe
Confidence            622        468999999753  44578889999999999999864

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.56  E-value=3.1e-14  Score=114.48  Aligned_cols=113  Identities=13%  Similarity=0.134  Sum_probs=92.4

Q ss_pred             HHHHHhhc-CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHh
Q 026461           62 MAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK  140 (238)
Q Consensus        62 l~~l~~~~-~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~  140 (238)
                      |..+.... ++.+|+|||||+|+.++.++...+ ..+|+++|+++.+++.|++|++.+|+.+++++..+|..+.+..   
T Consensus        12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~---   87 (230)
T 3lec_A           12 LQKVANYVPKGARLLDVGSDHAYLPIFLLQMGY-CDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEE---   87 (230)
T ss_dssp             HHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTC-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG---
T ss_pred             HHHHHHhCCCCCEEEEECCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccc---
Confidence            34444443 456899999999999999998754 6799999999999999999999999999999999999886432   


Q ss_pred             cccCCCCeeEEEEcC-CccchHHHHHHHHhccCCCeEEEEecc
Q 026461          141 YSENEGSFDYAFVDA-DKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       141 ~~~~~~~fD~V~~d~-~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                          ..+||+|++.+ ......++++...+.|+++|.+++...
T Consensus        88 ----~~~~D~IviaGmGg~lI~~IL~~~~~~l~~~~~lIlqp~  126 (230)
T 3lec_A           88 ----ADNIDTITICGMGGRLIADILNNDIDKLQHVKTLVLQPN  126 (230)
T ss_dssp             ----GGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred             ----ccccCEEEEeCCchHHHHHHHHHHHHHhCcCCEEEEECC
Confidence                23799988754 334567888888889999999999764

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.56  E-value=6.6e-14  Score=114.69  Aligned_cols=126  Identities=9%  Similarity=0.011  Sum_probs=90.7

Q ss_pred             CCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHH----------
Q 026461           48 PWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK----------  117 (238)
Q Consensus        48 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~----------  117 (238)
                      .+......+...+++..+....++.+|||+|||+|..+.+|++.   +.+|+|||+|+.+++.|++....          
T Consensus        46 ~~~~~~~~~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~  122 (252)
T 2gb4_A           46 SFHQEQGHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADR---GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEI  122 (252)
T ss_dssp             TTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CcccCCCCHHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHhccccccccccccc
Confidence            34334455555555555543346789999999999999999985   46999999999999999775431          


Q ss_pred             c------CCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCC-----ccchHHHHHHHHhccCCCeEEEEecc
Q 026461          118 A------GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       118 ~------~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      .      ....+++++++|+.+....      ..++||+|+....     ......+++.+.++|+|||++++...
T Consensus       123 ~~~~~~~~~~~~i~~~~~D~~~l~~~------~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~  192 (252)
T 2gb4_A          123 AGAKVFKSSSGSISLYCCSIFDLPRA------NIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVL  192 (252)
T ss_dssp             TTCEEEEETTSSEEEEESCTTTGGGG------CCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccccccccCCCceEEEECccccCCcc------cCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEE
Confidence            0      0124699999999876321      1279999996532     23345789999999999999865433

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.56  E-value=1.3e-14  Score=115.01  Aligned_cols=116  Identities=10%  Similarity=0.026  Sum_probs=84.5

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC-----------CCC
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG-----------VDH  122 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~-----------~~~  122 (238)
                      ..+...+++..+ ...++.+|||+|||+|..+.+|++.   +.+|+|+|+|+.+++.|++......           ...
T Consensus         7 ~~~~l~~~~~~l-~~~~~~~vLD~GCG~G~~~~~la~~---g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~   82 (203)
T 1pjz_A            7 VNKDLQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAP   82 (203)
T ss_dssp             STHHHHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECS
T ss_pred             CCHHHHHHHHhc-ccCCCCEEEEeCCCCcHhHHHHHHC---CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCC
Confidence            445455555443 2346789999999999999999986   4699999999999999998754210           124


Q ss_pred             cEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCc-----cchHHHHHHHHhccCCCeEEEE
Q 026461          123 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       123 ~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      +++++++|+.+....-      .++||+|+.....     .....+++.+.++|||||.+++
T Consensus        83 ~v~~~~~d~~~l~~~~------~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l  138 (203)
T 1pjz_A           83 GIEIWCGDFFALTARD------IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLL  138 (203)
T ss_dssp             SSEEEEECCSSSTHHH------HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEE
T ss_pred             ccEEEECccccCCccc------CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            6999999998763221      1689999975432     2234578999999999998443

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.56  E-value=3.4e-14  Score=119.89  Aligned_cols=115  Identities=10%  Similarity=0.109  Sum_probs=94.3

Q ss_pred             HHHHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHH
Q 026461           59 GQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL  135 (238)
Q Consensus        59 ~~~l~~l~~---~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l  135 (238)
                      ...+..++.   ..++.+|||||||+|..+..+++..  +.+|+++|+++.+++.+++++...++.+++++..+|+.+. 
T Consensus        76 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-  152 (318)
T 2fk8_A           76 YAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF-  152 (318)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC-
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC-
Confidence            344444444   3456799999999999999999875  3599999999999999999999988888899999998654 


Q ss_pred             HHHHhcccCCCCeeEEEEcCCc-----cchHHHHHHHHhccCCCeEEEEeccccC
Q 026461          136 DQLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLWG  185 (238)
Q Consensus       136 ~~~~~~~~~~~~fD~V~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~  185 (238)
                               +++||+|++....     .....+++.+.++|+|||.+++.+....
T Consensus       153 ---------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  198 (318)
T 2fk8_A          153 ---------AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSY  198 (318)
T ss_dssp             ---------CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECC
T ss_pred             ---------CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence                     3789999987432     4567899999999999999999776543

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.55  E-value=3.9e-14  Score=123.36  Aligned_cols=109  Identities=23%  Similarity=0.335  Sum_probs=92.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      ++++|||+|||+|..++.++.. + ..+|+++|+++.+++.|++++..+++.++++++.+|+.+.++.+...   .++||
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~-g-~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~---~~~fD  291 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA-G-ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKK---GEKFD  291 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHT---TCCEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhh---CCCCC
Confidence            6789999999999999999985 2 46999999999999999999999998768999999999887765322   46899


Q ss_pred             EEEEcCCc------------cchHHHHHHHHhccCCCeEEEEeccc
Q 026461          150 YAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       150 ~V~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      +|++|.+.            ..+..++..+.++|+|||++++....
T Consensus       292 ~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  337 (396)
T 2as0_A          292 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  337 (396)
T ss_dssp             EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            99999754            34567888889999999988876543

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.55  E-value=4.6e-14  Score=117.82  Aligned_cols=109  Identities=13%  Similarity=0.184  Sum_probs=91.8

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ...++.+|||||||+|..+..+++.+  +.+|+++|+++.+++.+++++...++.++++++.+|+.+. +      ...+
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~------~~~~  149 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-P------CEDN  149 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-S------SCTT
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC-C------CCCC
Confidence            44567899999999999999999875  3599999999999999999999999888899999998764 1      1257


Q ss_pred             CeeEEEEcCCc---cchHHHHHHHHhccCCCeEEEEecccc
Q 026461          147 SFDYAFVDADK---DNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       147 ~fD~V~~d~~~---~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      +||+|++....   .+...+++.+.+.|+|||.+++.+...
T Consensus       150 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  190 (297)
T 2o57_A          150 SYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMK  190 (297)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence            99999987543   345788999999999999999987654

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.55  E-value=3.1e-14  Score=117.62  Aligned_cols=108  Identities=26%  Similarity=0.314  Sum_probs=91.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++.+|||||||+|..+..++...| ..+|+++|+++.+++.+++++...+.. +++++.+|+.+..       ...++
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~-------~~~~~  105 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNP-DAEITSIDISPESLEKARENTEKNGIK-NVKFLQANIFSLP-------FEDSS  105 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGCC-------SCTTC
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEcccccCC-------CCCCC
Confidence            45678999999999999999999876 789999999999999999999988875 5999999987642       12579


Q ss_pred             eeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEecccc
Q 026461          148 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       148 fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      ||+|++...   ..+...+++.+.++|+|||++++.+..+
T Consensus       106 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  145 (276)
T 3mgg_A          106 FDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDH  145 (276)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECG
T ss_pred             eeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence            999998753   3455788999999999999999976544

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.55  E-value=7.8e-15  Score=118.25  Aligned_cols=105  Identities=17%  Similarity=0.226  Sum_probs=86.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++.+|||||||+|..+..++...+ ..+|+++|+++.+++.+++++...+   +++++++|+.+...        .++
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~--------~~~  109 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKYP-EATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDF--------EEK  109 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCC--------CSC
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCC--------CCC
Confidence            34668999999999999999999986 7899999999999999999875543   79999999876521        379


Q ss_pred             eeEEEEcCCccch-----HHHHHHHHhccCCCeEEEEecccc
Q 026461          148 FDYAFVDADKDNY-----CNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       148 fD~V~~d~~~~~~-----~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      ||+|++.......     ..+++.+.+.|+|||.+++.+...
T Consensus       110 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  151 (234)
T 3dtn_A          110 YDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVH  151 (234)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence            9999998643332     248899999999999999877543

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.55  E-value=7.2e-14  Score=113.24  Aligned_cols=116  Identities=17%  Similarity=0.211  Sum_probs=93.7

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHH
Q 026461           58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ  137 (238)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~  137 (238)
                      ....+..+....++.+|||||||+|..+..++...   .+|+++|+++.+++.+++++...++. +++++.+|+.+. + 
T Consensus         9 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~-~-   82 (239)
T 1xxl_A            9 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESL-P-   82 (239)
T ss_dssp             HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBC-C-
T ss_pred             CcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEecccccC-C-
Confidence            33344445567788899999999999999999864   49999999999999999999888874 699999998664 1 


Q ss_pred             HHhcccCCCCeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEecccc
Q 026461          138 LLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       138 ~~~~~~~~~~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                           ...++||+|++...   ..+...+++.+.+.|+|||.+++.+...
T Consensus        83 -----~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  127 (239)
T 1xxl_A           83 -----FPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA  127 (239)
T ss_dssp             -----SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             -----CCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence                 12579999998753   3456788999999999999999866543

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.55  E-value=5.3e-14  Score=114.90  Aligned_cols=118  Identities=19%  Similarity=0.178  Sum_probs=94.7

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc-CCCCcEEEEecchh
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEAL  132 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~v~~~~~d~~  132 (238)
                      +.+.....+...+...++.+|||+|||+|..+..++..+.+.++|+++|+++.+++.+++++... + ..++++..+|+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~  158 (258)
T 2pwy_A           80 TYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLE  158 (258)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGG
T ss_pred             ccchHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchh
Confidence            44444444444556667789999999999999999998544789999999999999999999887 7 467999999987


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      +.  .+     ..++||+|+++..  ....+++.+.+.|+|||.+++..
T Consensus       159 ~~--~~-----~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~  198 (258)
T 2pwy_A          159 EA--EL-----EEAAYDGVALDLM--EPWKVLEKAALALKPDRFLVAYL  198 (258)
T ss_dssp             GC--CC-----CTTCEEEEEEESS--CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             hc--CC-----CCCCcCEEEECCc--CHHHHHHHHHHhCCCCCEEEEEe
Confidence            65  11     1468999999753  44578899999999999998854

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.54  E-value=2.3e-13  Score=117.14  Aligned_cols=155  Identities=16%  Similarity=0.185  Sum_probs=103.8

Q ss_pred             cCCCEEEEEccc------ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHh
Q 026461           69 VNAKKTIEIGVF------TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLK  140 (238)
Q Consensus        69 ~~~~~vLeiG~G------~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~  140 (238)
                      .++.+|||||||      +|+.++.++..+.+.++|+++|+++.+.         . ...+++|+++|+.+.  ...+..
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~-~~~rI~fv~GDa~dlpf~~~l~~  284 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------V-DELRIRTIQGDQNDAEFLDRIAR  284 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------G-CBTTEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------h-cCCCcEEEEecccccchhhhhhc
Confidence            367899999999      6777777776542378999999999972         1 135799999999764  222211


Q ss_pred             cccCCCCeeEEEEcCCc--cchHHHHHHHHhccCCCeEEEEeccccCcc--ccCCCCCCCCCcccchHHHHHHHHHHhhc
Q 026461          141 YSENEGSFDYAFVDADK--DNYCNYHERLMKLLKVGGIAVYDNTLWGGT--VAVPEEQVPDHFRGSSRQAILDLNRSLAD  216 (238)
Q Consensus       141 ~~~~~~~fD~V~~d~~~--~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  216 (238)
                      .   .++||+|+++..+  .+....|+.++++|||||++++.|+.+.-.  ......+ ....+. ....++.+...+..
T Consensus       285 ~---d~sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~-~~~~~t-ii~~lk~l~D~l~~  359 (419)
T 3sso_A          285 R---YGPFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADP-QECSGT-SLGLLKSLIDAIQH  359 (419)
T ss_dssp             H---HCCEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSST-TCCTTS-HHHHHHHHHHHHTG
T ss_pred             c---cCCccEEEECCcccchhHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccC-CcchhH-HHHHHHHHHHHhcc
Confidence            1   3799999998643  345678999999999999999999873211  1111100 111222 66667777666553


Q ss_pred             C---------CCe---eEEeeecCCeeEEEEEcC
Q 026461          217 D---------PRV---QLSHVALGDGITICRRIF  238 (238)
Q Consensus       217 ~---------~~~---~~~~lp~~~G~~i~~~~~  238 (238)
                      .         |.+   .+.-+.+=+++.++.|.+
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~h~y~~i~~~~kg~  393 (419)
T 3sso_A          360 QELPSDPNRSPGYVDRNIVGLHVYHNVAFVEKGR  393 (419)
T ss_dssp             GGSCCCTTCCCCHHHHHEEEEEEETTEEEEEESC
T ss_pred             cccCCCcCCCCCccccceeEEEecCcEEEEEecc
Confidence            2         122   255677788888888753

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.54  E-value=3.6e-15  Score=120.91  Aligned_cols=113  Identities=15%  Similarity=0.151  Sum_probs=90.5

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHH
Q 026461           58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ  137 (238)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~  137 (238)
                      ...++..+....++.+|||+|||+|..+..++..   ..+|+++|+++.+++.|++++...++.++++++++|+.+..+ 
T Consensus        66 ~~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-  141 (241)
T 3gdh_A           66 AEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALT---GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS-  141 (241)
T ss_dssp             HHHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG-
T ss_pred             HHHHHHHhhhccCCCEEEECccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc-
Confidence            3444445555557889999999999999999985   479999999999999999999999987789999999987642 


Q ss_pred             HHhcccCCCCeeEEEEcCCccch---HHHHHHHHhccCCCeEEEEec
Q 026461          138 LLKYSENEGSFDYAFVDADKDNY---CNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       138 ~~~~~~~~~~fD~V~~d~~~~~~---~~~~~~~~~~L~~gG~lv~~~  181 (238)
                             .++||+|+++.+....   ...+..+.++|+|||+++++.
T Consensus       142 -------~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~~  181 (241)
T 3gdh_A          142 -------FLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRL  181 (241)
T ss_dssp             -------GCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHHH
T ss_pred             -------cCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHHH
Confidence                   4799999998654332   224445678999999977754

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.54  E-value=4.4e-14  Score=114.01  Aligned_cols=103  Identities=12%  Similarity=0.113  Sum_probs=85.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      ++.+|||||||+|..+..++..   ..+|+++|+++.+++.+++++...+...+++++++|+.+..+        .++||
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~fD  134 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASP---ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRP--------TELFD  134 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBT---TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCC--------SSCEE
T ss_pred             CCCCEEEeCCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCC--------CCCee
Confidence            4569999999999999999862   679999999999999999998776656779999999977521        46999


Q ss_pred             EEEEcCC-----ccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          150 YAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       150 ~V~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      +|++...     ......+++.+.++|+|||.+++....
T Consensus       135 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  173 (235)
T 3lcc_A          135 LIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYP  173 (235)
T ss_dssp             EEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEec
Confidence            9998643     225678899999999999999986544

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.54  E-value=3e-14  Score=116.13  Aligned_cols=106  Identities=16%  Similarity=0.199  Sum_probs=86.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc--------CCCCcEEEEecchhHHHHHHHh
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--------GVDHKINFIESEALSVLDQLLK  140 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--------~~~~~v~~~~~d~~~~l~~~~~  140 (238)
                      .++.+|||||||+|..++.++...+ ..+|+|+|+++.+++.+++++...        ++ .+++++.+|+.+.++..  
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~l~~~--  123 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFP-EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKFLPNF--  123 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHST-TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSCGGGT--
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCC-CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHHHHHh--
Confidence            3567899999999999999999876 789999999999999999998876        66 46999999998755432  


Q ss_pred             cccCCCCeeEEEEcCCccc-----------hHHHHHHHHhccCCCeEEEEe
Q 026461          141 YSENEGSFDYAFVDADKDN-----------YCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       141 ~~~~~~~fD~V~~d~~~~~-----------~~~~~~~~~~~L~~gG~lv~~  180 (238)
                        ...+.+|.|++..+...           ...++..+.++|+|||++++.
T Consensus       124 --~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~  172 (246)
T 2vdv_E          124 --FEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI  172 (246)
T ss_dssp             --SCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             --ccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence              12578999987643222           158899999999999998883

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.54  E-value=2.8e-14  Score=120.02  Aligned_cols=106  Identities=15%  Similarity=0.198  Sum_probs=85.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHH---cCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK---AGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~---~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      .++++|||||||+|..+..+++..+ ..+|+++|+++.+++.+++++..   .....+++++.+|+.+.+...     ..
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~-----~~  167 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGT-VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQT-----PD  167 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSS-----CT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhc-----cC
Confidence            5678999999999999999998644 67999999999999999998743   222367999999998875431     14


Q ss_pred             CCeeEEEEcCCccch-------HHHHHHHHhccCCCeEEEEe
Q 026461          146 GSFDYAFVDADKDNY-------CNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~-------~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ++||+|++|......       ..+++.+.+.|+|||++++.
T Consensus       168 ~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  209 (304)
T 3bwc_A          168 NTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQ  209 (304)
T ss_dssp             TCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEE
T ss_pred             CceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            789999998643221       58899999999999999986

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.54  E-value=6.8e-14  Score=122.45  Aligned_cols=115  Identities=14%  Similarity=0.162  Sum_probs=90.7

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHH-------HHHHHHcCCC-CcEEEEecchhHH--
Q 026461           65 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG-------LPIIKKAGVD-HKINFIESEALSV--  134 (238)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a-------~~~~~~~~~~-~~v~~~~~d~~~~--  134 (238)
                      .+...++.+|||||||+|..++.++...+ ..+|+|+|+++.+++.|       ++++...|+. .+++++++|....  
T Consensus       237 ~l~l~~g~~VLDLGCGsG~la~~LA~~~g-~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~  315 (433)
T 1u2z_A          237 QCQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNN  315 (433)
T ss_dssp             HTTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCH
T ss_pred             hcCCCCCCEEEEeCCCcCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccccc
Confidence            34556778999999999999999999765 56899999999999998       8898888854 6799999865421  


Q ss_pred             -HHHHHhcccCCCCeeEEEEcCC--ccchHHHHHHHHhccCCCeEEEEeccccCc
Q 026461          135 -LDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  186 (238)
Q Consensus       135 -l~~~~~~~~~~~~fD~V~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (238)
                       ++..      .++||+|++...  .......+..+.+.|+|||.+++.+.+.+.
T Consensus       316 ~~~~~------~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d~f~p~  364 (433)
T 1u2z_A          316 RVAEL------IPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRSL  364 (433)
T ss_dssp             HHHHH------GGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCSSCT
T ss_pred             ccccc------cCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEeeccCCc
Confidence             2222      368999998632  345667788999999999999998766443

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.54  E-value=4.2e-14  Score=122.61  Aligned_cols=107  Identities=23%  Similarity=0.336  Sum_probs=91.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      ++.+|||+|||+|..++.++..   ..+|+++|+++.+++.|++++..+++.+ ++++.+|+.+.++.+...   ..+||
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~~~---~~~fD  281 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKE---GERFD  281 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHT---TCCEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHHHHHHHhc---CCCee
Confidence            6679999999999999999987   4689999999999999999999999866 999999999987765332   47899


Q ss_pred             EEEEcCCc------------cchHHHHHHHHhccCCCeEEEEeccc
Q 026461          150 YAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       150 ~V~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      +|++|.+.            ..+..++..+.++|+|||++++....
T Consensus       282 ~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  327 (382)
T 1wxx_A          282 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  327 (382)
T ss_dssp             EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            99999754            33567888889999999999987543

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.54  E-value=4.9e-13  Score=115.50  Aligned_cols=115  Identities=12%  Similarity=0.037  Sum_probs=89.0

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHH-------HHcCCC-CcEEEEecchhHHHHH
Q 026461           66 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII-------KKAGVD-HKINFIESEALSVLDQ  137 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~-------~~~~~~-~~v~~~~~d~~~~l~~  137 (238)
                      +...+..+|||||||+|..++.++...+ ..+|+|||+++.+++.|+++.       ...|+. .+++|+++|+.+..-.
T Consensus       169 l~l~~gd~VLDLGCGtG~l~l~lA~~~g-~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~  247 (438)
T 3uwp_A          169 IKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWR  247 (438)
T ss_dssp             HCCCTTCEEEEESCTTSHHHHHHHHHCC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHH
T ss_pred             cCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccc
Confidence            3456778999999999999999998765 567999999999999998764       345653 6899999999875211


Q ss_pred             HHhcccCCCCeeEEEEcCC--ccchHHHHHHHHhccCCCeEEEEeccccCc
Q 026461          138 LLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  186 (238)
Q Consensus       138 ~~~~~~~~~~fD~V~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (238)
                      .  .   -..||+||++..  .......+.++++.|||||.||+.+.+.+.
T Consensus       248 d--~---~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p~  293 (438)
T 3uwp_A          248 E--R---IANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPL  293 (438)
T ss_dssp             H--H---HHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESSCSSCT
T ss_pred             c--c---cCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEeecccCC
Confidence            0  0   147999998753  344566778888999999999998776543

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.54  E-value=4.2e-14  Score=113.46  Aligned_cols=104  Identities=18%  Similarity=0.246  Sum_probs=85.0

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCC----CCcEEEEecchhHHHHHHHhccc
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV----DHKINFIESEALSVLDQLLKYSE  143 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~l~~~~~~~~  143 (238)
                      ..++.+|||||||+|..+..+++.+.+.++|+++|+++.+++.+++++...+.    .++++++.+|+.+....      
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~------  148 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE------  148 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG------
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCccc------
Confidence            45677999999999999999998865467999999999999999999988764    35799999998754221      


Q ss_pred             CCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                       .++||+|+++......   ++.+.+.|+|||++++.-
T Consensus       149 -~~~fD~i~~~~~~~~~---~~~~~~~LkpgG~lv~~~  182 (226)
T 1i1n_A          149 -EAPYDAIHVGAAAPVV---PQALIDQLKPGGRLILPV  182 (226)
T ss_dssp             -GCCEEEEEECSBBSSC---CHHHHHTEEEEEEEEEEE
T ss_pred             -CCCcCEEEECCchHHH---HHHHHHhcCCCcEEEEEE
Confidence             3689999998765433   467789999999999863

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.54  E-value=3.8e-14  Score=114.65  Aligned_cols=115  Identities=21%  Similarity=0.319  Sum_probs=91.1

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      ..+.....+..++...++.+|||||||+|+.+..+++..+  .+|+++|+++.+++.+++++...++.+ +++..+|+..
T Consensus        75 ~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~  151 (235)
T 1jg1_A           75 SAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKN-VHVILGDGSK  151 (235)
T ss_dssp             CCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGG
T ss_pred             ccHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEECCccc
Confidence            4455555555566666778999999999999999999865  789999999999999999999988755 9999999733


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      .++.       ..+||+|+++.......   +.+.+.|+|||.+++.-
T Consensus       152 ~~~~-------~~~fD~Ii~~~~~~~~~---~~~~~~L~pgG~lvi~~  189 (235)
T 1jg1_A          152 GFPP-------KAPYDVIIVTAGAPKIP---EPLIEQLKIGGKLIIPV  189 (235)
T ss_dssp             CCGG-------GCCEEEEEECSBBSSCC---HHHHHTEEEEEEEEEEE
T ss_pred             CCCC-------CCCccEEEECCcHHHHH---HHHHHhcCCCcEEEEEE
Confidence            3221       24699999987655443   36788999999998853

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.54  E-value=5.1e-14  Score=116.56  Aligned_cols=121  Identities=17%  Similarity=0.172  Sum_probs=96.6

Q ss_pred             ccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc-C-CCCcEEEEec
Q 026461           52 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-G-VDHKINFIES  129 (238)
Q Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~-~~~~v~~~~~  129 (238)
                      ..+.+.....+...+...++.+|||+|||+|..+..++..+.+.++|+++|+++.+++.|++++... + +.+++++..+
T Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~  160 (280)
T 1i9g_A           81 QVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS  160 (280)
T ss_dssp             CCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECS
T ss_pred             eeecHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEEC
Confidence            3345555555555556667789999999999999999997654789999999999999999999887 5 4567999999


Q ss_pred             chhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          130 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       130 d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      |+.+..  +     ..++||+|+++..  ....+++.+.+.|+|||.+++..
T Consensus       161 d~~~~~--~-----~~~~~D~v~~~~~--~~~~~l~~~~~~L~pgG~l~~~~  203 (280)
T 1i9g_A          161 DLADSE--L-----PDGSVDRAVLDML--APWEVLDAVSRLLVAGGVLMVYV  203 (280)
T ss_dssp             CGGGCC--C-----CTTCEEEEEEESS--CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             chHhcC--C-----CCCceeEEEECCc--CHHHHHHHHHHhCCCCCEEEEEe
Confidence            987751  1     1468999999754  44578899999999999999854

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.54  E-value=4.5e-14  Score=112.57  Aligned_cols=104  Identities=16%  Similarity=0.157  Sum_probs=80.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .++.+|||+|||+|..+..++...+ .++|+++|+++.+++.+.+..+..   +++.++.+|+.+.....    +..++|
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~----~~~~~f  127 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYS----GIVEKV  127 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTT----TTCCCE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhc----ccccce
Confidence            4567999999999999999999887 789999999999887776655543   36888998886531100    013789


Q ss_pred             eEEEEcCCccch-HHHHHHHHhccCCCeEEEEe
Q 026461          149 DYAFVDADKDNY-CNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       149 D~V~~d~~~~~~-~~~~~~~~~~L~~gG~lv~~  180 (238)
                      |+|+++...+.. ..+++++.+.|||||.+++.
T Consensus       128 D~V~~~~~~~~~~~~~l~~~~r~LkpgG~l~i~  160 (210)
T 1nt2_A          128 DLIYQDIAQKNQIEILKANAEFFLKEKGEVVIM  160 (210)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEeccChhHHHHHHHHHHHHhCCCCEEEEE
Confidence            999998543332 33588999999999999986

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.53  E-value=1e-12  Score=102.80  Aligned_cols=106  Identities=15%  Similarity=0.172  Sum_probs=86.9

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           66 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      +...++.+|||+|||+|..+..++..   +.+|+++|+++.+++.+++++...++. +++++.+|+.+..       . .
T Consensus        28 ~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~-------~-~   95 (199)
T 2xvm_A           28 VKVVKPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIENLD-NLHTRVVDLNNLT-------F-D   95 (199)
T ss_dssp             TTTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECCGGGCC-------C-C
T ss_pred             hhccCCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCCCC-CcEEEEcchhhCC-------C-C
Confidence            34557789999999999999999986   469999999999999999999888874 5999999987641       1 4


Q ss_pred             CCeeEEEEcCCc-----cchHHHHHHHHhccCCCeEEEEeccc
Q 026461          146 GSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       146 ~~fD~V~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ++||+|++....     .....+++.+.+.|+|||.+++-...
T Consensus        96 ~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  138 (199)
T 2xvm_A           96 RQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAM  138 (199)
T ss_dssp             CCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             CCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEee
Confidence            799999987532     25678899999999999997764433

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.53  E-value=3.5e-14  Score=119.67  Aligned_cols=108  Identities=13%  Similarity=0.245  Sum_probs=90.5

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++.+|||||||+|..+..+++..  +.+|+++|+++.+++.|++++...++.++++++.+|+.+..  +     ..++
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~-----~~~~  185 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP--F-----DKGA  185 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--C-----CTTC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCC--C-----CCCC
Confidence            3456799999999999999999874  46999999999999999999999998888999999987641  1     2579


Q ss_pred             eeEEEEcCCcc--chHHHHHHHHhccCCCeEEEEecccc
Q 026461          148 FDYAFVDADKD--NYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       148 fD~V~~d~~~~--~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      ||+|++.....  ....+++.+.++|+|||.+++.+...
T Consensus       186 fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  224 (312)
T 3vc1_A          186 VTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCW  224 (312)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             EeEEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEEccc
Confidence            99999864321  36889999999999999999876544

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.53  E-value=3.7e-13  Score=111.75  Aligned_cols=103  Identities=14%  Similarity=0.184  Sum_probs=86.2

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ...++.+|||+|||+|..+..++..   +.+|+++|+++.+++.+++++...++  +++++.+|+.+...        .+
T Consensus       117 ~~~~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~--------~~  183 (286)
T 3m70_A          117 KIISPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI--------QE  183 (286)
T ss_dssp             HHSCSCEEEEESCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC--------CS
T ss_pred             hccCCCcEEEECCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc--------cC
Confidence            3447889999999999999999986   46999999999999999999998886  69999999877521        47


Q ss_pred             CeeEEEEcCC-----ccchHHHHHHHHhccCCCeEEEEecc
Q 026461          147 SFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       147 ~fD~V~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      +||+|++...     ......+++.+.++|+|||++++...
T Consensus       184 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  224 (286)
T 3m70_A          184 NYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAA  224 (286)
T ss_dssp             CEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            9999999753     24456899999999999999776443

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.53  E-value=1e-13  Score=120.43  Aligned_cols=103  Identities=18%  Similarity=0.251  Sum_probs=85.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      ++++|||+|||+|..++.++..   +.+|+++|+|+.+++.+++|+..+++..  ++.++|+.+.++.+      .+.||
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~---ga~V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~~------~~~fD  282 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARK---GAYALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPTLRGL------EGPFH  282 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHHHHTC------CCCEE
T ss_pred             CCCeEEEcccchhHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHHHHHh------cCCCC
Confidence            3789999999999999999985   3459999999999999999999999865  46699999887654      24599


Q ss_pred             EEEEcCCc------------cchHHHHHHHHhccCCCeEEEEeccc
Q 026461          150 YAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       150 ~V~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      +|++|.+.            ..+..++..+.++|+|||++++..+.
T Consensus       283 ~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s  328 (393)
T 4dmg_A          283 HVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS  328 (393)
T ss_dssp             EEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            99999753            23467888889999999999965443

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.53  E-value=8.5e-14  Score=117.22  Aligned_cols=127  Identities=18%  Similarity=0.143  Sum_probs=96.3

Q ss_pred             ccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461           52 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA  131 (238)
Q Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (238)
                      ..++.....++..++...++.+|||+|||+|+.|.++++.+++.++|+++|+++.+++.+++++++.|+. +++++++|+
T Consensus        84 ~~~Qd~~s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~-~v~~~~~D~  162 (309)
T 2b9e_A           84 LILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDF  162 (309)
T ss_dssp             EEECCTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCG
T ss_pred             EEEECHHHHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCh
Confidence            3455666667777777777889999999999999999998765789999999999999999999999984 599999998


Q ss_pred             hHHHHHHHhcccCCCCeeEEEEcCCccch---------------------------HHHHHHHHhccCCCeEEEEecccc
Q 026461          132 LSVLDQLLKYSENEGSFDYAFVDADKDNY---------------------------CNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       132 ~~~l~~~~~~~~~~~~fD~V~~d~~~~~~---------------------------~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      .+..+...    ...+||.|++|.+....                           ..+++.++++++ ||.|+...+..
T Consensus       163 ~~~~~~~~----~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~  237 (309)
T 2b9e_A          163 LAVSPSDP----RYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL  237 (309)
T ss_dssp             GGSCTTCG----GGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred             HhcCcccc----ccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence            77532110    01579999998543110                           124555666776 89999776543

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.53  E-value=2.8e-14  Score=123.32  Aligned_cols=105  Identities=12%  Similarity=0.087  Sum_probs=87.1

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCC--cEEEEecchhHHHHHHHhcccC
Q 026461           67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH--KINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~--~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      ....+.+|||+|||+|..++.++...| ..+|+++|+++.+++.+++++..+++.+  +++++.+|+.+.++        
T Consensus       219 ~~~~~~~VLDlGcG~G~~s~~la~~~p-~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~--------  289 (375)
T 4dcm_A          219 PENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--------  289 (375)
T ss_dssp             CCSCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCC--------
T ss_pred             cccCCCeEEEEeCcchHHHHHHHHHCC-CCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCC--------
Confidence            344457999999999999999999876 7899999999999999999999988753  58889999877422        


Q ss_pred             CCCeeEEEEcCCcc--------chHHHHHHHHhccCCCeEEEEe
Q 026461          145 EGSFDYAFVDADKD--------NYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       145 ~~~fD~V~~d~~~~--------~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      .++||+|+++.+..        ....+++.+.+.|+|||.+++.
T Consensus       290 ~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv  333 (375)
T 4dcm_A          290 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV  333 (375)
T ss_dssp             TTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            47999999985422        2246789999999999998884

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.53  E-value=4.1e-14  Score=114.69  Aligned_cols=113  Identities=11%  Similarity=0.142  Sum_probs=91.9

Q ss_pred             HHHHHhhc-CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHh
Q 026461           62 MAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK  140 (238)
Q Consensus        62 l~~l~~~~-~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~  140 (238)
                      |..+.... ++.+|||||||+|+.++.++...+ ..+|+++|+++.+++.|++|+..+|+.+++++..+|..+.+..   
T Consensus        12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~---   87 (244)
T 3gnl_A           12 LEKVASYITKNERIADIGSDHAYLPCFAVKNQT-ASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEK---   87 (244)
T ss_dssp             HHHHHTTCCSSEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG---
T ss_pred             HHHHHHhCCCCCEEEEECCccHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCc---
Confidence            33444433 456899999999999999998754 6799999999999999999999999988999999999876431   


Q ss_pred             cccCCCCeeEEEEcC-CccchHHHHHHHHhccCCCeEEEEecc
Q 026461          141 YSENEGSFDYAFVDA-DKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       141 ~~~~~~~fD~V~~d~-~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                          ..+||+|++.+ .......+++...+.|++++.+|+...
T Consensus        88 ----~~~~D~IviagmGg~lI~~IL~~~~~~L~~~~~lIlq~~  126 (244)
T 3gnl_A           88 ----KDAIDTIVIAGMGGTLIRTILEEGAAKLAGVTKLILQPN  126 (244)
T ss_dssp             ----GGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred             ----cccccEEEEeCCchHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence                13699988753 344567888888899999999998754

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.53  E-value=1.6e-14  Score=115.02  Aligned_cols=109  Identities=21%  Similarity=0.218  Sum_probs=86.7

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHH
Q 026461           60 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL  139 (238)
Q Consensus        60 ~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~  139 (238)
                      .++..+....++.+|||+|||+|..+..++...   .+|+++|+++.+++.+++++...+   +++++++|+.+..+   
T Consensus        41 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~---  111 (216)
T 3ofk_A           41 QLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFST---  111 (216)
T ss_dssp             HHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCCC---
T ss_pred             HHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCCC---
Confidence            444444445566799999999999999999863   599999999999999999876533   69999999977631   


Q ss_pred             hcccCCCCeeEEEEcCCccc------hHHHHHHHHhccCCCeEEEEecc
Q 026461          140 KYSENEGSFDYAFVDADKDN------YCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       140 ~~~~~~~~fD~V~~d~~~~~------~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                           .++||+|++.....+      ...+++.+.++|+|||++++...
T Consensus       112 -----~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  155 (216)
T 3ofk_A          112 -----AELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA  155 (216)
T ss_dssp             -----SCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             -----CCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence                 589999999754322      24668999999999999998653

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.53  E-value=3e-14  Score=114.44  Aligned_cols=104  Identities=18%  Similarity=0.218  Sum_probs=84.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHH--HHHHhcccCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL--DQLLKYSENE  145 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l--~~~~~~~~~~  145 (238)
                      ..++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.+++++...   .+++++.+|+.+..  ..+      .
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~------~  141 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRAL------V  141 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTT------C
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhcc------c
Confidence            345679999999999999999988654689999999999999999887654   57999999987632  111      3


Q ss_pred             CCeeEEEEcCCccchH-HHHHHHHhccCCCeEEEEe
Q 026461          146 GSFDYAFVDADKDNYC-NYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~-~~~~~~~~~L~~gG~lv~~  180 (238)
                      ++||+|+++....... .++..+.+.|+|||.+++.
T Consensus       142 ~~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          142 PKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             CCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCceEEEECCCCHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            6899999987644443 4489999999999999886

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.52  E-value=1.9e-14  Score=119.23  Aligned_cols=112  Identities=13%  Similarity=0.254  Sum_probs=88.3

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc-CCCCcEEEEecchhHHHHH
Q 026461           59 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEALSVLDQ  137 (238)
Q Consensus        59 ~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~l~~  137 (238)
                      ...+...+...++.+|||+|||+|..+..+++.+.+..+|+++|+++.+++.+++++... |. +++++..+|+.+.++ 
T Consensus        99 ~~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~~~-  176 (275)
T 1yb2_A           99 ASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIADFIS-  176 (275)
T ss_dssp             -------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTTCCC-
T ss_pred             HHHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhccCc-
Confidence            334444455667789999999999999999997444789999999999999999999887 74 569999999876321 


Q ss_pred             HHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          138 LLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       138 ~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                             .++||+|+++..  ....+++.+.+.|+|||.+++..
T Consensus       177 -------~~~fD~Vi~~~~--~~~~~l~~~~~~LkpgG~l~i~~  211 (275)
T 1yb2_A          177 -------DQMYDAVIADIP--DPWNHVQKIASMMKPGSVATFYL  211 (275)
T ss_dssp             -------SCCEEEEEECCS--CGGGSHHHHHHTEEEEEEEEEEE
T ss_pred             -------CCCccEEEEcCc--CHHHHHHHHHHHcCCCCEEEEEe
Confidence                   468999999643  44678899999999999999864

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.52  E-value=3.6e-14  Score=114.50  Aligned_cols=119  Identities=15%  Similarity=0.137  Sum_probs=90.8

Q ss_pred             cHhHHHHHHHH--HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           55 APDAGQLMAML--LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        55 ~~~~~~~l~~l--~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      +.-.+.++..+  +...++.+|||+|||+|+.+.++|+...+.++|+++|+++++++.+++++.+.   .++..+.+|+.
T Consensus        60 sklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d~~  136 (233)
T 4df3_A           60 SKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGDAR  136 (233)
T ss_dssp             CHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESCTT
T ss_pred             hHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEecc
Confidence            33344444433  23567789999999999999999999877999999999999999998876553   36888888876


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcCCcc-chHHHHHHHHhccCCCeEEEEe
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDADKD-NYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~~~~-~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      +.....    ...+.+|+||.|...+ ....++.++.+.|||||.+++.
T Consensus       137 ~p~~~~----~~~~~vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          137 FPEKYR----HLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             CGGGGT----TTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             Cccccc----cccceEEEEEEeccCChhHHHHHHHHHHhccCCCEEEEE
Confidence            532111    1257899999986543 3456788999999999998875

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.52  E-value=9.5e-14  Score=112.73  Aligned_cols=116  Identities=23%  Similarity=0.313  Sum_probs=95.4

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      +.+.....+...+...++.+|||+|||+|..+..+++.   ..+|+++|+++.+++.+++++...++.+++++..+|+.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  151 (248)
T 2yvl_A           75 IYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKD  151 (248)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTT
T ss_pred             ccchhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhh
Confidence            44555556666666667889999999999999999987   579999999999999999999998887789999999876


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ...       ..++||+|+++..  ....+++.+.+.|+|||.+++..
T Consensus       152 ~~~-------~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~  190 (248)
T 2yvl_A          152 AEV-------PEGIFHAAFVDVR--EPWHYLEKVHKSLMEGAPVGFLL  190 (248)
T ss_dssp             SCC-------CTTCBSEEEECSS--CGGGGHHHHHHHBCTTCEEEEEE
T ss_pred             ccc-------CCCcccEEEECCc--CHHHHHHHHHHHcCCCCEEEEEe
Confidence            420       1468999999753  44577888999999999998854

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.52  E-value=3.5e-14  Score=114.86  Aligned_cols=109  Identities=16%  Similarity=0.168  Sum_probs=87.5

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHH
Q 026461           58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ  137 (238)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~  137 (238)
                      ...++..+....++.+|||||||+|..+..+++..   .+|+++|+++.+++.|++.+..     +++++++|+.+..  
T Consensus        30 ~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~~--   99 (250)
T 2p7i_A           30 HPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQ--   99 (250)
T ss_dssp             HHHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCC--
T ss_pred             HHHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHcC--
Confidence            34445555555677899999999999999999864   3899999999999999987532     6999999987761  


Q ss_pred             HHhcccCCCCeeEEEEcCCc---cchHHHHHHHH-hccCCCeEEEEecc
Q 026461          138 LLKYSENEGSFDYAFVDADK---DNYCNYHERLM-KLLKVGGIAVYDNT  182 (238)
Q Consensus       138 ~~~~~~~~~~fD~V~~d~~~---~~~~~~~~~~~-~~L~~gG~lv~~~~  182 (238)
                            ..++||+|++....   .+...+++++. +.|+|||.+++...
T Consensus       100 ------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~  142 (250)
T 2p7i_A          100 ------LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCP  142 (250)
T ss_dssp             ------CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             ------cCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence                  15799999987643   34578999999 99999999998653

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.51  E-value=8e-13  Score=104.00  Aligned_cols=102  Identities=15%  Similarity=0.104  Sum_probs=83.5

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeE
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  150 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~  150 (238)
                      +.+|||||||+|..+..++..   +.+|+++|+++.+++.+++++...+.  +++++.+|+.+..  +     ..++||+
T Consensus        30 ~~~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~-----~~~~fD~   97 (202)
T 2kw5_A           30 QGKILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFD--I-----VADAWEG   97 (202)
T ss_dssp             SSEEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBS--C-----CTTTCSE
T ss_pred             CCCEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcC--C-----CcCCccE
Confidence            339999999999999999975   46999999999999999999988775  6999999987651  1     2478999


Q ss_pred             EEEcCCc---cchHHHHHHHHhccCCCeEEEEecccc
Q 026461          151 AFVDADK---DNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       151 V~~d~~~---~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      |++....   .....+++.+.++|+|||.+++.....
T Consensus        98 v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  134 (202)
T 2kw5_A           98 IVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAP  134 (202)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECT
T ss_pred             EEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            9985322   345678899999999999999976543

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.51  E-value=1.9e-13  Score=126.88  Aligned_cols=109  Identities=20%  Similarity=0.359  Sum_probs=92.6

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCC-CcEEEEecchhHHHHHHHhcccCC
Q 026461           67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ...++++|||+|||+|..++.++..-  ..+|+++|+|+.+++.+++|+..+++. ++++++++|+.+.++..      .
T Consensus       536 ~~~~g~~VLDlg~GtG~~sl~aa~~g--a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~------~  607 (703)
T 3v97_A          536 QMSKGKDFLNLFSYTGSATVHAGLGG--ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREA------N  607 (703)
T ss_dssp             HHCTTCEEEEESCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHC------C
T ss_pred             HhcCCCcEEEeeechhHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhc------C
Confidence            34578899999999999999999742  467999999999999999999999987 58999999999987764      5


Q ss_pred             CCeeEEEEcCCc--------------cchHHHHHHHHhccCCCeEEEEeccc
Q 026461          146 GSFDYAFVDADK--------------DNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       146 ~~fD~V~~d~~~--------------~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ++||+|++|.+.              ..+..++..+.++|+|||+|+++...
T Consensus       608 ~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          608 EQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             CCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            799999999742              23456788888999999999987655

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.51  E-value=1.4e-14  Score=119.31  Aligned_cols=97  Identities=9%  Similarity=0.045  Sum_probs=80.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc--CC-CCcEEEEecchhHHHHHHHhcccCC
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GV-DHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      .++++|||||||+|..+..++.. +  .+|+++|+++.+++.|++++...  ++ .++++++.+|+.+.+          
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----------  137 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY-D--THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----------  137 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----------
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----------
Confidence            46789999999999999999987 4  79999999999999999876431  12 357999999987652          


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ++||+|++|...  ...+++.+.+.|+|||++++.
T Consensus       138 ~~fD~Ii~d~~d--p~~~~~~~~~~L~pgG~lv~~  170 (262)
T 2cmg_A          138 KKYDLIFCLQEP--DIHRIDGLKRMLKEDGVFISV  170 (262)
T ss_dssp             CCEEEEEESSCC--CHHHHHHHHTTEEEEEEEEEE
T ss_pred             hhCCEEEECCCC--hHHHHHHHHHhcCCCcEEEEE
Confidence            589999999643  235899999999999999985

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.51  E-value=3.6e-14  Score=115.05  Aligned_cols=104  Identities=13%  Similarity=0.187  Sum_probs=84.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      ++.+|||||||+|..+..++...  ..+|+++|+++.+++.+++++...+ ..+++++.+|+.+...       ..++||
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~~-------~~~~fD  148 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDFTP-------EPDSYD  148 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGCCC-------CSSCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhcCC-------CCCCEE
Confidence            47899999999999999988764  4699999999999999999987664 2468999999866421       246899


Q ss_pred             EEEEcCCccc-----hHHHHHHHHhccCCCeEEEEeccc
Q 026461          150 YAFVDADKDN-----YCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       150 ~V~~d~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      +|++......     ...+++.+.++|+|||++++.+..
T Consensus       149 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  187 (241)
T 2ex4_A          149 VIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNM  187 (241)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence            9999864332     347889999999999999986544

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.50  E-value=9e-14  Score=113.76  Aligned_cols=105  Identities=18%  Similarity=0.223  Sum_probs=86.1

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++.+|||||||+|..+..++..+  ..+|+++|+++.+++.+++++...   .+++++++|+.+. +      ...++
T Consensus        53 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~-~------~~~~~  120 (266)
T 3ujc_A           53 LNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTK-E------FPENN  120 (266)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTC-C------CCTTC
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccC-C------CCCCc
Confidence            4466799999999999999999875  469999999999999999876543   5799999998765 1      12579


Q ss_pred             eeEEEEcCCc-----cchHHHHHHHHhccCCCeEEEEecccc
Q 026461          148 FDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       148 fD~V~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      ||+|++....     .....+++.+.++|+|||.+++.+...
T Consensus       121 fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  162 (266)
T 3ujc_A          121 FDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCA  162 (266)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             EEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            9999987543     445678899999999999999987643

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.50  E-value=4.4e-14  Score=116.03  Aligned_cols=104  Identities=14%  Similarity=0.113  Sum_probs=80.5

Q ss_pred             HHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHH
Q 026461           61 LMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL  139 (238)
Q Consensus        61 ~l~~l~~~-~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~  139 (238)
                      ++..+... ....+|||||||+|..+..|+..   ..+|+|+|+|+.+++.|++       ..+++++++++.++.    
T Consensus        29 l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~---~~~v~gvD~s~~ml~~a~~-------~~~v~~~~~~~e~~~----   94 (257)
T 4hg2_A           29 LFRWLGEVAPARGDALDCGCGSGQASLGLAEF---FERVHAVDPGEAQIRQALR-------HPRVTYAVAPAEDTG----   94 (257)
T ss_dssp             HHHHHHHHSSCSSEEEEESCTTTTTHHHHHTT---CSEEEEEESCHHHHHTCCC-------CTTEEEEECCTTCCC----
T ss_pred             HHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHh---CCEEEEEeCcHHhhhhhhh-------cCCceeehhhhhhhc----
Confidence            34444433 24568999999999999999986   4599999999999987753       257999999987651    


Q ss_pred             hcccCCCCeeEEEEcCC--ccchHHHHHHHHhccCCCeEEEEec
Q 026461          140 KYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       140 ~~~~~~~~fD~V~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                         .+.++||+|++...  .-+...++.++.+.|||||++++-.
T Consensus        95 ---~~~~sfD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~l~~~~  135 (257)
T 4hg2_A           95 ---LPPASVDVAIAAQAMHWFDLDRFWAELRRVARPGAVFAAVT  135 (257)
T ss_dssp             ---CCSSCEEEEEECSCCTTCCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---ccCCcccEEEEeeehhHhhHHHHHHHHHHHcCCCCEEEEEE
Confidence               23689999998743  2345788999999999999988743

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.50  E-value=2.7e-13  Score=112.85  Aligned_cols=119  Identities=14%  Similarity=0.174  Sum_probs=92.5

Q ss_pred             HhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCC---CcEEEEecchh
Q 026461           56 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD---HKINFIESEAL  132 (238)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~  132 (238)
                      ......+..++...++.+|||||||+|..+..++..   +.+|+++|+++.+++.|+++....+..   .++.+..+|+.
T Consensus        43 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~  119 (293)
T 3thr_A           43 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWL  119 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGG
T ss_pred             HHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChh
Confidence            445566666666667889999999999999999986   459999999999999999887554432   35789999987


Q ss_pred             HHHHHHHhcccCCCCeeEEEEc-CC---ccc-------hHHHHHHHHhccCCCeEEEEec
Q 026461          133 SVLDQLLKYSENEGSFDYAFVD-AD---KDN-------YCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d-~~---~~~-------~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      +....+    ...++||+|++. ..   ...       ...+++.+.++|+|||++++..
T Consensus       120 ~~~~~~----~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  175 (293)
T 3thr_A          120 TLDKDV----PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  175 (293)
T ss_dssp             GHHHHS----CCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hCcccc----ccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            764332    125799999986 22   223       6778999999999999999864

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.50  E-value=1e-13  Score=111.53  Aligned_cols=112  Identities=24%  Similarity=0.332  Sum_probs=89.2

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      ..+.....+...+...++.+|||||||+|..+..++...   .+|+++|+++.+++.+++++...+   +++++.+|+.+
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~  127 (231)
T 1vbf_A           54 TALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTL  127 (231)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGG
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCccc
Confidence            445555555555566677899999999999999999874   699999999999999999987665   69999999877


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      .++.       .++||+|+++...+...   +.+.+.|+|||.+++..
T Consensus       128 ~~~~-------~~~fD~v~~~~~~~~~~---~~~~~~L~pgG~l~~~~  165 (231)
T 1vbf_A          128 GYEE-------EKPYDRVVVWATAPTLL---CKPYEQLKEGGIMILPI  165 (231)
T ss_dssp             CCGG-------GCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEEE
T ss_pred             cccc-------CCCccEEEECCcHHHHH---HHHHHHcCCCcEEEEEE
Confidence            3321       47899999987655443   46788999999998864

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.50  E-value=1.8e-13  Score=117.35  Aligned_cols=119  Identities=16%  Similarity=0.160  Sum_probs=96.6

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      +.+..+..+..+....++.+|||+|||+|..++.++....+..+|+|+|+++.+++.|++++...|+. ++++.++|+.+
T Consensus       187 l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~  265 (354)
T 3tma_A          187 LTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARH  265 (354)
T ss_dssp             CCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGG
T ss_pred             cCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhh
Confidence            44555566666666667789999999999999999997633689999999999999999999999987 79999999988


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCcc-----------chHHHHHHHHhccCCCeEEEEe
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~-----------~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ....       .+.||+|++|.+..           .+..+++.+.+.|+|||.+++-
T Consensus       266 ~~~~-------~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~  316 (354)
T 3tma_A          266 LPRF-------FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALL  316 (354)
T ss_dssp             GGGT-------CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEE
T ss_pred             Cccc-------cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            6332       36799999986421           1366788888999999998874

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.49  E-value=2.4e-13  Score=107.45  Aligned_cols=117  Identities=11%  Similarity=0.150  Sum_probs=90.0

Q ss_pred             HhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHH
Q 026461           56 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL  135 (238)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l  135 (238)
                      .....++..+....++.+|||+|||+|..+..++...  +.+|+++|+++.+++.+++++...+  .+++++++|+.+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~   84 (209)
T 2p8j_A            9 PQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVED--GYKTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKLP   84 (209)
T ss_dssp             THHHHHHHHHHHSSSCSEEEEESCCSSSCTHHHHHHT--TCEEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSCC
T ss_pred             hhHHHHHHHHhccCCCCEEEEECCCCCHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhCC
Confidence            3445566666666678899999999999865554432  5799999999999999999988766  35889999987641


Q ss_pred             HHHHhcccCCCCeeEEEEcCCc-----cchHHHHHHHHhccCCCeEEEEeccc
Q 026461          136 DQLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       136 ~~~~~~~~~~~~fD~V~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                        +     ..++||+|++....     .....+++.+.+.|+|||++++....
T Consensus        85 --~-----~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  130 (209)
T 2p8j_A           85 --F-----KDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLT  130 (209)
T ss_dssp             --S-----CTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             --C-----CCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence              1     24789999986432     34567888999999999999997654

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.49  E-value=5e-14  Score=113.30  Aligned_cols=116  Identities=16%  Similarity=0.209  Sum_probs=88.4

Q ss_pred             cHhH-HHHHHHHH-hhcCCCEEEEEcccccHHHHHHHhhCCC-----CCEEEEEeCCchhHHHHHHHHHHcCC----CCc
Q 026461           55 APDA-GQLMAMLL-RLVNAKKTIEIGVFTGYSLLLTALTIPE-----DGQITAIDVNRETYEIGLPIIKKAGV----DHK  123 (238)
Q Consensus        55 ~~~~-~~~l~~l~-~~~~~~~vLeiG~G~G~~t~~la~~~~~-----~~~v~~iD~~~~~~~~a~~~~~~~~~----~~~  123 (238)
                      .+.. ..++..+. ...+..+|||||||+|+.+..+++..+.     .++|+++|+++.+++.+++++...+.    ..+
T Consensus        67 ~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~  146 (227)
T 1r18_A           67 APHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQ  146 (227)
T ss_dssp             CHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             ChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCc
Confidence            4443 44444443 3455679999999999999999986542     36999999999999999999887651    246


Q ss_pred             EEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          124 INFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       124 v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      +++..+|+.+.++.       .++||+|+++.......   +.+.+.|+|||.+++.
T Consensus       147 v~~~~~d~~~~~~~-------~~~fD~I~~~~~~~~~~---~~~~~~LkpgG~lvi~  193 (227)
T 1r18_A          147 LLIVEGDGRKGYPP-------NAPYNAIHVGAAAPDTP---TELINQLASGGRLIVP  193 (227)
T ss_dssp             EEEEESCGGGCCGG-------GCSEEEEEECSCBSSCC---HHHHHTEEEEEEEEEE
T ss_pred             eEEEECCcccCCCc-------CCCccEEEECCchHHHH---HHHHHHhcCCCEEEEE
Confidence            99999998763321       37899999987655433   6778999999999986

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.49  E-value=1.4e-13  Score=113.91  Aligned_cols=104  Identities=15%  Similarity=0.142  Sum_probs=89.5

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++.+|||+|||+|..++.+|...  ..+|+++|++|.+++.+++|++.+++.++++++++|+.++.+        .+.
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~g--~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~--------~~~  192 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--------ENI  192 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------CSC
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHhc--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc--------ccC
Confidence            3467899999999999999999863  468999999999999999999999999999999999987633        478


Q ss_pred             eeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461          148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      ||.|+++.+. ...+++..+.++|++||+|.++..
T Consensus       193 ~D~Vi~~~p~-~~~~~l~~a~~~lk~gG~ih~~~~  226 (278)
T 3k6r_A          193 ADRILMGYVV-RTHEFIPKALSIAKDGAIIHYHNT  226 (278)
T ss_dssp             EEEEEECCCS-SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             CCEEEECCCC-cHHHHHHHHHHHcCCCCEEEEEee
Confidence            9999998654 345788888999999999877644

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.49  E-value=2.3e-13  Score=116.63  Aligned_cols=106  Identities=18%  Similarity=0.241  Sum_probs=88.2

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ...++++|||||||+|..+..+++. + ..+|+++|++ ++++.|++++...++.++++++++|+.+.  .+     +.+
T Consensus        63 ~~~~~~~VLDvGcG~G~~~~~la~~-g-~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~--~~-----~~~  132 (349)
T 3q7e_A           63 HLFKDKVVLDVGSGTGILCMFAAKA-G-ARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEV--EL-----PVE  132 (349)
T ss_dssp             HHHTTCEEEEESCTTSHHHHHHHHT-T-CSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTC--CC-----SSS
T ss_pred             ccCCCCEEEEEeccchHHHHHHHHC-C-CCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHc--cC-----CCC
Confidence            4567889999999999999999986 3 5699999999 59999999999999988899999999876  11     247


Q ss_pred             CeeEEEEcC------CccchHHHHHHHHhccCCCeEEEEecc
Q 026461          147 SFDYAFVDA------DKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       147 ~fD~V~~d~------~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      +||+|+++.      .......++..+.++|+|||+++.+..
T Consensus       133 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  174 (349)
T 3q7e_A          133 KVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRA  174 (349)
T ss_dssp             CEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEE
T ss_pred             ceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccccc
Confidence            999999863      224557788888999999999986543

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.48  E-value=1.3e-13  Score=111.19  Aligned_cols=104  Identities=16%  Similarity=0.085  Sum_probs=82.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .++.+|||+|||+|..+..++..++ .++|+++|+++.+++.+++++...   .++.++.+|+.+....+   .. .++|
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~---~~-~~~~  144 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYA---NI-VEKV  144 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGT---TT-SCCE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCccccc---cc-CccE
Confidence            4567999999999999999999876 789999999999999999886543   57999999987621101   01 3689


Q ss_pred             eEEEEcCC-ccchHHHHHHHHhccCCCeEEEEe
Q 026461          149 DYAFVDAD-KDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       149 D~V~~d~~-~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      |+|+.+.. ......+++.+.+.|+|||.+++.
T Consensus       145 D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          145 DVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            99997643 223366789999999999999986

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.48  E-value=1.6e-13  Score=109.03  Aligned_cols=110  Identities=15%  Similarity=0.176  Sum_probs=88.4

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHH
Q 026461           58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ  137 (238)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~  137 (238)
                      ...++..+....++.+|||||||+|..+..++..   ..+|+++|+++.+++.+++    .+. .+++++++|+.+..  
T Consensus        34 ~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~~--  103 (218)
T 3ou2_A           34 APAALERLRAGNIRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDWT--  103 (218)
T ss_dssp             HHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSCC--
T ss_pred             HHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccCC--
Confidence            4455555555666789999999999999999987   4699999999999999987    343 46999999987761  


Q ss_pred             HHhcccCCCCeeEEEEcCCccc-----hHHHHHHHHhccCCCeEEEEeccc
Q 026461          138 LLKYSENEGSFDYAFVDADKDN-----YCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       138 ~~~~~~~~~~fD~V~~d~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                            ..++||+|++......     ...+++.+.+.|+|||.+++.+..
T Consensus       104 ------~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  148 (218)
T 3ou2_A          104 ------PDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVT  148 (218)
T ss_dssp             ------CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ------CCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence                  2589999998764333     367889999999999999987654

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.48  E-value=9.1e-14  Score=120.51  Aligned_cols=116  Identities=14%  Similarity=0.261  Sum_probs=91.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc-----C-CC-CcEEEEecchhHHHHHHHh
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-----G-VD-HKINFIESEALSVLDQLLK  140 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-----~-~~-~~v~~~~~d~~~~l~~~~~  140 (238)
                      ..++.+|||||||+|..+..++..+++..+|+++|+++.+++.+++++...     | +. .+++++++|+.+.... ..
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~-~~  159 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATA-EP  159 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGC-BS
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhc-cc
Confidence            446789999999999999999998755789999999999999999988765     3 22 5799999998764210 00


Q ss_pred             cccCCCCeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEecccc
Q 026461          141 YSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       141 ~~~~~~~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      .+...++||+|++...   ..+...+++.+.++|+|||++++.+...
T Consensus       160 ~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~  206 (383)
T 4fsd_A          160 EGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYA  206 (383)
T ss_dssp             CCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            0122579999998864   3456789999999999999999987654

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.48  E-value=2.3e-13  Score=108.42  Aligned_cols=112  Identities=19%  Similarity=0.189  Sum_probs=88.1

Q ss_pred             HhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHH
Q 026461           56 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL  135 (238)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l  135 (238)
                      .....++..+. ..++.+|||+|||+|..+..++..   +.+|+++|+++.+++.+++++.     .+++++.+|+.+..
T Consensus        32 ~~~~~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~  102 (220)
T 3hnr_A           32 AHYEDILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFE  102 (220)
T ss_dssp             TTHHHHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCC
T ss_pred             HHHHHHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcC
Confidence            34455666554 347789999999999999999985   5699999999999999998753     46899999987651


Q ss_pred             HHHHhcccCCCCeeEEEEcCCccch---H--HHHHHHHhccCCCeEEEEecccc
Q 026461          136 DQLLKYSENEGSFDYAFVDADKDNY---C--NYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       136 ~~~~~~~~~~~~fD~V~~d~~~~~~---~--~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                             . .++||+|++.......   .  .+++.+.+.|+|||.+++.+..+
T Consensus       103 -------~-~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  148 (220)
T 3hnr_A          103 -------V-PTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIF  148 (220)
T ss_dssp             -------C-CSCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECB
T ss_pred             -------C-CCCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence                   1 3799999998654332   2  38899999999999999986543

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.48  E-value=2.6e-13  Score=111.83  Aligned_cols=112  Identities=13%  Similarity=0.076  Sum_probs=86.9

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCch------hHHHHHHHHHHcCCCCcEEEEecc-hhHH-HHHH
Q 026461           67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE------TYEIGLPIIKKAGVDHKINFIESE-ALSV-LDQL  138 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~------~~~~a~~~~~~~~~~~~v~~~~~d-~~~~-l~~~  138 (238)
                      ...++.+|||||||+|..+..++...++..+|+++|+++.      +++.+++++...++.++++++.+| .... ++ +
T Consensus        40 ~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~  118 (275)
T 3bkx_A           40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGP-I  118 (275)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGG-G
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCC-C
Confidence            4557789999999999999999998644689999999997      999999999988887789999998 2211 11 1


Q ss_pred             HhcccCCCCeeEEEEcCCc---cchHHHHHHHHhccCCCeEEEEecccc
Q 026461          139 LKYSENEGSFDYAFVDADK---DNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       139 ~~~~~~~~~fD~V~~d~~~---~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                           ..++||+|++....   .....+++.+..+++|||.+++.+...
T Consensus       119 -----~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~  162 (275)
T 3bkx_A          119 -----ADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSM  162 (275)
T ss_dssp             -----TTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECS
T ss_pred             -----CCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence                 25799999987543   233456666667777799999977654

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.48  E-value=2.5e-13  Score=116.90  Aligned_cols=109  Identities=16%  Similarity=0.136  Sum_probs=90.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHH-HHHHhcccCCCC
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL-DQLLKYSENEGS  147 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l-~~~~~~~~~~~~  147 (238)
                      ..+.+|||||||+|..+..+++.+| ..+++++|+ +.+++.|++++...++.++++++.+|+.+.. + +      +++
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~------p~~  248 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNK-EVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVP-F------PTG  248 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHST-TCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCC-C------CCC
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCC-CCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCC-C------CCC
Confidence            4678999999999999999999987 789999999 9999999999988888789999999986531 1 1      368


Q ss_pred             eeEEEEcCCcc-----chHHHHHHHHhccCCCeEEEEeccccCc
Q 026461          148 FDYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTLWGG  186 (238)
Q Consensus       148 fD~V~~d~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (238)
                      ||+|++....+     ....+++.+.+.|+|||.+++.+..++.
T Consensus       249 ~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  292 (363)
T 3dp7_A          249 FDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDR  292 (363)
T ss_dssp             CSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTS
T ss_pred             cCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCC
Confidence            99999865433     2346789999999999999887766543

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.48  E-value=2.5e-13  Score=117.51  Aligned_cols=115  Identities=14%  Similarity=0.164  Sum_probs=93.0

Q ss_pred             CcHhHHHHHHHHHhhc-----CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe
Q 026461           54 TAPDAGQLMAMLLRLV-----NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE  128 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~-----~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~  128 (238)
                      ..+....++..+....     ++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.+++++...++.  ++++.
T Consensus       212 ~d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis~~al~~A~~n~~~~~~~--v~~~~  286 (381)
T 3dmg_A          212 VDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEANALK--AQALH  286 (381)
T ss_dssp             CCHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT---TCEEEEEESBHHHHHHHHHHHHHTTCC--CEEEE
T ss_pred             CCHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEE
Confidence            4556666666665532     5679999999999999999986   469999999999999999999988863  89999


Q ss_pred             cchhHHHHHHHhcccCCCCeeEEEEcCCc--------cchHHHHHHHHhccCCCeEEEEe
Q 026461          129 SEALSVLDQLLKYSENEGSFDYAFVDADK--------DNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       129 ~d~~~~l~~~~~~~~~~~~fD~V~~d~~~--------~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      +|+.+....       .++||+|+++.+.        .....+++.+.+.|+|||.+++.
T Consensus       287 ~D~~~~~~~-------~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv  339 (381)
T 3dmg_A          287 SDVDEALTE-------EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLV  339 (381)
T ss_dssp             CSTTTTSCT-------TCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cchhhcccc-------CCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEE
Confidence            998776321       3799999998532        23467889999999999998884

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.48  E-value=2.2e-13  Score=109.90  Aligned_cols=104  Identities=17%  Similarity=0.172  Sum_probs=82.9

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHH--HHHHhcccCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL--DQLLKYSENE  145 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l--~~~~~~~~~~  145 (238)
                      ..+..+|||+|||+|..+..+++.+.+.++|+++|+++.+++.+.++....   .+++++.+|+.+..  +..      .
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~------~  145 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRML------I  145 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGG------C
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhccc------C
Confidence            345679999999999999999998744689999999999888888777664   46999999997642  211      4


Q ss_pred             CCeeEEEEcCCccc-hHHHHHHHHhccCCCeEEEEe
Q 026461          146 GSFDYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       146 ~~fD~V~~d~~~~~-~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ++||+|+++..... ...++..+.+.|+|||++++.
T Consensus       146 ~~~D~V~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~  181 (233)
T 2ipx_A          146 AMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVIS  181 (233)
T ss_dssp             CCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CcEEEEEEcCCCccHHHHHHHHHHHHcCCCeEEEEE
Confidence            78999999865322 244577889999999999984

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.48  E-value=8.7e-13  Score=107.32  Aligned_cols=99  Identities=18%  Similarity=0.349  Sum_probs=81.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.+++++...+.  +++++++|+.+..  .      .++|
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~--~------~~~f  106 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIA--F------KNEF  106 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCC--C------CSCE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcc--c------CCCc
Confidence            35679999999999999999985   56999999999999999999988765  5899999987741  1      4689


Q ss_pred             eEEEEcCC------ccchHHHHHHHHhccCCCeEEEEe
Q 026461          149 DYAFVDAD------KDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       149 D~V~~d~~------~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      |+|++...      ......+++.+.++|+|||+++++
T Consensus       107 D~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~  144 (252)
T 1wzn_A          107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (252)
T ss_dssp             EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence            99997521      123567888899999999999985

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.47  E-value=5.9e-13  Score=107.55  Aligned_cols=110  Identities=15%  Similarity=0.142  Sum_probs=87.8

Q ss_pred             HHHHHHHHHhhc--CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHH
Q 026461           58 AGQLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL  135 (238)
Q Consensus        58 ~~~~l~~l~~~~--~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l  135 (238)
                      ....+..++...  ++.+|||+|||+|..+..++..   ..+|+++|+++.+++.+++++...+.  +++++++|+.+..
T Consensus        23 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~   97 (246)
T 1y8c_A           23 WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLN   97 (246)
T ss_dssp             HHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCC
T ss_pred             HHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHC---CCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCC
Confidence            344444444433  6789999999999999999986   45899999999999999999988765  6899999987641


Q ss_pred             HHHHhcccCCCCeeEEEEcC-Cc------cchHHHHHHHHhccCCCeEEEEe
Q 026461          136 DQLLKYSENEGSFDYAFVDA-DK------DNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       136 ~~~~~~~~~~~~fD~V~~d~-~~------~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                        +      .++||+|++.. ..      .....+++.+.++|+|||+++++
T Consensus        98 --~------~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  141 (246)
T 1y8c_A           98 --I------NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             --C------SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             --c------cCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence              1      37899999975 32      34567888999999999999984

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.47  E-value=1.8e-13  Score=118.31  Aligned_cols=106  Identities=14%  Similarity=0.208  Sum_probs=88.2

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ...++++|||||||+|..++.+++. . ..+|+++|++ .+++.|++++...++.++++++++|+.++.  +      .+
T Consensus        60 ~~~~~~~VLDlGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~------~~  128 (376)
T 3r0q_C           60 HHFEGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDIS--L------PE  128 (376)
T ss_dssp             TTTTTCEEEEESCTTTHHHHHHHHT-T-CSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCC--C------SS
T ss_pred             ccCCCCEEEEeccCcCHHHHHHHhc-C-CCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcC--c------CC
Confidence            3457789999999999999999986 2 3599999999 999999999999999888999999997752  1      37


Q ss_pred             CeeEEEEcCC------ccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          147 SFDYAFVDAD------KDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       147 ~fD~V~~d~~------~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      +||+|+++..      ......++..+.++|+|||+++++...
T Consensus       129 ~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~  171 (376)
T 3r0q_C          129 KVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHAR  171 (376)
T ss_dssp             CEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred             cceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence            9999998641      133566888888999999999886554

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.47  E-value=5.1e-13  Score=114.00  Aligned_cols=104  Identities=16%  Similarity=0.177  Sum_probs=85.3

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           66 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ....++++|||||||+|..+..+++. + ..+|+++|+++ +++.|++++...++.++++++.+|+.+.  .+     +.
T Consensus        60 ~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~-----~~  129 (340)
T 2fyt_A           60 PHIFKDKVVLDVGCGTGILSMFAAKA-G-AKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEV--HL-----PV  129 (340)
T ss_dssp             GGGTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTS--CC-----SC
T ss_pred             hhhcCCCEEEEeeccCcHHHHHHHHc-C-CCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHh--cC-----CC
Confidence            34567789999999999999999986 3 46999999996 9999999999999888899999999765  11     24


Q ss_pred             CCeeEEEEcCC------ccchHHHHHHHHhccCCCeEEEE
Q 026461          146 GSFDYAFVDAD------KDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       146 ~~fD~V~~d~~------~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ++||+|+++..      ......++..+.++|+|||+++.
T Consensus       130 ~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip  169 (340)
T 2fyt_A          130 EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  169 (340)
T ss_dssp             SCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             CcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEc
Confidence            78999998641      22346688888899999999984

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.47  E-value=5.9e-13  Score=106.40  Aligned_cols=102  Identities=15%  Similarity=0.178  Sum_probs=83.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      ++.+|||+|||+|..+..++...+   +|+++|+++.+++.+++++...+  .+++++.+|+.+..  +     ..++||
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~--~-----~~~~~D  105 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLS--F-----EDKTFD  105 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCC--S-----CTTCEE
T ss_pred             CCCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCC--C-----CCCcEE
Confidence            467999999999999999998644   99999999999999999998776  56999999987641  1     247999


Q ss_pred             EEEEcCC--cc---chHHHHHHHHhccCCCeEEEEeccc
Q 026461          150 YAFVDAD--KD---NYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       150 ~V~~d~~--~~---~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      +|++...  ..   ....+++.+.++|+|||.+++....
T Consensus       106 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          106 YVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             EEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            9998754  22   3457888999999999999886543

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.47  E-value=7.2e-13  Score=114.51  Aligned_cols=103  Identities=17%  Similarity=0.198  Sum_probs=89.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc---------------CCCCcEEEEecchhH
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA---------------GVDHKINFIESEALS  133 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---------------~~~~~v~~~~~d~~~  133 (238)
                      .++.+|||+|||+|..++.++...+ ..+|+++|+++++++.+++|++.+               ++.+ ++++++|+.+
T Consensus        46 ~~~~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~-i~v~~~Da~~  123 (378)
T 2dul_A           46 LNPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKT-IVINHDDANR  123 (378)
T ss_dssp             HCCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSE-EEEEESCHHH
T ss_pred             cCCCEEEECCCchhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCc-eEEEcCcHHH
Confidence            3778999999999999999999876 578999999999999999999998               7754 9999999998


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      .+...      .+.||+|++|.. ....++++.+.+.|++||++++.
T Consensus       124 ~~~~~------~~~fD~I~lDP~-~~~~~~l~~a~~~lk~gG~l~vt  163 (378)
T 2dul_A          124 LMAER------HRYFHFIDLDPF-GSPMEFLDTALRSAKRRGILGVT  163 (378)
T ss_dssp             HHHHS------TTCEEEEEECCS-SCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHhc------cCCCCEEEeCCC-CCHHHHHHHHHHhcCCCCEEEEE
Confidence            87654      368999999863 34478899999999999988875

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.46  E-value=1.8e-12  Score=110.88  Aligned_cols=108  Identities=16%  Similarity=0.130  Sum_probs=90.8

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeE
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  150 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~  150 (238)
                      +.+|||||||+|..+..+++.+| ..+++++|+ +.+++.+++++...++.++++++.+|..+..+..      .++||+
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~~~D~  251 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHP-QLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE------GGAADV  251 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGT------TCCEEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCC-CCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccC------CCCccE
Confidence            78999999999999999999987 789999999 8999999999999898889999999987653111      467999


Q ss_pred             EEEcCCcc-----chHHHHHHHHhccCCCeEEEEeccccCc
Q 026461          151 AFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTLWGG  186 (238)
Q Consensus       151 V~~d~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (238)
                      |++....+     ....+++.+.+.|+|||.+++.+..++.
T Consensus       252 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  292 (352)
T 3mcz_A          252 VMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMND  292 (352)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCT
T ss_pred             EEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            99875433     2367889999999999999987766543

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.46  E-value=4.4e-13  Score=105.57  Aligned_cols=110  Identities=12%  Similarity=-0.017  Sum_probs=87.8

Q ss_pred             hHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHH
Q 026461           57 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD  136 (238)
Q Consensus        57 ~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~  136 (238)
                      ....++..+.... +.+|||+|||+|..+..++..   +.+|+++|+++.+++.++++.      .+++++++|+.+.. 
T Consensus        29 ~~~~~l~~~~~~~-~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~-   97 (203)
T 3h2b_A           29 PDRVLIEPWATGV-DGVILDVGSGTGRWTGHLASL---GHQIEGLEPATRLVELARQTH------PSVTFHHGTITDLS-   97 (203)
T ss_dssp             TTHHHHHHHHHHC-CSCEEEETCTTCHHHHHHHHT---TCCEEEECCCHHHHHHHHHHC------TTSEEECCCGGGGG-
T ss_pred             HHHHHHHHHhccC-CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhC------CCCeEEeCcccccc-
Confidence            3455566665543 789999999999999999986   458999999999999999872      36899999997752 


Q ss_pred             HHHhcccCCCCeeEEEEcCCc-----cchHHHHHHHHhccCCCeEEEEeccc
Q 026461          137 QLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       137 ~~~~~~~~~~~fD~V~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                       +     ..++||+|++....     .....+++.+.+.|+|||.+++....
T Consensus        98 -~-----~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  143 (203)
T 3h2b_A           98 -D-----SPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFS  143 (203)
T ss_dssp             -G-----SCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             -c-----CCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence             1     25899999986532     35678999999999999999987644

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.46  E-value=2.5e-13  Score=110.72  Aligned_cols=99  Identities=10%  Similarity=0.185  Sum_probs=82.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .++.+|||||||+|..+..+++..+  .+|+++|+++.+++.+++++.    ..+++++.+|+.+..       ...++|
T Consensus        43 ~~~~~vLD~GcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~-------~~~~~f  109 (253)
T 3g5l_A           43 FNQKTVLDLGCGFGWHCIYAAEHGA--KKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIA-------IEPDAY  109 (253)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCC-------CCTTCE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCC-------CCCCCe
Confidence            3678999999999999999998643  399999999999999998764    357999999987641       125799


Q ss_pred             eEEEEcCCc---cchHHHHHHHHhccCCCeEEEEe
Q 026461          149 DYAFVDADK---DNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       149 D~V~~d~~~---~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      |+|++....   .....+++.+.+.|+|||.+++.
T Consensus       110 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  144 (253)
T 3g5l_A          110 NVVLSSLALHYIASFDDICKKVYINLKSSGSFIFS  144 (253)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEE
Confidence            999987643   45678899999999999999986

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.46  E-value=8.9e-13  Score=111.96  Aligned_cols=106  Identities=17%  Similarity=0.188  Sum_probs=86.3

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           65 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      .....++++|||||||+|..+..+++. + ..+|+++|++ .+++.|++++...++.++++++.+|+.+..  +     +
T Consensus        33 ~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~-----~  102 (328)
T 1g6q_1           33 NKDLFKDKIVLDVGCGTGILSMFAAKH-G-AKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVH--L-----P  102 (328)
T ss_dssp             HHHHHTTCEEEEETCTTSHHHHHHHHT-C-CSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSC--C-----S
T ss_pred             hHhhcCCCEEEEecCccHHHHHHHHHC-C-CCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhcc--C-----C
Confidence            344567889999999999999999985 3 4699999999 589999999999999889999999987751  1     1


Q ss_pred             CCCeeEEEEcCC------ccchHHHHHHHHhccCCCeEEEEe
Q 026461          145 EGSFDYAFVDAD------KDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       145 ~~~fD~V~~d~~------~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      .++||+|+++..      ......++..+.++|+|||+++.+
T Consensus       103 ~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~  144 (328)
T 1g6q_1          103 FPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPD  144 (328)
T ss_dssp             SSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             CCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEe
Confidence            378999998732      233567788888999999999854

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.46  E-value=4.8e-13  Score=115.35  Aligned_cols=106  Identities=11%  Similarity=0.146  Sum_probs=89.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .+..+|||||||+|..+..+++.+| ..+++++|+ +.+++.+++++...++.+++++..+|..+.   +      +.+|
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~---~------p~~~  269 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFP-GLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFET---I------PDGA  269 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTC---C------CSSC
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCC-CCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCC---C------CCCc
Confidence            4568999999999999999999987 789999999 999999999999999888999999998732   1      2389


Q ss_pred             eEEEEcCCccch-----HHHHHHHHhccCCCeEEEEeccccC
Q 026461          149 DYAFVDADKDNY-----CNYHERLMKLLKVGGIAVYDNTLWG  185 (238)
Q Consensus       149 D~V~~d~~~~~~-----~~~~~~~~~~L~~gG~lv~~~~~~~  185 (238)
                      |+|++.....++     ..+++.+.+.|+|||.+++.+...+
T Consensus       270 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~  311 (369)
T 3gwz_A          270 DVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLID  311 (369)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCC
T ss_pred             eEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence            999987543332     3689999999999999999777654

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.46  E-value=6.7e-13  Score=108.46  Aligned_cols=101  Identities=22%  Similarity=0.231  Sum_probs=82.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++.+|||||||+|..+..++..   ..+|+++|+++.+++.+++++ . +...++++..+|+.+. + +     ..++
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-~-~~~~~~~~~~~d~~~~-~-~-----~~~~  104 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKI-A-GVDRKVQVVQADARAI-P-L-----PDES  104 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHT-T-TSCTTEEEEESCTTSC-C-S-----CTTC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHh-h-ccCCceEEEEcccccC-C-C-----CCCC
Confidence            356789999999999999999985   469999999999999999987 2 3345799999998654 1 1     2578


Q ss_pred             eeEEEEcCCc---cchHHHHHHHHhccCCCeEEEEe
Q 026461          148 FDYAFVDADK---DNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       148 fD~V~~d~~~---~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ||+|++....   .+...+++.+.+.|+|||.+++.
T Consensus       105 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          105 VHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             EEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence            9999987543   34578899999999999999886

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.46  E-value=6e-14  Score=114.49  Aligned_cols=119  Identities=13%  Similarity=0.106  Sum_probs=86.6

Q ss_pred             HHHHHHHhh---cCCCEEEEEcccccHHHHHHHhh--CCCCCEEEEEeCCchhHHHHHHHHHHc---CCCCc--------
Q 026461           60 QLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALT--IPEDGQITAIDVNRETYEIGLPIIKKA---GVDHK--------  123 (238)
Q Consensus        60 ~~l~~l~~~---~~~~~vLeiG~G~G~~t~~la~~--~~~~~~v~~iD~~~~~~~~a~~~~~~~---~~~~~--------  123 (238)
                      .++..++..   .++.+|||+|||+|..++.++..  .+ ..+|+++|+++.+++.|++++...   ++.++        
T Consensus        38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~-~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~  116 (250)
T 1o9g_A           38 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRS-LRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQS  116 (250)
T ss_dssp             HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGG-EEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccC-CCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhh
Confidence            455554443   24569999999999999999987  33 579999999999999999988765   44322        


Q ss_pred             -----------------EE-------------EEecchhHHHHHHHhcccCCCCeeEEEEcCCc------------cchH
Q 026461          124 -----------------IN-------------FIESEALSVLDQLLKYSENEGSFDYAFVDADK------------DNYC  161 (238)
Q Consensus       124 -----------------v~-------------~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~------------~~~~  161 (238)
                                       ++             +.++|+.+..+.....  ...+||+|+++.+.            ..+.
T Consensus       117 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~--~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~  194 (250)
T 1o9g_A          117 ERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVL--AGSAPDVVLTDLPYGERTHWEGQVPGQPVA  194 (250)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHH--TTCCCSEEEEECCGGGSSSSSSCCCHHHHH
T ss_pred             hhcccccchhhhhhhhhhhhhccccccccccceeeccccccccccccc--CCCCceEEEeCCCeeccccccccccccHHH
Confidence                             66             9999987753210000  13589999997431            2234


Q ss_pred             HHHHHHHhccCCCeEEEEec
Q 026461          162 NYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       162 ~~~~~~~~~L~~gG~lv~~~  181 (238)
                      .+++.+.++|+|||++++.+
T Consensus       195 ~~l~~~~~~LkpgG~l~~~~  214 (250)
T 1o9g_A          195 GLLRSLASALPAHAVIAVTD  214 (250)
T ss_dssp             HHHHHHHHHSCTTCEEEEEE
T ss_pred             HHHHHHHHhcCCCcEEEEeC
Confidence            78888999999999999843

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.45  E-value=4e-13  Score=111.76  Aligned_cols=105  Identities=12%  Similarity=0.136  Sum_probs=86.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .++.+|||||||+|..+..++.. + ..+|+++|+++.+++.+++++...+...+++++++|+.+..  +    ...++|
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~----~~~~~f  134 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERA-G-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH--M----DLGKEF  134 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHH-T-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSC--C----CCSSCE
T ss_pred             CCCCeEEEECCCCCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccc--c----CCCCCc
Confidence            56789999999999999998875 2 46999999999999999999998887778999999987651  1    025789


Q ss_pred             eEEEEcCCc-------cchHHHHHHHHhccCCCeEEEEec
Q 026461          149 DYAFVDADK-------DNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       149 D~V~~d~~~-------~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      |+|++....       .....+++.+.++|+|||.+++..
T Consensus       135 D~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  174 (298)
T 1ri5_A          135 DVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV  174 (298)
T ss_dssp             EEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            999987543       234678899999999999999864

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.45  E-value=6.4e-13  Score=105.92  Aligned_cols=110  Identities=11%  Similarity=0.113  Sum_probs=84.7

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHH
Q 026461           60 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL  139 (238)
Q Consensus        60 ~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~  139 (238)
                      .++..+ ...++.+|||||||+|..+..++..   +.+|+++|+++.+++.++++       .++++..++..+......
T Consensus        43 ~~~~~~-~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~  111 (227)
T 3e8s_A           43 AILLAI-LGRQPERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKV  111 (227)
T ss_dssp             HHHHHH-HHTCCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCS
T ss_pred             HHHHHh-hcCCCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhccccc
Confidence            344433 4456799999999999999999986   46999999999999999876       357788888766522110


Q ss_pred             hcccCCCCeeEEEEcCC--ccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          140 KYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       140 ~~~~~~~~fD~V~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                         ....+||+|++...  ......+++.+.++|+|||++++....
T Consensus       112 ---~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~  154 (227)
T 3e8s_A          112 ---PVGKDYDLICANFALLHQDIIELLSAMRTLLVPGGALVIQTLH  154 (227)
T ss_dssp             ---CCCCCEEEEEEESCCCSSCCHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ---ccCCCccEEEECchhhhhhHHHHHHHHHHHhCCCeEEEEEecC
Confidence               12356999998743  456678999999999999999997653

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.45  E-value=3.2e-13  Score=116.93  Aligned_cols=105  Identities=19%  Similarity=0.127  Sum_probs=90.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCc-EEEEecchhHHHH-HHHhcccCCCC
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLD-QLLKYSENEGS  147 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~l~-~~~~~~~~~~~  147 (238)
                      ++.+|||++||+|..++.++...+...+|+++|+++.+++.+++|++.+++.++ ++++++|+.+.+. .+      .+.
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~------~~~  125 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW------GFG  125 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC------SSC
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh------CCC
Confidence            467999999999999999998764236899999999999999999999999877 9999999998876 54      468


Q ss_pred             eeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ||+|++|. ......+++.+.++|++||+|++.-
T Consensus       126 fD~V~lDP-~g~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          126 FDYVDLDP-FGTPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             EEEEEECC-SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcEEEECC-CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence            99999997 3344678899999999999888743

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.45  E-value=3.3e-13  Score=114.64  Aligned_cols=106  Identities=12%  Similarity=0.084  Sum_probs=89.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      +..+|||||||+|..+..+++.+| ..+++++|+ +.+++.+++++...++.+++++..+|..+.   +      +.+||
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~------p~~~D  237 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHE-DLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDP---L------PAGAG  237 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC---C------CCSCS
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCC-CCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCC---C------CCCCc
Confidence            457999999999999999999987 789999999 999999999999999888999999998632   1      23899


Q ss_pred             EEEEcCCccc-----hHHHHHHHHhccCCCeEEEEeccccCc
Q 026461          150 YAFVDADKDN-----YCNYHERLMKLLKVGGIAVYDNTLWGG  186 (238)
Q Consensus       150 ~V~~d~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (238)
                      +|++....++     ....++++.+.|+|||.+++.+...+.
T Consensus       238 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  279 (332)
T 3i53_A          238 GYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGD  279 (332)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC-
T ss_pred             EEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCC
Confidence            9998754332     356889999999999999998776544

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.44  E-value=8.6e-13  Score=112.94  Aligned_cols=103  Identities=16%  Similarity=0.159  Sum_probs=85.0

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ...++++|||||||+|..+..+++. + ..+|+++|+++ +++.|+++++..++.++++++.+|+.+..  +      .+
T Consensus        47 ~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~------~~  115 (348)
T 2y1w_A           47 TDFKDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS--L------PE  115 (348)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC--C------SS
T ss_pred             ccCCcCEEEEcCCCccHHHHHHHhC-C-CCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCC--C------CC
Confidence            3457789999999999999999985 3 56999999996 88999999999998888999999987651  1      36


Q ss_pred             CeeEEEEcCC-----ccchHHHHHHHHhccCCCeEEEEe
Q 026461          147 SFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       147 ~fD~V~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      +||+|++...     .......+..+.++|+|||+++++
T Consensus       116 ~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          116 QVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             CEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             ceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            8999998743     234567777888999999999864

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.44  E-value=1.3e-13  Score=110.90  Aligned_cols=92  Identities=13%  Similarity=0.063  Sum_probs=76.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC-CCC
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN-EGS  147 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~-~~~  147 (238)
                      .++.+|||||||+|..+..++..   ..+|+++|+++.+++.++++      ..+++++++|+.+.++.      . .++
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~d~~~~~~~------~~~~~  111 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARAN------APHADVYEWNGKGELPA------GLGAP  111 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHH------CTTSEEEECCSCSSCCT------TCCCC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHh------CCCceEEEcchhhccCC------cCCCC
Confidence            46789999999999999999986   46999999999999999987      24699999998654331      2 479


Q ss_pred             eeEEEEcCCccchHHHHHHHHhccCCCeEEE
Q 026461          148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAV  178 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv  178 (238)
                      ||+|++..   ....+++.+.++|+|||.++
T Consensus       112 fD~v~~~~---~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          112 FGLIVSRR---GPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             EEEEEEES---CCSGGGGGHHHHEEEEEEEE
T ss_pred             EEEEEeCC---CHHHHHHHHHHHcCCCcEEE
Confidence            99999873   45677788899999999999

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.44  E-value=2.1e-13  Score=110.47  Aligned_cols=99  Identities=15%  Similarity=0.188  Sum_probs=81.1

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++.+|||||||+|..+..+++.   +.+|+++|+++.+++.++++         ++++.+|+.+.+..+     ..++
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~-----~~~~  101 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEE---GIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSL-----PDKY  101 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHH---TCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTS-----CTTC
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhc-----CCCC
Confidence            446689999999999999999986   45899999999999988864         788999988875433     2589


Q ss_pred             eeEEEEcCCcc-----chHHHHHHHHhccCCCeEEEEeccc
Q 026461          148 FDYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       148 fD~V~~d~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ||+|++.....     ....+++.+.+.|+|||.+++....
T Consensus       102 fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  142 (240)
T 3dli_A          102 LDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPN  142 (240)
T ss_dssp             BSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEEC
T ss_pred             eeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            99999875322     4578999999999999999986543

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.44  E-value=4.6e-13  Score=107.44  Aligned_cols=104  Identities=22%  Similarity=0.278  Sum_probs=85.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCC----CcEEEEecchhHHHHHHHhcccC
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD----HKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      .++.+|||+|||+|..+..++..   ..+|+++|+++.+++.+++++...++.    .++++..+|+.+..       ..
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------~~   98 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLS-------FH   98 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCC-------SC
T ss_pred             CCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccC-------CC
Confidence            46789999999999999999986   569999999999999999998877663    46899999987641       12


Q ss_pred             CCCeeEEEEcCCccc---h---HHHHHHHHhccCCCeEEEEecc
Q 026461          145 EGSFDYAFVDADKDN---Y---CNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~---~---~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      .++||+|++......   .   ..+++.+.+.|+|||.+++.+.
T Consensus        99 ~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (235)
T 3sm3_A           99 DSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF  142 (235)
T ss_dssp             TTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence            579999998754332   2   2789999999999999998754

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.44  E-value=2e-13  Score=111.47  Aligned_cols=99  Identities=19%  Similarity=0.142  Sum_probs=83.1

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++.+|||||||+|..+..++..++ ..+|+++|+++.+++.++++      ..+++++.+|+.+..  .      .++
T Consensus        31 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~------~~~~~~~~~d~~~~~--~------~~~   95 (259)
T 2p35_A           31 LERVLNGYDLGCGPGNSTELLTDRYG-VNVITGIDSDDDMLEKAADR------LPNTNFGKADLATWK--P------AQK   95 (259)
T ss_dssp             CSCCSSEEEETCTTTHHHHHHHHHHC-TTSEEEEESCHHHHHHHHHH------STTSEEEECCTTTCC--C------SSC
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh------CCCcEEEECChhhcC--c------cCC
Confidence            34667999999999999999999876 78999999999999999987      246899999987652  1      579


Q ss_pred             eeEEEEcCCc---cchHHHHHHHHhccCCCeEEEEec
Q 026461          148 FDYAFVDADK---DNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       148 fD~V~~d~~~---~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ||+|++....   .+...+++.+.+.|+|||.+++..
T Consensus        96 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  132 (259)
T 2p35_A           96 ADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQM  132 (259)
T ss_dssp             EEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             cCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEe
Confidence            9999997643   355788999999999999999864

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.44  E-value=3.5e-13  Score=103.17  Aligned_cols=100  Identities=11%  Similarity=0.035  Sum_probs=81.5

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ...++.+|||+|||+|..+..+++..   .+|+++|+++.+++.++++      .+++++..+| .   +      ...+
T Consensus        14 ~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~v~~~~~d-~---~------~~~~   74 (170)
T 3i9f_A           14 FEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEK------FDSVITLSDP-K---E------IPDN   74 (170)
T ss_dssp             HSSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHH------CTTSEEESSG-G---G------SCTT
T ss_pred             CcCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHh------CCCcEEEeCC-C---C------CCCC
Confidence            45567799999999999999999864   3999999999999999987      2469999988 1   1      1257


Q ss_pred             CeeEEEEcCCc---cchHHHHHHHHhccCCCeEEEEeccccC
Q 026461          147 SFDYAFVDADK---DNYCNYHERLMKLLKVGGIAVYDNTLWG  185 (238)
Q Consensus       147 ~fD~V~~d~~~---~~~~~~~~~~~~~L~~gG~lv~~~~~~~  185 (238)
                      +||+|++....   .+...+++.+.+.|+|||.+++.+....
T Consensus        75 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  116 (170)
T 3i9f_A           75 SVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKE  116 (170)
T ss_dssp             CEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             ceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCcc
Confidence            99999987543   3567889999999999999999876543

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.44  E-value=1.1e-13  Score=113.10  Aligned_cols=97  Identities=13%  Similarity=0.193  Sum_probs=75.2

Q ss_pred             HhHHHHHHHHHhhc-----CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecc
Q 026461           56 PDAGQLMAMLLRLV-----NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE  130 (238)
Q Consensus        56 ~~~~~~l~~l~~~~-----~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d  130 (238)
                      +....++..++...     ++.+|||+|||+|..+..++...+ ..+|+++|+++.+++.|++++...++.++++++++|
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d  124 (254)
T 2h00_A           46 LNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVP  124 (254)
T ss_dssp             HHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred             HHHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcc
Confidence            45556666665432     456999999999999999998765 689999999999999999999999988889999999


Q ss_pred             hhH-HHHHHHhcccCCCCeeEEEEcC
Q 026461          131 ALS-VLDQLLKYSENEGSFDYAFVDA  155 (238)
Q Consensus       131 ~~~-~l~~~~~~~~~~~~fD~V~~d~  155 (238)
                      +.+ ++..+...  ..++||+|+++.
T Consensus       125 ~~~~~~~~~~~~--~~~~fD~i~~np  148 (254)
T 2h00_A          125 QKTLLMDALKEE--SEIIYDFCMCNP  148 (254)
T ss_dssp             TTCSSTTTSTTC--CSCCBSEEEECC
T ss_pred             hhhhhhhhhhcc--cCCcccEEEECC
Confidence            765 22222100  015899999984

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.44  E-value=1.2e-12  Score=111.58  Aligned_cols=101  Identities=19%  Similarity=0.140  Sum_probs=87.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .++.+|||+|||+|..++. +.  . ..+|+++|+++.+++.+++|+..+++.++++++++|+.+.+          ++|
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~--~-~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~----------~~f  259 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK--N-AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD----------VKG  259 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT--T-SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC----------CCE
T ss_pred             CCCCEEEEccCccCHHHHh-cc--C-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc----------CCC
Confidence            4778999999999999999 87  3 67999999999999999999999998778999999998762          589


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEEEecccc
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      |+|++|.+. ....+++.+.++|+|||++++.....
T Consensus       260 D~Vi~dpP~-~~~~~l~~~~~~L~~gG~l~~~~~~~  294 (336)
T 2yx1_A          260 NRVIMNLPK-FAHKFIDKALDIVEEGGVIHYYTIGK  294 (336)
T ss_dssp             EEEEECCTT-TGGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred             cEEEECCcH-hHHHHHHHHHHHcCCCCEEEEEEeec
Confidence            999998643 34578888999999999998876553

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.44  E-value=9.3e-13  Score=111.70  Aligned_cols=106  Identities=16%  Similarity=0.217  Sum_probs=88.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .++.+|||+|||+|..+..+++.+| ..+++++|++ .+++.+++++...++.++++++.+|..+.  .+      ...|
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~------~~~~  233 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNP-NAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEV--DY------GNDY  233 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTS--CC------CSCE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccC--CC------CCCC
Confidence            5678999999999999999999986 7899999999 99999999999988888899999998764  11      3459


Q ss_pred             eEEEEcCCccc-----hHHHHHHHHhccCCCeEEEEecccc
Q 026461          149 DYAFVDADKDN-----YCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       149 D~V~~d~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      |+|++....++     ...+++.+.+.|+|||.+++.+...
T Consensus       234 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~  274 (335)
T 2r3s_A          234 DLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIP  274 (335)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             cEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecC
Confidence            99998654333     3578899999999999888766554

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.43  E-value=6.2e-13  Score=109.03  Aligned_cols=107  Identities=14%  Similarity=0.095  Sum_probs=83.4

Q ss_pred             HHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHH
Q 026461           59 GQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ  137 (238)
Q Consensus        59 ~~~l~~l~~~-~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~  137 (238)
                      ..++..+... .++.+|||||||+|..+..++..   ..+|+++|+++.+++.|++++.      +++++++|+.+... 
T Consensus        38 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~-  107 (263)
T 3pfg_A           38 ADLAALVRRHSPKAASLLDVACGTGMHLRHLADS---FGTVEGLELSADMLAIARRRNP------DAVLHHGDMRDFSL-  107 (263)
T ss_dssp             HHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTT---SSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCCC-
T ss_pred             HHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCEEEECChHHCCc-
Confidence            3333434333 34589999999999999999986   3589999999999999998742      68999999877411 


Q ss_pred             HHhcccCCCCeeEEEEcC-Ccc------chHHHHHHHHhccCCCeEEEEecc
Q 026461          138 LLKYSENEGSFDYAFVDA-DKD------NYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       138 ~~~~~~~~~~fD~V~~d~-~~~------~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                             .++||+|++.. ...      ....+++.+.++|+|||.++++..
T Consensus       108 -------~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~  152 (263)
T 3pfg_A          108 -------GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPW  152 (263)
T ss_dssp             -------SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred             -------cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence                   47999999875 322      345678999999999999999754

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.43  E-value=4.4e-13  Score=112.11  Aligned_cols=104  Identities=10%  Similarity=0.113  Sum_probs=84.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCC--CcEEEEecchhHHHHHHHhcccCCCC
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ++.+|||||||+|..+..++..   +.+|+++|+++.+++.+++++...+..  .+++++++|+.+..        ..++
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~  150 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA--------LDKR  150 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC--------CSCC
T ss_pred             CCCcEEEEeccCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC--------cCCC
Confidence            4459999999999999999986   468999999999999999999876642  57999999997741        1479


Q ss_pred             eeEEEEcC----C--ccchHHHHHHHHhccCCCeEEEEecccc
Q 026461          148 FDYAFVDA----D--KDNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       148 fD~V~~d~----~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      ||+|++..    .  ......+++.+.+.|+|||.+++.....
T Consensus       151 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  193 (299)
T 3g2m_A          151 FGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMS  193 (299)
T ss_dssp             EEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             cCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence            99998641    1  1235788999999999999999976443

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.43  E-value=5.8e-13  Score=114.69  Aligned_cols=105  Identities=14%  Similarity=0.252  Sum_probs=85.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++++|||||||+|..+++.|++-  ..+|++||.++ +++.|+++++.+|+.++|+++++++.++  .+      +++
T Consensus        81 ~~~~k~VLDvG~GtGiLs~~Aa~aG--A~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~--~l------pe~  149 (376)
T 4hc4_A           81 ALRGKTVLDVGAGTGILSIFCAQAG--ARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETV--EL------PEQ  149 (376)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTC--CC------SSC
T ss_pred             hcCCCEEEEeCCCccHHHHHHHHhC--CCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeee--cC------Ccc
Confidence            4578899999999999998888753  46899999986 7899999999999999999999999876  22      579


Q ss_pred             eeEEEEcC------CccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          148 FDYAFVDA------DKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       148 fD~V~~d~------~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      +|+|+...      .....+.++....++|+|||+++.+.+.
T Consensus       150 ~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~~at  191 (376)
T 4hc4_A          150 VDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASAE  191 (376)
T ss_dssp             EEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESCEEE
T ss_pred             ccEEEeecccccccccchhhhHHHHHHhhCCCCceECCccce
Confidence            99998742      1234566777777999999998875543

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.43  E-value=1.8e-13  Score=110.18  Aligned_cols=103  Identities=16%  Similarity=0.133  Sum_probs=79.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCC-chhHHHH---HHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVN-RETYEIG---LPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~-~~~~~~a---~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      .++.+|||||||+|..+..++...+ ..+|+|+|++ +.+++.|   ++++...++. ++++.++|+.++....      
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-~v~~~~~d~~~l~~~~------   94 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQ-NTFYIGIDPVKENLFDISKKIIKKPSKGGLS-NVVFVIAAAESLPFEL------   94 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCT-TEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-SEEEECCBTTBCCGGG------
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEcCHHHhhhhc------
Confidence            3667999999999999999997655 7899999999 5555555   7777777764 5999999997762111      


Q ss_pred             CCCeeEEEEcCCcc--------chHHHHHHHHhccCCCeEEEE
Q 026461          145 EGSFDYAFVDADKD--------NYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       145 ~~~fD~V~~d~~~~--------~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      .+.+|.|++..+..        ....++..+.+.|||||.+++
T Consensus        95 ~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A           95 KNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             TTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             cCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            36788887764321        235678999999999999998

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.43  E-value=1.1e-12  Score=105.86  Aligned_cols=98  Identities=21%  Similarity=0.274  Sum_probs=80.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .+..+|||+|||+|..+..++..    .+|+++|+++.+++.+++++...+  .+++++++|+.+..  .      .++|
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~--~------~~~f   97 (243)
T 3d2l_A           32 EPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELE--L------PEPV   97 (243)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCC--C------SSCE
T ss_pred             CCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcC--C------CCCc
Confidence            34579999999999999999875    699999999999999999988766  46899999987641  1      3789


Q ss_pred             eEEEEcC-Cc------cchHHHHHHHHhccCCCeEEEEe
Q 026461          149 DYAFVDA-DK------DNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       149 D~V~~d~-~~------~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      |+|++.. ..      .....+++.+.++|+|||.++++
T Consensus        98 D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  136 (243)
T 3d2l_A           98 DAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD  136 (243)
T ss_dssp             EEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            9999864 21      33467888899999999999984

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.43  E-value=3.7e-13  Score=106.71  Aligned_cols=98  Identities=15%  Similarity=0.077  Sum_probs=80.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++.+|||||||+|..+..++..   +.+|+++|+++.+++.+++++       ++++..+|+.+..        ..++
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~--------~~~~  102 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLD--------AIDA  102 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCC--------CCSC
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc-------CCceEEeeeccCC--------CCCc
Confidence            445779999999999999999985   469999999999999999886       3677888876653        1589


Q ss_pred             eeEEEEcCCcc-----chHHHHHHHHhccCCCeEEEEeccc
Q 026461          148 FDYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       148 fD~V~~d~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ||+|++.....     ....+++.+.+.|+|||++++....
T Consensus       103 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  143 (211)
T 3e23_A          103 YDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKS  143 (211)
T ss_dssp             EEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence            99999976433     4457889999999999999987443

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.43  E-value=7.2e-13  Score=107.78  Aligned_cols=102  Identities=9%  Similarity=0.127  Sum_probs=83.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .++.+|||||||+|..+..++...  ..+|+++|+++.+++.+++++...   .+++++++|+.+. + +     ..++|
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~-~-~-----~~~~f  159 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETA-T-L-----PPNTY  159 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGC-C-C-----CSSCE
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHC-C-C-----CCCCe
Confidence            457899999999999999998864  458999999999999999987543   5699999998764 1 1     24799


Q ss_pred             eEEEEcCCcc-----chHHHHHHHHhccCCCeEEEEecc
Q 026461          149 DYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       149 D~V~~d~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      |+|++.....     ....+++.+.+.|+|||++++.+.
T Consensus       160 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  198 (254)
T 1xtp_A          160 DLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            9999876433     346788999999999999998764

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.42  E-value=6.8e-13  Score=109.84  Aligned_cols=101  Identities=18%  Similarity=0.138  Sum_probs=83.1

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           65 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      .+...++.+|||||||+|..+..++.  + ..+|+++|+++.+++.+++++      .++++..+|+.+. + +      
T Consensus        52 ~l~~~~~~~vLDiGcG~G~~~~~l~~--~-~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-~------  114 (279)
T 3ccf_A           52 LLNPQPGEFILDLGCGTGQLTEKIAQ--S-GAEVLGTDNAATMIEKARQNY------PHLHFDVADARNF-R-V------  114 (279)
T ss_dssp             HHCCCTTCEEEEETCTTSHHHHHHHH--T-TCEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTC-C-C------
T ss_pred             HhCCCCCCEEEEecCCCCHHHHHHHh--C-CCeEEEEECCHHHHHHHHhhC------CCCEEEECChhhC-C-c------
Confidence            34455778999999999999999998  3 689999999999999998864      4588999998764 1 1      


Q ss_pred             CCCeeEEEEcCCc---cchHHHHHHHHhccCCCeEEEEecc
Q 026461          145 EGSFDYAFVDADK---DNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       145 ~~~fD~V~~d~~~---~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      .++||+|++....   .+...+++.+.+.|+|||.+++...
T Consensus       115 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~  155 (279)
T 3ccf_A          115 DKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFG  155 (279)
T ss_dssp             SSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEec
Confidence            4799999987543   4567889999999999999998643

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.42  E-value=1.1e-12  Score=106.44  Aligned_cols=115  Identities=12%  Similarity=0.039  Sum_probs=85.7

Q ss_pred             HHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHH
Q 026461           59 GQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ  137 (238)
Q Consensus        59 ~~~l~~l~~-~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~  137 (238)
                      ...+..+.. ..+..+|||||||+|..+..++...+   +|+++|+++.+++.+++++   . ..+++++++|+.+....
T Consensus        44 ~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~---~-~~~~~~~~~d~~~~~~~  116 (245)
T 3ggd_A           44 VVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKEN---T-AANISYRLLDGLVPEQA  116 (245)
T ss_dssp             HHHHHHHTTTSCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHS---C-CTTEEEEECCTTCHHHH
T ss_pred             HHHHHHHhhccCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhC---c-ccCceEEECcccccccc
Confidence            344444433 34567899999999999999999754   8999999999999999876   2 24699999999875322


Q ss_pred             H-HhcccCCCCeeEEEEcCCc-----cchHHHHHHHHhccCCCeEEEEeccc
Q 026461          138 L-LKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       138 ~-~~~~~~~~~fD~V~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      . .+.   ...||+|++....     .....+++.+.+.|+|||.+++.+..
T Consensus       117 ~~~~~---~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  165 (245)
T 3ggd_A          117 AQIHS---EIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELG  165 (245)
T ss_dssp             HHHHH---HHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             ccccc---ccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            1 000   1359999987532     24568999999999999987776544

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.42  E-value=3.2e-12  Score=109.67  Aligned_cols=106  Identities=13%  Similarity=0.086  Sum_probs=88.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++.+|||||||+|..+..+++..| ..+++++|+ +.+++.+++++...++.++++++.+|+.+. +        ...
T Consensus       188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~--------~~~  256 (359)
T 1x19_A          188 LDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE-S--------YPE  256 (359)
T ss_dssp             CTTCCEEEEESCTTCHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS-C--------CCC
T ss_pred             CCCCCEEEEECCcccHHHHHHHHHCC-CCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC-C--------CCC
Confidence            45678999999999999999999987 789999999 999999999999988888899999998764 1        134


Q ss_pred             eeEEEEcCCccc-----hHHHHHHHHhccCCCeEEEEecccc
Q 026461          148 FDYAFVDADKDN-----YCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       148 fD~V~~d~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      +|+|++....++     ...+++.+.+.|+|||.+++.+...
T Consensus       257 ~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~  298 (359)
T 1x19_A          257 ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI  298 (359)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECC
T ss_pred             CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence            499998754332     4678899999999999997766554

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.41  E-value=6.4e-13  Score=114.47  Aligned_cols=104  Identities=16%  Similarity=0.174  Sum_probs=87.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++.+|||||||+|..+..+++..+ ..+++++|+ +.+++.+++++...++.++++++.+|..+.+         ...
T Consensus       180 ~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~  248 (374)
T 1qzz_A          180 WSAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL---------PVT  248 (374)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------SCC
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHCC-CCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcC---------CCC
Confidence            34678999999999999999999986 789999999 9999999999999998878999999986532         235


Q ss_pred             eeEEEEcCCccch-----HHHHHHHHhccCCCeEEEEecc
Q 026461          148 FDYAFVDADKDNY-----CNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       148 fD~V~~d~~~~~~-----~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      ||+|++....+++     ..+++.+.+.|+|||.+++.+.
T Consensus       249 ~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          249 ADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            9999987643322     3688999999999998887665

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.41  E-value=1.2e-12  Score=109.90  Aligned_cols=110  Identities=17%  Similarity=0.154  Sum_probs=77.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCC-----cEEEEecchhHH--HHHHHhcc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-----KINFIESEALSV--LDQLLKYS  142 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-----~v~~~~~d~~~~--l~~~~~~~  142 (238)
                      ++.+|||||||+|..+..++.. . ..+|+|+|+|+.+++.|++.....+...     +++|.++|+...  ...+.. .
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~-~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~-~  124 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYG-E-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVRE-V  124 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHT-T
T ss_pred             CCCeEEEEecCCcHhHHHHHhc-C-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhc-c
Confidence            3579999999999866655542 1 4699999999999999999887765421     267777776210  011110 0


Q ss_pred             cCCCCeeEEEEcCCc------cchHHHHHHHHhccCCCeEEEEecc
Q 026461          143 ENEGSFDYAFVDADK------DNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       143 ~~~~~fD~V~~d~~~------~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      ...++||+|++....      .+...+++++.++|+|||++++...
T Consensus       125 ~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          125 FYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             CCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            124799999875321      3457899999999999999998654

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.41  E-value=1.1e-12  Score=112.56  Aligned_cols=105  Identities=16%  Similarity=0.196  Sum_probs=88.0

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++.+|||||||+|..+..+++..+ ..+++++|+ +.+++.+++++...++.++++++.+|..+.+         ...
T Consensus       181 ~~~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~  249 (360)
T 1tw3_A          181 WTNVRHVLDVGGGKGGFAAAIARRAP-HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL---------PRK  249 (360)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------SSC
T ss_pred             CccCcEEEEeCCcCcHHHHHHHHhCC-CCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCC---------CCC
Confidence            34668999999999999999999886 789999999 9999999999999888878999999986532         235


Q ss_pred             eeEEEEcCCccc-----hHHHHHHHHhccCCCeEEEEeccc
Q 026461          148 FDYAFVDADKDN-----YCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       148 fD~V~~d~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ||+|++....++     ...+++.+.+.|+|||.+++.+..
T Consensus       250 ~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          250 ADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            999998754332     246889999999999988887665

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.41  E-value=3.3e-12  Score=98.25  Aligned_cols=103  Identities=17%  Similarity=0.167  Sum_probs=78.8

Q ss_pred             cHhHHHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           55 APDAGQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        55 ~~~~~~~l~~l~~~--~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      .+....++.. +..  .++.+|||+|||+|..+..++...    +|+++|+++.+++.          .++++++++|+.
T Consensus         7 ~~~~~~l~~~-l~~~~~~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~----------~~~~~~~~~d~~   71 (170)
T 3q87_B            7 GEDTYTLMDA-LEREGLEMKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES----------HRGGNLVRADLL   71 (170)
T ss_dssp             CHHHHHHHHH-HHHHTCCSCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT----------CSSSCEEECSTT
T ss_pred             CccHHHHHHH-HHhhcCCCCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc----------ccCCeEEECChh
Confidence            4555556655 444  567899999999999999999753    99999999999887          356899999987


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcCCcc------------chHHHHHHHHhccCCCeEEEEec
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDADKD------------NYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~~~~------------~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      +.++        .++||+|+++.+..            .....+..+.+.+ |||.+++..
T Consensus        72 ~~~~--------~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~  123 (170)
T 3q87_B           72 CSIN--------QESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLV  123 (170)
T ss_dssp             TTBC--------GGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEE
T ss_pred             hhcc--------cCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEE
Confidence            6322        37999999975432            1346777777777 999988754

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.41  E-value=6.3e-13  Score=112.86  Aligned_cols=103  Identities=8%  Similarity=0.047  Sum_probs=87.5

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEE
Q 026461           72 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  151 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V  151 (238)
                      .+|||+|||+|..+..+++..| ..+++++|+ +.+++.+++++...++.++++++.+|..+.   +      .++||+|
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~------~~~~D~v  237 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEP-SARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQE---V------PSNGDIY  237 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCT-TCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTC---C------CSSCSEE
T ss_pred             CEEEEeCCCchHHHHHHHHHCC-CCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCC---C------CCCCCEE
Confidence            8999999999999999999987 789999999 999999999988877777899999998662   2      3679999


Q ss_pred             EEcCCccc-----hHHHHHHHHhccCCCeEEEEeccccC
Q 026461          152 FVDADKDN-----YCNYHERLMKLLKVGGIAVYDNTLWG  185 (238)
Q Consensus       152 ~~d~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~~  185 (238)
                      ++....++     ...+++.+.+.|+|||.+++.+...+
T Consensus       238 ~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  276 (334)
T 2ip2_A          238 LLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTIS  276 (334)
T ss_dssp             EEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred             EEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence            98764432     24788999999999999998876643

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.40  E-value=1.3e-12  Score=105.47  Aligned_cols=108  Identities=14%  Similarity=0.216  Sum_probs=85.3

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHh
Q 026461           61 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK  140 (238)
Q Consensus        61 ~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~  140 (238)
                      .+..++...++.+|||||||+|..+..++.. + ..+|+++|+++.+++.+++++..    .++++..+|+.+..  +  
T Consensus        34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~--~--  103 (243)
T 3bkw_A           34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH-G-ASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLH--L--  103 (243)
T ss_dssp             HHHHHSCCCTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCC--C--
T ss_pred             HHHHhccccCCCEEEEEcCcCCHHHHHHHHC-C-CCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhcc--C--
Confidence            4444555557789999999999999999986 2 24999999999999999887532    36999999987642  1  


Q ss_pred             cccCCCCeeEEEEcCCc---cchHHHHHHHHhccCCCeEEEEec
Q 026461          141 YSENEGSFDYAFVDADK---DNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       141 ~~~~~~~fD~V~~d~~~---~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                         ..++||+|++....   .....+++.+.++|+|||.+++..
T Consensus       104 ---~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          104 ---PQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFST  144 (243)
T ss_dssp             ---CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---CCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEe
Confidence               24799999987543   345788999999999999999864

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.40  E-value=5.2e-13  Score=109.59  Aligned_cols=110  Identities=14%  Similarity=0.072  Sum_probs=85.7

Q ss_pred             cHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH
Q 026461           55 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV  134 (238)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (238)
                      .+...+.+...+...++.+|||||||+|..+..+++  + ..+|+++|+++.+++.++++.       +++++++|+.+.
T Consensus        19 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~--~-~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~   88 (261)
T 3ege_A           19 DIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN--Q-GLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENL   88 (261)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT--T-TCEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSC
T ss_pred             cHHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh--C-CCEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhC
Confidence            344555555555556788999999999999999997  3 689999999999888776542       699999998764


Q ss_pred             HHHHHhcccCCCCeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEecc
Q 026461          135 LDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       135 l~~~~~~~~~~~~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                       + +     ..++||+|++...   ..+...+++.+.+.|+ ||.+++.+.
T Consensus        89 -~-~-----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~  131 (261)
T 3ege_A           89 -A-L-----PDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTF  131 (261)
T ss_dssp             -C-S-----CTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred             -C-C-----CCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEc
Confidence             1 1     2579999998754   3556889999999999 996666544

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.40  E-value=4.9e-13  Score=114.21  Aligned_cols=110  Identities=19%  Similarity=0.212  Sum_probs=87.1

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHH
Q 026461           58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ  137 (238)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~  137 (238)
                      ...++. .+....+.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.+++++...++.  ++++.+|+.+..  
T Consensus       185 ~~~ll~-~l~~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~~~--  258 (343)
T 2pjd_A          185 SQLLLS-TLTPHTKGKVLDVGCGAGVLSVAFARHSP-KIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFSEV--  258 (343)
T ss_dssp             HHHHHH-HSCTTCCSBCCBTTCTTSHHHHHHHHHCT-TCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTC--
T ss_pred             HHHHHH-hcCcCCCCeEEEecCccCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEccccccc--
Confidence            333443 33233567899999999999999999876 679999999999999999999988764  577888876531  


Q ss_pred             HHhcccCCCCeeEEEEcCCcc--------chHHHHHHHHhccCCCeEEEEe
Q 026461          138 LLKYSENEGSFDYAFVDADKD--------NYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       138 ~~~~~~~~~~fD~V~~d~~~~--------~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                             .++||+|+++...+        ....+++.+.+.|+|||.+++.
T Consensus       259 -------~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~  302 (343)
T 2pjd_A          259 -------KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIV  302 (343)
T ss_dssp             -------CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             -------cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence                   47999999986433        2367888999999999998874

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.40  E-value=1.7e-12  Score=112.06  Aligned_cols=103  Identities=14%  Similarity=0.151  Sum_probs=84.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      ++++|||+| |+|..++.++...+ ..+|+++|+++.+++.|++++...|+. +++++++|+.+.++..     ..++||
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~-~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~-----~~~~fD  243 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGL-PKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDY-----ALHKFD  243 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTC-CSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTT-----TSSCBS
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhh-----ccCCcc
Confidence            568999999 99999999988754 579999999999999999999999986 7999999998733310     136899


Q ss_pred             EEEEcCCc--cchHHHHHHHHhccCCCe-EEEEe
Q 026461          150 YAFVDADK--DNYCNYHERLMKLLKVGG-IAVYD  180 (238)
Q Consensus       150 ~V~~d~~~--~~~~~~~~~~~~~L~~gG-~lv~~  180 (238)
                      +|++|.+.  .....+++.+.+.|+||| ++++.
T Consensus       244 ~Vi~~~p~~~~~~~~~l~~~~~~LkpgG~~~~~~  277 (373)
T 2qm3_A          244 TFITDPPETLEAIRAFVGRGIATLKGPRCAGYFG  277 (373)
T ss_dssp             EEEECCCSSHHHHHHHHHHHHHTBCSTTCEEEEE
T ss_pred             EEEECCCCchHHHHHHHHHHHHHcccCCeEEEEE
Confidence            99999643  224678888999999999 44554

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.39  E-value=1.7e-12  Score=103.49  Aligned_cols=103  Identities=13%  Similarity=0.081  Sum_probs=77.7

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHH----HHcCCCCcEEEEecchhHHHHHHHhccc
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII----KKAGVDHKINFIESEALSVLDQLLKYSE  143 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~----~~~~~~~~v~~~~~d~~~~l~~~~~~~~  143 (238)
                      ..++.+|||||||+|..+..+++..| ..+|+++|+++.+++.+.+..    ...++ ++++++++|+.+. + +     
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~-~~v~~~~~d~~~l-~-~-----   95 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNP-SRLVVALDADKSRMEKISAKAAAKPAKGGL-PNLLYLWATAERL-P-P-----   95 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCT-TEEEEEEESCGGGGHHHHHHHTSCGGGTCC-TTEEEEECCSTTC-C-S-----
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhhhhcCC-CceEEEecchhhC-C-C-----
Confidence            45678999999999999999999876 789999999999888643333    23444 3699999999774 2 1     


Q ss_pred             CCCCeeEEEEcCCc--------cchHHHHHHHHhccCCCeEEEEe
Q 026461          144 NEGSFDYAFVDADK--------DNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       144 ~~~~fD~V~~d~~~--------~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ..+. |.|++....        .+...+++.+.+.|||||.+++.
T Consensus        96 ~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  139 (218)
T 3mq2_A           96 LSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVA  139 (218)
T ss_dssp             CCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEE
T ss_pred             CCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEE
Confidence            1344 777754321        22367889999999999999984

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.39  E-value=2.9e-12  Score=107.87  Aligned_cols=108  Identities=13%  Similarity=0.087  Sum_probs=83.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC------CCCcEEEEecchhHHH--HHHHhc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG------VDHKINFIESEALSVL--DQLLKY  141 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~l--~~~~~~  141 (238)
                      ++.+|||||||+|..+..++.. + ..+|+++|+++.+++.+++++...+      ...+++++++|+.+..  ..+.  
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~--  109 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKG-R-INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFR--  109 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCS--
T ss_pred             CCCEEEEECCCCcHHHHHHHhc-C-CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcc--
Confidence            6779999999999999999873 3 6799999999999999999887642      2346999999987652  0010  


Q ss_pred             ccCCCCeeEEEEcCCcc-------chHHHHHHHHhccCCCeEEEEecc
Q 026461          142 SENEGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                       ...++||+|++....+       ....+++.+.+.|+|||++++...
T Consensus       110 -~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  156 (313)
T 3bgv_A          110 -DPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP  156 (313)
T ss_dssp             -STTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             -cCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence             0135899999875442       235788999999999999998643

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.38  E-value=3e-12  Score=106.75  Aligned_cols=108  Identities=12%  Similarity=0.107  Sum_probs=77.1

Q ss_pred             CCCEEEEEcccccHHHHHHH----hhCCCCCEE--EEEeCCchhHHHHHHHHHHc-CCCCcEE--EEecchhHHHHHHHh
Q 026461           70 NAKKTIEIGVFTGYSLLLTA----LTIPEDGQI--TAIDVNRETYEIGLPIIKKA-GVDHKIN--FIESEALSVLDQLLK  140 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la----~~~~~~~~v--~~iD~~~~~~~~a~~~~~~~-~~~~~v~--~~~~d~~~~l~~~~~  140 (238)
                      ++.+|||||||+|..+..++    ...+ ..+|  +++|+|+++++.|++.+... ++ .+++  +..+++.+.......
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~-~~~v~~~~vD~S~~ml~~a~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~  129 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYP-GVCINNEVVEPSAEQIAKYKELVAKTSNL-ENVKFAWHKETSSEYQSRMLE  129 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHST-TCEEEEEEECSCHHHHHHHHHHHHTCSSC-TTEEEEEECSCHHHHHHHHHT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCC-CceeeEEEEeCCHHHHHHHHHHHHhccCC-CcceEEEEecchhhhhhhhcc
Confidence            45699999999998776544    3333 5544  99999999999999998764 33 3344  456676554322100


Q ss_pred             cccCCCCeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEe
Q 026461          141 YSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       141 ~~~~~~~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                       ++..++||+|++...   ..+....++++.++|||||.+++.
T Consensus       130 -~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~  171 (292)
T 2aot_A          130 -KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLII  171 (292)
T ss_dssp             -TTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEE
T ss_pred             -ccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEE
Confidence             012578999998753   445678999999999999999885

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.38  E-value=2.5e-12  Score=103.83  Aligned_cols=100  Identities=14%  Similarity=0.180  Sum_probs=82.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .++.+|||||||+|..+..++..   +.+|+++|+++.+++.++++.    ...+++++++|+.+..       ...++|
T Consensus        52 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~-------~~~~~f  117 (242)
T 3l8d_A           52 KKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSLP-------FENEQF  117 (242)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBCS-------SCTTCE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcCC-------CCCCCc
Confidence            36779999999999999999986   569999999999999998764    2357999999987641       125799


Q ss_pred             eEEEEcCC---ccchHHHHHHHHhccCCCeEEEEecc
Q 026461          149 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       149 D~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      |+|++...   ..+...+++.+.+.|+|||++++...
T Consensus       118 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~  154 (242)
T 3l8d_A          118 EAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAIL  154 (242)
T ss_dssp             EEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEc
Confidence            99998753   34556889999999999999998763

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.38  E-value=1.9e-13  Score=111.86  Aligned_cols=110  Identities=21%  Similarity=0.117  Sum_probs=82.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCC----------------------------
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV----------------------------  120 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~----------------------------  120 (238)
                      .++.+|||||||+|..+..++....  .+|+++|+++.+++.+++++...+.                            
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  132 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL  132 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence            4557899999999999998887532  4899999999999999998765331                            


Q ss_pred             CCcE-EEEecchhHHHHHHHhcccCCCCeeEEEEcCCcc-------chHHHHHHHHhccCCCeEEEEeccc
Q 026461          121 DHKI-NFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       121 ~~~v-~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ..++ ++.++|+.+..+.. .  ...++||+|++.....       ....+++.+.++|+|||++++.+..
T Consensus       133 ~~~v~~~~~~d~~~~~~~~-~--~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  200 (265)
T 2i62_A          133 RRAIKQVLKCDVTQSQPLG-G--VSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDAL  200 (265)
T ss_dssp             HHHEEEEEECCTTSSSTTT-T--CCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             hhhheeEEEeeeccCCCCC-c--cccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecC
Confidence            0127 89999987653211 0  0127899999875433       4677889999999999999997754

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.38  E-value=3e-12  Score=101.22  Aligned_cols=102  Identities=11%  Similarity=0.069  Sum_probs=81.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .++.+|||+|||+|..+..++...+  .+|+++|+++.+++.+++++..   ..+++++++|+.+. + +     ..++|
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~--~~v~~~D~s~~~~~~a~~~~~~---~~~i~~~~~d~~~~-~-~-----~~~~f  108 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGF--PNVTSVDYSSVVVAAMQACYAH---VPQLRWETMDVRKL-D-F-----PSASF  108 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTC--CCEEEEESCHHHHHHHHHHTTT---CTTCEEEECCTTSC-C-S-----CSSCE
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCC--CcEEEEeCCHHHHHHHHHhccc---CCCcEEEEcchhcC-C-C-----CCCcc
Confidence            4667999999999999999998643  3899999999999999998753   24699999998764 1 1     24789


Q ss_pred             eEEEEcCCc------------------cchHHHHHHHHhccCCCeEEEEecc
Q 026461          149 DYAFVDADK------------------DNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       149 D~V~~d~~~------------------~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      |+|++....                  .....+++.+.++|+|||.+++...
T Consensus       109 D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  160 (215)
T 2pxx_A          109 DVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS  160 (215)
T ss_dssp             EEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             cEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence            999975321                  2346788999999999999998653

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.38  E-value=1.8e-12  Score=106.47  Aligned_cols=104  Identities=15%  Similarity=0.193  Sum_probs=75.1

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhccc
Q 026461           64 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE  143 (238)
Q Consensus        64 ~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~  143 (238)
                      ..+...++.+|||||||+|..+..+++.   ..+|+++|+|+.+++.|++++....  -...+...+.. .....     
T Consensus        39 ~~l~l~~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD~S~~ml~~Ar~~~~~~~--v~~~~~~~~~~-~~~~~-----  107 (261)
T 3iv6_A           39 FLENIVPGSTVAVIGASTRFLIEKALER---GASVTVFDFSQRMCDDLAEALADRC--VTIDLLDITAE-IPKEL-----  107 (261)
T ss_dssp             HTTTCCTTCEEEEECTTCHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTSSSC--CEEEECCTTSC-CCGGG-----
T ss_pred             HhcCCCCcCEEEEEeCcchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhcc--ceeeeeecccc-ccccc-----
Confidence            3445567789999999999999999985   5699999999999999999875431  12233322220 00111     


Q ss_pred             CCCCeeEEEEcCCcc-----chHHHHHHHHhccCCCeEEEEe
Q 026461          144 NEGSFDYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~-----~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                       .++||+|+++...+     .....+..+.++| |||.++++
T Consensus       108 -~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS  147 (261)
T 3iv6_A          108 -AGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRAS  147 (261)
T ss_dssp             -TTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred             -CCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEE
Confidence             47999999986433     3456788888999 99999986

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.38  E-value=1.3e-12  Score=99.82  Aligned_cols=99  Identities=16%  Similarity=0.147  Sum_probs=75.7

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHH-----HHHHhcc
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL-----DQLLKYS  142 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l-----~~~~~~~  142 (238)
                      ..++.+|||+|||+|..+..+++.+++..+++++|+++ +++.           .++++..+|+.+..     +...   
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~---   84 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELVMKALLERV---   84 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHHHHHHHHHH---
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchhhhhhhccC---
Confidence            45677999999999999999999864468999999999 6432           46999999987642     1111   


Q ss_pred             cCCCCeeEEEEcCCcc---ch-----------HHHHHHHHhccCCCeEEEEecc
Q 026461          143 ENEGSFDYAFVDADKD---NY-----------CNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       143 ~~~~~fD~V~~d~~~~---~~-----------~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                       ..++||+|+++....   ..           ..+++.+.++|+|||.+++...
T Consensus        85 -~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (180)
T 1ej0_A           85 -GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF  137 (180)
T ss_dssp             -TTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -CCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence             247899999976432   11           5778888999999999998543

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.38  E-value=2.1e-12  Score=114.90  Aligned_cols=101  Identities=16%  Similarity=0.183  Sum_probs=83.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .++++|||||||+|..++.+++. + ..+|+++|+++ +++.|++++...++.++++++.+|+.+.  .+      .++|
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~-~-~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~--~~------~~~f  225 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV--SL------PEQV  225 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHT-T-CSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTC--CC------SSCE
T ss_pred             cCCCEEEEecCcccHHHHHHHHc-C-CCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhC--cc------CCCe
Confidence            46789999999999999999873 3 57999999998 9999999999999988899999998774  11      3689


Q ss_pred             eEEEEcCC-----ccchHHHHHHHHhccCCCeEEEEe
Q 026461          149 DYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       149 D~V~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      |+|+++..     .......+..+.++|+|||++++.
T Consensus       226 D~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~  262 (480)
T 3b3j_A          226 DIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  262 (480)
T ss_dssp             EEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred             EEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence            99998753     133455666778999999999853

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=99.37  E-value=4.3e-11  Score=97.54  Aligned_cols=148  Identities=16%  Similarity=0.094  Sum_probs=101.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhh------CCCCCEEEEEe-----CCch-------------------hHHHHHHHH---
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALT------IPEDGQITAID-----VNRE-------------------TYEIGLPII---  115 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~------~~~~~~v~~iD-----~~~~-------------------~~~~a~~~~---  115 (238)
                      .-|..|+|+|+..|.+++.++..      .....+|+++|     ..+.                   ..+..++.+   
T Consensus        68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~  147 (257)
T 3tos_A           68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH  147 (257)
T ss_dssp             TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence            45789999999999999997752      12357899999     3221                   112222222   


Q ss_pred             ---HHcCC-CCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCc-cchHHHHHHHHhccCCCeEEEEeccccCccccC
Q 026461          116 ---KKAGV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAV  190 (238)
Q Consensus       116 ---~~~~~-~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~-~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~  190 (238)
                         +..+. .++++++.|++.+.++.+..+ .+.++||+|++|++. ..+..+++.++++|+|||+|++||+.+++.   
T Consensus       148 ~~~~~~g~~~~~i~li~G~~~dTL~~~l~~-~~~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGvIv~DD~~~~~w---  223 (257)
T 3tos_A          148 ECSDFFGHVTQRSVLVEGDVRETVPRYLAE-NPQTVIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAFDELDNPKW---  223 (257)
T ss_dssp             HTTSTTTTSCCSEEEEESCHHHHHHHHHHH-CTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEESSTTCTTC---
T ss_pred             hhhhhcCCCCCcEEEEEecHHHHHHHHHHh-CCCCceEEEEEcCcccchHHHHHHHHHHHhCCCcEEEEcCCCCCCC---
Confidence               23455 378999999999999886443 123579999999975 456678999999999999999999753221   


Q ss_pred             CCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEE
Q 026461          191 PEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITIC  234 (238)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~  234 (238)
                      +         + ..++++    .+..........+|...+...+
T Consensus       224 ~---------G-~~~A~~----ef~~~~~~~i~~~p~~~~~~y~  253 (257)
T 3tos_A          224 P---------G-ENIAMR----KVLGLDHAPLRLLPGRPAPAYL  253 (257)
T ss_dssp             T---------H-HHHHHH----HHTCTTSSCCEECTTCSCCEEE
T ss_pred             h---------H-HHHHHH----HHHhhCCCeEEEccCCCCCEEE
Confidence            0         1 333333    3334556777888888776554

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=99.37  E-value=3e-12  Score=106.31  Aligned_cols=108  Identities=19%  Similarity=0.218  Sum_probs=89.9

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC---C-CCcEEEEecchhHHHHHHHhc
Q 026461           66 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG---V-DHKINFIESEALSVLDQLLKY  141 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---~-~~~v~~~~~d~~~~l~~~~~~  141 (238)
                      ....+|++||-||.|.|..+..++++.+ ..+|+.+|+++..++.+++++...+   + .+|++++.+|+.+++...   
T Consensus        79 ~~~p~pk~VLIiGgGdG~~~revlk~~~-v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~---  154 (294)
T 3o4f_A           79 LAHGHAKHVLIIGGGDGAMLREVTRHKN-VESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQT---  154 (294)
T ss_dssp             HHSSCCCEEEEESCTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCS---
T ss_pred             hhCCCCCeEEEECCCchHHHHHHHHcCC-cceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhc---
Confidence            3456789999999999999999998754 6799999999999999999986421   1 368999999999987643   


Q ss_pred             ccCCCCeeEEEEcCCcc-------chHHHHHHHHhccCCCeEEEEe
Q 026461          142 SENEGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                         .++||+|++|....       ...++++.+.+.|+|||+++..
T Consensus       155 ---~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q  197 (294)
T 3o4f_A          155 ---SQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQ  197 (294)
T ss_dssp             ---SCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEE
T ss_pred             ---cccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEe
Confidence               67999999996321       2368999999999999999985

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.37  E-value=1.4e-11  Score=97.27  Aligned_cols=110  Identities=10%  Similarity=0.110  Sum_probs=83.8

Q ss_pred             cHhHHHHHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461           55 APDAGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA  131 (238)
Q Consensus        55 ~~~~~~~l~~l~~---~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (238)
                      .+.....+...+.   ..++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.+++++...++  +++++++|+
T Consensus        31 ~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~  106 (207)
T 1wy7_A           31 PGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL-G-AKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDV  106 (207)
T ss_dssp             CHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCG
T ss_pred             chHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECch
Confidence            3444444433333   335679999999999999999986 2 35899999999999999999988876  699999998


Q ss_pred             hHHHHHHHhcccCCCCeeEEEEcCCc-----cchHHHHHHHHhccCCCeEEEEe
Q 026461          132 LSVLDQLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       132 ~~~l~~~~~~~~~~~~fD~V~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      .+.          .++||+|+++.+.     .....+++.+.+.+  |+++++.
T Consensus       107 ~~~----------~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~  148 (207)
T 1wy7_A          107 SEF----------NSRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSIH  148 (207)
T ss_dssp             GGC----------CCCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred             HHc----------CCCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEEEE
Confidence            774          3589999998652     23457788888887  6666544

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.37  E-value=3.6e-12  Score=110.05  Aligned_cols=116  Identities=22%  Similarity=0.197  Sum_probs=90.2

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      +.+..+..+..+. ..++.+|||+|||+|..++.++...+ .++|+|+|+++.+++.|++++..+|+.+++++.++|+.+
T Consensus       202 l~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~-~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~  279 (373)
T 3tm4_A          202 LKASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRY-SGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQ  279 (373)
T ss_dssp             CCHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTC-CSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGG
T ss_pred             ccHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhh
Confidence            4555666666666 66778999999999999999998754 569999999999999999999999987789999999988


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCc-------c----chHHHHHHHHhccCCCeEEEE
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADK-------D----NYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~-------~----~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ...       ..++||+|+++.+.       .    .+..+++.+.+.| +|+.+++
T Consensus       280 ~~~-------~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i  328 (373)
T 3tm4_A          280 LSQ-------YVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFI  328 (373)
T ss_dssp             GGG-------TCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEE
T ss_pred             CCc-------ccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEE
Confidence            632       14789999998541       1    1356777777877 4444433

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.36  E-value=7e-12  Score=97.40  Aligned_cols=105  Identities=12%  Similarity=0.096  Sum_probs=83.1

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHH
Q 026461           59 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL  138 (238)
Q Consensus        59 ~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~  138 (238)
                      ..++..+  ..++.+|||+|||+|..+..++..   ..+|+++|+++.+++.+++++      .+++++.+|+.+..  +
T Consensus        37 ~~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~------~~~~~~~~d~~~~~--~  103 (195)
T 3cgg_A           37 ARLIDAM--APRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDF------PEARWVVGDLSVDQ--I  103 (195)
T ss_dssp             HHHHHHH--SCTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHC------TTSEEEECCTTTSC--C
T ss_pred             HHHHHHh--ccCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhC------CCCcEEEcccccCC--C
Confidence            4555555  346789999999999999999986   469999999999999999875      34889999987641  1


Q ss_pred             HhcccCCCCeeEEEEcC-Cc-----cchHHHHHHHHhccCCCeEEEEec
Q 026461          139 LKYSENEGSFDYAFVDA-DK-----DNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       139 ~~~~~~~~~fD~V~~d~-~~-----~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                           ..++||+|++.. ..     .....+++.+.+.|+|||.+++..
T Consensus       104 -----~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~  147 (195)
T 3cgg_A          104 -----SETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGF  147 (195)
T ss_dssp             -----CCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -----CCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEe
Confidence                 247899999973 22     233678899999999999999864

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.36  E-value=1.1e-11  Score=102.61  Aligned_cols=111  Identities=9%  Similarity=0.017  Sum_probs=83.8

Q ss_pred             CCCEEEEEcccc---cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHH--h--cc
Q 026461           70 NAKKTIEIGVFT---GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL--K--YS  142 (238)
Q Consensus        70 ~~~~vLeiG~G~---G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~--~--~~  142 (238)
                      ...+|||||||+   |..+..+++..+ +.+|+++|+++.+++.|++++..   ..+++++.+|+.+....+.  .  +.
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p-~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~~D~~~~~~~~~~~~~~~~  152 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNP-DARVVYVDIDPMVLTHGRALLAK---DPNTAVFTADVRDPEYILNHPDVRRM  152 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCT-TCEEEEEESSHHHHHHHHHHHTT---CTTEEEEECCTTCHHHHHHSHHHHHH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCC-CCEEEEEECChHHHHHHHHhcCC---CCCeEEEEeeCCCchhhhccchhhcc
Confidence            457999999999   988777766666 78999999999999999998843   3579999999976421100  0  00


Q ss_pred             cCCCCeeEEEEcCCcc-----chHHHHHHHHhccCCCeEEEEecccc
Q 026461          143 ENEGSFDYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       143 ~~~~~fD~V~~d~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      ....+||+|++....+     .....++.+.+.|+|||.+++.+...
T Consensus       153 ~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          153 IDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             CCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             CCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence            1125899999875322     25778999999999999999987654

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.36  E-value=4.1e-12  Score=102.28  Aligned_cols=98  Identities=10%  Similarity=0.107  Sum_probs=79.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .++.+|||+|||+|..+..++...+   +|+++|+++.+++.+++++      .+++++.+|+.+..  .      .++|
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~--~------~~~~  101 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRL------PDATLHQGDMRDFR--L------GRKF  101 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCC--C------SSCE
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHcc--c------CCCC
Confidence            4668999999999999999998753   8999999999999998864      35899999987641  1      4789


Q ss_pred             eEEEEcC-Cc------cchHHHHHHHHhccCCCeEEEEeccc
Q 026461          149 DYAFVDA-DK------DNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       149 D~V~~d~-~~------~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      |+|++.. ..      .....+++.+.++|+|||.++++...
T Consensus       102 D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  143 (239)
T 3bxo_A          102 SAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWW  143 (239)
T ss_dssp             EEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred             cEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence            9999532 21      34467889999999999999998644

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.35  E-value=1.2e-11  Score=106.57  Aligned_cols=105  Identities=13%  Similarity=0.113  Sum_probs=80.4

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhccc-------
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE-------  143 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~-------  143 (238)
                      +.+|||+|||+|..++.++..   ..+|+++|+++.+++.|++|+..+++ ++++|+.+|+.+.++.+.....       
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~---~~~V~gvd~~~~ai~~a~~n~~~ng~-~~v~~~~~d~~~~~~~~~~~~~~~~l~~~  289 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARN---FDRVLATEIAKPSVAAAQYNIAANHI-DNVQIIRMAAEEFTQAMNGVREFNRLQGI  289 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGG---SSEEEEECCCHHHHHHHHHHHHHTTC-CSEEEECCCSHHHHHHHSSCCCCTTGGGS
T ss_pred             CCEEEEccCCCCHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECCHHHHHHHHhhcccccccccc
Confidence            578999999999999999985   35999999999999999999999988 4699999999998776521100       


Q ss_pred             --CCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461          144 --NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       144 --~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                        ...+||+|++|.+....   ...+.+.|+++|.|+.-.+
T Consensus       290 ~~~~~~fD~Vv~dPPr~g~---~~~~~~~l~~~g~ivyvsc  327 (369)
T 3bt7_A          290 DLKSYQCETIFVDPPRSGL---DSETEKMVQAYPRILYISC  327 (369)
T ss_dssp             CGGGCCEEEEEECCCTTCC---CHHHHHHHTTSSEEEEEES
T ss_pred             ccccCCCCEEEECcCcccc---HHHHHHHHhCCCEEEEEEC
Confidence              00379999999765432   2334455567777776543

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.35  E-value=8.3e-12  Score=102.58  Aligned_cols=95  Identities=18%  Similarity=0.210  Sum_probs=77.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .++.+|||||||+|..+..++..++ ..+|+++|+++.+++.++++.      .++.+..+|+.+. +      ...++|
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~------~~~~~f  149 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRL-P------FSDTSM  149 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSC-S------BCTTCE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhC-C------CCCCce
Confidence            4677999999999999999999875 679999999999999998763      3578999988654 1      124799


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      |+|++....    ..++.+.++|+|||.+++..
T Consensus       150 D~v~~~~~~----~~l~~~~~~L~pgG~l~~~~  178 (269)
T 1p91_A          150 DAIIRIYAP----CKAEELARVVKPGGWVITAT  178 (269)
T ss_dssp             EEEEEESCC----CCHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEEeCCh----hhHHHHHHhcCCCcEEEEEE
Confidence            999986543    35788899999999988854

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.35  E-value=2.3e-12  Score=102.06  Aligned_cols=96  Identities=17%  Similarity=0.185  Sum_probs=77.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      ++.+|||||||+|..+..+    + ..+|+++|+++.+++.+++++      .+++++++|+.+. +      ...++||
T Consensus        36 ~~~~vLdiG~G~G~~~~~l----~-~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~------~~~~~fD   97 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL----P-YPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEAL-P------FPGESFD   97 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC----C-CSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSC-C------SCSSCEE
T ss_pred             CCCeEEEECCCCCHhHHhC----C-CCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccC-C------CCCCcEE
Confidence            6779999999999998877    2 238999999999999999875      4589999998664 1      1257899


Q ss_pred             EEEEcCC---ccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          150 YAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       150 ~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      +|++...   ..+...+++.+.+.|+|||.+++....
T Consensus        98 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  134 (211)
T 2gs9_A           98 VVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLE  134 (211)
T ss_dssp             EEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecC
Confidence            9998754   335678899999999999999987543

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.35  E-value=8.1e-12  Score=103.77  Aligned_cols=117  Identities=16%  Similarity=0.122  Sum_probs=80.5

Q ss_pred             HhHHHHHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CchhHHHHHHHH-----HHcCCC----C
Q 026461           56 PDAGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV-NRETYEIGLPII-----KKAGVD----H  122 (238)
Q Consensus        56 ~~~~~~l~~l~~---~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~-----~~~~~~----~  122 (238)
                      +....+...+..   ..++++|||+|||+|..++.++.. . ..+|+++|+ ++.+++.+++++     ...++.    +
T Consensus        62 ~~~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~-~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~  139 (281)
T 3bzb_A           62 SGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLA-G-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRA  139 (281)
T ss_dssp             CHHHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHT-T-CSEEEEEECSCHHHHHHHHHHHHTTCC----------C
T ss_pred             cHHHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHc-C-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCC
Confidence            334444444433   246779999999999999998874 2 359999999 899999999999     555554    4


Q ss_pred             cEEEEecchhH----HHHHHHhcccCCCCeeEEEE-cC--CccchHHHHHHHHhccC---C--CeEEEE
Q 026461          123 KINFIESEALS----VLDQLLKYSENEGSFDYAFV-DA--DKDNYCNYHERLMKLLK---V--GGIAVY  179 (238)
Q Consensus       123 ~v~~~~~d~~~----~l~~~~~~~~~~~~fD~V~~-d~--~~~~~~~~~~~~~~~L~---~--gG~lv~  179 (238)
                      ++++...+..+    ....+     ..++||+|++ |.  .......+++.+.++|+   |  ||.+++
T Consensus       140 ~v~~~~~~~~~~~~~~~~~~-----~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v  203 (281)
T 3bzb_A          140 SPKVVPYRWGDSPDSLQRCT-----GLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALV  203 (281)
T ss_dssp             CCEEEECCTTSCTHHHHHHH-----SCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred             CeEEEEecCCCccHHHHhhc-----cCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence            68888555332    22211     1478999987 43  23456788999999999   9  997655

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.34  E-value=5.4e-13  Score=109.74  Aligned_cols=110  Identities=21%  Similarity=0.079  Sum_probs=78.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCC----------------------------
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV----------------------------  120 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~----------------------------  120 (238)
                      .++.+|||||||+|..+..++...  ..+|+++|+|+.+++.|++++.....                            
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~--~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  131 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhh--hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence            355789999999998877665431  24799999999999999998765321                            


Q ss_pred             CCcEE-EEecchhHHHHHHHhcccCCCCeeEEEEcCCc-------cchHHHHHHHHhccCCCeEEEEeccc
Q 026461          121 DHKIN-FIESEALSVLDQLLKYSENEGSFDYAFVDADK-------DNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       121 ~~~v~-~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~-------~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ..++. ++++|+.+..+...   ...++||+|++....       ..+...++++.++|||||.+++.+..
T Consensus       132 ~~~i~~~~~~D~~~~~~~~~---~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~  199 (263)
T 2a14_A          132 RAAVKRVLKCDVHLGNPLAP---AVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL  199 (263)
T ss_dssp             HHHEEEEEECCTTSSSTTTT---CCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             HhhhheEEeccccCCCCCCc---cccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEee
Confidence            01243 78888766322100   014689999986422       34467888889999999999998654

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.34  E-value=1.2e-11  Score=108.52  Aligned_cols=111  Identities=20%  Similarity=0.174  Sum_probs=87.0

Q ss_pred             cHhHH-HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           55 APDAG-QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        55 ~~~~~-~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      .+... .++..+....++.+|||+|||+|..++.++..   ..+|+++|+++.+++.|++++..+++.  ++|+.+|+.+
T Consensus       274 n~~~~e~l~~~~~~~~~~~~VLDlgcG~G~~sl~la~~---~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~  348 (425)
T 2jjq_A          274 NSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKR---GFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDRE  348 (425)
T ss_dssp             BHHHHHHHHHHHHHHCCSSEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTT
T ss_pred             CHHHHHHHHHHhhccCCCCEEEEeeccchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHH
Confidence            34443 34444444556789999999999999999985   459999999999999999999988875  9999999987


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCccchH-HHHHHHHhccCCCeEEEEe
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKDNYC-NYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~~~~-~~~~~~~~~L~~gG~lv~~  180 (238)
                      .++         .+||+|++|.+..... .+++.+ ..|+|+|+++++
T Consensus       349 ~~~---------~~fD~Vv~dPPr~g~~~~~~~~l-~~l~p~givyvs  386 (425)
T 2jjq_A          349 VSV---------KGFDTVIVDPPRAGLHPRLVKRL-NREKPGVIVYVS  386 (425)
T ss_dssp             CCC---------TTCSEEEECCCTTCSCHHHHHHH-HHHCCSEEEEEE
T ss_pred             cCc---------cCCCEEEEcCCccchHHHHHHHH-HhcCCCcEEEEE
Confidence            631         3899999997654443 355555 458999999886

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=99.34  E-value=2.6e-11  Score=103.72  Aligned_cols=121  Identities=15%  Similarity=0.079  Sum_probs=96.8

Q ss_pred             hHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCC-----CcEEEEecch
Q 026461           57 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-----HKINFIESEA  131 (238)
Q Consensus        57 ~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-----~~v~~~~~d~  131 (238)
                      ....+...++...++.+|||+++|.|+-|.++++..+ .+.|+++|+++..++..++++.+.+..     .++.+...|+
T Consensus       135 ~aS~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~-~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~  213 (359)
T 4fzv_A          135 AASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGC-CRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDG  213 (359)
T ss_dssp             GGGHHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTC-EEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCG
T ss_pred             HHHHHHHHHhCCCCCCEEEEecCCccHHHHHHHHhcC-CCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCch
Confidence            4555666666677778999999999999999998765 678999999999999999999988754     4689999999


Q ss_pred             hHHHHHHHhcccCCCCeeEEEEcCCccch---------------------------HHHHHHHHhccCCCeEEEEecccc
Q 026461          132 LSVLDQLLKYSENEGSFDYAFVDADKDNY---------------------------CNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       132 ~~~l~~~~~~~~~~~~fD~V~~d~~~~~~---------------------------~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      ..+.+..      .+.||.|++|++++..                           ..++..++++|||||+||-..+..
T Consensus       214 ~~~~~~~------~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl  287 (359)
T 4fzv_A          214 RKWGELE------GDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL  287 (359)
T ss_dssp             GGHHHHS------TTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             hhcchhc------cccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence            8765433      5799999999765331                           245667778999999999776653

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.32  E-value=1.3e-11  Score=108.67  Aligned_cols=115  Identities=12%  Similarity=0.149  Sum_probs=88.6

Q ss_pred             HHHHHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH
Q 026461           58 AGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV  134 (238)
Q Consensus        58 ~~~~l~~l~~---~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (238)
                      ...++..++.   ..+..+|||+|||+|..++.++..   ..+|+++|+++.+++.|++++..+++. +++|+.+|+.+.
T Consensus       271 ~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~~~~  346 (433)
T 1uwv_A          271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEED  346 (433)
T ss_dssp             HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSC
T ss_pred             HHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCHHHH
Confidence            4444444433   335679999999999999999986   579999999999999999999998875 699999999875


Q ss_pred             HHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          135 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       135 l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ++.+.   ...++||+|++|.+.......++.+. .++|++++.++
T Consensus       347 l~~~~---~~~~~fD~Vv~dPPr~g~~~~~~~l~-~~~p~~ivyvs  388 (433)
T 1uwv_A          347 VTKQP---WAKNGFDKVLLDPARAGAAGVMQQII-KLEPIRIVYVS  388 (433)
T ss_dssp             CSSSG---GGTTCCSEEEECCCTTCCHHHHHHHH-HHCCSEEEEEE
T ss_pred             hhhhh---hhcCCCCEEEECCCCccHHHHHHHHH-hcCCCeEEEEE
Confidence            43211   01468999999987665666666654 47899988775

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=99.31  E-value=5e-12  Score=103.61  Aligned_cols=108  Identities=16%  Similarity=0.104  Sum_probs=80.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-------CC----CCEEEEEeCCc--------------hhHHHHHHHHHHcC-----
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTI-------PE----DGQITAIDVNR--------------ETYEIGLPIIKKAG-----  119 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~-------~~----~~~v~~iD~~~--------------~~~~~a~~~~~~~~-----  119 (238)
                      ++.+|||||+|+|++++.+++.+       |.    ..+|+++|..|              +..+.+++++....     
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            45799999999999999987653       42    25899999987              44456777776521     


Q ss_pred             -----CC---CcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCcc------chHHHHHHHHhccCCCeEEEE
Q 026461          120 -----VD---HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------NYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       120 -----~~---~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~------~~~~~~~~~~~~L~~gG~lv~  179 (238)
                           +.   .+++++.+|+.+.++.+...  ....||+||+|+...      ...++++.+.++|+|||+++.
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~--~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t  211 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDS--LNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT  211 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGG--GTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccc--cCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence                 21   35789999999988765210  013899999997321      257899999999999999985

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.31  E-value=2.1e-11  Score=95.83  Aligned_cols=92  Identities=14%  Similarity=0.193  Sum_probs=73.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.+++++.      +++++++|+.+.          .++|
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~----------~~~~  111 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLL-G-AESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEI----------SGKY  111 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHT-T-BSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGC----------CCCE
T ss_pred             CCCCEEEEEeCCccHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHC----------CCCe
Confidence            36679999999999999999986 3 4689999999999999999864      589999998774          3689


Q ss_pred             eEEEEcCCcc-----chHHHHHHHHhccCCCeEEEEe
Q 026461          149 DYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       149 D~V~~d~~~~-----~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      |+|+++.+..     ....+++.+.+.+  |+++++.
T Consensus       112 D~v~~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~~~  146 (200)
T 1ne2_A          112 DTWIMNPPFGSVVKHSDRAFIDKAFETS--MWIYSIG  146 (200)
T ss_dssp             EEEEECCCC-------CHHHHHHHHHHE--EEEEEEE
T ss_pred             eEEEECCCchhccCchhHHHHHHHHHhc--CcEEEEE
Confidence            9999986532     2346788888887  6665554

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.30  E-value=9.7e-12  Score=101.86  Aligned_cols=95  Identities=18%  Similarity=0.232  Sum_probs=76.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      ++.+|||||||+|..+..+++.   ..+|+++|+++.+++.++++..     .  .++.+|+.+..  +     ..++||
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~-----~--~~~~~d~~~~~--~-----~~~~fD  116 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGV-----K--NVVEAKAEDLP--F-----PSGAFE  116 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTC-----S--CEEECCTTSCC--S-----CTTCEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcC-----C--CEEECcHHHCC--C-----CCCCEE
Confidence            6789999999999999999985   4699999999999999998743     1  27888876541  1     257899


Q ss_pred             EEEEcCC----ccchHHHHHHHHhccCCCeEEEEec
Q 026461          150 YAFVDAD----KDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       150 ~V~~d~~----~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      +|++...    ..+...+++.+.+.|+|||.+++..
T Consensus       117 ~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  152 (260)
T 2avn_A          117 AVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATV  152 (260)
T ss_dssp             EEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEe
Confidence            9998643    2346788999999999999999854

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.30  E-value=2.2e-11  Score=100.71  Aligned_cols=162  Identities=16%  Similarity=0.140  Sum_probs=100.3

Q ss_pred             HhhhhcCCCCcHHHHHHHHhccCCCCCChHHHHHHH-HHhcCCCCCccCcHhHHHHHHH-HHhhcCCCEEEEEcccccH-
Q 026461            7 QAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRD-VTADHPWAMMGTAPDAGQLMAM-LLRLVNAKKTIEIGVFTGY-   83 (238)
Q Consensus         7 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~vLeiG~G~G~-   83 (238)
                      +-|.......-..+..++...    ...+.+.++.. .+...  ..+.-++..-..+.. ++...++.+|+|+|||+|. 
T Consensus        46 ~r~~~~~~~~~~~y~~~l~~~----~~~~e~~~l~~~lt~~~--t~FfRd~~~f~~l~~~llp~~~~~rIld~GCgTGee  119 (274)
T 1af7_A           46 RRLRALGLDDFGRYLSMLEAN----QNSAEWQAFINALTTNL--TAFFREAHHFPILAEHARRRHGEYRVWSAAASTGEE  119 (274)
T ss_dssp             HHHHHHTCCCHHHHHHHHHHC----TTCTHHHHHHHHHCCCC--CCTTTTTTHHHHHHHHHHHSCSCEEEEESCCTTTHH
T ss_pred             HHHHHcCCCCHHHHHHHHccC----CCHHHHHHHHHHHhhcC--ccccCChHHHHHHHHHccCCCCCcEEEEeeccCChh
Confidence            344444555556666666541    22344544433 32222  222234444444443 3332245699999999998 


Q ss_pred             ---HHHHHHhhCCC---CCEEEEEeCCchhHHHHHHHHH--------------H---------cC-------CCCcEEEE
Q 026461           84 ---SLLLTALTIPE---DGQITAIDVNRETYEIGLPIIK--------------K---------AG-------VDHKINFI  127 (238)
Q Consensus        84 ---~t~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~--------------~---------~~-------~~~~v~~~  127 (238)
                         .++.+++.++.   +.+|+|+|+|+.+++.|++++-              +         .+       +..+|+|.
T Consensus       120 ~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~  199 (274)
T 1af7_A          120 PYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFS  199 (274)
T ss_dssp             HHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEE
T ss_pred             HHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEE
Confidence               55666666442   2589999999999999998641              0         00       01368999


Q ss_pred             ecchhHHHHHHHhcccCCCCeeEEEEcCCcc-----chHHHHHHHHhccCCCeEEEEe
Q 026461          128 ESEALSVLDQLLKYSENEGSFDYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       128 ~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~-----~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ++|..+.  .+    +..++||+|++.....     .....++.+.+.|+|||++++.
T Consensus       200 ~~dl~~~--~~----~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          200 SVNLLEK--QY----NVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             ECCTTCS--SC----CCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ecccCCC--CC----CcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            9998762  11    0136899999975432     2357788889999999999984

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.29  E-value=1.8e-11  Score=100.66  Aligned_cols=165  Identities=15%  Similarity=0.166  Sum_probs=100.4

Q ss_pred             CCCcHHHHHHHHhccCCCCCChHHHHHHHHHhcCCCCC-ccCcHhHHHHHHH----HHhhcCCCEEEEEcccc--cHHHH
Q 026461           14 LLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAM-MGTAPDAGQLMAM----LLRLVNAKKTIEIGVFT--GYSLL   86 (238)
Q Consensus        14 ~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~----l~~~~~~~~vLeiG~G~--G~~t~   86 (238)
                      ....-++++|+.-..   ...+.=+++-+...+. ++. ..+......++..    +.......+|||||||+  +.++.
T Consensus        21 ~p~~aR~yd~~LgGk---~n~~~Dr~~~~~~~~~-~P~~~~~a~~nr~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~   96 (277)
T 3giw_A           21 SAHSARIYDYIIGGK---DYYPADKEAGDAMSRE-WPALPVHMRANRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLH   96 (277)
T ss_dssp             SCCHHHHHHHHTTCS---CCCHHHHHHHHHHHHH-CTTHHHHHHHHHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHH
T ss_pred             CCCcchhheeecCCc---cCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHhccccCCCEEEEeCCCCCcccHHH
Confidence            345579999998522   2222222222222211 111 1122333344443    33233557999999997  55566


Q ss_pred             HHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee-----EEEEcCCcc---
Q 026461           87 LTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD-----YAFVDADKD---  158 (238)
Q Consensus        87 ~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD-----~V~~d~~~~---  158 (238)
                      .+++...+..+|+++|.|+.+++.|++.+...+ ..+++|+++|+.+....+..- ...+.||     .|++.+..+   
T Consensus        97 ~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~~~~~~~l~~~-~~~~~~D~~~p~av~~~avLH~l~  174 (277)
T 3giw_A           97 EIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADMLDPASILDAP-ELRDTLDLTRPVALTVIAIVHFVL  174 (277)
T ss_dssp             HHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCTTCHHHHHTCH-HHHTTCCTTSCCEEEEESCGGGSC
T ss_pred             HHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEecccChhhhhccc-ccccccCcCCcchHHhhhhHhcCC
Confidence            666654348999999999999999999886543 247999999998763221000 0013455     466654322   


Q ss_pred             c---hHHHHHHHHhccCCCeEEEEecccc
Q 026461          159 N---YCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       159 ~---~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      .   ....+..+.+.|+|||+|++.....
T Consensus       175 d~~~p~~~l~~l~~~L~PGG~Lvls~~~~  203 (277)
T 3giw_A          175 DEDDAVGIVRRLLEPLPSGSYLAMSIGTA  203 (277)
T ss_dssp             GGGCHHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred             chhhHHHHHHHHHHhCCCCcEEEEEeccC
Confidence            2   3468899999999999999987654

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.29  E-value=1.4e-11  Score=96.64  Aligned_cols=99  Identities=16%  Similarity=0.190  Sum_probs=71.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHH------------
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL------------  135 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l------------  135 (238)
                      .+..+|||+|||+|..+..+++.+++ .++|+++|+++..           .. .+++++++|+.+..            
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~-~~v~~~~~d~~~~~~~~~~~~~~i~~   88 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PI-PNVYFIQGEIGKDNMNNIKNINYIDN   88 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC-TTCEEEECCTTTTSSCCC--------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CC-CCceEEEccccchhhhhhcccccccc
Confidence            45679999999999999999998763 5899999999842           12 45889999886542            


Q ss_pred             -------HHHHhcccCCCCeeEEEEcCCccc-----h---------HHHHHHHHhccCCCeEEEEe
Q 026461          136 -------DQLLKYSENEGSFDYAFVDADKDN-----Y---------CNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       136 -------~~~~~~~~~~~~fD~V~~d~~~~~-----~---------~~~~~~~~~~L~~gG~lv~~  180 (238)
                             +.... ....++||+|+++.....     .         ...++.+.++|+|||.+++.
T Consensus        89 ~~~~~~~~~~~~-~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~  153 (201)
T 2plw_A           89 MNNNSVDYKLKE-ILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVK  153 (201)
T ss_dssp             ---CHHHHHHHH-HHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccchhhHHHHHh-hcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence                   00000 012469999999854322     1         12567788999999999985

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.29  E-value=5.8e-12  Score=104.77  Aligned_cols=111  Identities=15%  Similarity=0.048  Sum_probs=76.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc-----------------CCC-----------
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-----------------GVD-----------  121 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-----------------~~~-----------  121 (238)
                      ++.+|||||||+|..+..++.. + ..+|+++|+++.+++.|++++...                 +..           
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  148 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACS-H-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  148 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGG-G-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhcc-C-CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence            5679999999999955444432 2 569999999999999998866431                 100           


Q ss_pred             -CcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCc-------cchHHHHHHHHhccCCCeEEEEeccc
Q 026461          122 -HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-------DNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       122 -~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~-------~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                       ..++++.+|+.+.++. .......++||+|++....       ......++.+.++|||||.+++...+
T Consensus       149 ~~~~~~~~~D~~~~~~~-~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~  217 (289)
T 2g72_A          149 ARVKRVLPIDVHQPQPL-GAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGAL  217 (289)
T ss_dssp             HHEEEEECCCTTSSSTT-CSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             hhhceEEecccCCCCCc-cccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence             0156777787663221 0000123579999987542       24577889999999999999997543

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.28  E-value=2.6e-11  Score=100.91  Aligned_cols=99  Identities=12%  Similarity=0.064  Sum_probs=77.0

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      .++.....+...+...++.+|||||||+|..+..+++.   ..+|+++|+++.+++.+++++...+..++++++++|+.+
T Consensus        12 ~d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~   88 (285)
T 1zq9_A           12 KNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLK   88 (285)
T ss_dssp             CCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTT
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceec
Confidence            45555555555555567789999999999999999987   359999999999999999998776665679999999976


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCccchHHHH
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKDNYCNYH  164 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~  164 (238)
                      .  .       ...||+|+.+.+.....+.+
T Consensus        89 ~--~-------~~~fD~vv~nlpy~~~~~~~  110 (285)
T 1zq9_A           89 T--D-------LPFFDTCVANLPYQISSPFV  110 (285)
T ss_dssp             S--C-------CCCCSEEEEECCGGGHHHHH
T ss_pred             c--c-------chhhcEEEEecCcccchHHH
Confidence            5  1       25899999986654443333

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.27  E-value=3.2e-11  Score=97.90  Aligned_cols=145  Identities=8%  Similarity=-0.031  Sum_probs=101.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      ..+.+|||||||.|-.++.++...+ ..+|+++|+++.+++.+++++..+|+.  .++.+.|.....+        .++|
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p-~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~~~p--------~~~~  199 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPA-ETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLEDRL--------DEPA  199 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCT-TCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTTSCC--------CSCC
T ss_pred             CCCceeeeeccCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeecccCC--------CCCc
Confidence            5588999999999999999988655 899999999999999999999999874  6788887655422        6899


Q ss_pred             eEEEEcCCccchH-----HHHHHHHhccCCCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEE
Q 026461          149 DYAFVDADKDNYC-----NYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLS  223 (238)
Q Consensus       149 D~V~~d~~~~~~~-----~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  223 (238)
                      |++++.-..+...     ..+ .+.+.|+++|++|--+..   .+......        ....+.+.++......++...
T Consensus       200 DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~k---sl~Grs~g--------m~~~Y~~~~e~~~~~~g~~~~  267 (281)
T 3lcv_B          200 DVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPTK---SLGQRSKG--------MFQNYSQSFESQARERSCRIQ  267 (281)
T ss_dssp             SEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEECC----------C--------HHHHHHHHHHHHHHHHTCCEE
T ss_pred             chHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccch---hhcCCCcc--------hhhHHHHHHHHHHHhcCCcee
Confidence            9999875443332     344 677899999998865541   11112222        444455555554444445666


Q ss_pred             eeecCCeeEEEEE
Q 026461          224 HVALGDGITICRR  236 (238)
Q Consensus       224 ~lp~~~G~~i~~~  236 (238)
                      .+-+++-+.++.+
T Consensus       268 ~~~~~nEl~y~i~  280 (281)
T 3lcv_B          268 RLEIGNELIYVIQ  280 (281)
T ss_dssp             EEEETTEEEEEEC
T ss_pred             eeeecCeeEEEec
Confidence            6667776655544

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.27  E-value=2.3e-11  Score=95.37  Aligned_cols=98  Identities=19%  Similarity=0.216  Sum_probs=69.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhc-c-cC
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKY-S-EN  144 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~-~-~~  144 (238)
                      .++.+|||+|||+|.++..+++.   .++|+++|+++..           .. .+++++++|+.+.  ...+... + ..
T Consensus        24 ~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~-----------~~-~~v~~~~~D~~~~~~~~~~~~~~~~~~   88 (191)
T 3dou_A           24 RKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME-----------EI-AGVRFIRCDIFKETIFDDIDRALREEG   88 (191)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC-----------CC-TTCEEEECCTTSSSHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc-----------cC-CCeEEEEccccCHHHHHHHHHHhhccc
Confidence            45689999999999999999986   6899999999852           22 4699999998652  1111000 0 00


Q ss_pred             CCCeeEEEEcCCccc--------------hHHHHHHHHhccCCCeEEEEec
Q 026461          145 EGSFDYAFVDADKDN--------------YCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~--------------~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      .++||+|++|..+..              ....++.+.++|+|||.+++.-
T Consensus        89 ~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~  139 (191)
T 3dou_A           89 IEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQ  139 (191)
T ss_dssp             CSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence            149999999864311              1345666779999999999753

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.25  E-value=2.9e-12  Score=103.58  Aligned_cols=97  Identities=15%  Similarity=0.150  Sum_probs=68.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe-cchhHHH-HHHHhcccCCCC
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVL-DQLLKYSENEGS  147 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~l-~~~~~~~~~~~~  147 (238)
                      .+++|||||||+|..+..+++. . ..+|+++|+++.+++.++++.      .++.... .++.... ..+     ....
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~-g-~~~V~gvDis~~ml~~a~~~~------~~~~~~~~~~~~~~~~~~~-----~~~~  103 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQN-G-AKLVYALDVGTNQLAWKIRSD------ERVVVMEQFNFRNAVLADF-----EQGR  103 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-T-CSEEEEECSSCCCCCHHHHTC------TTEEEECSCCGGGCCGGGC-----CSCC
T ss_pred             CCCEEEEEccCCCHHHHHHHhc-C-CCEEEEEcCCHHHHHHHHHhC------ccccccccceEEEeCHhHc-----CcCC
Confidence            4569999999999999999986 2 359999999999999877642      2233221 2222111 111     1123


Q ss_pred             eeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ||.+.+|........++..+.+.|+|||.+++
T Consensus       104 ~d~~~~D~v~~~l~~~l~~i~rvLkpgG~lv~  135 (232)
T 3opn_A          104 PSFTSIDVSFISLDLILPPLYEILEKNGEVAA  135 (232)
T ss_dssp             CSEEEECCSSSCGGGTHHHHHHHSCTTCEEEE
T ss_pred             CCEEEEEEEhhhHHHHHHHHHHhccCCCEEEE
Confidence            67777776555668899999999999998887

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.24  E-value=3.8e-11  Score=102.52  Aligned_cols=117  Identities=18%  Similarity=0.179  Sum_probs=89.9

Q ss_pred             CcHhHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHhhCCCC----CEEEEEeCCchhHHHHHHHHHHcCCCCcEE
Q 026461           54 TAPDAGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPED----GQITAIDVNRETYEIGLPIIKKAGVDHKIN  125 (238)
Q Consensus        54 ~~~~~~~~l~~l~~----~~~~~~vLeiG~G~G~~t~~la~~~~~~----~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~  125 (238)
                      .......++..++.    ..++.+|||+|||+|..+..+++.++..    .+++|+|+++.+++.|+.++...|+  +++
T Consensus       110 TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~  187 (344)
T 2f8l_A          110 TPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMT  187 (344)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCE
T ss_pred             ChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--Cce
Confidence            44556666555543    2345699999999999999999887532    7899999999999999999988887  488


Q ss_pred             EEecchhHHHHHHHhcccCCCCeeEEEEcCCccch---------------------HHHHHHHHhccCCCeEEEEe
Q 026461          126 FIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY---------------------CNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       126 ~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~---------------------~~~~~~~~~~L~~gG~lv~~  180 (238)
                      +.++|+....        ..++||+|+.+.+....                     ..++..+.+.|+|||.+++-
T Consensus       188 i~~~D~l~~~--------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v  255 (344)
T 2f8l_A          188 LLHQDGLANL--------LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFL  255 (344)
T ss_dssp             EEESCTTSCC--------CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEECCCCCcc--------ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEE
Confidence            9999986632        14789999998652111                     25788889999999987763

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.24  E-value=3.9e-11  Score=95.65  Aligned_cols=101  Identities=20%  Similarity=0.247  Sum_probs=79.0

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHh
Q 026461           61 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK  140 (238)
Q Consensus        61 ~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~  140 (238)
                      .+..+....++.+|||||||+|..+..++..       +++|+++.+++.++++        +++++.+|+.+. + +  
T Consensus        38 ~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~-~-~--   98 (219)
T 1vlm_A           38 ELQAVKCLLPEGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR--------GVFVLKGTAENL-P-L--   98 (219)
T ss_dssp             HHHHHHHHCCSSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT--------TCEEEECBTTBC-C-S--
T ss_pred             HHHHHHHhCCCCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc--------CCEEEEcccccC-C-C--
Confidence            3344444555889999999999999988752       9999999999999876        478899988654 1 1  


Q ss_pred             cccCCCCeeEEEEcCCc---cchHHHHHHHHhccCCCeEEEEeccc
Q 026461          141 YSENEGSFDYAFVDADK---DNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       141 ~~~~~~~fD~V~~d~~~---~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                         ..++||+|++....   .....+++.+.+.|+|||.+++....
T Consensus        99 ---~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  141 (219)
T 1vlm_A           99 ---KDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVD  141 (219)
T ss_dssp             ---CTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ---CCCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeC
Confidence               24689999987543   34578899999999999999987543

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.23  E-value=1.1e-11  Score=108.25  Aligned_cols=101  Identities=15%  Similarity=0.164  Sum_probs=75.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .++.+|||||||+|..+..+++.   ..+|+++|+++.+++.|++.    +......++..+..+.++..      .++|
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~------~~~f  172 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRT------EGPA  172 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHT---TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHH------HCCE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHc---CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccC------CCCE
Confidence            35679999999999999999985   45999999999999998865    43322222222222333321      4899


Q ss_pred             eEEEEcCCc---cchHHHHHHHHhccCCCeEEEEecc
Q 026461          149 DYAFVDADK---DNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       149 D~V~~d~~~---~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      |+|++....   .+...+++.+.++|+|||++++...
T Consensus       173 D~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  209 (416)
T 4e2x_A          173 NVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDP  209 (416)
T ss_dssp             EEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence            999987643   3567889999999999999999743

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.23  E-value=4.1e-12  Score=105.63  Aligned_cols=115  Identities=21%  Similarity=0.107  Sum_probs=80.7

Q ss_pred             CcHhHHHHHHHHHhh---cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEE-ec
Q 026461           54 TAPDAGQLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI-ES  129 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~---~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~-~~  129 (238)
                      +++...++...+...   .++++|||||||+|..|..+++. + ..+|+++|+++.+++.+.+.      ..++... ..
T Consensus        66 vsrg~~Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~-g-a~~V~aVDvs~~mL~~a~r~------~~rv~~~~~~  137 (291)
T 3hp7_A           66 VSRGGLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQN-G-AKLVYAVDVGTNQLVWKLRQ------DDRVRSMEQY  137 (291)
T ss_dssp             SSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEECSSSSCSCHHHHT------CTTEEEECSC
T ss_pred             ccchHHHHHHHHHhcCCCccccEEEecCCCccHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHh------Ccccceeccc
Confidence            445555555555433   24569999999999999999885 2 57999999999999875432      1344433 34


Q ss_pred             chhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          130 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       130 d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ++.......    .+..+||+|++|.........+..+.++|+|||.+++-
T Consensus       138 ni~~l~~~~----l~~~~fD~v~~d~sf~sl~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          138 NFRYAEPVD----FTEGLPSFASIDVSFISLNLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             CGGGCCGGG----CTTCCCSEEEECCSSSCGGGTHHHHHHHSCTTCEEEEE
T ss_pred             Cceecchhh----CCCCCCCEEEEEeeHhhHHHHHHHHHHHcCcCCEEEEE
Confidence            443321110    11245999999987777888999999999999988773

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=99.23  E-value=1.1e-10  Score=99.88  Aligned_cols=148  Identities=15%  Similarity=0.074  Sum_probs=105.0

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC---C----CCcEEEEecchhHHHHHHHh
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG---V----DHKINFIESEALSVLDQLLK  140 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---~----~~~v~~~~~d~~~~l~~~~~  140 (238)
                      ..+|++||-||.|.|..+..++++ + ..+|+.||+++..++.+++++....   +    .++++++.+|+.+++....+
T Consensus       203 ~~~pkrVLIIGgGdG~~~revlkh-~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~  280 (381)
T 3c6k_A          203 DYTGKDVLILGGGDGGILCEIVKL-K-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAK  280 (381)
T ss_dssp             CCTTCEEEEEECTTCHHHHHHHTT-C-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHH
T ss_pred             cCCCCeEEEECCCcHHHHHHHHhc-C-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhh
Confidence            346789999999999999999986 4 4799999999999999999874311   1    14689999999999876543


Q ss_pred             cccCCCCeeEEEEcCCc---c----------chHHHHHHHHhccCCCeEEEEeccccCccccCCCCCCCCCcccchHHHH
Q 026461          141 YSENEGSFDYAFVDADK---D----------NYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAI  207 (238)
Q Consensus       141 ~~~~~~~fD~V~~d~~~---~----------~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  207 (238)
                      +   .+.||+|++|...   .          ...++++.+.+.|+|||+++...-..       .          .....
T Consensus       281 ~---~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~-------~----------~~~~~  340 (381)
T 3c6k_A          281 E---GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCV-------N----------LTEAL  340 (381)
T ss_dssp             H---TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEET-------T----------CHHHH
T ss_pred             c---cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCC-------c----------chhHH
Confidence            3   5789999999521   0          12577889999999999999853211       0          11224


Q ss_pred             HHHHHHhhcC-CCeeE----Eeee---cCCeeEEEEEc
Q 026461          208 LDLNRSLADD-PRVQL----SHVA---LGDGITICRRI  237 (238)
Q Consensus       208 ~~~~~~l~~~-~~~~~----~~lp---~~~G~~i~~~~  237 (238)
                      ..+.+.+.+- +.+..    ..+|   -..|+.++.|+
T Consensus       341 ~~i~~tl~~vF~~v~~~~~~~~VPSy~~~W~F~~aSK~  378 (381)
T 3c6k_A          341 SLYEEQLGRLYCPVEFSKEIVCVPSYLELWVFYTVWKK  378 (381)
T ss_dssp             HHHHHHHTTSSSCEEEEEEEECCGGGSSCEEEEEEEEC
T ss_pred             HHHHHHHHHhCCcceEeeEEEEecCCCCceeeeEEECC
Confidence            5555556553 33322    3344   34688888876

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.22  E-value=1.8e-11  Score=104.64  Aligned_cols=105  Identities=13%  Similarity=0.072  Sum_probs=80.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..+..+|||||||+|..+..+++.+| ..+++++|+ +..+.  ++++...+..++++++.+|+.+.   +      + +
T Consensus       182 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~---~------p-~  247 (348)
T 3lst_A          182 FPATGTVADVGGGRGGFLLTVLREHP-GLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLRE---V------P-H  247 (348)
T ss_dssp             CCSSEEEEEETCTTSHHHHHHHHHCT-TEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTC---C------C-C
T ss_pred             ccCCceEEEECCccCHHHHHHHHHCC-CCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCC---C------C-C
Confidence            34567999999999999999999987 789999999 44444  43344445567899999998621   1      3 9


Q ss_pred             eeEEEEcCCccc-----hHHHHHHHHhccCCCeEEEEeccccCc
Q 026461          148 FDYAFVDADKDN-----YCNYHERLMKLLKVGGIAVYDNTLWGG  186 (238)
Q Consensus       148 fD~V~~d~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (238)
                      ||+|++....++     ....++++.+.|+|||.+++.+...+.
T Consensus       248 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~  291 (348)
T 3lst_A          248 ADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPE  291 (348)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCS
T ss_pred             CcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence            999998754332     257899999999999999987766543

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.22  E-value=3.1e-10  Score=91.21  Aligned_cols=144  Identities=10%  Similarity=0.007  Sum_probs=96.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ...+.+|||||||.|-.++.+.   + ..+|+++|+++.+++.+++++...+  .+.++.++|.....+        .++
T Consensus       103 ~~~p~~VLDlGCG~gpLal~~~---~-~~~y~a~DId~~~i~~ar~~~~~~g--~~~~~~v~D~~~~~~--------~~~  168 (253)
T 3frh_A          103 AETPRRVLDIACGLNPLALYER---G-IASVWGCDIHQGLGDVITPFAREKD--WDFTFALQDVLCAPP--------AEA  168 (253)
T ss_dssp             SCCCSEEEEETCTTTHHHHHHT---T-CSEEEEEESBHHHHHHHHHHHHHTT--CEEEEEECCTTTSCC--------CCB
T ss_pred             CCCCCeEEEecCCccHHHHHhc---c-CCeEEEEeCCHHHHHHHHHHHHhcC--CCceEEEeecccCCC--------CCC
Confidence            3578899999999999999877   3 7899999999999999999998877  357889888765522        579


Q ss_pred             eeEEEEcCCccch-----HHHHHHHHhccCCCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeE
Q 026461          148 FDYAFVDADKDNY-----CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQL  222 (238)
Q Consensus       148 fD~V~~d~~~~~~-----~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  222 (238)
                      ||+|++.-..+..     ...+ .+...|+++|++|--++-   .+......        .....++.++.......+..
T Consensus       169 ~DvvLllk~lh~LE~q~~~~~~-~ll~aL~~~~vvVsfPtk---sl~Gr~~g--------m~~~Y~~~~e~~~~~~~~~~  236 (253)
T 3frh_A          169 GDLALIFKLLPLLEREQAGSAM-ALLQSLNTPRMAVSFPTR---SLGGRGKG--------MEANYAAWFEGGLPAEFEIE  236 (253)
T ss_dssp             CSEEEEESCHHHHHHHSTTHHH-HHHHHCBCSEEEEEEECC----------------------CHHHHHHHHSCTTEEEE
T ss_pred             cchHHHHHHHHHhhhhchhhHH-HHHHHhcCCCEEEEcChH---HhcCCCcc--------hhhHHHHHHHHHhhccchhh
Confidence            9999876432222     2233 666799999988865421   11112211        11224444444444445556


Q ss_pred             EeeecCCeeEEEEEc
Q 026461          223 SHVALGDGITICRRI  237 (238)
Q Consensus       223 ~~lp~~~G~~i~~~~  237 (238)
                      ..+-+++-+....++
T Consensus       237 ~~~~~~nEl~~~i~~  251 (253)
T 3frh_A          237 DKKTIGTELIYLIKK  251 (253)
T ss_dssp             EEEEETTEEEEEEEE
T ss_pred             hheecCceEEEEEec
Confidence            667788777766654

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.22  E-value=1.2e-10  Score=91.00  Aligned_cols=100  Identities=11%  Similarity=0.141  Sum_probs=71.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCC--------CEEEEEeCCchhHHHHHHHHHHcCCCCcEEEE-ecchhHHHH--H
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPED--------GQITAIDVNRETYEIGLPIIKKAGVDHKINFI-ESEALSVLD--Q  137 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~--------~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~l~--~  137 (238)
                      .++.+|||+|||+|..+..+++.++..        ++|+++|+++..           .. .+++++ .+|+.+...  .
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~~d~~~~~~~~~   88 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGATFLCPADVTDPRTSQR   88 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCEEECSCCTTSHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCeEEEeccCCCHHHHHH
Confidence            456799999999999999999987633        899999999842           12 358888 888765321  1


Q ss_pred             HHhcccCCCCeeEEEEcCCccc-------h-------HHHHHHHHhccCCCeEEEEec
Q 026461          138 LLKYSENEGSFDYAFVDADKDN-------Y-------CNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       138 ~~~~~~~~~~fD~V~~d~~~~~-------~-------~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      .... ...++||+|+++.....       .       ...++.+.++|+|||.+++..
T Consensus        89 ~~~~-~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  145 (196)
T 2nyu_A           89 ILEV-LPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT  145 (196)
T ss_dssp             HHHH-SGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHh-cCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence            1000 11358999998753211       1       367788889999999999864

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.21  E-value=4.6e-10  Score=96.11  Aligned_cols=105  Identities=17%  Similarity=0.113  Sum_probs=84.0

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ....++|||||||+|..+..+++.+| ..+++..|. |+.++.|++++...+ .++|+++.+|..+.         ....
T Consensus       177 ~~~~~~v~DvGgG~G~~~~~l~~~~p-~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~---------~~~~  244 (353)
T 4a6d_A          177 LSVFPLMCDLGGGAGALAKECMSLYP-GCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKD---------PLPE  244 (353)
T ss_dssp             GGGCSEEEEETCTTSHHHHHHHHHCS-SCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTS---------CCCC
T ss_pred             cccCCeEEeeCCCCCHHHHHHHHhCC-CceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccC---------CCCC
Confidence            44567999999999999999999998 889999998 889999998876544 57899999998653         1357


Q ss_pred             eeEEEEcCCccc-----hHHHHHHHHhccCCCeEEEEecccc
Q 026461          148 FDYAFVDADKDN-----YCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       148 fD~V~~d~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      +|++++....++     ...+++++.+.|+|||.+++.+...
T Consensus       245 ~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~  286 (353)
T 4a6d_A          245 ADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLL  286 (353)
T ss_dssp             CSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCC
T ss_pred             ceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeee
Confidence            899998754333     3567899999999999888776654

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.20  E-value=8.2e-11  Score=98.57  Aligned_cols=97  Identities=13%  Similarity=0.124  Sum_probs=73.0

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      .++.....+...+...++.+|||||||+|..+..+++.   ..+|+++|+++.+++.+++++...+. ++++++.+|+.+
T Consensus        26 ~~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~  101 (299)
T 2h1r_A           26 KNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIK  101 (299)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCS
T ss_pred             cCHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhh
Confidence            45555555555566667789999999999999999975   46999999999999999999987776 569999999876


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCccchHHH
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKDNYCNY  163 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~  163 (238)
                      ..         .++||+|+++.+.......
T Consensus       102 ~~---------~~~~D~Vv~n~py~~~~~~  122 (299)
T 2h1r_A          102 TV---------FPKFDVCTANIPYKISSPL  122 (299)
T ss_dssp             SC---------CCCCSEEEEECCGGGHHHH
T ss_pred             CC---------cccCCEEEEcCCcccccHH
Confidence            51         3589999998765444433

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.20  E-value=1.6e-11  Score=97.98  Aligned_cols=97  Identities=13%  Similarity=0.087  Sum_probs=76.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .++.+|||+|||+|..+..++.. +  .+++++|+++.+++.+++++        .++..+|+.+....     ...++|
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~-~--~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~-----~~~~~f   94 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKEN-G--TRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMP-----YEEEQF   94 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTT-T--CEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCC-----SCTTCE
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhc-C--CeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCC-----CCCCcc
Confidence            46789999999999999999986 3  79999999999999888653        36788887653111     124789


Q ss_pred             eEEEEcCCc---cchHHHHHHHHhccCCCeEEEEec
Q 026461          149 DYAFVDADK---DNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       149 D~V~~d~~~---~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      |+|++....   .+...+++.+.+.|+|||.+++..
T Consensus        95 D~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~  130 (230)
T 3cc8_A           95 DCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASI  130 (230)
T ss_dssp             EEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEE
T ss_pred             CEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEe
Confidence            999987543   345778899999999999999864

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.19  E-value=2.4e-11  Score=99.70  Aligned_cols=91  Identities=18%  Similarity=0.184  Sum_probs=73.3

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-------hhHHHHHHHHHHcCCCCcEEEEecch
Q 026461           59 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR-------ETYEIGLPIIKKAGVDHKINFIESEA  131 (238)
Q Consensus        59 ~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~-------~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (238)
                      ..++...+...++.+|||+|||+|..++.++..   .++|+++|+++       ++++.|++++..+++.++++++++|+
T Consensus        72 ~~~l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~  148 (258)
T 2r6z_A           72 GELIAKAVNHTAHPTVWDATAGLGRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNA  148 (258)
T ss_dssp             -CHHHHHTTGGGCCCEEETTCTTCHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCH
T ss_pred             hHHHHHHhCcCCcCeEEEeeCccCHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCH
Confidence            344444445555679999999999999999985   46899999999       99999999988877767799999999


Q ss_pred             hHHHHHHHhcccCCCCeeEEEEcC
Q 026461          132 LSVLDQLLKYSENEGSFDYAFVDA  155 (238)
Q Consensus       132 ~~~l~~~~~~~~~~~~fD~V~~d~  155 (238)
                      .+.++.+...   .++||+|++|.
T Consensus       149 ~~~l~~~~~~---~~~fD~V~~dP  169 (258)
T 2r6z_A          149 AEQMPALVKT---QGKPDIVYLDP  169 (258)
T ss_dssp             HHHHHHHHHH---HCCCSEEEECC
T ss_pred             HHHHHhhhcc---CCCccEEEECC
Confidence            9987765311   16899999986

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.16  E-value=1.6e-10  Score=91.60  Aligned_cols=97  Identities=13%  Similarity=0.093  Sum_probs=74.5

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHH
Q 026461           58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ  137 (238)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~  137 (238)
                      ...++..+....++.+|||||||+|..+..++      .+|+++|+++.                ++++..+|+.+. + 
T Consensus        55 ~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~----------------~~~~~~~d~~~~-~-  110 (215)
T 2zfu_A           55 VDRIARDLRQRPASLVVADFGCGDCRLASSIR------NPVHCFDLASL----------------DPRVTVCDMAQV-P-  110 (215)
T ss_dssp             HHHHHHHHHTSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS----------------STTEEESCTTSC-S-
T ss_pred             HHHHHHHHhccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC----------------CceEEEeccccC-C-
Confidence            44566666555567899999999999988773      58999999988                367788887663 1 


Q ss_pred             HHhcccCCCCeeEEEEcCC--ccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          138 LLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       138 ~~~~~~~~~~fD~V~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                           ...++||+|++...  ......+++.+.++|+|||.+++.+..
T Consensus       111 -----~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~~~  153 (215)
T 2zfu_A          111 -----LEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVS  153 (215)
T ss_dssp             -----CCTTCEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred             -----CCCCCEeEEEEehhccccCHHHHHHHHHHhCCCCeEEEEEEcC
Confidence                 12578999998753  345678899999999999999987643

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.15  E-value=1.5e-10  Score=99.73  Aligned_cols=97  Identities=9%  Similarity=0.094  Sum_probs=77.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      +..+|||||||+|..+..+++.+| ..+++++|+ +.+++.+++.       .+++++.+|..+.   +      +.. |
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~------p~~-D  263 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYP-SINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFDG---V------PKG-D  263 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTC---C------CCC-S
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCC-CCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCCC---C------CCC-C
Confidence            457999999999999999999987 789999999 8887766532       5799999998752   1      123 9


Q ss_pred             EEEEcCCccc-----hHHHHHHHHhccCCCeEEEEeccccC
Q 026461          150 YAFVDADKDN-----YCNYHERLMKLLKVGGIAVYDNTLWG  185 (238)
Q Consensus       150 ~V~~d~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~~  185 (238)
                      +|++....++     ...+++++.+.|+|||.+++.+...+
T Consensus       264 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  304 (368)
T 3reo_A          264 AIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILP  304 (368)
T ss_dssp             EEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCC
T ss_pred             EEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence            9998754432     34678999999999999988777654

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.15  E-value=1.7e-10  Score=96.53  Aligned_cols=95  Identities=16%  Similarity=0.139  Sum_probs=74.2

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHH
Q 026461           58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ  137 (238)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~  137 (238)
                      ..+++..+ ...++.+|||+|||+|..+..+++.++ .++|+++|+++.+++.|++++...+  ++++++++|..++...
T Consensus        15 l~e~l~~L-~~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~   90 (301)
T 1m6y_A           15 VREVIEFL-KPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFL   90 (301)
T ss_dssp             HHHHHHHH-CCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHH
T ss_pred             HHHHHHhc-CCCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHH
Confidence            34444433 345678999999999999999999987 7899999999999999999998877  5799999998775333


Q ss_pred             HHhcccCCCCeeEEEEcCCcc
Q 026461          138 LLKYSENEGSFDYAFVDADKD  158 (238)
Q Consensus       138 ~~~~~~~~~~fD~V~~d~~~~  158 (238)
                      +...  ...+||.|++|.+.+
T Consensus        91 l~~~--g~~~~D~Vl~D~gvS  109 (301)
T 1m6y_A           91 LKTL--GIEKVDGILMDLGVS  109 (301)
T ss_dssp             HHHT--TCSCEEEEEEECSCC
T ss_pred             HHhc--CCCCCCEEEEcCccc
Confidence            3210  125899999997643

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.14  E-value=5.4e-11  Score=103.92  Aligned_cols=110  Identities=17%  Similarity=0.226  Sum_probs=83.1

Q ss_pred             ccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461           52 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA  131 (238)
Q Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (238)
                      ....+...+.+..++...++.+|||+|||+|..+..+++.+....+++|+|+++.+++.|          .+++++++|+
T Consensus        21 ~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~   90 (421)
T 2ih2_A           21 VETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADF   90 (421)
T ss_dssp             CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCG
T ss_pred             EeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCCh
Confidence            334566666666665544567999999999999999998763368999999999998766          3689999998


Q ss_pred             hHHHHHHHhcccCCCCeeEEEEcCCc--------------c------------------chHHHHHHHHhccCCCeEEEE
Q 026461          132 LSVLDQLLKYSENEGSFDYAFVDADK--------------D------------------NYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       132 ~~~l~~~~~~~~~~~~fD~V~~d~~~--------------~------------------~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      .+..+        .++||+|+.+.+.              .                  .+..+++.+.++|+|||.+++
T Consensus        91 ~~~~~--------~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~  162 (421)
T 2ih2_A           91 LLWEP--------GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF  162 (421)
T ss_dssp             GGCCC--------SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhcCc--------cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEE
Confidence            76521        4689999997421              0                  012567888899999998766

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.14  E-value=1.4e-10  Score=105.42  Aligned_cols=101  Identities=21%  Similarity=0.211  Sum_probs=77.5

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++.+|||||||.|..+..||+.   +++|+|||+++.+++.|+.+....|.. +++|.++++.++....     ..++
T Consensus        64 ~~~~~~vLDvGCG~G~~~~~la~~---ga~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~~~~~~~~~~-----~~~~  134 (569)
T 4azs_A           64 LGRPLNVLDLGCAQGFFSLSLASK---GATIVGIDFQQENINVCRALAEENPDF-AAEFRVGRIEEVIAAL-----EEGE  134 (569)
T ss_dssp             HTSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTSTTS-EEEEEECCHHHHHHHC-----CTTS
T ss_pred             cCCCCeEEEECCCCcHHHHHHHhC---CCEEEEECCCHHHHHHHHHHHHhcCCC-ceEEEECCHHHHhhhc-----cCCC
Confidence            346789999999999999999985   679999999999999999999887743 5999999998876553     2578


Q ss_pred             eeEEEEcCCccchHH-----HHHHHHhccCCCeEE
Q 026461          148 FDYAFVDADKDNYCN-----YHERLMKLLKVGGIA  177 (238)
Q Consensus       148 fD~V~~d~~~~~~~~-----~~~~~~~~L~~gG~l  177 (238)
                      ||+|++-...++..+     ....+...|+++|..
T Consensus       135 fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~  169 (569)
T 4azs_A          135 FDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQA  169 (569)
T ss_dssp             CSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSE
T ss_pred             ccEEEECcchhcCCCHHHHHHHHHHHHHhccccce
Confidence            999998765444321     123344556666543

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.12  E-value=5.9e-10  Score=93.01  Aligned_cols=102  Identities=16%  Similarity=0.091  Sum_probs=77.3

Q ss_pred             cCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           53 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      .+++.....+...+...+..+|||||||+|..|..+++.   ..+|+++|+++.+++.+++++...   ++++++++|+.
T Consensus        33 L~d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~~li~~a~~~~~~~---~~v~vi~gD~l  106 (295)
T 3gru_A           33 LIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDKSLEPYANKLKELY---NNIEIIWGDAL  106 (295)
T ss_dssp             ECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCGGGHHHHHHHHHHC---SSEEEEESCTT
T ss_pred             cCCHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhccC---CCeEEEECchh
Confidence            455666555555566667789999999999999999986   469999999999999999998732   46999999998


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHH
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL  167 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~  167 (238)
                      +..  +     ...+||.|+.+.+.....+.+..+
T Consensus       107 ~~~--~-----~~~~fD~Iv~NlPy~is~pil~~l  134 (295)
T 3gru_A          107 KVD--L-----NKLDFNKVVANLPYQISSPITFKL  134 (295)
T ss_dssp             TSC--G-----GGSCCSEEEEECCGGGHHHHHHHH
T ss_pred             hCC--c-----ccCCccEEEEeCcccccHHHHHHH
Confidence            751  1     135799999886544444443333

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.12  E-value=8.8e-11  Score=101.02  Aligned_cols=98  Identities=9%  Similarity=0.061  Sum_probs=78.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .+..+|||||||+|..+..+++.+| ..+++++|+ +.+++.+++       .++++++.+|+.+.   +      +.. 
T Consensus       200 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~---~------p~~-  260 (364)
T 3p9c_A          200 EGLGTLVDVGGGVGATVAAIAAHYP-TIKGVNFDL-PHVISEAPQ-------FPGVTHVGGDMFKE---V------PSG-  260 (364)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC-------CTTEEEEECCTTTC---C------CCC-
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHCC-CCeEEEecC-HHHHHhhhh-------cCCeEEEeCCcCCC---C------CCC-
Confidence            3467999999999999999999987 789999999 888776653       25799999998762   1      123 


Q ss_pred             eEEEEcCCccc-----hHHHHHHHHhccCCCeEEEEeccccC
Q 026461          149 DYAFVDADKDN-----YCNYHERLMKLLKVGGIAVYDNTLWG  185 (238)
Q Consensus       149 D~V~~d~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~~  185 (238)
                      |+|++....++     ...+++++.+.|+|||.+++.+...+
T Consensus       261 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~  302 (364)
T 3p9c_A          261 DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILP  302 (364)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred             CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence            99998754433     35678999999999999988777653

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.11  E-value=8.2e-11  Score=101.42  Aligned_cols=97  Identities=15%  Similarity=0.174  Sum_probs=78.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .++.+|||||||+|..+..+++..+ ..+++++|+ +.+++.+++.       .+++++.+|+.+.   +       ..|
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~-------~~~  268 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYP-LIKGINFDL-PQVIENAPPL-------SGIEHVGGDMFAS---V-------PQG  268 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTC---C-------CCE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCC-CCeEEEeCh-HHHHHhhhhc-------CCCEEEeCCcccC---C-------CCC
Confidence            3467999999999999999999987 789999999 8888877641       4599999998652   2       239


Q ss_pred             eEEEEcCCccch-----HHHHHHHHhccCCCeEEEEecccc
Q 026461          149 DYAFVDADKDNY-----CNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       149 D~V~~d~~~~~~-----~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      |+|++....+++     ..+++.+.+.|+|||.+++.+...
T Consensus       269 D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~  309 (372)
T 1fp1_D          269 DAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFIL  309 (372)
T ss_dssp             EEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence            999987643332     378899999999999999877654

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.10  E-value=2.8e-10  Score=98.78  Aligned_cols=118  Identities=12%  Similarity=0.048  Sum_probs=83.9

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC-------------------------------------CC
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-------------------------------------DG   96 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~-------------------------------------~~   96 (238)
                      +....+..+-.+....+...|||.+||+|..++..+.....                                     ..
T Consensus       185 l~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~  264 (393)
T 3k0b_A          185 IKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPL  264 (393)
T ss_dssp             CCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred             CcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCc
Confidence            34444444444444456678999999999999887764321                                     15


Q ss_pred             EEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCc-------cchHHHHHHHHh
Q 026461           97 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-------DNYCNYHERLMK  169 (238)
Q Consensus        97 ~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~-------~~~~~~~~~~~~  169 (238)
                      +|+|+|+++.+++.|++|+..+|+.+++++.++|+.+...        ..+||+|+++.+-       .....++..+.+
T Consensus       265 ~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~--------~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~  336 (393)
T 3k0b_A          265 NIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT--------EDEYGVVVANPPYGERLEDEEAVRQLYREMGI  336 (393)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC--------CCCSCEEEECCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC--------CCCCCEEEECCCCccccCCchhHHHHHHHHHH
Confidence            6999999999999999999999998889999999987622        4689999999653       223334444444


Q ss_pred             ccCC--CeEEEE
Q 026461          170 LLKV--GGIAVY  179 (238)
Q Consensus       170 ~L~~--gG~lv~  179 (238)
                      .|++  ||.+.+
T Consensus       337 ~lk~~~g~~~~i  348 (393)
T 3k0b_A          337 VYKRMPTWSVYV  348 (393)
T ss_dssp             HHHTCTTCEEEE
T ss_pred             HHhcCCCCEEEE
Confidence            4443  664443

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.10  E-value=4.2e-10  Score=99.29  Aligned_cols=122  Identities=16%  Similarity=0.104  Sum_probs=93.3

Q ss_pred             CCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCC------------CCCEEEEEeCCchhHHHHHHHHHH
Q 026461           50 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP------------EDGQITAIDVNRETYEIGLPIIKK  117 (238)
Q Consensus        50 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~------------~~~~v~~iD~~~~~~~~a~~~~~~  117 (238)
                      +....++...+++..++......+|||.|||+|..++.+++.+.            ...+++|+|+++.+++.|+.++..
T Consensus       151 G~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l  230 (445)
T 2okc_A          151 GQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL  230 (445)
T ss_dssp             GGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH
T ss_pred             CcccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHH
Confidence            34445667777777777666667999999999999999887641            136799999999999999999988


Q ss_pred             cCCCC-cEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccc--------------------hHHHHHHHHhccCCCeE
Q 026461          118 AGVDH-KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--------------------YCNYHERLMKLLKVGGI  176 (238)
Q Consensus       118 ~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~--------------------~~~~~~~~~~~L~~gG~  176 (238)
                      .|+.. ++++.++|+.....        .++||+|+.+.+...                    ...+++.+.++|+|||.
T Consensus       231 ~g~~~~~~~i~~gD~l~~~~--------~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~  302 (445)
T 2okc_A          231 HGIGTDRSPIVCEDSLEKEP--------STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGR  302 (445)
T ss_dssp             TTCCSSCCSEEECCTTTSCC--------SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEE
T ss_pred             hCCCcCCCCEeeCCCCCCcc--------cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCE
Confidence            88753 57889999876411        358999999853211                    13678888999999997


Q ss_pred             EEE
Q 026461          177 AVY  179 (238)
Q Consensus       177 lv~  179 (238)
                      +++
T Consensus       303 ~a~  305 (445)
T 2okc_A          303 AAV  305 (445)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            755

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.09  E-value=2.2e-10  Score=99.41  Aligned_cols=76  Identities=18%  Similarity=0.136  Sum_probs=66.9

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc--CCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      +.+|||+|||+|..++.++..   ..+|+++|+++.+++.|++|+...  |+ ++++++++|+.+.++...     .++|
T Consensus        94 g~~VLDLgcG~G~~al~LA~~---g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~-----~~~f  164 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSK---ASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIK-----TFHP  164 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHH-----HHCC
T ss_pred             CCEEEEeCCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhcc-----CCCc
Confidence            689999999999999999975   469999999999999999999988  77 679999999998766531     2589


Q ss_pred             eEEEEcC
Q 026461          149 DYAFVDA  155 (238)
Q Consensus       149 D~V~~d~  155 (238)
                      |+||+|.
T Consensus       165 DvV~lDP  171 (410)
T 3ll7_A          165 DYIYVDP  171 (410)
T ss_dssp             SEEEECC
T ss_pred             eEEEECC
Confidence            9999984

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.07  E-value=2.1e-10  Score=98.07  Aligned_cols=99  Identities=10%  Similarity=0.120  Sum_probs=78.9

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..+..+|||||||+|..+..+++.+| ..+++++|+ +.+++.+++.       .+++++.+|+.+.   +       ..
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~-------p~  246 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFP-KLKCIVFDR-PQVVENLSGS-------NNLTYVGGDMFTS---I-------PN  246 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCCB-------TTEEEEECCTTTC---C-------CC
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCC-CCeEEEeeC-HHHHhhcccC-------CCcEEEeccccCC---C-------CC
Confidence            34568999999999999999999987 789999999 9988877641       3499999998652   1       34


Q ss_pred             eeEEEEcCCccch-----HHHHHHHHhccCC---CeEEEEeccccC
Q 026461          148 FDYAFVDADKDNY-----CNYHERLMKLLKV---GGIAVYDNTLWG  185 (238)
Q Consensus       148 fD~V~~d~~~~~~-----~~~~~~~~~~L~~---gG~lv~~~~~~~  185 (238)
                      ||+|++....+++     ..+++.+.+.|+|   ||.+++.+...+
T Consensus       247 ~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~  292 (352)
T 1fp2_A          247 ADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVID  292 (352)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEEC
T ss_pred             ccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecC
Confidence            9999987543322     3788999999999   999988776643

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.06  E-value=7.9e-10  Score=95.60  Aligned_cols=116  Identities=8%  Similarity=0.015  Sum_probs=84.4

Q ss_pred             cHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC-------------------------------------CCE
Q 026461           55 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-------------------------------------DGQ   97 (238)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~-------------------------------------~~~   97 (238)
                      ....+..+-.+....+...+||.+||+|..++..+.....                                     ..+
T Consensus       179 ~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  258 (384)
T 3ldg_A          179 KENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLD  258 (384)
T ss_dssp             CHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred             cHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCce
Confidence            3344444444444456678999999999999887754321                                     156


Q ss_pred             EEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCc-------cchHHHHHHHHhc
Q 026461           98 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-------DNYCNYHERLMKL  170 (238)
Q Consensus        98 v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~-------~~~~~~~~~~~~~  170 (238)
                      |+|+|+++.+++.|++|+..+|+.+++++.++|+.+...        ..+||+|++|.+-       .....++..+.+.
T Consensus       259 v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~--------~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~  330 (384)
T 3ldg_A          259 ISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKT--------NKINGVLISNPPYGERLLDDKAVDILYNEMGET  330 (384)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCC--------CCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCc--------cCCcCEEEECCchhhccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999998889999999987621        3689999999652       2234555555555


Q ss_pred             cCC--CeEEE
Q 026461          171 LKV--GGIAV  178 (238)
Q Consensus       171 L~~--gG~lv  178 (238)
                      |++  ||.+.
T Consensus       331 lk~~~g~~~~  340 (384)
T 3ldg_A          331 FAPLKTWSQF  340 (384)
T ss_dssp             HTTCTTSEEE
T ss_pred             HhhCCCcEEE
Confidence            554  66443

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.06  E-value=3.7e-10  Score=97.77  Aligned_cols=113  Identities=16%  Similarity=0.122  Sum_probs=81.2

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCC-------------------------------------CCCEEEE
Q 026461           58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP-------------------------------------EDGQITA  100 (238)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~-------------------------------------~~~~v~~  100 (238)
                      .+..+-.+....+...|||.|||+|..++.++....                                     ...+|+|
T Consensus       183 lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G  262 (385)
T 3ldu_A          183 LAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG  262 (385)
T ss_dssp             HHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred             HHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence            333333333344567899999999999998876532                                     1257999


Q ss_pred             EeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCcc-------chHHHHHHHHhccCC
Q 026461          101 IDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-------NYCNYHERLMKLLKV  173 (238)
Q Consensus       101 iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~-------~~~~~~~~~~~~L~~  173 (238)
                      +|+++.+++.|++|+..+|+.+++++.++|+.+...        ..+||+|+++.+..       ....++..+.+.|++
T Consensus       263 vDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~--------~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~  334 (385)
T 3ldu_A          263 YDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS--------EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRK  334 (385)
T ss_dssp             EESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC--------SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred             EECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc--------CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999999998789999999987622        46899999997532       223444444444444


Q ss_pred             --CeEEE
Q 026461          174 --GGIAV  178 (238)
Q Consensus       174 --gG~lv  178 (238)
                        |+.+.
T Consensus       335 ~~g~~~~  341 (385)
T 3ldu_A          335 LKNWSYY  341 (385)
T ss_dssp             SBSCEEE
T ss_pred             CCCCEEE
Confidence              55433

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.05  E-value=1.1e-09  Score=89.64  Aligned_cols=94  Identities=10%  Similarity=0.089  Sum_probs=71.6

Q ss_pred             cCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           53 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      ..++.....+...+...+..+|||||||+|..|..+++.   ..+|+++|+++++++.+++++..   .++++++++|+.
T Consensus        12 L~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~~   85 (255)
T 3tqs_A           12 LHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE---CDNLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDAL   85 (255)
T ss_dssp             ECCHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT---SSEEEEEECCHHHHHHHHHHHTT---CTTEEEEESCTT
T ss_pred             ccCHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcchH
Confidence            345666666666666677889999999999999999985   36999999999999999998864   357999999998


Q ss_pred             HH-HHHHHhcccCCCCeeEEEEcCCc
Q 026461          133 SV-LDQLLKYSENEGSFDYAFVDADK  157 (238)
Q Consensus       133 ~~-l~~~~~~~~~~~~fD~V~~d~~~  157 (238)
                      +. ++.+    ...++|| |+.+.+.
T Consensus        86 ~~~~~~~----~~~~~~~-vv~NlPY  106 (255)
T 3tqs_A           86 QFDFSSV----KTDKPLR-VVGNLPY  106 (255)
T ss_dssp             TCCGGGS----CCSSCEE-EEEECCH
T ss_pred             hCCHHHh----ccCCCeE-EEecCCc
Confidence            86 2322    1135788 6666543

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.98  E-value=3.1e-10  Score=92.87  Aligned_cols=86  Identities=9%  Similarity=0.146  Sum_probs=67.5

Q ss_pred             HHHHHhhcCC--CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC--------CCCcEEEEecch
Q 026461           62 MAMLLRLVNA--KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--------VDHKINFIESEA  131 (238)
Q Consensus        62 l~~l~~~~~~--~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--------~~~~v~~~~~d~  131 (238)
                      +...+...++  .+|||+|||+|..+++++..   +++|+++|+++..++.++++++...        +..+++++++|+
T Consensus        78 l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~---g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~  154 (258)
T 2oyr_A           78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (258)
T ss_dssp             HHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred             HHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence            3334444555  79999999999999999986   4589999999998888887776432        324799999999


Q ss_pred             hHHHHHHHhcccCCCCeeEEEEcCC
Q 026461          132 LSVLDQLLKYSENEGSFDYAFVDAD  156 (238)
Q Consensus       132 ~~~l~~~~~~~~~~~~fD~V~~d~~  156 (238)
                      .++++.+      ..+||+||+|..
T Consensus       155 ~~~L~~~------~~~fDvV~lDP~  173 (258)
T 2oyr_A          155 LTALTDI------TPRPQVVYLDPM  173 (258)
T ss_dssp             HHHSTTC------SSCCSEEEECCC
T ss_pred             HHHHHhC------cccCCEEEEcCC
Confidence            9887654      347999999964

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.96  E-value=2.5e-09  Score=96.47  Aligned_cols=124  Identities=10%  Similarity=-0.012  Sum_probs=92.8

Q ss_pred             CCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC-----------------CCEEEEEeCCchhHHHHH
Q 026461           50 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-----------------DGQITAIDVNRETYEIGL  112 (238)
Q Consensus        50 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~-----------------~~~v~~iD~~~~~~~~a~  112 (238)
                      +..-..+....++..++...+..+|+|.|||+|...+.+++.+..                 ..+++|+|+++.+++.|+
T Consensus       149 G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~  228 (541)
T 2ar0_A          149 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL  228 (541)
T ss_dssp             -CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred             CeeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHH
Confidence            334455667777777776656679999999999999888876421                 137999999999999999


Q ss_pred             HHHHHcCCCC----cEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccc-----------------hHHHHHHHHhcc
Q 026461          113 PIIKKAGVDH----KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-----------------YCNYHERLMKLL  171 (238)
Q Consensus       113 ~~~~~~~~~~----~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~-----------------~~~~~~~~~~~L  171 (238)
                      .++...+...    ++++.++|+.......      .++||+|+.+.+...                 ...++..+.++|
T Consensus       229 ~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~------~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~L  302 (541)
T 2ar0_A          229 MNCLLHDIEGNLDHGGAIRLGNTLGSDGEN------LPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETL  302 (541)
T ss_dssp             HHHHTTTCCCBGGGTBSEEESCTTSHHHHT------SCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHE
T ss_pred             HHHHHhCCCccccccCCeEeCCCccccccc------ccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHh
Confidence            9998888754    2788999987653221      478999999864211                 235788889999


Q ss_pred             CCCeEEEE
Q 026461          172 KVGGIAVY  179 (238)
Q Consensus       172 ~~gG~lv~  179 (238)
                      +|||.+++
T Consensus       303 k~gGr~a~  310 (541)
T 2ar0_A          303 HPGGRAAV  310 (541)
T ss_dssp             EEEEEEEE
T ss_pred             CCCCEEEE
Confidence            99997655

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.96  E-value=1.1e-10  Score=96.66  Aligned_cols=98  Identities=7%  Similarity=-0.015  Sum_probs=68.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHH-HHHcCCCCcEEEE--ecchhHHHHHHHhcccCCC
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI-IKKAGVDHKINFI--ESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~-~~~~~~~~~v~~~--~~d~~~~l~~~~~~~~~~~  146 (238)
                      +..+|||+|||+|.++..+++.    ++|+++|+++ ++..+++. ........++.++  ++|+.++ +        .+
T Consensus        82 ~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l-~--------~~  147 (276)
T 2wa2_A           82 LKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKM-E--------PF  147 (276)
T ss_dssp             CCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGC-C--------CC
T ss_pred             CCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhC-C--------CC
Confidence            4569999999999999999985    5899999998 43322211 0000111268899  8998764 1        47


Q ss_pred             CeeEEEEcCCc--cc-----h--HHHHHHHHhccCCCe--EEEEec
Q 026461          147 SFDYAFVDADK--DN-----Y--CNYHERLMKLLKVGG--IAVYDN  181 (238)
Q Consensus       147 ~fD~V~~d~~~--~~-----~--~~~~~~~~~~L~~gG--~lv~~~  181 (238)
                      +||+|++|...  ..     .  ...++.+.+.|+|||  .+++..
T Consensus       148 ~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~  193 (276)
T 2wa2_A          148 QADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV  193 (276)
T ss_dssp             CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred             CcCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence            99999998541  01     0  135777889999999  888853

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.96  E-value=1.1e-10  Score=96.21  Aligned_cols=99  Identities=11%  Similarity=0.005  Sum_probs=68.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHH-HHHcCCCCcEEEE--ecchhHHHHHHHhcccCC
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI-IKKAGVDHKINFI--ESEALSVLDQLLKYSENE  145 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~-~~~~~~~~~v~~~--~~d~~~~l~~~~~~~~~~  145 (238)
                      .+..+|||+|||+|.++..+++.    ++|+++|+++ ++..+++. ........++.++  ++|+.++ +        .
T Consensus        73 ~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l-~--------~  138 (265)
T 2oxt_A           73 ELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTL-P--------V  138 (265)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTS-C--------C
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHC-C--------C
Confidence            35669999999999999999975    6899999998 32222111 0000011158888  8998764 1        4


Q ss_pred             CCeeEEEEcCCc--cch-------HHHHHHHHhccCCCe--EEEEec
Q 026461          146 GSFDYAFVDADK--DNY-------CNYHERLMKLLKVGG--IAVYDN  181 (238)
Q Consensus       146 ~~fD~V~~d~~~--~~~-------~~~~~~~~~~L~~gG--~lv~~~  181 (238)
                      ++||+|++|...  ...       ...++.+.+.|+|||  .+++..
T Consensus       139 ~~fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv  185 (265)
T 2oxt_A          139 ERTDVIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKV  185 (265)
T ss_dssp             CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CCCcEEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence            799999998541  111       126777889999999  888854

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.96  E-value=3.3e-09  Score=86.22  Aligned_cols=75  Identities=16%  Similarity=0.174  Sum_probs=59.3

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      .++.....+...+...++.+|||||||+|..|..+++..   .+|+++|+++.+++.+++++..   .++++++++|+.+
T Consensus        14 ~d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~---~~~v~~~~~D~~~   87 (244)
T 1qam_A           14 TSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVD---HDNFQVLNKDILQ   87 (244)
T ss_dssp             CCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTT---CCSEEEECCCGGG
T ss_pred             CCHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhcc---CCCeEEEEChHHh
Confidence            344444444444444567899999999999999999874   6999999999999999998753   2479999999977


Q ss_pred             H
Q 026461          134 V  134 (238)
Q Consensus       134 ~  134 (238)
                      .
T Consensus        88 ~   88 (244)
T 1qam_A           88 F   88 (244)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.95  E-value=1.4e-09  Score=93.19  Aligned_cols=97  Identities=12%  Similarity=0.076  Sum_probs=77.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .+..+|||||||+|..+..+++.+| ..+++++|+ +.+++.+++      . .+++++.+|..+  + +       .+|
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~--~-~-------~~~  252 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIFP-HLKCTVFDQ-PQVVGNLTG------N-ENLNFVGGDMFK--S-I-------PSA  252 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHCT-TSEEEEEEC-HHHHSSCCC------C-SSEEEEECCTTT--C-C-------CCC
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEecc-HHHHhhccc------C-CCcEEEeCccCC--C-C-------CCc
Confidence            4668999999999999999999987 789999999 788776654      2 359999999865  2 1       359


Q ss_pred             eEEEEcCCccc-----hHHHHHHHHhccCC---CeEEEEecccc
Q 026461          149 DYAFVDADKDN-----YCNYHERLMKLLKV---GGIAVYDNTLW  184 (238)
Q Consensus       149 D~V~~d~~~~~-----~~~~~~~~~~~L~~---gG~lv~~~~~~  184 (238)
                      |+|++....++     ...+++.+.+.|+|   ||.+++.+...
T Consensus       253 D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~  296 (358)
T 1zg3_A          253 DAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISI  296 (358)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEE
T ss_pred             eEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEecc
Confidence            99998754332     23788999999999   99888876654

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.95  E-value=3.7e-09  Score=87.18  Aligned_cols=112  Identities=11%  Similarity=-0.018  Sum_probs=79.4

Q ss_pred             cCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           53 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      ..++....-+...+...+. +|||||||+|..|..+++.   ..+|+++|+++++++.+++++.    ..+++++++|+.
T Consensus        30 L~d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~---~~~V~avEid~~~~~~l~~~~~----~~~v~vi~~D~l  101 (271)
T 3fut_A           30 LVSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA---GAEVTAIEKDLRLRPVLEETLS----GLPVRLVFQDAL  101 (271)
T ss_dssp             ECCHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT---TCCEEEEESCGGGHHHHHHHTT----TSSEEEEESCGG
T ss_pred             cCCHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcC----CCCEEEEECChh
Confidence            3456565555555666666 9999999999999999986   3689999999999999999875    257999999998


Q ss_pred             HHH-HHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhcc-CCCeEEEE
Q 026461          133 SVL-DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL-KVGGIAVY  179 (238)
Q Consensus       133 ~~l-~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L-~~gG~lv~  179 (238)
                      +.. +.       ...+|.|+.+.+..-....+..+...- -..+++++
T Consensus       102 ~~~~~~-------~~~~~~iv~NlPy~iss~il~~ll~~~~~~~~~lm~  143 (271)
T 3fut_A          102 LYPWEE-------VPQGSLLVANLPYHIATPLVTRLLKTGRFARLVFLV  143 (271)
T ss_dssp             GSCGGG-------SCTTEEEEEEECSSCCHHHHHHHHHHCCEEEEEEEE
T ss_pred             hCChhh-------ccCccEEEecCcccccHHHHHHHhcCCCCCEEEEEe
Confidence            762 21       236899998865444444444444331 12445555

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.94  E-value=6.7e-10  Score=93.23  Aligned_cols=95  Identities=9%  Similarity=0.012  Sum_probs=66.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC----CchhHHHHHHHHHHcCCCCcEEEEec-chhHHHHHHHhcccC
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV----NRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSEN  144 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~----~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~l~~~~~~~~~  144 (238)
                      +..+|||+|||+|.++..+++.    ++|+++|+    ++..++...  ....+ .+++.++++ |+.+. +        
T Consensus        82 ~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~~D~~~l-~--------  145 (305)
T 2p41_A           82 PEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPIP--MSTYG-WNLVRLQSGVDVFFI-P--------  145 (305)
T ss_dssp             CCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCCC--CCSTT-GGGEEEECSCCTTTS-C--------
T ss_pred             CCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHHH--hhhcC-CCCeEEEeccccccC-C--------
Confidence            4579999999999999999985    58999999    443322110  01111 146999998 87654 1        


Q ss_pred             CCCeeEEEEcCCcc--ch----H---HHHHHHHhccCCCeEEEEe
Q 026461          145 EGSFDYAFVDADKD--NY----C---NYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       145 ~~~fD~V~~d~~~~--~~----~---~~~~~~~~~L~~gG~lv~~  180 (238)
                      .++||+|++|....  ..    .   ..+..+.+.|+|||.+++.
T Consensus       146 ~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k  190 (305)
T 2p41_A          146 PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK  190 (305)
T ss_dssp             CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            36899999986432  11    1   3567777999999999984

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.93  E-value=2.9e-09  Score=88.59  Aligned_cols=90  Identities=14%  Similarity=0.167  Sum_probs=67.7

Q ss_pred             hcCCCEEEEEcccc------cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEE-EecchhHHHHHHHh
Q 026461           68 LVNAKKTIEIGVFT------GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF-IESEALSVLDQLLK  140 (238)
Q Consensus        68 ~~~~~~vLeiG~G~------G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~-~~~d~~~~l~~~~~  140 (238)
                      ..+..+|||+|||+      |.  ..+++.+++.++|+++|+++.             + .++++ +++|+.+..  +  
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v-~~v~~~i~gD~~~~~--~--  120 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------V-SDADSTLIGDCATVH--T--  120 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------B-CSSSEEEESCGGGCC--C--
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------C-CCCEEEEECccccCC--c--
Confidence            44567999999955      55  556666765789999999998             1 25888 999987641  1  


Q ss_pred             cccCCCCeeEEEEcCCcc--------------chHHHHHHHHhccCCCeEEEEec
Q 026461          141 YSENEGSFDYAFVDADKD--------------NYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       141 ~~~~~~~fD~V~~d~~~~--------------~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                          .++||+|+++....              .+...++.+.+.|+|||.+++..
T Consensus       121 ----~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~  171 (290)
T 2xyq_A          121 ----ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI  171 (290)
T ss_dssp             ----SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ----cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence                36899999974321              13467888899999999999864

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.85  E-value=1.5e-08  Score=83.92  Aligned_cols=77  Identities=12%  Similarity=0.103  Sum_probs=62.0

Q ss_pred             cCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461           53 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA  131 (238)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (238)
                      ..++....-+...+...+..+|||||||+|..|..+++..+. .++|+++|+++.+++.++++.     ..+++++++|+
T Consensus        25 L~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~   99 (279)
T 3uzu_A           25 LVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDA   99 (279)
T ss_dssp             ECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCG
T ss_pred             cCCHHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECCh
Confidence            355556555555666667789999999999999999987652 255999999999999999883     35799999999


Q ss_pred             hHH
Q 026461          132 LSV  134 (238)
Q Consensus       132 ~~~  134 (238)
                      .+.
T Consensus       100 ~~~  102 (279)
T 3uzu_A          100 LTF  102 (279)
T ss_dssp             GGC
T ss_pred             hcC
Confidence            875

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.85  E-value=5.2e-09  Score=94.34  Aligned_cols=125  Identities=10%  Similarity=0.070  Sum_probs=92.4

Q ss_pred             CCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC--------------CCEEEEEeCCchhHHHHHH
Q 026461           48 PWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE--------------DGQITAIDVNRETYEIGLP  113 (238)
Q Consensus        48 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~--------------~~~v~~iD~~~~~~~~a~~  113 (238)
                      ..+..-.++....++..++.... .+|+|.+||+|...+.++..+..              ..+++|+|+++.++..|+.
T Consensus       223 ~~G~fyTP~~Vv~lmv~ll~p~~-~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~  301 (544)
T 3khk_A          223 QGGQYYTPKSIVTLIVEMLEPYK-GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAM  301 (544)
T ss_dssp             CSTTTCCCHHHHHHHHHHHCCCS-EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHH
T ss_pred             cCCeEeCCHHHHHHHHHHHhcCC-CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHH
Confidence            34555577888888888876533 49999999999998887654320              3589999999999999999


Q ss_pred             HHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccc-------------------------h-------H
Q 026461          114 IIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-------------------------Y-------C  161 (238)
Q Consensus       114 ~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~-------------------------~-------~  161 (238)
                      ++...|+..++.+.++|+.....      ....+||+|+.+.+-..                         .       .
T Consensus       302 Nl~l~gi~~~i~i~~gDtL~~~~------~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~  375 (544)
T 3khk_A          302 NMVIRGIDFNFGKKNADSFLDDQ------HPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANF  375 (544)
T ss_dssp             HHHHTTCCCBCCSSSCCTTTSCS------CTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHH
T ss_pred             HHHHhCCCcccceeccchhcCcc------cccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhH
Confidence            99999987666668888765311      12478999999753211                         0       1


Q ss_pred             HHHHHHHhccCCCeEEEE
Q 026461          162 NYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       162 ~~~~~~~~~L~~gG~lv~  179 (238)
                      .++..+.++|+|||.+++
T Consensus       376 ~Fl~~~l~~Lk~gGr~ai  393 (544)
T 3khk_A          376 AWMLHMLYHLAPTGSMAL  393 (544)
T ss_dssp             HHHHHHHHTEEEEEEEEE
T ss_pred             HHHHHHHHHhccCceEEE
Confidence            478888999999997544

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.83  E-value=9.6e-08  Score=85.99  Aligned_cols=126  Identities=13%  Similarity=0.087  Sum_probs=96.0

Q ss_pred             CCCccCcHhHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCchhHHHHHHHHHHcCCC-
Q 026461           49 WAMMGTAPDAGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIGLPIIKKAGVD-  121 (238)
Q Consensus        49 ~~~~~~~~~~~~~l~~l~~----~~~~~~vLeiG~G~G~~t~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~-  121 (238)
                      .+..-.++....++..++.    .....+|+|.+||+|...+.++..+.  ...+++|+|+++.++..|+.++...|+. 
T Consensus       196 ~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~  275 (542)
T 3lkd_A          196 AGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPI  275 (542)
T ss_dssp             CSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCG
T ss_pred             CCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCc
Confidence            4555567888888888887    34566999999999999999888763  2578999999999999999999988885 


Q ss_pred             CcEEEEecchhHH-HHHHHhcccCCCCeeEEEEcCCcc-----------c-----h----------HHHHHHHHhccC-C
Q 026461          122 HKINFIESEALSV-LDQLLKYSENEGSFDYAFVDADKD-----------N-----Y----------CNYHERLMKLLK-V  173 (238)
Q Consensus       122 ~~v~~~~~d~~~~-l~~~~~~~~~~~~fD~V~~d~~~~-----------~-----~----------~~~~~~~~~~L~-~  173 (238)
                      +++.+.++|.... ++..     ...+||+|+.+.+-.           .     +          ..++..+.++|+ +
T Consensus       276 ~~~~I~~gDtL~~d~p~~-----~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~  350 (542)
T 3lkd_A          276 ENQFLHNADTLDEDWPTQ-----EPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQD  350 (542)
T ss_dssp             GGEEEEESCTTTSCSCCS-----SCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTT
T ss_pred             CccceEecceeccccccc-----ccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCC
Confidence            4689999998754 1111     247899999874310           0     0          136788889999 9


Q ss_pred             CeEEEE
Q 026461          174 GGIAVY  179 (238)
Q Consensus       174 gG~lv~  179 (238)
                      ||.+++
T Consensus       351 gGr~a~  356 (542)
T 3lkd_A          351 NGVMAI  356 (542)
T ss_dssp             TCEEEE
T ss_pred             ceeEEE
Confidence            997644

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.83  E-value=1.5e-08  Score=82.53  Aligned_cols=113  Identities=16%  Similarity=0.117  Sum_probs=77.0

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      .++....-+...+...++.+|||||||+|..|..+++. + ..+|+++|+++.+++.++++    + ..+++++++|+.+
T Consensus        15 ~d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~-~~~v~avEid~~~~~~~~~~----~-~~~v~~i~~D~~~   87 (249)
T 3ftd_A           15 VSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH-P-LKKLYVIELDREMVENLKSI----G-DERLEVINEDASK   87 (249)
T ss_dssp             ECHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS-C-CSEEEEECCCHHHHHHHTTS----C-CTTEEEECSCTTT
T ss_pred             CCHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHhc----c-CCCeEEEEcchhh
Confidence            44555555555555567789999999999999999986 2 47999999999999999876    2 3579999999987


Q ss_pred             H-HHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhc--cCCCeEEEEe
Q 026461          134 V-LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL--LKVGGIAVYD  180 (238)
Q Consensus       134 ~-l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~--L~~gG~lv~~  180 (238)
                      . ++..      .+.+ .|+.+.+..-....+..+...  .-+.+++++.
T Consensus        88 ~~~~~~------~~~~-~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~Q  130 (249)
T 3ftd_A           88 FPFCSL------GKEL-KVVGNLPYNVASLIIENTVYNKDCVPLAVFMVQ  130 (249)
T ss_dssp             CCGGGS------CSSE-EEEEECCTTTHHHHHHHHHHTGGGCSEEEEEEE
T ss_pred             CChhHc------cCCc-EEEEECchhccHHHHHHHHhcCCCCceEEEEEe
Confidence            5 2221      1233 666665544444554444432  2345566654

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.82  E-value=1.4e-10  Score=94.23  Aligned_cols=113  Identities=15%  Similarity=0.151  Sum_probs=78.0

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      +++.....+...+...+..+|||||||+|..+..+++..   .+|+++|+++.+++.+++++.   ..++++++++|+.+
T Consensus        13 ~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~---~~~~v~~~~~D~~~   86 (245)
T 1yub_A           13 TSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQ   86 (245)
T ss_dssp             CCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTT
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhc---cCCceEEEECChhh
Confidence            344444444444455567799999999999999999873   699999999999999887764   23579999999977


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCccc--------------hHHHH----HHHHhccCCCeEEEE
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKDN--------------YCNYH----ERLMKLLKVGGIAVY  179 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~~--------------~~~~~----~~~~~~L~~gG~lv~  179 (238)
                      ..  +.    ..++| .|+.+.+...              ....+    +.+.++|+|||.+++
T Consensus        87 ~~--~~----~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v  143 (245)
T 1yub_A           87 FQ--FP----NKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGL  143 (245)
T ss_dssp             TT--CC----CSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHH
T ss_pred             cC--cc----cCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhh
Confidence            52  10    02578 6666643211              11122    556788999987655

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.81  E-value=7.5e-09  Score=94.27  Aligned_cols=101  Identities=11%  Similarity=0.069  Sum_probs=77.1

Q ss_pred             CCEEEEEcccccHHHHHHH---hhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           71 AKKTIEIGVFTGYSLLLTA---LTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la---~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ...|||+|||+|-.....+   +......+|++||-++ ++..+++....+++.++|+++++|++++  .+      +++
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev--~L------PEK  428 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREW--VA------PEK  428 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTC--CC------SSC
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceec--cC------Ccc
Confidence            3479999999999854443   3333234799999997 5677888999999999999999999887  33      589


Q ss_pred             eeEEEEcC-----CccchHHHHHHHHhccCCCeEEEEe
Q 026461          148 FDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       148 fD~V~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      +|+|+..-     ..+..+..+....+.|||||+++=+
T Consensus       429 VDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimiPs  466 (637)
T 4gqb_A          429 ADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSIPG  466 (637)
T ss_dssp             EEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEESC
T ss_pred             cCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEccc
Confidence            99998752     2344566676667899999997643

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.77  E-value=3.1e-08  Score=80.82  Aligned_cols=102  Identities=12%  Similarity=0.002  Sum_probs=68.5

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      +++.....+...+...+..+|||||||+|..|. ++. .+ ..+|+++|+++.+++.+++++...   ++++++++|+.+
T Consensus         5 ~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~-~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~   78 (252)
T 1qyr_A            5 NDQFVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-ER-LDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMT   78 (252)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-TT-CSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGG
T ss_pred             CCHHHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-CC-CCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhh
Confidence            344454444445555667789999999999999 654 22 234999999999999999876432   479999999988


Q ss_pred             H-HHHHHhcccCCCCeeEEEEcCCccchHHHH
Q 026461          134 V-LDQLLKYSENEGSFDYAFVDADKDNYCNYH  164 (238)
Q Consensus       134 ~-l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~  164 (238)
                      . ++...+.   .+..|.|+.+.+..-....+
T Consensus        79 ~~~~~~~~~---~~~~~~vvsNlPY~i~~~il  107 (252)
T 1qyr_A           79 FNFGELAEK---MGQPLRVFGNLPYNISTPLM  107 (252)
T ss_dssp             CCHHHHHHH---HTSCEEEEEECCTTTHHHHH
T ss_pred             CCHHHhhcc---cCCceEEEECCCCCccHHHH
Confidence            4 4433110   02456777776544333443

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.76  E-value=2.4e-08  Score=91.20  Aligned_cols=107  Identities=11%  Similarity=-0.028  Sum_probs=76.7

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC------------CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHH
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIP------------EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL  138 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~------------~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~  138 (238)
                      .+.|||+|||+|-.....+.+..            ...+|++||.++.++...+.... +++.++|+++++|++++-...
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~  488 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA  488 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence            45899999999999754332211            13599999999988766665554 788899999999999873211


Q ss_pred             HhcccCCCCeeEEEEcC-----CccchHHHHHHHHhccCCCeEEEEe
Q 026461          139 LKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       139 ~~~~~~~~~fD~V~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ..  ...++.|+|+...     ..+..++.+..+.+.|+|||+++=+
T Consensus       489 ~~--~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~iP~  533 (745)
T 3ua3_A          489 KD--RGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISIPQ  533 (745)
T ss_dssp             HH--TTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEESC
T ss_pred             cc--CCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEECC
Confidence            11  1257999999763     2234567777778899999987643

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.73  E-value=2.3e-08  Score=92.83  Aligned_cols=121  Identities=13%  Similarity=0.097  Sum_probs=84.1

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhC---C-------------------------------------
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI---P-------------------------------------   93 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~---~-------------------------------------   93 (238)
                      +....+..+-.+....+...+||.+||+|..++..+...   +                                     
T Consensus       174 l~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~  253 (703)
T 3v97_A          174 IKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLA  253 (703)
T ss_dssp             SCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccc
Confidence            334444444444444456789999999999998877642   1                                     


Q ss_pred             -CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCcc-------chHHHHH
Q 026461           94 -EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-------NYCNYHE  165 (238)
Q Consensus        94 -~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~-------~~~~~~~  165 (238)
                       ...+|+|+|+++.+++.|++|+..+|+.+.++|.++|+.+..+..     ..++||+|+++.+-.       ....+++
T Consensus       254 ~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~-----~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~  328 (703)
T 3v97_A          254 EYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPL-----PKGPYGTVLSNPPYGERLDSEPALIALHS  328 (703)
T ss_dssp             HCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSC-----TTCCCCEEEECCCCCC---CCHHHHHHHH
T ss_pred             cCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCcccc-----ccCCCCEEEeCCCccccccchhHHHHHHH
Confidence             125899999999999999999999999888999999998752110     123899999996521       2233444


Q ss_pred             HH---HhccCCCeEEEE
Q 026461          166 RL---MKLLKVGGIAVY  179 (238)
Q Consensus       166 ~~---~~~L~~gG~lv~  179 (238)
                      .+   ++.+.|||.+.+
T Consensus       329 ~l~~~lk~~~~g~~~~i  345 (703)
T 3v97_A          329 LLGRIMKNQFGGWNLSL  345 (703)
T ss_dssp             HHHHHHHHHCTTCEEEE
T ss_pred             HHHHHHHhhCCCCeEEE
Confidence            33   344557886544

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.66  E-value=5.5e-07  Score=83.52  Aligned_cols=159  Identities=9%  Similarity=0.031  Sum_probs=99.3

Q ss_pred             CCCCccCcHhHHHHHHHHHh--h----cCCCEEEEEcccccHHHHHHHhhCCC--CCEEEEEeCCchhHHHH--HHHHHH
Q 026461           48 PWAMMGTAPDAGQLMAMLLR--L----VNAKKTIEIGVFTGYSLLLTALTIPE--DGQITAIDVNRETYEIG--LPIIKK  117 (238)
Q Consensus        48 ~~~~~~~~~~~~~~l~~l~~--~----~~~~~vLeiG~G~G~~t~~la~~~~~--~~~v~~iD~~~~~~~~a--~~~~~~  117 (238)
                      ..+.....+..+.++..++.  .    ..+.+|||.|||+|...+.++..++.  ..+++|+|+++.+++.|  +.++..
T Consensus       293 k~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~l  372 (878)
T 3s1s_A          293 HEGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLF  372 (878)
T ss_dssp             CCBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTS
T ss_pred             cCceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence            34555677788888877732  1    23569999999999999999987641  35799999999999999  555543


Q ss_pred             cCCC---CcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccc--------------------------------hHH
Q 026461          118 AGVD---HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--------------------------------YCN  162 (238)
Q Consensus       118 ~~~~---~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~--------------------------------~~~  162 (238)
                      +++.   ....+...|.......      ..++||+|+.+.+-..                                +..
T Consensus       373 N~LlhGi~~~~I~~dD~L~~~~~------~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~a  446 (878)
T 3s1s_A          373 PQLVSSNNAPTITGEDVCSLNPE------DFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEAL  446 (878)
T ss_dssp             TTTCBTTBCCEEECCCGGGCCGG------GGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHH
T ss_pred             hhhhcCCCcceEEecchhccccc------ccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHH
Confidence            2221   1235555555442111      1478999999854210                                223


Q ss_pred             HHHHHHhccCCCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEE-eee
Q 026461          163 YHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLS-HVA  226 (238)
Q Consensus       163 ~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~lp  226 (238)
                      +++.+.++|++||.+++  ++..+.....            ......+.++|.++-.+..+ .+|
T Consensus       447 FIe~Al~lLKpGGrLAf--IlP~s~Lf~s------------g~~~kkLRk~LLe~~~I~aIIdLP  497 (878)
T 3s1s_A          447 FLELVTELVQDGTVISA--IMPKQYLTAQ------------GNESKAFREFLVGNFGLEHIFLYP  497 (878)
T ss_dssp             HHHHHHHHSCTTCEEEE--EEETHHHHCC------------SHHHHHHHHHHTTTTCEEEEEECC
T ss_pred             HHHHHHHhcCCCcEEEE--EEChHHhccC------------ChHHHHHHHHHHhCCCeEEEEECC
Confidence            56777889999997665  2222211110            01245666777777665543 344

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.65  E-value=1.5e-07  Score=77.26  Aligned_cols=91  Identities=8%  Similarity=0.064  Sum_probs=69.9

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHH
Q 026461           59 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL  138 (238)
Q Consensus        59 ~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~  138 (238)
                      .+++..+ ...++..+||++||.|+.|..|++.   +++|+|+|.++.+++.|++ +..    +++++++++..++...+
T Consensus        12 ~e~le~L-~~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L   82 (285)
T 1wg8_A           12 QEALDLL-AVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHL   82 (285)
T ss_dssp             HHHHHHH-TCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHH
T ss_pred             HHHHHhh-CCCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHH
Confidence            3444444 3456789999999999999999996   6899999999999999998 643    58999999998764433


Q ss_pred             HhcccCCCCeeEEEEcCCccch
Q 026461          139 LKYSENEGSFDYAFVDADKDNY  160 (238)
Q Consensus       139 ~~~~~~~~~fD~V~~d~~~~~~  160 (238)
                      ...  +.+++|.|++|.+.+.+
T Consensus        83 ~~~--g~~~vDgIL~DLGvSS~  102 (285)
T 1wg8_A           83 AAL--GVERVDGILADLGVSSF  102 (285)
T ss_dssp             HHT--TCSCEEEEEEECSCCHH
T ss_pred             HHc--CCCCcCEEEeCCccccc
Confidence            221  23689999999765443

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.60  E-value=1.8e-08  Score=77.24  Aligned_cols=89  Identities=9%  Similarity=0.104  Sum_probs=67.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++.+|||+|||.                 +++|+++.+++.|++.+.     .++++.++|+.+....    +...++
T Consensus        10 ~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~-----~~~~~~~~d~~~~~~~----~~~~~~   63 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTG-----NEGRVSVENIKQLLQS----AHKESS   63 (176)
T ss_dssp             CCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTT-----TTSEEEEEEGGGGGGG----CCCSSC
T ss_pred             CCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhcc-----cCcEEEEechhcCccc----cCCCCC
Confidence            34678999999975                 239999999999998752     2489999998765210    002579


Q ss_pred             eeEEEEcCC---c-cchHHHHHHHHhccCCCeEEEEecc
Q 026461          148 FDYAFVDAD---K-DNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       148 fD~V~~d~~---~-~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      ||+|++...   . .+....++++.+.|||||.+++.+.
T Consensus        64 fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  102 (176)
T 2ld4_A           64 FDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEP  102 (176)
T ss_dssp             EEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcc
Confidence            999998632   2 4568899999999999999999644

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.47  E-value=1.2e-06  Score=64.74  Aligned_cols=95  Identities=9%  Similarity=0.069  Sum_probs=64.5

Q ss_pred             HHHHHHHhh-cCCCEEEEEccccc-HHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHH
Q 026461           60 QLMAMLLRL-VNAKKTIEIGVFTG-YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ  137 (238)
Q Consensus        60 ~~l~~l~~~-~~~~~vLeiG~G~G-~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~  137 (238)
                      .+...+.+. ..+.+|||||||.| ..+.+|++..  +..|+++|+++.+++                ++..|+.+...+
T Consensus        24 ~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~--g~~V~atDInp~Av~----------------~v~dDiF~P~~~   85 (153)
T 2k4m_A           24 DLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHS--KVDLVLTDIKPSHGG----------------IVRDDITSPRME   85 (153)
T ss_dssp             HHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHS--CCEEEEECSSCSSTT----------------EECCCSSSCCHH
T ss_pred             HHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhC--CCeEEEEECCccccc----------------eEEccCCCCccc
Confidence            333333443 34579999999999 5999999753  568999999998766                777787664333


Q ss_pred             HHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          138 LLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       138 ~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      +      -+.||+|+.-.++......+-.+.+.+  |.-+++-
T Consensus        86 ~------Y~~~DLIYsirPP~El~~~i~~lA~~v--~adliI~  120 (153)
T 2k4m_A           86 I------YRGAALIYSIRPPAEIHSSLMRVADAV--GARLIIK  120 (153)
T ss_dssp             H------HTTEEEEEEESCCTTTHHHHHHHHHHH--TCEEEEE
T ss_pred             c------cCCcCEEEEcCCCHHHHHHHHHHHHHc--CCCEEEE
Confidence            2      269999976655666666555555443  3445543

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.45  E-value=2.8e-07  Score=75.68  Aligned_cols=112  Identities=13%  Similarity=0.152  Sum_probs=86.1

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHH
Q 026461           58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ  137 (238)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~  137 (238)
                      ...++..+.. .++..+||+-+|+|..++.+++.   ..+++.+|.++..++..++|+..   ..+++++..|+...+..
T Consensus        80 l~~yf~~l~~-~n~~~~LDlfaGSGaLgiEaLS~---~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~  152 (283)
T 2oo3_A           80 FLEYISVIKQ-INLNSTLSYYPGSPYFAINQLRS---QDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNA  152 (283)
T ss_dssp             GHHHHHHHHH-HSSSSSCCEEECHHHHHHHHSCT---TSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHH
T ss_pred             HHHHHHHHHH-hcCCCceeEeCCcHHHHHHHcCC---CCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHH
Confidence            3445555544 46677999999999999998872   57999999999999999998864   36799999999988877


Q ss_pred             HHhcccCCCCeeEEEEcCCcc---chHHHHHHHHh--ccCCCeEEEE
Q 026461          138 LLKYSENEGSFDYAFVDADKD---NYCNYHERLMK--LLKVGGIAVY  179 (238)
Q Consensus       138 ~~~~~~~~~~fD~V~~d~~~~---~~~~~~~~~~~--~L~~gG~lv~  179 (238)
                      +...   ..+||+||+|.+-+   .+...++.+.+  .+.++|++++
T Consensus       153 l~~~---~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~  196 (283)
T 2oo3_A          153 LLPP---PEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCV  196 (283)
T ss_dssp             HCSC---TTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             hcCC---CCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEE
Confidence            6322   45799999998543   45566655543  5678999887

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.31  E-value=2.9e-06  Score=71.25  Aligned_cols=94  Identities=16%  Similarity=0.145  Sum_probs=70.3

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHH
Q 026461           59 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL  138 (238)
Q Consensus        59 ~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~  138 (238)
                      .+++..| ...++..++|+.+|.|+.|..+++.+++.++|+++|.++++++.++ .+    ..+++++++++..++...+
T Consensus        47 ~Evl~~L-~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~~l~~~L  120 (347)
T 3tka_A           47 DEAVNGL-NIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFSALGEYV  120 (347)
T ss_dssp             HHHHHHT-CCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGGGHHHHH
T ss_pred             HHHHHhh-CCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHHHHHHHH
Confidence            3344433 2456679999999999999999999877899999999999999884 33    2468999999987765555


Q ss_pred             HhcccCCCCeeEEEEcCCccc
Q 026461          139 LKYSENEGSFDYAFVDADKDN  159 (238)
Q Consensus       139 ~~~~~~~~~fD~V~~d~~~~~  159 (238)
                      ...+ -.+++|.|++|.+.+.
T Consensus       121 ~~~g-~~~~vDgILfDLGVSS  140 (347)
T 3tka_A          121 AERD-LIGKIDGILLDLGVSS  140 (347)
T ss_dssp             HHTT-CTTCEEEEEEECSCCH
T ss_pred             HhcC-CCCcccEEEECCccCH
Confidence            3220 0136999999865443

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.02  E-value=2.2e-06  Score=69.90  Aligned_cols=118  Identities=14%  Similarity=0.139  Sum_probs=69.2

Q ss_pred             cHhHHHHHHHHHh--hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           55 APDAGQLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        55 ~~~~~~~l~~l~~--~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      ++...+++...-+  ..+..+|||+|||+|.++..+++..+ ...++++|+.-+........ ...+  .++..+.+++ 
T Consensus        57 SRaA~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~-~~~v~g~dVGvDl~~~pi~~-~~~g--~~ii~~~~~~-  131 (277)
T 3evf_A           57 SRGTAKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKE-VSGVKGFTLGRDGHEKPMNV-QSLG--WNIITFKDKT-  131 (277)
T ss_dssp             STHHHHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTCCCCCCC-CBTT--GGGEEEECSC-
T ss_pred             ccHHHHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcC-CCcceeEEEeccCccccccc-CcCC--CCeEEEeccc-
Confidence            3444444444333  34556899999999999999887644 45788888764321000000 0001  1334445544 


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcCCcc----ch-----HHHHHHHHhccCCC-eEEEEecccc
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDADKD----NY-----CNYHERLMKLLKVG-GIAVYDNTLW  184 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~~~~----~~-----~~~~~~~~~~L~~g-G~lv~~~~~~  184 (238)
                      +.. .+     ..++||+|++|..+.    ..     ...++.+.+.|+|| |.+|+. ++.
T Consensus       132 dv~-~l-----~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~K-Vf~  186 (277)
T 3evf_A          132 DIH-RL-----EPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVK-VLA  186 (277)
T ss_dssp             CTT-TS-----CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE-ESC
T ss_pred             eeh-hc-----CCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEE-ecC
Confidence            211 11     257899999996433    11     12356667899999 999994 543

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.97  E-value=2.8e-05  Score=69.90  Aligned_cols=103  Identities=10%  Similarity=0.052  Sum_probs=77.5

Q ss_pred             CCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC------------CCEEEEEeCCchhHHHHHHHHH
Q 026461           49 WAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE------------DGQITAIDVNRETYEIGLPIIK  116 (238)
Q Consensus        49 ~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~------------~~~v~~iD~~~~~~~~a~~~~~  116 (238)
                      -|..-.++....++..++......+|+|-+||+|...+...+.+..            ...++|+|+++..+..|+-++.
T Consensus       196 ~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~  275 (530)
T 3ufb_A          196 SGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLL  275 (530)
T ss_dssp             CCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHH
T ss_pred             CceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHH
Confidence            3455577888999998888777789999999999998877654421            2469999999999999999988


Q ss_pred             HcCCCCcEEEEecchhHHH-HHHHhcccCCCCeeEEEEcCC
Q 026461          117 KAGVDHKINFIESEALSVL-DQLLKYSENEGSFDYAFVDAD  156 (238)
Q Consensus       117 ~~~~~~~v~~~~~d~~~~l-~~~~~~~~~~~~fD~V~~d~~  156 (238)
                      -.|... .++..+|..... ...    ....+||+|+.+.+
T Consensus       276 lhg~~~-~~I~~~dtL~~~~~~~----~~~~~fD~Il~NPP  311 (530)
T 3ufb_A          276 LHGLEY-PRIDPENSLRFPLREM----GDKDRVDVILTNPP  311 (530)
T ss_dssp             HHTCSC-CEEECSCTTCSCGGGC----CGGGCBSEEEECCC
T ss_pred             hcCCcc-ccccccccccCchhhh----cccccceEEEecCC
Confidence            888753 567888876421 111    11358999999854

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.97  E-value=2.2e-05  Score=66.87  Aligned_cols=72  Identities=8%  Similarity=0.178  Sum_probs=54.5

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++.++||+||++|++|..+++.   +++|++||+.+-. ..    +..   ..+|+++++|+.+..+       ..++
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r---g~~V~aVD~~~l~-~~----l~~---~~~V~~~~~d~~~~~~-------~~~~  270 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGPMA-QS----LMD---TGQVTWLREDGFKFRP-------TRSN  270 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT---TCEEEEECSSCCC-HH----HHT---TTCEEEECSCTTTCCC-------CSSC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC---CCEEEEEEhhhcC-hh----hcc---CCCeEEEeCccccccC-------CCCC
Confidence            346779999999999999999985   6899999986532 11    111   2569999999887633       2468


Q ss_pred             eeEEEEcCCc
Q 026461          148 FDYAFVDADK  157 (238)
Q Consensus       148 fD~V~~d~~~  157 (238)
                      ||+|++|...
T Consensus       271 ~D~vvsDm~~  280 (375)
T 4auk_A          271 ISWMVCDMVE  280 (375)
T ss_dssp             EEEEEECCSS
T ss_pred             cCEEEEcCCC
Confidence            9999999754

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=97.95  E-value=4.8e-05  Score=63.28  Aligned_cols=105  Identities=14%  Similarity=0.182  Sum_probs=67.0

Q ss_pred             CCCEEEEEcccccHHHHHHHh---hCCCCC--EEEEEeCCc--------h-hHHHHHHHHHHcCC--CCc--EEEEecch
Q 026461           70 NAKKTIEIGVFTGYSLLLTAL---TIPEDG--QITAIDVNR--------E-TYEIGLPIIKKAGV--DHK--INFIESEA  131 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~---~~~~~~--~v~~iD~~~--------~-~~~~a~~~~~~~~~--~~~--v~~~~~d~  131 (238)
                      +.-+|||+|-|+|++.+....   ...+..  +++++|..+        + ..+..+..+.....  ..+  +++..+|+
T Consensus        96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa  175 (308)
T 3vyw_A           96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA  175 (308)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred             CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence            345899999999998654322   112244  457777532        1 22223333332210  123  46789999


Q ss_pred             hHHHHHHHhcccCCCCeeEEEEcCCc-----c-chHHHHHHHHhccCCCeEEEE
Q 026461          132 LSVLDQLLKYSENEGSFDYAFVDADK-----D-NYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       132 ~~~l~~~~~~~~~~~~fD~V~~d~~~-----~-~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      .+.++.+.     ...+|++|.|+.-     + ...++++.+.++++|||+++.
T Consensus       176 ~~~l~~l~-----~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT  224 (308)
T 3vyw_A          176 RKRIKEVE-----NFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS  224 (308)
T ss_dssp             HHHGGGCC-----SCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE
T ss_pred             HHHHhhhc-----ccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE
Confidence            99888762     3579999999621     1 236899999999999999984

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=97.92  E-value=1.3e-05  Score=74.33  Aligned_cols=109  Identities=12%  Similarity=0.044  Sum_probs=75.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-------CC----CCEEEEEeCCchhHHHHHH--------------HHHHcC-----
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTI-------PE----DGQITAIDVNRETYEIGLP--------------IIKKAG-----  119 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~-------~~----~~~v~~iD~~~~~~~~a~~--------------~~~~~~-----  119 (238)
                      ++-+|+|+|.|+|++.+.+.+.+       |.    ..+++++|..|-..+..++              .+....     
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            44689999999999998876653       11    2579999996644444443              222221     


Q ss_pred             -----CC-C--cEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccc------hHHHHHHHHhccCCCeEEEEe
Q 026461          120 -----VD-H--KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN------YCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       120 -----~~-~--~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~------~~~~~~~~~~~L~~gG~lv~~  180 (238)
                           +. .  .++++.||+.+.++.+...  ....+|.+|+|+..+.      ..+++..+.+++++||.+...
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~--~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~  210 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDS--LNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTF  210 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGG--GTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEES
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccc--cCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence                 11 1  4668899999988875210  1368999999974322      378899999999999988763

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.88  E-value=5.9e-06  Score=67.54  Aligned_cols=115  Identities=11%  Similarity=0.026  Sum_probs=68.5

Q ss_pred             cHhHHHHHHHHHh--hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           55 APDAGQLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        55 ~~~~~~~l~~l~~--~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      ++...+++...-+  ..+..+|||+|||.|.++...+...+ ...|+++|+.......+... ..  ...++..+..++.
T Consensus        73 SRAAfKL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~g-v~sV~GvdvG~d~~~~pi~~-~~--~g~~ii~~~~~~d  148 (282)
T 3gcz_A           73 SRGSAKLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKN-VKKVMAFTLGVQGHEKPIMR-TT--LGWNLIRFKDKTD  148 (282)
T ss_dssp             STHHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCCC-CB--TTGGGEEEECSCC
T ss_pred             cHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcC-CCeeeeEEeccCcccccccc-cc--CCCceEEeeCCcc
Confidence            4444444444332  34556999999999999999887654 56799999975432111100 00  1112333332221


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcCCcc----ch-----HHHHHHHHhccCCC--eEEEEe
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDADKD----NY-----CNYHERLMKLLKVG--GIAVYD  180 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~~~~----~~-----~~~~~~~~~~L~~g--G~lv~~  180 (238)
                       .. .+     ..+++|+|++|..+.    ..     ...++.+.+.|+||  |.+|+.
T Consensus       149 -v~-~l-----~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~K  200 (282)
T 3gcz_A          149 -VF-NM-----EVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIK  200 (282)
T ss_dssp             -GG-GS-----CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             -hh-hc-----CCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Confidence             11 11     257999999996543    11     23456667899999  999985

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.85  E-value=1.5e-05  Score=64.18  Aligned_cols=96  Identities=13%  Similarity=0.058  Sum_probs=60.5

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhh--CCC-CCEEEEEeC--CchhHHHHHHHHHHcCCCCcEEEEec-chhHHHHHHHhc
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALT--IPE-DGQITAIDV--NRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKY  141 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~--~~~-~~~v~~iD~--~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~l~~~~~~  141 (238)
                      ..+..+|||+||+.|.++.+.++.  ... .+.++++|+  .|-....       .|. +-++|+++ |..+.       
T Consensus        71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~-------~Gv-~~i~~~~G~Df~~~-------  135 (269)
T 2px2_A           71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQS-------YGW-NIVTMKSGVDVFYK-------  135 (269)
T ss_dssp             CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCS-------TTG-GGEEEECSCCGGGS-------
T ss_pred             CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccC-------CCc-eEEEeeccCCccCC-------
Confidence            345669999999999999999986  221 245666662  2211000       111 22466667 88763       


Q ss_pred             ccCCCCeeEEEEcCCccc---------hHHHHHHHHhccCCCe-EEEEe
Q 026461          142 SENEGSFDYAFVDADKDN---------YCNYHERLMKLLKVGG-IAVYD  180 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~~~~---------~~~~~~~~~~~L~~gG-~lv~~  180 (238)
                        ...++|+|++|..+..         ....++.+.+.|+||| .+++.
T Consensus       136 --~~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvK  182 (269)
T 2px2_A          136 --PSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIK  182 (269)
T ss_dssp             --CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             --CCCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEE
Confidence              1468999999964321         1124556668999999 88874

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.80  E-value=7e-05  Score=63.72  Aligned_cols=76  Identities=9%  Similarity=0.046  Sum_probs=57.6

Q ss_pred             CcHhHHHHHHHHHhhc------CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEE
Q 026461           54 TAPDAGQLMAMLLRLV------NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI  127 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~------~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~  127 (238)
                      +++....-+...+...      +...|||||.|.|..|..|++... ..+|+++|+++..+...++.+ .   .++++++
T Consensus        36 ~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~-~---~~~l~ii  110 (353)
T 1i4w_A           36 WNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKF-E---GSPLQIL  110 (353)
T ss_dssp             CCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHT-T---TSSCEEE
T ss_pred             CCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhc-c---CCCEEEE
Confidence            4454444444444443      247899999999999999998633 358999999999999888776 2   3579999


Q ss_pred             ecchhHH
Q 026461          128 ESEALSV  134 (238)
Q Consensus       128 ~~d~~~~  134 (238)
                      .+|+.++
T Consensus       111 ~~D~l~~  117 (353)
T 1i4w_A          111 KRDPYDW  117 (353)
T ss_dssp             CSCTTCH
T ss_pred             ECCccch
Confidence            9999775

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.76  E-value=5.5e-05  Score=62.24  Aligned_cols=100  Identities=11%  Similarity=0.090  Sum_probs=61.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec-chhHHHHHHHhcccCCCC
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEGS  147 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~l~~~~~~~~~~~~  147 (238)
                      .+.++|||+||++|.++..+++..+ ...|+++|+.......... ....+. +.+.+..+ |+..    +     ..++
T Consensus        80 ~~g~~vlDLGaaPGgWsqva~~~~g-v~sV~Gvdlg~~~~~~P~~-~~~~~~-~iv~~~~~~di~~----l-----~~~~  147 (300)
T 3eld_A           80 RITGRVLDLGCGRGGWSYYAAAQKE-VMSVKGYTLGIEGHEKPIH-MQTLGW-NIVKFKDKSNVFT----M-----PTEP  147 (300)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCC-CCBTTG-GGEEEECSCCTTT----S-----CCCC
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHhcC-CceeeeEEecccccccccc-ccccCC-ceEEeecCceeee----c-----CCCC
Confidence            4567999999999999999998654 4578999986532100000 000010 12333322 2221    1     2579


Q ss_pred             eeEEEEcCCcc----ch-----HHHHHHHHhccCCC-eEEEEe
Q 026461          148 FDYAFVDADKD----NY-----CNYHERLMKLLKVG-GIAVYD  180 (238)
Q Consensus       148 fD~V~~d~~~~----~~-----~~~~~~~~~~L~~g-G~lv~~  180 (238)
                      +|+|++|..+.    ..     ...++.+.+.|+|| |.+|+.
T Consensus       148 ~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K  190 (300)
T 3eld_A          148 SDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVK  190 (300)
T ss_dssp             CSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred             cCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence            99999996543    11     23456667899999 999986

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.67  E-value=0.00043  Score=55.08  Aligned_cols=112  Identities=11%  Similarity=0.061  Sum_probs=71.5

Q ss_pred             cHhHHHHHHHHHh--hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec-ch
Q 026461           55 APDAGQLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EA  131 (238)
Q Consensus        55 ~~~~~~~l~~l~~--~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~  131 (238)
                      ++...++....-+  ..+..+|||+||++|.++.+.+.... ..+|+++|+-+.--+. -..++..|. +.++|+.+ |.
T Consensus        61 SRa~~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g-~~~V~avdvG~~ghe~-P~~~~s~gw-n~v~fk~gvDv  137 (267)
T 3p8z_A           61 SRGSAKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKK-VTEVRGYTKGGPGHEE-PVPMSTYGW-NIVKLMSGKDV  137 (267)
T ss_dssp             STHHHHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTT-EEEEEEECCCSTTSCC-CCCCCCTTT-TSEEEECSCCG
T ss_pred             chHHHHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcC-CCEEEEEecCCCCccC-cchhhhcCc-CceEEEeccce
Confidence            4444444443322  44566999999999999998888665 4689999986542210 001123344 45999998 87


Q ss_pred             hHHHHHHHhcccCCCCeeEEEEcCCccch---------HHHHHHHHhccCCCeEEEE
Q 026461          132 LSVLDQLLKYSENEGSFDYAFVDADKDNY---------CNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       132 ~~~l~~~~~~~~~~~~fD~V~~d~~~~~~---------~~~~~~~~~~L~~gG~lv~  179 (238)
                      ...         +..++|.|++|......         ...++.+.+.|++ |-+++
T Consensus       138 ~~~---------~~~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~  184 (267)
T 3p8z_A          138 FYL---------PPEKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCI  184 (267)
T ss_dssp             GGC---------CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE
T ss_pred             eec---------CCccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEE
Confidence            433         14689999999644221         2345556688988 66666

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.62  E-value=0.00023  Score=59.11  Aligned_cols=48  Identities=8%  Similarity=0.011  Sum_probs=42.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG  119 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~  119 (238)
                      .+...|||++||+|..++.++..   +.+++|+|+++.+++.|++++....
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~---g~~~~g~e~~~~~~~~a~~r~~~~~  281 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARW---GRRALGVELVPRYAQLAKERFAREV  281 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHHhc
Confidence            46679999999999999988774   4599999999999999999998754

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.58  E-value=0.00013  Score=62.76  Aligned_cols=77  Identities=19%  Similarity=0.072  Sum_probs=46.5

Q ss_pred             CCEEEEEcccccHHHHHHHhh-------------C---CCCCEEEEEeCCc-----------hhHHHHHHHHHHcCCCCc
Q 026461           71 AKKTIEIGVFTGYSLLLTALT-------------I---PEDGQITAIDVNR-----------ETYEIGLPIIKKAGVDHK  123 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~-------------~---~~~~~v~~iD~~~-----------~~~~~a~~~~~~~~~~~~  123 (238)
                      +-+|+|+||++|.+|+.+...             .   ++..+|+.-|+..           ...+..+   ...|-..+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~---~~~g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLE---KENGRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHH---HHTCCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhh---hhccCCCC
Confidence            568999999999999988765             1   2356788888762           2222211   12222122


Q ss_pred             EEEEecchhHHHHHHHhcccCCCCeeEEEEc
Q 026461          124 INFIESEALSVLDQLLKYSENEGSFDYAFVD  154 (238)
Q Consensus       124 v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d  154 (238)
                      .-|+.+....+-..+    ++.+++|+|+..
T Consensus       130 ~~f~~gvpgSFy~rl----fp~~S~d~v~Ss  156 (384)
T 2efj_A          130 SCLIGAMPGSFYSRL----FPEESMHFLHSC  156 (384)
T ss_dssp             SEEEEECCSCTTSCC----SCTTCEEEEEEE
T ss_pred             ceEEEecchhhhhcc----CCCCceEEEEec
Confidence            355555544432222    346899999986

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.57  E-value=6.9e-05  Score=64.28  Aligned_cols=108  Identities=10%  Similarity=0.090  Sum_probs=63.4

Q ss_pred             CCEEEEEcccccHHHHHHHhh--------C------CCCCEEEEEeCCchhHHHHHHHHHHcC-----------CCCcEE
Q 026461           71 AKKTIEIGVFTGYSLLLTALT--------I------PEDGQITAIDVNRETYEIGLPIIKKAG-----------VDHKIN  125 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~--------~------~~~~~v~~iD~~~~~~~~a~~~~~~~~-----------~~~~v~  125 (238)
                      +-+|+|+||++|..|+.+...        +      ++..+|..-|+...-....=+.+....           ...+.-
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            468999999999999987331        1      246788888876655444433332210           000112


Q ss_pred             EEecchhHHHHHHHhcccCCCCeeEEEEcC---Ccc--------------------------------------chHHHH
Q 026461          126 FIESEALSVLDQLLKYSENEGSFDYAFVDA---DKD--------------------------------------NYCNYH  164 (238)
Q Consensus       126 ~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~---~~~--------------------------------------~~~~~~  164 (238)
                      |..+....+-..+    ++.++||+|+...   |..                                      ++..++
T Consensus       133 f~~gvpgSFy~rl----fP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL  208 (374)
T 3b5i_A          133 FVAGVPGSFYRRL----FPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFL  208 (374)
T ss_dssp             EEEEEESCTTSCC----SCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhccc----CCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3322222211111    2368999999863   222                                      223356


Q ss_pred             HHHHhccCCCeEEEEecc
Q 026461          165 ERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       165 ~~~~~~L~~gG~lv~~~~  182 (238)
                      +...+.|+|||.+++.-.
T Consensus       209 ~~ra~eL~pGG~mvl~~~  226 (374)
T 3b5i_A          209 RARAAEVKRGGAMFLVCL  226 (374)
T ss_dssp             HHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHhCCCCEEEEEEe
Confidence            667899999999998544

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.50  E-value=2.2e-05  Score=66.93  Aligned_cols=108  Identities=12%  Similarity=0.069  Sum_probs=70.0

Q ss_pred             CCEEEEEcccccHHHHHHHhh---------------CCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHH
Q 026461           71 AKKTIEIGVFTGYSLLLTALT---------------IPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL  135 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~---------------~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l  135 (238)
                      +-+|+|+||++|.+|+.+...               -++..+|+.-|+...-....-+.+.......+.-|..+....+-
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy  131 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence            457999999999999887665               23468899999988877777665543211112345554443322


Q ss_pred             HHHHhcccCCCCeeEEEEcC---Cccc---------------------------------hHHHHHHHHhccCCCeEEEE
Q 026461          136 DQLLKYSENEGSFDYAFVDA---DKDN---------------------------------YCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       136 ~~~~~~~~~~~~fD~V~~d~---~~~~---------------------------------~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ..+    ++.+++|+||...   |...                                 +..+++...+.|+|||.+++
T Consensus       132 ~rl----fp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl  207 (359)
T 1m6e_X          132 GRL----FPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVL  207 (359)
T ss_dssp             SCC----SCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred             hcc----CCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence            222    3468999999763   2111                                 12346666789999999998


Q ss_pred             ecc
Q 026461          180 DNT  182 (238)
Q Consensus       180 ~~~  182 (238)
                      .-.
T Consensus       208 ~~~  210 (359)
T 1m6e_X          208 TIL  210 (359)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            644

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=97.45  E-value=0.00052  Score=63.34  Aligned_cols=107  Identities=15%  Similarity=0.112  Sum_probs=71.4

Q ss_pred             CEEEEEcccccHHHHHHHhhC-------C----CCCEEEEEeC---CchhHHH-----------HHHHHHHcCCC-----
Q 026461           72 KKTIEIGVFTGYSLLLTALTI-------P----EDGQITAIDV---NRETYEI-----------GLPIIKKAGVD-----  121 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~-------~----~~~~v~~iD~---~~~~~~~-----------a~~~~~~~~~~-----  121 (238)
                      -+|+|+|.|+|++.+...+.+       |    ...+++++|.   +++.+..           +++.+......     
T Consensus        68 ~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (676)
T 3ps9_A           68 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCH  147 (676)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEEE
T ss_pred             eEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCce
Confidence            489999999999987766543       1    1256999998   4443332           22333332210     


Q ss_pred             --------CcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCcc------chHHHHHHHHhccCCCeEEEEe
Q 026461          122 --------HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------NYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       122 --------~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~------~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                              -.+++..+|+.+.++.+...  ....||.+|+|+.-+      ...+++..+.+++++||.+...
T Consensus       148 ~~~~~~~~~~l~l~~gd~~~~l~~~~~~--~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~  218 (676)
T 3ps9_A          148 RLLLDAGRVTLDLWFGDINELTSQLDDS--LNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATF  218 (676)
T ss_dssp             EEEEGGGTEEEEEEESCHHHHGGGBCGG--GTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEES
T ss_pred             EEEecCCcEEEEEecCCHHHHHHhcccc--cCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence                    13457889999988775211  136899999997321      2467889999999999998864

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.35  E-value=0.0014  Score=53.79  Aligned_cols=113  Identities=13%  Similarity=0.086  Sum_probs=69.7

Q ss_pred             cHhHHHHHHHHHh--hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec-ch
Q 026461           55 APDAGQLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EA  131 (238)
Q Consensus        55 ~~~~~~~l~~l~~--~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~  131 (238)
                      ++...++....-.  ..+..+|||+||++|.++.+.+.... ..+|+++|+-..--+.- ..+++.+. +.|.++.+ |+
T Consensus        77 SR~~~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~g-v~~V~avdvG~~~he~P-~~~~ql~w-~lV~~~~~~Dv  153 (321)
T 3lkz_A           77 SRGTAKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKR-VQEVRGYTKGGPGHEEP-QLVQSYGW-NIVTMKSGVDV  153 (321)
T ss_dssp             STHHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTT-EEEEEEECCCSTTSCCC-CCCCBTTG-GGEEEECSCCT
T ss_pred             chHHHHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcC-CCEEEEEEcCCCCccCc-chhhhcCC-cceEEEeccCH
Confidence            4444444444332  34556999999999999998887654 45899999865411000 00011222 33888877 76


Q ss_pred             hHHHHHHHhcccCCCCeeEEEEcCCccc---------hHHHHHHHHhccCCC-eEEEE
Q 026461          132 LSVLDQLLKYSENEGSFDYAFVDADKDN---------YCNYHERLMKLLKVG-GIAVY  179 (238)
Q Consensus       132 ~~~l~~~~~~~~~~~~fD~V~~d~~~~~---------~~~~~~~~~~~L~~g-G~lv~  179 (238)
                      ....         ..++|+|++|.....         ....++.+.+.|++| |-+|+
T Consensus       154 ~~l~---------~~~~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~  202 (321)
T 3lkz_A          154 FYRP---------SECCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV  202 (321)
T ss_dssp             TSSC---------CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             hhCC---------CCCCCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE
Confidence            4441         367999999964221         123455556788888 77777

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=97.34  E-value=0.00066  Score=57.95  Aligned_cols=102  Identities=19%  Similarity=0.267  Sum_probs=67.5

Q ss_pred             hcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           68 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        68 ~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ..+..+||.+|+|. |..++.+|+... ..+|+++|.+++..+.+++.    |...-+.....+..+.+.+..     .+
T Consensus       188 ~~~g~~VlV~GaG~vG~~a~qlak~~G-a~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~~~-----~g  257 (371)
T 1f8f_A          188 VTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQL----GATHVINSKTQDPVAAIKEIT-----DG  257 (371)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHHH----TCSEEEETTTSCHHHHHHHHT-----TS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHHc----CCCEEecCCccCHHHHHHHhc-----CC
Confidence            44667999999875 778888888764 33799999999988887653    532111111123333333331     24


Q ss_pred             CeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461          147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      .+|+||-...   ....++.++++|+++|.+++-..
T Consensus       258 g~D~vid~~g---~~~~~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          258 GVNFALESTG---SPEILKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             CEEEEEECSC---CHHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCcEEEECCC---CHHHHHHHHHHHhcCCEEEEeCC
Confidence            8999985543   24567788899999999887543

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.29  E-value=0.00073  Score=55.49  Aligned_cols=89  Identities=13%  Similarity=0.163  Sum_probs=59.7

Q ss_pred             cCCCEEEEEcc------cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcc
Q 026461           69 VNAKKTIEIGV------FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS  142 (238)
Q Consensus        69 ~~~~~vLeiG~------G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~  142 (238)
                      ..+.+|||+|+      ..|..  .+.+..|.++.|+++|+.+-..           ..+  .++++|..+..       
T Consensus       108 p~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~s-----------da~--~~IqGD~~~~~-------  165 (344)
T 3r24_A          108 PYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVS-----------DAD--STLIGDCATVH-------  165 (344)
T ss_dssp             CTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBC-----------SSS--EEEESCGGGEE-------
T ss_pred             cCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCccccc-----------CCC--eEEEccccccc-------
Confidence            34679999996      66763  3444455346999999987531           112  45999975531       


Q ss_pred             cCCCCeeEEEEcCCcc--------------chHHHHHHHHhccCCCeEEEEe
Q 026461          143 ENEGSFDYAFVDADKD--------------NYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       143 ~~~~~fD~V~~d~~~~--------------~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                       ..++||+|++|..+.              .....++.+.+.|+|||.+++.
T Consensus       166 -~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK  216 (344)
T 3r24_A          166 -TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK  216 (344)
T ss_dssp             -ESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -cCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEE
Confidence             148999999994211              1234455567899999999987

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=97.24  E-value=0.00098  Score=56.13  Aligned_cols=100  Identities=13%  Similarity=0.169  Sum_probs=68.5

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           67 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ...+..+||-+|+|. |..++.+++...  .+|+++|.+++..+.+++    .|...-+.....+..+.+...      .
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~------~  230 (340)
T 3s2e_A          163 DTRPGQWVVISGIGGLGHVAVQYARAMG--LRVAAVDIDDAKLNLARR----LGAEVAVNARDTDPAAWLQKE------I  230 (340)
T ss_dssp             TCCTTSEEEEECCSTTHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHH------H
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH----cCCCEEEeCCCcCHHHHHHHh------C
Confidence            345677999999874 888889998764  699999999998887765    354221221122333333322      2


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      +.+|+||....   ....++.+.++|+++|.++.-.
T Consensus       231 g~~d~vid~~g---~~~~~~~~~~~l~~~G~iv~~G  263 (340)
T 3s2e_A          231 GGAHGVLVTAV---SPKAFSQAIGMVRRGGTIALNG  263 (340)
T ss_dssp             SSEEEEEESSC---CHHHHHHHHHHEEEEEEEEECS
T ss_pred             CCCCEEEEeCC---CHHHHHHHHHHhccCCEEEEeC
Confidence            58999986643   3556778889999999988754

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=97.23  E-value=0.00099  Score=57.82  Aligned_cols=49  Identities=16%  Similarity=0.196  Sum_probs=43.3

Q ss_pred             cCCCEEEEEcccccHHHHHHH-hhCCCCCEEEEEeCCchhHHHHHHHHHH
Q 026461           69 VNAKKTIEIGVFTGYSLLLTA-LTIPEDGQITAIDVNRETYEIGLPIIKK  117 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la-~~~~~~~~v~~iD~~~~~~~~a~~~~~~  117 (238)
                      .+...++|||++.|..+..++ ...++.++|+++|++|..++..++++..
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~  274 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  274 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            466799999999999999988 4555358999999999999999999987

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=97.15  E-value=0.0026  Score=53.90  Aligned_cols=103  Identities=13%  Similarity=0.062  Sum_probs=67.4

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecc---hhHHHHHHHhc
Q 026461           66 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE---ALSVLDQLLKY  141 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~l~~~~~~  141 (238)
                      ....+..+||-+|+|. |..++.++..+. ..+|+++|.+++..+.+++    .|..   .++..+   ..+....+...
T Consensus       167 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~~i~~~  238 (356)
T 1pl8_A          167 GGVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAKE----IGAD---LVLQISKESPQEIARKVEGQ  238 (356)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTCS---EEEECSSCCHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----hCCC---EEEcCcccccchHHHHHHHH
Confidence            3455678999999874 778888888764 3489999999988877764    3542   223222   22332222111


Q ss_pred             ccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          142 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                       . ...+|+||-...   ....+...+++|+++|.++.-.
T Consensus       239 -~-~~g~D~vid~~g---~~~~~~~~~~~l~~~G~iv~~G  273 (356)
T 1pl8_A          239 -L-GCKPEVTIECTG---AEASIQAGIYATRSGGTLVLVG  273 (356)
T ss_dssp             -H-TSCCSEEEECSC---CHHHHHHHHHHSCTTCEEEECS
T ss_pred             -h-CCCCCEEEECCC---ChHHHHHHHHHhcCCCEEEEEe
Confidence             0 257999986543   2445677889999999988743

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=97.14  E-value=0.001  Score=57.43  Aligned_cols=106  Identities=16%  Similarity=0.140  Sum_probs=68.8

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch-hHHHHHHHhccc
Q 026461           66 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA-LSVLDQLLKYSE  143 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~l~~~~~~~~  143 (238)
                      ....+..+||.+|+|. |..++.+|+... ..+|+++|.+++..+.+++    .|. .-+.+...+. .+.+..+.    
T Consensus       181 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa-~~i~~~~~~~~~~~~~~~~----  250 (398)
T 2dph_A          181 AGVKPGSHVYIAGAGPVGRCAAAGARLLG-AACVIVGDQNPERLKLLSD----AGF-ETIDLRNSAPLRDQIDQIL----  250 (398)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHT----TTC-EEEETTSSSCHHHHHHHHH----
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCC-cEEcCCCcchHHHHHHHHh----
Confidence            3455678999999875 788888888764 3499999999988877654    354 2122112232 33333332    


Q ss_pred             CCCCeeEEEEcCCccc-----------hHHHHHHHHhccCCCeEEEEec
Q 026461          144 NEGSFDYAFVDADKDN-----------YCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~~-----------~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ....+|+||-......           ....++.+++.|+++|.+++-.
T Consensus       251 ~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G  299 (398)
T 2dph_A          251 GKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG  299 (398)
T ss_dssp             SSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred             CCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence            1237999986543221           1346788889999999988644

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=97.05  E-value=0.0012  Score=55.96  Aligned_cols=106  Identities=17%  Similarity=0.223  Sum_probs=68.6

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           66 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      ....+..+||-+|+|. |..++.+|.... ..+|+++|.+++..+.+++.    |...-+.....+..+.+.+..    .
T Consensus       162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~l----Ga~~vi~~~~~~~~~~v~~~t----~  232 (352)
T 3fpc_A          162 ANIKLGDTVCVIGIGPVGLMSVAGANHLG-AGRIFAVGSRKHCCDIALEY----GATDIINYKNGDIVEQILKAT----D  232 (352)
T ss_dssp             TTCCTTCCEEEECCSHHHHHHHHHHHTTT-CSSEEEECCCHHHHHHHHHH----TCCEEECGGGSCHHHHHHHHT----T
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHHh----CCceEEcCCCcCHHHHHHHHc----C
Confidence            3455678899999874 777888888754 34899999999888877653    542211111233333333331    1


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ...+|+||-....   ...++.++++|+++|.++.-...
T Consensus       233 g~g~D~v~d~~g~---~~~~~~~~~~l~~~G~~v~~G~~  268 (352)
T 3fpc_A          233 GKGVDKVVIAGGD---VHTFAQAVKMIKPGSDIGNVNYL  268 (352)
T ss_dssp             TCCEEEEEECSSC---TTHHHHHHHHEEEEEEEEECCCC
T ss_pred             CCCCCEEEECCCC---hHHHHHHHHHHhcCCEEEEeccc
Confidence            3479999854322   34567788999999998875443

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=97.02  E-value=0.0021  Score=54.81  Aligned_cols=107  Identities=11%  Similarity=0.086  Sum_probs=68.7

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           66 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      ....+..+||-+|+|. |..++.+|.... ..+|+++|.+++..+.+++.    |...-+.....|..+.+......  .
T Consensus       178 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~i~~~~~~--~  250 (370)
T 4ej6_A          178 SGIKAGSTVAILGGGVIGLLTVQLARLAG-ATTVILSTRQATKRRLAEEV----GATATVDPSAGDVVEAIAGPVGL--V  250 (370)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHHHHHHHHH----TCSEEECTTSSCHHHHHHSTTSS--S
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHc----CCCEEECCCCcCHHHHHHhhhhc--c
Confidence            4456678999999874 777788888764 34999999999988877653    54321211122332332220000  1


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      .+.+|+||-..   .....++.++++|++||.+++-..
T Consensus       251 ~gg~Dvvid~~---G~~~~~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          251 PGGVDVVIECA---GVAETVKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             TTCEEEEEECS---CCHHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCCCEEEECC---CCHHHHHHHHHHhccCCEEEEEec
Confidence            34899998543   224567788899999999987543

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=97.02  E-value=0.0012  Score=51.00  Aligned_cols=100  Identities=14%  Similarity=0.060  Sum_probs=61.6

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           68 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        68 ~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ..+.++||.+|+  |.|..+..++...  +.+|++++.+++..+.+++    .|....+.....+..+.+....    ..
T Consensus        36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~~~~~~----~~  105 (198)
T 1pqw_A           36 LSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLSR----LGVEYVGDSRSVDFADEILELT----DG  105 (198)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHT----TCCSEEEETTCSTHHHHHHHHT----TT
T ss_pred             CCCCCEEEEeeCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEeeCCcHHHHHHHHHHh----CC
Confidence            446679999994  4566666666654  4689999999887765543    3432111111112222222221    12


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ..+|+|+....    ...++.+.+.|+++|.++.-.
T Consensus       106 ~~~D~vi~~~g----~~~~~~~~~~l~~~G~~v~~g  137 (198)
T 1pqw_A          106 YGVDVVLNSLA----GEAIQRGVQILAPGGRFIELG  137 (198)
T ss_dssp             CCEEEEEECCC----THHHHHHHHTEEEEEEEEECS
T ss_pred             CCCeEEEECCc----hHHHHHHHHHhccCCEEEEEc
Confidence            47999996653    246778889999999988743

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=97.00  E-value=0.0062  Score=51.16  Aligned_cols=105  Identities=20%  Similarity=0.132  Sum_probs=70.1

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           67 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ...+..+||-+|+|. |..++.++.... ...++++|.+++..+.+++    .|...-+.....+..+....+..    .
T Consensus       157 ~~~~g~~VlV~GaG~vG~~aiq~ak~~G-~~~vi~~~~~~~k~~~a~~----lGa~~~i~~~~~~~~~~~~~~~~----~  227 (346)
T 4a2c_A          157 QGCENKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDISSEKLALAKS----FGAMQTFNSSEMSAPQMQSVLRE----L  227 (346)
T ss_dssp             TCCTTSEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHGG----G
T ss_pred             ccCCCCEEEEECCCCcchHHHHHHHHcC-CcEEEEEechHHHHHHHHH----cCCeEEEeCCCCCHHHHHHhhcc----c
Confidence            345677999999864 556677787765 5678999999998887765    36533233333444444444421    3


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ..+|+|+-..   .....++.+.++|++||.+++-...
T Consensus       228 ~g~d~v~d~~---G~~~~~~~~~~~l~~~G~~v~~g~~  262 (346)
T 4a2c_A          228 RFNQLILETA---GVPQTVELAVEIAGPHAQLALVGTL  262 (346)
T ss_dssp             CSSEEEEECS---CSHHHHHHHHHHCCTTCEEEECCCC
T ss_pred             CCcccccccc---cccchhhhhhheecCCeEEEEEecc
Confidence            6788887544   2356677888999999999875543

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=96.96  E-value=0.0033  Score=53.88  Aligned_cols=102  Identities=9%  Similarity=-0.000  Sum_probs=68.9

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHH-HHHhcccCCCCeeE
Q 026461           72 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD-QLLKYSENEGSFDY  150 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~-~~~~~~~~~~~fD~  150 (238)
                      .+++|+.||.|..++.+..+-  -..+.++|+++.+++..+.|+      ....++.+|+.++.. .+.......+.+|+
T Consensus         3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~------~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~   74 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINF------PRSLHVQEDVSLLNAEIIKGFFKNDMPIDG   74 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHC------TTSEEECCCGGGCCHHHHHHHHCSCCCCCE
T ss_pred             CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhC------CCCceEecChhhcCHHHHHhhcccCCCeeE
Confidence            479999999999999988752  235779999999999888875      236778889877532 22100001468999


Q ss_pred             EEEcCCccch----------------HHHHHHHHhccCCCeEEEEeccc
Q 026461          151 AFVDADKDNY----------------CNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       151 V~~d~~~~~~----------------~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      |+.+.+++.+                ..+++. ...++| -+++++|+.
T Consensus        75 i~ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~-v~~~~P-~~~v~ENV~  121 (376)
T 3g7u_A           75 IIGGPPCQGFSSIGKGNPDDSRNQLYMHFYRL-VSELQP-LFFLAENVP  121 (376)
T ss_dssp             EEECCCCCTTC-------CHHHHHHHHHHHHH-HHHHCC-SEEEEEECT
T ss_pred             EEecCCCCCcccccCCCCCCchHHHHHHHHHH-HHHhCC-CEEEEecch
Confidence            9998664332                223332 356688 567777764

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=96.94  E-value=0.011  Score=49.76  Aligned_cols=104  Identities=16%  Similarity=0.096  Sum_probs=69.5

Q ss_pred             hhcCCCEEEEEccccc-HHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           67 RLVNAKKTIEIGVFTG-YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~G-~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ...+..+||-+|+|.+ ..+..++.... ..+|+++|.+++..+.+++    .|...-+.....|..+.+.++.    ..
T Consensus       160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~-g~~Vi~~~~~~~r~~~~~~----~Ga~~~i~~~~~~~~~~v~~~t----~g  230 (348)
T 4eez_A          160 GVKPGDWQVIFGAGGLGNLAIQYAKNVF-GAKVIAVDINQDKLNLAKK----IGADVTINSGDVNPVDEIKKIT----GG  230 (348)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTS-CCEEEEEESCHHHHHHHHH----TTCSEEEEC-CCCHHHHHHHHT----TS
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHhC-CCEEEEEECcHHHhhhhhh----cCCeEEEeCCCCCHHHHhhhhc----CC
Confidence            3456679999999854 45556666554 6899999999988776664    3543334444555555555442    23


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      ..+|.++.+..   ....+....+.|+++|.+++-..
T Consensus       231 ~g~d~~~~~~~---~~~~~~~~~~~l~~~G~~v~~g~  264 (348)
T 4eez_A          231 LGVQSAIVCAV---ARIAFEQAVASLKPMGKMVAVAV  264 (348)
T ss_dssp             SCEEEEEECCS---CHHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCceEEEEecc---CcchhheeheeecCCceEEEEec
Confidence            56888887653   25567778899999999887543

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=96.93  E-value=0.0011  Score=56.21  Aligned_cols=76  Identities=14%  Similarity=0.065  Sum_probs=56.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeE
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  150 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~  150 (238)
                      +.+++|+.||.|..++.+...--....|+++|+++.+++..+.|+.      ...++.+|+.++......    ...+|+
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~------~~~~~~~Di~~~~~~~~~----~~~~D~   71 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFD----RLSFDM   71 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHH----HHCCSE
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc------ccccccCCHHHccHhHcC----cCCcCE
Confidence            4579999999999999998752101369999999999999998863      245778898876432110    127999


Q ss_pred             EEEcCC
Q 026461          151 AFVDAD  156 (238)
Q Consensus       151 V~~d~~  156 (238)
                      |+.+.+
T Consensus        72 l~~gpP   77 (343)
T 1g55_A           72 ILMSPP   77 (343)
T ss_dssp             EEECCC
T ss_pred             EEEcCC
Confidence            998865

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=96.93  E-value=0.0023  Score=51.94  Aligned_cols=49  Identities=8%  Similarity=0.072  Sum_probs=40.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCC
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV  120 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~  120 (238)
                      .+...|||..||+|..++.....   +-+++|+|+++..++.+++++...++
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~---gr~~ig~e~~~~~~~~~~~r~~~~~~  259 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLNQLEI  259 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC---
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHhccC
Confidence            46779999999999998887764   45999999999999999999876553

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.89  E-value=0.0043  Score=53.55  Aligned_cols=106  Identities=8%  Similarity=0.058  Sum_probs=64.6

Q ss_pred             hcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           68 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        68 ~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ..+..+||-+|+|. |..++.+|+... ..+|+++|.+++..+.+++.    |...-+.....+..+.+.++.    ...
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~~l----Ga~~vi~~~~~~~~~~i~~~t----~g~  281 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAG-ASKVILSEPSEVRRNLAKEL----GADHVIDPTKENFVEAVLDYT----NGL  281 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHHHHHHHHH----TCSEEECTTTSCHHHHHHHHT----TTC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHc----CCCEEEcCCCCCHHHHHHHHh----CCC
Confidence            34567899999863 667777888764 34999999999988887654    532111111223333333331    134


Q ss_pred             CeeEEEEcCCcc--chHHHHHHHHhccCCCeEEEEecc
Q 026461          147 SFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       147 ~fD~V~~d~~~~--~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      .+|+||-.....  .....++.+++.++++|.+++-..
T Consensus       282 g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          282 GAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             CCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred             CCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence            799998654332  223333444455599999887543

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=96.87  E-value=0.0041  Score=52.38  Aligned_cols=103  Identities=14%  Similarity=0.134  Sum_probs=69.2

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           67 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ...+..+||-+|+|. |..++.+++... ..+|+++|.+++..+.+++    .|...-+.. ..+..+.+.++..    .
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g-~~~Vi~~~~~~~~~~~~~~----lGa~~~i~~-~~~~~~~v~~~t~----g  237 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVS-AARVIAVDLDDDRLALARE----VGADAAVKS-GAGAADAIRELTG----G  237 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESCHHHHHHHHH----TTCSEEEEC-STTHHHHHHHHHG----G
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCCCEEEcC-CCcHHHHHHHHhC----C
Confidence            345677999999874 777888888764 5799999999998887765    364321211 1233333333321    2


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      ..+|+||-...   ....++.+++.|+++|.++.-..
T Consensus       238 ~g~d~v~d~~G---~~~~~~~~~~~l~~~G~iv~~G~  271 (345)
T 3jv7_A          238 QGATAVFDFVG---AQSTIDTAQQVVAVDGHISVVGI  271 (345)
T ss_dssp             GCEEEEEESSC---CHHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCeEEEECCC---CHHHHHHHHHHHhcCCEEEEECC
Confidence            48999986442   24567788899999999987543

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.85  E-value=0.0044  Score=53.30  Aligned_cols=106  Identities=14%  Similarity=0.096  Sum_probs=68.4

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecc-hhHHHHHHHhcccC
Q 026461           67 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLKYSEN  144 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~l~~~~~~~~~  144 (238)
                      ...+..+||-+|+|. |..++.+|+.+. ..+|+++|.+++..+.+++    .|. +.+.+...+ ..+.+..+.    .
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~G-a~~Vi~~~~~~~~~~~a~~----lGa-~~i~~~~~~~~~~~v~~~t----~  251 (398)
T 1kol_A          182 GVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKA----QGF-EIADLSLDTPLHEQIAALL----G  251 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTC-EEEETTSSSCHHHHHHHHH----S
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCC-CCeEEEEcCCHHHHHHHHH----cCC-cEEccCCcchHHHHHHHHh----C
Confidence            455678999999864 778888888764 3489999999998887764    354 112111112 223333331    1


Q ss_pred             CCCeeEEEEcCCccc------------hHHHHHHHHhccCCCeEEEEecc
Q 026461          145 EGSFDYAFVDADKDN------------YCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~------------~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      ...+|+||-......            ....++.++++|++||.+++-..
T Consensus       252 g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~  301 (398)
T 1kol_A          252 EPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  301 (398)
T ss_dssp             SSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence            247999986543221            23467888899999999887543

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=96.82  E-value=0.01  Score=50.12  Aligned_cols=106  Identities=11%  Similarity=0.066  Sum_probs=66.4

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe-cchhHHHHHHHhccc
Q 026461           66 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSE  143 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~l~~~~~~~~  143 (238)
                      ....+..+||-+|+|. |..++.++...  +.+|++++.+++..+.+++    .|...-+.... .+..+.+....... 
T Consensus       164 ~~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~~i~~~~~~~-  236 (352)
T 1e3j_A          164 AGVQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKN----CGADVTLVVDPAKEEESSIIERIRSA-  236 (352)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----TTCSEEEECCTTTSCHHHHHHHHHHH-
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCcccccHHHHHHHHhccc-
Confidence            3455678999999864 67778888876  4679999999988887764    35431111111 22223333221100 


Q ss_pred             CCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ....+|+||-...   ....++.++++|+++|.++.-.
T Consensus       237 ~g~g~D~vid~~g---~~~~~~~~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          237 IGDLPNVTIDCSG---NEKCITIGINITRTGGTLMLVG  271 (352)
T ss_dssp             SSSCCSEEEECSC---CHHHHHHHHHHSCTTCEEEECS
T ss_pred             cCCCCCEEEECCC---CHHHHHHHHHHHhcCCEEEEEe
Confidence            0257999986543   2445677889999999988743

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.81  E-value=0.0058  Score=52.07  Aligned_cols=99  Identities=16%  Similarity=0.280  Sum_probs=66.1

Q ss_pred             hcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec-----chhHHHHHHHhc
Q 026461           68 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-----EALSVLDQLLKY  141 (238)
Q Consensus        68 ~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~~l~~~~~~  141 (238)
                      ..+..+||-+|+|. |..++.+|+... ..+|+++|.+++..+.+++    .|..   .++..     +..+.+....  
T Consensus       190 ~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~~~--  259 (374)
T 1cdo_A          190 VEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAKV----FGAT---DFVNPNDHSEPISQVLSKMT--  259 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCC---EEECGGGCSSCHHHHHHHHH--
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----hCCc---eEEeccccchhHHHHHHHHh--
Confidence            44567999999863 677788888764 3389999999998887764    3542   22221     2333333331  


Q ss_pred             ccCCCCeeEEEEcCCccchHHHHHHHHhccCCC-eEEEEecc
Q 026461          142 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT  182 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  182 (238)
                         .+.+|+||-...   ....+..++++|+++ |.++.-..
T Consensus       260 ---~~g~D~vid~~g---~~~~~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          260 ---NGGVDFSLECVG---NVGVMRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             ---TSCBSEEEECSC---CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred             ---CCCCCEEEECCC---CHHHHHHHHHHhhcCCcEEEEEcC
Confidence               248999986542   245677888999999 99887443

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.78  E-value=0.0057  Score=52.14  Aligned_cols=102  Identities=20%  Similarity=0.249  Sum_probs=66.2

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe--cchhHHHHHHHhcccC
Q 026461           68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSEN  144 (238)
Q Consensus        68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~l~~~~~~~~~  144 (238)
                      ..+..+||-+|+| .|..++.+|+.+. ..+|+++|.+++..+.+++    .|...-+....  .+..+.+.+..     
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~v~~~~-----  262 (376)
T 1e3i_A          193 VTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKA----LGATDCLNPRELDKPVQDVITELT-----  262 (376)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHHH-----
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCcEEEccccccchHHHHHHHHh-----
Confidence            4456799999986 3677788888764 3489999999998887764    35421111111  12333333331     


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCC-eEEEEecc
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT  182 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  182 (238)
                      .+.+|+||-...   ....++.++++|+++ |.+++-..
T Consensus       263 ~~g~Dvvid~~G---~~~~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          263 AGGVDYSLDCAG---TAQTLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             TSCBSEEEESSC---CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             CCCccEEEECCC---CHHHHHHHHHHhhcCCCEEEEECC
Confidence            248999985432   245677888999999 99887443

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.76  E-value=0.0047  Score=52.63  Aligned_cols=101  Identities=15%  Similarity=0.228  Sum_probs=65.7

Q ss_pred             hcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe--cchhHHHHHHHhcccC
Q 026461           68 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSEN  144 (238)
Q Consensus        68 ~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~l~~~~~~~~~  144 (238)
                      ..+..+||-+|+|. |..++.+|+... ..+|+++|.+++..+.+++    .|...-+....  .+..+.+.++.     
T Consensus       189 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~i~~~t-----  258 (373)
T 1p0f_A          189 VTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAIE----LGATECLNPKDYDKPIYEVICEKT-----  258 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHHT-----
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCcEEEecccccchHHHHHHHHh-----
Confidence            44567999999863 677778887764 3489999999998887764    35421111111  12333333331     


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCC-eEEEEec
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN  181 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~  181 (238)
                      .+.+|+||-...   ....+..++++|+++ |.++.-.
T Consensus       259 ~gg~Dvvid~~g---~~~~~~~~~~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          259 NGGVDYAVECAG---RIETMMNALQSTYCGSGVTVVLG  293 (373)
T ss_dssp             TSCBSEEEECSC---CHHHHHHHHHTBCTTTCEEEECC
T ss_pred             CCCCCEEEECCC---CHHHHHHHHHHHhcCCCEEEEEc
Confidence            248999985432   245677888999999 9988744

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.73  E-value=0.003  Score=53.99  Aligned_cols=102  Identities=21%  Similarity=0.277  Sum_probs=67.5

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEE--ecchhHHHHHHHhcccC
Q 026461           68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI--ESEALSVLDQLLKYSEN  144 (238)
Q Consensus        68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~--~~d~~~~l~~~~~~~~~  144 (238)
                      ..+..+||-+|+| .|..++.+|+... ..+|+++|.+++..+.+++    .|...-+...  ..+..+.+.++.     
T Consensus       191 ~~~g~~VlV~GaG~vG~~a~q~a~~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~i~~~~-----  260 (378)
T 3uko_A          191 VEPGSNVAIFGLGTVGLAVAEGAKTAG-ASRIIGIDIDSKKYETAKK----FGVNEFVNPKDHDKPIQEVIVDLT-----  260 (378)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHHT-CSCEEEECSCTTHHHHHHT----TTCCEEECGGGCSSCHHHHHHHHT-----
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCcEEEccccCchhHHHHHHHhc-----
Confidence            4456789999986 4777788888764 3489999999998887764    3542211111  123333444431     


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCC-eEEEEecc
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT  182 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  182 (238)
                      .+.+|+||-...   ....++.+.++|++| |.+++-..
T Consensus       261 ~gg~D~vid~~g---~~~~~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          261 DGGVDYSFECIG---NVSVMRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             TSCBSEEEECSC---CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred             CCCCCEEEECCC---CHHHHHHHHHHhhccCCEEEEEcc
Confidence            348999985442   355678888999996 99887544

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=96.73  E-value=0.016  Score=42.85  Aligned_cols=102  Identities=13%  Similarity=0.128  Sum_probs=68.5

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeE
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  150 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~  150 (238)
                      +.-|||+|-|.|..=-+|.+.+| +-+|+.+|..-..-..        ...+.-.++.||+.+.++..... + ..+.-+
T Consensus        41 ~GpVlElGLGNGRTydHLRe~~P-~R~I~vfDR~~~~hp~--------~~P~~e~~ilGdi~~tL~~~~~r-~-g~~a~L  109 (174)
T 3iht_A           41 SGPVYELGLGNGRTYHHLRQHVQ-GREIYVFERAVASHPD--------STPPEAQLILGDIRETLPATLER-F-GATASL  109 (174)
T ss_dssp             CSCEEEECCTTCHHHHHHHHHCC-SSCEEEEESSCCCCGG--------GCCCGGGEEESCHHHHHHHHHHH-H-CSCEEE
T ss_pred             CCceEEecCCCChhHHHHHHhCC-CCcEEEEEeeeccCCC--------CCCchHheecccHHHHHHHHHHh-c-CCceEE
Confidence            45699999999999999999998 8899999974321100        11233578999999988874321 0 356666


Q ss_pred             EEEcCCccchHH---HH----HHHHhccCCCeEEEEeccc
Q 026461          151 AFVDADKDNYCN---YH----ERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       151 V~~d~~~~~~~~---~~----~~~~~~L~~gG~lv~~~~~  183 (238)
                      +..|....+-..   +.    ..+.++|.|||++|-+.-+
T Consensus       110 aHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~pl  149 (174)
T 3iht_A          110 VHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDRM  149 (174)
T ss_dssp             EEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSCC
T ss_pred             EEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence            777754332211   11    2234789999999987655

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.71  E-value=0.0064  Score=51.80  Aligned_cols=98  Identities=14%  Similarity=0.286  Sum_probs=65.4

Q ss_pred             hcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec-----chhHHHHHHHhc
Q 026461           68 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-----EALSVLDQLLKY  141 (238)
Q Consensus        68 ~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~~l~~~~~~  141 (238)
                      ..+..+||-+|+|. |..++.++.... ..+|+++|.+++..+.+++    .|..   .++..     +..+.+.++.  
T Consensus       189 ~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~~~--  258 (374)
T 2jhf_A          189 VTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKE----VGAT---ECVNPQDYKKPIQEVLTEMS--  258 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHHHT--
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCc---eEecccccchhHHHHHHHHh--
Confidence            44567999999864 677778888764 3389999999998887764    3542   22221     2233333331  


Q ss_pred             ccCCCCeeEEEEcCCccchHHHHHHHHhccCCC-eEEEEec
Q 026461          142 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN  181 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~  181 (238)
                         .+.+|+||-...   ....+..++++|+++ |.++.-.
T Consensus       259 ---~~g~D~vid~~g---~~~~~~~~~~~l~~~~G~iv~~G  293 (374)
T 2jhf_A          259 ---NGGVDFSFEVIG---RLDTMVTALSCCQEAYGVSVIVG  293 (374)
T ss_dssp             ---TSCBSEEEECSC---CHHHHHHHHHHBCTTTCEEEECS
T ss_pred             ---CCCCcEEEECCC---CHHHHHHHHHHhhcCCcEEEEec
Confidence               248999985543   245677788999999 9988744

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=96.70  E-value=0.0067  Score=51.64  Aligned_cols=101  Identities=18%  Similarity=0.293  Sum_probs=65.5

Q ss_pred             hcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe--cchhHHHHHHHhcccC
Q 026461           68 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSEN  144 (238)
Q Consensus        68 ~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~l~~~~~~~~~  144 (238)
                      ..+..+||-+|+|. |..++.+|+... ..+|+++|.+++..+.+++.    |...-+....  .+..+.+.++.     
T Consensus       188 ~~~g~~VlV~GaG~vG~~avqla~~~G-a~~Vi~~~~~~~~~~~~~~l----Ga~~vi~~~~~~~~~~~~v~~~~-----  257 (373)
T 2fzw_A          188 LEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAKEF----GATECINPQDFSKPIQEVLIEMT-----  257 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHHH----TCSEEECGGGCSSCHHHHHHHHT-----
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHHc----CCceEeccccccccHHHHHHHHh-----
Confidence            44567999999863 667777887654 33899999999998888653    5421111110  12233333331     


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCC-eEEEEec
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN  181 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~  181 (238)
                      .+.+|+||-...   ....++.++++|+++ |.++.-.
T Consensus       258 ~~g~D~vid~~g---~~~~~~~~~~~l~~~~G~iv~~G  292 (373)
T 2fzw_A          258 DGGVDYSFECIG---NVKVMRAALEACHKGWGVSVVVG  292 (373)
T ss_dssp             TSCBSEEEECSC---CHHHHHHHHHTBCTTTCEEEECS
T ss_pred             CCCCCEEEECCC---cHHHHHHHHHhhccCCcEEEEEe
Confidence            248999985542   245677888999999 9988744

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.66  E-value=0.0031  Score=53.57  Aligned_cols=101  Identities=17%  Similarity=0.126  Sum_probs=66.6

Q ss_pred             hcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe-cchhHHHHHHHhcccCC
Q 026461           68 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENE  145 (238)
Q Consensus        68 ~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~l~~~~~~~~~~  145 (238)
                      ..+..+||-+|+|. |..++.+++..  +.+|++++.+++..+.+++.    |...-+. .. .+..+.+..+.    ..
T Consensus       187 ~~~g~~VlV~G~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~l----Ga~~vi~-~~~~~~~~~v~~~~----~g  255 (363)
T 3uog_A          187 LRAGDRVVVQGTGGVALFGLQIAKAT--GAEVIVTSSSREKLDRAFAL----GADHGIN-RLEEDWVERVYALT----GD  255 (363)
T ss_dssp             CCTTCEEEEESSBHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHH----TCSEEEE-TTTSCHHHHHHHHH----TT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEecCchhHHHHHHc----CCCEEEc-CCcccHHHHHHHHh----CC
Confidence            45667999999874 77778888876  46999999999888877653    5422122 11 22333333332    13


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ..+|+||-....    ..+..+++.|+++|.+++-...
T Consensus       256 ~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~G~~  289 (363)
T 3uog_A          256 RGADHILEIAGG----AGLGQSLKAVAPDGRISVIGVL  289 (363)
T ss_dssp             CCEEEEEEETTS----SCHHHHHHHEEEEEEEEEECCC
T ss_pred             CCceEEEECCCh----HHHHHHHHHhhcCCEEEEEecC
Confidence            489999866542    2356677899999998875443

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=96.65  E-value=0.072  Score=44.28  Aligned_cols=111  Identities=9%  Similarity=0.011  Sum_probs=71.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCC--CCcEEEEecchhH-HHHHHHhcccCCC
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--DHKINFIESEALS-VLDQLLKYSENEG  146 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~-~l~~~~~~~~~~~  146 (238)
                      .++.||++|||  .-|....-..+...+|+-+| .|+.++..++.+...+.  ..+..++.+|..+ ++..+...+....
T Consensus       102 g~~QvV~LGaG--lDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~  178 (310)
T 2uyo_A          102 GIRQFVILASG--LDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS  178 (310)
T ss_dssp             TCCEEEEETCT--TCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred             CCCeEEEeCCC--CCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCC
Confidence            46789999995  44443333234357899999 59999999999986543  3568889999876 3333322211111


Q ss_pred             CeeEEEEcCC-----ccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          147 SFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       147 ~fD~V~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ..=++++-+.     ......+++.+...+.||+.|+++.+.
T Consensus       179 ~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~  220 (310)
T 2uyo_A          179 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP  220 (310)
T ss_dssp             SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred             CCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence            2223333332     233456777887888899999998754

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=96.63  E-value=0.019  Score=48.57  Aligned_cols=106  Identities=10%  Similarity=0.001  Sum_probs=68.2

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe--cchhHHHHHHHhcc
Q 026461           66 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYS  142 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~l~~~~~~~  142 (238)
                      ....+..+||-+|+|. |..++.+|+... ..+|+++|.+++..+.+++. .    ..-+.+..  .+..++...+.+. 
T Consensus       175 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~l-~----~~~~~~~~~~~~~~~~~~~v~~~-  247 (363)
T 3m6i_A          175 AGVRLGDPVLICGAGPIGLITMLCAKAAG-ACPLVITDIDEGRLKFAKEI-C----PEVVTHKVERLSAEESAKKIVES-  247 (363)
T ss_dssp             HTCCTTCCEEEECCSHHHHHHHHHHHHTT-CCSEEEEESCHHHHHHHHHH-C----TTCEEEECCSCCHHHHHHHHHHH-
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHh-c----hhcccccccccchHHHHHHHHHH-
Confidence            3455677899999864 777788888764 33499999999999888865 2    12233331  1122222222111 


Q ss_pred             cCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          143 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       143 ~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      .....+|+||-...   ....+..+.++|+++|.+++-.
T Consensus       248 t~g~g~Dvvid~~g---~~~~~~~~~~~l~~~G~iv~~G  283 (363)
T 3m6i_A          248 FGGIEPAVALECTG---VESSIAAAIWAVKFGGKVFVIG  283 (363)
T ss_dssp             TSSCCCSEEEECSC---CHHHHHHHHHHSCTTCEEEECC
T ss_pred             hCCCCCCEEEECCC---ChHHHHHHHHHhcCCCEEEEEc
Confidence            12358999986443   2456777889999999998743

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=96.60  E-value=0.0011  Score=69.35  Aligned_cols=102  Identities=15%  Similarity=0.094  Sum_probs=55.3

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCC----CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPE----DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~----~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ..+|||||.|+|..+..+...+..    ..+++..|+++...+.+++.++...    ++.-.-|..+..      ++...
T Consensus      1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d----i~~~~~d~~~~~------~~~~~ 1310 (2512)
T 2vz8_A         1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH----VTQGQWDPANPA------PGSLG 1310 (2512)
T ss_dssp             EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT----EEEECCCSSCCC------C----
T ss_pred             CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc----cccccccccccc------cCCCC
Confidence            458999999999988887776642    2479999999998888887776532    332111211100      00136


Q ss_pred             CeeEEEEcCCc---cchHHHHHHHHhccCCCeEEEEecc
Q 026461          147 SFDYAFVDADK---DNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       147 ~fD~V~~d~~~---~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      +||+|+.....   .+....+.++.++|+|||.+++...
T Consensus      1311 ~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A         1311 KADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp             -CCEEEEECC--------------------CCEEEEEEC
T ss_pred             ceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEec
Confidence            79999976432   3556778888999999999988654

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.57  E-value=0.0047  Score=51.76  Aligned_cols=101  Identities=13%  Similarity=0.109  Sum_probs=66.2

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           67 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        67 ~~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      ...+.++||-+|+  |.|..+..++...  +.+|++++.+++..+.+.+   ..|...-+.....+..+.+....     
T Consensus       146 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~-----  215 (336)
T 4b7c_A          146 QPKNGETVVISGAAGAVGSVAGQIARLK--GCRVVGIAGGAEKCRFLVE---ELGFDGAIDYKNEDLAAGLKREC-----  215 (336)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH---TTCCSEEEETTTSCHHHHHHHHC-----
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH---HcCCCEEEECCCHHHHHHHHHhc-----
Confidence            4556789999998  5677788888765  4699999999887776632   23542111111223333333331     


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      .+.+|+||-....    ..+..+.+.|+++|.++.-.
T Consensus       216 ~~~~d~vi~~~g~----~~~~~~~~~l~~~G~iv~~G  248 (336)
T 4b7c_A          216 PKGIDVFFDNVGG----EILDTVLTRIAFKARIVLCG  248 (336)
T ss_dssp             TTCEEEEEESSCH----HHHHHHHTTEEEEEEEEECC
T ss_pred             CCCceEEEECCCc----chHHHHHHHHhhCCEEEEEe
Confidence            3579999865542    46778889999999988743

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=96.54  E-value=0.01  Score=50.30  Aligned_cols=100  Identities=16%  Similarity=0.110  Sum_probs=66.0

Q ss_pred             hhcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           67 RLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        67 ~~~~~~~vLeiG--~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      ...+.++||-+|  .|.|..++.++...  +.+|++++.+++..+.+++    .|...-+.....+..+.+...     .
T Consensus       160 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~~~~~-----~  228 (362)
T 2c0c_A          160 GLSEGKKVLVTAAAGGTGQFAMQLSKKA--KCHVIGTCSSDEKSAFLKS----LGCDRPINYKTEPVGTVLKQE-----Y  228 (362)
T ss_dssp             CCCTTCEEEETTTTBTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTTSCHHHHHHHH-----C
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHH----cCCcEEEecCChhHHHHHHHh-----c
Confidence            455678999999  45788888888876  4689999999888777764    353211111112222333332     1


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ...+|+||-....    ..++.+.+.|+++|.++.-.
T Consensus       229 ~~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~g  261 (362)
T 2c0c_A          229 PEGVDVVYESVGG----AMFDLAVDALATKGRLIVIG  261 (362)
T ss_dssp             TTCEEEEEECSCT----HHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCCEEEECCCH----HHHHHHHHHHhcCCEEEEEe
Confidence            3579999865442    46777889999999888743

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.52  E-value=0.021  Score=48.64  Aligned_cols=97  Identities=18%  Similarity=0.195  Sum_probs=65.4

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           67 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ...+..+||-+|+|. |..++.+|...  +.+|++++.+++..+.+++    .|..   .++.....+....+      .
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~------~  255 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKA----LGAD---EVVNSRNADEMAAH------L  255 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH----HTCS---EEEETTCHHHHHTT------T
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCc---EEeccccHHHHHHh------h
Confidence            445678999999874 77778888876  4689999999999888875    3532   22322222333333      2


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      +.+|+||-.....   ..++.+++.|+++|.++.-.
T Consensus       256 ~g~Dvvid~~g~~---~~~~~~~~~l~~~G~iv~~G  288 (369)
T 1uuf_A          256 KSFDFILNTVAAP---HNLDDFTTLLKRDGTMTLVG  288 (369)
T ss_dssp             TCEEEEEECCSSC---CCHHHHHTTEEEEEEEEECC
T ss_pred             cCCCEEEECCCCH---HHHHHHHHHhccCCEEEEec
Confidence            5899998654332   23456779999999888643

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=96.48  E-value=0.007  Score=50.62  Aligned_cols=99  Identities=11%  Similarity=0.091  Sum_probs=63.6

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe-cchhHHHHHHHhcccC
Q 026461           68 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSEN  144 (238)
Q Consensus        68 ~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~l~~~~~~~~~  144 (238)
                      ..+.++||..|+  |.|..+..++...  +.+|++++.+++..+.+++    .|....+.... .+..+.+....     
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~~~~~~~-----  211 (333)
T 1v3u_A          143 VKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQ----IGFDAAFNYKTVNSLEEALKKAS-----  211 (333)
T ss_dssp             CCSSCEEEEESTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTSCSCHHHHHHHHC-----
T ss_pred             CCCCCEEEEecCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh----cCCcEEEecCCHHHHHHHHHHHh-----
Confidence            445679999997  5667777777764  4699999999887776633    24321111111 22333333331     


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      .+.+|+++.....    ..+..++++|++||.+++-.
T Consensus       212 ~~~~d~vi~~~g~----~~~~~~~~~l~~~G~~v~~g  244 (333)
T 1v3u_A          212 PDGYDCYFDNVGG----EFLNTVLSQMKDFGKIAICG  244 (333)
T ss_dssp             TTCEEEEEESSCH----HHHHHHHTTEEEEEEEEECC
T ss_pred             CCCCeEEEECCCh----HHHHHHHHHHhcCCEEEEEe
Confidence            2579999876543    34677889999999988643

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=96.48  E-value=0.0057  Score=51.08  Aligned_cols=100  Identities=8%  Similarity=0.014  Sum_probs=65.2

Q ss_pred             hcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           68 LVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        68 ~~~~~~vLeiG--~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ..+.++||-+|  .|.|..+..++...  +.+|++++.+++..+.+++.    |...-+.....+..+.+.+..    ..
T Consensus       138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~----Ga~~~~~~~~~~~~~~~~~~~----~~  207 (325)
T 3jyn_A          138 VKPGEIILFHAAAGGVGSLACQWAKAL--GAKLIGTVSSPEKAAHAKAL----GAWETIDYSHEDVAKRVLELT----DG  207 (325)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHH----TCSEEEETTTSCHHHHHHHHT----TT
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc----CCCEEEeCCCccHHHHHHHHh----CC
Confidence            34567899998  34677778888765  46999999999988877653    532111111222333333331    13


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ..+|+||-....    ..+..++++|+++|.++.-.
T Consensus       208 ~g~Dvvid~~g~----~~~~~~~~~l~~~G~iv~~g  239 (325)
T 3jyn_A          208 KKCPVVYDGVGQ----DTWLTSLDSVAPRGLVVSFG  239 (325)
T ss_dssp             CCEEEEEESSCG----GGHHHHHTTEEEEEEEEECC
T ss_pred             CCceEEEECCCh----HHHHHHHHHhcCCCEEEEEe
Confidence            589998865543    45667789999999988754

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.47  E-value=0.011  Score=49.54  Aligned_cols=100  Identities=18%  Similarity=0.186  Sum_probs=65.3

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           67 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        67 ~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ...+..+||-+|+| .|..++.++...  +.+|++++.+++..+.+++    .|...-+.+...+..+.+...      .
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~d~~~~~~~~~~~~~------~  228 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKE----LGADLVVNPLKEDAAKFMKEK------V  228 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTCSEEECTTTSCHHHHHHHH------H
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----CCCCEEecCCCccHHHHHHHH------h
Confidence            45567899999986 477778888775  4699999999988887754    354211111111222233332      1


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      +.+|+||-...   ....++.++++|+++|.++.-.
T Consensus       229 ~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~g  261 (339)
T 1rjw_A          229 GGVHAAVVTAV---SKPAFQSAYNSIRRGGACVLVG  261 (339)
T ss_dssp             SSEEEEEESSC---CHHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCEEEECCC---CHHHHHHHHHHhhcCCEEEEec
Confidence            57999986543   2456677889999999888643

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.43  E-value=0.0052  Score=51.66  Aligned_cols=102  Identities=15%  Similarity=0.034  Sum_probs=65.2

Q ss_pred             hhcCCCEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           67 RLVNAKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        67 ~~~~~~~vLeiG~G--~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      ...+.++||-+|+|  .|..+..++...  +.+|++++.+++..+.+++.    |...-+.....+..+.+....    .
T Consensus       141 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~l----ga~~~~~~~~~~~~~~~~~~~----~  210 (340)
T 3gms_A          141 NLQRNDVLLVNACGSAIGHLFAQLSQIL--NFRLIAVTRNNKHTEELLRL----GAAYVIDTSTAPLYETVMELT----N  210 (340)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHHH----TCSEEEETTTSCHHHHHHHHT----T
T ss_pred             ccCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhC----CCcEEEeCCcccHHHHHHHHh----C
Confidence            34567799999986  677778888765  46999999999988888763    532111111223333333331    1


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      ...+|+||-.....   .. ....++|+++|.++.-..
T Consensus       211 ~~g~Dvvid~~g~~---~~-~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          211 GIGADAAIDSIGGP---DG-NELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             TSCEEEEEESSCHH---HH-HHHHHTEEEEEEEEECCC
T ss_pred             CCCCcEEEECCCCh---hH-HHHHHHhcCCCEEEEEee
Confidence            35899998654432   22 334489999999987544

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=96.42  E-value=0.0049  Score=51.65  Aligned_cols=100  Identities=18%  Similarity=0.137  Sum_probs=65.0

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           68 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        68 ~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ..+.++||-+|+  |.|..+..++...  +.+|++++.+++..+.+++    .|...-+.....+..+.+.+..    ..
T Consensus       146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~~~~~~~~~~~~~~~~~~~----~~  215 (334)
T 3qwb_A          146 VKKGDYVLLFAAAGGVGLILNQLLKMK--GAHTIAVASTDEKLKIAKE----YGAEYLINASKEDILRQVLKFT----NG  215 (334)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHT----TT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCcEEEeCCCchHHHHHHHHh----CC
Confidence            446679999993  4677778888875  4699999999888777654    3532111111223333333331    13


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ..+|+||-....    ..++.+.++|+++|.++.-.
T Consensus       216 ~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~G  247 (334)
T 3qwb_A          216 KGVDASFDSVGK----DTFEISLAALKRKGVFVSFG  247 (334)
T ss_dssp             SCEEEEEECCGG----GGHHHHHHHEEEEEEEEECC
T ss_pred             CCceEEEECCCh----HHHHHHHHHhccCCEEEEEc
Confidence            579999865542    45677789999999988743

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=96.41  E-value=0.0065  Score=51.07  Aligned_cols=95  Identities=9%  Similarity=-0.032  Sum_probs=66.3

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeE
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  150 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~  150 (238)
                      ..+++|+.||.|..++.+...-  ...+.++|+++.+++..+.|+...     .   .+|+.++.+..      ...+|+
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG--~~~v~~~e~d~~a~~t~~~N~~~~-----~---~~Di~~~~~~~------~~~~D~   74 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCG--AECVYSNEWDKYAQEVYEMNFGEK-----P---EGDITQVNEKT------IPDHDI   74 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTT--CEEEEEECCCHHHHHHHHHHHSCC-----C---BSCGGGSCGGG------SCCCSE
T ss_pred             CCcEEEECCCcCHHHHHHHHCC--CeEEEEEeCCHHHHHHHHHHcCCC-----C---cCCHHHcCHhh------CCCCCE
Confidence            4689999999999999988742  346889999999999999987321     1   67887754322      357999


Q ss_pred             EEEcCCccc-----------------hHHHHHHHHhccCCCeEEEEeccc
Q 026461          151 AFVDADKDN-----------------YCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       151 V~~d~~~~~-----------------~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      |+.+.+++.                 +.++++. .+.++| -+++++|+.
T Consensus        75 l~~gpPCQ~fS~ag~~~g~~d~r~~L~~~~~r~-i~~~~P-~~~~~ENV~  122 (327)
T 2c7p_A           75 LCAGFPCQAFSISGKQKGFEDSRGTLFFDIARI-VREKKP-KVVFMENVK  122 (327)
T ss_dssp             EEEECCCTTTCTTSCCCGGGSTTSCHHHHHHHH-HHHHCC-SEEEEEEEG
T ss_pred             EEECCCCCCcchhcccCCCcchhhHHHHHHHHH-HHhccC-cEEEEeCcH
Confidence            998743221                 1233333 355688 477888875

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=96.37  E-value=0.0095  Score=50.11  Aligned_cols=99  Identities=11%  Similarity=0.103  Sum_probs=64.9

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           68 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        68 ~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ..+.++||-+|+  |.|..+..++...  +.+|++++.+++..+.+++.    |...-+... .+..+.+....    ..
T Consensus       157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~----ga~~v~~~~-~~~~~~v~~~~----~~  225 (342)
T 4eye_A          157 LRAGETVLVLGAAGGIGTAAIQIAKGM--GAKVIAVVNRTAATEFVKSV----GADIVLPLE-EGWAKAVREAT----GG  225 (342)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHH----TCSEEEESS-TTHHHHHHHHT----TT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhc----CCcEEecCc-hhHHHHHHHHh----CC
Confidence            445679999996  5678888888876  46999999999988877763    532111111 23333333331    12


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ..+|+||-.....    .+..++++|+++|.++.-.
T Consensus       226 ~g~Dvvid~~g~~----~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          226 AGVDMVVDPIGGP----AFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             SCEEEEEESCC------CHHHHHHTEEEEEEEEEC-
T ss_pred             CCceEEEECCchh----HHHHHHHhhcCCCEEEEEE
Confidence            4799998665432    4567789999999988744

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=96.36  E-value=0.017  Score=48.55  Aligned_cols=100  Identities=15%  Similarity=0.083  Sum_probs=64.9

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEE-ecchhHHHHHHHhcccC
Q 026461           68 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI-ESEALSVLDQLLKYSEN  144 (238)
Q Consensus        68 ~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~l~~~~~~~~~  144 (238)
                      ..+.++||.+|+  |.|..+..++...  +.+|++++.+++..+.+++    .|...-+.+. ..+..+.+....     
T Consensus       167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~V~~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~~~~~~~-----  235 (347)
T 2hcy_A          167 LMAGHWVAISGAAGGLGSLAVQYAKAM--GYRVLGIDGGEGKEELFRS----IGGEVFIDFTKEKDIVGAVLKAT-----  235 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECSTTHHHHHHH----TTCCEEEETTTCSCHHHHHHHHH-----
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHC--CCcEEEEcCCHHHHHHHHH----cCCceEEecCccHhHHHHHHHHh-----
Confidence            456679999998  5677777777765  4699999999887776654    3432111111 122233333331     


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      .+.+|+|+....   ....++.+.+.|+++|.++.-.
T Consensus       236 ~~~~D~vi~~~g---~~~~~~~~~~~l~~~G~iv~~g  269 (347)
T 2hcy_A          236 DGGAHGVINVSV---SEAAIEASTRYVRANGTTVLVG  269 (347)
T ss_dssp             TSCEEEEEECSS---CHHHHHHHTTSEEEEEEEEECC
T ss_pred             CCCCCEEEECCC---cHHHHHHHHHHHhcCCEEEEEe
Confidence            237999987653   2456778889999999988744

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=96.35  E-value=0.024  Score=47.62  Aligned_cols=100  Identities=16%  Similarity=0.128  Sum_probs=65.9

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch-hHHHHHHHhcccC
Q 026461           67 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA-LSVLDQLLKYSEN  144 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~l~~~~~~~~~  144 (238)
                      .. +..+||-+|+|. |..++.+|+...++.+|++++.+++..+.+++.    |..   .++..+. .+....+.    .
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~~----~  235 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALEL----GAD---YVSEMKDAESLINKLT----D  235 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH----TCS---EEECHHHHHHHHHHHH----T
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh----CCC---EEeccccchHHHHHhh----c
Confidence            45 678999999863 667778887751146899999999988877653    532   2232111 22333332    1


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ...+|+||-...   ....++.+.++|+++|.++.-.
T Consensus       236 g~g~D~vid~~g---~~~~~~~~~~~l~~~G~iv~~g  269 (344)
T 2h6e_A          236 GLGASIAIDLVG---TEETTYNLGKLLAQEGAIILVG  269 (344)
T ss_dssp             TCCEEEEEESSC---CHHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCccEEEECCC---ChHHHHHHHHHhhcCCEEEEeC
Confidence            248999986543   2446777889999999988743

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=96.35  E-value=0.0098  Score=50.11  Aligned_cols=100  Identities=13%  Similarity=0.066  Sum_probs=63.6

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      +..+||-+|+| .|..++.++.... ..+|++++.+++..+.+++.    |...-+.....+..+.+.++.    ....+
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~G-a~~Vi~~~~~~~~~~~~~~~----Ga~~~~~~~~~~~~~~v~~~~----~g~g~  237 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASG-AYPVIVSEPSDFRRELAKKV----GADYVINPFEEDVVKEVMDIT----DGNGV  237 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTT-CCSEEEECSCHHHHHHHHHH----TCSEEECTTTSCHHHHHHHHT----TTSCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHh----CCCEEECCCCcCHHHHHHHHc----CCCCC
Confidence            56789999985 3667777887653 23899999998888777643    532111111122233333331    12479


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      |+||-...   ....++.+.+.|+++|.++.-.
T Consensus       238 D~vid~~g---~~~~~~~~~~~l~~~G~iv~~g  267 (348)
T 2d8a_A          238 DVFLEFSG---APKALEQGLQAVTPAGRVSLLG  267 (348)
T ss_dssp             EEEEECSC---CHHHHHHHHHHEEEEEEEEECC
T ss_pred             CEEEECCC---CHHHHHHHHHHHhcCCEEEEEc
Confidence            99986543   2456677889999999888743

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=96.33  E-value=0.022  Score=47.91  Aligned_cols=101  Identities=13%  Similarity=0.101  Sum_probs=66.4

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeE
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  150 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~  150 (238)
                      +-+++|+.||.|+.+..+..+--....|.++|+++.+++..+.|+.      ...++.+|+.++.+....    ...+|+
T Consensus         3 ~~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~------~~~~~~~DI~~~~~~~~~----~~~~D~   72 (333)
T 4h0n_A            3 SHKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP------ETNLLNRNIQQLTPQVIK----KWNVDT   72 (333)
T ss_dssp             CEEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECCCGGGCCHHHHH----HTTCCE
T ss_pred             CCEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC------CCceeccccccCCHHHhc----cCCCCE
Confidence            3479999999999999888752111357899999999988888762      234677888775332211    137999


Q ss_pred             EEEcCCccc-----------------hHHHHHHHHhccC-CCeEEEEeccc
Q 026461          151 AFVDADKDN-----------------YCNYHERLMKLLK-VGGIAVYDNTL  183 (238)
Q Consensus       151 V~~d~~~~~-----------------~~~~~~~~~~~L~-~gG~lv~~~~~  183 (238)
                      ++...+++.                 +.++++. .+.++ | -+++++|+.
T Consensus        73 l~ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~r~-i~~~~~P-~~~vlENV~  121 (333)
T 4h0n_A           73 ILMSPPCQPFTRNGKYLDDNDPRTNSFLYLIGI-LDQLDNV-DYILMENVK  121 (333)
T ss_dssp             EEECCCCCCSEETTEECCTTCTTSCCHHHHHHH-GGGCTTC-CEEEEEECT
T ss_pred             EEecCCCcchhhhhhccCCcCcccccHHHHHHH-HHHhcCC-CEEEEecch
Confidence            987643221                 2233333 35565 7 577888875

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=96.29  E-value=0.0081  Score=51.34  Aligned_cols=102  Identities=12%  Similarity=0.112  Sum_probs=64.0

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecc---hhHHHHHHHhccc
Q 026461           68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE---ALSVLDQLLKYSE  143 (238)
Q Consensus        68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~l~~~~~~~~  143 (238)
                      ..+..+||-+|+| .|..++.+|.... ..+|++++.+++..+.+++    .|..   .++..+   ..++.+.+.+- .
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~v~~~-~  263 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEE----IGAD---LTLNRRETSVEERRKAIMDI-T  263 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHHH-T
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHcC-CceEEEEcCCHHHHHHHHH----cCCc---EEEeccccCcchHHHHHHHH-h
Confidence            3456799999965 4667778888753 2599999999988877764    3542   223322   22222222111 1


Q ss_pred             CCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ....+|+||-....   ...+..++++|+++|.++.-.
T Consensus       264 ~g~g~Dvvid~~g~---~~~~~~~~~~l~~~G~iv~~G  298 (380)
T 1vj0_A          264 HGRGADFILEATGD---SRALLEGSELLRRGGFYSVAG  298 (380)
T ss_dssp             TTSCEEEEEECSSC---TTHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCCcEEEECCCC---HHHHHHHHHHHhcCCEEEEEe
Confidence            12379999865432   245667789999999988744

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=96.29  E-value=0.011  Score=49.35  Aligned_cols=100  Identities=13%  Similarity=0.159  Sum_probs=64.0

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           68 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        68 ~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ..+.++||-+|+  |.|..+..++...  +.+|++++.+++..+.+++    .|...-+.....+..+.+....    ..
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~i~~~~----~~  212 (333)
T 1wly_A          143 VKPGDYVLIHAAAGGMGHIMVPWARHL--GATVIGTVSTEEKAETARK----LGCHHTINYSTQDFAEVVREIT----GG  212 (333)
T ss_dssp             CCTTCEEEETTTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHH----TT
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCCEEEECCCHHHHHHHHHHh----CC
Confidence            345678999994  5777788888765  4699999999888777765    2432111111122222333221    13


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ..+|+||-....    ..++.+.++|+++|.++.-.
T Consensus       213 ~~~d~vi~~~g~----~~~~~~~~~l~~~G~iv~~g  244 (333)
T 1wly_A          213 KGVDVVYDSIGK----DTLQKSLDCLRPRGMCAAYG  244 (333)
T ss_dssp             CCEEEEEECSCT----TTHHHHHHTEEEEEEEEECC
T ss_pred             CCCeEEEECCcH----HHHHHHHHhhccCCEEEEEe
Confidence            479999866543    45677889999999888743

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=96.15  E-value=0.11  Score=43.52  Aligned_cols=120  Identities=13%  Similarity=0.159  Sum_probs=75.8

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC--------------------
Q 026461           60 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--------------------  119 (238)
Q Consensus        60 ~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--------------------  119 (238)
                      .++...+...+.+.|+.+|||.......+....+ ..+++-||. |+.++.-++.+...+                    
T Consensus        87 ~~v~~fl~~~~~~qVV~LGaGlDTr~~RL~~~~~-~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~  164 (334)
T 1rjd_A           87 AAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLI  164 (334)
T ss_dssp             HHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCT-TEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEE
T ss_pred             HHHHHHHHHCCCcEEEEeCCCCccHHHHhcCcCC-CCEEEECCC-HHHHHHHHHHhhhccchhhhccccccccccccccc
Confidence            3333344335668999999999999888887544 567777777 888888888877652                    


Q ss_pred             CCCcEEEEecchhHH--HHHHHhcccCCCCeeEEEEcCC-----ccchHHHHHHHHhccCCCeEE-EEecc
Q 026461          120 VDHKINFIESEALSV--LDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIA-VYDNT  182 (238)
Q Consensus       120 ~~~~v~~~~~d~~~~--l~~~~~~~~~~~~fD~V~~d~~-----~~~~~~~~~~~~~~L~~gG~l-v~~~~  182 (238)
                      ...+..++.+|..+.  +..+...........+++.-+.     ......+++.+.... |+|.+ +++-+
T Consensus       165 ~~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i  234 (334)
T 1rjd_A          165 DQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPI  234 (334)
T ss_dssp             ECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEEC
T ss_pred             CCCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEecc
Confidence            136789999998763  3332222111234556665543     334466777776666 56655 45543

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.14  E-value=0.0088  Score=49.86  Aligned_cols=100  Identities=13%  Similarity=0.099  Sum_probs=62.9

Q ss_pred             hcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           68 LVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        68 ~~~~~~vLeiG--~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ..+.++||-+|  .|.|..+..++...  +.+|++++.+++..+.+++.    |...-+.....+..+.+....    ..
T Consensus       138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~----~~  207 (327)
T 1qor_A          138 IKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALKA----GAWQVINYREEDLVERLKEIT----GG  207 (327)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHH----TCSEEEETTTSCHHHHHHHHT----TT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHc----CCCEEEECCCccHHHHHHHHh----CC
Confidence            34567899999  45666777777654  46999999998887777652    432111111112222222221    12


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ..+|+||-...    ...++.++++|+++|.++.-.
T Consensus       208 ~~~D~vi~~~g----~~~~~~~~~~l~~~G~iv~~g  239 (327)
T 1qor_A          208 KKVRVVYDSVG----RDTWERSLDCLQRRGLMVSFG  239 (327)
T ss_dssp             CCEEEEEECSC----GGGHHHHHHTEEEEEEEEECC
T ss_pred             CCceEEEECCc----hHHHHHHHHHhcCCCEEEEEe
Confidence            47999987665    345677889999999888643

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=96.13  E-value=0.014  Score=49.13  Aligned_cols=103  Identities=19%  Similarity=0.157  Sum_probs=64.5

Q ss_pred             hhcCCCEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           67 RLVNAKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        67 ~~~~~~~vLeiG~G--~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      ...+.++||-+|+|  .|..+..++.... +.+|+++|.+++..+.+++.    |...-+.....+..+.+..+.    .
T Consensus       167 ~~~~g~~vlV~Gagg~iG~~~~~~a~~~~-Ga~Vi~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~----~  237 (347)
T 1jvb_A          167 SLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKRA----GADYVINASMQDPLAEIRRIT----E  237 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHHH----TCSEEEETTTSCHHHHHHHHT----T
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHHh----CCCEEecCCCccHHHHHHHHh----c
Confidence            34567899999987  5566677776652 46899999999888777542    432111111112222233331    1


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      .+.+|+||-....   ...++.++++|+++|.++.-.
T Consensus       238 ~~~~d~vi~~~g~---~~~~~~~~~~l~~~G~iv~~g  271 (347)
T 1jvb_A          238 SKGVDAVIDLNNS---EKTLSVYPKALAKQGKYVMVG  271 (347)
T ss_dssp             TSCEEEEEESCCC---HHHHTTGGGGEEEEEEEEECC
T ss_pred             CCCceEEEECCCC---HHHHHHHHHHHhcCCEEEEEC
Confidence            1589999876532   446677789999999988743

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=96.13  E-value=0.027  Score=47.58  Aligned_cols=94  Identities=7%  Similarity=0.059  Sum_probs=60.4

Q ss_pred             CEEEEEccc-ccHHH-HHHH-hhCCCCCEEEEEeCCch---hHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           72 KKTIEIGVF-TGYSL-LLTA-LTIPEDGQITAIDVNRE---TYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        72 ~~vLeiG~G-~G~~t-~~la-~~~~~~~~v~~iD~~~~---~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      .+||-+|+| .|..+ +.+| +.+. ..+|++++.+++   ..+.+++    .|.. .+.....+..+ +.++      .
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~G-a~~Vi~~~~~~~~~~~~~~~~~----lGa~-~v~~~~~~~~~-i~~~------~  240 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDKG-YENLYCLGRRDRPDPTIDIIEE----LDAT-YVDSRQTPVED-VPDV------Y  240 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTTC-CCEEEEEECCCSSCHHHHHHHH----TTCE-EEETTTSCGGG-HHHH------S
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHcC-CcEEEEEeCCcccHHHHHHHHH----cCCc-ccCCCccCHHH-HHHh------C
Confidence            899999974 36666 7777 6553 234999999988   7777764    3532 12111123333 3333      1


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      +.+|+||-...   ....++.++++|+++|.++.-.
T Consensus       241 gg~Dvvid~~g---~~~~~~~~~~~l~~~G~iv~~g  273 (357)
T 2b5w_A          241 EQMDFIYEATG---FPKHAIQSVQALAPNGVGALLG  273 (357)
T ss_dssp             CCEEEEEECSC---CHHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCEEEECCC---ChHHHHHHHHHHhcCCEEEEEe
Confidence            48999985432   2346777889999999988744

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=96.07  E-value=0.014  Score=49.00  Aligned_cols=100  Identities=12%  Similarity=0.144  Sum_probs=64.5

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           68 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        68 ~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ..+.++||-+|+  |.|..+..++...  +.+|++++.+++..+.+++    .|...-+.....+..+.+.+..    ..
T Consensus       164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~----~ga~~~~d~~~~~~~~~~~~~~----~~  233 (343)
T 2eih_A          164 VRPGDDVLVMAAGSGVSVAAIQIAKLF--GARVIATAGSEDKLRRAKA----LGADETVNYTHPDWPKEVRRLT----GG  233 (343)
T ss_dssp             CCTTCEEEECSTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCSEEEETTSTTHHHHHHHHT----TT
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHh----CC
Confidence            345679999998  5778888888875  4699999999988887764    2432111111112222333321    12


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ..+|+||-....    ..++.+.+.|+++|.++.-.
T Consensus       234 ~~~d~vi~~~g~----~~~~~~~~~l~~~G~~v~~g  265 (343)
T 2eih_A          234 KGADKVVDHTGA----LYFEGVIKATANGGRIAIAG  265 (343)
T ss_dssp             TCEEEEEESSCS----SSHHHHHHHEEEEEEEEESS
T ss_pred             CCceEEEECCCH----HHHHHHHHhhccCCEEEEEe
Confidence            479999876652    24566778999999888743

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=96.06  E-value=0.014  Score=49.24  Aligned_cols=99  Identities=16%  Similarity=0.146  Sum_probs=64.7

Q ss_pred             hcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           68 LVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        68 ~~~~~~vLeiG--~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ..+.++||-+|  .|.|..++.++...  +.+|++++.+++..+.+++.    |...-+.....+..+.+....     .
T Consensus       165 ~~~g~~VlV~Gg~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~l----Ga~~~~~~~~~~~~~~~~~~~-----~  233 (353)
T 4dup_A          165 LTEGESVLIHGGTSGIGTTAIQLARAF--GAEVYATAGSTGKCEACERL----GAKRGINYRSEDFAAVIKAET-----G  233 (353)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHH----TCSEEEETTTSCHHHHHHHHH-----S
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhc----CCCEEEeCCchHHHHHHHHHh-----C
Confidence            44567899995  34677778888765  46999999999988877653    532111111223333333331     3


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ..+|+||-.....    .+..+.+.|+++|.++.-.
T Consensus       234 ~g~Dvvid~~g~~----~~~~~~~~l~~~G~iv~~g  265 (353)
T 4dup_A          234 QGVDIILDMIGAA----YFERNIASLAKDGCLSIIA  265 (353)
T ss_dssp             SCEEEEEESCCGG----GHHHHHHTEEEEEEEEECC
T ss_pred             CCceEEEECCCHH----HHHHHHHHhccCCEEEEEE
Confidence            6899998665432    4567788999999988744

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=95.96  E-value=0.011  Score=49.59  Aligned_cols=100  Identities=13%  Similarity=0.133  Sum_probs=64.9

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe-cchhHHHHHHHhcccC
Q 026461           68 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSEN  144 (238)
Q Consensus        68 ~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~l~~~~~~~~~  144 (238)
                      ..+.++||-+|+  |.|..+..++...  +.+|++++.+++..+.+++   ..|...-+.+.. .+..+.+....     
T Consensus       153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~---~~g~~~~~d~~~~~~~~~~~~~~~-----  222 (345)
T 2j3h_A          153 PKEGETVYVSAASGAVGQLVGQLAKMM--GCYVVGSAGSKEKVDLLKT---KFGFDDAFNYKEESDLTAALKRCF-----  222 (345)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH---TSCCSEEEETTSCSCSHHHHHHHC-----
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH---HcCCceEEecCCHHHHHHHHHHHh-----
Confidence            445679999997  5677777788765  4699999999887776653   234321111111 12333344331     


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      .+.+|+||-....    ..++.+.++|+++|.+++-.
T Consensus       223 ~~~~d~vi~~~g~----~~~~~~~~~l~~~G~~v~~G  255 (345)
T 2j3h_A          223 PNGIDIYFENVGG----KMLDAVLVNMNMHGRIAVCG  255 (345)
T ss_dssp             TTCEEEEEESSCH----HHHHHHHTTEEEEEEEEECC
T ss_pred             CCCCcEEEECCCH----HHHHHHHHHHhcCCEEEEEc
Confidence            2579999876532    36778889999999988743

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=95.94  E-value=0.029  Score=46.34  Aligned_cols=103  Identities=11%  Similarity=0.108  Sum_probs=67.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCE-EEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      ...+++|+-||.|+.++.+..+-- ... |.++|+++.+++..+.|+.      ...++.+|+.++.+....+   .+.+
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~-~~~~v~a~E~d~~a~~ty~~N~~------~~~~~~~DI~~i~~~~i~~---~~~~   84 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGI-QVDRYIASEVCEDSITVGMVRHQ------GKIMYVGDVRSVTQKHIQE---WGPF   84 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTB-CEEEEEEECCCHHHHHHHHHHTT------TCEEEECCGGGCCHHHHHH---TCCC
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCC-ccceEEEEECCHHHHHHHHHhCC------CCceeCCChHHccHHHhcc---cCCc
Confidence            445899999999999988877421 122 6999999999888777642      2467788988754322111   2589


Q ss_pred             eEEEEcCCccc------------------hHHHHHHHHhccCCCe------EEEEeccc
Q 026461          149 DYAFVDADKDN------------------YCNYHERLMKLLKVGG------IAVYDNTL  183 (238)
Q Consensus       149 D~V~~d~~~~~------------------~~~~~~~~~~~L~~gG------~lv~~~~~  183 (238)
                      |+++...+++.                  +.++++. .+.++|..      +++++|+.
T Consensus        85 Dll~ggpPCQ~fS~ag~~r~g~~d~r~~L~~~~~ri-i~~~~P~~~~~~P~~~l~ENV~  142 (295)
T 2qrv_A           85 DLVIGGSPCNDLSIVNPARKGLYEGTGRLFFEFYRL-LHDARPKEGDDRPFFWLFENVV  142 (295)
T ss_dssp             SEEEECCCCGGGBTTCTTCCTTTSTTTTHHHHHHHH-HHHHSCCTTCCCCCEEEEEEES
T ss_pred             CEEEecCCCccccccCccccccccccchhHHHHHHH-HHHhCcccccCCccEEEEEcCc
Confidence            99987632111                  1233333 35567752      88999875

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.94  E-value=0.028  Score=47.30  Aligned_cols=93  Identities=15%  Similarity=0.207  Sum_probs=64.5

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           67 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ...+..+||-+|+|. |..++.+++..  +.+|++++.+++..+.+++    .|..   .++ .+...+          .
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~---~v~-~~~~~~----------~  232 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAM--GAEVSVFARNEHKKQDALS----MGVK---HFY-TDPKQC----------K  232 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHT--TCEEEEECSSSTTHHHHHH----TTCS---EEE-SSGGGC----------C
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHh----cCCC---eec-CCHHHH----------h
Confidence            455678999999874 77788888876  4699999999998887765    3542   122 332211          2


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      ..+|+||-.....   ..++.++++|+++|.++.-..
T Consensus       233 ~~~D~vid~~g~~---~~~~~~~~~l~~~G~iv~~G~  266 (348)
T 3two_A          233 EELDFIISTIPTH---YDLKDYLKLLTYNGDLALVGL  266 (348)
T ss_dssp             SCEEEEEECCCSC---CCHHHHHTTEEEEEEEEECCC
T ss_pred             cCCCEEEECCCcH---HHHHHHHHHHhcCCEEEEECC
Confidence            3899998654322   235667899999999987543

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=95.92  E-value=0.021  Score=48.18  Aligned_cols=101  Identities=13%  Similarity=0.128  Sum_probs=63.6

Q ss_pred             hhcCC--CEEEEEcc--cccHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhc
Q 026461           67 RLVNA--KKTIEIGV--FTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY  141 (238)
Q Consensus        67 ~~~~~--~~vLeiG~--G~G~~t~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~  141 (238)
                      ...+.  ++||-.|+  |.|..+..++...  +. +|++++.+++..+.+++.   .|....+.....+..+.+....  
T Consensus       155 ~~~~g~~~~vlI~GasggiG~~~~~~a~~~--Ga~~Vi~~~~~~~~~~~~~~~---~g~~~~~d~~~~~~~~~~~~~~--  227 (357)
T 2zb4_A          155 HITAGSNKTMVVSGAAGACGSVAGQIGHFL--GCSRVVGICGTHEKCILLTSE---LGFDAAINYKKDNVAEQLRESC--  227 (357)
T ss_dssp             CCCTTSCCEEEESSTTBHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHHT---SCCSEEEETTTSCHHHHHHHHC--
T ss_pred             CCCCCCccEEEEECCCcHHHHHHHHHHHHC--CCCeEEEEeCCHHHHHHHHHH---cCCceEEecCchHHHHHHHHhc--
Confidence            34556  89999997  4666677777765  45 999999998777666542   3432111111112222333321  


Q ss_pred             ccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          142 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                         .+.+|+||-...    ...++.++++|+++|.++.-.
T Consensus       228 ---~~~~d~vi~~~G----~~~~~~~~~~l~~~G~iv~~G  260 (357)
T 2zb4_A          228 ---PAGVDVYFDNVG----GNISDTVISQMNENSHIILCG  260 (357)
T ss_dssp             ---TTCEEEEEESCC----HHHHHHHHHTEEEEEEEEECC
T ss_pred             ---CCCCCEEEECCC----HHHHHHHHHHhccCcEEEEEC
Confidence               237999987654    256778889999999988743

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=95.90  E-value=0.016  Score=48.93  Aligned_cols=100  Identities=16%  Similarity=0.140  Sum_probs=62.7

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           68 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        68 ~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ..+.++||-+|+  |.|..+..++...  +.+|++++.+++..+.+++    .|...-+.....+..+.+....    ..
T Consensus       168 ~~~g~~vlV~GasggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~~~~d~~~~~~~~~~~~~~----~~  237 (351)
T 1yb5_A          168 VKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQ----NGAHEVFNHREVNYIDKIKKYV----GE  237 (351)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTSTTHHHHHHHHH----CT
T ss_pred             CCCcCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCChhHHHHHHH----cCCCEEEeCCCchHHHHHHHHc----CC
Confidence            445679999996  5677777777765  4699999999887776543    3432111111112222222221    13


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ..+|+||-....    ..+...+++|+++|.++.-.
T Consensus       238 ~~~D~vi~~~G~----~~~~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          238 KGIDIIIEMLAN----VNLSKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             TCEEEEEESCHH----HHHHHHHHHEEEEEEEEECC
T ss_pred             CCcEEEEECCCh----HHHHHHHHhccCCCEEEEEe
Confidence            479999866432    34667789999999988743

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=95.82  E-value=0.02  Score=48.57  Aligned_cols=95  Identities=17%  Similarity=0.126  Sum_probs=63.4

Q ss_pred             CCCEEEEEc-cc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec--chhHHHHHHHhcccCC
Q 026461           70 NAKKTIEIG-VF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYSENE  145 (238)
Q Consensus        70 ~~~~vLeiG-~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~l~~~~~~~~~~  145 (238)
                      +..+||-+| +| .|..++.+|+.+. ..+|++++.+++..+.+++    .|..   .++..  +..+.+..+     ..
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~-g~~Vi~~~~~~~~~~~~~~----lGad---~vi~~~~~~~~~v~~~-----~~  237 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRT-DLTVIATASRPETQEWVKS----LGAH---HVIDHSKPLAAEVAAL-----GL  237 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHC-CSEEEEECSSHHHHHHHHH----TTCS---EEECTTSCHHHHHHTT-----CS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHHHH----cCCC---EEEeCCCCHHHHHHHh-----cC
Confidence            456899998 44 5788888888643 5799999999988887764    4542   22221  222222222     24


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      +.+|+||-..   .....++.++++|+++|.++.-
T Consensus       238 ~g~Dvvid~~---g~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          238 GAPAFVFSTT---HTDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             CCEEEEEECS---CHHHHHHHHHHHSCTTCEEEEC
T ss_pred             CCceEEEECC---CchhhHHHHHHHhcCCCEEEEE
Confidence            6899888543   2345677888999999998864

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=95.81  E-value=0.039  Score=45.34  Aligned_cols=92  Identities=17%  Similarity=0.169  Sum_probs=63.5

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch-hHHHHHHHhcccC
Q 026461           68 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA-LSVLDQLLKYSEN  144 (238)
Q Consensus        68 ~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~l~~~~~~~~~  144 (238)
                      ..+.++||-+|+  |.|..+..++...  +.+|++++.+++..+.+++    .|..   .++..+. .+....+      
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~------  187 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLA----LGAE---EAATYAEVPERAKAW------  187 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHH----TTCS---EEEEGGGHHHHHHHT------
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh----cCCC---EEEECCcchhHHHHh------
Confidence            446789999997  4677888888876  4699999999988877754    3532   2232221 2333322      


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                       ..+|+||- ...    ..++.+.++|+++|.++.-
T Consensus       188 -~~~d~vid-~g~----~~~~~~~~~l~~~G~~v~~  217 (302)
T 1iz0_A          188 -GGLDLVLE-VRG----KEVEESLGLLAHGGRLVYI  217 (302)
T ss_dssp             -TSEEEEEE-CSC----TTHHHHHTTEEEEEEEEEC
T ss_pred             -cCceEEEE-CCH----HHHHHHHHhhccCCEEEEE
Confidence             68999987 543    3567788999999988864

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.72  E-value=0.071  Score=38.52  Aligned_cols=93  Identities=9%  Similarity=0.037  Sum_probs=59.1

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH--HHHHHHhcccCCCCe
Q 026461           72 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF  148 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~l~~~~~~~~~~~~f  148 (238)
                      .+|+-+|+  |..+..+++.+. .+..|+++|.+++.++.+++    .|    +.++.+|+.+  .+...     .....
T Consensus         8 ~~viIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~g----~~~i~gd~~~~~~l~~a-----~i~~a   72 (140)
T 3fwz_A            8 NHALLVGY--GRVGSLLGEKLLASDIPLVVIETSRTRVDELRE----RG----VRAVLGNAANEEIMQLA-----HLECA   72 (140)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----TT----CEEEESCTTSHHHHHHT-----TGGGC
T ss_pred             CCEEEECc--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----cC----CCEEECCCCCHHHHHhc-----CcccC
Confidence            47899998  556666555542 25689999999998877664    23    6778888764  34432     13578


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      |+|++..+.......+-...+.+.|+..++.
T Consensus        73 d~vi~~~~~~~~n~~~~~~a~~~~~~~~iia  103 (140)
T 3fwz_A           73 KWLILTIPNGYEAGEIVASARAKNPDIEIIA  103 (140)
T ss_dssp             SEEEECCSCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred             CEEEEECCChHHHHHHHHHHHHHCCCCeEEE
Confidence            9998765433222223334566777776664

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=95.72  E-value=0.043  Score=46.09  Aligned_cols=96  Identities=15%  Similarity=0.086  Sum_probs=63.1

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           68 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        68 ~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ..+..+||-+|+  |.|..++.++...  +.+|+++ .+++..+.+++    .|... +. ...+..+.+....    ..
T Consensus       148 ~~~g~~VlV~Ga~g~iG~~~~q~a~~~--Ga~Vi~~-~~~~~~~~~~~----lGa~~-i~-~~~~~~~~~~~~~----~~  214 (343)
T 3gaz_A          148 VQDGQTVLIQGGGGGVGHVAIQIALAR--GARVFAT-ARGSDLEYVRD----LGATP-ID-ASREPEDYAAEHT----AG  214 (343)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEE-ECHHHHHHHHH----HTSEE-EE-TTSCHHHHHHHHH----TT
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHC--CCEEEEE-eCHHHHHHHHH----cCCCE-ec-cCCCHHHHHHHHh----cC
Confidence            445679999993  4677888888876  4699999 88887776654    35432 32 2222333333332    13


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ..+|+||-....    ..+..+.++|+++|.++.-
T Consensus       215 ~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~  245 (343)
T 3gaz_A          215 QGFDLVYDTLGG----PVLDASFSAVKRFGHVVSC  245 (343)
T ss_dssp             SCEEEEEESSCT----HHHHHHHHHEEEEEEEEES
T ss_pred             CCceEEEECCCc----HHHHHHHHHHhcCCeEEEE
Confidence            589998865442    4667788999999998863

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=95.71  E-value=0.02  Score=48.50  Aligned_cols=99  Identities=20%  Similarity=0.136  Sum_probs=64.1

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh-HHHHHHHhcccC
Q 026461           67 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL-SVLDQLLKYSEN  144 (238)
Q Consensus        67 ~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~l~~~~~~~~~  144 (238)
                      ...+..+||-+|+| .|..++.+++..  +.+|++++.+++..+.+++.    |..   .++..... +....+      
T Consensus       176 ~~~~g~~VlV~GaG~vG~~~~qlak~~--Ga~Vi~~~~~~~~~~~~~~l----Ga~---~v~~~~~~~~~~~~~------  240 (360)
T 1piw_A          176 GCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMKM----GAD---HYIATLEEGDWGEKY------  240 (360)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHHH----TCS---EEEEGGGTSCHHHHS------
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHc----CCC---EEEcCcCchHHHHHh------
Confidence            44567899999985 366777788765  46899999999988887752    532   22322222 333333      


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      .+.+|+||-..... ....++.+.++|+++|.++.-.
T Consensus       241 ~~~~D~vid~~g~~-~~~~~~~~~~~l~~~G~iv~~g  276 (360)
T 1piw_A          241 FDTFDLIVVCASSL-TDIDFNIMPKAMKVGGRIVSIS  276 (360)
T ss_dssp             CSCEEEEEECCSCS-TTCCTTTGGGGEEEEEEEEECC
T ss_pred             hcCCCEEEECCCCC-cHHHHHHHHHHhcCCCEEEEec
Confidence            25899998654320 0123445678999999988643

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=95.68  E-value=0.047  Score=45.86  Aligned_cols=95  Identities=19%  Similarity=0.194  Sum_probs=62.8

Q ss_pred             CCCEEEEEc-cc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           70 NAKKTIEIG-VF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        70 ~~~~vLeiG-~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      +..+||-+| +| .|..++.++...  +.+|++++.+++..+.+++.    |...-+.. ..+..+.+...     ....
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~l----Ga~~vi~~-~~~~~~~~~~~-----~~~g  217 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAY--GLRVITTASRNETIEWTKKM----GADIVLNH-KESLLNQFKTQ-----GIEL  217 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEECCSHHHHHHHHHH----TCSEEECT-TSCHHHHHHHH-----TCCC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhc----CCcEEEEC-CccHHHHHHHh-----CCCC
Confidence            567899994 43 577778888865  46999999999888877763    53211111 11223333333     1468


Q ss_pred             eeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      +|+||-...   ....++.+.++|+++|.++.
T Consensus       218 ~Dvv~d~~g---~~~~~~~~~~~l~~~G~iv~  246 (346)
T 3fbg_A          218 VDYVFCTFN---TDMYYDDMIQLVKPRGHIAT  246 (346)
T ss_dssp             EEEEEESSC---HHHHHHHHHHHEEEEEEEEE
T ss_pred             ccEEEECCC---chHHHHHHHHHhccCCEEEE
Confidence            999986432   34566788899999999875

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=95.63  E-value=0.031  Score=47.14  Aligned_cols=100  Identities=8%  Similarity=0.047  Sum_probs=62.5

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           68 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        68 ~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ..+.++||-+|+  |.|..+..++...  +.+|++++.+++..+.+++.    |...-+.....+..+.+....    ..
T Consensus       160 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~----~~  229 (354)
T 2j8z_A          160 VQAGDYVLIHAGLSGVGTAAIQLTRMA--GAIPLVTAGSQKKLQMAEKL----GAAAGFNYKKEDFSEATLKFT----KG  229 (354)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHH----TCSEEEETTTSCHHHHHHHHT----TT
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHc----CCcEEEecCChHHHHHHHHHh----cC
Confidence            345678999983  5677777777765  46999999999888777432    432111111112222232221    12


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ..+|+||-.....    .+...+++|+++|.++.-.
T Consensus       230 ~~~d~vi~~~G~~----~~~~~~~~l~~~G~iv~~G  261 (354)
T 2j8z_A          230 AGVNLILDCIGGS----YWEKNVNCLALDGRWVLYG  261 (354)
T ss_dssp             SCEEEEEESSCGG----GHHHHHHHEEEEEEEEECC
T ss_pred             CCceEEEECCCch----HHHHHHHhccCCCEEEEEe
Confidence            4799998765432    4566778999999988743

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=95.51  E-value=0.027  Score=47.30  Aligned_cols=79  Identities=14%  Similarity=-0.031  Sum_probs=54.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEE-EEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHH-HHHhcccCCCC
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQI-TAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD-QLLKYSENEGS  147 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v-~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~-~~~~~~~~~~~  147 (238)
                      ++-+++|+.||.|+.+..+..+--....+ .++|+++.+++..+.|+..     .  ++.+|+.++.+ .+.     ...
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-----~--~~~~DI~~~~~~~i~-----~~~   76 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-----E--VQVKNLDSISIKQIE-----SLN   76 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-----C--CBCCCTTTCCHHHHH-----HTC
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-----C--cccCChhhcCHHHhc-----cCC
Confidence            34589999999999999888742101346 7999999999999988732     1  56677776532 221     137


Q ss_pred             eeEEEEcCCccch
Q 026461          148 FDYAFVDADKDNY  160 (238)
Q Consensus       148 fD~V~~d~~~~~~  160 (238)
                      +|+++...+++.+
T Consensus        77 ~Dil~ggpPCQ~f   89 (327)
T 3qv2_A           77 CNTWFMSPPCQPY   89 (327)
T ss_dssp             CCEEEECCCCTTC
T ss_pred             CCEEEecCCccCc
Confidence            9999977554333

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=95.45  E-value=0.014  Score=47.17  Aligned_cols=52  Identities=15%  Similarity=0.193  Sum_probs=39.9

Q ss_pred             EEEEecchhHHHHHHHhcccCCCCeeEEEEcCCcc-----------------chHHHHHHHHhccCCCeEEEEe
Q 026461          124 INFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----------------NYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       124 v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~-----------------~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      .+++++|+.+.+..+.     .++||+||+|.+-.                 .....++.+.++|+|+|.+++.
T Consensus         5 ~~l~~gD~~~~l~~l~-----~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~   73 (260)
T 1g60_A            5 NKIHQMNCFDFLDQVE-----NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (260)
T ss_dssp             SSEEECCHHHHHHHSC-----TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CeEEechHHHHHHhcc-----ccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence            4678999999888763     46899999997521                 1244567778999999998876

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=95.43  E-value=0.062  Score=44.75  Aligned_cols=94  Identities=12%  Similarity=-0.022  Sum_probs=64.8

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEE
Q 026461           73 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  152 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~  152 (238)
                      +|||+-||.|+.++-|-.+ . -.-+.++|+++.+++.-+.|+     .  -.++.+|+.++-..-      -...|+++
T Consensus         2 kvidLFsG~GG~~~G~~~a-G-~~~v~a~e~d~~a~~ty~~N~-----~--~~~~~~DI~~i~~~~------~~~~D~l~   66 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKA-G-FRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDE------FPKCDGII   66 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHT-T-CEEEEEEECCTTTHHHHHHHC-----C--SEEEESCGGGCCGGG------SCCCSEEE
T ss_pred             eEEEeCcCccHHHHHHHHC-C-CEEEEEEeCCHHHHHHHHHHC-----C--CCcccCChhhCCHhh------CCcccEEE
Confidence            6999999999999888764 1 235789999999999888874     1  256788987753221      36799998


Q ss_pred             EcCCccc-----------------hHHHHHHHHhccCCCeEEEEeccc
Q 026461          153 VDADKDN-----------------YCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       153 ~d~~~~~-----------------~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ...+++.                 +.++++. .+.++| -+++++|+.
T Consensus        67 ggpPCQ~fS~ag~~~g~~d~R~~L~~~~~r~-i~~~~P-k~~~~ENV~  112 (331)
T 3ubt_Y           67 GGPPSQSWSEGGSLRGIDDPRGKLFYEYIRI-LKQKKP-IFFLAENVK  112 (331)
T ss_dssp             CCCCGGGTEETTEECCTTCGGGHHHHHHHHH-HHHHCC-SEEEEEECC
T ss_pred             ecCCCCCcCCCCCccCCCCchhHHHHHHHHH-HhccCC-eEEEeeeec
Confidence            6533221                 1233332 356788 478888874

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=95.40  E-value=0.097  Score=44.41  Aligned_cols=98  Identities=10%  Similarity=0.076  Sum_probs=63.4

Q ss_pred             cCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           69 VNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        69 ~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      .+..+||-+|+  +.|..++.+++..  +.+|+++. +++..+.+++    .|...-+.....+..+.+..+.     .+
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~--Ga~Vi~~~-~~~~~~~~~~----lGa~~vi~~~~~~~~~~v~~~t-----~g  230 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLS--GYIPIATC-SPHNFDLAKS----RGAEEVFDYRAPNLAQTIRTYT-----KN  230 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEE-CGGGHHHHHH----TTCSEEEETTSTTHHHHHHHHT-----TT
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHC--CCEEEEEe-CHHHHHHHHH----cCCcEEEECCCchHHHHHHHHc-----cC
Confidence            46678999998  3788888899876  46888885 7887776654    4643222222233333444431     34


Q ss_pred             CeeEEEEcCCccchHHHHHHHHhcc-CCCeEEEEec
Q 026461          147 SFDYAFVDADKDNYCNYHERLMKLL-KVGGIAVYDN  181 (238)
Q Consensus       147 ~fD~V~~d~~~~~~~~~~~~~~~~L-~~gG~lv~~~  181 (238)
                      .+|+||-...   ....++.+++.| +++|.++.-.
T Consensus       231 ~~d~v~d~~g---~~~~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          231 NLRYALDCIT---NVESTTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             CCCEEEESSC---SHHHHHHHHHHSCTTCEEEEESS
T ss_pred             CccEEEECCC---chHHHHHHHHHhhcCCCEEEEEe
Confidence            6999985432   245567778888 6999988744

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.36  E-value=0.017  Score=48.42  Aligned_cols=54  Identities=19%  Similarity=0.229  Sum_probs=41.2

Q ss_pred             CcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCcc-----------------chHHHHHHHHhccCCCeEEEEe
Q 026461          122 HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----------------NYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       122 ~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~-----------------~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      .+.+++++|+.+.++.+.     .++||+||+|.+-.                 .+...+..+.++|+|||.+++.
T Consensus        13 ~~~~ii~gD~~~~l~~l~-----~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~   83 (323)
T 1boo_A           13 SNGSMYIGDSLELLESFP-----EESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD   83 (323)
T ss_dssp             SSEEEEESCHHHHGGGSC-----SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCceEEeCcHHHHHhhCC-----CCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEE
Confidence            457899999988776552     47899999997531                 2356677778999999988874

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.07  E-value=0.03  Score=46.81  Aligned_cols=54  Identities=13%  Similarity=0.108  Sum_probs=40.7

Q ss_pred             CcEEEE-ecchhHHHHHHHhcccCCCCeeEEEEcCCcc--------------chHHHHHHHHhccCCCeEEEEe
Q 026461          122 HKINFI-ESEALSVLDQLLKYSENEGSFDYAFVDADKD--------------NYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       122 ~~v~~~-~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~--------------~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ...+++ ++|+.+.+..+.     .++||+||+|.+-.              .....+..+.++|+|||.+++.
T Consensus        37 ~~~~l~i~gD~l~~L~~l~-----~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~  105 (319)
T 1eg2_A           37 TTRHVYDVCDCLDTLAKLP-----DDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF  105 (319)
T ss_dssp             CEEEEEEECCHHHHHHTSC-----TTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccceEEECCcHHHHHHhCc-----cCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            346788 999999887662     46899999997532              1245566777999999998875

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=95.05  E-value=0.028  Score=47.18  Aligned_cols=94  Identities=15%  Similarity=0.120  Sum_probs=61.7

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe---cchhHHHHHHHhcccCC
Q 026461           70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE---SEALSVLDQLLKYSENE  145 (238)
Q Consensus        70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~l~~~~~~~~~~  145 (238)
                      +..+||-+|+| .|..++.++.... ..+|++++.+++..+.+++. .     +  .++.   .+..+.+.++.     .
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~G-a~~Vi~~~~~~~~~~~~~~l-a-----~--~v~~~~~~~~~~~~~~~~-----~  229 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASG-AGPILVSDPNPYRLAFARPY-A-----D--RLVNPLEEDLLEVVRRVT-----G  229 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTT-CCSEEEECSCHHHHGGGTTT-C-----S--EEECTTTSCHHHHHHHHH-----S
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHh-H-----H--hccCcCccCHHHHHHHhc-----C
Confidence            66789999985 3667777887753 23899999998877766542 1     1  1222   22333333331     3


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ..+|+||-...   ....++..+++|+++|.++.-
T Consensus       230 ~g~D~vid~~g---~~~~~~~~~~~l~~~G~iv~~  261 (343)
T 2dq4_A          230 SGVEVLLEFSG---NEAAIHQGLMALIPGGEARIL  261 (343)
T ss_dssp             SCEEEEEECSC---CHHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCEEEECCC---CHHHHHHHHHHHhcCCEEEEE
Confidence            57999986543   245667788999999988864

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=95.05  E-value=0.024  Score=46.77  Aligned_cols=54  Identities=19%  Similarity=0.123  Sum_probs=38.9

Q ss_pred             CcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCcc---c--------------------hHHHHHHHHhccCCCeEEE
Q 026461          122 HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---N--------------------YCNYHERLMKLLKVGGIAV  178 (238)
Q Consensus       122 ~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~---~--------------------~~~~~~~~~~~L~~gG~lv  178 (238)
                      .+++++++|+.+.++.+.     .++||+|+.|.+-.   .                    +...+..+.++|+|||.++
T Consensus        20 ~~~~i~~gD~~~~l~~l~-----~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~   94 (297)
T 2zig_A           20 GVHRLHVGDAREVLASFP-----EASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLV   94 (297)
T ss_dssp             -CEEEEESCHHHHHTTSC-----TTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             cCCEEEECcHHHHHhhCC-----CCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence            357899999999776552     47999999996421   1                    1234567779999999887


Q ss_pred             Ee
Q 026461          179 YD  180 (238)
Q Consensus       179 ~~  180 (238)
                      +.
T Consensus        95 i~   96 (297)
T 2zig_A           95 IV   96 (297)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=94.87  E-value=0.46  Score=33.49  Aligned_cols=94  Identities=14%  Similarity=0.122  Sum_probs=55.6

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH--HHHHHHhcccCCCC
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGS  147 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~l~~~~~~~~~~~~  147 (238)
                      ..+|+-+|+  |..+..++..+. .+.+|+.+|.+++.++..++.   .+    +.++.+|..+  .+...     ....
T Consensus         4 ~m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~---~~----~~~~~~d~~~~~~l~~~-----~~~~   69 (140)
T 1lss_A            4 GMYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---ID----ALVINGDCTKIKTLEDA-----GIED   69 (140)
T ss_dssp             -CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---CS----SEEEESCTTSHHHHHHT-----TTTT
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh---cC----cEEEEcCCCCHHHHHHc-----Cccc
Confidence            357888887  677766666542 246899999998876554432   12    4566666543  22221     1357


Q ss_pred             eeEEEEcCCccchHHHHHHHHhccCCCeEEE
Q 026461          148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAV  178 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv  178 (238)
                      .|+|++..+.......+..+.+.+.++-+++
T Consensus        70 ~d~vi~~~~~~~~~~~~~~~~~~~~~~~ii~  100 (140)
T 1lss_A           70 ADMYIAVTGKEEVNLMSSLLAKSYGINKTIA  100 (140)
T ss_dssp             CSEEEECCSCHHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCEEEEeeCCchHHHHHHHHHHHcCCCEEEE
Confidence            9999987543333333444556677764444

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=94.86  E-value=0.083  Score=45.97  Aligned_cols=99  Identities=14%  Similarity=0.035  Sum_probs=63.8

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch--------------
Q 026461           68 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA--------------  131 (238)
Q Consensus        68 ~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~--------------  131 (238)
                      ..+.++||-+|+  |.|..++.++...  +.++++++.+++..+.+++    .|...-+.....+.              
T Consensus       218 ~~~g~~VlV~GasG~iG~~a~qla~~~--Ga~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~~~~~~~~  291 (447)
T 4a0s_A          218 MKQGDIVLIWGASGGLGSYAIQFVKNG--GGIPVAVVSSAQKEAAVRA----LGCDLVINRAELGITDDIADDPRRVVET  291 (447)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCCCEEEHHHHTCCTTGGGCHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCCEEEecccccccccccccccccchh
Confidence            455678999996  4677778888875  4789999998888777754    45432222111111              


Q ss_pred             ----hHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          132 ----LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       132 ----~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                          .+.+.+..     ...+|+||-....    ..++...++|+++|.++.-.
T Consensus       292 ~~~~~~~v~~~~-----g~g~Dvvid~~G~----~~~~~~~~~l~~~G~iv~~G  336 (447)
T 4a0s_A          292 GRKLAKLVVEKA-----GREPDIVFEHTGR----VTFGLSVIVARRGGTVVTCG  336 (447)
T ss_dssp             HHHHHHHHHHHH-----SSCCSEEEECSCH----HHHHHHHHHSCTTCEEEESC
T ss_pred             hhHHHHHHHHHh-----CCCceEEEECCCc----hHHHHHHHHHhcCCEEEEEe
Confidence                12222221     3579999865442    35677889999999988743

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=94.79  E-value=0.073  Score=46.55  Aligned_cols=100  Identities=13%  Similarity=0.071  Sum_probs=64.4

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch--------------
Q 026461           68 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA--------------  131 (238)
Q Consensus        68 ~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~--------------  131 (238)
                      ..+..+||-+|+  |.|..++.++...  +.++++++.+++..+.+++    .|...-+.....|.              
T Consensus       226 ~~~g~~VlV~GasG~vG~~avqlak~~--Ga~vi~~~~~~~~~~~~~~----lGa~~vi~~~~~d~~~~~~~~~~~~~~~  299 (456)
T 3krt_A          226 MKQGDNVLIWGASGGLGSYATQFALAG--GANPICVVSSPQKAEICRA----MGAEAIIDRNAEGYRFWKDENTQDPKEW  299 (456)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCCEEEETTTTTCCSEEETTEECHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHc--CCeEEEEECCHHHHHHHHh----hCCcEEEecCcCcccccccccccchHHH
Confidence            445678999996  4677888888876  4789999998888887765    35422111111111              


Q ss_pred             ---hHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          132 ---LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       132 ---~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                         .+.+.++.    ....+|+||-....    ..+..++++|+++|.++.-.
T Consensus       300 ~~~~~~i~~~t----~g~g~Dvvid~~G~----~~~~~~~~~l~~~G~iv~~G  344 (456)
T 3krt_A          300 KRFGKRIRELT----GGEDIDIVFEHPGR----ETFGASVFVTRKGGTITTCA  344 (456)
T ss_dssp             HHHHHHHHHHH----TSCCEEEEEECSCH----HHHHHHHHHEEEEEEEEESC
T ss_pred             HHHHHHHHHHh----CCCCCcEEEEcCCc----hhHHHHHHHhhCCcEEEEEe
Confidence               02222221    13589998854432    56777889999999998743

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=94.73  E-value=0.17  Score=42.81  Aligned_cols=94  Identities=20%  Similarity=0.188  Sum_probs=59.7

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      +..+||-+|+| .|..++.++...  +.+|++++.+++..+.+++   ..|..   .++...-.+.+...      .+.+
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~---~lGa~---~v~~~~~~~~~~~~------~~~~  252 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAF--GSKVTVISTSPSKKEEALK---NFGAD---SFLVSRDQEQMQAA------AGTL  252 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCGGGHHHHHH---TSCCS---EEEETTCHHHHHHT------TTCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH---hcCCc---eEEeccCHHHHHHh------hCCC
Confidence            66789999975 356667777765  4699999999988776653   23532   22222222333333      3589


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      |+||-......   .++.+++.|+++|.++.-
T Consensus       253 D~vid~~g~~~---~~~~~~~~l~~~G~iv~~  281 (366)
T 1yqd_A          253 DGIIDTVSAVH---PLLPLFGLLKSHGKLILV  281 (366)
T ss_dssp             EEEEECCSSCC---CSHHHHHHEEEEEEEEEC
T ss_pred             CEEEECCCcHH---HHHHHHHHHhcCCEEEEE
Confidence            99986543321   234556788999988864

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=94.53  E-value=0.14  Score=45.15  Aligned_cols=77  Identities=6%  Similarity=-0.137  Sum_probs=53.3

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHH-------------HH
Q 026461           72 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD-------------QL  138 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~-------------~~  138 (238)
                      -+++|+.||.|+.+.-+..+-  ...|.++|+++.+++.-+.|+..   .....++.+|+.++..             .+
T Consensus        89 ~~viDLFaG~GGlslG~~~aG--~~~v~avE~d~~A~~ty~~N~~~---~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i  163 (482)
T 3me5_A           89 FRFIDLFAGIGGIRRGFESIG--GQCVFTSEWNKHAVRTYKANHYC---DPATHHFNEDIRDITLSHQEGVSDEAAAEHI  163 (482)
T ss_dssp             EEEEEESCTTSHHHHHHHTTT--EEEEEEECCCHHHHHHHHHHSCC---CTTTCEEESCTHHHHCTTCTTSCHHHHHHHH
T ss_pred             ceEEEecCCccHHHHHHHHCC--CEEEEEEeCCHHHHHHHHHhccc---CCCcceeccchhhhhhccccccchhhHHhhh
Confidence            489999999999999887641  23489999999988888877521   1234567788877641             11


Q ss_pred             HhcccCCCCeeEEEEcCC
Q 026461          139 LKYSENEGSFDYAFVDAD  156 (238)
Q Consensus       139 ~~~~~~~~~fD~V~~d~~  156 (238)
                      ...   .+.+|+|+...+
T Consensus       164 ~~~---~~~~Dvl~gGpP  178 (482)
T 3me5_A          164 RQH---IPEHDVLLAGFP  178 (482)
T ss_dssp             HHH---SCCCSEEEEECC
T ss_pred             hhc---CCCCCEEEecCC
Confidence            111   367999987643

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.33  E-value=0.28  Score=35.10  Aligned_cols=71  Identities=13%  Similarity=0.137  Sum_probs=48.2

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhcccCCCC
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGS  147 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~~~~~~~  147 (238)
                      .++|+-+|+  |..+..+++.+. .+.+|+.+|.+++.++.+++.    +    +.++.+|..+.  +...     ....
T Consensus         6 ~~~v~I~G~--G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~----~----~~~~~gd~~~~~~l~~~-----~~~~   70 (141)
T 3llv_A            6 RYEYIVIGS--EAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE----G----FDAVIADPTDESFYRSL-----DLEG   70 (141)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT----T----CEEEECCTTCHHHHHHS-----CCTT
T ss_pred             CCEEEEECC--CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC----C----CcEEECCCCCHHHHHhC-----Cccc
Confidence            357899998  566766666553 246899999999887766542    2    57788887653  3332     1357


Q ss_pred             eeEEEEcCC
Q 026461          148 FDYAFVDAD  156 (238)
Q Consensus       148 fD~V~~d~~  156 (238)
                      +|+|++..+
T Consensus        71 ~d~vi~~~~   79 (141)
T 3llv_A           71 VSAVLITGS   79 (141)
T ss_dssp             CSEEEECCS
T ss_pred             CCEEEEecC
Confidence            899988654

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=94.27  E-value=0.13  Score=43.42  Aligned_cols=95  Identities=19%  Similarity=0.249  Sum_probs=60.4

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      +..+||-+|+| .|..++.+++..  +.+|++++.+++..+.+++   ..|...   ++..+-.+.+.+.      .+.+
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~--Ga~Vi~~~~~~~~~~~~~~---~lGa~~---vi~~~~~~~~~~~------~~g~  245 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSNKKREEALQ---DLGADD---YVIGSDQAKMSEL------ADSL  245 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSTTHHHHHHT---TSCCSC---EEETTCHHHHHHS------TTTE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH---HcCCce---eeccccHHHHHHh------cCCC
Confidence            66799999975 456667777765  4699999999887776652   335432   2222212333333      3579


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      |+||-.....   ..++..+++|+++|.++.-.
T Consensus       246 D~vid~~g~~---~~~~~~~~~l~~~G~iv~~G  275 (357)
T 2cf5_A          246 DYVIDTVPVH---HALEPYLSLLKLDGKLILMG  275 (357)
T ss_dssp             EEEEECCCSC---CCSHHHHTTEEEEEEEEECS
T ss_pred             CEEEECCCCh---HHHHHHHHHhccCCEEEEeC
Confidence            9998654322   12345678999999988743

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=94.19  E-value=0.23  Score=41.37  Aligned_cols=67  Identities=13%  Similarity=0.120  Sum_probs=45.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc---hhHHHHHHHHHHcCCCC---cEEEEecchhHHHHHH
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR---ETYEIGLPIIKKAGVDH---KINFIESEALSVLDQL  138 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~---~~~~~a~~~~~~~~~~~---~v~~~~~d~~~~l~~~  138 (238)
                      ..++..|||--||+|..+......   +-+.+++|+++   ..++.+++++...+.-+   +.+ +...+.+++..+
T Consensus       240 ~~~~~~vlDpF~GsGtt~~aa~~~---~r~~ig~e~~~~~~~~~~~~~~Rl~~~~~~~~~~~~~-~~~~~~~~~~~~  312 (319)
T 1eg2_A          240 SHPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFLQDDGLIDKARSYE-IVEGAANFGAAL  312 (319)
T ss_dssp             SCTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC---------CCEE-EEECGGGTHHHH
T ss_pred             CCCCCEEEecCCCCCHHHHHHHHc---CCcEEEEECCccHHHHHHHHHHHHHHccCCcccceee-ecchHHHHHHHH
Confidence            346679999999999988877765   35899999999   99999999988766321   223 233455555554

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=94.16  E-value=0.072  Score=44.24  Aligned_cols=93  Identities=9%  Similarity=0.018  Sum_probs=58.3

Q ss_pred             EEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeE
Q 026461           73 KTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  150 (238)
Q Consensus        73 ~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~  150 (238)
                      +||-+|+  |.|..++.++....  .+|++++.+++..+.+++    .|...-+.....+ .+.+..+     ..+.+|+
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~G--a~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~-~~~~~~~-----~~~~~d~  219 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKRG--YTVEASTGKAAEHDYLRV----LGAKEVLAREDVM-AERIRPL-----DKQRWAA  219 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCTTCHHHHHH----TTCSEEEECC----------C-----CSCCEEE
T ss_pred             eEEEecCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH----cCCcEEEecCCcH-HHHHHHh-----cCCcccE
Confidence            7999996  57778888888764  689999999888887764    3542211111111 1122222     1357999


Q ss_pred             EEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          151 AFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       151 V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ||-....    ..+..++++|+++|.++.-.
T Consensus       220 vid~~g~----~~~~~~~~~l~~~G~~v~~G  246 (328)
T 1xa0_A          220 AVDPVGG----RTLATVLSRMRYGGAVAVSG  246 (328)
T ss_dssp             EEECSTT----TTHHHHHHTEEEEEEEEECS
T ss_pred             EEECCcH----HHHHHHHHhhccCCEEEEEe
Confidence            8865432    24567789999999988744

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=94.14  E-value=0.15  Score=42.32  Aligned_cols=88  Identities=15%  Similarity=0.190  Sum_probs=57.5

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-CC--EEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH-HHHHHHhcccCCCC
Q 026461           72 KKTIEIGVFTGYSLLLTALTIPE-DG--QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-VLDQLLKYSENEGS  147 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~~-~~--~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~l~~~~~~~~~~~~  147 (238)
                      .+|.-||+  |..+..++..+.. +.  +|+++|.+++.++.+.+    .|...  . ...+..+ .          ...
T Consensus        34 ~kI~IIG~--G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~----~G~~~--~-~~~~~~~~~----------~~~   94 (314)
T 3ggo_A           34 QNVLIVGV--GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGIID--E-GTTSIAKVE----------DFS   94 (314)
T ss_dssp             SEEEEESC--SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSCS--E-EESCTTGGG----------GGC
T ss_pred             CEEEEEee--CHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH----CCCcc--h-hcCCHHHHh----------hcc
Confidence            68999997  4555444443321 23  89999999987776653    34321  1 1223322 2          246


Q ss_pred             eeEEEEcCCccchHHHHHHHHhccCCCeEEE
Q 026461          148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAV  178 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv  178 (238)
                      .|+||+.-+.......++.+.+.++++.+|+
T Consensus        95 aDvVilavp~~~~~~vl~~l~~~l~~~~iv~  125 (314)
T 3ggo_A           95 PDFVMLSSPVRTFREIAKKLSYILSEDATVT  125 (314)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHHSCTTCEEE
T ss_pred             CCEEEEeCCHHHHHHHHHHHhhccCCCcEEE
Confidence            7999998777777888888888898876554

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=94.06  E-value=0.22  Score=42.10  Aligned_cols=97  Identities=13%  Similarity=0.132  Sum_probs=58.2

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      ++++|+-+|+| .|..+..++..+.  .+|+.+|.+++..+.+++....     .+.....+..++.+.+       ..+
T Consensus       166 ~~~~VlViGaGgvG~~aa~~a~~~G--a~V~v~dr~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------~~~  231 (361)
T 1pjc_A          166 KPGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAV-------AEA  231 (361)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHH-------HTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHhhCc-----eeEeeeCCHHHHHHHH-------cCC
Confidence            56899999985 3444455555553  5999999999888877765422     2333333333333333       478


Q ss_pred             eEEEEcCCccc--hHH-HHHHHHhccCCCeEEEEe
Q 026461          149 DYAFVDADKDN--YCN-YHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       149 D~V~~d~~~~~--~~~-~~~~~~~~L~~gG~lv~~  180 (238)
                      |+|+.......  .+. ..+...+.+++||+++--
T Consensus       232 DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv  266 (361)
T 1pjc_A          232 DLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDV  266 (361)
T ss_dssp             SEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEET
T ss_pred             CEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEE
Confidence            99976432211  111 134456788999977653

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=94.05  E-value=0.18  Score=42.47  Aligned_cols=106  Identities=13%  Similarity=0.076  Sum_probs=59.7

Q ss_pred             hcCC-CEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe---cchhHHHHHHHhc
Q 026461           68 LVNA-KKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE---SEALSVLDQLLKY  141 (238)
Q Consensus        68 ~~~~-~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~l~~~~~~  141 (238)
                      ..+. .+||-+|+  +.|..++.+|+..  +.+++++..+++..+..++.++..|...-+....   .+..+.+.++..+
T Consensus       164 ~~~g~~~VlV~Ga~G~vG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~  241 (364)
T 1gu7_A          164 LTPGKDWFIQNGGTSAVGKYASQIGKLL--NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQ  241 (364)
T ss_dssp             CCTTTCEEEESCTTSHHHHHHHHHHHHH--TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHH
T ss_pred             cCCCCcEEEECCCCcHHHHHHHHHHHHC--CCEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhc
Confidence            3455 78999986  4677788888875  4688888766554222223334456432121111   2222333332100


Q ss_pred             ccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          142 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                        ....+|+||-....   .... ..+++|+++|.++.-.
T Consensus       242 --~~~g~Dvvid~~G~---~~~~-~~~~~l~~~G~~v~~g  275 (364)
T 1gu7_A          242 --SGGEAKLALNCVGG---KSST-GIARKLNNNGLMLTYG  275 (364)
T ss_dssp             --HTCCEEEEEESSCH---HHHH-HHHHTSCTTCEEEECC
T ss_pred             --cCCCceEEEECCCc---hhHH-HHHHHhccCCEEEEec
Confidence              03589999854432   2333 5679999999988744

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=94.03  E-value=0.12  Score=43.76  Aligned_cols=93  Identities=15%  Similarity=0.106  Sum_probs=58.9

Q ss_pred             CCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc---hhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           71 AKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR---ETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        71 ~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~---~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      .++||-+|+| .|..++.++...  +.+|++++.++   +..+.+++    .|.. .+. .. +..+.+...      .+
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~~~----~ga~-~v~-~~-~~~~~~~~~------~~  245 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTY--GLEVWMANRREPTEVEQTVIEE----TKTN-YYN-SS-NGYDKLKDS------VG  245 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHH--TCEEEEEESSCCCHHHHHHHHH----HTCE-EEE-CT-TCSHHHHHH------HC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCccchHHHHHHHH----hCCc-eec-hH-HHHHHHHHh------CC
Confidence            7899999984 355566666654  45999999998   77666654    3532 121 11 222222221      26


Q ss_pred             CeeEEEEcCCccchHHHH-HHHHhccCCCeEEEEec
Q 026461          147 SFDYAFVDADKDNYCNYH-ERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       147 ~fD~V~~d~~~~~~~~~~-~~~~~~L~~gG~lv~~~  181 (238)
                      .+|+||-.....   ..+ +.+.+.|+++|.++.-.
T Consensus       246 ~~d~vid~~g~~---~~~~~~~~~~l~~~G~iv~~g  278 (366)
T 2cdc_A          246 KFDVIIDATGAD---VNILGNVIPLLGRNGVLGLFG  278 (366)
T ss_dssp             CEEEEEECCCCC---THHHHHHGGGEEEEEEEEECS
T ss_pred             CCCEEEECCCCh---HHHHHHHHHHHhcCCEEEEEe
Confidence            899998765432   245 77789999999888744

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=93.99  E-value=0.6  Score=36.54  Aligned_cols=94  Identities=11%  Similarity=0.038  Sum_probs=60.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH--HHHHHHhcccCCCC
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGS  147 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~l~~~~~~~~~~~~  147 (238)
                      ..++|+-+|+  |..+..+++.+...+.|+.+|.+++.++.+.     .    .+.++.+|+.+  .+...     .-..
T Consensus         8 ~~~~viI~G~--G~~G~~la~~L~~~g~v~vid~~~~~~~~~~-----~----~~~~i~gd~~~~~~l~~a-----~i~~   71 (234)
T 2aef_A            8 KSRHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKKVLR-----S----GANFVHGDPTRVSDLEKA-----NVRG   71 (234)
T ss_dssp             --CEEEEESC--CHHHHHHHHHSTTSEEEEEESCGGGHHHHHH-----T----TCEEEESCTTCHHHHHHT-----TCTT
T ss_pred             CCCEEEEECC--ChHHHHHHHHHHhCCeEEEEECCHHHHHHHh-----c----CCeEEEcCCCCHHHHHhc-----Ccch
Confidence            3467999987  7888888888864434999999998766554     1    26888998864  33332     1468


Q ss_pred             eeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      .|.|++..+............+.+.++..+++
T Consensus        72 ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia  103 (234)
T 2aef_A           72 ARAVIVDLESDSETIHCILGIRKIDESVRIIA  103 (234)
T ss_dssp             CSEEEECCSCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred             hcEEEEcCCCcHHHHHHHHHHHHHCCCCeEEE
Confidence            89998865433223333444566777755555

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=93.97  E-value=0.2  Score=42.75  Aligned_cols=99  Identities=17%  Similarity=0.118  Sum_probs=57.4

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           69 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        69 ~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      .++++|+-+|+| .|..+..++..+  +.+|+++|.+++..+.+++.+   +.  .+.....+..+..+.+       ..
T Consensus       166 l~g~~V~ViG~G~iG~~~a~~a~~~--Ga~V~~~d~~~~~l~~~~~~~---g~--~~~~~~~~~~~l~~~l-------~~  231 (377)
T 2vhw_A          166 VEPADVVVIGAGTAGYNAARIANGM--GATVTVLDINIDKLRQLDAEF---CG--RIHTRYSSAYELEGAV-------KR  231 (377)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHT---TT--SSEEEECCHHHHHHHH-------HH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhc---CC--eeEeccCCHHHHHHHH-------cC
Confidence            457899999985 344444455554  359999999998877766533   32  1222222222222222       46


Q ss_pred             eeEEEEcCCccc--hHH-HHHHHHhccCCCeEEEEec
Q 026461          148 FDYAFVDADKDN--YCN-YHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       148 fD~V~~d~~~~~--~~~-~~~~~~~~L~~gG~lv~~~  181 (238)
                      .|+|+.......  .+. +.+...+.+++||+|+--.
T Consensus       232 aDvVi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          232 ADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             CSEEEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred             CCEEEECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence            899987532211  111 1345668889999877533

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.90  E-value=0.26  Score=37.06  Aligned_cols=95  Identities=11%  Similarity=0.094  Sum_probs=55.7

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCC--CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH--HHHHHHhcccCCC
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPE--DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEG  146 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~--~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~l~~~~~~~~~~~  146 (238)
                      ..+|+-+|+  |..+..+++.+..  +.+|+++|.+++.++.+++    .|    +.++.+|..+  .+...    ....
T Consensus        39 ~~~v~IiG~--G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~----~g----~~~~~gd~~~~~~l~~~----~~~~  104 (183)
T 3c85_A           39 HAQVLILGM--GRIGTGAYDELRARYGKISLGIEIREEAAQQHRS----EG----RNVISGDATDPDFWERI----LDTG  104 (183)
T ss_dssp             TCSEEEECC--SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH----TT----CCEEECCTTCHHHHHTB----CSCC
T ss_pred             CCcEEEECC--CHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH----CC----CCEEEcCCCCHHHHHhc----cCCC
Confidence            457999987  6666666655432  3579999999987766543    23    4566677643  22221    0135


Q ss_pred             CeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      .+|+|++..+.......+-...+.+.|++.+++
T Consensus       105 ~ad~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~  137 (183)
T 3c85_A          105 HVKLVLLAMPHHQGNQTALEQLQRRNYKGQIAA  137 (183)
T ss_dssp             CCCEEEECCSSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHHCCCCEEEE
Confidence            789999854322222222233455666666665

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=93.88  E-value=1  Score=39.13  Aligned_cols=102  Identities=13%  Similarity=0.195  Sum_probs=61.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHH------------HHHcCCCCcEEEEecchhHHHH
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI------------IKKAGVDHKINFIESEALSVLD  136 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~------------~~~~~~~~~v~~~~~d~~~~l~  136 (238)
                      ..-.+|.-||+  |+.+..+|..+..+.+|+++|++++.++..++.            +.. + ..++++. .|..+.  
T Consensus        34 ~~~mkIaVIGl--G~mG~~lA~~La~G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~-~-~~~l~~t-td~~ea--  106 (432)
T 3pid_A           34 SEFMKITISGT--GYVGLSNGVLIAQNHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAE-K-PLNFRAT-TDKHDA--  106 (432)
T ss_dssp             -CCCEEEEECC--SHHHHHHHHHHHTTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHH-S-CCCEEEE-SCHHHH--
T ss_pred             cCCCEEEEECc--CHHHHHHHHHHHcCCeEEEEecCHHHhhHHhccCCccccccHHHHHhh-c-cCCeEEE-cCHHHH--
Confidence            34457888887  666666665554357899999999988876542            111 1 1133332 232222  


Q ss_pred             HHHhcccCCCCeeEEEEcCCcc-----------chHHHHHHHHhccCCCeEEEEeccccCc
Q 026461          137 QLLKYSENEGSFDYAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYDNTLWGG  186 (238)
Q Consensus       137 ~~~~~~~~~~~fD~V~~d~~~~-----------~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (238)
                       +       ..-|+||+.-+..           ......+.+.+ |++|.++|.......|
T Consensus       107 -~-------~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pg  158 (432)
T 3pid_A          107 -Y-------RNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVG  158 (432)
T ss_dssp             -H-------TTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTT
T ss_pred             -H-------hCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChH
Confidence             1       4679998864322           23455566777 8998888876555443

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=93.87  E-value=0.56  Score=34.06  Aligned_cols=97  Identities=13%  Similarity=0.059  Sum_probs=59.1

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCc-hhHHHHHHHHHHcCCCCcEEEEecchhH--HHHHHHhcccCCC
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNR-ETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEG  146 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~l~~~~~~~~~~~  146 (238)
                      .++|+-+|+  |..+..+++.+. .+.+|+.+|.++ +.++...+..     ...+.++.+|+.+  .+...     .-.
T Consensus         3 ~~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~-----~~~~~~i~gd~~~~~~l~~a-----~i~   70 (153)
T 1id1_A            3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL-----GDNADVIPGDSNDSSVLKKA-----GID   70 (153)
T ss_dssp             CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH-----CTTCEEEESCTTSHHHHHHH-----TTT
T ss_pred             CCcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh-----cCCCeEEEcCCCCHHHHHHc-----Chh
Confidence            356888886  777777776653 246899999974 5444444332     1247888998764  33332     146


Q ss_pred             CeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ..|+|++..+............+.+.|...++.
T Consensus        71 ~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~ii~  103 (153)
T 1id1_A           71 RCRAILALSDNDADNAFVVLSAKDMSSDVKTVL  103 (153)
T ss_dssp             TCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEE
T ss_pred             hCCEEEEecCChHHHHHHHHHHHHHCCCCEEEE
Confidence            889998865433333344444566666665554

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=93.83  E-value=0.2  Score=41.96  Aligned_cols=96  Identities=9%  Similarity=-0.032  Sum_probs=58.0

Q ss_pred             CEEEEE-ccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           72 KKTIEI-GVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        72 ~~vLei-G~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      +.||-. |+| .|..++.++...  +.+|++++.+++..+.+++    .|...-+.....+..+.+.....    ...+|
T Consensus       166 ~~vli~gg~g~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~v~~~~~----~~g~D  235 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLAKEE--GFRPIVTVRRDEQIALLKD----IGAAHVLNEKAPDFEATLREVMK----AEQPR  235 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESCGGGHHHHHH----HTCSEEEETTSTTHHHHHHHHHH----HHCCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCCEEEECCcHHHHHHHHHHhc----CCCCc
Confidence            456554 332 566666777765  4699999999998888765    35321122112233333333321    24799


Q ss_pred             EEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          150 YAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       150 ~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      +||-....    ..+..++++|+++|.++.-.
T Consensus       236 ~vid~~g~----~~~~~~~~~l~~~G~iv~~G  263 (349)
T 3pi7_A          236 IFLDAVTG----PLASAIFNAMPKRARWIIYG  263 (349)
T ss_dssp             EEEESSCH----HHHHHHHHHSCTTCEEEECC
T ss_pred             EEEECCCC----hhHHHHHhhhcCCCEEEEEe
Confidence            99865432    23466789999999988754

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=93.82  E-value=0.63  Score=31.65  Aligned_cols=80  Identities=14%  Similarity=0.018  Sum_probs=50.2

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCC-C-CEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH--HHHHHHhcccCCC
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPE-D-GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEG  146 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~-~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~l~~~~~~~~~~~  146 (238)
                      .++|+-+|+  |..+..++..+.. + .+|+.+|.+++..+...    .    ..+.+...|..+  .+...      -.
T Consensus         5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~----~~~~~~~~d~~~~~~~~~~------~~   68 (118)
T 3ic5_A            5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R----MGVATKQVDAKDEAGLAKA------LG   68 (118)
T ss_dssp             CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T----TTCEEEECCTTCHHHHHHH------TT
T ss_pred             cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h----CCCcEEEecCCCHHHHHHH------Hc
Confidence            357999998  6666666655422 3 58999999987766554    1    235667666654  23333      35


Q ss_pred             CeeEEEEcCCccchHHHHHH
Q 026461          147 SFDYAFVDADKDNYCNYHER  166 (238)
Q Consensus       147 ~fD~V~~d~~~~~~~~~~~~  166 (238)
                      .+|+|+...+........+.
T Consensus        69 ~~d~vi~~~~~~~~~~~~~~   88 (118)
T 3ic5_A           69 GFDAVISAAPFFLTPIIAKA   88 (118)
T ss_dssp             TCSEEEECSCGGGHHHHHHH
T ss_pred             CCCEEEECCCchhhHHHHHH
Confidence            89999987654443333333

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=93.82  E-value=0.31  Score=41.30  Aligned_cols=99  Identities=16%  Similarity=0.172  Sum_probs=56.7

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           69 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        69 ~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      .++++|+-+|+| .|..+..++..+  +.+|+++|.+++..+.+.+.+   +.  .+.....+..+....+       ..
T Consensus       164 l~~~~V~ViGaG~iG~~~a~~l~~~--Ga~V~~~d~~~~~~~~~~~~~---g~--~~~~~~~~~~~l~~~~-------~~  229 (369)
T 2eez_A          164 VAPASVVILGGGTVGTNAAKIALGM--GAQVTILDVNHKRLQYLDDVF---GG--RVITLTATEANIKKSV-------QH  229 (369)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHT---TT--SEEEEECCHHHHHHHH-------HH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHhc---Cc--eEEEecCCHHHHHHHH-------hC
Confidence            356899999984 233334444444  469999999998776665432   32  2333333332332222       47


Q ss_pred             eeEEEEcCCccc--hHH-HHHHHHhccCCCeEEEEec
Q 026461          148 FDYAFVDADKDN--YCN-YHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       148 fD~V~~d~~~~~--~~~-~~~~~~~~L~~gG~lv~~~  181 (238)
                      .|+|+.......  .+. ..+...+.+++||+++.-.
T Consensus       230 ~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~  266 (369)
T 2eez_A          230 ADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA  266 (369)
T ss_dssp             CSEEEECCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred             CCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence            899987654221  111 1355678889999877543

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=93.64  E-value=0.12  Score=43.27  Aligned_cols=97  Identities=13%  Similarity=0.095  Sum_probs=56.6

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           68 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        68 ~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ..+..+||-+|+  +.|..++.+++... ..+|++++ +++..+.++     .|...-+. ...+..+.+..+     ..
T Consensus       140 ~~~g~~VlV~Ga~G~vG~~a~qla~~~g-~~~V~~~~-~~~~~~~~~-----~ga~~~~~-~~~~~~~~~~~~-----~~  206 (349)
T 4a27_A          140 LREGMSVLVHSAGGGVGQAVAQLCSTVP-NVTVFGTA-STFKHEAIK-----DSVTHLFD-RNADYVQEVKRI-----SA  206 (349)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHTTST-TCEEEEEE-CGGGHHHHG-----GGSSEEEE-TTSCHHHHHHHH-----CT
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHcC-CcEEEEeC-CHHHHHHHH-----cCCcEEEc-CCccHHHHHHHh-----cC
Confidence            446679999997  35677777887654 56899988 555544443     34422122 222333333333     14


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      +.+|+||-.....    .+..++++|+++|.+++-.
T Consensus       207 ~g~Dvv~d~~g~~----~~~~~~~~l~~~G~~v~~G  238 (349)
T 4a27_A          207 EGVDIVLDCLCGD----NTGKGLSLLKPLGTYILYG  238 (349)
T ss_dssp             TCEEEEEEECC-----------CTTEEEEEEEEEEC
T ss_pred             CCceEEEECCCch----hHHHHHHHhhcCCEEEEEC
Confidence            6899998554322    2356789999999988643

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=93.62  E-value=0.21  Score=42.35  Aligned_cols=97  Identities=20%  Similarity=0.171  Sum_probs=59.9

Q ss_pred             hcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           68 LVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        68 ~~~~~~vLeiG--~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ..+..+||-+|  .|.|..++.++...  +.+|++++ +++..+.++    ..|..   .++..+..+..+.+..    .
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~--Ga~Vi~~~-~~~~~~~~~----~lGa~---~v~~~~~~~~~~~~~~----~  246 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAW--DAHVTAVC-SQDASELVR----KLGAD---DVIDYKSGSVEEQLKS----L  246 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEE-CGGGHHHHH----HTTCS---EEEETTSSCHHHHHHT----S
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhC--CCEEEEEe-ChHHHHHHH----HcCCC---EEEECCchHHHHHHhh----c
Confidence            34567999998  34677788888876  46899998 666666554    34542   2222221223333321    2


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ..+|+||-.....  ...+...+++|+++|.++.-
T Consensus       247 ~g~D~vid~~g~~--~~~~~~~~~~l~~~G~iv~~  279 (375)
T 2vn8_A          247 KPFDFILDNVGGS--TETWAPDFLKKWSGATYVTL  279 (375)
T ss_dssp             CCBSEEEESSCTT--HHHHGGGGBCSSSCCEEEES
T ss_pred             CCCCEEEECCCCh--hhhhHHHHHhhcCCcEEEEe
Confidence            5799998654322  13346667899999998863

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=93.54  E-value=0.1  Score=43.10  Aligned_cols=88  Identities=14%  Similarity=0.127  Sum_probs=57.7

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ..+..+||-+|+| .|..++.+++...  .+|++++ +++..+.+++.    |..   .++. | .   +.+      ..
T Consensus       140 ~~~g~~VlV~GaG~vG~~a~qlak~~G--a~Vi~~~-~~~~~~~~~~l----Ga~---~v~~-d-~---~~v------~~  198 (315)
T 3goh_A          140 LTKQREVLIVGFGAVNNLLTQMLNNAG--YVVDLVS-ASLSQALAAKR----GVR---HLYR-E-P---SQV------TQ  198 (315)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHHT--CEEEEEC-SSCCHHHHHHH----TEE---EEES-S-G---GGC------CS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEE-ChhhHHHHHHc----CCC---EEEc-C-H---HHh------CC
Confidence            3456799999986 4777888888764  5999999 99988888653    531   2232 3 1   111      36


Q ss_pred             CeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      .+|+||-.....    .+..++++|+++|.++.-
T Consensus       199 g~Dvv~d~~g~~----~~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          199 KYFAIFDAVNSQ----NAAALVPSLKANGHIICI  228 (315)
T ss_dssp             CEEEEECC-----------TTGGGEEEEEEEEEE
T ss_pred             CccEEEECCCch----hHHHHHHHhcCCCEEEEE
Confidence            899988433221    224567999999988764

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=93.46  E-value=0.11  Score=43.29  Aligned_cols=62  Identities=6%  Similarity=-0.070  Sum_probs=46.0

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV  134 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (238)
                      ..++..|||-.||+|..+......   +-+++|+|+++..++.+++++...+..  ...+..|+.++
T Consensus       250 ~~~~~~VlDpF~GsGtt~~aa~~~---gr~~ig~e~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~i  311 (323)
T 1boo_A          250 TEPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFLDNNIS--EEKITDIYNRI  311 (323)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGSCSCSC--HHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHhcccc--hHHHHHHHHHH
Confidence            356779999999999987776653   458999999999999999988766542  33344444433

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=93.43  E-value=0.24  Score=41.66  Aligned_cols=99  Identities=13%  Similarity=0.091  Sum_probs=60.4

Q ss_pred             HhhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecc--hhHHHHHHHhcc
Q 026461           66 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE--ALSVLDQLLKYS  142 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d--~~~~l~~~~~~~  142 (238)
                      ....+..+||-+|+| .|..++.+|+... +.+|+++|.+++..+.+++    .|..   .++...  ..+.+.++.   
T Consensus       182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~v~~~~---  250 (359)
T 1h2b_A          182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAER----LGAD---HVVDARRDPVKQVMELT---  250 (359)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHHH----TTCS---EEEETTSCHHHHHHHHT---
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCC---EEEeccchHHHHHHHHh---
Confidence            344567799999875 4555667777662 3589999999988887764    3542   222211  223333331   


Q ss_pred             cCCCCeeEEEEcCCccchHH--HHHHHHhccCCCeEEEEec
Q 026461          143 ENEGSFDYAFVDADKDNYCN--YHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       143 ~~~~~fD~V~~d~~~~~~~~--~~~~~~~~L~~gG~lv~~~  181 (238)
                       ....+|+||-....   ..  .+...+++  ++|.++.-.
T Consensus       251 -~g~g~Dvvid~~G~---~~~~~~~~~~~~--~~G~~v~~g  285 (359)
T 1h2b_A          251 -RGRGVNVAMDFVGS---QATVDYTPYLLG--RMGRLIIVG  285 (359)
T ss_dssp             -TTCCEEEEEESSCC---HHHHHHGGGGEE--EEEEEEECC
T ss_pred             -CCCCCcEEEECCCC---chHHHHHHHhhc--CCCEEEEEe
Confidence             12379999855432   22  55566666  899888743

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=93.36  E-value=0.8  Score=36.24  Aligned_cols=83  Identities=11%  Similarity=0.097  Sum_probs=53.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhc-ccC
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKY-SEN  144 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~-~~~  144 (238)
                      +.++||-.| |+|..+..+++.+.  .+.+|+.++.+++..+...+.+...+  .++.++.+|..+.  +..+.++ ...
T Consensus         3 ~~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   79 (276)
T 1wma_A            3 GIHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKE   79 (276)
T ss_dssp             CCCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHh
Confidence            456777777 56777777776653  25799999999887777766666554  4578888887542  2221110 000


Q ss_pred             CCCeeEEEEcC
Q 026461          145 EGSFDYAFVDA  155 (238)
Q Consensus       145 ~~~fD~V~~d~  155 (238)
                      .+.+|+|+..+
T Consensus        80 ~g~id~li~~A   90 (276)
T 1wma_A           80 YGGLDVLVNNA   90 (276)
T ss_dssp             HSSEEEEEECC
T ss_pred             cCCCCEEEECC
Confidence            25899999765

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=93.32  E-value=1.5  Score=38.24  Aligned_cols=100  Identities=17%  Similarity=0.179  Sum_probs=60.3

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHc---CC---------CCcEEEEecchhHHHHHH
Q 026461           72 KKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKA---GV---------DHKINFIESEALSVLDQL  138 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~---~~---------~~~v~~~~~d~~~~l~~~  138 (238)
                      .+|.-||+  |+.+..++..+.. +.+|+++|.+++.++..++.....   ++         ..++++. .|..+.    
T Consensus         3 mkI~VIG~--G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t-~d~~ea----   75 (450)
T 3gg2_A            3 LDIAVVGI--GYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFG-TEIEQA----   75 (450)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEE-SCHHHH----
T ss_pred             CEEEEECc--CHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEE-CCHHHH----
Confidence            46888887  6666666655432 468999999998887765421000   00         1224332 232222    


Q ss_pred             HhcccCCCCeeEEEEcCCcc----------chHHHHHHHHhccCCCeEEEEecccc
Q 026461          139 LKYSENEGSFDYAFVDADKD----------NYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       139 ~~~~~~~~~fD~V~~d~~~~----------~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                            -...|+||+.-+..          .....++.+.+.|++|.+++......
T Consensus        76 ------~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~  125 (450)
T 3gg2_A           76 ------VPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVP  125 (450)
T ss_dssp             ------GGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCC
T ss_pred             ------HhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCC
Confidence                  14679999875433          45667777888899887777655443

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=93.31  E-value=1.5  Score=36.28  Aligned_cols=89  Identities=12%  Similarity=0.009  Sum_probs=56.2

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-C-CEEEEEeCCch---hHHHHHHHHHHcCCCCcEEEEec-chhHHHHHHHhcccCC
Q 026461           72 KKTIEIGVFTGYSLLLTALTIPE-D-GQITAIDVNRE---TYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENE  145 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~~-~-~~v~~iD~~~~---~~~~a~~~~~~~~~~~~v~~~~~-d~~~~l~~~~~~~~~~  145 (238)
                      .+|.-||+  |..+..++..+.. + .+|++.|.+++   ..+...+.+...|.       .. +..+.          -
T Consensus        25 m~IgvIG~--G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-------~~~s~~e~----------~   85 (317)
T 4ezb_A           25 TTIAFIGF--GEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV-------EPLDDVAG----------I   85 (317)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC-------EEESSGGG----------G
T ss_pred             CeEEEECc--cHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC-------CCCCHHHH----------H
Confidence            57889987  6666666655533 3 58999999973   22222333333342       22 33333          1


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ..-|+||+.-+.....+.++.+.+.+++|.+++-
T Consensus        86 ~~aDvVi~avp~~~~~~~~~~i~~~l~~~~ivv~  119 (317)
T 4ezb_A           86 ACADVVLSLVVGAATKAVAASAAPHLSDEAVFID  119 (317)
T ss_dssp             GGCSEEEECCCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             hcCCEEEEecCCHHHHHHHHHHHhhcCCCCEEEE
Confidence            4569999987666666677888888998776664

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=93.31  E-value=0.077  Score=43.96  Aligned_cols=91  Identities=11%  Similarity=0.114  Sum_probs=60.8

Q ss_pred             EEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeE
Q 026461           73 KTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  150 (238)
Q Consensus        73 ~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~  150 (238)
                      +||-+|+  +.|..++.+++...  .+|++++.+++..+.+++    .|...   ++.....+....+     ..+.+|+
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~G--a~Vi~~~~~~~~~~~~~~----lGa~~---vi~~~~~~~~~~~-----~~~~~d~  214 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLG--YQVAAVSGRESTHGYLKS----LGANR---ILSRDEFAESRPL-----EKQLWAG  214 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCGGGHHHHHH----HTCSE---EEEGGGSSCCCSS-----CCCCEEE
T ss_pred             eEEEECCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----cCCCE---EEecCCHHHHHhh-----cCCCccE
Confidence            4999986  57888888998764  699999999999888875    35321   2211111111111     1357998


Q ss_pred             EEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          151 AFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       151 V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ||-...    ...++.++++|+++|.++.-.
T Consensus       215 v~d~~g----~~~~~~~~~~l~~~G~iv~~G  241 (324)
T 3nx4_A          215 AIDTVG----DKVLAKVLAQMNYGGCVAACG  241 (324)
T ss_dssp             EEESSC----HHHHHHHHHTEEEEEEEEECC
T ss_pred             EEECCC----cHHHHHHHHHHhcCCEEEEEe
Confidence            774332    237788889999999988743

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=93.22  E-value=0.52  Score=40.10  Aligned_cols=95  Identities=11%  Similarity=0.022  Sum_probs=67.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCC-cEEEEecchhHHHHHHHhcccCCCCe
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      ..++||.++.+.|..+.+++..     .++.+.-|--.....+.|+..+++.. .+++...  .+   .+      ...|
T Consensus        38 ~~~~~~~~~d~~gal~~~~~~~-----~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~--~~---~~------~~~~  101 (375)
T 4dcm_A           38 IRGPVLILNDAFGALSCALAEH-----KPYSIGDSYISELATRENLRLNGIDESSVKFLDS--TA---DY------PQQP  101 (375)
T ss_dssp             CCSCEEEECCSSSHHHHHTGGG-----CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET--TS---CC------CSSC
T ss_pred             CCCCEEEECCCCCHHHHhhccC-----CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc--cc---cc------ccCC
Confidence            4467999999999999999853     34555444445557788999988864 3776643  11   11      5789


Q ss_pred             eEEEEcCCc--cchHHHHHHHHhccCCCeEEEEe
Q 026461          149 DYAFVDADK--DNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       149 D~V~~d~~~--~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      |+|++.-++  ......+..+...|++|+.|++.
T Consensus       102 ~~v~~~lpk~~~~l~~~L~~l~~~l~~~~~i~~~  135 (375)
T 4dcm_A          102 GVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAG  135 (375)
T ss_dssp             SEEEEECCSCHHHHHHHHHHHHTTCCTTSEEEEE
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence            999987654  33456777888899999988764

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=92.97  E-value=0.43  Score=40.33  Aligned_cols=95  Identities=7%  Similarity=0.000  Sum_probs=59.9

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHH------cCCCCcEEEEecchhHHHHHHHhccc
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKK------AGVDHKINFIESEALSVLDQLLKYSE  143 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~------~~~~~~v~~~~~d~~~~l~~~~~~~~  143 (238)
                      ..+|.-||+  |..+..++..+.. +.+|+.++.+++.++..++.-..      ..+..++.+. .|..+.   +     
T Consensus        29 ~mkI~VIGa--G~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t-~d~~ea---~-----   97 (356)
T 3k96_A           29 KHPIAILGA--GSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAY-CDLKAS---L-----   97 (356)
T ss_dssp             CSCEEEECC--SHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEE-SCHHHH---H-----
T ss_pred             CCeEEEECc--cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEE-CCHHHH---H-----
Confidence            457999998  5555555554432 35799999998877766553110      1111233332 233222   2     


Q ss_pred             CCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEE
Q 026461          144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV  178 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv  178 (238)
                        ...|+|++.-+.......++.+.+.++++.+++
T Consensus        98 --~~aDvVilaVp~~~~~~vl~~i~~~l~~~~ivv  130 (356)
T 3k96_A           98 --EGVTDILIVVPSFAFHEVITRMKPLIDAKTRIA  130 (356)
T ss_dssp             --TTCCEEEECCCHHHHHHHHHHHGGGCCTTCEEE
T ss_pred             --hcCCEEEECCCHHHHHHHHHHHHHhcCCCCEEE
Confidence              567999998766667788888888898877655

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=92.97  E-value=1.3  Score=35.25  Aligned_cols=83  Identities=10%  Similarity=0.018  Sum_probs=55.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhcccCCC
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEG  146 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~~~~~~  146 (238)
                      ..+++|-.|++ |..+..+++.+. .+.+|+.++.+++..+...+.+...+...++.++.+|..+.  +..+.++   .+
T Consensus         9 ~~k~~lVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~---~g   84 (267)
T 3t4x_A            9 KGKTALVTGST-AGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEK---YP   84 (267)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHH---CC
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHh---cC
Confidence            45778877754 555566655542 25799999999988877777776655445678888887542  2333222   46


Q ss_pred             CeeEEEEcCC
Q 026461          147 SFDYAFVDAD  156 (238)
Q Consensus       147 ~fD~V~~d~~  156 (238)
                      ..|+++..+.
T Consensus        85 ~id~lv~nAg   94 (267)
T 3t4x_A           85 KVDILINNLG   94 (267)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            8999998753

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=92.74  E-value=0.85  Score=35.23  Aligned_cols=93  Identities=17%  Similarity=0.075  Sum_probs=58.9

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH--HHHHHHhcccCCCCee
Q 026461           73 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFD  149 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~l~~~~~~~~~~~~fD  149 (238)
                      +|+-+|+  |..+..+++.+. .+..|+.+|.+++.++...+.   .    .+.++.+|+.+  .+...     .-...|
T Consensus         2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~---~----~~~~i~gd~~~~~~l~~a-----~i~~ad   67 (218)
T 3l4b_C            2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK---L----KATIIHGDGSHKEILRDA-----EVSKND   67 (218)
T ss_dssp             CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH---S----SSEEEESCTTSHHHHHHH-----TCCTTC
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH---c----CCeEEEcCCCCHHHHHhc-----CcccCC
Confidence            4777886  777777776652 256899999999887765432   1    25788888765  33332     146889


Q ss_pred             EEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          150 YAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       150 ~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      +|++..+.......+....+.+.+...++.
T Consensus        68 ~vi~~~~~d~~n~~~~~~a~~~~~~~~iia   97 (218)
T 3l4b_C           68 VVVILTPRDEVNLFIAQLVMKDFGVKRVVS   97 (218)
T ss_dssp             EEEECCSCHHHHHHHHHHHHHTSCCCEEEE
T ss_pred             EEEEecCCcHHHHHHHHHHHHHcCCCeEEE
Confidence            998865443333444444555555555554

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=92.73  E-value=0.35  Score=41.75  Aligned_cols=94  Identities=12%  Similarity=0.048  Sum_probs=61.6

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH--HHHHHHhcccCCCC
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGS  147 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~l~~~~~~~~~~~~  147 (238)
                      ..+|+-||+  |..+..+++.+. .+..|+.||.+++.++.+++    .|    +.++.||+.+  .+...     .-..
T Consensus         4 ~~~viIiG~--Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~----~g----~~vi~GDat~~~~L~~a-----gi~~   68 (413)
T 3l9w_A            4 GMRVIIAGF--GRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK----FG----MKVFYGDATRMDLLESA-----GAAK   68 (413)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH----TT----CCCEESCTTCHHHHHHT-----TTTT
T ss_pred             CCeEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh----CC----CeEEEcCCCCHHHHHhc-----CCCc
Confidence            356888887  666666665542 25689999999999887764    23    5678888865  44443     2468


Q ss_pred             eeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      .|+|++..+.......+-...+.+.|+..+++
T Consensus        69 A~~viv~~~~~~~n~~i~~~ar~~~p~~~Iia  100 (413)
T 3l9w_A           69 AEVLINAIDDPQTNLQLTEMVKEHFPHLQIIA  100 (413)
T ss_dssp             CSEEEECCSSHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             cCEEEECCCChHHHHHHHHHHHHhCCCCeEEE
Confidence            89998865433333334444567778765555

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=92.66  E-value=1.1  Score=35.58  Aligned_cols=79  Identities=16%  Similarity=0.141  Sum_probs=51.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HH----HHHhc
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LD----QLLKY  141 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~----~~~~~  141 (238)
                      ...+++|-.|++ |..+..+++.+ ..+.+|+.++.+++.++...+.+   +  .++.++.+|..+.  +.    ...+.
T Consensus         6 l~gk~~lVTGas-~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (255)
T 4eso_A            6 YQGKKAIVIGGT-HGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF---G--PRVHALRSDIADLNEIAVLGAAAGQT   79 (255)
T ss_dssp             TTTCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---G--GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CcceEEEccCCCHHHHHHHHHHHHHH
Confidence            356788888865 44556655554 23579999999988776665544   2  4688888887542  11    11111


Q ss_pred             ccCCCCeeEEEEcCC
Q 026461          142 SENEGSFDYAFVDAD  156 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~  156 (238)
                         .+.+|+++..+.
T Consensus        80 ---~g~id~lv~nAg   91 (255)
T 4eso_A           80 ---LGAIDLLHINAG   91 (255)
T ss_dssp             ---HSSEEEEEECCC
T ss_pred             ---hCCCCEEEECCC
Confidence               368999998753

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=92.66  E-value=2.3  Score=33.70  Aligned_cols=79  Identities=9%  Similarity=0.102  Sum_probs=52.7

Q ss_pred             CCCEEEEEccc----ccHH-HHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH------HHHHH
Q 026461           70 NAKKTIEIGVF----TGYS-LLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQL  138 (238)
Q Consensus        70 ~~~~vLeiG~G----~G~~-t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~~~  138 (238)
                      +.|.+|--|++    .|.. +..|++   .+.+|+.++.+++..+.+.+.+...+- .++.++.+|..+      .+...
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~---~Ga~Vvi~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~   80 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQ---LGAKLVFTYRKERSRKELEKLLEQLNQ-PEAHLYQIDVQSDEEVINGFEQI   80 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHH---TTCEEEEEESSGGGHHHHHHHHGGGTC-SSCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcCC-CcEEEEEccCCCHHHHHHHHHHH
Confidence            67889998853    3332 233443   267999999999998888888877653 357888888643      22222


Q ss_pred             HhcccCCCCeeEEEEcC
Q 026461          139 LKYSENEGSFDYAFVDA  155 (238)
Q Consensus       139 ~~~~~~~~~fD~V~~d~  155 (238)
                      .+.   -+..|+++.++
T Consensus        81 ~~~---~G~iD~lvnnA   94 (256)
T 4fs3_A           81 GKD---VGNIDGVYHSI   94 (256)
T ss_dssp             HHH---HCCCSEEEECC
T ss_pred             HHH---hCCCCEEEecc
Confidence            222   47899998764

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=92.66  E-value=2.4  Score=33.93  Aligned_cols=81  Identities=19%  Similarity=0.144  Sum_probs=51.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCC------------chhHHHHHHHHHHcCCCCcEEEEecchhHH--
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVN------------RETYEIGLPIIKKAGVDHKINFIESEALSV--  134 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~------------~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--  134 (238)
                      .++++|-.|++. ..+..+++.+. .+.+|+.+|.+            .+.++.+...+...+  .++.++.+|..+.  
T Consensus         9 ~gk~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~   85 (287)
T 3pxx_A            9 QDKVVLVTGGAR-GQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRAA   85 (287)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHH
T ss_pred             CCCEEEEeCCCC-hHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHHH
Confidence            567888888654 45555555442 25799999987            555666666665554  4688898887542  


Q ss_pred             ----HHHHHhcccCCCCeeEEEEcCC
Q 026461          135 ----LDQLLKYSENEGSFDYAFVDAD  156 (238)
Q Consensus       135 ----l~~~~~~~~~~~~fD~V~~d~~  156 (238)
                          +....+.   .+.+|+++..+.
T Consensus        86 v~~~~~~~~~~---~g~id~lv~nAg  108 (287)
T 3pxx_A           86 VSRELANAVAE---FGKLDVVVANAG  108 (287)
T ss_dssp             HHHHHHHHHHH---HSCCCEEEECCC
T ss_pred             HHHHHHHHHHH---cCCCCEEEECCC
Confidence                2222211   368999998753

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=92.60  E-value=1.7  Score=35.31  Aligned_cols=81  Identities=15%  Similarity=0.136  Sum_probs=51.0

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH------HHHHHhc
Q 026461           70 NAKKTIEIGVFT-GYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKY  141 (238)
Q Consensus        70 ~~~~vLeiG~G~-G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~~~  141 (238)
                      ..+++|-.|++. ...+..+++.+ ..+.+|+.++.++...+.+.+.....+   ++.++.+|..+.      +....+.
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLG---VKLTVPCDVSDAESVDNMFKVLAEE  105 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHT---CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            567899998753 23444444433 126789999999877766666655544   357788886542      2222211


Q ss_pred             ccCCCCeeEEEEcCC
Q 026461          142 SENEGSFDYAFVDAD  156 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~  156 (238)
                         .+.+|+++..+.
T Consensus       106 ---~g~iD~lVnnAG  117 (296)
T 3k31_A          106 ---WGSLDFVVHAVA  117 (296)
T ss_dssp             ---HSCCSEEEECCC
T ss_pred             ---cCCCCEEEECCC
Confidence               368999998764

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=92.58  E-value=0.32  Score=39.29  Aligned_cols=89  Identities=17%  Similarity=0.222  Sum_probs=55.0

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-CC--EEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC-C
Q 026461           72 KKTIEIGVFTGYSLLLTALTIPE-DG--QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG-S  147 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~~-~~--~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~-~  147 (238)
                      ++|.-||+  |..+..++..+.. +.  +|+++|.+++..+.++    ..|...  .. ..+..+.          .. .
T Consensus         2 ~~I~iIG~--G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~----~~g~~~--~~-~~~~~~~----------~~~~   62 (281)
T 2g5c_A            2 QNVLIVGV--GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV----DLGIID--EG-TTSIAKV----------EDFS   62 (281)
T ss_dssp             CEEEEESC--SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH----HTTSCS--EE-ESCGGGG----------GGTC
T ss_pred             cEEEEEec--CHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH----HCCCcc--cc-cCCHHHH----------hcCC
Confidence            36788887  5555555444321 22  7999999988776654    334321  11 1232222          24 7


Q ss_pred             eeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      .|+|++.-+.......+..+.+.++++.+++.
T Consensus        63 aDvVilavp~~~~~~v~~~l~~~l~~~~iv~~   94 (281)
T 2g5c_A           63 PDFVMLSSPVRTFREIAKKLSYILSEDATVTD   94 (281)
T ss_dssp             CSEEEECSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             CCEEEEcCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence            89999987666667777777788888875553

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=92.57  E-value=3.1  Score=32.88  Aligned_cols=83  Identities=5%  Similarity=-0.027  Sum_probs=51.3

Q ss_pred             CCCEEEEEccccc-HHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH------HHHHHHhc
Q 026461           70 NAKKTIEIGVFTG-YSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY  141 (238)
Q Consensus        70 ~~~~vLeiG~G~G-~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~~~~~~  141 (238)
                      ..+++|-.|++.| +.+..+++.+ ..+.+|+.++.++...+.+.+.....+- .++.++.+|..+      .+....+.
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASIKEQ   84 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHHHHH
Confidence            4678999986522 1333333333 1267899999988777777766665542 368888888653      22222221


Q ss_pred             ccCCCCeeEEEEcCC
Q 026461          142 SENEGSFDYAFVDAD  156 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~  156 (238)
                         .+.+|+++..+.
T Consensus        85 ---~g~id~li~~Ag   96 (266)
T 3oig_A           85 ---VGVIHGIAHCIA   96 (266)
T ss_dssp             ---HSCCCEEEECCC
T ss_pred             ---hCCeeEEEEccc
Confidence               368999987753

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=92.29  E-value=1.5  Score=36.32  Aligned_cols=93  Identities=13%  Similarity=0.065  Sum_probs=61.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhcccCCCCe
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSF  148 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~~~~~~~f  148 (238)
                      .++++-+|+  |..+..+++.+...+.|+.+|.+++.++ +++        ..+.++.+|+.+.  +...     .-...
T Consensus       115 ~~~viI~G~--G~~g~~l~~~L~~~g~v~vid~~~~~~~-~~~--------~~~~~i~gd~~~~~~L~~a-----~i~~a  178 (336)
T 1lnq_A          115 SRHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKK-VLR--------SGANFVHGDPTRVSDLEKA-----NVRGA  178 (336)
T ss_dssp             -CEEEEESC--CHHHHHHHTTGGGSCEEEEESCGGGHHH-HHH--------TTCEEEESCTTSHHHHHHT-----CSTTE
T ss_pred             cCCEEEECC--cHHHHHHHHHHHhCCcEEEEeCChhhhh-HHh--------CCcEEEEeCCCCHHHHHhc-----Chhhc
Confidence            457998887  7888888887754344999999999887 543        2378899998753  3332     24688


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      |.|++..+.....-......+.+.|...++.
T Consensus       179 ~~vi~~~~~d~~n~~~~~~ar~~~~~~~iia  209 (336)
T 1lnq_A          179 RAVIVDLESDSETIHCILGIRKIDESVRIIA  209 (336)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHTTCTTSEEEE
T ss_pred             cEEEEcCCccHHHHHHHHHHHHHCCCCeEEE
Confidence            9998865332222233334566777755555

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=92.24  E-value=0.46  Score=34.65  Aligned_cols=98  Identities=12%  Similarity=0.026  Sum_probs=55.2

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH--HHHHHHhcccC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSEN  144 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~l~~~~~~~~~  144 (238)
                      .....+|+-+|+  |..+..++..+. .+.+|+.+|.+++.++.++.   ..    .+.++.+|..+  .+...     .
T Consensus        16 ~~~~~~v~IiG~--G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~---~~----g~~~~~~d~~~~~~l~~~-----~   81 (155)
T 2g1u_A           16 KQKSKYIVIFGC--GRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS---EF----SGFTVVGDAAEFETLKEC-----G   81 (155)
T ss_dssp             -CCCCEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT---TC----CSEEEESCTTSHHHHHTT-----T
T ss_pred             ccCCCcEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh---cC----CCcEEEecCCCHHHHHHc-----C
Confidence            345678999997  666665555442 24689999999887654331   11    24556666543  22211     1


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ...+|+|++.............+.+.+.+...++.
T Consensus        82 ~~~ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~  116 (155)
T 2g1u_A           82 MEKADMVFAFTNDDSTNFFISMNARYMFNVENVIA  116 (155)
T ss_dssp             GGGCSEEEECSSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred             cccCCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEE
Confidence            24789999875443333333334444455555554

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=92.19  E-value=2.7  Score=33.55  Aligned_cols=83  Identities=11%  Similarity=0.022  Sum_probs=55.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHH----HHhcc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQ----LLKYS  142 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~----~~~~~  142 (238)
                      ..+++|-.|+ +|..+..+++.+. .+.+|+.++.++...+...+.+...+...++.++.+|..+.  +..    ..+. 
T Consensus        31 ~~k~vlVTGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~-  108 (279)
T 1xg5_A           31 RDRLALVTGA-SGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ-  108 (279)
T ss_dssp             TTCEEEEEST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHh-
Confidence            5678888885 5666666665542 25789999999888777777777666556688888887542  222    2111 


Q ss_pred             cCCCCeeEEEEcCC
Q 026461          143 ENEGSFDYAFVDAD  156 (238)
Q Consensus       143 ~~~~~fD~V~~d~~  156 (238)
                        .+.+|+|+..+.
T Consensus       109 --~g~iD~vi~~Ag  120 (279)
T 1xg5_A          109 --HSGVDICINNAG  120 (279)
T ss_dssp             --HCCCSEEEECCC
T ss_pred             --CCCCCEEEECCC
Confidence              257999997653

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=92.11  E-value=0.41  Score=40.40  Aligned_cols=81  Identities=15%  Similarity=0.028  Sum_probs=51.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH--HHHHHHhcccCCCC
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGS  147 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~l~~~~~~~~~~~~  147 (238)
                      +..+|+-+||  |..+..+++.+.....|+..|.+.+.++.+++         .+..+..|+.+  .+..+      -..
T Consensus        15 ~~mkilvlGa--G~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~---------~~~~~~~d~~d~~~l~~~------~~~   77 (365)
T 3abi_A           15 RHMKVLILGA--GNIGRAIAWDLKDEFDVYIGDVNNENLEKVKE---------FATPLKVDASNFDKLVEV------MKE   77 (365)
T ss_dssp             -CCEEEEECC--SHHHHHHHHHHTTTSEEEEEESCHHHHHHHTT---------TSEEEECCTTCHHHHHHH------HTT
T ss_pred             CccEEEEECC--CHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhc---------cCCcEEEecCCHHHHHHH------HhC
Confidence            4468999998  77777777777667889999999887766542         24445556543  33443      257


Q ss_pred             eeEEEEcCCccchHHHHHHH
Q 026461          148 FDYAFVDADKDNYCNYHERL  167 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~  167 (238)
                      .|+|+.-.+........+.+
T Consensus        78 ~DvVi~~~p~~~~~~v~~~~   97 (365)
T 3abi_A           78 FELVIGALPGFLGFKSIKAA   97 (365)
T ss_dssp             CSEEEECCCGGGHHHHHHHH
T ss_pred             CCEEEEecCCcccchHHHHH
Confidence            89998765544333333333

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=92.10  E-value=0.35  Score=41.26  Aligned_cols=103  Identities=19%  Similarity=0.199  Sum_probs=62.0

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecc------------------
Q 026461           70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE------------------  130 (238)
Q Consensus        70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d------------------  130 (238)
                      ++.+|+-||+| .|..+..++..+  +.+|+++|.++...+.+.+.    |.    ++...+                  
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~~~l~~~~~l----Ga----~~~~l~~~~~~~~gya~~~~~~~~  252 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRL--GAKTTGYDVRPEVAEQVRSV----GA----QWLDLGIDAAGEGGYARELSEAER  252 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHH--TCEEEEECSSGGGHHHHHHT----TC----EECCCC-------------CHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc----CC----eEEeccccccccccchhhhhHHHH
Confidence            67899999997 455666666666  46899999999988877652    32    221100                  


Q ss_pred             --hhHHHHHHHhcccCCCCeeEEEEcCCcc--chHH-HHHHHHhccCCCeEEEEeccccCccc
Q 026461          131 --ALSVLDQLLKYSENEGSFDYAFVDADKD--NYCN-YHERLMKLLKVGGIAVYDNTLWGGTV  188 (238)
Q Consensus       131 --~~~~l~~~~~~~~~~~~fD~V~~d~~~~--~~~~-~~~~~~~~L~~gG~lv~~~~~~~g~~  188 (238)
                        ..+.+.+.      -...|+|+.-...+  ..+. +-+...+.+|||++|+--.+-.+|.+
T Consensus       253 ~~~~~~l~e~------l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~  309 (381)
T 3p2y_A          253 AQQQQALEDA------ITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGGNC  309 (381)
T ss_dssp             HHHHHHHHHH------HTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSB
T ss_pred             hhhHHHHHHH------HhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCCCcc
Confidence              01223333      37899998653111  1111 12566788899887775444444543

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=92.06  E-value=0.66  Score=40.43  Aligned_cols=40  Identities=20%  Similarity=0.221  Sum_probs=28.4

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHH
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGL  112 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~  112 (238)
                      -.+|--||+  ||.++.+|..+. .+.+|+|+|++++.++..+
T Consensus        21 m~~IaViGl--GYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln   61 (444)
T 3vtf_A           21 MASLSVLGL--GYVGVVHAVGFALLGHRVVGYDVNPSIVERLR   61 (444)
T ss_dssp             CCEEEEECC--SHHHHHHHHHHHHHTCEEEEECSCHHHHHHHH
T ss_pred             CCEEEEEcc--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHH
Confidence            357888887  666665554442 2568999999999887664

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=91.90  E-value=1.9  Score=34.20  Aligned_cols=82  Identities=16%  Similarity=0.128  Sum_probs=53.1

Q ss_pred             CCCEEEEEcc-cccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH------HHHHHhc
Q 026461           70 NAKKTIEIGV-FTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKY  141 (238)
Q Consensus        70 ~~~~vLeiG~-G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~~~  141 (238)
                      .++++|-.|+ |.|. +..+++.+ ..+.+|+.++.+++..+...+.+...+ ..++.++.+|..+.      +....+.
T Consensus        21 ~~k~vlITGasg~GI-G~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~   98 (266)
T 3o38_A           21 KGKVVLVTAAAGTGI-GSTTARRALLEGADVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQTVEK   98 (266)
T ss_dssp             TTCEEEESSCSSSSH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCch-HHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence            5678888886 4443 23333322 125789999999988888777776544 24689999987542      2222211


Q ss_pred             ccCCCCeeEEEEcCC
Q 026461          142 SENEGSFDYAFVDAD  156 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~  156 (238)
                         .+++|+++..+.
T Consensus        99 ---~g~id~li~~Ag  110 (266)
T 3o38_A           99 ---AGRLDVLVNNAG  110 (266)
T ss_dssp             ---HSCCCEEEECCC
T ss_pred             ---hCCCcEEEECCC
Confidence               368999998754

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=91.89  E-value=2.7  Score=34.02  Aligned_cols=80  Identities=13%  Similarity=0.128  Sum_probs=50.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCch-hHHHHHHHHHHcCCCCcEEEEecchhHH------HHHHHhc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRE-TYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKY  141 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~~~  141 (238)
                      ..+++|-.|++ |..+..+++.+. .+.+|+.++.++. ..+...+.+...+  .++.++.+|..+.      +....+.
T Consensus        46 ~gk~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           46 KGKNVLITGGD-SGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVRQ  122 (291)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            45788888865 455566655542 2578999998875 3444455554444  4688898887542      2222222


Q ss_pred             ccCCCCeeEEEEcC
Q 026461          142 SENEGSFDYAFVDA  155 (238)
Q Consensus       142 ~~~~~~fD~V~~d~  155 (238)
                         .+.+|+++..+
T Consensus       123 ---~g~iD~lvnnA  133 (291)
T 3ijr_A          123 ---LGSLNILVNNV  133 (291)
T ss_dssp             ---HSSCCEEEECC
T ss_pred             ---cCCCCEEEECC
Confidence               36899999874

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=91.86  E-value=2.6  Score=33.43  Aligned_cols=83  Identities=8%  Similarity=-0.011  Sum_probs=53.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH------HHHHHhcc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKYS  142 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~~~~  142 (238)
                      ..+.+|-.|++. ..+..+++.+. .+.+|+.++.+++..+.+.+.+....-..++.++.+|..+.      +....+. 
T Consensus         7 ~~k~~lVTGas~-GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-   84 (265)
T 3lf2_A            7 SEAVAVVTGGSS-GIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERT-   84 (265)
T ss_dssp             TTCEEEEETCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHH-
Confidence            467888888654 44555555442 25789999999988887777776532223588888887542      2222111 


Q ss_pred             cCCCCeeEEEEcCC
Q 026461          143 ENEGSFDYAFVDAD  156 (238)
Q Consensus       143 ~~~~~fD~V~~d~~  156 (238)
                        .+..|+++..+.
T Consensus        85 --~g~id~lvnnAg   96 (265)
T 3lf2_A           85 --LGCASILVNNAG   96 (265)
T ss_dssp             --HCSCSEEEECCC
T ss_pred             --cCCCCEEEECCC
Confidence              368999998753

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=91.85  E-value=1.8  Score=35.06  Aligned_cols=79  Identities=20%  Similarity=0.288  Sum_probs=51.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH------HHHHHHh
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLK  140 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~~~~~  140 (238)
                      ..++|.+|--|.+.| .+..+++.+ ..+.+|+.+|.+++.++.+.+.+   +  .++..+.+|..+      .+....+
T Consensus        26 rL~gKvalVTGas~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~---g--~~~~~~~~Dv~~~~~v~~~~~~~~~   99 (273)
T 4fgs_A           26 RLNAKIAVITGATSG-IGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI---G--GGAVGIQADSANLAELDRLYEKVKA   99 (273)
T ss_dssp             TTTTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--TTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             hhCCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---C--CCeEEEEecCCCHHHHHHHHHHHHH
Confidence            356788888887655 445555444 23689999999998877665544   3  356777888643      2222222


Q ss_pred             cccCCCCeeEEEEcC
Q 026461          141 YSENEGSFDYAFVDA  155 (238)
Q Consensus       141 ~~~~~~~fD~V~~d~  155 (238)
                      +   -++.|+++.++
T Consensus       100 ~---~G~iDiLVNNA  111 (273)
T 4fgs_A          100 E---AGRIDVLFVNA  111 (273)
T ss_dssp             H---HSCEEEEEECC
T ss_pred             H---cCCCCEEEECC
Confidence            2   47899999875

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=91.82  E-value=0.55  Score=38.74  Aligned_cols=95  Identities=11%  Similarity=-0.009  Sum_probs=59.4

Q ss_pred             HhhcCCCEEEEEc-cc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhccc
Q 026461           66 LRLVNAKKTIEIG-VF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE  143 (238)
Q Consensus        66 ~~~~~~~~vLeiG-~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~  143 (238)
                      ....+..+||-+| +| .|..++.+++..  +.+|++++ +++..+.++    +.|..   .++..+..+.+...     
T Consensus       148 ~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~--Ga~vi~~~-~~~~~~~~~----~lGa~---~~i~~~~~~~~~~~-----  212 (321)
T 3tqh_A          148 AEVKQGDVVLIHAGAGGVGHLAIQLAKQK--GTTVITTA-SKRNHAFLK----ALGAE---QCINYHEEDFLLAI-----  212 (321)
T ss_dssp             TTCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEE-CHHHHHHHH----HHTCS---EEEETTTSCHHHHC-----
T ss_pred             cCCCCCCEEEEEcCCcHHHHHHHHHHHHc--CCEEEEEe-ccchHHHHH----HcCCC---EEEeCCCcchhhhh-----
Confidence            3455677999986 44 688888888876  46899887 444455444    34653   23332222212221     


Q ss_pred             CCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                       ...+|+||-....   . .+..++++|+++|.++.-
T Consensus       213 -~~g~D~v~d~~g~---~-~~~~~~~~l~~~G~iv~~  244 (321)
T 3tqh_A          213 -STPVDAVIDLVGG---D-VGIQSIDCLKETGCIVSV  244 (321)
T ss_dssp             -CSCEEEEEESSCH---H-HHHHHGGGEEEEEEEEEC
T ss_pred             -ccCCCEEEECCCc---H-HHHHHHHhccCCCEEEEe
Confidence             3689998854332   2 237788999999998874

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=91.81  E-value=0.38  Score=41.76  Aligned_cols=66  Identities=15%  Similarity=0.095  Sum_probs=45.7

Q ss_pred             ccCcHhHHHHHHHHH----hhcCCCEEEEEcccccHHHHHHHhhCC----CCCEEEEEeCCchhHHHHHHHHHH
Q 026461           52 MGTAPDAGQLMAMLL----RLVNAKKTIEIGVFTGYSLLLTALTIP----EDGQITAIDVNRETYEIGLPIIKK  117 (238)
Q Consensus        52 ~~~~~~~~~~l~~l~----~~~~~~~vLeiG~G~G~~t~~la~~~~----~~~~v~~iD~~~~~~~~a~~~~~~  117 (238)
                      +.+++..++++...+    ....+.+|+|+|.|.|....-++..+.    ...+++.||+|+...+.-++.+..
T Consensus       115 PeiS~~FGe~la~~~~~~~~~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  188 (432)
T 4f3n_A          115 PELSPLFAQTLARPVAQALDASGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA  188 (432)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHhcCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence            334444455554332    122357999999999998888776542    124899999999998887777764

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=91.71  E-value=1.8  Score=37.06  Aligned_cols=93  Identities=10%  Similarity=0.103  Sum_probs=57.0

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCC--------------CCcEEEEecchhHHHHHH
Q 026461           73 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--------------DHKINFIESEALSVLDQL  138 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--------------~~~v~~~~~d~~~~l~~~  138 (238)
                      +|.-||+  |+.+..++..+..+.+|+++|.+++.++..++.    +.              ..++.+. .+..+.+   
T Consensus         2 kI~VIG~--G~vG~~~A~~La~G~~V~~~d~~~~~~~~l~~~----~~~i~e~~l~~~~~~~~~~l~~t-~~~~~~~---   71 (402)
T 1dlj_A            2 KIAVAGS--GYVGLSLGVLLSLQNEVTIVDILPSKVDKINNG----LSPIQDEYIEYYLKSKQLSIKAT-LDSKAAY---   71 (402)
T ss_dssp             EEEEECC--SHHHHHHHHHHTTTSEEEEECSCHHHHHHHHTT----CCSSCCHHHHHHHHHSCCCEEEE-SCHHHHH---
T ss_pred             EEEEECC--CHHHHHHHHHHhCCCEEEEEECCHHHHHHHHcC----CCCcCCCCHHHHHHhccCcEEEe-CCHHHHh---
Confidence            5677777  777777776665456899999998877655431    11              1122322 2322221   


Q ss_pred             HhcccCCCCeeEEEEcCCcc-----------chHHHHHHHHhccCCCeEEEEeccc
Q 026461          139 LKYSENEGSFDYAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       139 ~~~~~~~~~fD~V~~d~~~~-----------~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                             ...|+||+.-+..           .....++.+.+ +++|.+++.....
T Consensus        72 -------~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~  119 (402)
T 1dlj_A           72 -------KEAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTI  119 (402)
T ss_dssp             -------HHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCC
T ss_pred             -------cCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCC
Confidence                   3568999875433           25666777778 8888877763333

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=91.68  E-value=4.5  Score=32.68  Aligned_cols=82  Identities=12%  Similarity=0.104  Sum_probs=50.7

Q ss_pred             cCCCEEEEEccccc-HHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH------HHHHHh
Q 026461           69 VNAKKTIEIGVFTG-YSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLK  140 (238)
Q Consensus        69 ~~~~~vLeiG~G~G-~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~~  140 (238)
                      ...+++|-.|.+.| +.+..+++.+ ..+.+|+.++.++...+.+.+.....+   ++.++.+|..+.      +....+
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~  105 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELG---AFVAGHCDVADAASIDAVFETLEK  105 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHT---CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC---CceEEECCCCCHHHHHHHHHHHHH
Confidence            46788999997633 2333433333 125789999998766565555554443   478888887542      222222


Q ss_pred             cccCCCCeeEEEEcCC
Q 026461          141 YSENEGSFDYAFVDAD  156 (238)
Q Consensus       141 ~~~~~~~fD~V~~d~~  156 (238)
                      .   .+.+|+++..+.
T Consensus       106 ~---~g~iD~lVnnAG  118 (293)
T 3grk_A          106 K---WGKLDFLVHAIG  118 (293)
T ss_dssp             H---TSCCSEEEECCC
T ss_pred             h---cCCCCEEEECCc
Confidence            2   468999998754

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=91.66  E-value=2.2  Score=34.76  Aligned_cols=85  Identities=15%  Similarity=0.166  Sum_probs=55.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhc-ccC
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKY-SEN  144 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~-~~~  144 (238)
                      ...++||-.|++ |..+..+++.+ ..+.+|+.++.+++.++.+.+.+...+  .++.++.+|..+.  +..+.++ ...
T Consensus        29 l~gk~vlVTGas-~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (301)
T 3tjr_A           29 FDGRAAVVTGGA-SGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFRL  105 (301)
T ss_dssp             STTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence            356788888866 44555555544 225799999999998888887777654  4688888887642  2221110 001


Q ss_pred             CCCeeEEEEcCC
Q 026461          145 EGSFDYAFVDAD  156 (238)
Q Consensus       145 ~~~fD~V~~d~~  156 (238)
                      .+.+|+++..+.
T Consensus       106 ~g~id~lvnnAg  117 (301)
T 3tjr_A          106 LGGVDVVFSNAG  117 (301)
T ss_dssp             HSSCSEEEECCC
T ss_pred             CCCCCEEEECCC
Confidence            358999998754

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=91.62  E-value=0.56  Score=39.98  Aligned_cols=42  Identities=24%  Similarity=0.220  Sum_probs=31.9

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHH
Q 026461           70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLP  113 (238)
Q Consensus        70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~  113 (238)
                      ++++|+-+|+| .|..+..++..+.  .+|+.+|.++...+.+++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~~~d~~~~~~~~~~~  213 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAATKEQVES  213 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTTHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            57899999997 4555566666664  589999999987776654

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=91.55  E-value=1.3  Score=36.55  Aligned_cols=83  Identities=10%  Similarity=0.113  Sum_probs=57.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH------HHHHHhcc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKYS  142 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~~~~  142 (238)
                      ..++||-.|++. +.+..+++.+ ..+.+|+.++.+++..+.+.+.+...+...++.++.+|..+.      +....+. 
T Consensus         7 ~~k~vlVTGas~-gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~-   84 (319)
T 3ioy_A            7 AGRTAFVTGGAN-GVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR-   84 (319)
T ss_dssp             TTCEEEEETTTS-THHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEcCCch-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh-
Confidence            457888888664 4455655554 236799999999998888887777666444789999887542      2222222 


Q ss_pred             cCCCCeeEEEEcCC
Q 026461          143 ENEGSFDYAFVDAD  156 (238)
Q Consensus       143 ~~~~~fD~V~~d~~  156 (238)
                        .+.+|+++..+.
T Consensus        85 --~g~id~lv~nAg   96 (319)
T 3ioy_A           85 --FGPVSILCNNAG   96 (319)
T ss_dssp             --TCCEEEEEECCC
T ss_pred             --CCCCCEEEECCC
Confidence              368999998754

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=91.51  E-value=2.5  Score=35.65  Aligned_cols=92  Identities=11%  Similarity=0.013  Sum_probs=59.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      ...+|.-||+  |..+..++..+. .+.+|+++|.+++.++.+.+    .+.    .. ..+..+.+..       ....
T Consensus        21 ~~mkIgiIGl--G~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~----~g~----~~-~~s~~e~~~~-------a~~~   82 (358)
T 4e21_A           21 QSMQIGMIGL--GRMGADMVRRLRKGGHECVVYDLNVNAVQALER----EGI----AG-ARSIEEFCAK-------LVKP   82 (358)
T ss_dssp             -CCEEEEECC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHT----TTC----BC-CSSHHHHHHH-------SCSS
T ss_pred             cCCEEEEECc--hHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH----CCC----EE-eCCHHHHHhc-------CCCC
Confidence            3468999987  556655555442 14689999999887665543    232    11 2244444433       2567


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      |+||+--+.......++.+.+.|++|.+|+-
T Consensus        83 DvVi~~vp~~~v~~vl~~l~~~l~~g~iiId  113 (358)
T 4e21_A           83 RVVWLMVPAAVVDSMLQRMTPLLAANDIVID  113 (358)
T ss_dssp             CEEEECSCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             CEEEEeCCHHHHHHHHHHHHhhCCCCCEEEe
Confidence            9999876555667788888888988766653

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=91.48  E-value=0.22  Score=39.57  Aligned_cols=87  Identities=18%  Similarity=0.195  Sum_probs=53.2

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCC-----CEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           72 KKTIEIGVFTGYSLLLTALTIPED-----GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~~~-----~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      .+|.-||+  |..+..++..+...     .+|+.+|.+++.++...+.+   +    +.. ..+..+.+          .
T Consensus         3 ~~i~iIG~--G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~---g----~~~-~~~~~e~~----------~   62 (247)
T 3gt0_A            3 KQIGFIGC--GNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKY---G----LTT-TTDNNEVA----------K   62 (247)
T ss_dssp             CCEEEECC--SHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHH---C----CEE-CSCHHHHH----------H
T ss_pred             CeEEEECc--cHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHh---C----CEE-eCChHHHH----------H
Confidence            45788887  55555555443212     28999999998777665432   3    222 22333332          3


Q ss_pred             CeeEEEEcCCccchHHHHHHHHhccCCCeEEE
Q 026461          147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAV  178 (238)
Q Consensus       147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv  178 (238)
                      ..|+||+.-........++.+.+.+++|.+++
T Consensus        63 ~aDvVilav~~~~~~~v~~~l~~~l~~~~~vv   94 (247)
T 3gt0_A           63 NADILILSIKPDLYASIINEIKEIIKNDAIIV   94 (247)
T ss_dssp             HCSEEEECSCTTTHHHHC---CCSSCTTCEEE
T ss_pred             hCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEE
Confidence            56999998766677777788878888877666

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=91.45  E-value=0.1  Score=43.35  Aligned_cols=91  Identities=16%  Similarity=0.142  Sum_probs=58.9

Q ss_pred             EEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh--HHHHHHHhcccCCCCe
Q 026461           73 KTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL--SVLDQLLKYSENEGSF  148 (238)
Q Consensus        73 ~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~~l~~~~~~~~~~~~f  148 (238)
                      +||-+|+  |.|..++.++...  +.+|++++.+++..+.+++    .|..   .++..+..  +.+..+     ....+
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~--Ga~vi~~~~~~~~~~~~~~----lGa~---~v~~~~~~~~~~~~~~-----~~~~~  218 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKR--GYDVVASTGNREAADYLKQ----LGAS---EVISREDVYDGTLKAL-----SKQQW  218 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHH--TCCEEEEESSSSTHHHHHH----HTCS---EEEEHHHHCSSCCCSS-----CCCCE
T ss_pred             eEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCc---EEEECCCchHHHHHHh-----hcCCc
Confidence            7999996  5677778888775  4689999999888887765    2532   12211100  000111     13479


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      |+||-....    ..+...+++|+++|.++.-.
T Consensus       219 d~vid~~g~----~~~~~~~~~l~~~G~iv~~G  247 (330)
T 1tt7_A          219 QGAVDPVGG----KQLASLLSKIQYGGSVAVSG  247 (330)
T ss_dssp             EEEEESCCT----HHHHHHHTTEEEEEEEEECC
T ss_pred             cEEEECCcH----HHHHHHHHhhcCCCEEEEEe
Confidence            998755432    35777889999999988744

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=90.94  E-value=0.53  Score=40.47  Aligned_cols=41  Identities=22%  Similarity=0.195  Sum_probs=31.6

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHH
Q 026461           70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGL  112 (238)
Q Consensus        70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~  112 (238)
                      ++.+|+-+|+| .|..+..++..+.  .+|+.+|.++...+.++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~v~D~~~~~~~~~~  212 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQ  212 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCGGGHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHH
Confidence            57899999997 4555666776664  58999999998877764

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=90.90  E-value=0.45  Score=40.72  Aligned_cols=71  Identities=13%  Similarity=0.157  Sum_probs=47.0

Q ss_pred             CcHhHHHHHHHHHh-----hcC--CCEEEEEcccccHHHHHHHhhCC------CCCEEEEEeCCchhHHHHHHHHHHcCC
Q 026461           54 TAPDAGQLMAMLLR-----LVN--AKKTIEIGVFTGYSLLLTALTIP------EDGQITAIDVNRETYEIGLPIIKKAGV  120 (238)
Q Consensus        54 ~~~~~~~~l~~l~~-----~~~--~~~vLeiG~G~G~~t~~la~~~~------~~~~v~~iD~~~~~~~~a~~~~~~~~~  120 (238)
                      +++..++++...+.     ...  +-.|+|+|.|.|..+.-++..+.      ...+++.||+|+...+.-++.+...  
T Consensus        57 is~~FGe~la~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~--  134 (387)
T 1zkd_A           57 ISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI--  134 (387)
T ss_dssp             HCHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC--
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC--
Confidence            44555666554422     222  23799999999999888876542      1358999999998887666655432  


Q ss_pred             CCcEEEE
Q 026461          121 DHKINFI  127 (238)
Q Consensus       121 ~~~v~~~  127 (238)
                       +++++.
T Consensus       135 -~~v~W~  140 (387)
T 1zkd_A          135 -RNIHWH  140 (387)
T ss_dssp             -SSEEEE
T ss_pred             -CCeEEe
Confidence             256665

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=90.87  E-value=2.9  Score=36.43  Aligned_cols=101  Identities=13%  Similarity=0.185  Sum_probs=60.1

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHH------------HHcCCCCcEEEEecchhHHHHH
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPII------------KKAGVDHKINFIESEALSVLDQ  137 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~------------~~~~~~~~v~~~~~d~~~~l~~  137 (238)
                      .-+|--||+  |+.+..+|..+.. +.+|+++|++++.++..++..            .+.-...++++- .|..+.   
T Consensus         8 ~~~~~vIGl--G~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~t-td~~ea---   81 (446)
T 4a7p_A            8 SVRIAMIGT--GYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFT-TDLAEG---   81 (446)
T ss_dssp             CCEEEEECC--SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEE-SCHHHH---
T ss_pred             ceEEEEEcC--CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEE-CCHHHH---
Confidence            346777777  6666666655532 468999999999887765420            000001223332 233222   


Q ss_pred             HHhcccCCCCeeEEEEcCCcc-----------chHHHHHHHHhccCCCeEEEEecccc
Q 026461          138 LLKYSENEGSFDYAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       138 ~~~~~~~~~~fD~V~~d~~~~-----------~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      .       ..-|+||+.-+.+           .....++.+.+.|++|.++|......
T Consensus        82 ~-------~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~  132 (446)
T 4a7p_A           82 V-------KDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVP  132 (446)
T ss_dssp             H-------TTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCC
T ss_pred             H-------hcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCC
Confidence            1       4668998863221           24566677778999988887765544

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=90.80  E-value=0.64  Score=37.75  Aligned_cols=87  Identities=9%  Similarity=0.030  Sum_probs=56.0

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC----CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           72 KKTIEIGVFTGYSLLLTALTIPE----DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~~----~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      .+|.-||+  |..+..++..+..    ..+|+.+|.+++..+...+.   .|    +... .+..+.   .       ..
T Consensus         4 ~~I~iIG~--G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~---~g----i~~~-~~~~~~---~-------~~   63 (280)
T 3tri_A            4 SNITFIGG--GNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEK---CG----VHTT-QDNRQG---A-------LN   63 (280)
T ss_dssp             SCEEEESC--SHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHT---TC----CEEE-SCHHHH---H-------SS
T ss_pred             CEEEEEcc--cHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHH---cC----CEEe-CChHHH---H-------hc
Confidence            56888998  4454444443321    22799999999877766543   23    3332 232222   2       46


Q ss_pred             eeEEEEcCCccchHHHHHHHHhc-cCCCeEEE
Q 026461          148 FDYAFVDADKDNYCNYHERLMKL-LKVGGIAV  178 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~~~~-L~~gG~lv  178 (238)
                      .|+||+.-.+......++.+.+. ++++.+++
T Consensus        64 aDvVilav~p~~~~~vl~~l~~~~l~~~~iii   95 (280)
T 3tri_A           64 ADVVVLAVKPHQIKMVCEELKDILSETKILVI   95 (280)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHHHHTTTCEEE
T ss_pred             CCeEEEEeCHHHHHHHHHHHHhhccCCCeEEE
Confidence            79999987777778888888887 77765555

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=90.80  E-value=1.8  Score=38.07  Aligned_cols=101  Identities=13%  Similarity=0.124  Sum_probs=58.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHH---cCC---------CCcEEEEecchhHHHH
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKK---AGV---------DHKINFIESEALSVLD  136 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~---~~~---------~~~v~~~~~d~~~~l~  136 (238)
                      ...+|.-||+|  +.+..++..+.. +.+|+++|++++.++..++....   .++         ..++++. .|..+.+ 
T Consensus         7 ~~~~I~VIG~G--~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~t-td~~~a~-   82 (478)
T 2y0c_A            7 GSMNLTIIGSG--SVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFS-TDIEAAV-   82 (478)
T ss_dssp             CCCEEEEECCS--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEE-CCHHHHH-
T ss_pred             CCceEEEECcC--HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEE-CCHHHHh-
Confidence            45689999885  444444433321 45899999999888776653100   000         0123332 2332221 


Q ss_pred             HHHhcccCCCCeeEEEEcCCc----------cchHHHHHHHHhccCCCeEEEEeccc
Q 026461          137 QLLKYSENEGSFDYAFVDADK----------DNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       137 ~~~~~~~~~~~fD~V~~d~~~----------~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                               ...|+||+.-+.          ......++.+.+.|++|.+++.....
T Consensus        83 ---------~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~STv  130 (478)
T 2y0c_A           83 ---------AHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKSTV  130 (478)
T ss_dssp             ---------HHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCC
T ss_pred             ---------hcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCCc
Confidence                     356899987433          34566777777889998877654433

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=90.64  E-value=1.9  Score=34.29  Aligned_cols=78  Identities=13%  Similarity=0.089  Sum_probs=48.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCcEEEEec
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIES  129 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~--~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~  129 (238)
                      .++|+-+|+|  ..+..++..+.  .-++++.+|.+.                   ..++.+.+.+...+..-+++.+..
T Consensus        31 ~~~VlVvG~G--g~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~  108 (249)
T 1jw9_B           31 DSRVLIVGLG--GLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNA  108 (249)
T ss_dssp             HCEEEEECCS--HHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             CCeEEEEeeC--HHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEec
Confidence            4689999995  44444333331  136999999987                   677777777776554334666554


Q ss_pred             chhH-HHHHHHhcccCCCCeeEEEEcCC
Q 026461          130 EALS-VLDQLLKYSENEGSFDYAFVDAD  156 (238)
Q Consensus       130 d~~~-~l~~~~~~~~~~~~fD~V~~d~~  156 (238)
                      +..+ .+..+      -..+|+|+...+
T Consensus       109 ~~~~~~~~~~------~~~~DvVi~~~d  130 (249)
T 1jw9_B          109 LLDDAELAAL------IAEHDLVLDCTD  130 (249)
T ss_dssp             CCCHHHHHHH------HHTSSEEEECCS
T ss_pred             cCCHhHHHHH------HhCCCEEEEeCC
Confidence            4432 22222      257999986543

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=90.54  E-value=3  Score=33.31  Aligned_cols=80  Identities=11%  Similarity=0.099  Sum_probs=55.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH------HHHHHHhcc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYS  142 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~~~~~~~  142 (238)
                      +++.+|--|.+.| .+..+++.+. .+.+|+.+|.+++.++.+.+.+...+  .++.++.+|..+      .+....++ 
T Consensus         8 ~gKvalVTGas~G-IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~-   83 (255)
T 4g81_D            8 TGKTALVTGSARG-LGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG--YDAHGVAFDVTDELAIEAAFSKLDAE-   83 (255)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHT-
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHH-
Confidence            5677777776544 4555555542 36899999999999888888887766  357888888653      22333222 


Q ss_pred             cCCCCeeEEEEcC
Q 026461          143 ENEGSFDYAFVDA  155 (238)
Q Consensus       143 ~~~~~fD~V~~d~  155 (238)
                        .++.|+++.++
T Consensus        84 --~G~iDiLVNNA   94 (255)
T 4g81_D           84 --GIHVDILINNA   94 (255)
T ss_dssp             --TCCCCEEEECC
T ss_pred             --CCCCcEEEECC
Confidence              57899999875

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=90.52  E-value=1.4  Score=35.37  Aligned_cols=86  Identities=13%  Similarity=0.068  Sum_probs=53.8

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEE
Q 026461           73 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  151 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V  151 (238)
                      +|.-||+  |..+..++..+. .+.+|+++|.+++.++.+.    ..+...  .. ..+..+.           ...|+|
T Consensus         2 ~i~iiG~--G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~----~~g~~~--~~-~~~~~~~-----------~~~D~v   61 (279)
T 2f1k_A            2 KIGVVGL--GLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV----ERQLVD--EA-GQDLSLL-----------QTAKII   61 (279)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH----HTTSCS--EE-ESCGGGG-----------TTCSEE
T ss_pred             EEEEEcC--cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH----hCCCCc--cc-cCCHHHh-----------CCCCEE
Confidence            5777887  555555554432 1358999999988776553    234322  11 2222222           367999


Q ss_pred             EEcCCccchHHHHHHHHhccCCCeEEE
Q 026461          152 FVDADKDNYCNYHERLMKLLKVGGIAV  178 (238)
Q Consensus       152 ~~d~~~~~~~~~~~~~~~~L~~gG~lv  178 (238)
                      ++.-+.......++.+.+.++++.+++
T Consensus        62 i~av~~~~~~~~~~~l~~~~~~~~~vv   88 (279)
T 2f1k_A           62 FLCTPIQLILPTLEKLIPHLSPTAIVT   88 (279)
T ss_dssp             EECSCHHHHHHHHHHHGGGSCTTCEEE
T ss_pred             EEECCHHHHHHHHHHHHhhCCCCCEEE
Confidence            998776666777788878888877654

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=90.52  E-value=2.8  Score=33.19  Aligned_cols=80  Identities=13%  Similarity=0.069  Sum_probs=51.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEE-eCCchhHHHHHHHHHHcCCCCcEEEEecchhHH------HHHHHhc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAI-DVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKY  141 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~i-D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~~~  141 (238)
                      ..+++|-.|++.| .+..+++.+. .+.+|+.+ +.+++..+.+.+.+...+  .++.++.+|..+.      +....+.
T Consensus         7 ~~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (259)
T 3edm_A            7 TNRTIVVAGAGRD-IGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAADK   83 (259)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            5678888886544 4555555442 25688887 677777777766666554  4578888887542      2222111


Q ss_pred             ccCCCCeeEEEEcC
Q 026461          142 SENEGSFDYAFVDA  155 (238)
Q Consensus       142 ~~~~~~fD~V~~d~  155 (238)
                         .+..|+++..+
T Consensus        84 ---~g~id~lv~nA   94 (259)
T 3edm_A           84 ---FGEIHGLVHVA   94 (259)
T ss_dssp             ---HCSEEEEEECC
T ss_pred             ---hCCCCEEEECC
Confidence               36899999775

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=90.46  E-value=3.1  Score=33.09  Aligned_cols=81  Identities=19%  Similarity=0.131  Sum_probs=49.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCC-chhHHHHHHHHHHcCCCCcEEEEecchhHH------HHHHHhc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVN-RETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKY  141 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~~~  141 (238)
                      ..+++|-.|++ |..+..+++.+. .+.+|+.++.. .+..+...+.+...+  .++.++.+|..+.      +....+.
T Consensus        17 ~~k~~lVTGas-~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   93 (270)
T 3is3_A           17 DGKVALVTGSG-RGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAVAH   93 (270)
T ss_dssp             TTCEEEESCTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            55778888865 455556555442 25788887764 555666666666554  4688888887542      2222111


Q ss_pred             ccCCCCeeEEEEcCC
Q 026461          142 SENEGSFDYAFVDAD  156 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~  156 (238)
                         .+..|+++..+.
T Consensus        94 ---~g~id~lvnnAg  105 (270)
T 3is3_A           94 ---FGHLDIAVSNSG  105 (270)
T ss_dssp             ---HSCCCEEECCCC
T ss_pred             ---cCCCCEEEECCC
Confidence               368999997653

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=90.41  E-value=2.9  Score=33.85  Aligned_cols=81  Identities=14%  Similarity=0.105  Sum_probs=50.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCc--hhHHHHHHHHHHcCCCCcEEEEecchhHH------HHHHHh
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNR--ETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLK  140 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~~  140 (238)
                      ..+++|-.|++ |..+..+++.+. .+.+|+.++.+.  ...+...+.+...+  .++.++.+|..+.      +....+
T Consensus        48 ~~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  124 (294)
T 3r3s_A           48 KDRKALVTGGD-SGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKARE  124 (294)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            46788888864 555666665542 257899988863  34555555555554  4688888887542      222211


Q ss_pred             cccCCCCeeEEEEcCC
Q 026461          141 YSENEGSFDYAFVDAD  156 (238)
Q Consensus       141 ~~~~~~~fD~V~~d~~  156 (238)
                      .   .+..|+++..+.
T Consensus       125 ~---~g~iD~lv~nAg  137 (294)
T 3r3s_A          125 A---LGGLDILALVAG  137 (294)
T ss_dssp             H---HTCCCEEEECCC
T ss_pred             H---cCCCCEEEECCC
Confidence            1   368999998753

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=90.21  E-value=3.8  Score=32.29  Aligned_cols=83  Identities=11%  Similarity=0.047  Sum_probs=53.0

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH------HHHHHH
Q 026461           68 LVNAKKTIEIGVF-TGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLL  139 (238)
Q Consensus        68 ~~~~~~vLeiG~G-~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~~~~  139 (238)
                      ..+.++||-.|++ +|..+..+++.+. .+.+|+.++.+....+.+++.....+   ++.++.+|..+      .+....
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~   87 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG---SELVFPCDVADDAQIDALFASLK   87 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHHHH
Confidence            3467889999964 2455555555442 25789999998776666666555544   37788888654      222222


Q ss_pred             hcccCCCCeeEEEEcCC
Q 026461          140 KYSENEGSFDYAFVDAD  156 (238)
Q Consensus       140 ~~~~~~~~fD~V~~d~~  156 (238)
                      +.   .+++|+++..+.
T Consensus        88 ~~---~g~id~lv~nAg  101 (271)
T 3ek2_A           88 TH---WDSLDGLVHSIG  101 (271)
T ss_dssp             HH---CSCEEEEEECCC
T ss_pred             HH---cCCCCEEEECCc
Confidence            22   468999998753

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=90.11  E-value=2.7  Score=33.60  Aligned_cols=82  Identities=12%  Similarity=0.142  Sum_probs=56.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH------HHHHHHhc
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY  141 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~~~~~~  141 (238)
                      .+.|.+|--|.+.|. +..+++.+ ..+.+|+.+|.+++.++.+.+.+...|  .++.++.+|..+      ......++
T Consensus         5 L~gKvalVTGas~GI-G~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~   81 (254)
T 4fn4_A            5 LKNKVVIVTGAGSGI-GRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFET   81 (254)
T ss_dssp             GTTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHH-HHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            367888888866554 45555444 236899999999999998888888766  468888888653      22222222


Q ss_pred             ccCCCCeeEEEEcCC
Q 026461          142 SENEGSFDYAFVDAD  156 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~  156 (238)
                         -+..|+++.++.
T Consensus        82 ---~G~iDiLVNNAG   93 (254)
T 4fn4_A           82 ---YSRIDVLCNNAG   93 (254)
T ss_dssp             ---HSCCCEEEECCC
T ss_pred             ---cCCCCEEEECCc
Confidence               478999998753

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=90.09  E-value=3  Score=33.28  Aligned_cols=81  Identities=17%  Similarity=0.210  Sum_probs=51.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCC------------chhHHHHHHHHHHcCCCCcEEEEecchhHH--
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVN------------RETYEIGLPIIKKAGVDHKINFIESEALSV--  134 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~------------~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--  134 (238)
                      ..+++|-.|++ |..+..+++.+. .+.+|+.+|.+            ++.++...+.+...+  .++.++.+|..+.  
T Consensus        12 ~gk~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~   88 (278)
T 3sx2_A           12 TGKVAFITGAA-RGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG--SRIVARQADVRDRES   88 (278)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT--CCEEEEECCTTCHHH
T ss_pred             CCCEEEEECCC-ChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcC--CeEEEEeCCCCCHHH
Confidence            56788888854 555555555542 36789999987            555665555555554  4688999887542  


Q ss_pred             ----HHHHHhcccCCCCeeEEEEcCC
Q 026461          135 ----LDQLLKYSENEGSFDYAFVDAD  156 (238)
Q Consensus       135 ----l~~~~~~~~~~~~fD~V~~d~~  156 (238)
                          +....+.   .+..|+++..+.
T Consensus        89 v~~~~~~~~~~---~g~id~lv~nAg  111 (278)
T 3sx2_A           89 LSAALQAGLDE---LGRLDIVVANAG  111 (278)
T ss_dssp             HHHHHHHHHHH---HCCCCEEEECCC
T ss_pred             HHHHHHHHHHH---cCCCCEEEECCC
Confidence                2222111   368999998754

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=90.05  E-value=1.7  Score=37.94  Aligned_cols=97  Identities=16%  Similarity=0.073  Sum_probs=0.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCE-EEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH--HHHHHHhcccCC
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENE  145 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~l~~~~~~~~~~  145 (238)
                      .+..+|+-+||  |..+..+|+.+...++ |+.||.+++.++.+.+.+       .+..+.||+.+  .+.+.     .-
T Consensus         1 ~~~M~iiI~G~--G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~-------~~~~i~Gd~~~~~~L~~A-----gi   66 (461)
T 4g65_A            1 SNAMKIIILGA--GQVGGTLAENLVGENNDITIVDKDGDRLRELQDKY-------DLRVVNGHASHPDVLHEA-----GA   66 (461)
T ss_dssp             -CCEEEEEECC--SHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS-------SCEEEESCTTCHHHHHHH-----TT
T ss_pred             CCcCEEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc-------CcEEEEEcCCCHHHHHhc-----CC


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ...|+++.--......-....+.+.+.+.-.++.
T Consensus        67 ~~ad~~ia~t~~De~Nl~~~~~Ak~~~~~~~~ia  100 (461)
T 4g65_A           67 QDADMLVAVTNTDETNMAACQVAFTLFNTPNRIA  100 (461)
T ss_dssp             TTCSEEEECCSCHHHHHHHHHHHHHHHCCSSEEE
T ss_pred             CcCCEEEEEcCChHHHHHHHHHHHHhcCCcccee

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=89.91  E-value=4.8  Score=31.13  Aligned_cols=86  Identities=10%  Similarity=0.080  Sum_probs=54.3

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCC--CEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhcccCCC
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPED--GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEG  146 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~~~~~~  146 (238)
                      .++||-.| |+|..+..+++.+-..  .+|++++.+++.....        ...++.++.+|..+.  +...      -.
T Consensus        23 mk~vlVtG-atG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~--------~~~~~~~~~~Dl~d~~~~~~~------~~   87 (236)
T 3qvo_A           23 MKNVLILG-AGGQIARHVINQLADKQTIKQTLFARQPAKIHKP--------YPTNSQIIMGDVLNHAALKQA------MQ   87 (236)
T ss_dssp             CEEEEEET-TTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSS--------CCTTEEEEECCTTCHHHHHHH------HT
T ss_pred             ccEEEEEe-CCcHHHHHHHHHHHhCCCceEEEEEcChhhhccc--------ccCCcEEEEecCCCHHHHHHH------hc
Confidence            35678777 5677788877776444  4899999987643211        124689999998652  3333      25


Q ss_pred             CeeEEEEcCCccchHHHHHHHHhcc
Q 026461          147 SFDYAFVDADKDNYCNYHERLMKLL  171 (238)
Q Consensus       147 ~fD~V~~d~~~~~~~~~~~~~~~~L  171 (238)
                      ..|+||............+.+.+.+
T Consensus        88 ~~D~vv~~a~~~~~~~~~~~~~~~~  112 (236)
T 3qvo_A           88 GQDIVYANLTGEDLDIQANSVIAAM  112 (236)
T ss_dssp             TCSEEEEECCSTTHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCCCchhHHHHHHHHHH
Confidence            7899998766544443344444444

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=89.89  E-value=6.2  Score=31.45  Aligned_cols=82  Identities=17%  Similarity=0.138  Sum_probs=50.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCC-chhHHHHHHHHHHcCCCCcEEEEecchhHH------HHHHHh
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVN-RETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLK  140 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~~  140 (238)
                      ...+++|-.|++ |..+..+++.+. .+.+|+.++.. .+..+...+.+...+  .++.++.+|..+.      +....+
T Consensus        29 l~gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  105 (271)
T 3v2g_A           29 LAGKTAFVTGGS-RGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAEAIEQAIRETVE  105 (271)
T ss_dssp             CTTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            356788888865 445555555442 25788888665 455566666666554  4688888887542      222221


Q ss_pred             cccCCCCeeEEEEcCC
Q 026461          141 YSENEGSFDYAFVDAD  156 (238)
Q Consensus       141 ~~~~~~~fD~V~~d~~  156 (238)
                      .   .++.|+++..+.
T Consensus       106 ~---~g~iD~lvnnAg  118 (271)
T 3v2g_A          106 A---LGGLDILVNSAG  118 (271)
T ss_dssp             H---HSCCCEEEECCC
T ss_pred             H---cCCCcEEEECCC
Confidence            1   368999998753

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=89.81  E-value=1.6  Score=41.99  Aligned_cols=78  Identities=8%  Similarity=-0.095  Sum_probs=53.6

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcc--------
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS--------  142 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~--------  142 (238)
                      .-+++|+-||.|+.++-|..+-- ...+.++|+++.+++.-+.|+      ....++.+|+.++.......+        
T Consensus       540 ~l~~iDLFaG~GGlslGl~~AG~-~~vv~avEid~~A~~ty~~N~------p~~~~~~~DI~~l~~~~~~~di~~~~~~~  612 (1002)
T 3swr_A          540 KLRTLDVFSGCGGLSEGFHQAGI-SDTLWAIEMWDPAAQAFRLNN------PGSTVFTEDCNILLKLVMAGETTNSRGQR  612 (1002)
T ss_dssp             CEEEEEESCTTSHHHHHHHHHTS-EEEEEEECSSHHHHHHHHHHC------TTSEEECSCHHHHHHHHHHTCSBCTTCCB
T ss_pred             CCeEEEeccCccHHHHHHHHCCC-CceEEEEECCHHHHHHHHHhC------CCCccccccHHHHhhhccchhhhhhhhhh
Confidence            34899999999999998876510 125789999999988877764      235678888876643321100        


Q ss_pred             -cCCCCeeEEEEcC
Q 026461          143 -ENEGSFDYAFVDA  155 (238)
Q Consensus       143 -~~~~~fD~V~~d~  155 (238)
                       +..+.+|+|+...
T Consensus       613 lp~~~~vDll~GGp  626 (1002)
T 3swr_A          613 LPQKGDVEMLCGGP  626 (1002)
T ss_dssp             CCCTTTCSEEEECC
T ss_pred             cccCCCeeEEEEcC
Confidence             1134789998764

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=89.79  E-value=1.1  Score=39.64  Aligned_cols=87  Identities=11%  Similarity=0.105  Sum_probs=54.1

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           69 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        69 ~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ...++|+-+|+| .|......+..+  +.+|+++|.++...+.+.+    .|.    ++  .+..+.   +       ..
T Consensus       272 l~GktV~IiG~G~IG~~~A~~lka~--Ga~Viv~d~~~~~~~~A~~----~Ga----~~--~~l~e~---l-------~~  329 (494)
T 3ce6_A          272 IGGKKVLICGYGDVGKGCAEAMKGQ--GARVSVTEIDPINALQAMM----EGF----DV--VTVEEA---I-------GD  329 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTC----EE--CCHHHH---G-------GG
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCC----EE--ecHHHH---H-------hC
Confidence            467899999985 344444455554  4699999999987766643    243    22  232222   2       46


Q ss_pred             eeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      .|+|+..........  ....+.+++||+++.
T Consensus       330 aDvVi~atgt~~~i~--~~~l~~mk~ggilvn  359 (494)
T 3ce6_A          330 ADIVVTATGNKDIIM--LEHIKAMKDHAILGN  359 (494)
T ss_dssp             CSEEEECSSSSCSBC--HHHHHHSCTTCEEEE
T ss_pred             CCEEEECCCCHHHHH--HHHHHhcCCCcEEEE
Confidence            899998643322111  245677899998875

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=89.67  E-value=1.2  Score=38.33  Aligned_cols=42  Identities=24%  Similarity=0.232  Sum_probs=33.7

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHH
Q 026461           70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLP  113 (238)
Q Consensus        70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~  113 (238)
                      ++.+|+-||+| .|..+..++..+  +.+|+.+|.++...+.+++
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~~~l~~~~~  231 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRL--GAVVSATDVRPAAKEQVAS  231 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSTTHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH
Confidence            57899999998 566667777776  4699999999988777765

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=89.56  E-value=1.8  Score=38.04  Aligned_cols=105  Identities=16%  Similarity=0.063  Sum_probs=58.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCC--CC-EEEEEeCCch----hHHHHHHHH--------------HHcCCCCcEEE
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPE--DG-QITAIDVNRE----TYEIGLPII--------------KKAGVDHKINF  126 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~--~~-~v~~iD~~~~----~~~~a~~~~--------------~~~~~~~~v~~  126 (238)
                      ..+..+|.-||+|.  .+..+|..+..  +. +|+++|++++    .++..++..              .+.-...++.+
T Consensus        15 ~~~~mkIaVIGlG~--mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~   92 (478)
T 3g79_A           15 RGPIKKIGVLGMGY--VGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFEC   92 (478)
T ss_dssp             HCSCCEEEEECCST--THHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEE
T ss_pred             cCCCCEEEEECcCH--HHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEE
Confidence            34557899999864  33333333221  35 7999999999    776554310              00000123433


Q ss_pred             EecchhHHHHHHHhcccCCCCeeEEEEcCCc---------cc---hHHHHHHHHhccCCCeEEEEeccccCc
Q 026461          127 IESEALSVLDQLLKYSENEGSFDYAFVDADK---------DN---YCNYHERLMKLLKVGGIAVYDNTLWGG  186 (238)
Q Consensus       127 ~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~---------~~---~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (238)
                      - .| .+.          -..-|+||+.-+.         .+   .....+.+.+.|++|.++|.......|
T Consensus        93 t-td-~ea----------~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pg  152 (478)
T 3g79_A           93 T-PD-FSR----------ISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPG  152 (478)
T ss_dssp             E-SC-GGG----------GGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTT
T ss_pred             e-Cc-HHH----------HhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChH
Confidence            2 23 222          1467899986322         12   234456677889999888776655544

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=89.44  E-value=1.6  Score=35.30  Aligned_cols=81  Identities=19%  Similarity=0.123  Sum_probs=53.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH------HHHHHhcc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKYS  142 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~~~~  142 (238)
                      ..+.+|-.|++ |..+..+++.+. .+.+|+.++.+++..+.+.+.+...+  .++.++.+|..+.      +....+. 
T Consensus        27 ~~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~-  102 (283)
T 3v8b_A           27 PSPVALITGAG-SGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAG--GQAIALEADVSDELQMRNAVRDLVLK-  102 (283)
T ss_dssp             CCCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTT--CCEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH-
Confidence            56788888865 445555555442 25799999999988877777665443  4688888887542      2222211 


Q ss_pred             cCCCCeeEEEEcCC
Q 026461          143 ENEGSFDYAFVDAD  156 (238)
Q Consensus       143 ~~~~~fD~V~~d~~  156 (238)
                        .+.+|+++..+.
T Consensus       103 --~g~iD~lVnnAg  114 (283)
T 3v8b_A          103 --FGHLDIVVANAG  114 (283)
T ss_dssp             --HSCCCEEEECCC
T ss_pred             --hCCCCEEEECCC
Confidence              368999998754

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=89.36  E-value=3  Score=33.04  Aligned_cols=81  Identities=15%  Similarity=0.097  Sum_probs=55.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH------HHHHHhc
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKY  141 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~~~  141 (238)
                      ...+++|-.|++.| .+..+++.+ ..+.+|+.++.+++..+...+.+...+  .++.++.+|..+.      +....+.
T Consensus         9 l~~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   85 (264)
T 3ucx_A            9 LTDKVVVISGVGPA-LGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMKA   85 (264)
T ss_dssp             TTTCEEEEESCCTT-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCcH-HHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            35678898887655 344444443 225799999999988888877776655  4688898887542      2222222


Q ss_pred             ccCCCCeeEEEEcC
Q 026461          142 SENEGSFDYAFVDA  155 (238)
Q Consensus       142 ~~~~~~fD~V~~d~  155 (238)
                         .+..|+++..+
T Consensus        86 ---~g~id~lv~nA   96 (264)
T 3ucx_A           86 ---YGRVDVVINNA   96 (264)
T ss_dssp             ---TSCCSEEEECC
T ss_pred             ---cCCCcEEEECC
Confidence               46899999875

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=89.27  E-value=4.1  Score=31.86  Aligned_cols=81  Identities=22%  Similarity=0.156  Sum_probs=54.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH------HHHHHhcc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKYS  142 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~~~~  142 (238)
                      ..+++|-.|++ |..+..+++.+. .+.+|+.++.+++..+...+.+...+  .++.++.+|..+.      +....+. 
T Consensus         8 ~~k~vlITGas-~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~-   83 (253)
T 3qiv_A            8 ENKVGIVTGSG-GGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAE-   83 (253)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH-
Confidence            46788888864 555666665542 25789999999988888777776654  4688888887642      2222111 


Q ss_pred             cCCCCeeEEEEcCC
Q 026461          143 ENEGSFDYAFVDAD  156 (238)
Q Consensus       143 ~~~~~fD~V~~d~~  156 (238)
                        .+.+|+++..+.
T Consensus        84 --~g~id~li~~Ag   95 (253)
T 3qiv_A           84 --FGGIDYLVNNAA   95 (253)
T ss_dssp             --HSCCCEEEECCC
T ss_pred             --cCCCCEEEECCC
Confidence              358999998764

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=89.25  E-value=1.5  Score=35.69  Aligned_cols=34  Identities=9%  Similarity=0.099  Sum_probs=26.8

Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ..+|+||+.-........++.+.+.++++.+++.
T Consensus        82 ~~~D~vil~vk~~~~~~v~~~i~~~l~~~~~iv~  115 (317)
T 2qyt_A           82 GTVDYILFCTKDYDMERGVAEIRPMIGQNTKILP  115 (317)
T ss_dssp             CCEEEEEECCSSSCHHHHHHHHGGGEEEEEEEEE
T ss_pred             CCCCEEEEecCcccHHHHHHHHHhhcCCCCEEEE
Confidence            6899999987666778888888888888766554

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=89.21  E-value=2.6  Score=34.93  Aligned_cols=97  Identities=9%  Similarity=0.057  Sum_probs=57.7

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHH----cCCCCcEE--EEecchhHHHHHHHhcccC
Q 026461           72 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKK----AGVDHKIN--FIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~----~~~~~~v~--~~~~d~~~~l~~~~~~~~~  144 (238)
                      .+|.-||+|  ..+..++..+. .+.+|+.+|.+++.++..++....    .+......  ....+..+   .+      
T Consensus         5 mki~iiG~G--~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------   73 (359)
T 1bg6_A            5 KTYAVLGLG--NGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGL---AV------   73 (359)
T ss_dssp             CEEEEECCS--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHH---HH------
T ss_pred             CeEEEECCC--HHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHH---HH------
Confidence            579999985  44444444331 145899999998877666543100    00000000  11122211   12      


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                       ..+|+|++.-+.......++.+.+.++++.+++..
T Consensus        74 -~~~D~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           74 -KDADVILIVVPAIHHASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             -TTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             -hcCCEEEEeCCchHHHHHHHHHHHhCCCCCEEEEc
Confidence             57899999877666778888888889998766654

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=89.18  E-value=4.6  Score=32.26  Aligned_cols=82  Identities=15%  Similarity=0.148  Sum_probs=52.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeC-------------CchhHHHHHHHHHHcCCCCcEEEEecchhHH
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDV-------------NRETYEIGLPIIKKAGVDHKINFIESEALSV  134 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~-------------~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (238)
                      ...+++|-.|++. ..+..+++.+ ..+.+|+.+|.             +++.++...+.+...+  .++.++.+|..+.
T Consensus        13 l~gk~~lVTGas~-gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~   89 (280)
T 3pgx_A           13 LQGRVAFITGAAR-GQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQG--RKALTRVLDVRDD   89 (280)
T ss_dssp             TTTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT--CCEEEEECCTTCH
T ss_pred             cCCCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEEcCCCCH
Confidence            4667888888654 4455555544 23679999998             5666666666665544  4688888887532


Q ss_pred             ------HHHHHhcccCCCCeeEEEEcCC
Q 026461          135 ------LDQLLKYSENEGSFDYAFVDAD  156 (238)
Q Consensus       135 ------l~~~~~~~~~~~~fD~V~~d~~  156 (238)
                            +....+.   .+..|+++..+.
T Consensus        90 ~~v~~~~~~~~~~---~g~id~lvnnAg  114 (280)
T 3pgx_A           90 AALRELVADGMEQ---FGRLDVVVANAG  114 (280)
T ss_dssp             HHHHHHHHHHHHH---HCCCCEEEECCC
T ss_pred             HHHHHHHHHHHHH---cCCCCEEEECCC
Confidence                  2222111   368999998753

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=89.14  E-value=2.3  Score=34.79  Aligned_cols=60  Identities=10%  Similarity=0.082  Sum_probs=39.8

Q ss_pred             CCCEEEEEccc-ccHHHH-HHHhhCCCCCEEEEEeCCc------------------hhHHHHHHHHHHcCCCCcEEEEec
Q 026461           70 NAKKTIEIGVF-TGYSLL-LTALTIPEDGQITAIDVNR------------------ETYEIGLPIIKKAGVDHKINFIES  129 (238)
Q Consensus        70 ~~~~vLeiG~G-~G~~t~-~la~~~~~~~~v~~iD~~~------------------~~~~~a~~~~~~~~~~~~v~~~~~  129 (238)
                      ...+||-|||| .|.... .|+.. . -++++-+|.+.                  ...+.+++.+...+..-+++.+..
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~a-G-VG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~  112 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRC-G-IGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNY  112 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHH-T-CSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECC
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHc-C-CCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEecc
Confidence            55799999997 343332 23332 2 47999999876                  567778888877775545666654


Q ss_pred             ch
Q 026461          130 EA  131 (238)
Q Consensus       130 d~  131 (238)
                      +.
T Consensus       113 ~l  114 (292)
T 3h8v_A          113 NI  114 (292)
T ss_dssp             CT
T ss_pred             cC
Confidence            44

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=89.12  E-value=7.1  Score=30.84  Aligned_cols=81  Identities=20%  Similarity=0.088  Sum_probs=49.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCch---hHHHHHHHHHHcCCCCcEEEEecchhHH------HHHHH
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRE---TYEIGLPIIKKAGVDHKINFIESEALSV------LDQLL  139 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~---~~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~  139 (238)
                      ..+++|-.|++ |..+..+++.+. .+.+|+.++.+..   .++...+.+...+  .++.++.+|..+.      +....
T Consensus        10 ~~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~   86 (262)
T 3ksu_A           10 KNKVIVIAGGI-KNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQG--AKVALYQSDLSNEEEVAKLFDFAE   86 (262)
T ss_dssp             TTCEEEEETCS-SHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTT--CEEEEEECCCCSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHH
Confidence            45788888865 455666666653 3578998876543   4444444454433  4688888886532      22221


Q ss_pred             hcccCCCCeeEEEEcCC
Q 026461          140 KYSENEGSFDYAFVDAD  156 (238)
Q Consensus       140 ~~~~~~~~fD~V~~d~~  156 (238)
                      +.   .+..|+++..+.
T Consensus        87 ~~---~g~iD~lvnnAg  100 (262)
T 3ksu_A           87 KE---FGKVDIAINTVG  100 (262)
T ss_dssp             HH---HCSEEEEEECCC
T ss_pred             HH---cCCCCEEEECCC
Confidence            11   368999998753

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=89.07  E-value=7.2  Score=31.25  Aligned_cols=81  Identities=16%  Similarity=0.100  Sum_probs=51.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCch-------hHHHHHHHHHHcCCCCcEEEEecchhHH------H
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRE-------TYEIGLPIIKKAGVDHKINFIESEALSV------L  135 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~-------~~~~a~~~~~~~~~~~~v~~~~~d~~~~------l  135 (238)
                      ..+++|-.|++. ..+..+++.+ ..+.+|+.++.+++       .++...+.+...+  .++.++.+|..+.      +
T Consensus         8 ~~k~vlVTGas~-GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~   84 (285)
T 3sc4_A            8 RGKTMFISGGSR-GIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAG--GQALPIVGDIRDGDAVAAAV   84 (285)
T ss_dssp             TTCEEEEESCSS-HHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHT--SEEEEEECCTTSHHHHHHHH
T ss_pred             CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHH
Confidence            567888888654 4555655554 23579999999876       4555555555544  4688898887542      2


Q ss_pred             HHHHhcccCCCCeeEEEEcCC
Q 026461          136 DQLLKYSENEGSFDYAFVDAD  156 (238)
Q Consensus       136 ~~~~~~~~~~~~fD~V~~d~~  156 (238)
                      ....+.   .+..|+++..+.
T Consensus        85 ~~~~~~---~g~id~lvnnAg  102 (285)
T 3sc4_A           85 AKTVEQ---FGGIDICVNNAS  102 (285)
T ss_dssp             HHHHHH---HSCCSEEEECCC
T ss_pred             HHHHHH---cCCCCEEEECCC
Confidence            222221   368999998753

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=88.97  E-value=4.2  Score=32.13  Aligned_cols=86  Identities=16%  Similarity=0.125  Sum_probs=51.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhc-ccCC
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKY-SENE  145 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~-~~~~  145 (238)
                      ..+++|-.|+ +|..+..+++.+. .+.+|+.++.+++..+...+.+.......++.++.+|..+.  +..+.+. ....
T Consensus         6 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (267)
T 2gdz_A            6 NGKVALVTGA-AQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   84 (267)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            4577888885 4555666665542 25789999998877665555443321123588888887542  2221110 0002


Q ss_pred             CCeeEEEEcCC
Q 026461          146 GSFDYAFVDAD  156 (238)
Q Consensus       146 ~~fD~V~~d~~  156 (238)
                      +.+|+++..+.
T Consensus        85 g~id~lv~~Ag   95 (267)
T 2gdz_A           85 GRLDILVNNAG   95 (267)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            57899998764

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=88.95  E-value=3.7  Score=35.08  Aligned_cols=89  Identities=19%  Similarity=0.053  Sum_probs=54.9

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCC----CEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH--HHHHHHhcccCC
Q 026461           72 KKTIEIGVFTGYSLLLTALTIPED----GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENE  145 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~~~----~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~l~~~~~~~~~~  145 (238)
                      ++|+-+|+  |+.+..++..+...    .+|+.++.+++..+...+.+...+ ..++..+..|+.+  .+..+.++    
T Consensus         2 ~kVlIiGa--GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~-~~~~~~~~~D~~d~~~l~~~l~~----   74 (405)
T 4ina_A            2 AKVLQIGA--GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKG-YGEIDITTVDADSIEELVALINE----   74 (405)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTT-CCCCEEEECCTTCHHHHHHHHHH----
T ss_pred             CEEEEECC--CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhc-CCceEEEEecCCCHHHHHHHHHh----
Confidence            47899998  56777766655322    389999999988777666655432 1347777777643  33343221    


Q ss_pred             CCeeEEEEcCCccchHHHHHHH
Q 026461          146 GSFDYAFVDADKDNYCNYHERL  167 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~  167 (238)
                      ...|+|+...+........+.+
T Consensus        75 ~~~DvVin~ag~~~~~~v~~a~   96 (405)
T 4ina_A           75 VKPQIVLNIALPYQDLTIMEAC   96 (405)
T ss_dssp             HCCSEEEECSCGGGHHHHHHHH
T ss_pred             hCCCEEEECCCcccChHHHHHH
Confidence            2489999876544333444433

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=88.91  E-value=1.1  Score=37.32  Aligned_cols=95  Identities=13%  Similarity=0.041  Sum_probs=55.6

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-C-------CEEEEEeCCch-----hHHHHHHHHHHc----C--CCCcEEEEecchh
Q 026461           72 KKTIEIGVFTGYSLLLTALTIPE-D-------GQITAIDVNRE-----TYEIGLPIIKKA----G--VDHKINFIESEAL  132 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~~-~-------~~v~~iD~~~~-----~~~~a~~~~~~~----~--~~~~v~~~~~d~~  132 (238)
                      .+|.-||+|  ..+..++..+.. +       .+|+.+|.+++     ..+..++.-...    +  +..++.+. .+..
T Consensus         9 mkI~iIG~G--~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~   85 (354)
T 1x0v_A            9 KKVCIVGSG--NWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAV-PDVV   85 (354)
T ss_dssp             EEEEEECCS--HHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEE-SSHH
T ss_pred             CeEEEECCC--HHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEE-cCHH
Confidence            479999985  444444333321 2       47999999887     555544321000    1  11223322 2322


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      +.   .       ...|+||+.-+.......++.+.+.++++.+++.
T Consensus        86 ~~---~-------~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~  122 (354)
T 1x0v_A           86 QA---A-------EDADILIFVVPHQFIGKICDQLKGHLKANATGIS  122 (354)
T ss_dssp             HH---H-------TTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEE
T ss_pred             HH---H-------cCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence            21   2       5789999987766777888888888888776553

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=88.63  E-value=5  Score=31.91  Aligned_cols=81  Identities=15%  Similarity=-0.001  Sum_probs=48.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEE-eCCchhHHHHHHHHHHcCCCCcEEEEecchhHH------HHHHHhc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAI-DVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKY  141 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~i-D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~~~  141 (238)
                      ..+.+|-.|++. ..+..+++.+. .+.+|+.+ ..+++..+...+.+...+  .++.++.+|..+.      +....+.
T Consensus        26 ~~k~~lVTGas~-GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~  102 (267)
T 3u5t_A           26 TNKVAIVTGASR-GIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAG--GKALTAQADVSDPAAVRRLFATAEEA  102 (267)
T ss_dssp             -CCEEEEESCSS-HHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            567888888654 44555554442 25678776 445566666666666554  4688888887542      2222111


Q ss_pred             ccCCCCeeEEEEcCC
Q 026461          142 SENEGSFDYAFVDAD  156 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~  156 (238)
                         .+..|+++..+.
T Consensus       103 ---~g~iD~lvnnAG  114 (267)
T 3u5t_A          103 ---FGGVDVLVNNAG  114 (267)
T ss_dssp             ---HSCEEEEEECCC
T ss_pred             ---cCCCCEEEECCC
Confidence               368999998753

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=88.59  E-value=1.5  Score=35.39  Aligned_cols=89  Identities=17%  Similarity=0.120  Sum_probs=53.8

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC---CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIP---EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..+|.-||+|  ..+..++..+.   ...+|+++|.+++..+.+.+    .|...  . ...+..+.          -..
T Consensus         6 ~~~I~iIG~G--~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g~~~--~-~~~~~~~~----------~~~   66 (290)
T 3b1f_A            6 EKTIYIAGLG--LIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE----RGIVD--E-ATADFKVF----------AAL   66 (290)
T ss_dssp             CCEEEEECCS--HHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH----TTSCS--E-EESCTTTT----------GGG
T ss_pred             cceEEEEeeC--HHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH----cCCcc--c-ccCCHHHh----------hcC
Confidence            3578999985  44444433321   13589999999887765543    34311  1 12222222          146


Q ss_pred             eeEEEEcCCccchHHHHHHHHhc-cCCCeEEE
Q 026461          148 FDYAFVDADKDNYCNYHERLMKL-LKVGGIAV  178 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~~~~-L~~gG~lv  178 (238)
                      .|+|++.-+.......++.+.+. ++++.+++
T Consensus        67 aDvVilavp~~~~~~v~~~l~~~~l~~~~ivi   98 (290)
T 3b1f_A           67 ADVIILAVPIKKTIDFIKILADLDLKEDVIIT   98 (290)
T ss_dssp             CSEEEECSCHHHHHHHHHHHHTSCCCTTCEEE
T ss_pred             CCEEEEcCCHHHHHHHHHHHHhcCCCCCCEEE
Confidence            79999887666667777777777 88766555

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=88.58  E-value=1.8  Score=34.23  Aligned_cols=83  Identities=17%  Similarity=0.098  Sum_probs=55.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhc-ccCC
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKY-SENE  145 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~-~~~~  145 (238)
                      ..+++|-.|++. ..+..+++.+. .+.+|+.++.+++..+.+.+.+...+  .++.++.+|..+.  +..+.+. ... 
T Consensus         6 ~~k~vlVTGas~-GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~-   81 (252)
T 3h7a_A            6 RNATVAVIGAGD-YIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAH-   81 (252)
T ss_dssp             CSCEEEEECCSS-HHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhh-
Confidence            457788888654 44555555442 25799999999998888888777665  4688999887542  2222111 011 


Q ss_pred             CCeeEEEEcCC
Q 026461          146 GSFDYAFVDAD  156 (238)
Q Consensus       146 ~~fD~V~~d~~  156 (238)
                      +.+|+++..+.
T Consensus        82 g~id~lv~nAg   92 (252)
T 3h7a_A           82 APLEVTIFNVG   92 (252)
T ss_dssp             SCEEEEEECCC
T ss_pred             CCceEEEECCC
Confidence            68999998754

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=88.47  E-value=3.1  Score=32.43  Aligned_cols=81  Identities=12%  Similarity=0.083  Sum_probs=55.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH------HHHHHhcc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKYS  142 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~~~~  142 (238)
                      ..+++|-.|+ +|..+..+++.+. .+.+|+.++.+++..+...+.+...+  .++.++.+|..+.      +....+. 
T Consensus         4 ~~k~vlITGa-s~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~-   79 (247)
T 3lyl_A            4 NEKVALVTGA-SRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAE-   79 (247)
T ss_dssp             TTCEEEESSC-SSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHT-
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHH-
Confidence            4567887775 4555566555542 25799999999988888877777665  4688888887542      2222222 


Q ss_pred             cCCCCeeEEEEcCC
Q 026461          143 ENEGSFDYAFVDAD  156 (238)
Q Consensus       143 ~~~~~fD~V~~d~~  156 (238)
                        .+++|+++..+.
T Consensus        80 --~~~id~li~~Ag   91 (247)
T 3lyl_A           80 --NLAIDILVNNAG   91 (247)
T ss_dssp             --TCCCSEEEECCC
T ss_pred             --cCCCCEEEECCC
Confidence              468999998753

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=88.27  E-value=0.79  Score=38.41  Aligned_cols=101  Identities=15%  Similarity=0.153  Sum_probs=53.9

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEE-EEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh--HHHHHHHhc
Q 026461           67 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQI-TAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL--SVLDQLLKY  141 (238)
Q Consensus        67 ~~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v-~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~~l~~~~~~  141 (238)
                      ...+..+||-+|+  +.|..++.+|+...  .++ ..++.++.. +.-.+.++..|..   .++..+-.  +.+.+..  
T Consensus       164 ~~~~g~~VlV~Ga~G~vG~~aiqlak~~G--a~vi~~~~~~~~~-~~~~~~~~~lGa~---~vi~~~~~~~~~~~~~~--  235 (357)
T 1zsy_A          164 QLQPGDSVIQNASNSGVGQAVIQIAAALG--LRTINVVRDRPDI-QKLSDRLKSLGAE---HVITEEELRRPEMKNFF--  235 (357)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHHT--CEEEEEECCCSCH-HHHHHHHHHTTCS---EEEEHHHHHSGGGGGTT--
T ss_pred             ccCCCCEEEEeCCcCHHHHHHHHHHHHcC--CEEEEEecCccch-HHHHHHHHhcCCc---EEEecCcchHHHHHHHH--
Confidence            3456679999996  57778888888763  454 455554432 1112233445642   22221110  1111110  


Q ss_pred             ccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          142 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                       ...+.+|+||-....   ... ...+++|+++|.++.-
T Consensus       236 -~~~~~~Dvvid~~g~---~~~-~~~~~~l~~~G~iv~~  269 (357)
T 1zsy_A          236 -KDMPQPRLALNCVGG---KSS-TELLRQLARGGTMVTY  269 (357)
T ss_dssp             -SSSCCCSEEEESSCH---HHH-HHHHTTSCTTCEEEEC
T ss_pred             -hCCCCceEEEECCCc---HHH-HHHHHhhCCCCEEEEE
Confidence             001259988754331   222 3467999999998874

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=88.27  E-value=2.4  Score=34.04  Aligned_cols=81  Identities=14%  Similarity=0.115  Sum_probs=53.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH------HHHHHhcc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKYS  142 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~~~~  142 (238)
                      .++++|-.|++ |..+..+++.+. .+.+|+.++.+++..+.+.+.+...+  .++.++.+|..+.      +....+. 
T Consensus        23 ~~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~-   98 (279)
T 3sju_A           23 RPQTAFVTGVS-SGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTSTDEVHAAVAAAVER-   98 (279)
T ss_dssp             --CEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH-
Confidence            56788888865 445555555442 25799999999988888777776654  4688888887542      2222211 


Q ss_pred             cCCCCeeEEEEcCC
Q 026461          143 ENEGSFDYAFVDAD  156 (238)
Q Consensus       143 ~~~~~fD~V~~d~~  156 (238)
                        .++.|+++..+.
T Consensus        99 --~g~id~lv~nAg  110 (279)
T 3sju_A           99 --FGPIGILVNSAG  110 (279)
T ss_dssp             --HCSCCEEEECCC
T ss_pred             --cCCCcEEEECCC
Confidence              368999998753

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=88.21  E-value=1.9  Score=40.20  Aligned_cols=58  Identities=10%  Similarity=-0.150  Sum_probs=41.2

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCC----CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPE----DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV  134 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~----~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (238)
                      ..+|||+-||.|+.+.-|..+...    ---+.++|+++.+++.-+.|+.      ...+.+.|+.++
T Consensus       212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp------~~~~~~~di~~i  273 (784)
T 4ft4_B          212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHP------QTEVRNEKADEF  273 (784)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCT------TSEEEESCHHHH
T ss_pred             CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCC------CCceecCcHHHh
Confidence            347999999999999888764210    0257899999999988887742      245556665544

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=88.15  E-value=4.9  Score=32.18  Aligned_cols=79  Identities=18%  Similarity=0.182  Sum_probs=49.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH------HHHHHhc
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKY  141 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~~~  141 (238)
                      ...+++|-.|++.| .+..+++.+ ..+.+|+.++.+++..+.+.+.+   +  .++.++.+|..+.      +....+.
T Consensus        27 l~gk~vlVTGas~g-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  100 (277)
T 3gvc_A           27 LAGKVAIVTGAGAG-IGLAVARRLADEGCHVLCADIDGDAADAAATKI---G--CGAAACRVDVSDEQQIIAMVDACVAA  100 (277)
T ss_dssp             CTTCEEEETTTTST-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---C--SSCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---C--CcceEEEecCCCHHHHHHHHHHHHHH
Confidence            35677888886544 445555443 22579999999988776665544   2  4578888887542      2222111


Q ss_pred             ccCCCCeeEEEEcCC
Q 026461          142 SENEGSFDYAFVDAD  156 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~  156 (238)
                         .+..|+++..+.
T Consensus       101 ---~g~iD~lvnnAg  112 (277)
T 3gvc_A          101 ---FGGVDKLVANAG  112 (277)
T ss_dssp             ---HSSCCEEEECCC
T ss_pred             ---cCCCCEEEECCC
Confidence               368999998753

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=88.10  E-value=0.81  Score=38.77  Aligned_cols=77  Identities=16%  Similarity=0.086  Sum_probs=47.4

Q ss_pred             cCCCEEEEEccc---ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           69 VNAKKTIEIGVF---TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        69 ~~~~~vLeiG~G---~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      .+..+||-+|+|   .|..++.+|+..  +.+|++++.+++..+.+++    .|...-+.....+..+.+.++..    .
T Consensus       169 ~~g~~vlV~gag~G~vG~~a~q~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~v~~~t~----~  238 (379)
T 3iup_A          169 LEGHSALVHTAAASNLGQMLNQICLKD--GIKLVNIVRKQEQADLLKA----QGAVHVCNAASPTFMQDLTEALV----S  238 (379)
T ss_dssp             HTTCSCEEESSTTSHHHHHHHHHHHHH--TCCEEEEESSHHHHHHHHH----TTCSCEEETTSTTHHHHHHHHHH----H
T ss_pred             cCCCEEEEECCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHh----CCCcEEEeCCChHHHHHHHHHhc----C
Confidence            567789988544   455566677765  4589999999988887764    46533233223333343333321    2


Q ss_pred             CCeeEEEEcC
Q 026461          146 GSFDYAFVDA  155 (238)
Q Consensus       146 ~~fD~V~~d~  155 (238)
                      ..+|+||-..
T Consensus       239 ~g~d~v~d~~  248 (379)
T 3iup_A          239 TGATIAFDAT  248 (379)
T ss_dssp             HCCCEEEESC
T ss_pred             CCceEEEECC
Confidence            4799988544

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=88.02  E-value=4.3  Score=32.01  Aligned_cols=83  Identities=13%  Similarity=0.100  Sum_probs=51.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeC-CchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhc-ccC
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKY-SEN  144 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~-~~~  144 (238)
                      ..++||-.|+ +|..+..+++.+. .+.+|+.++. +++..+...+.+...+  .++.++.+|..+.  +..+.++ ...
T Consensus        20 ~~k~vlItGa-sggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   96 (274)
T 1ja9_A           20 AGKVALTTGA-GRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVSH   96 (274)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            4567887775 5666777666552 2568999998 7776666666665544  4688888887542  2222110 000


Q ss_pred             CCCeeEEEEcC
Q 026461          145 EGSFDYAFVDA  155 (238)
Q Consensus       145 ~~~fD~V~~d~  155 (238)
                      .+.+|+|+..+
T Consensus        97 ~~~~d~vi~~A  107 (274)
T 1ja9_A           97 FGGLDFVMSNS  107 (274)
T ss_dssp             HSCEEEEECCC
T ss_pred             cCCCCEEEECC
Confidence            25899998765

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=87.67  E-value=1.4  Score=33.83  Aligned_cols=86  Identities=17%  Similarity=0.135  Sum_probs=53.1

Q ss_pred             CEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCch-hHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhcccCCC
Q 026461           72 KKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRE-TYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEG  146 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~--~~~~v~~iD~~~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~~~~~~  146 (238)
                      ++||-.| |+|..+..+++.+.  .+.+|++++.+++ .++...    ..  ..++.++.+|..+.  +...      -.
T Consensus         6 k~vlVtG-asg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~----~~--~~~~~~~~~D~~d~~~~~~~------~~   72 (221)
T 3r6d_A            6 XYITILG-AAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI----ID--HERVTVIEGSFQNPGXLEQA------VT   72 (221)
T ss_dssp             SEEEEES-TTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH----HT--STTEEEEECCTTCHHHHHHH------HT
T ss_pred             EEEEEEe-CCcHHHHHHHHHHHhcCCceEEEEecCccccchhhc----cC--CCceEEEECCCCCHHHHHHH------Hc
Confidence            4588888 45666666665543  3679999999876 443322    11  24689999998753  3333      25


Q ss_pred             CeeEEEEcCCccchHHHHHHHHhccC
Q 026461          147 SFDYAFVDADKDNYCNYHERLMKLLK  172 (238)
Q Consensus       147 ~fD~V~~d~~~~~~~~~~~~~~~~L~  172 (238)
                      ..|+|+..+...+..  .+.+.+.++
T Consensus        73 ~~d~vv~~ag~~n~~--~~~~~~~~~   96 (221)
T 3r6d_A           73 NAEVVFVGAMESGSD--MASIVKALS   96 (221)
T ss_dssp             TCSEEEESCCCCHHH--HHHHHHHHH
T ss_pred             CCCEEEEcCCCCChh--HHHHHHHHH
Confidence            789999887654333  444444443

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=87.61  E-value=4.3  Score=32.28  Aligned_cols=81  Identities=15%  Similarity=0.115  Sum_probs=54.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--H----HHHHhcc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--L----DQLLKYS  142 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l----~~~~~~~  142 (238)
                      ..++||-.|+ +|..+..+++.+. .+.+|+.++.+++..+...+.+...+  .++.++.+|..+.  +    ....+. 
T Consensus        30 ~~k~vlITGa-sggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~-  105 (272)
T 1yb1_A           30 TGEIVLITGA-GHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAE-  105 (272)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcC--CeEEEEEeeCCCHHHHHHHHHHHHHH-
Confidence            4578888885 4666666666542 25789999999887777766666544  4688888887542  2    222111 


Q ss_pred             cCCCCeeEEEEcCC
Q 026461          143 ENEGSFDYAFVDAD  156 (238)
Q Consensus       143 ~~~~~fD~V~~d~~  156 (238)
                        .+.+|+|+..+.
T Consensus       106 --~g~iD~li~~Ag  117 (272)
T 1yb1_A          106 --IGDVSILVNNAG  117 (272)
T ss_dssp             --TCCCSEEEECCC
T ss_pred             --CCCCcEEEECCC
Confidence              368999998753

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=87.61  E-value=2.7  Score=34.75  Aligned_cols=96  Identities=18%  Similarity=0.159  Sum_probs=46.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCchhHHHHHHHHHHc-CCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTI---PEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ++.+|.-||+|  +.+..++..+   +...+|+.+|++++.++-...-+... .+...+++..++. +   .+       
T Consensus         6 ~~~KI~IiGaG--~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~-~---a~-------   72 (318)
T 1y6j_A            6 SRSKVAIIGAG--FVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDY-S---DV-------   72 (318)
T ss_dssp             -CCCEEEECCS--HHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CG-G---GG-------
T ss_pred             CCCEEEEECCC--HHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCH-H---Hh-------
Confidence            35679999985  4333333222   22348999999987655322222221 1213455543331 1   12       


Q ss_pred             CCeeEEEEcCCccc----------------hHHHHHHHHhccCCCeEEEE
Q 026461          146 GSFDYAFVDADKDN----------------YCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       146 ~~fD~V~~d~~~~~----------------~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ..-|+|++-...+.                ..+..+.+.+. .|++++++
T Consensus        73 ~~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv  121 (318)
T 1y6j_A           73 KDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILV  121 (318)
T ss_dssp             TTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEE
T ss_pred             CCCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEE
Confidence            67899998754221                12333333333 68998777

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=87.58  E-value=8.3  Score=31.47  Aligned_cols=82  Identities=17%  Similarity=0.235  Sum_probs=50.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCC------------chhHHHHHHHHHHcCCCCcEEEEecchhHH-
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVN------------RETYEIGLPIIKKAGVDHKINFIESEALSV-  134 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~------------~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-  134 (238)
                      ...+++|-.|++ |..+..+++.+. .+.+|+.+|.+            ++.++...+.+...+  .++.++.+|..+. 
T Consensus        44 l~gk~~lVTGas-~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~  120 (317)
T 3oec_A           44 LQGKVAFITGAA-RGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQG--RRIIARQADVRDLA  120 (317)
T ss_dssp             TTTCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHH
T ss_pred             cCCCEEEEeCCC-cHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCCHH
Confidence            356778877865 445555555442 36799999886            455555555555544  4688888887542 


Q ss_pred             -----HHHHHhcccCCCCeeEEEEcCC
Q 026461          135 -----LDQLLKYSENEGSFDYAFVDAD  156 (238)
Q Consensus       135 -----l~~~~~~~~~~~~fD~V~~d~~  156 (238)
                           +....+.   .+.+|+++..+.
T Consensus       121 ~v~~~~~~~~~~---~g~iD~lVnnAg  144 (317)
T 3oec_A          121 SLQAVVDEALAE---FGHIDILVSNVG  144 (317)
T ss_dssp             HHHHHHHHHHHH---HSCCCEEEECCC
T ss_pred             HHHHHHHHHHHH---cCCCCEEEECCC
Confidence                 2222111   368999998753

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=87.43  E-value=2.6  Score=33.38  Aligned_cols=81  Identities=12%  Similarity=0.036  Sum_probs=55.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH------HHHHHhcc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKYS  142 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~~~~  142 (238)
                      ..++||-.|+ +|..+..+++.+ ..+.+|+.++.+++..+...+.+...+  .++.++.+|..+.      +....+. 
T Consensus        28 ~~k~vlITGa-s~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~-  103 (262)
T 3rkr_A           28 SGQVAVVTGA-SRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGVLAA-  103 (262)
T ss_dssp             TTCEEEESST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHHHh-
Confidence            5678888885 455666666554 235789999999988888877776654  4688888887542      2222111 


Q ss_pred             cCCCCeeEEEEcCC
Q 026461          143 ENEGSFDYAFVDAD  156 (238)
Q Consensus       143 ~~~~~fD~V~~d~~  156 (238)
                        .+..|+++..+.
T Consensus       104 --~g~id~lv~~Ag  115 (262)
T 3rkr_A          104 --HGRCDVLVNNAG  115 (262)
T ss_dssp             --HSCCSEEEECCC
T ss_pred             --cCCCCEEEECCC
Confidence              368999998754

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=87.26  E-value=1.7  Score=35.88  Aligned_cols=86  Identities=15%  Similarity=0.067  Sum_probs=54.0

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-C----CEEEEEeCCch--hHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           72 KKTIEIGVFTGYSLLLTALTIPE-D----GQITAIDVNRE--TYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~~-~----~~v~~iD~~~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      .+|.-||+  |..+..++..+.. +    ..|+.+|.+++  .++..+    ..|    +.+. .+..+..         
T Consensus        23 mkI~iIG~--G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~----~~G----~~~~-~~~~e~~---------   82 (322)
T 2izz_A           23 MSVGFIGA--GQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALR----KMG----VKLT-PHNKETV---------   82 (322)
T ss_dssp             CCEEEESC--SHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHH----HHT----CEEE-SCHHHHH---------
T ss_pred             CEEEEECC--CHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHH----HcC----CEEe-CChHHHh---------
Confidence            46889998  5555554444321 2    47999999875  555443    224    3332 2332322         


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEE
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV  178 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv  178 (238)
                       ...|+||+.-......+.+..+.+.++++.+++
T Consensus        83 -~~aDvVilav~~~~~~~vl~~l~~~l~~~~ivv  115 (322)
T 2izz_A           83 -QHSDVLFLAVKPHIIPFILDEIGADIEDRHIVV  115 (322)
T ss_dssp             -HHCSEEEECSCGGGHHHHHHHHGGGCCTTCEEE
T ss_pred             -ccCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEE
Confidence             357999998777777788888878888876554

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=87.21  E-value=3.7  Score=33.73  Aligned_cols=80  Identities=15%  Similarity=0.137  Sum_probs=51.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCC---CcEEEEecchhHH--HHHHHhccc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVD---HKINFIESEALSV--LDQLLKYSE  143 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~--l~~~~~~~~  143 (238)
                      ..++||-.| |+|..+.++++.+- .+.+|++++.++.........+......   .+++++.+|..+.  +...     
T Consensus        24 ~~~~vlVtG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-----   97 (351)
T 3ruf_A           24 SPKTWLITG-VAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQV-----   97 (351)
T ss_dssp             SCCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHH-----
T ss_pred             CCCeEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHH-----
Confidence            567899888 57888888777652 3578999998665333222222221100   4689999998653  3333     


Q ss_pred             CCCCeeEEEEcCC
Q 026461          144 NEGSFDYAFVDAD  156 (238)
Q Consensus       144 ~~~~fD~V~~d~~  156 (238)
                       -..+|+||..+.
T Consensus        98 -~~~~d~Vih~A~  109 (351)
T 3ruf_A           98 -MKGVDHVLHQAA  109 (351)
T ss_dssp             -TTTCSEEEECCC
T ss_pred             -hcCCCEEEECCc
Confidence             358999997764

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=87.10  E-value=7.2  Score=30.73  Aligned_cols=81  Identities=15%  Similarity=0.081  Sum_probs=52.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEE-eCCchhHHHHHHHHHHcCCCCcEEEEecchhHH------HHHHHhc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAI-DVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKY  141 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~i-D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~~~  141 (238)
                      +.+++|-.|+ +|..+..+++.+. .+.+|+.+ +.+++..+...+.+...+  .++.++.+|..+.      +....+.
T Consensus         3 ~~k~vlVTGa-s~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (258)
T 3oid_A            3 QNKCALVTGS-SRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLG--VKVLVVKANVGQPAKIKEMFQQIDET   79 (258)
T ss_dssp             CCCEEEESSC-SSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            4567777775 4555666666542 25678876 788877777777666544  4688898887542      2222111


Q ss_pred             ccCCCCeeEEEEcCC
Q 026461          142 SENEGSFDYAFVDAD  156 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~  156 (238)
                         .+++|+++..+.
T Consensus        80 ---~g~id~lv~nAg   91 (258)
T 3oid_A           80 ---FGRLDVFVNNAA   91 (258)
T ss_dssp             ---HSCCCEEEECCC
T ss_pred             ---cCCCCEEEECCC
Confidence               368999998753

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=87.08  E-value=2.2  Score=34.33  Aligned_cols=86  Identities=8%  Similarity=0.042  Sum_probs=55.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH---HHHHHhc-ccC
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV---LDQLLKY-SEN  144 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---l~~~~~~-~~~  144 (238)
                      ..++||-.|++ |+.+..+++.+ ..+.+|+.++.+++..+.+.+.+...+- .++.++.+|..+.   +..+.+. ...
T Consensus        11 ~~k~vlITGas-~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~~v~~~~~~~~~~   88 (311)
T 3o26_A           11 KRRCAVVTGGN-KGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNH-ENVVFHQLDVTDPIATMSSLADFIKTH   88 (311)
T ss_dssp             -CCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC-CSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEccCCCcHHHHHHHHHHHHHh
Confidence            46778877765 55566666554 2367999999999888777777766542 4688998887543   2222110 001


Q ss_pred             CCCeeEEEEcCCc
Q 026461          145 EGSFDYAFVDADK  157 (238)
Q Consensus       145 ~~~fD~V~~d~~~  157 (238)
                      .+.+|+++..+..
T Consensus        89 ~g~iD~lv~nAg~  101 (311)
T 3o26_A           89 FGKLDILVNNAGV  101 (311)
T ss_dssp             HSSCCEEEECCCC
T ss_pred             CCCCCEEEECCcc
Confidence            3689999988753

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=86.97  E-value=9.6  Score=29.89  Aligned_cols=79  Identities=14%  Similarity=0.107  Sum_probs=51.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH------HHHHHhc
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKY  141 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~~~  141 (238)
                      ...+++|-.|++ |..+..+++.+. .+.+|+.++.+++..+...+.+   +  .++.++.+|..+.      +....+.
T Consensus         6 l~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~v~~~~~~~~~~   79 (259)
T 4e6p_A            6 LEGKSALITGSA-RGIGRAFAEAYVREGATVAIADIDIERARQAAAEI---G--PAAYAVQMDVTRQDSIDAAIAATVEH   79 (259)
T ss_dssp             TTTCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CCceEEEeeCCCHHHHHHHHHHHHHH
Confidence            356788888854 555666665542 2578999999987766655544   2  4578888887542      2222222


Q ss_pred             ccCCCCeeEEEEcCC
Q 026461          142 SENEGSFDYAFVDAD  156 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~  156 (238)
                         .+.+|+++..+.
T Consensus        80 ---~g~id~lv~~Ag   91 (259)
T 4e6p_A           80 ---AGGLDILVNNAA   91 (259)
T ss_dssp             ---SSSCCEEEECCC
T ss_pred             ---cCCCCEEEECCC
Confidence               468999998754

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=86.94  E-value=2.3  Score=34.45  Aligned_cols=86  Identities=15%  Similarity=0.066  Sum_probs=55.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCC----CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH--HHHHHHhc-c
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPE----DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKY-S  142 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~----~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~l~~~~~~-~  142 (238)
                      ..+++|-.|++ |..+..+++.+..    ..+|+.++.+++.++.+.+.+.......++.++.+|..+  .+..+.++ .
T Consensus        32 ~~k~~lVTGas-~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~  110 (287)
T 3rku_A           32 AKKTVLITGAS-AGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLP  110 (287)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSC
T ss_pred             CCCEEEEecCC-ChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence            56889988865 4455565554421    238999999998888887777665333568888888754  23333221 0


Q ss_pred             cCCCCeeEEEEcCC
Q 026461          143 ENEGSFDYAFVDAD  156 (238)
Q Consensus       143 ~~~~~fD~V~~d~~  156 (238)
                      ...+..|+++..+.
T Consensus       111 ~~~g~iD~lVnnAG  124 (287)
T 3rku_A          111 QEFKDIDILVNNAG  124 (287)
T ss_dssp             GGGCSCCEEEECCC
T ss_pred             HhcCCCCEEEECCC
Confidence            11358999998754

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=86.93  E-value=4  Score=32.08  Aligned_cols=82  Identities=11%  Similarity=0.036  Sum_probs=53.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch--hH------HHHHHHh
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA--LS------VLDQLLK  140 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~------~l~~~~~  140 (238)
                      ..+++|-.|++ |..+..+++.+. .+.+|+.++.+++..+.+.+.+...+- .++.++.+|.  .+      .+....+
T Consensus        11 ~~k~vlVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (252)
T 3f1l_A           11 NDRIILVTGAS-DGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETG-RQPQWFILDLLTCTSENCQQLAQRIAV   88 (252)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS-CCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC-CCceEEEEecccCCHHHHHHHHHHHHH
Confidence            56788888865 455555555442 357999999999888777766655432 2577787776  21      2222222


Q ss_pred             cccCCCCeeEEEEcCC
Q 026461          141 YSENEGSFDYAFVDAD  156 (238)
Q Consensus       141 ~~~~~~~fD~V~~d~~  156 (238)
                      .   .+..|+++..+.
T Consensus        89 ~---~g~id~lv~nAg  101 (252)
T 3f1l_A           89 N---YPRLDGVLHNAG  101 (252)
T ss_dssp             H---CSCCSEEEECCC
T ss_pred             h---CCCCCEEEECCc
Confidence            2   468999998754

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=86.86  E-value=5  Score=30.45  Aligned_cols=70  Identities=14%  Similarity=0.055  Sum_probs=46.9

Q ss_pred             EEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEE
Q 026461           73 KTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  151 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V  151 (238)
                      +||-.| |+|..+..+++.+ ..+.+|++++.++.......        ..+++++.+|..+.-...      -..+|.|
T Consensus         2 kilVtG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~--------~~~~~~~~~D~~d~~~~~------~~~~d~v   66 (224)
T 3h2s_A            2 KIAVLG-ATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRL--------GATVATLVKEPLVLTEAD------LDSVDAV   66 (224)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHT--------CTTSEEEECCGGGCCHHH------HTTCSEE
T ss_pred             EEEEEc-CCCHHHHHHHHHHHHCCCEEEEEEeccccccccc--------CCCceEEecccccccHhh------cccCCEE
Confidence            577777 4677777777665 23578999999876544221        246899999987642222      2678999


Q ss_pred             EEcCCc
Q 026461          152 FVDADK  157 (238)
Q Consensus       152 ~~d~~~  157 (238)
                      |..+..
T Consensus        67 i~~ag~   72 (224)
T 3h2s_A           67 VDALSV   72 (224)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            987643

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=86.86  E-value=2.9  Score=32.90  Aligned_cols=83  Identities=11%  Similarity=0.054  Sum_probs=53.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCC-CcEEEEecchhHH------HHHHHhc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSV------LDQLLKY  141 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~------l~~~~~~  141 (238)
                      ..+++|-.|++ |..+..+++.+. .+.+|+.++.+++..+.+.+.+...+.. .++.++.+|..+.      +....+.
T Consensus         6 ~~k~~lVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (250)
T 3nyw_A            6 QKGLAIITGAS-QGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK   84 (250)
T ss_dssp             CCCEEEEESTT-SHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence            46778888865 444555555442 2579999999998888777777655322 4678888887542      2222111


Q ss_pred             ccCCCCeeEEEEcCC
Q 026461          142 SENEGSFDYAFVDAD  156 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~  156 (238)
                         .+..|+++..+.
T Consensus        85 ---~g~iD~lvnnAg   96 (250)
T 3nyw_A           85 ---YGAVDILVNAAA   96 (250)
T ss_dssp             ---HCCEEEEEECCC
T ss_pred             ---cCCCCEEEECCC
Confidence               368999998754

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=86.81  E-value=10  Score=30.13  Aligned_cols=81  Identities=16%  Similarity=0.149  Sum_probs=49.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchh-HHHHHHHHHHcCCCCcEEEEecchhHH------HHHHHhc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRET-YEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKY  141 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~-~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~~~  141 (238)
                      ..+++|-.|+ +|..+..+++.+. .+.+|+.++.++.. .+.+.+.+...+  .++.++.+|..+.      +....+.
T Consensus        28 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~  104 (283)
T 1g0o_A           28 EGKVALVTGA-GRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKI  104 (283)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            4567777775 5566666666542 25789999988653 444444555444  3588888886531      2222111


Q ss_pred             ccCCCCeeEEEEcCC
Q 026461          142 SENEGSFDYAFVDAD  156 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~  156 (238)
                         .+.+|+++..+.
T Consensus       105 ---~g~iD~lv~~Ag  116 (283)
T 1g0o_A          105 ---FGKLDIVCSNSG  116 (283)
T ss_dssp             ---HSCCCEEEECCC
T ss_pred             ---cCCCCEEEECCC
Confidence               258999998753

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=86.75  E-value=7.1  Score=30.48  Aligned_cols=84  Identities=15%  Similarity=0.069  Sum_probs=47.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCC-CCE-EEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH---HHHHHhc-cc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPE-DGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV---LDQLLKY-SE  143 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~-~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---l~~~~~~-~~  143 (238)
                      ..+++|-.|+ +|..+..+++.+.. +.+ |+.++.++.. +...+.....+ ..++.++.+|..+.   +..+.++ ..
T Consensus         4 ~~k~vlVtGa-s~gIG~~~a~~l~~~G~~~v~~~~r~~~~-~~~~~l~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~   80 (254)
T 1sby_A            4 TNKNVIFVAA-LGGIGLDTSRELVKRNLKNFVILDRVENP-TALAELKAINP-KVNITFHTYDVTVPVAESKKLLKKIFD   80 (254)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTCCSEEEEEESSCCH-HHHHHHHHHCT-TSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCcEEEEECC-CChHHHHHHHHHHHCCCcEEEEEecCchH-HHHHHHHHhCC-CceEEEEEEecCCChHHHHHHHHHHHH
Confidence            4578888885 57777777776532 344 8899987642 22222222221 24688888887532   2221110 00


Q ss_pred             CCCCeeEEEEcCC
Q 026461          144 NEGSFDYAFVDAD  156 (238)
Q Consensus       144 ~~~~fD~V~~d~~  156 (238)
                      ..+.+|+++..+.
T Consensus        81 ~~g~id~lv~~Ag   93 (254)
T 1sby_A           81 QLKTVDILINGAG   93 (254)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             hcCCCCEEEECCc
Confidence            0258999998764

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=86.74  E-value=1.6  Score=36.04  Aligned_cols=92  Identities=8%  Similarity=0.001  Sum_probs=55.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCC---CcEEE----E-ecchhHHHHHHHh
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVD---HKINF----I-ESEALSVLDQLLK  140 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~---~~v~~----~-~~d~~~~l~~~~~  140 (238)
                      ...+|.-||+|  ..+..++..+. .+..|+.+ .+++.++..++.    |+.   ....+    . ..+.    ..   
T Consensus        18 ~~~kI~IiGaG--a~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~----g~~~~~~~~~~~~~~~~~~~~----~~---   83 (318)
T 3hwr_A           18 QGMKVAIMGAG--AVGCYYGGMLARAGHEVILI-ARPQHVQAIEAT----GLRLETQSFDEQVKVSASSDP----SA---   83 (318)
T ss_dssp             --CEEEEESCS--HHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHH----CEEEECSSCEEEECCEEESCG----GG---
T ss_pred             cCCcEEEECcC--HHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhC----CeEEEcCCCcEEEeeeeeCCH----HH---
Confidence            45789999985  44444443332 14579999 888777666543    321   00111    0 1121    11   


Q ss_pred             cccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          141 YSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       141 ~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                          ...+|+|++.-........++.+.+.++++.+++.
T Consensus        84 ----~~~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~  118 (318)
T 3hwr_A           84 ----VQGADLVLFCVKSTDTQSAALAMKPALAKSALVLS  118 (318)
T ss_dssp             ----GTTCSEEEECCCGGGHHHHHHHHTTTSCTTCEEEE
T ss_pred             ----cCCCCEEEEEcccccHHHHHHHHHHhcCCCCEEEE
Confidence                25789999987767778888888889999876653

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=86.67  E-value=1.5  Score=38.55  Aligned_cols=100  Identities=15%  Similarity=0.100  Sum_probs=54.9

Q ss_pred             CEEEEEcccccHH--HHHHHhhCCCCCEEEEEeCCchhHHHHHHH------------HHHcCCCCcEEEEecchhHHHHH
Q 026461           72 KKTIEIGVFTGYS--LLLTALTIPEDGQITAIDVNRETYEIGLPI------------IKKAGVDHKINFIESEALSVLDQ  137 (238)
Q Consensus        72 ~~vLeiG~G~G~~--t~~la~~~~~~~~v~~iD~~~~~~~~a~~~------------~~~~~~~~~v~~~~~d~~~~l~~  137 (238)
                      .+|.-||+|.=+.  +..|++..+ +.+|+++|.+++.++..++.            +... ...++.+ ..|..+.+  
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~-g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~-~~~~l~~-t~~~~~~~--   84 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCP-HITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAA-RGRNLFF-SSDIPKAI--   84 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCT-TSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHH-BTTTEEE-ESCHHHHH--
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC-CCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHh-hcCCEEE-ECCHHHHh--
Confidence            4799999863222  233444321 45899999999887765431            0000 0112332 22322222  


Q ss_pred             HHhcccCCCCeeEEEEcCCcc---------------chHHHHHHHHhccCCCeEEEEecccc
Q 026461          138 LLKYSENEGSFDYAFVDADKD---------------NYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       138 ~~~~~~~~~~fD~V~~d~~~~---------------~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                              ...|+||+.-+..               .....++.+.+.+++|.+++......
T Consensus        85 --------~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~  138 (481)
T 2o3j_A           85 --------AEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVP  138 (481)
T ss_dssp             --------HHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCC
T ss_pred             --------hcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence                    3568999863211               14556677778899987777544443

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=86.61  E-value=1.6  Score=46.11  Aligned_cols=102  Identities=11%  Similarity=0.015  Sum_probs=64.7

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           68 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        68 ~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ..++.+||-.|.  |.|..++.+|+..  +.+|++++.+++..+.+++.+...+...   ++.....++....... ...
T Consensus      1665 l~~Ge~VLI~gaaGgVG~aAiqlAk~~--Ga~Viat~~s~~k~~~l~~~~~~lga~~---v~~~~~~~~~~~i~~~-t~g 1738 (2512)
T 2vz8_A         1665 MQPGESVLIHSGSGGVGQAAIAIALSR--GCRVFTTVGSAEKRAYLQARFPQLDETC---FANSRDTSFEQHVLRH-TAG 1738 (2512)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTCCSTT---EEESSSSHHHHHHHHT-TTS
T ss_pred             CCCCCEEEEEeCChHHHHHHHHHHHHc--CCEEEEEeCChhhhHHHHhhcCCCCceE---EecCCCHHHHHHHHHh-cCC
Confidence            446678998864  5777788888876  4699999999888777776432233322   2222222222222111 113


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ..+|+|+-...    ...+...+++|+++|.++.
T Consensus      1739 ~GvDvVld~~g----~~~l~~~l~~L~~~Gr~V~ 1768 (2512)
T 2vz8_A         1739 KGVDLVLNSLA----EEKLQASVRCLAQHGRFLE 1768 (2512)
T ss_dssp             CCEEEEEECCC----HHHHHHHHTTEEEEEEEEE
T ss_pred             CCceEEEECCC----chHHHHHHHhcCCCcEEEE
Confidence            47999985432    4668888999999998876

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=86.57  E-value=6.1  Score=28.02  Aligned_cols=86  Identities=13%  Similarity=0.076  Sum_probs=51.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe-cchhHHHHHHHhcccCCCC
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~l~~~~~~~~~~~~  147 (238)
                      .+++|+-||+  |..+..++..+.. +.+|+.+|.+++..+...+.+   +    +.... .+..+.   +       ..
T Consensus        20 ~~~~v~iiG~--G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~---~----~~~~~~~~~~~~---~-------~~   80 (144)
T 3oj0_A           20 GGNKILLVGN--GMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKY---E----YEYVLINDIDSL---I-------KN   80 (144)
T ss_dssp             CCCEEEEECC--SHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHH---T----CEEEECSCHHHH---H-------HT
T ss_pred             cCCEEEEECC--CHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHh---C----CceEeecCHHHH---h-------cC
Confidence            4789999998  7777787777642 356999999988765543332   3    23222 222222   2       46


Q ss_pred             eeEEEEcCCccchHHHHHHHHhccCCCeEEE
Q 026461          148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAV  178 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv  178 (238)
                      .|+|+...+.....  +.  ...+++|++++
T Consensus        81 ~Divi~at~~~~~~--~~--~~~l~~g~~vi  107 (144)
T 3oj0_A           81 NDVIITATSSKTPI--VE--ERSLMPGKLFI  107 (144)
T ss_dssp             CSEEEECSCCSSCS--BC--GGGCCTTCEEE
T ss_pred             CCEEEEeCCCCCcE--ee--HHHcCCCCEEE
Confidence            79998764332211  11  25678866554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	238
d1susa1	227	c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransfera	8e-71
d2avda1	219	c.66.1.1 (A:44-262) COMT domain-containing protein	6e-52
d2cl5a1	214	c.66.1.1 (A:3-216) Catechol O-methyltransferase, C	7e-37
d2bm8a1	232	c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI	3e-10
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	4e-05
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	5e-05
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	1e-04
d1zx0a1	229	c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe	3e-04
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	5e-04

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  214 bits (545), Expect = 8e-71
 Identities = 136/226 (60%), Positives = 180/226 (79%)

Query: 12  KGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNA 71
           K LLQS+ LY+YILETSV+PRE E +K++R+VTA HPW +M T+ D GQ ++MLL+L+NA
Sbjct: 1   KSLLQSDALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINA 60

Query: 72  KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 131
           K T+EIGV+TGYSLL TAL IPEDG+I A+D+N+E YE+GLP+IKKAGVDHKI+F E  A
Sbjct: 61  KNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA 120

Query: 132 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVP 191
           L VLD+++K  +N GS+D+ FVDADKDNY NYH+RL+ L+KVGG+  YDNTLW G+V  P
Sbjct: 121 LPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAP 180

Query: 192 EEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237
            +     +    R  +L+LN++LA DPR+++  + +GDGITICRRI
Sbjct: 181 PDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRRI 226

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 219

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  165 bits (419), Expect = 6e-52
 Identities = 80/222 (36%), Positives = 125/222 (56%), Gaps = 9/222 (4%)

Query: 16  QSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTI 75
           +   L++Y+L  S+  RE   L+ +R +T + P        +  QL+A L RL+ AKK +
Sbjct: 7   EDSRLWQYLLSRSM--REHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKAL 64

Query: 76  EIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 135
           ++G FTGYS L  AL +P DG++   +V+ +  E+G P+ ++A  +HKI+     AL  L
Sbjct: 65  DLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETL 124

Query: 136 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQV 195
           D+LL  +   G+FD A VDADK+N   Y+ER ++LL+ GGI      LW G V  P +  
Sbjct: 125 DELLA-AGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGD 183

Query: 196 PDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237
                    + + +LN  +  D RV +S + LGDG+T+  +I
Sbjct: 184 VAA------ECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI 219

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 214

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  126 bits (318), Expect = 7e-37
 Identities = 41/218 (18%), Positives = 86/218 (39%), Gaps = 17/218 (7%)

Query: 18  EDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEI 77
           + + RY+ + +  P +P+ + +  D         M      GQ+M  ++R  +    +E+
Sbjct: 5   QRILRYVQQNA-KPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLEL 63

Query: 78  GVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ 137
           G + GYS +  A  +    ++  +++N +   I   ++  AG+  K+  +   +  ++ Q
Sbjct: 64  GAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQ 123

Query: 138 LLKYSENEGSFDYAFVDADKDNYCNYHERL--MKLLKVGGIAVYDNTLWGGTVAVPEEQV 195
            LK   +  + D  F+D  KD Y      L    LL+ G + + DN +  GT        
Sbjct: 124 -LKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDF----- 177

Query: 196 PDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITI 233
                      +   +          L ++ + DG+  
Sbjct: 178 --------LAYVRGSSSFECTHYSSYLEYMKVVDGLEK 207

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} Length = 232

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

 Score = 56.3 bits (135), Expect = 3e-10
 Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 14/136 (10%)

Query: 56  PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTA---LTIPEDGQITAIDVNRETYEIGL 112
           PD   +   +L  +  +  +E+GV+ G SL         +  D Q+  ID +    +I  
Sbjct: 66  PDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQI-- 123

Query: 113 PIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHER-LMKLL 171
                      +  I        D        E +    F+D    N  N  +  +  LL
Sbjct: 124 -------PASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLL 176

Query: 172 KVGG-IAVYDNTLWGG 186
           + G    + D   +  
Sbjct: 177 EEGDYFIIEDMIPYWY 192

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 4e-05
 Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 8/130 (6%)

Query: 56  PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII 115
           P    ++  ++ +      +E G  +G   L  +  +   G++ + +V ++ +++     
Sbjct: 84  PKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNY 143

Query: 116 KKAGVDHKINFIESEALSVLDQL-----LKYSENEGSFDYAFVDADKDNYCNYHERLMKL 170
           K      K++ +E    +V                 +FD   +D    N           
Sbjct: 144 KHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDM--LNPHVTLPVFYPH 201

Query: 171 LKVGG-IAVY 179
           LK GG  AVY
Sbjct: 202 LKHGGVCAVY 211

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 40.6 bits (94), Expect = 5e-05
 Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 10/125 (8%)

Query: 54  TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLP 113
           TA +   L+  L         +++G  TG    +T        ++ AID N E       
Sbjct: 17  TAMEVRCLIMCLAEPGKNDVAVDVGCGTGG---VTLELAGRVRRVYAIDRNPEAISTTEM 73

Query: 114 IIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV 173
            +++ G+   +  +E +A   L ++          D A V             +   LK 
Sbjct: 74  NLQRHGLGDNVTLMEGDAPEALCKI-------PDIDIAVVGGSGGELQEILRIIKDKLKP 126

Query: 174 GGIAV 178
           GG  +
Sbjct: 127 GGRII 131

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 9/125 (7%)

Query: 56  PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII 115
            DA Q++     +    + +E G  +G   L     +   GQ+ + +   +  E     +
Sbjct: 83  KDAAQIV-HEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNV 141

Query: 116 KKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGG 175
                    N+       V+  L      +GS D A +D          + + +LL  GG
Sbjct: 142 SGCYGQPPDNWRL-----VVSDLADSELPDGSVDRAVLDM--LAPWEVLDAVSRLLVAGG 194

Query: 176 -IAVY 179
            + VY
Sbjct: 195 VLMVY 199

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 3e-04
 Identities = 18/154 (11%), Positives = 46/154 (29%), Gaps = 6/154 (3%)

Query: 60  QLMAMLLRLVNA--KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK 117
             M  L    ++   + +E+G     +   + +      +   I+ N   ++       +
Sbjct: 41  PYMHALAAAASSKGGRVLEVGFGMAIAA--SKVQEAPIDEHWIIECNDGVFQRLRDWAPR 98

Query: 118 AGVDHKINFIESEALSVLDQLLKYSEN-EGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 176
                       E ++       +      ++  +        +        +LLK GG+
Sbjct: 99  QTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGV 158

Query: 177 AVYDNTLWGGTVAVPEEQ-VPDHFRGSSRQAILD 209
             Y N    G +   +   +   F  +   A+L+
Sbjct: 159 LTYCNLTSWGELMKSKYSDITIMFEETQVPALLE 192

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 38.1 bits (88), Expect = 5e-04
 Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 11/123 (8%)

Query: 56  PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII 115
            DA   + M   L      +E+GV +G         +   G +T ++ + +  +  +  +
Sbjct: 72  IDASY-IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNL 130

Query: 116 KKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGG 175
            +      +    S+    +              Y  V AD  +  N+ +++  ++K G 
Sbjct: 131 SEFYDIGNVRTSRSDIADFISD----------QMYDAVIADIPDPWNHVQKIASMMKPGS 180

Query: 176 IAV 178
           +A 
Sbjct: 181 VAT 183

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	238
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	100.0
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	100.0
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	100.0
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.81
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.79
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.73
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.73
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.72
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.72
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.71
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.71
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.7
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.69
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.69
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.68
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.67
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.66
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.65
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.65
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.64
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.63
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.63
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.63
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.62
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.62
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.62
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.62
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.61
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.61
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.61
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.6
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.6
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.6
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.6
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.6
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.59
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.59
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.58
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.58
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.56
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.56
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.56
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.56
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.55
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.54
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.53
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.53
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.53
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.53
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.53
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.52
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	99.51
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.49
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.49
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.46
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.45
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	99.43
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	99.41
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.41
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.41
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	99.4
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	99.39
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.39
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.38
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	99.38
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.37
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	99.36
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.36
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	99.35
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.35
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	99.35
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.35
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.34
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.28
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	99.26
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.22
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.22
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	99.21
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.17
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.17
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.16
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	99.06
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.02
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.96
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.95
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.86
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.77
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.75
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.74
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.73
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.71
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.67
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.62
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.62
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.54
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.52
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.41
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.34
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	98.21
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	98.0
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.96
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.86
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.85
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.85
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.84
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.79
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.73
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.69
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.59
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.56
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.53
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.44
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.4
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.36
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.23
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.23
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	97.23
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.22
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.98
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.97
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.97
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	96.87
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.71
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.33
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.27
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.26
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	96.22
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	96.22
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	96.17
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.96
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	95.74
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.71
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	95.7
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	95.54
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	95.36
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	95.26
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	95.24
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.24
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	95.21
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	95.16
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	95.05
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	94.97
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	94.93
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	94.89
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	94.64
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	94.57
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	94.41
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	94.14
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	93.7
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	92.73
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	92.41
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	92.37
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	92.36
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	92.19
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	91.71
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	91.45
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	91.15
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	91.11
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	90.98
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	90.91
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	90.79
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	90.69
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	90.63
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	90.52
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	90.34
d2b4aa1	118	Hypothetical protein BH3024 {Bacillus halodurans [	90.33
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	90.3
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	90.15
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	90.09
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	89.24
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	88.96
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	88.7
d2r25b1	128	Response regulator Sin1 {Baker's yeast (Saccharomy	88.69
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	88.55
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	88.53
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	88.38
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	88.36
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	88.29
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	88.09
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	87.98
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	87.89
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	87.75
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	87.65
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	87.64
d1peya_	119	Sporulation response regulator Spo0F {Bacillus sub	87.5
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	87.38
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	87.33
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	87.12
d1dcfa_	134	Receiver domain of the ethylene receptor {Thale cr	86.85
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	86.71
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	86.67
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	86.41
d1kgsa2	122	PhoB receiver domain {Thermotoga maritima [TaxId:	86.17
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	86.14
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	86.12
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	85.83
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	85.76
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	85.66
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	85.61
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	85.39
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	85.09
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	84.76
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	84.64
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	83.78
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	83.56
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	83.5
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	83.45
d1xhfa1	121	Aerobic respiration control protein ArcA, N-termin	83.4
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	83.32
d1krwa_	123	NTRC receiver domain {Salmonella typhimurium [TaxI	83.06
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	83.0
d1ny5a1	137	Transcriptional activator sigm54 (NtrC1), N-termin	82.91
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	82.65
d1qkka_	140	Transcriptional regulatory protein DctD, receiver	82.54
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	82.13
d1dz3a_	123	Sporulation response regulator Spo0A {Bacillus ste	82.0
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	82.0
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	81.81
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	81.39
d1mvoa_	121	PhoP receiver domain {Bacillus subtilis [TaxId: 14	81.39
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	81.37
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	81.35
d1zgza1	120	TorCAD operon transcriptional regulator TorD, N-te	81.32
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	81.2
d2a9pa1	117	DNA-binding response regulator MicA, N-terminal do	81.15
d1ys7a2	121	Transcriptional regulatory protein PrrA, N-termina	81.11
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	81.0
d1p6qa_	129	CheY protein {Sinorhizobium meliloti, CheY2 [TaxId	80.96
d1zesa1	121	PhoB receiver domain {Escherichia coli [TaxId: 562	80.87
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	80.76
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	80.74
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	80.74
d1yioa2	128	Response regulatory protein StyR, N-terminal domai	80.46
d1w25a1	139	Response regulator PleD, receiver domain {Caulobac	80.4
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	80.3
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	80.02

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=1.2e-45  Score=296.28  Aligned_cols=226  Identities=61%  Similarity=1.050  Sum_probs=207.1

Q ss_pred             cCCCCcHHHHHHHHhccCCCCCChHHHHHHHHHhcCCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhh
Q 026461           12 KGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALT   91 (238)
Q Consensus        12 ~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~   91 (238)
                      |++..++.+++|+.+|+.+|.+++.++++++.+.+++++.|.+.+..+++|+.+++..++++||||||++|++|++||++
T Consensus         1 k~~~~~~~l~~Yi~~~s~~~~~~~~l~~l~~~~~~~~~~~m~~~~~~g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~a   80 (227)
T d1susa1           1 KSLLQSDALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALA   80 (227)
T ss_dssp             CCSBSCHHHHHHHHHHHTSSSCTTHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHH
T ss_pred             CCccccHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcccccCHHHHHHHHHHHHhcCCCcEEEecchhhhhHHHHHhh
Confidence            45678999999999998889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhcc
Q 026461           92 IPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL  171 (238)
Q Consensus        92 ~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L  171 (238)
                      ++++++|+++|.+++.++.|++++.+.|+.++++++.+++.+.++++..+....++||+||+|+++..+..+++.+.++|
T Consensus        81 l~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll  160 (227)
T d1susa1          81 IPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLV  160 (227)
T ss_dssp             SCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBSEEEECSCSTTHHHHHHHHHHHB
T ss_pred             CCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCceeEEEeccchhhhHHHHHHHHhhc
Confidence            99889999999999999999999999999999999999999999998655334678999999999999999999999999


Q ss_pred             CCCeEEEEeccccCccccCCCCCCCCC-cccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEcC
Q 026461          172 KVGGIAVYDNTLWGGTVAVPEEQVPDH-FRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF  238 (238)
Q Consensus       172 ~~gG~lv~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~~  238 (238)
                      +|||+|++||++|+|.+.+|.....+. .|. ....+++|++++.+||+++++++|++||+.|++|.+
T Consensus       161 ~~gGiii~DNvl~~G~v~~~~~~~~~~~~~~-~~~~i~~~n~~i~~d~r~~~~llPigDGl~i~~K~~  227 (227)
T d1susa1         161 KVGGVIGYDNTLWNGSVVAPPDAPLRKYVRY-YRDFVLELNKALAVDPRIEICMLPVGDGITICRRIK  227 (227)
T ss_dssp             CTTCCEEEETTTGGGGGGCCTTCCCCHHHHH-HHHHHHHHHHHHHHCTTBCCEEECSTTCEEEECBCC
T ss_pred             CCCcEEEEccCCCCCcccCCcccchHHHHHH-HHHHHHHHHHHHhcCCCEEEEEeecCCeeEEEEECC
Confidence            999999999999999998886543332 233 456799999999999999999999999999999975

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-42  Score=276.44  Aligned_cols=214  Identities=37%  Similarity=0.618  Sum_probs=196.5

Q ss_pred             CCcHHHHHHHHhccCCCCCChHHHHHHHHHhcCCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC
Q 026461           15 LQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE   94 (238)
Q Consensus        15 ~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~   94 (238)
                      +.++++++|+.+|+  +.+++.++++++.+.+++++.+.+.+..+++|..+++..++++|||||||+|++|+++|+++++
T Consensus         6 ~~~~~l~~Y~~~~~--~~~~~~l~~l~~~t~~~~~~~~~i~~~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~   83 (219)
T d2avda1           6 PEDSRLWQYLLSRS--MREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPA   83 (219)
T ss_dssp             CTTSHHHHHHHHTT--CCCCHHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCT
T ss_pred             CCcHHHHHHHHHhC--CCCCHHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCC
Confidence            35688999999975  5778899999999998888888899999999999999999999999999999999999999988


Q ss_pred             CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCC
Q 026461           95 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG  174 (238)
Q Consensus        95 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~g  174 (238)
                      +++|+++|++++..+.|++++...|+.++++++.+|+.+.++.+..+ ...++||+||+|+.+..+..+++.+.++|+||
T Consensus        84 ~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~-~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~G  162 (219)
T d2avda1          84 DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAA-GEAGTFDVAVVDADKENCSAYYERCLQLLRPG  162 (219)
T ss_dssp             TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHT-TCTTCEEEEEECSCSTTHHHHHHHHHHHEEEE
T ss_pred             CceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhh-cccCCccEEEEeCCHHHHHHHHHHHHHHhcCC
Confidence            89999999999999999999999999999999999999988876543 23578999999999999999999999999999


Q ss_pred             eEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEc
Q 026461          175 GIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  237 (238)
Q Consensus       175 G~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~  237 (238)
                      |+|++||++|+|.+.++....+      .+.++++|++++.+||+|+++++|++||+.|++|.
T Consensus       163 Gvii~Dn~l~~G~v~~~~~~d~------~~~~ir~~~~~i~~d~r~~~~llPigdGl~ia~Kl  219 (219)
T d2avda1         163 GILAVLRVLWRGKVLQPPKGDV------AAECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI  219 (219)
T ss_dssp             EEEEEECCSGGGGGGSCCTTCH------HHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             cEEEEeCCcccCcccCcccCCH------HHHHHHHHHHHHHhCCCEEEEEeecCCeeEEEEeC
Confidence            9999999999999998754321      67789999999999999999999999999999984

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.1e-32  Score=219.30  Aligned_cols=199  Identities=22%  Similarity=0.388  Sum_probs=168.8

Q ss_pred             CcHHHHHHHHhccCCCCCC-hHHHHHHHHHhcCCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC
Q 026461           16 QSEDLYRYILETSVYPREP-EPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE   94 (238)
Q Consensus        16 ~~~~~~~y~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~   94 (238)
                      .+.++++|+.+|+ .+.++ ..++.+.+++.+..+. |.+.++.+++|..+++..+|++|||||||+|++|++|++++++
T Consensus         3 ~~~~~~~yv~~~~-~~~~p~~vl~~~~~~~~~~~~~-m~i~~~~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~   80 (214)
T d2cl5a1           3 KEQRILRYVQQNA-KPGDPQSVLEAIDTYCTQKEWA-MNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQP   80 (214)
T ss_dssp             HHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHHTCCC-CSCHHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCT
T ss_pred             HHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCc-cccCHHHHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCC
Confidence            4678999999987 44443 4678888887766544 6799999999999999999999999999999999999999987


Q ss_pred             CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHH--HHHHHhccC
Q 026461           95 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNY--HERLMKLLK  172 (238)
Q Consensus        95 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~--~~~~~~~L~  172 (238)
                      +++|+++|+++++++.|++++...|+.++|+++.+|+.+.++.+... ...++||+||+|+++..+...  +..++++|+
T Consensus        81 ~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~-~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLk  159 (214)
T d2cl5a1          81 GARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKK-YDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLR  159 (214)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHH-SCCCCEEEEEECSCGGGHHHHHHHHHHTTCEE
T ss_pred             ccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhc-ccccccceeeecccccccccHHHHHHHhCccC
Confidence            89999999999999999999999999999999999999988776543 235689999999988887664  555678999


Q ss_pred             CCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEe-------eecCCeeEEEEEc
Q 026461          173 VGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSH-------VALGDGITICRRI  237 (238)
Q Consensus       173 ~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------lp~~~G~~i~~~~  237 (238)
                      |||+|++||++|+|                    ..+++++++.++++.+..       +|++||++++..+
T Consensus       160 pGGvIv~Ddvl~~g--------------------~~~~~~~vr~~~~~~~~~~~~~~~~~~~~dgl~~s~~~  211 (214)
T d2cl5a1         160 KGTVLLADNVIVPG--------------------TPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQ  211 (214)
T ss_dssp             EEEEEEESCCCCCC--------------------CHHHHHHHHHCTTEEEEEEEEECTTSSSEEEEEEEEEC
T ss_pred             CCcEEEEeCcCCCC--------------------ChHHHHHHhccCceeehhhhhcceecccCCceEEEEec
Confidence            99999999999977                    235777788888887654       6899999998753

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.81  E-value=8.6e-19  Score=135.60  Aligned_cols=120  Identities=22%  Similarity=0.212  Sum_probs=104.0

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      ...+...++-.++...+..+|||||||+|..++.+|..   ..+|+++|+++++++.|++|++.+++.++++++++|+.+
T Consensus        17 t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~---~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~   93 (186)
T d1l3ia_          17 TAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE   93 (186)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH
T ss_pred             ChHHHHHHHHHhcCCCCCCEEEEEECCeEccccccccc---ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhh
Confidence            45556555555677888899999999999999999875   459999999999999999999999998899999999987


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      .+..       ...||+||++........+++.+.+.|+|||.+++....
T Consensus        94 ~~~~-------~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~  136 (186)
T d1l3ia_          94 ALCK-------IPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAIL  136 (186)
T ss_dssp             HHTT-------SCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred             cccc-------cCCcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEeec
Confidence            7543       489999999988888899999999999999999987543

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=4.7e-19  Score=142.74  Aligned_cols=124  Identities=19%  Similarity=0.225  Sum_probs=105.1

Q ss_pred             cCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           53 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      ...+.....+..++...++.+|||||||+|..+..+++..+  .+|+|||+|+.+++.|+++....|+.++++|.++|+.
T Consensus        16 p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~--~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~   93 (245)
T d1nkva_          16 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAA   93 (245)
T ss_dssp             SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCT
T ss_pred             CCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcC--CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHh
Confidence            34566666677777788889999999999999999998753  6999999999999999999999999999999999998


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcC---CccchHHHHHHHHhccCCCeEEEEeccccCc
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWGG  186 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (238)
                      +..+        .++||+|++..   ...+...+++++.+.|||||.+++.+..+..
T Consensus        94 ~~~~--------~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~  142 (245)
T d1nkva_          94 GYVA--------NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQ  142 (245)
T ss_dssp             TCCC--------SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETT
T ss_pred             hccc--------cCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccC
Confidence            7622        58999999764   3446789999999999999999998776544

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.73  E-value=2.1e-17  Score=131.95  Aligned_cols=115  Identities=17%  Similarity=0.218  Sum_probs=97.1

Q ss_pred             hHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHH
Q 026461           57 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD  136 (238)
Q Consensus        57 ~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~  136 (238)
                      ....++...+...+..+|||||||+|..+..+++..   ++|+|+|+|+.+++.|++++...++ +++.++++|+.+. +
T Consensus         3 ~~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~-~~~~~~~~d~~~~-~   77 (234)
T d1xxla_           3 HSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESL-P   77 (234)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBC-C
T ss_pred             hHHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhccccc-ccccccccccccc-c
Confidence            345677778888899999999999999999999864   5899999999999999999998887 4599999999774 2


Q ss_pred             HHHhcccCCCCeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEecc
Q 026461          137 QLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       137 ~~~~~~~~~~~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                            ++.++||+|++...   ..+...+++++.+.|+|||.+++.+.
T Consensus        78 ------~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~  120 (234)
T d1xxla_          78 ------FPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDH  120 (234)
T ss_dssp             ------SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ------ccccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEc
Confidence                  23689999998754   34578899999999999999888654

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.73  E-value=3e-17  Score=132.89  Aligned_cols=123  Identities=15%  Similarity=0.139  Sum_probs=104.5

Q ss_pred             CCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc--CCCCcEEE
Q 026461           49 WAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GVDHKINF  126 (238)
Q Consensus        49 ~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~~~~v~~  126 (238)
                      .....+.+....++-.++...++.+|||+|||+|..|.+||..+.+.++|+++|+++++++.|+++++..  +...++++
T Consensus        75 r~tqiiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~  154 (264)
T d1i9ga_          75 RGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRL  154 (264)
T ss_dssp             SCSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEE
T ss_pred             CCccccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEE
Confidence            3445678888888888999999999999999999999999999877999999999999999999999875  33468999


Q ss_pred             EecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          127 IESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       127 ~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      .++|+.+.  .     ...++||.||+|.+  +....+..+.+.|||||.+++-
T Consensus       155 ~~~d~~~~--~-----~~~~~fDaV~ldlp--~P~~~l~~~~~~LkpGG~lv~~  199 (264)
T d1i9ga_         155 VVSDLADS--E-----LPDGSVDRAVLDML--APWEVLDAVSRLLVAGGVLMVY  199 (264)
T ss_dssp             ECSCGGGC--C-----CCTTCEEEEEEESS--CGGGGHHHHHHHEEEEEEEEEE
T ss_pred             Eecccccc--c-----ccCCCcceEEEecC--CHHHHHHHHHhccCCCCEEEEE
Confidence            99998764  1     23689999999853  4457788999999999999874

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.72  E-value=2.4e-17  Score=134.01  Aligned_cols=121  Identities=20%  Similarity=0.264  Sum_probs=105.7

Q ss_pred             CCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec
Q 026461           50 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES  129 (238)
Q Consensus        50 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~  129 (238)
                      ....+.|....++-.++...++.+|||+|||+|+.|.+||+.+.+.++|+++|+++++++.|+++++..++.+++.+...
T Consensus        83 ~~qiiypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~  162 (266)
T d1o54a_          83 RTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVR  162 (266)
T ss_dssp             -CCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECC
T ss_pred             CccccchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEec
Confidence            34567888888888899999999999999999999999999987789999999999999999999999999888999999


Q ss_pred             chhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          130 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       130 d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      |..+.+        ....||.||+|.+  +...+++.+.+.|||||.+++-
T Consensus       163 d~~~~~--------~~~~~D~V~~d~p--~p~~~l~~~~~~LKpGG~lv~~  203 (266)
T d1o54a_         163 DISEGF--------DEKDVDALFLDVP--DPWNYIDKCWEALKGGGRFATV  203 (266)
T ss_dssp             CGGGCC--------SCCSEEEEEECCS--CGGGTHHHHHHHEEEEEEEEEE
T ss_pred             cccccc--------cccceeeeEecCC--CHHHHHHHHHhhcCCCCEEEEE
Confidence            875532        2578999999853  5567889999999999999873

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.72  E-value=6e-18  Score=136.13  Aligned_cols=117  Identities=13%  Similarity=0.201  Sum_probs=92.7

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      +.+.....+-..+...++.+|||+|||+|..|.+||+.+.+.++|+++|+++++++.|+++++..+...++++..+|..+
T Consensus        69 iypkD~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~  148 (250)
T d1yb2a1          69 ISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD  148 (250)
T ss_dssp             ------------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT
T ss_pred             cCHHHHHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeec
Confidence            44555555556677888899999999999999999998876899999999999999999999998777889999999877


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      .++        +..||.||+|..  ....+++.+.+.|||||++++.
T Consensus       149 ~~~--------~~~fD~V~ld~p--~p~~~l~~~~~~LKpGG~lv~~  185 (250)
T d1yb2a1         149 FIS--------DQMYDAVIADIP--DPWNHVQKIASMMKPGSVATFY  185 (250)
T ss_dssp             CCC--------SCCEEEEEECCS--CGGGSHHHHHHTEEEEEEEEEE
T ss_pred             ccc--------cceeeeeeecCC--chHHHHHHHHHhcCCCceEEEE
Confidence            633        578999999854  3457788999999999999973

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.71  E-value=3.3e-17  Score=130.20  Aligned_cols=114  Identities=14%  Similarity=0.266  Sum_probs=93.0

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHH
Q 026461           58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ  137 (238)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~  137 (238)
                      .++++.. +...++.+|||||||+|..+..+++..   .+|+|+|+|+++++.|++++...+. +++++.++|+.+. + 
T Consensus         4 ~~~ll~~-~~l~~~~rVLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~i~~A~~~~~~~~~-~~i~~~~~d~~~l-~-   76 (231)
T d1vl5a_           4 LAKLMQI-AALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQM-P-   76 (231)
T ss_dssp             HHHHHHH-HTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CC-C-
T ss_pred             HHHHHHh-cCCCCcCEEEEecccCcHHHHHHHHhC---CEEEEEECCHHHHhhhhhccccccc-ccccccccccccc-c-
Confidence            3445553 567788999999999999999999863   5899999999999999999998887 4699999998775 1 


Q ss_pred             HHhcccCCCCeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          138 LLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       138 ~~~~~~~~~~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      +     +.++||+|++...   ..+...+++++.++|+|||++++.+..
T Consensus        77 ~-----~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~  120 (231)
T d1vl5a_          77 F-----TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS  120 (231)
T ss_dssp             S-----CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             c-----cccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            1     2589999998754   345678899999999999999886544

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.71  E-value=2.6e-17  Score=129.78  Aligned_cols=116  Identities=22%  Similarity=0.363  Sum_probs=94.2

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      +.|.....+-.++...++.+|||||||+|+.+..+++.+.+.++|+++|+++++++.|+++++..++. ++.++++|+.+
T Consensus        59 ~~P~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~-n~~~~~~d~~~  137 (213)
T d1dl5a1          59 SQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYY  137 (213)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGG
T ss_pred             ccchhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhccc-ccccccCchHH
Confidence            34554433444556788889999999999999999998877899999999999999999999998874 58889999877


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      .++.       .++||+|++.+..+..+   +.+.+.|+|||.|++.
T Consensus       138 ~~~~-------~~~fD~I~~~~~~~~~p---~~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         138 GVPE-------FSPYDVIFVTVGVDEVP---ETWFTQLKEGGRVIVP  174 (213)
T ss_dssp             CCGG-------GCCEEEEEECSBBSCCC---HHHHHHEEEEEEEEEE
T ss_pred             cccc-------ccchhhhhhhccHHHhH---HHHHHhcCCCcEEEEE
Confidence            5443       47899999998666554   3466789999999874

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=7.8e-17  Score=134.21  Aligned_cols=124  Identities=15%  Similarity=0.207  Sum_probs=100.2

Q ss_pred             CCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc----------
Q 026461           49 WAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA----------  118 (238)
Q Consensus        49 ~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~----------  118 (238)
                      .....+.+....++-.++...++.+|||+|||+|+.|.+||..+.+.++|+++|+++++++.|+++++..          
T Consensus        77 r~tqiiypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~  156 (324)
T d2b25a1          77 RGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVE  156 (324)
T ss_dssp             CSSCCCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSS
T ss_pred             CCCcccccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhh
Confidence            3445577888888888889999999999999999999999999877999999999999999999999864          


Q ss_pred             CCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          119 GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       119 ~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      +..+++.+.++|+.+....+.     ...||.||+|.+  .....+..+.+.|||||++++
T Consensus       157 ~~~~nv~~~~~di~~~~~~~~-----~~~fD~V~LD~p--~P~~~l~~~~~~LKpGG~lv~  210 (324)
T d2b25a1         157 EWPDNVDFIHKDISGATEDIK-----SLTFDAVALDML--NPHVTLPVFYPHLKHGGVCAV  210 (324)
T ss_dssp             CCCCCEEEEESCTTCCC------------EEEEEECSS--STTTTHHHHGGGEEEEEEEEE
T ss_pred             ccccceeEEecchhhcccccC-----CCCcceEeecCc--CHHHHHHHHHHhccCCCEEEE
Confidence            334689999999876544331     468999999854  234578889999999999886

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.69  E-value=5.7e-17  Score=132.98  Aligned_cols=108  Identities=13%  Similarity=0.202  Sum_probs=92.7

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++.+|||||||+|..+..|++..  +.+|+|+|+++.+++.|+++....|+.++++++++|+.++ +      .+.++
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l-~------~~~~s  135 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-P------CEDNS  135 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-S------SCTTC
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhcccccccccccccccccccccc-c------ccccc
Confidence            4567899999999999999999865  4699999999999999999999999999999999999775 1      13589


Q ss_pred             eeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEecccc
Q 026461          148 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       148 fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      ||+|++...   .++...+++.+.++|||||.+++.+...
T Consensus       136 fD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~  175 (282)
T d2o57a1         136 YDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMK  175 (282)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             cchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeec
Confidence            999998643   3456789999999999999999977654

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.69  E-value=7.4e-16  Score=124.20  Aligned_cols=115  Identities=20%  Similarity=0.261  Sum_probs=94.0

Q ss_pred             HhHHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH
Q 026461           56 PDAGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV  134 (238)
Q Consensus        56 ~~~~~~l~~l~~-~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (238)
                      +.+..++..+.. ..++++|||+|||+|..++.++..   +.+|+++|+|+.+++.|++|++.+++.  ++++++|..+.
T Consensus       105 ~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~---g~~V~gvDis~~av~~A~~na~~n~~~--~~~~~~d~~~~  179 (254)
T d2nxca1         105 ETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAA  179 (254)
T ss_dssp             HHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHH
T ss_pred             chhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhc---CCEEEEEECChHHHHHHHHHHHHcCCc--eeEEecccccc
Confidence            344555555554 346779999999999999988863   468999999999999999999999874  57889987654


Q ss_pred             HHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          135 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       135 l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ++        .++||+|+.+........+++.+.+.|||||.+++++++
T Consensus       180 ~~--------~~~fD~V~ani~~~~l~~l~~~~~~~LkpGG~lilSgil  220 (254)
T d2nxca1         180 LP--------FGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             GG--------GCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cc--------ccccchhhhccccccHHHHHHHHHHhcCCCcEEEEEecc
Confidence            32        479999999876667788889999999999999998765

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5.2e-17  Score=128.91  Aligned_cols=117  Identities=19%  Similarity=0.269  Sum_probs=94.3

Q ss_pred             cCcHhH-HHHHHHHH-hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCC----CcEEE
Q 026461           53 GTAPDA-GQLMAMLL-RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD----HKINF  126 (238)
Q Consensus        53 ~~~~~~-~~~l~~l~-~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~----~~v~~  126 (238)
                      .+.|.. +.++..|. ...++.+|||||||+|+.|..+++...+.++|+++|+++++++.|++++.+.++.    .++.+
T Consensus        57 is~P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~  136 (224)
T d1i1na_          57 ISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQL  136 (224)
T ss_dssp             ECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEE
T ss_pred             hhhhHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEE
Confidence            445544 55665554 3567789999999999999999998776899999999999999999999887653    56899


Q ss_pred             EecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          127 IESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       127 ~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ..+|+....+.       ..+||.|++.+.....+   +.+.+.|||||.+|+
T Consensus       137 ~~gD~~~~~~~-------~~~fD~I~~~~~~~~ip---~~l~~~LkpGG~LV~  179 (224)
T d1i1na_         137 VVGDGRMGYAE-------EAPYDAIHVGAAAPVVP---QALIDQLKPGGRLIL  179 (224)
T ss_dssp             EESCGGGCCGG-------GCCEEEEEECSBBSSCC---HHHHHTEEEEEEEEE
T ss_pred             EEeecccccch-------hhhhhhhhhhcchhhcC---HHHHhhcCCCcEEEE
Confidence            99998775443       47999999998665554   356789999999997

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.67  E-value=2.8e-16  Score=121.99  Aligned_cols=110  Identities=15%  Similarity=0.185  Sum_probs=90.1

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCC-cEEEEecchhHHHHH
Q 026461           59 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQ  137 (238)
Q Consensus        59 ~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~l~~  137 (238)
                      .++|...+...++++|||+|||+|..++.++...+   +|+++|+++.+++.+++++..+++.+ ++++..+|..+.++ 
T Consensus        41 t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~---~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~-  116 (194)
T d1dusa_          41 TKILVENVVVDKDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK-  116 (194)
T ss_dssp             HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT-
T ss_pred             HHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhcc---ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhc-
Confidence            44454555667788999999999999999998654   89999999999999999999998864 69999999876432 


Q ss_pred             HHhcccCCCCeeEEEEcCCccc----hHHHHHHHHhccCCCeEEEE
Q 026461          138 LLKYSENEGSFDYAFVDADKDN----YCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       138 ~~~~~~~~~~fD~V~~d~~~~~----~~~~~~~~~~~L~~gG~lv~  179 (238)
                             +++||+|+++.+...    ...+++.+.++|+|||.+++
T Consensus       117 -------~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i  155 (194)
T d1dusa_         117 -------DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWV  155 (194)
T ss_dssp             -------TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             -------cCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEE
Confidence                   579999999865332    35678888899999998876

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.66  E-value=4.6e-16  Score=116.17  Aligned_cols=113  Identities=19%  Similarity=0.226  Sum_probs=92.3

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHH
Q 026461           60 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL  139 (238)
Q Consensus        60 ~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~  139 (238)
                      .++..+....++++|||+|||+|..++..+..-  ..+|+++|.++.+++.+++++...+..++++++++|+.+.++.. 
T Consensus         4 ~~fn~l~~~~~g~~vlDl~~GtG~~~iea~~rg--a~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~-   80 (152)
T d2esra1           4 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRG--MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL-   80 (152)
T ss_dssp             HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTT--CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB-
T ss_pred             HHHHHHHhhCCCCeEEEcCCccCHHHHHHHHhC--cceeeeehhchhhhhhhhhhhhhcccccchhhhccccccccccc-
Confidence            344445445678999999999999999887753  35999999999999999999999999899999999999887654 


Q ss_pred             hcccCCCCeeEEEEcCCc--cchHHHHHHHH--hccCCCeEEEEe
Q 026461          140 KYSENEGSFDYAFVDADK--DNYCNYHERLM--KLLKVGGIAVYD  180 (238)
Q Consensus       140 ~~~~~~~~fD~V~~d~~~--~~~~~~~~~~~--~~L~~gG~lv~~  180 (238)
                           .++||+||+|.+-  ..+...++.+.  +.|+|+|+++++
T Consensus        81 -----~~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE  120 (152)
T d2esra1          81 -----TGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCE  120 (152)
T ss_dssp             -----CSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             -----ccccceeEechhhccchHHHHHHHHHHCCCcCCCeEEEEE
Confidence                 6899999999752  23455666554  579999999986

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.65  E-value=3e-16  Score=128.66  Aligned_cols=108  Identities=19%  Similarity=0.314  Sum_probs=91.1

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ...+|.+|||||||+|..+..++..++.+.+|+|+|+++.+++.|++++...+.  +++|.++|+.+.  .+      .+
T Consensus        24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~--~~------~~   93 (281)
T d2gh1a1          24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEI--EL------ND   93 (281)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTC--CC------SS
T ss_pred             ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--cccccccccccc--cc------cC
Confidence            456788999999999999999999888678999999999999999999988764  699999998764  11      46


Q ss_pred             CeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEecccc
Q 026461          147 SFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       147 ~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      +||+|++...   ..+....++.+.+.|||||.+++.+..|
T Consensus        94 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~  134 (281)
T d2gh1a1          94 KYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHW  134 (281)
T ss_dssp             CEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCH
T ss_pred             CceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECCc
Confidence            8999998864   3456788999999999999988866543

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.65  E-value=1.5e-15  Score=120.34  Aligned_cols=119  Identities=13%  Similarity=0.158  Sum_probs=94.3

Q ss_pred             HhHHHHHHHHHh--hcCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           56 PDAGQLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        56 ~~~~~~l~~l~~--~~~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      +...+++..++.  ..+..+|||+|||+|..+..+++.+. ++.+|+|+|+|+.+++.|++++...+...++.+..+|..
T Consensus        23 ~~~~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~  102 (225)
T d1im8a_          23 SNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIR  102 (225)
T ss_dssp             HHHHHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTT
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhh
Confidence            333444444443  34667999999999999999998753 478999999999999999999998887778999998876


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcCC-----ccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      +.         +.+.+|+|++...     ..+...+++++.+.|+|||.+++.+..
T Consensus       103 ~~---------~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~  149 (225)
T d1im8a_         103 HV---------EIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF  149 (225)
T ss_dssp             TC---------CCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cc---------ccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccccc
Confidence            54         1478899887632     345678999999999999999987654

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.64  E-value=6.1e-16  Score=124.19  Aligned_cols=101  Identities=18%  Similarity=0.326  Sum_probs=83.7

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++++|||||||+|..+..|++.   +.+|+|||+|+.+++.|++++...+.  +++++++|+.++.  +      .++
T Consensus        39 ~~~~~~iLDiGcGtG~~~~~l~~~---~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~--~------~~~  105 (251)
T d1wzna1          39 KREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIA--F------KNE  105 (251)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCC--C------CSC
T ss_pred             CCCCCEEEEeCCCCCccchhhccc---ceEEEEEeeccccccccccccccccc--cchheehhhhhcc--c------ccc
Confidence            345678999999999999999985   46899999999999999999988775  5899999998762  2      478


Q ss_pred             eeEEEEcCC------ccchHHHHHHHHhccCCCeEEEEec
Q 026461          148 FDYAFVDAD------KDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       148 fD~V~~d~~------~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ||+|++-..      .+....+++.+.++|+|||+++++-
T Consensus       106 fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~  145 (251)
T d1wzna1         106 FDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (251)
T ss_dssp             EEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            999997531      1234578899999999999999864

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.63  E-value=1.3e-15  Score=118.94  Aligned_cols=103  Identities=15%  Similarity=0.276  Sum_probs=88.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      ....|||||||+|.+++.+|...| +..++|+|+++.++..+.+.+.+.++. ++.++.+|+..++..+     ..+++|
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p-~~~~iGiD~~~~~i~~a~~~~~~~~l~-Nv~~~~~Da~~l~~~~-----~~~~~d  101 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVF-----EPGEVK  101 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHC-----CTTSCC
T ss_pred             CCceEEEEEecCcHHHHHHHHhCC-CCcEEEeecchHHHHHHHHHHHHHhcc-Cchhcccchhhhhccc-----Cchhhh
Confidence            345799999999999999999987 899999999999999999999999985 6999999998876554     368999


Q ss_pred             EEEEcCCccc-----------hHHHHHHHHhccCCCeEEEE
Q 026461          150 YAFVDADKDN-----------YCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       150 ~V~~d~~~~~-----------~~~~~~~~~~~L~~gG~lv~  179 (238)
                      .|++..+.+.           .+.+++.+.+.|||||.|.+
T Consensus       102 ~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i  142 (204)
T d2fcaa1         102 RVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHF  142 (204)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEE
T ss_pred             ccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEE
Confidence            9987643211           25799999999999999877

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.63  E-value=1.4e-15  Score=124.95  Aligned_cols=108  Identities=9%  Similarity=0.111  Sum_probs=92.5

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           66 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      +...++.+|||||||.|..++++|+..+  .+|+|+++|++.++.+++.+...|+.+++.+...|....          .
T Consensus        57 l~l~~G~~VLDiGCG~G~~~~~~a~~~g--~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~----------~  124 (291)
T d1kpia_          57 LNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF----------D  124 (291)
T ss_dssp             TCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC----------C
T ss_pred             cCCCCCCEEEEecCcchHHHHHHHHhcC--cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc----------c
Confidence            3466788999999999999999998764  699999999999999999999999999999999886432          5


Q ss_pred             CCeeEEEEcCCc------------cchHHHHHHHHhccCCCeEEEEeccccC
Q 026461          146 GSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNTLWG  185 (238)
Q Consensus       146 ~~fD~V~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~~~  185 (238)
                      ++||.|++-...            .+++.+++.+.++|+|||.++++.+...
T Consensus       125 ~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~  176 (291)
T d1kpia_         125 EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP  176 (291)
T ss_dssp             CCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECC
T ss_pred             cccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEecc
Confidence            899999975322            3468999999999999999999887643

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.63  E-value=2.9e-15  Score=125.04  Aligned_cols=110  Identities=23%  Similarity=0.306  Sum_probs=93.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .+.++|||+|||+|..++.++..-  ..+|+++|+++.+++.+++|+..+|+.++++++++|+.+.+..+...   ..+|
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~g--a~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~---~~~f  218 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAG--ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKK---GEKF  218 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHT---TCCE
T ss_pred             CCCCeeecccCcccchhhhhhhcC--CcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhc---cCCC
Confidence            357899999999999999998752  35899999999999999999999999889999999999987776543   5799


Q ss_pred             eEEEEcCCcc------------chHHHHHHHHhccCCCeEEEEeccc
Q 026461          149 DYAFVDADKD------------NYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       149 D~V~~d~~~~------------~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      |+|++|.+..            .+..++..+.++|+|||+|++..+.
T Consensus       219 D~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s  265 (324)
T d2as0a2         219 DIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  265 (324)
T ss_dssp             EEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             CchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            9999997532            3566778888999999999987644

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.62  E-value=1.7e-15  Score=121.54  Aligned_cols=109  Identities=16%  Similarity=0.180  Sum_probs=86.1

Q ss_pred             HHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHH
Q 026461           59 GQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD  136 (238)
Q Consensus        59 ~~~l~~l~~~--~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~  136 (238)
                      ..++..++..  .++++|||||||+|..+..|++.   +.+|+|+|+|+.+++.|++++...+.  +++++++|+.+.. 
T Consensus        24 ~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~---g~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~-   97 (246)
T d1y8ca_          24 SDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLN-   97 (246)
T ss_dssp             HHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCC-
T ss_pred             HHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHh---CCccEeeccchhhhhhccccccccCc--cceeeccchhhhc-
Confidence            3444444432  45679999999999999999986   45899999999999999999888775  5899999997751 


Q ss_pred             HHHhcccCCCCeeEEEEcCC-------ccchHHHHHHHHhccCCCeEEEEe
Q 026461          137 QLLKYSENEGSFDYAFVDAD-------KDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       137 ~~~~~~~~~~~fD~V~~d~~-------~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                       +      .++||+|++-..       ......+++.+.++|+|||.++++
T Consensus        98 -~------~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  141 (246)
T d1y8ca_          98 -I------NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             -C------SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             -c------cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence             2      479999997421       224456899999999999999974

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.62  E-value=1.6e-15  Score=124.14  Aligned_cols=105  Identities=9%  Similarity=0.141  Sum_probs=90.6

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ...++.+|||||||.|..+.++++..+  .+|+|+|+|++.++.|++.+...++..++.+...|..+.          .+
T Consensus        49 ~l~~g~~VLDiGCG~G~~a~~~a~~~g--~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~----------~~  116 (280)
T d2fk8a1          49 DLKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF----------AE  116 (280)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC----------CC
T ss_pred             CCCCCCEEEEecCCchHHHHHHHHhCc--eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh----------cc
Confidence            456778999999999999999998764  699999999999999999999999988899988887554          58


Q ss_pred             CeeEEEEcCC-----ccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          147 SFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       147 ~fD~V~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      +||.|++-..     ..+++.+|+.+.++|||||.++++.+.
T Consensus       117 ~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~  158 (280)
T d2fk8a1         117 PVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV  158 (280)
T ss_dssp             CCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             chhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEee
Confidence            9999987642     345688999999999999999998654

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=6.3e-16  Score=123.04  Aligned_cols=110  Identities=18%  Similarity=0.185  Sum_probs=88.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .++++|||||||+|.++.++++..+  .+|++||+++.+++.|++++...+  .++.++.+++......+     ..++|
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~-----~~~~f  122 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTL-----PDGHF  122 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGS-----CTTCE
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhhcc--ccccccccccccccccc-----ccccc
Confidence            3567999999999999999998643  589999999999999999987654  46888888887765544     25799


Q ss_pred             eEEEEcCCc--------cchHHHHHHHHhccCCCeEEEEeccccCcc
Q 026461          149 DYAFVDADK--------DNYCNYHERLMKLLKVGGIAVYDNTLWGGT  187 (238)
Q Consensus       149 D~V~~d~~~--------~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~  187 (238)
                      |.|++|...        .....+++.+.++|||||++++.+..+.+.
T Consensus       123 D~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~~~~~  169 (229)
T d1zx0a1         123 DGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGE  169 (229)
T ss_dssp             EEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHH
T ss_pred             cceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEEecCCcch
Confidence            999998532        224568888999999999999877665443

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.62  E-value=4.4e-15  Score=113.96  Aligned_cols=125  Identities=14%  Similarity=0.130  Sum_probs=102.5

Q ss_pred             CccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecc
Q 026461           51 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE  130 (238)
Q Consensus        51 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d  130 (238)
                      .|+.+...+.++..+.....+.+|||++||+|..++..+..-  ..+|++||.++.+++.+++|+...+..++++++++|
T Consensus        22 RPt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srG--a~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D   99 (182)
T d2fhpa1          22 RPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRG--MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMD   99 (182)
T ss_dssp             CCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESC
T ss_pred             CcCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecc--hhHHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Confidence            344555666666666556678999999999999999888753  358999999999999999999999988889999999


Q ss_pred             hhHHHHHHHhcccCCCCeeEEEEcCC--ccchHHHHHHHH--hccCCCeEEEEe
Q 026461          131 ALSVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLM--KLLKVGGIAVYD  180 (238)
Q Consensus       131 ~~~~l~~~~~~~~~~~~fD~V~~d~~--~~~~~~~~~~~~--~~L~~gG~lv~~  180 (238)
                      +.+.++.+...   ..+||+||+|.+  ...+...++.+.  .+|+++|+|+++
T Consensus       100 ~~~~l~~~~~~---~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E  150 (182)
T d2fhpa1         100 ANRALEQFYEE---KLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCE  150 (182)
T ss_dssp             HHHHHHHHHHT---TCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             chhhhhhhccc---CCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence            99988876443   568999999986  345677777775  479999999985

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.61  E-value=1.4e-15  Score=119.54  Aligned_cols=118  Identities=19%  Similarity=0.300  Sum_probs=96.3

Q ss_pred             CCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec
Q 026461           50 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES  129 (238)
Q Consensus        50 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~  129 (238)
                      +...+.|.....+-.++...+..+|||||||+||.|..++..+  +++|+++|.+++.++.|++++...++ .++.++++
T Consensus        58 g~~is~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~~~l~~~g~-~nv~~~~g  134 (215)
T d1jg1a_          58 GQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERAGV-KNVHVILG  134 (215)
T ss_dssp             TCEECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEES
T ss_pred             hhhhhhhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHHHHHHHcCC-ceeEEEEC
Confidence            3445677765555556678888999999999999999999865  36899999999999999999999997 46999999


Q ss_pred             chhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          130 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       130 d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      |+.+.++.       .++||.|++.+.....+.   .+.+.|++||.+++-
T Consensus       135 d~~~g~~~-------~~pfD~Iiv~~a~~~ip~---~l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         135 DGSKGFPP-------KAPYDVIIVTAGAPKIPE---PLIEQLKIGGKLIIP  175 (215)
T ss_dssp             CGGGCCGG-------GCCEEEEEECSBBSSCCH---HHHHTEEEEEEEEEE
T ss_pred             ccccCCcc-------cCcceeEEeecccccCCH---HHHHhcCCCCEEEEE
Confidence            99876544       489999999887666554   356789999999873

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.61  E-value=3.7e-15  Score=117.34  Aligned_cols=103  Identities=15%  Similarity=0.164  Sum_probs=84.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .+..+|||||||+|..+..+++.   +.+|+|+|+|+++++.|++++...+.  ++.++.+|+.++ +      ...++|
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~d~~~l-~------~~~~~f  103 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARKL-S------FEDKTF  103 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCTTSC-C------SCTTCE
T ss_pred             CCCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhccccc--cccccccccccc-c------ccCcCc
Confidence            46679999999999999999974   56999999999999999999988764  478888898775 1      125899


Q ss_pred             eEEEEcCCcc-----chHHHHHHHHhccCCCeEEEEeccc
Q 026461          149 DYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       149 D~V~~d~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      |+|++.....     +...+++.+.++|+|||.+++....
T Consensus       104 D~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         104 DYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             EEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             eEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            9999875433     3456889999999999999887543

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.61  E-value=2.5e-15  Score=116.73  Aligned_cols=105  Identities=17%  Similarity=0.216  Sum_probs=87.6

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ...++++|||||||+|..+.+|++.   +.+|+++|+++.+++.++++....++. ++++...|..+...        .+
T Consensus        27 ~~~~~grvLDiGcG~G~~~~~la~~---g~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~d~~~~~~--------~~   94 (198)
T d2i6ga1          27 KVVAPGRTLDLGCGNGRNSLYLAAN---GYDVTAWDKNPASMANLERIKAAEGLD-NLQTDLVDLNTLTF--------DG   94 (198)
T ss_dssp             TTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEECCTTTCCC--------CC
T ss_pred             ccCCCCcEEEECCCCCHHHHHHHHH---hhhhccccCcHHHHHHHHHHhhhcccc-chhhhheecccccc--------cc
Confidence            4557789999999999999999986   459999999999999999999988875 59999999876522        58


Q ss_pred             CeeEEEEcCCc-----cchHHHHHHHHhccCCCeEEEEeccc
Q 026461          147 SFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       147 ~fD~V~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      +||+|++....     .....+++.+.++|+|||++++....
T Consensus        95 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  136 (198)
T d2i6ga1          95 EYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAM  136 (198)
T ss_dssp             CEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             cccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            99999986532     34567999999999999998886443

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.60  E-value=3.1e-15  Score=122.49  Aligned_cols=106  Identities=9%  Similarity=0.140  Sum_probs=92.8

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           66 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      +...++.+|||||||.|..++++++..  +.+|+||.+|++.++.|++.+...|+.+++++..+|..+.          +
T Consensus        58 l~l~~G~~VLDiGCG~G~~a~~~a~~~--g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~----------~  125 (285)
T d1kpga_          58 LGLQPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF----------D  125 (285)
T ss_dssp             TTCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC----------C
T ss_pred             cCCCCCCEEEEecCcchHHHHHHHhcC--CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc----------c
Confidence            446678899999999999999999986  4799999999999999999999999999999999998655          5


Q ss_pred             CCeeEEEEcCC-----ccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          146 GSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       146 ~~fD~V~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ++||.|+.-..     ...+..+++.+.++|+|||.++++++.
T Consensus       126 ~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~  168 (285)
T d1kpga_         126 EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT  168 (285)
T ss_dssp             CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence            79999987532     345688999999999999999998875

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.60  E-value=1.1e-15  Score=117.83  Aligned_cols=121  Identities=10%  Similarity=0.010  Sum_probs=92.2

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCC-----------CC
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV-----------DH  122 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-----------~~  122 (238)
                      +.+...+++..| ...++.+|||+|||+|..+.+||+.   +.+|+|+|+|+.+++.|++.....+.           ..
T Consensus         5 ~~~~~~~~~~~l-~~~~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~   80 (201)
T d1pjza_           5 VNKDLQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAP   80 (201)
T ss_dssp             STHHHHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECS
T ss_pred             HHHHHHHHHHHc-CCCCCCEEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhccccchhhhhhhhhcccc
Confidence            345556666655 4667889999999999999999986   67999999999999999998855432           13


Q ss_pred             cEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCc-----cchHHHHHHHHhccCCCeEEEEecccc
Q 026461          123 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       123 ~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      .++++.+|..+..+..      ...||+|+.....     .....+++.+.+.|||||.+++....+
T Consensus        81 ~~~~~~~d~~~l~~~~------~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~  141 (201)
T d1pjza_          81 GIEIWCGDFFALTARD------IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEY  141 (201)
T ss_dssp             SSEEEEECCSSSTHHH------HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESS
T ss_pred             ccceeccccccccccc------ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccc
Confidence            4678888887764433      3689999876432     235678899999999999887755443

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.60  E-value=4.9e-15  Score=119.48  Aligned_cols=107  Identities=16%  Similarity=0.211  Sum_probs=90.1

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           66 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ....+.++|||||||+|..+..+++..| +.+++++|+ +++++.+++++...++.++++++.+|..+..         .
T Consensus        76 ~d~~~~~~VLDvGcG~G~~~~~la~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~---------~  144 (253)
T d1tw3a2          76 YDWTNVRHVLDVGGGKGGFAAAIARRAP-HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL---------P  144 (253)
T ss_dssp             SCCTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------S
T ss_pred             cCCccCCEEEEeCCCCCHHHHHHHHhcc-eeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhc---------c
Confidence            3456778999999999999999999987 889999998 7899999999999999999999999986531         3


Q ss_pred             CCeeEEEEcCCccch-----HHHHHHHHhccCCCeEEEEeccc
Q 026461          146 GSFDYAFVDADKDNY-----CNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~-----~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      .+||+|++....+++     ..+++++.+.|+|||.+++.+..
T Consensus       145 ~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~  187 (253)
T d1tw3a2         145 RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  187 (253)
T ss_dssp             SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEecc
Confidence            689999987644332     46789999999999988886654

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.60  E-value=7.8e-15  Score=122.06  Aligned_cols=112  Identities=22%  Similarity=0.323  Sum_probs=93.4

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           65 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      ++...++++|||+|||+|..+++++..   ..+|+++|+++.+++.+++|+..+|+. +++++++|+.++++.+...   
T Consensus       140 ~~~~~~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~-~~~~i~~d~~~~~~~~~~~---  212 (318)
T d1wxxa2         140 YMERFRGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKE---  212 (318)
T ss_dssp             HGGGCCEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHT---
T ss_pred             HHHHhCCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCC-CcceeeccHHHHhhhhHhh---
Confidence            445567889999999999999998865   469999999999999999999999985 5999999999987776544   


Q ss_pred             CCCeeEEEEcCCc------------cchHHHHHHHHhccCCCeEEEEeccc
Q 026461          145 EGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       145 ~~~fD~V~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      .++||+|++|.+.            ..+..++..+.++|+|||+|++..+.
T Consensus       213 ~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs  263 (318)
T d1wxxa2         213 GERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  263 (318)
T ss_dssp             TCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             hcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            6799999999652            12345677778999999999986554

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.60  E-value=1.9e-15  Score=119.52  Aligned_cols=112  Identities=24%  Similarity=0.339  Sum_probs=89.0

Q ss_pred             cCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           53 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      .+.|.....+-..+...++.+|||||||+|+.|..|+...   ++|+++|++++.++.|++++...   .+++++.+|..
T Consensus        53 ~~~p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d~~  126 (224)
T d1vbfa_          53 TTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYY---NNIKLILGDGT  126 (224)
T ss_dssp             ECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTC---SSEEEEESCGG
T ss_pred             eehhhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhcc---cccccccCchh
Confidence            3555554444455678888999999999999999999864   69999999999999999987643   47999999987


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ..++.       .++||.|++.+..+..+   +.+.+.|+|||.||+-
T Consensus       127 ~g~~~-------~~pfD~Iiv~~a~~~ip---~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         127 LGYEE-------EKPYDRVVVWATAPTLL---CKPYEQLKEGGIMILP  164 (224)
T ss_dssp             GCCGG-------GCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEE
T ss_pred             hcchh-------hhhHHHHHhhcchhhhh---HHHHHhcCCCCEEEEE
Confidence            75443       37899999987665554   3456889999999883

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.59  E-value=1.7e-15  Score=122.04  Aligned_cols=105  Identities=12%  Similarity=0.099  Sum_probs=84.9

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++++|||+|||+|..+..++..-  .++|+|+|+|+.+++.|++.....+...++.+.++|+......      ..++
T Consensus        22 ~~~~~~VLDlGCG~G~~~~~~~~~~--~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~------~~~~   93 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGDLLKYERAG--IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD------LGKE   93 (252)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHT--CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC------CSSC
T ss_pred             CCCcCEEEEecccCcHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccc------cccc
Confidence            3467899999999999999988752  3689999999999999999998888777899999998543111      2578


Q ss_pred             eeEEEEcCCcc-------chHHHHHHHHhccCCCeEEEEe
Q 026461          148 FDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       148 fD~V~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ||+|++....+       ....+++.+.++|+|||++++.
T Consensus        94 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_          94 FDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             EEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            99999865433       2356889999999999999874

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.3e-15  Score=120.50  Aligned_cols=108  Identities=12%  Similarity=0.159  Sum_probs=86.7

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ...+..+|||||||+|..+..++...+  .+|++||+|+.+++.|++++...+. .+++|+++|+.++..       ..+
T Consensus        57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~ak~~~~~~~~-~~~~f~~~d~~~~~~-------~~~  126 (222)
T d2ex4a1          57 NKTGTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTP-------EPD  126 (222)
T ss_dssp             -CCCCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCC-------CSS
T ss_pred             CCCCCCEEEEeccCCCHhhHHHHHhcC--CEEEEeecCHHHhhccccccccccc-ccccccccccccccc-------ccc
Confidence            345667999999999999999876543  5899999999999999999887765 458999999988621       258


Q ss_pred             CeeEEEEcCCccch-----HHHHHHHHhccCCCeEEEEecccc
Q 026461          147 SFDYAFVDADKDNY-----CNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       147 ~fD~V~~d~~~~~~-----~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      +||+|++.....+.     ..+++.+.+.|+|||.+++.+...
T Consensus       127 ~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~  169 (222)
T d2ex4a1         127 SYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA  169 (222)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             cccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEccc
Confidence            99999987654333     468899999999999988866543

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.58  E-value=1.1e-15  Score=120.99  Aligned_cols=116  Identities=16%  Similarity=0.217  Sum_probs=90.4

Q ss_pred             CcHh-HHHHHHHHH-hhcCCCEEEEEcccccHHHHHHHhhCCC-----CCEEEEEeCCchhHHHHHHHHHHcCCC----C
Q 026461           54 TAPD-AGQLMAMLL-RLVNAKKTIEIGVFTGYSLLLTALTIPE-----DGQITAIDVNRETYEIGLPIIKKAGVD----H  122 (238)
Q Consensus        54 ~~~~-~~~~l~~l~-~~~~~~~vLeiG~G~G~~t~~la~~~~~-----~~~v~~iD~~~~~~~~a~~~~~~~~~~----~  122 (238)
                      +.|. .+.++..|. ...+..+|||||||+||.|..++..+.+     ..+|+++|++++.++.|++++...++.    .
T Consensus        62 s~P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~  141 (223)
T d1r18a_          62 SAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSG  141 (223)
T ss_dssp             CCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ehhhhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCcc
Confidence            4454 466666553 4567789999999999999999886532     358999999999999999987654321    4


Q ss_pred             cEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          123 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       123 ~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ++.+.++|+.+..+.       .++||.|++.+.....++   .+.+.|++||.+|+
T Consensus       142 nv~~~~~d~~~~~~~-------~~~fD~Iiv~~a~~~~p~---~l~~~Lk~gG~lV~  188 (223)
T d1r18a_         142 QLLIVEGDGRKGYPP-------NAPYNAIHVGAAAPDTPT---ELINQLASGGRLIV  188 (223)
T ss_dssp             SEEEEESCGGGCCGG-------GCSEEEEEECSCBSSCCH---HHHHTEEEEEEEEE
T ss_pred             EEEEEeccccccccc-------ccceeeEEEEeechhchH---HHHHhcCCCcEEEE
Confidence            699999999876443       479999999987766554   45789999999987

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=1.4e-14  Score=117.59  Aligned_cols=119  Identities=19%  Similarity=0.258  Sum_probs=95.8

Q ss_pred             ccCcHhHHHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec
Q 026461           52 MGTAPDAGQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES  129 (238)
Q Consensus        52 ~~~~~~~~~~l~~l~~~--~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~  129 (238)
                      ....++++.++...+..  ..+.+|||+|||+|..++.++...| ..+|+++|+|+.+++.|++|+..+++ .+++++++
T Consensus        88 lIPRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p-~~~v~avDis~~Al~~A~~Na~~~~~-~~v~~~~~  165 (274)
T d2b3ta1          88 LIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQHLAI-KNIHILQS  165 (274)
T ss_dssp             CCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECC
T ss_pred             cccccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCC-cceeeeccchhHHHhHHHHHHHHhCc-ccceeeec
Confidence            34456777777665543  3456899999999999999999987 89999999999999999999999998 46999999


Q ss_pred             chhHHHHHHHhcccCCCCeeEEEEcCCc----------------------------cchHHHHHHHHhccCCCeEEEEe
Q 026461          130 EALSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       130 d~~~~l~~~~~~~~~~~~fD~V~~d~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      |..+.++        ..+||+|+++.+-                            ..+..+++.+.++|+|||.+++.
T Consensus       166 d~~~~~~--------~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE  236 (274)
T d2b3ta1         166 DWFSALA--------GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE  236 (274)
T ss_dssp             STTGGGT--------TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ccccccC--------CCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE
Confidence            9877543        4699999997431                            01245667777899999999986

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.2e-14  Score=115.35  Aligned_cols=129  Identities=7%  Similarity=-0.019  Sum_probs=99.8

Q ss_pred             CCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC-------
Q 026461           47 HPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG-------  119 (238)
Q Consensus        47 ~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~-------  119 (238)
                      .+|..-...+...+.+..+....++.+|||+|||.|..+.+||+.   +.+|+|||+|+.+++.+++.....+       
T Consensus        22 ~~w~~~~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~---G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~   98 (229)
T d2bzga1          22 TAFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADR---GHSVVGVEISELGIQEFFTEQNLSYSEEPITE   98 (229)
T ss_dssp             CTTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTT
T ss_pred             CCCccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhhccccccchhc
Confidence            344444456767777777777778889999999999999999984   5799999999999999988764321       


Q ss_pred             ---------CCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcC-----CccchHHHHHHHHhccCCCeEEEEecccc
Q 026461          120 ---------VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       120 ---------~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                               ...+++++++|..+..+..      .+.||+|+...     .+.....+++.+.++|+|||.+++....+
T Consensus        99 ~~~~~~~~~~~~~v~~~~~d~~~l~~~~------~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~  171 (229)
T d2bzga1          99 IPGTKVFKSSSGNISLYCCSIFDLPRTN------IGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSY  171 (229)
T ss_dssp             STTCEEEEETTSSEEEEESCGGGGGGSC------CCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEEC
T ss_pred             ccccceeeecCCcEEEEEcchhhccccc------cCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEccc
Confidence                     1246899999988764432      58999998653     23456789999999999999877765544

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.56  E-value=2.8e-14  Score=108.35  Aligned_cols=121  Identities=13%  Similarity=0.132  Sum_probs=86.5

Q ss_pred             ccCcHhHHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecc
Q 026461           52 MGTAPDAGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE  130 (238)
Q Consensus        52 ~~~~~~~~~~l~~l~~-~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d  130 (238)
                      |..+...+.+...+.. ..++++|||+|||+|..++..+..   +++++++|.++.+++.+++|++..++.+++...  +
T Consensus        22 pt~~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~---ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~--~   96 (171)
T d1ws6a1          22 PSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDPEAVRLLKENVRRTGLGARVVAL--P   96 (171)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECS--C
T ss_pred             CCcHHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhc---cchhhhcccCHHHHhhhhHHHHhhccccceeee--e
Confidence            3344444555555553 356789999999999999987764   568999999999999999999999987755444  4


Q ss_pred             hhHHHHHHHhcccCCCCeeEEEEcCCc-cchHHHHHHHH--hccCCCeEEEEe
Q 026461          131 ALSVLDQLLKYSENEGSFDYAFVDADK-DNYCNYHERLM--KLLKVGGIAVYD  180 (238)
Q Consensus       131 ~~~~l~~~~~~~~~~~~fD~V~~d~~~-~~~~~~~~~~~--~~L~~gG~lv~~  180 (238)
                      +...++....   ...+||+||+|.+. ......+..+.  .+|+|||+++++
T Consensus        97 ~d~~~~~~~~---~~~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie  146 (171)
T d1ws6a1          97 VEVFLPEAKA---QGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQ  146 (171)
T ss_dssp             HHHHHHHHHH---TTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred             hhcccccccc---cCCccceeEEccccccCHHHHHHHHHHcCCcCCCeEEEEE
Confidence            4444333221   25789999999752 23334444443  579999999985

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.56  E-value=6.1e-14  Score=116.37  Aligned_cols=111  Identities=11%  Similarity=0.205  Sum_probs=93.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCC-CcEEEEecchhHHHHHHHhcccCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ..++++|||++||+|..+++++..-  ..+|+++|+++.+++.+++|++.+++. .+++++++|+.++++.+..+   ..
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~g--a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~---~~  216 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRH---HL  216 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHT---TC
T ss_pred             hhCCCceeecCCCCcHHHHHHHhCC--CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhh---cC
Confidence            4567899999999999999887642  458999999999999999999999986 57999999999998877654   57


Q ss_pred             CeeEEEEcCCc------------cchHHHHHHHHhccCCCeEEEEeccc
Q 026461          147 SFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       147 ~fD~V~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      +||+|++|.+.            ..+..++..+.++|+|||+|++....
T Consensus       217 ~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs  265 (317)
T d2b78a2         217 TYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA  265 (317)
T ss_dssp             CEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            99999999652            23566788888999999999986543

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.56  E-value=7.2e-15  Score=118.61  Aligned_cols=105  Identities=8%  Similarity=0.050  Sum_probs=83.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .+..+|||+|||+|..|..|+....  .+|+++|+++.+++.|++++...   ++++++++|+.++.       +..++|
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~~~-------~~~~~f  159 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETAT-------LPPNTY  159 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCC-------CCSSCE
T ss_pred             CCCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhcccccc---ccceeEEccccccc-------cCCCcc
Confidence            4567999999999999999886543  48999999999999999876432   45899999987752       125799


Q ss_pred             eEEEEcCCccch-----HHHHHHHHhccCCCeEEEEeccccC
Q 026461          149 DYAFVDADKDNY-----CNYHERLMKLLKVGGIAVYDNTLWG  185 (238)
Q Consensus       149 D~V~~d~~~~~~-----~~~~~~~~~~L~~gG~lv~~~~~~~  185 (238)
                      |+|++.....++     ..+++.+.+.|+|||++++.+....
T Consensus       160 D~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~  201 (254)
T d1xtpa_         160 DLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCST  201 (254)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC-
T ss_pred             ceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCC
Confidence            999987654333     4678999999999999999765543

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=1.8e-14  Score=117.18  Aligned_cols=105  Identities=18%  Similarity=0.213  Sum_probs=82.9

Q ss_pred             HHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHH
Q 026461           59 GQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD  136 (238)
Q Consensus        59 ~~~l~~l~~~--~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~  136 (238)
                      ..+...+...  .++.+|||||||+|..+..+++..+ +.+++|+|+++.+++.|++..      .++++.++|+.+. +
T Consensus        71 ~~~~~~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l-~  142 (268)
T d1p91a_          71 DAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRL-P  142 (268)
T ss_dssp             HHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSC-S
T ss_pred             HHHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHCC-CCEEEEecchHhhhhhhhccc------ccccceeeehhhc-c
Confidence            3344444332  3567999999999999999999886 789999999999999998752      4689999998775 1


Q ss_pred             HHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          137 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       137 ~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                            ..+++||+|+.......    ++++.+.|||||++++..
T Consensus       143 ------~~~~sfD~v~~~~~~~~----~~e~~rvLkpgG~l~~~~  177 (268)
T d1p91a_         143 ------FSDTSMDAIIRIYAPCK----AEELARVVKPGGWVITAT  177 (268)
T ss_dssp             ------BCTTCEEEEEEESCCCC----HHHHHHHEEEEEEEEEEE
T ss_pred             ------CCCCCEEEEeecCCHHH----HHHHHHHhCCCcEEEEEe
Confidence                  23689999998765544    466889999999999864

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.54  E-value=2.3e-14  Score=111.73  Aligned_cols=103  Identities=17%  Similarity=0.317  Sum_probs=86.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      ....|||||||+|.++..+|+..| +..++|+|+++..+..|.+.+.+.+++ ++.++.+|+.++...+     +..++|
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p-~~~~iGid~~~~~v~~a~~~~~~~~l~-Ni~~~~~da~~l~~~~-----~~~~~~  103 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGVP-NIKLLWVDGSDLTDYF-----EDGEID  103 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCS-SEEEEECCSSCGGGTS-----CTTCCS
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCC-CCceEEEeccHHHHHHHHHhhhhhccc-cceeeecCHHHHhhhc-----cCCcee
Confidence            445799999999999999999988 899999999999999999999999985 5999999998765433     367999


Q ss_pred             EEEEcCC---ccc--------hHHHHHHHHhccCCCeEEEE
Q 026461          150 YAFVDAD---KDN--------YCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       150 ~V~~d~~---~~~--------~~~~~~~~~~~L~~gG~lv~  179 (238)
                      .|++..+   +..        ...+++.+.+.|+|||.|.+
T Consensus       104 ~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i  144 (204)
T d1yzha1         104 RLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHF  144 (204)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEE
T ss_pred             hhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEE
Confidence            9987632   111        26899999999999999876

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.53  E-value=2.1e-13  Score=112.06  Aligned_cols=122  Identities=14%  Similarity=0.182  Sum_probs=94.1

Q ss_pred             cHhHHHHHHHHH-hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCC-cEEEEecchh
Q 026461           55 APDAGQLMAMLL-RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEAL  132 (238)
Q Consensus        55 ~~~~~~~l~~l~-~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~v~~~~~d~~  132 (238)
                      ....-..+..++ ...++++|||++||+|..++.++..   +++|++||.++.+++.|++|+..+++.+ +++|+++|+.
T Consensus       116 qr~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~---GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~  192 (309)
T d2igta1         116 QIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAM  192 (309)
T ss_dssp             GHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHH
T ss_pred             hhHHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhC---CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHH
Confidence            344444444444 3456889999999999999999874   5699999999999999999999999875 6999999999


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcCCc-------------cchHHHHHHHHhccCCCeEEEEecc
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDADK-------------DNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~~~-------------~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      +++......   ...||+|++|.+.             ..+...+..+..+|+|||.+++-..
T Consensus       193 ~~l~~~~~~---~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~  252 (309)
T d2igta1         193 KFIQREERR---GSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA  252 (309)
T ss_dssp             HHHHHHHHH---TCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred             HhHHHHhhc---CCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence            998776544   5799999999642             1123445566789999986555433

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.53  E-value=2.3e-14  Score=112.21  Aligned_cols=106  Identities=17%  Similarity=0.161  Sum_probs=85.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++.+|||+|||+|+.+.++++..+ .++|+++|+++.+++.+++..+..+   ++.++.+|+.......    .....
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~-~g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~~d~~~~~~~~----~~~~~  125 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASKPWKYS----GIVEK  125 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTCGGGTT----TTCCC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhcc-CCeEEEEeCCHHHHHHHHHHhhccC---CceEEEeeccCccccc----cccce
Confidence            55678999999999999999999987 7899999999999999999887753   6999999886642111    12457


Q ss_pred             eeEEEEcCC-ccchHHHHHHHHhccCCCeEEEEec
Q 026461          148 FDYAFVDAD-KDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       148 fD~V~~d~~-~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      +|+||.+.. +.....++.++.+.|||||.+++..
T Consensus       126 vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         126 VDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEEecccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            888887743 4455678899999999999998754

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.53  E-value=3.7e-14  Score=112.93  Aligned_cols=96  Identities=19%  Similarity=0.217  Sum_probs=76.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .++.+|||+|||+|..+..+++.   +.+|+|+|+|+.+++.|+++.    .   ..++.+|+.++ +      ...++|
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~----~---~~~~~~~~~~l-~------~~~~~f  103 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKG----V---KNVVEAKAEDL-P------FPSGAF  103 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHT----C---SCEEECCTTSC-C------SCTTCE
T ss_pred             CCCCEEEEECCCCchhccccccc---ceEEEEeeccccccccccccc----c---ccccccccccc-c------cccccc
Confidence            45679999999999999999974   569999999999999999862    2   23567787664 1      225899


Q ss_pred             eEEEEcCC----ccchHHHHHHHHhccCCCeEEEEec
Q 026461          149 DYAFVDAD----KDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       149 D~V~~d~~----~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      |+|++-..    ..+...+++.+.++|+|||+++++-
T Consensus       104 D~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~  140 (246)
T d2avna1         104 EAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATV  140 (246)
T ss_dssp             EEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEE
Confidence            99987432    3466788999999999999999864

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.53  E-value=1.5e-14  Score=114.47  Aligned_cols=104  Identities=15%  Similarity=0.171  Sum_probs=83.2

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHh
Q 026461           61 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK  140 (238)
Q Consensus        61 ~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~  140 (238)
                      .+..+....++++|||||||+|..+..++..   ..+|+|+|+++++++.|++..     .+++++++++..+..     
T Consensus        11 ~~~~~~~~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~giD~s~~~i~~a~~~~-----~~~~~~~~~~~~~~~-----   77 (225)
T d2p7ia1          11 MVRAFTPFFRPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRL-----KDGITYIHSRFEDAQ-----   77 (225)
T ss_dssp             HHHHHGGGCCSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHS-----CSCEEEEESCGGGCC-----
T ss_pred             HHHHhhhhCCCCcEEEEeCCCcHHHHHHHHc---CCeEEEEeCcHHHhhhhhccc-----ccccccccccccccc-----
Confidence            3455556678889999999999999999875   357999999999999998764     246999999987652     


Q ss_pred             cccCCCCeeEEEEcCCc---cchHHHHHHHH-hccCCCeEEEEe
Q 026461          141 YSENEGSFDYAFVDADK---DNYCNYHERLM-KLLKVGGIAVYD  180 (238)
Q Consensus       141 ~~~~~~~fD~V~~d~~~---~~~~~~~~~~~-~~L~~gG~lv~~  180 (238)
                         .+++||+|++....   .+....+..+. ++|+|||.+++.
T Consensus        78 ---~~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~  118 (225)
T d2p7ia1          78 ---LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLV  118 (225)
T ss_dssp             ---CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             ---cccccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEE
Confidence               15799999987643   44567778887 789999999985

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=6.4e-14  Score=115.08  Aligned_cols=117  Identities=15%  Similarity=0.186  Sum_probs=87.3

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCC---CcEEEEecchhHH
Q 026461           58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD---HKINFIESEALSV  134 (238)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~  134 (238)
                      ....+..++...+.++|||+|||+|..+..|++.   +.+|+|+|+|+.+++.|+++....+..   .+..+...+....
T Consensus        44 ~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~---g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (292)
T d1xvaa_          44 YKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTL  120 (292)
T ss_dssp             HHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGH
T ss_pred             HHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHc---CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccc
Confidence            3445555566667889999999999999999985   469999999999999999998876654   2344556666544


Q ss_pred             HHHHHhcccCCCCeeEEEEcCC-----------ccchHHHHHHHHhccCCCeEEEEec
Q 026461          135 LDQLLKYSENEGSFDYAFVDAD-----------KDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       135 l~~~~~~~~~~~~fD~V~~d~~-----------~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      -..+    +..++||+|++-..           ......+++.+.+.|||||+++++-
T Consensus       121 ~~~~----~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  174 (292)
T d1xvaa_         121 DKDV----PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  174 (292)
T ss_dssp             HHHS----CCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cccc----CCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence            3332    23578999987421           1234568999999999999999964

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=8.7e-14  Score=106.70  Aligned_cols=120  Identities=15%  Similarity=0.069  Sum_probs=94.7

Q ss_pred             ccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461           52 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA  131 (238)
Q Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (238)
                      |+.+...+.++..+.......+|||++||+|..++..+..-  ..+|++||.++.+++.+++|+...+. .+++++.+|+
T Consensus        25 Pt~~~vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsrG--a~~v~~VE~~~~a~~~~k~N~~~~~~-~~~~ii~~d~  101 (183)
T d2fpoa1          25 PTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNA  101 (183)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCH
T ss_pred             cCcHHHHHHHHhhhhcccchhhhhhhhccccceeeeEEecC--cceeEEEEEeechhhHHHHHHhhccc-cceeeeeecc
Confidence            44555556666666666688899999999999999877643  35899999999999999999998876 4589999999


Q ss_pred             hHHHHHHHhcccCCCCeeEEEEcCCc--cchHHHHHHHH--hccCCCeEEEEe
Q 026461          132 LSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLM--KLLKVGGIAVYD  180 (238)
Q Consensus       132 ~~~l~~~~~~~~~~~~fD~V~~d~~~--~~~~~~~~~~~--~~L~~gG~lv~~  180 (238)
                      .+++...      ..+||+||+|.+.  ..+...+..+.  .+|+++|+++++
T Consensus       102 ~~~l~~~------~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE  148 (183)
T d2fpoa1         102 MSFLAQK------GTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVE  148 (183)
T ss_dssp             HHHHSSC------CCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             ccccccc------ccccCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEEE
Confidence            8876542      5799999999763  33566666665  469999999986

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.51  E-value=9.4e-14  Score=114.88  Aligned_cols=108  Identities=16%  Similarity=0.192  Sum_probs=89.7

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC----CCCcEEEEecchhHHHHHHHhc
Q 026461           66 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG----VDHKINFIESEALSVLDQLLKY  141 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~l~~~~~~  141 (238)
                      ....+|++||.||.|.|..+.++++..+ ..+|++||++++.++.+++++...+    -.++++++.+|+.+++...   
T Consensus        73 ~~~~~pk~VLiiG~G~G~~~~~ll~~~~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~---  148 (312)
T d1uira_          73 LTHPEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT---  148 (312)
T ss_dssp             HHSSCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC---
T ss_pred             hhCCCcceEEEeCCCchHHHHHHHhcCC-cceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhc---
Confidence            3356889999999999999999988654 7899999999999999999985421    1368999999999998764   


Q ss_pred             ccCCCCeeEEEEcCCcc----------chHHHHHHHHhccCCCeEEEEe
Q 026461          142 SENEGSFDYAFVDADKD----------NYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~~~----------~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                         ..+||+|++|....          ...++++.+.+.|+|||++++.
T Consensus       149 ---~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~  194 (312)
T d1uira_         149 ---EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ  194 (312)
T ss_dssp             ---CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             ---CCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence               57899999986311          1368999999999999999985

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.49  E-value=5.8e-14  Score=113.40  Aligned_cols=104  Identities=15%  Similarity=0.142  Sum_probs=89.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++.+|||+|||+|..++.+|...  .++|+++|++|.+++.+++|++.+++.++++++++|+.++.+        .+.
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~--~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~--------~~~  174 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--------ENI  174 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------CSC
T ss_pred             cCCccEEEECcceEcHHHHHHHHhC--CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc--------CCC
Confidence            3577899999999999999999863  469999999999999999999999999999999999987633        478


Q ss_pred             eeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461          148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      ||.|+++.+. ...++++.+.++|++||+|.++..
T Consensus       175 ~D~Ii~~~p~-~~~~~l~~a~~~l~~gG~lh~~~~  208 (260)
T d2frna1         175 ADRILMGYVV-RTHEFIPKALSIAKDGAIIHYHNT  208 (260)
T ss_dssp             EEEEEECCCS-SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             CCEEEECCCC-chHHHHHHHHhhcCCCCEEEEEec
Confidence            9999998644 446778888899999999977543

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.49  E-value=3.9e-14  Score=114.35  Aligned_cols=106  Identities=16%  Similarity=0.147  Sum_probs=88.9

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      .....++|||||||+|..+..+++.+| ..+++++|+ |+.++.+++++...++.+++.+..+|..+.+         +.
T Consensus        78 d~~~~~~vlDvG~G~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~---------p~  146 (256)
T d1qzza2          78 DWSAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL---------PV  146 (256)
T ss_dssp             CCTTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------SC
T ss_pred             CCccCCEEEEECCCCCHHHHHHHHhhc-CcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccc---------cc
Confidence            345678999999999999999999998 889999998 8899999999999999999999999876531         35


Q ss_pred             CeeEEEEcCCccc-----hHHHHHHHHhccCCCeEEEEeccc
Q 026461          147 SFDYAFVDADKDN-----YCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       147 ~fD~V~~d~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      +||+|++....++     ...+++++.+.|+|||.+++.+..
T Consensus       147 ~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~  188 (256)
T d1qzza2         147 TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA  188 (256)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             cchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEec
Confidence            7999998754333     356789999999999988876643

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.46  E-value=1.2e-13  Score=109.59  Aligned_cols=108  Identities=16%  Similarity=0.082  Sum_probs=81.7

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++.+|||+|||+|+.+.++++..+ .++|+++|+++.+++.+++.....   +++..+.+|+.......    +....
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~-~g~V~aVDiS~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~----~~~~~  143 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYA----NIVEK  143 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGT----TTCCC
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhhh---cccceEEEeeccCcccc----cccce
Confidence            55678999999999999999999876 789999999999999998876443   46888888877653322    11234


Q ss_pred             eeEEEEcC-CccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          148 FDYAFVDA-DKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       148 fD~V~~d~-~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      +|+++.+. .......++.++.+.|||||.+++..-.
T Consensus       144 v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~  180 (230)
T d1g8sa_         144 VDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKA  180 (230)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             eEEeeccccchHHHHHHHHHHHHhcccCceEEEEeec
Confidence            44555553 3344567789999999999998886543

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.45  E-value=1.2e-13  Score=109.23  Aligned_cols=120  Identities=17%  Similarity=0.173  Sum_probs=90.3

Q ss_pred             CcHhHHHHHHHH--HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461           54 TAPDAGQLMAML--LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA  131 (238)
Q Consensus        54 ~~~~~~~~l~~l--~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (238)
                      -+...+.++..+  +...++.+|||+|||+|..+.++++...+.++|+++|+++.+++.++++++..   .++..+..|+
T Consensus        55 rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~---~~~~~i~~d~  131 (227)
T d1g8aa_          55 RSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDA  131 (227)
T ss_dssp             TCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCT
T ss_pred             ccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc---CCceEEEEEC
Confidence            334444444433  23556789999999999999999999877899999999999999999887554   3477777777


Q ss_pred             hHHHHHHHhcccCCCCeeEEEEcCCcc-chHHHHHHHHhccCCCeEEEEe
Q 026461          132 LSVLDQLLKYSENEGSFDYAFVDADKD-NYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       132 ~~~l~~~~~~~~~~~~fD~V~~d~~~~-~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      .......    .....+|+||.|.... ....++.++.+.|+|||.+++.
T Consensus       132 ~~~~~~~----~~~~~vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~  177 (227)
T d1g8aa_         132 TKPEEYR----ALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             TCGGGGT----TTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCccccc----ccccceEEEEEEccccchHHHHHHHHHHhcccCCeEEEE
Confidence            5432111    1247899999986543 4566889999999999998875

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.43  E-value=6.5e-13  Score=108.63  Aligned_cols=108  Identities=16%  Similarity=0.159  Sum_probs=89.2

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC--C-CCcEEEEecchhHHHHHHHhccc
Q 026461           67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSE  143 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~l~~~~~~~~  143 (238)
                      ...+|++||-||.|.|..+.+++++.+ ..+|+++|+++..++.+++++....  + .+|++++.+|+.+++...     
T Consensus        86 ~~~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~-----  159 (295)
T d1inla_          86 LHPNPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF-----  159 (295)
T ss_dssp             HSSSCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC-----
T ss_pred             hCCCCceEEEecCCchHHHHHHHhcCC-CceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcC-----
Confidence            356789999999999999999998654 6899999999999999999886432  1 368999999999988754     


Q ss_pred             CCCCeeEEEEcCCcc--------chHHHHHHHHhccCCCeEEEEec
Q 026461          144 NEGSFDYAFVDADKD--------NYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~--------~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                       .+.||+|++|...+        ...++++.+.+.|+|||++++..
T Consensus       160 -~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~  204 (295)
T d1inla_         160 -KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  204 (295)
T ss_dssp             -SSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             -CCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence             57899999995321        13689999999999999999863

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=99.41  E-value=1.9e-13  Score=108.22  Aligned_cols=117  Identities=21%  Similarity=0.299  Sum_probs=87.8

Q ss_pred             HhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           56 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI---PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      |....+++.++...+|++|||||++.|++++++++.+   ...++|+++|+++........      ..++++++++|+.
T Consensus        66 p~d~~~~~eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~------~~~~I~~i~gDs~  139 (232)
T d2bm8a1          66 PDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENITLHQGDCS  139 (232)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTEEEEECCSS
T ss_pred             HHHHHHHHHHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc------cccceeeeecccc
Confidence            6777888889988899999999999999999988654   447999999998865443221      1367999999875


Q ss_pred             H--HHHHHHhcccCCCCeeEEEEcCCccchHHHHH-HHHhccCCCeEEEEeccc
Q 026461          133 S--VLDQLLKYSENEGSFDYAFVDADKDNYCNYHE-RLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       133 ~--~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~-~~~~~L~~gG~lv~~~~~  183 (238)
                      +  .+..+     ....+|+||+|+.+.......+ .+.++|++||+++++|..
T Consensus       140 ~~~~~~~l-----~~~~~dlIfID~~H~~~~v~~~~~~~~lLk~GG~iIveD~i  188 (232)
T d2bm8a1         140 DLTTFEHL-----REMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDMI  188 (232)
T ss_dssp             CSGGGGGG-----SSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECSCH
T ss_pred             cHHHHHHH-----HhcCCCEEEEcCCcchHHHHHHHHHhcccCcCCEEEEEcCC
Confidence            4  33333     2457899999987654433332 245899999999999875

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.41  E-value=2.2e-13  Score=106.10  Aligned_cols=97  Identities=20%  Similarity=0.209  Sum_probs=77.0

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           65 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      +....+..+|||||||+|..+..++       +++|||+|+.+++.+++.        +++++++|+.+..       ..
T Consensus        31 ~~~~~~~~~vLDiGcG~G~~~~~~~-------~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~-------~~   88 (208)
T d1vlma_          31 VKCLLPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARKR--------GVFVLKGTAENLP-------LK   88 (208)
T ss_dssp             HHHHCCSSCEEEETCTTSTTHHHHT-------CCEEEESCHHHHHHHHHT--------TCEEEECBTTBCC-------SC
T ss_pred             HHhhCCCCeEEEECCCCcccccccc-------eEEEEeCChhhccccccc--------ccccccccccccc-------cc
Confidence            4444566689999999999877764       468999999999998863        4899999987651       12


Q ss_pred             CCCeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          145 EGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       145 ~~~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      +++||+|++...   ..+...+++++.+.|+|||.+++....
T Consensus        89 ~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~  130 (208)
T d1vlma_          89 DESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVD  130 (208)
T ss_dssp             TTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cccccccccccccccccccccchhhhhhcCCCCceEEEEecC
Confidence            589999998753   345677899999999999999997654

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.9e-13  Score=110.27  Aligned_cols=119  Identities=10%  Similarity=0.046  Sum_probs=84.7

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHhhC----C-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcE--EEEecchhH
Q 026461           61 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI----P-EDGQITAIDVNRETYEIGLPIIKKAGVDHKI--NFIESEALS  133 (238)
Q Consensus        61 ~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~----~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v--~~~~~d~~~  133 (238)
                      ++..+....+..+|||||||+|..+..++..+    + ...+++++|+++.+++.+++.+.......++  .+...++.+
T Consensus        31 ~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~  110 (280)
T d1jqea_          31 IIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSE  110 (280)
T ss_dssp             HTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHH
T ss_pred             HHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhh
Confidence            33334334444489999999999999887654    2 1357899999999999999998765433444  456666655


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEe
Q 026461          134 VLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ....... ....++||+|++...   ..+...+++.+.++|+|||++++.
T Consensus       111 ~~~~~~~-~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~  159 (280)
T d1jqea_         111 YQSRMLE-KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLII  159 (280)
T ss_dssp             HHHHHTT-SSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEE
T ss_pred             hcchhcc-cCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEE
Confidence            4333211 124689999998753   345678999999999999988774

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=8e-12  Score=101.95  Aligned_cols=161  Identities=19%  Similarity=0.223  Sum_probs=116.8

Q ss_pred             cCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           53 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      .++.....+...++...+..+|||+++|.|+-|.++++... +++|+++|+++..+...++++.+.|+.. +.....+..
T Consensus        85 ~vQD~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~-~~~i~a~d~~~~R~~~l~~~~~r~g~~~-~~~~~~~~~  162 (284)
T d1sqga2          85 TVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGMKA-TVKQGDGRY  162 (284)
T ss_dssp             EECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTCCC-EEEECCTTC
T ss_pred             EeccccccccccccCccccceeEeccCccccchhhhhhhhh-hhhhhhhhcchhhhhhHhhhhhcccccc-eeeeccccc
Confidence            35566677777777777888999999999999999999776 6999999999999999999999999864 444444433


Q ss_pred             HHHHHHHhcccCCCCeeEEEEcCCccch-------------------------HHHHHHHHhccCCCeEEEEeccccCcc
Q 026461          133 SVLDQLLKYSENEGSFDYAFVDADKDNY-------------------------CNYHERLMKLLKVGGIAVYDNTLWGGT  187 (238)
Q Consensus       133 ~~l~~~~~~~~~~~~fD~V~~d~~~~~~-------------------------~~~~~~~~~~L~~gG~lv~~~~~~~g~  187 (238)
                      .....      ..+.||.|++|++++..                         ..++..+.++|+|||.||-..+..   
T Consensus       163 ~~~~~------~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~---  233 (284)
T d1sqga2         163 PSQWC------GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV---  233 (284)
T ss_dssp             THHHH------TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC---
T ss_pred             cchhc------ccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC---
Confidence            22111      14789999999764331                         346677778999999999776653   


Q ss_pred             ccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEE-----------eee---cCCeeEEEEEcC
Q 026461          188 VAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLS-----------HVA---LGDGITICRRIF  238 (238)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------~lp---~~~G~~i~~~~~  238 (238)
                        .++++         ...++.|   +.++++++.+           ++|   -.||+++|+.+|
T Consensus       234 --~~~EN---------E~vv~~~---l~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGFF~A~l~K  284 (284)
T d1sqga2         234 --LPEEN---------SLQIKAF---LQRTADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIK  284 (284)
T ss_dssp             --CGGGT---------HHHHHHH---HHHCTTCEECSSBCSSSBSEEECCCTTSCCSEEEEEEEC
T ss_pred             --chhhC---------HHHHHHH---HHhCCCcEEecCCCCCCCcEEECCCCCCcccEEEEEEEC
Confidence              23332         2335555   5567777653           334   238999998765

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.39  E-value=1.2e-12  Score=107.51  Aligned_cols=110  Identities=16%  Similarity=0.203  Sum_probs=88.4

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCC---CCcEEEEecchhHHHHHHHhc
Q 026461           65 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV---DHKINFIESEALSVLDQLLKY  141 (238)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~v~~~~~d~~~~l~~~~~~  141 (238)
                      +....+|++||-||.|.|..+..++++.+ ..+|+++|++++.++.+++++....-   .++++++.+|+.+++...   
T Consensus       101 l~~~~~pk~VLIiGgG~G~~~rellk~~~-v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~---  176 (312)
T d2b2ca1         101 MFAHPDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH---  176 (312)
T ss_dssp             HHHSSSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC---
T ss_pred             HhcCCCCCeEEEeCCCchHHHHHHHHcCC-cceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhC---
Confidence            34456889999999999999999998654 67999999999999999998754221   268999999999998764   


Q ss_pred             ccCCCCeeEEEEcCCcc-------chHHHHHHHHhccCCCeEEEEec
Q 026461          142 SENEGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                         ..+||+|++|....       ...++++.+.+.|+|||+++...
T Consensus       177 ---~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~  220 (312)
T d2b2ca1         177 ---KNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  220 (312)
T ss_dssp             ---TTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             ---CCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence               57999999996322       13678999999999999999863

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.39  E-value=2.3e-12  Score=107.37  Aligned_cols=107  Identities=17%  Similarity=0.186  Sum_probs=84.9

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           66 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ....++++|||||||+|..++.+++..  ..+|+++|.++ ++..|++.....++.++++++++++.+..  +     +.
T Consensus        34 ~~~~~~~~VLDlGcGtG~ls~~aa~~G--a~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~--~-----~~  103 (328)
T d1g6q1_          34 KDLFKDKIVLDVGCGTGILSMFAAKHG--AKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVH--L-----PF  103 (328)
T ss_dssp             HHHHTTCEEEEETCTTSHHHHHHHHTC--CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC--C-----SS
T ss_pred             cccCCcCEEEEeCCCCCHHHHHHHHhC--CCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhcc--C-----cc
Confidence            344578999999999999999888853  35999999986 67899999999999999999999987761  1     25


Q ss_pred             CCeeEEEEcCC------ccchHHHHHHHHhccCCCeEEEEecc
Q 026461          146 GSFDYAFVDAD------KDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       146 ~~fD~V~~d~~------~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      ++||+|+....      .......+....++|||||+++-+.+
T Consensus       104 ~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~~~  146 (328)
T d1g6q1_         104 PKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKC  146 (328)
T ss_dssp             SCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEE
T ss_pred             cceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEeeec
Confidence            79999997531      23346677777899999999875443

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=1.4e-12  Score=108.21  Aligned_cols=104  Identities=17%  Similarity=0.188  Sum_probs=83.7

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++++|||||||+|..++.+|+..  ..+|+++|.++. ...+++++..+++.++++++++++.++.       .+.++
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~G--a~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~-------~~~~~  100 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKAG--ARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVE-------LPVEK  100 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCC-------CSSSC
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHhC--CCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcc-------cccce
Confidence            4478899999999999999988853  358999999875 5778888899999999999999997751       12579


Q ss_pred             eeEEEEcCC------ccchHHHHHHHHhccCCCeEEEEec
Q 026461          148 FDYAFVDAD------KDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       148 fD~V~~d~~------~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ||+|+....      ......++..+.++|+|||.++.+.
T Consensus       101 ~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~~  140 (316)
T d1oria_         101 VDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDR  140 (316)
T ss_dssp             EEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCE
T ss_pred             eEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEeee
Confidence            999987632      2345778888889999999988544

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.38  E-value=2.1e-12  Score=104.74  Aligned_cols=109  Identities=16%  Similarity=0.188  Sum_probs=90.5

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC---CCCcEEEEecchhHHHHHHHhcc
Q 026461           66 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG---VDHKINFIESEALSVLDQLLKYS  142 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~l~~~~~~~  142 (238)
                      ....+|++||-||.|.|..+.+++++.+ ..+|+++|+++..++.+++++....   -.+|++++.+|+...+...    
T Consensus        71 ~~~~~p~~vLiiGgG~G~~~~~~l~~~~-~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~----  145 (274)
T d1iy9a_          71 FTHPNPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS----  145 (274)
T ss_dssp             HHSSSCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC----
T ss_pred             hccCCcceEEecCCCCcHHHHHHHhcCC-cceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhc----
Confidence            3356789999999999999999998654 6899999999999999999885421   1368999999999998754    


Q ss_pred             cCCCCeeEEEEcCCcc-------chHHHHHHHHhccCCCeEEEEec
Q 026461          143 ENEGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       143 ~~~~~fD~V~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                        ..+||+|++|...+       ...++++.+.+.|+|||+++...
T Consensus       146 --~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~  189 (274)
T d1iy9a_         146 --ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (274)
T ss_dssp             --CSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             --CCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence              57899999996322       14789999999999999999863

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.37  E-value=6.2e-12  Score=101.60  Aligned_cols=122  Identities=20%  Similarity=0.221  Sum_probs=93.7

Q ss_pred             ccCcHhHHHHHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe
Q 026461           52 MGTAPDAGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE  128 (238)
Q Consensus        52 ~~~~~~~~~~l~~l~~---~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~  128 (238)
                      ....++++.++.....   .....+++|+|||+|..++.++.. + ..+|+++|+|+++++.|++|++.+++.+++.+..
T Consensus        89 lIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~-~-~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~  166 (271)
T d1nv8a_          89 FVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-S-DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRK  166 (271)
T ss_dssp             CCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-S-SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred             cCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhc-c-cceeeechhhhhHHHHHHHHHHHcCCCceeEEee
Confidence            3455677777665543   345678999999999999998864 5 7899999999999999999999999999999999


Q ss_pred             cchhHHHHHHHhcccCCCCeeEEEEcCCc-----------------------cchHHHHHHHHhccCCCeEEEEec
Q 026461          129 SEALSVLDQLLKYSENEGSFDYAFVDADK-----------------------DNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       129 ~d~~~~l~~~~~~~~~~~~fD~V~~d~~~-----------------------~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ++..+.++..      .++||+|+.+.+-                       ....-+-+.+.++|+|||++++.-
T Consensus       167 ~~~~~~~~~~------~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Ei  236 (271)
T d1nv8a_         167 GEFLEPFKEK------FASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI  236 (271)
T ss_dssp             SSTTGGGGGG------TTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred             cccccccccc------cCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEE
Confidence            9988765543      4799999987430                       001122233457899999999863

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.8e-12  Score=104.51  Aligned_cols=107  Identities=14%  Similarity=0.185  Sum_probs=88.2

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc---CCCCcEEEEecchhHHHHHHHhccc
Q 026461           67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA---GVDHKINFIESEALSVLDQLLKYSE  143 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---~~~~~v~~~~~d~~~~l~~~~~~~~  143 (238)
                      ...+|++||-||.|.|..+..+++..+ ..+|+++|+++..++.+++++...   --.+|++++.+|+.+++...     
T Consensus        75 ~~~~pk~vLiiGgG~G~~~~~~l~~~~-~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~-----  148 (285)
T d2o07a1          75 SHPNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN-----  148 (285)
T ss_dssp             TSSSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC-----
T ss_pred             hCcCcCeEEEeCCCchHHHHHHHHcCC-cceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcC-----
Confidence            456789999999999999999998654 689999999999999999988542   12378999999999998753     


Q ss_pred             CCCCeeEEEEcCCccc-------hHHHHHHHHhccCCCeEEEEe
Q 026461          144 NEGSFDYAFVDADKDN-------YCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~~-------~~~~~~~~~~~L~~gG~lv~~  180 (238)
                       .++||+|++|.....       ..++++.+.+.|+|||++++.
T Consensus       149 -~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q  191 (285)
T d2o07a1         149 -QDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ  191 (285)
T ss_dssp             -SSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred             -CCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence             579999999963211       247899999999999999986

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.5e-12  Score=107.21  Aligned_cols=113  Identities=12%  Similarity=0.081  Sum_probs=85.8

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc-------CCC-CcEEEEecchhHHHH
Q 026461           65 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-------GVD-HKINFIESEALSVLD  136 (238)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-------~~~-~~v~~~~~d~~~~l~  136 (238)
                      .+...+..+|||||||+|..++.+|...+ ..+++|||+++.+++.|++.....       |.. .+++++++|+.+..-
T Consensus       146 ~~~l~~~~~vlD~GcG~G~~~~~~a~~~~-~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~  224 (328)
T d1nw3a_         146 EIKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEW  224 (328)
T ss_dssp             HSCCCTTCEEEEETCTTSHHHHHHHHHCC-CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHH
T ss_pred             HcCCCCCCEEEEcCCCCCHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccccc
Confidence            34466788999999999999999998876 679999999999999998776543       332 469999999976421


Q ss_pred             HHHhcccCCCCeeEEEEcCC--ccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          137 QLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       137 ~~~~~~~~~~~fD~V~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      .  +.   ....|+||+...  .......+.++.+.|||||.||+...+
T Consensus       225 ~--~~---~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~~  268 (328)
T d1nw3a_         225 R--ER---IANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPF  268 (328)
T ss_dssp             H--HH---HHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred             c--cc---cCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEeccc
Confidence            1  00   134688998643  334567788889999999999986544

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.35  E-value=3.8e-12  Score=103.40  Aligned_cols=107  Identities=15%  Similarity=0.227  Sum_probs=87.4

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc---------CCCCcEEEEecchhHHH
Q 026461           65 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA---------GVDHKINFIESEALSVL  135 (238)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---------~~~~~v~~~~~d~~~~l  135 (238)
                      +....+|++||.||.|.|..+..++.. + ..+|+++|+++..++.+++++...         ...+|++++.+|+.+++
T Consensus        67 l~~~~~p~~vLiiG~G~G~~~~~~l~~-~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l  144 (276)
T d1mjfa_          67 MLAHPKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFI  144 (276)
T ss_dssp             HHHSSCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHH
T ss_pred             hhcCCCCceEEEecCCchHHHHHHHHh-C-CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHH
Confidence            334568899999999999999888874 4 468999999999999999887432         22478999999999988


Q ss_pred             HHHHhcccCCCCeeEEEEcCCccc-------hHHHHHHHHhccCCCeEEEEe
Q 026461          136 DQLLKYSENEGSFDYAFVDADKDN-------YCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       136 ~~~~~~~~~~~~fD~V~~d~~~~~-------~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ..       .++||+|++|.....       ..++++.+.+.|+|||++++.
T Consensus       145 ~~-------~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q  189 (276)
T d1mjfa_         145 KN-------NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  189 (276)
T ss_dssp             HH-------CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             hc-------cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence            64       478999999964221       267999999999999999985

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.35  E-value=5.1e-12  Score=97.17  Aligned_cols=117  Identities=17%  Similarity=0.160  Sum_probs=91.1

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHH
Q 026461           59 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL  138 (238)
Q Consensus        59 ~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~  138 (238)
                      .+++..+ ...+...+||++||+|..+..+++.+| .++|+|+|.++++++.|++++...+  +++.+++++..+.-..+
T Consensus        13 ~evi~~l-~~~~~~~~lD~t~G~Gghs~~il~~~~-~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~~~   88 (192)
T d1m6ya2          13 REVIEFL-KPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLL   88 (192)
T ss_dssp             HHHHHHH-CCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHH
T ss_pred             HHHHHhh-CCCCCCEEEEecCCCcHHHHHHHhcCC-CCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHHHH
Confidence            3444444 456778999999999999999999997 7999999999999999999987754  67999999876643322


Q ss_pred             HhcccCCCCeeEEEEcCCccc------------hHHHHHHHHhccCCCeEEEEec
Q 026461          139 LKYSENEGSFDYAFVDADKDN------------YCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       139 ~~~~~~~~~fD~V~~d~~~~~------------~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ..  ...++||.|++|.+.+.            ....+..+.+.|+|||.+++-+
T Consensus        89 ~~--~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~  141 (192)
T d1m6ya2          89 KT--LGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS  141 (192)
T ss_dssp             HH--TTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred             HH--cCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence            21  13579999999976533            2456677778999999988744

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.35  E-value=6.9e-12  Score=102.40  Aligned_cols=108  Identities=20%  Similarity=0.321  Sum_probs=89.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC---CCCcEEEEecchhHHHHHHHhcccC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG---VDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      ..+|++||-||.|.|..+..+++..+ ..+|+++|++++.++.+++++....   -.++++++.+|+.+.+...     .
T Consensus        78 ~~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~-----~  151 (290)
T d1xj5a_          78 IPNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA-----A  151 (290)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS-----C
T ss_pred             CCCCcceEEecCCchHHHHHHHhccc-ceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhc-----c
Confidence            45789999999999999999998654 6799999999999999999875322   2478999999999998754     1


Q ss_pred             CCCeeEEEEcCCccc-------hHHHHHHHHhccCCCeEEEEec
Q 026461          145 EGSFDYAFVDADKDN-------YCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~-------~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      .++||+|++|.....       ..++++.+.+.|+|||+++++-
T Consensus       152 ~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  195 (290)
T d1xj5a_         152 EGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  195 (290)
T ss_dssp             TTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence            358999999964211       3679999999999999999864

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.35  E-value=5.5e-12  Score=96.45  Aligned_cols=125  Identities=13%  Similarity=0.097  Sum_probs=95.9

Q ss_pred             CccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCC-cEEEEec
Q 026461           51 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIES  129 (238)
Q Consensus        51 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~v~~~~~  129 (238)
                      .|+.+...+.++..+.......+|||+.||+|..++..++.-  ..+|++||.+..+++..++|++..+..+ ...+...
T Consensus        24 RPt~~~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRG--A~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~  101 (183)
T d2ifta1          24 RPTGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQ--AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQ  101 (183)
T ss_dssp             ----CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECS
T ss_pred             CcCcHHHHHHHHHHhhhhcccceEeecccCccceeeeeeeec--ceeeEEeecccchhhhHhhHHhhhcccccccccccc
Confidence            455667777777777666688899999999999999988753  4699999999999999999999988764 5777888


Q ss_pred             chhHHHHHHHhcccCCCCeeEEEEcCCcc--chHHHHHHHH--hccCCCeEEEEec
Q 026461          130 EALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLM--KLLKVGGIAVYDN  181 (238)
Q Consensus       130 d~~~~l~~~~~~~~~~~~fD~V~~d~~~~--~~~~~~~~~~--~~L~~gG~lv~~~  181 (238)
                      |+.+.+...    ....+||+||+|.+-.  .+...++.+.  .+|+++|+++++.
T Consensus       102 d~~~~l~~~----~~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE~  153 (183)
T d2ifta1         102 SSLDFLKQP----QNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVET  153 (183)
T ss_dssp             CHHHHTTSC----CSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             ccccccccc----ccCCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence            877765432    1245799999998643  3566666665  4799999999864

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=4.6e-12  Score=104.73  Aligned_cols=105  Identities=17%  Similarity=0.167  Sum_probs=81.5

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ...++++|||||||+|..++.+|+..  ..+|+++|.++.+. .+++.....+..++++++++++.+...       ...
T Consensus        32 ~~~~~~~VLDiGcG~G~lsl~aa~~G--a~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~~~~~l~~-------~~~  101 (311)
T d2fyta1          32 HIFKDKVVLDVGCGTGILSMFAAKAG--AKKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKGKIEEVHL-------PVE  101 (311)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEESCTTTSCC-------SCS
T ss_pred             ccCCcCEEEEECCCCCHHHHHHHHcC--CCEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEeeHHHhcC-------ccc
Confidence            34578899999999999999999863  35899999998865 567777888888999999999887621       257


Q ss_pred             CeeEEEEcCC------ccchHHHHHHHHhccCCCeEEEEec
Q 026461          147 SFDYAFVDAD------KDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       147 ~fD~V~~d~~------~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      +||+|+....      ......++....++|+|||.++.+.
T Consensus       102 ~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~~  142 (311)
T d2fyta1         102 KVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDI  142 (311)
T ss_dssp             CEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCE
T ss_pred             cceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEeccc
Confidence            9999997531      1223456666678999999988543

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.28  E-value=2.9e-11  Score=102.69  Aligned_cols=112  Identities=13%  Similarity=0.198  Sum_probs=83.4

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC-------CC-CcEEE-EecchhH--H
Q 026461           66 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG-------VD-HKINF-IESEALS--V  134 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~-------~~-~~v~~-~~~d~~~--~  134 (238)
                      +...+..++||||||.|..++.+|...+ ..+|+|||+++.+++.|+++....+       .. ..+.+ ..++..+  .
T Consensus       212 l~Lkpgd~fLDLGCG~G~~vl~aA~~~g-~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~  290 (406)
T d1u2za_         212 CQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNR  290 (406)
T ss_dssp             TTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHH
T ss_pred             hCCCCCCEEEeCCCCCcHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccc
Confidence            3466778999999999999999999876 6799999999999999998876532       11 22444 3444332  2


Q ss_pred             HHHHHhcccCCCCeeEEEEcCC--ccchHHHHHHHHhccCCCeEEEEecccc
Q 026461          135 LDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       135 l~~~~~~~~~~~~fD~V~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      ....      ....|+|++...  .......+.++.+.|||||.||+.+.+.
T Consensus       291 ~d~~------~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~~~~  336 (406)
T d1u2za_         291 VAEL------IPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLR  336 (406)
T ss_dssp             HHHH------GGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred             cccc------cccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEecccC
Confidence            2222      367899998753  4456778899999999999999876554

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.26  E-value=6.8e-11  Score=97.56  Aligned_cols=125  Identities=21%  Similarity=0.248  Sum_probs=99.7

Q ss_pred             ccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461           52 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA  131 (238)
Q Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (238)
                      ..++.....+...++...++.+|||+++|.|+-|.+++..+...+.++++|.++..+...++++.+.|..+ +.+...|.
T Consensus        98 ~~vQD~aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~-i~~~~~d~  176 (313)
T d1ixka_          98 IYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN-VILFHSSS  176 (313)
T ss_dssp             EEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS-EEEESSCG
T ss_pred             EEEecccccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhc-cccccccc
Confidence            34555666666667777778899999999999999999998878999999999999999999999999854 77788787


Q ss_pred             hHHHHHHHhcccCCCCeeEEEEcCCccch-------------------------HHHHHHHHhccCCCeEEEEecccc
Q 026461          132 LSVLDQLLKYSENEGSFDYAFVDADKDNY-------------------------CNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       132 ~~~l~~~~~~~~~~~~fD~V~~d~~~~~~-------------------------~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      ... +..      ...||.|++|++++..                         .+++..++++|||||.||...+..
T Consensus       177 ~~~-~~~------~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl  247 (313)
T d1ixka_         177 LHI-GEL------NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  247 (313)
T ss_dssp             GGG-GGG------CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             ccc-ccc------cccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence            655 222      5789999999754321                         346667778999999999876654

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=5.4e-12  Score=101.01  Aligned_cols=113  Identities=20%  Similarity=0.036  Sum_probs=76.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEE------------------------
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKIN------------------------  125 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~------------------------  125 (238)
                      ++.+|||||||+|..+..++...  ..+|+|+|+|+.+++.|++++...+......                        
T Consensus        51 ~g~~vLDlGcG~G~~~~~~~~~~--~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (257)
T d2a14a1          51 QGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  128 (257)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHhHHHHhccc--cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence            45689999999999888777642  3479999999999999999987655321100                        


Q ss_pred             -----EEecchhHHHHHHHhcccCCCCeeEEEEcCCc-------cchHHHHHHHHhccCCCeEEEEeccccCcc
Q 026461          126 -----FIESEALSVLDQLLKYSENEGSFDYAFVDADK-------DNYCNYHERLMKLLKVGGIAVYDNTLWGGT  187 (238)
Q Consensus       126 -----~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~-------~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~  187 (238)
                           ....+.....   .......++||+|++....       ..+..+++.+.++|||||.+++.++...+.
T Consensus       129 ~~~~~~~~~~~~~~~---~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~  199 (257)
T d2a14a1         129 AAVKRVLKCDVHLGN---PLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS  199 (257)
T ss_dssp             HHEEEEEECCTTSSS---TTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE
T ss_pred             hhhhccccccccccc---ccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEeccccc
Confidence                 0000000000   0001236789999875432       345678899999999999999988765443

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.22  E-value=6.2e-11  Score=91.80  Aligned_cols=88  Identities=13%  Similarity=0.165  Sum_probs=69.0

Q ss_pred             cHhHHHHHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461           55 APDAGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA  131 (238)
Q Consensus        55 ~~~~~~~l~~l~~---~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (238)
                      ++..+..+..++.   ...+++|||+|||+|..++.++.. + ..+|+++|+++.+++.+++|+...+.  +.+++.+|+
T Consensus        28 p~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~-g-~~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~~~~d~  103 (201)
T d1wy7a1          28 PGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL-G-AKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDV  103 (201)
T ss_dssp             CHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCG
T ss_pred             CHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHc-C-CCEEEEEcCcHHHHHHHHHHHHHcCC--CceEEECch
Confidence            3444444433333   236789999999999999987764 2 46999999999999999999988774  578999998


Q ss_pred             hHHHHHHHhcccCCCCeeEEEEcCC
Q 026461          132 LSVLDQLLKYSENEGSFDYAFVDAD  156 (238)
Q Consensus       132 ~~~l~~~~~~~~~~~~fD~V~~d~~  156 (238)
                      .+.          .++||+|++|.+
T Consensus       104 ~~~----------~~~fD~Vi~nPP  118 (201)
T d1wy7a1         104 SEF----------NSRVDIVIMNPP  118 (201)
T ss_dssp             GGC----------CCCCSEEEECCC
T ss_pred             hhh----------CCcCcEEEEcCc
Confidence            665          579999999975

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=9.3e-11  Score=95.92  Aligned_cols=99  Identities=21%  Similarity=0.227  Sum_probs=79.0

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      ++.....+...++...+..+|||+++|.|+-|.++++.+.+.++|+++|+++..++..++++.+.|+.+ +.+...|...
T Consensus        78 ~QD~sS~l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~-~~~~~~d~~~  156 (293)
T d2b9ea1          78 LQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC-CELAEEDFLA  156 (293)
T ss_dssp             ECCTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCGGG
T ss_pred             EcCCcccccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccc-eeeeehhhhh
Confidence            344445555556666778899999999999999999888768999999999999999999999999854 8999988876


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCc
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADK  157 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~  157 (238)
                      ..+..    +..+.||.|++|+++
T Consensus       157 ~~~~~----~~~~~fD~VL~DaPC  176 (293)
T d2b9ea1         157 VSPSD----PRYHEVHYILLDPSC  176 (293)
T ss_dssp             SCTTC----GGGTTEEEEEECCCC
T ss_pred             hcccc----cccceeeEEeecCcc
Confidence            53321    113689999999653

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.17  E-value=8.5e-11  Score=90.44  Aligned_cols=70  Identities=17%  Similarity=0.277  Sum_probs=59.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      ..+++|||+|||+|..++.++..-  ..+|+++|+++.+++.|++|+      .+++++++|+.+.          .++|
T Consensus        47 l~Gk~VLDlGcGtG~l~i~a~~~g--a~~V~~vDid~~a~~~ar~N~------~~~~~~~~D~~~l----------~~~f  108 (197)
T d1ne2a_          47 IGGRSVIDAGTGNGILACGSYLLG--AESVTAFDIDPDAIETAKRNC------GGVNFMVADVSEI----------SGKY  108 (197)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTT--BSEEEEEESCHHHHHHHHHHC------TTSEEEECCGGGC----------CCCE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcC--CCcccccccCHHHHHHHHHcc------ccccEEEEehhhc----------CCcc
Confidence            467899999999999998877642  358999999999999999985      3589999998664          5899


Q ss_pred             eEEEEcCC
Q 026461          149 DYAFVDAD  156 (238)
Q Consensus       149 D~V~~d~~  156 (238)
                      |+|+++.+
T Consensus       109 D~Vi~NPP  116 (197)
T d1ne2a_         109 DTWIMNPP  116 (197)
T ss_dssp             EEEEECCC
T ss_pred             eEEEeCcc
Confidence            99999865

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.5e-11  Score=99.27  Aligned_cols=115  Identities=15%  Similarity=0.015  Sum_probs=75.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCc-------------------------
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK-------------------------  123 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-------------------------  123 (238)
                      .++.++||||||+|..++..+...  ..+|+++|+++.+++.+++++...+..-.                         
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  130 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL  130 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred             CCCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence            356799999999998776555432  35899999999999999998765432110                         


Q ss_pred             ----EEEEecchhHHHHHHHhcccCCCCeeEEEEcCC-------ccchHHHHHHHHhccCCCeEEEEeccccCc
Q 026461          124 ----INFIESEALSVLDQLLKYSENEGSFDYAFVDAD-------KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  186 (238)
Q Consensus       124 ----v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~-------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (238)
                          ..+..+|.....+. .......++||+|++...       ...+...++++.++|||||++++.+.+...
T Consensus       131 ~~~~~~~~~~Dv~~~~~~-~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~  203 (263)
T d2g72a1         131 RARVKRVLPIDVHQPQPL-GAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEES  203 (263)
T ss_dssp             HHHEEEEECCCTTSSSTT-CSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCC
T ss_pred             hhhhhccccccccCCCcc-ccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCc
Confidence                11222332211000 000112468999987532       234677889999999999999998776443

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=4.4e-11  Score=95.73  Aligned_cols=84  Identities=17%  Similarity=0.270  Sum_probs=68.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHH-HHHHhcccCCCCe
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL-DQLLKYSENEGSF  148 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l-~~~~~~~~~~~~f  148 (238)
                      +..++||||||+|..++.++...+ ..+++++|+++++++.|++|++.+++.+++.+.+.+....+ ..+..  ...+.|
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~-~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~--~~~~~f  137 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKE--ESEIIY  137 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTT--CCSCCB
T ss_pred             ccceEEEeCCCchHHHHHHHHhCC-CccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhh--cccCce
Confidence            345899999999999999999887 88999999999999999999999999999999887654322 11110  125689


Q ss_pred             eEEEEcCC
Q 026461          149 DYAFVDAD  156 (238)
Q Consensus       149 D~V~~d~~  156 (238)
                      |+|+++.+
T Consensus       138 D~ivsNPP  145 (250)
T d2h00a1         138 DFCMCNPP  145 (250)
T ss_dssp             SEEEECCC
T ss_pred             eEEEecCc
Confidence            99998753

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=4.6e-10  Score=86.89  Aligned_cols=101  Identities=14%  Similarity=0.135  Sum_probs=87.9

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      ..++++|+|+|||.|..++.+|-..| +.+++.+|.+...+...++.....++. +++++++.+.+...        ..+
T Consensus        63 ~~~~~~ilDiGsGaG~PGi~laI~~p-~~~~~Lves~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~~--------~~~  132 (207)
T d1jsxa_          63 YLQGERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFPS--------EPP  132 (207)
T ss_dssp             GCCSSEEEEETCTTTTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSCC--------CSC
T ss_pred             hhcCCceeeeeccCCceeeehhhhcc-cceEEEEecchHHHHHHHHHHHHcCCc-ceeeeccchhhhcc--------ccc
Confidence            45678999999999999999999877 899999999999999999999999985 59999999877522        468


Q ss_pred             eeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ||+|.+.+. .....+++.+.++++++|.+++
T Consensus       133 fD~V~sRA~-~~~~~ll~~~~~~l~~~g~~~~  163 (207)
T d1jsxa_         133 FDGVISRAF-ASLNDMVSWCHHLPGEQGRFYA  163 (207)
T ss_dssp             EEEEECSCS-SSHHHHHHHHTTSEEEEEEEEE
T ss_pred             cceehhhhh-cCHHHHHHHHHHhcCCCcEEEE
Confidence            999988764 4678888999999999999886

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=1.3e-09  Score=91.28  Aligned_cols=122  Identities=12%  Similarity=0.140  Sum_probs=92.5

Q ss_pred             CccCcHhHHHHHHHHH----hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEE
Q 026461           51 MMGTAPDAGQLMAMLL----RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF  126 (238)
Q Consensus        51 ~~~~~~~~~~~l~~l~----~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~  126 (238)
                      +....+...+.+...+    ...+..+|||+.||+|..++.||+.   ..+|+++|.++++++.|++|...+++. +++|
T Consensus       189 FfQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~---~~~V~gvE~~~~ai~~A~~na~~n~i~-n~~~  264 (358)
T d1uwva2         189 FIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQ-NVTF  264 (358)
T ss_dssp             CCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEE
T ss_pred             hhccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhcccc---ccEEEeccCcHHHHHHHHHhHHhcccc-ccee
Confidence            3445555555554433    2335678999999999999999985   469999999999999999999999985 5999


Q ss_pred             EecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          127 IESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       127 ~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      +.++..+.+......   ..++|+|++|.+.......+..+.+. +|.-++.++
T Consensus       265 ~~~~~~~~~~~~~~~---~~~~d~vilDPPR~G~~~~~~~l~~~-~~~~ivYVS  314 (358)
T d1uwva2         265 YHENLEEDVTKQPWA---KNGFDKVLLDPARAGAAGVMQQIIKL-EPIRIVYVS  314 (358)
T ss_dssp             EECCTTSCCSSSGGG---TTCCSEEEECCCTTCCHHHHHHHHHH-CCSEEEEEE
T ss_pred             eecchhhhhhhhhhh---hccCceEEeCCCCccHHHHHHHHHHc-CCCEEEEEe
Confidence            999988765433221   57899999998877777777777553 666666654

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.96  E-value=3e-09  Score=83.79  Aligned_cols=103  Identities=16%  Similarity=0.204  Sum_probs=86.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      ...+++|||||.|.-++.++-.+| +.+++.+|.+...+...+......++. ++.++++.+++....-    ...++||
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p-~~~v~Lves~~KK~~FL~~v~~~L~L~-n~~i~~~R~E~~~~~~----~~~~~~D  143 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRK----DVRESYD  143 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCT----TTTTCEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCC-CccceeecchHHHHHHHHHHHHHhCCC-CcEEEeehhhhccccc----cccccce
Confidence            467999999999999999999887 899999999999999999999999995 5899998886652211    1146899


Q ss_pred             EEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          150 YAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       150 ~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      +|..-+. .....+++.+.+++++||.+++
T Consensus       144 ~v~sRAv-a~l~~ll~~~~~~l~~~g~~i~  172 (239)
T d1xdza_         144 IVTARAV-ARLSVLSELCLPLVKKNGLFVA  172 (239)
T ss_dssp             EEEEECC-SCHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEEhhh-hCHHHHHHHHhhhcccCCEEEE
Confidence            9999874 3668888999999999999886

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.95  E-value=9.3e-09  Score=86.38  Aligned_cols=107  Identities=17%  Similarity=0.178  Sum_probs=89.3

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCC--------------cEEEEecch
Q 026461           66 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH--------------KINFIESEA  131 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~--------------~v~~~~~d~  131 (238)
                      ++..++.+|||..||+|.-++..+...+ ..+|++.|+|+.+++.+++|++.++..+              .+.+.+.|+
T Consensus        41 ~~~~~~~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da  119 (375)
T d2dula1          41 LNILNPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDA  119 (375)
T ss_dssp             HHHHCCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCH
T ss_pred             HHHhCCCEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhh
Confidence            3445889999999999999998777665 5799999999999999999999887542              467788888


Q ss_pred             hHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          132 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       132 ~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ...+...      ...||+|.+|. ......+++.+.+.++.||+|++-
T Consensus       120 ~~~~~~~------~~~fDvIDiDP-fGs~~pfldsAi~a~~~~Gll~vT  161 (375)
T d2dula1         120 NRLMAER------HRYFHFIDLDP-FGSPMEFLDTALRSAKRRGILGVT  161 (375)
T ss_dssp             HHHHHHS------TTCEEEEEECC-SSCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhhHhh------cCcCCcccCCC-CCCcHHHHHHHHHHhccCCEEEEE
Confidence            8776654      57899999996 344578999999999999999984

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.86  E-value=9e-09  Score=81.64  Aligned_cols=97  Identities=14%  Similarity=0.103  Sum_probs=76.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      ....+|||||||+|..++.+++..| +.+++.+|. |+.+       +..+..++++++.+|..+.          ....
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi-------~~~~~~~ri~~~~gd~~~~----------~p~~  140 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYP-LIKGINFDL-PQVI-------ENAPPLSGIEHVGGDMFAS----------VPQG  140 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHH-------TTCCCCTTEEEEECCTTTC----------CCCE
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCC-CCeEEEecc-hhhh-------hccCCCCCeEEecCCcccc----------cccc
Confidence            4567999999999999999999998 899999998 4433       3445568999999998653          2456


Q ss_pred             eEEEEcCCccc-----hHHHHHHHHhccCCCeEEEEecccc
Q 026461          149 DYAFVDADKDN-----YCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       149 D~V~~d~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      |++++....++     ....++.+.+.|+|||.|++.+...
T Consensus       141 D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~  181 (244)
T d1fp1d2         141 DAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFIL  181 (244)
T ss_dssp             EEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             eEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEe
Confidence            99988654333     4568899999999999888877654

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.77  E-value=3.9e-08  Score=76.22  Aligned_cols=107  Identities=17%  Similarity=0.223  Sum_probs=80.4

Q ss_pred             cHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH
Q 026461           55 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV  134 (238)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (238)
                      .+...+++..++...++.+|||.|||+|..+..+.+..+...+++++|+++..+..          ..+..++++|....
T Consensus         4 P~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~----------~~~~~~~~~~~~~~   73 (223)
T d2ih2a1           4 PPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL----------PPWAEGILADFLLW   73 (223)
T ss_dssp             CHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC----------CTTEEEEESCGGGC
T ss_pred             CHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh----------cccceeeeeehhcc
Confidence            45677888888877788899999999999999888877767889999999876432          23467888887654


Q ss_pred             HHHHHhcccCCCCeeEEEEcCCcc--------------------------------chHHHHHHHHhccCCCeEEEE
Q 026461          135 LDQLLKYSENEGSFDYAFVDADKD--------------------------------NYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       135 l~~~~~~~~~~~~fD~V~~d~~~~--------------------------------~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      .        ....||+|+.+.+..                                .+..++..+.++|++||.+++
T Consensus        74 ~--------~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~  142 (223)
T d2ih2a1          74 E--------PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF  142 (223)
T ss_dssp             C--------CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             c--------cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEE
Confidence            2        257999999874311                                023456777899999998655

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.75  E-value=2.1e-08  Score=82.86  Aligned_cols=116  Identities=18%  Similarity=0.181  Sum_probs=83.3

Q ss_pred             CcHhHHHHHHHHH----hhcCCCEEEEEcccccHHHHHHHhhCC----CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEE
Q 026461           54 TAPDAGQLMAMLL----RLVNAKKTIEIGVFTGYSLLLTALTIP----EDGQITAIDVNRETYEIGLPIIKKAGVDHKIN  125 (238)
Q Consensus        54 ~~~~~~~~l~~l~----~~~~~~~vLeiG~G~G~~t~~la~~~~----~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~  125 (238)
                      .++....++..++    ...++.+|||.|||+|...+.+...+.    ...+++|+|+++.++..|+.++...+.  ...
T Consensus        97 TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~--~~~  174 (328)
T d2f8la1          97 TPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMT  174 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCE
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh--hhh
Confidence            3455555555443    344566899999999999988875432    245899999999999999999887764  456


Q ss_pred             EEecchhHHHHHHHhcccCCCCeeEEEEcCCccc---------------------hHHHHHHHHhccCCCeEEEE
Q 026461          126 FIESEALSVLDQLLKYSENEGSFDYAFVDADKDN---------------------YCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       126 ~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~---------------------~~~~~~~~~~~L~~gG~lv~  179 (238)
                      +.++|.....        ...+||+|+.+.+...                     +..++..+.++|++||.+++
T Consensus       175 ~~~~d~~~~~--------~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~  241 (328)
T d2f8la1         175 LLHQDGLANL--------LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFF  241 (328)
T ss_dssp             EEESCTTSCC--------CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEE
T ss_pred             hhcccccccc--------ccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEE
Confidence            7777765432        2579999999865211                     22368888999999996443

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.74  E-value=9e-08  Score=72.26  Aligned_cols=113  Identities=11%  Similarity=0.083  Sum_probs=83.9

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHH
Q 026461           59 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL  138 (238)
Q Consensus        59 ~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~  138 (238)
                      .+++..| ...++..++|+.+|.|+.+..+++.   .++|+++|.++++++.+++.     ..+++.+++++..++...+
T Consensus         8 ~Evl~~l-~~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~~~~l   78 (182)
T d1wg8a2           8 QEALDLL-AVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHLKRHL   78 (182)
T ss_dssp             HHHHHHH-TCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGHHHHH
T ss_pred             HHHHHhc-CCCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHHHHHH
Confidence            3444443 4567789999999999999999984   67999999999999988763     2367999998876654433


Q ss_pred             HhcccCCCCeeEEEEcCCccch------------HHHHHHHHhccCCCeEEEEecc
Q 026461          139 LKYSENEGSFDYAFVDADKDNY------------CNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       139 ~~~~~~~~~fD~V~~d~~~~~~------------~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      ...  ..+.+|.|++|.+.+.+            ...++.....|++||.+++-..
T Consensus        79 ~~~--~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f  132 (182)
T d1wg8a2          79 AAL--GVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF  132 (182)
T ss_dssp             HHT--TCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHc--CCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence            221  25789999999754332            2356666789999999887543

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.73  E-value=6.6e-08  Score=76.05  Aligned_cols=100  Identities=12%  Similarity=0.107  Sum_probs=69.5

Q ss_pred             HhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHH
Q 026461           56 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL  135 (238)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l  135 (238)
                      +....-+-..+...+..+|||||||+|..|..|++.   ..+|++||+++.+++..++.+..   .++++++++|+.++-
T Consensus         7 ~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~---~~~v~avE~D~~l~~~l~~~~~~---~~n~~i~~~D~l~~~   80 (235)
T d1qama_           7 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDHKLCKTTENKLVD---HDNFQVLNKDILQFK   80 (235)
T ss_dssp             HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTTT---CCSEEEECCCGGGCC
T ss_pred             HHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC---cCceEEEeeccchHHHHHHHhhc---ccchhhhhhhhhhcc
Confidence            333333333444567889999999999999999986   35899999999999999887643   257999999998861


Q ss_pred             HHHHhcccCCCCeeEEEEcCCccchHHHHHHHH
Q 026461          136 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLM  168 (238)
Q Consensus       136 ~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~  168 (238)
                        +     .......|+.+.+-.-..+.+..+.
T Consensus        81 --~-----~~~~~~~vv~NLPYnIss~il~~ll  106 (235)
T d1qama_          81 --F-----PKNQSYKIFGNIPYNISTDIIRKIV  106 (235)
T ss_dssp             --C-----CSSCCCEEEEECCGGGHHHHHHHHH
T ss_pred             --c-----cccccceeeeeehhhhhHHHHHHHH
Confidence              1     1223335566655444455555543

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.71  E-value=4.7e-08  Score=77.40  Aligned_cols=96  Identities=9%  Similarity=0.117  Sum_probs=74.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      ....+|||||+|+|..+..+++.+| +.+++..|. |+.+       +..+..++++++.+|..+.          ...+
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi-------~~~~~~~rv~~~~gD~f~~----------~p~a  139 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETFP-KLKCIVFDR-PQVV-------ENLSGSNNLTYVGGDMFTS----------IPNA  139 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHH-------TTCCCBTTEEEEECCTTTC----------CCCC
T ss_pred             cCceEEEEecCCccHHHHHHHHhCC-CCeEEEecC-HHHH-------HhCcccCceEEEecCcccC----------CCCC
Confidence            4567899999999999999999998 889999998 4443       3445668999999998653          3578


Q ss_pred             eEEEEcCCccc-----hHHHHHHHHhccCCC---eEEEEeccc
Q 026461          149 DYAFVDADKDN-----YCNYHERLMKLLKVG---GIAVYDNTL  183 (238)
Q Consensus       149 D~V~~d~~~~~-----~~~~~~~~~~~L~~g---G~lv~~~~~  183 (238)
                      |++++....++     ...+++.+.+.|+||   |.+++.+..
T Consensus       140 D~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~  182 (244)
T d1fp2a2         140 DAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMV  182 (244)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred             cEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEee
Confidence            99998654333     356889999999998   666665544

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.67  E-value=2.2e-08  Score=76.59  Aligned_cols=106  Identities=19%  Similarity=0.157  Sum_probs=67.5

Q ss_pred             cCCCEEEEEcccccHHHHH----HHhhCC---CCCEEEEEeCCchhHHHHHHHH------------------HHcCCC--
Q 026461           69 VNAKKTIEIGVFTGYSLLL----TALTIP---EDGQITAIDVNRETYEIGLPII------------------KKAGVD--  121 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~----la~~~~---~~~~v~~iD~~~~~~~~a~~~~------------------~~~~~~--  121 (238)
                      .++-+|+.+|||+|--+..    +.+...   ...+|+++|+++.+++.|++..                  ...+..  
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            4566999999999985433    333322   1357999999999999997422                  111111  


Q ss_pred             ----------CcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCC-----ccchHHHHHHHHhccCCCeEEEEe
Q 026461          122 ----------HKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       122 ----------~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                                ..+.+...+.....      ....++||+|++-..     .......++.+.+.|+|||+|++-
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~------~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQ------YNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSS------CCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeehHHHHHHHHHHhhhhccccc------cCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                      11233333322210      012478999998753     233467889999999999999985

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=2.2e-07  Score=74.69  Aligned_cols=103  Identities=13%  Similarity=0.078  Sum_probs=77.4

Q ss_pred             CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      +++....-+...+...+...|||||+|.|..|..|++..   .+|++||+++.+++..++.+.......+++++.+|+.+
T Consensus         5 ~d~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~---~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~   81 (278)
T d1zq9a1           5 KNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLK   81 (278)
T ss_dssp             CCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTT
T ss_pred             CCHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcC---CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhh
Confidence            344444444445556667899999999999999999873   59999999999999999988776656789999999987


Q ss_pred             HHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHH
Q 026461          134 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM  168 (238)
Q Consensus       134 ~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~  168 (238)
                      .  .       ...++.|+.+.+..-..+.+..+.
T Consensus        82 ~--~-------~~~~~~vV~NLPY~Iss~il~~~~  107 (278)
T d1zq9a1          82 T--D-------LPFFDTCVANLPYQISSPFVFKLL  107 (278)
T ss_dssp             S--C-------CCCCSEEEEECCGGGHHHHHHHHH
T ss_pred             h--h-------hhhhhhhhcchHHHHHHHHHHHHH
Confidence            6  1       245667777766554555555544

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.62  E-value=7.2e-08  Score=76.27  Aligned_cols=96  Identities=13%  Similarity=0.147  Sum_probs=71.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      ..++|||||||+|..++.+++.+| +.+++.+|..+ .++       .....++++++.+|..+.+          +..|
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dlp~-vi~-------~~~~~~r~~~~~~d~~~~~----------P~ad  141 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYP-TIKGINFDLPH-VIE-------DAPSYPGVEHVGGDMFVSI----------PKAD  141 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCT-TSEEEEEECTT-TTT-------TCCCCTTEEEEECCTTTCC----------CCCS
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCC-CCeEEEcccHH-hhh-------hcccCCceEEecccccccC----------CCcc
Confidence            457899999999999999999998 89999999954 332       2344578999999986542          2345


Q ss_pred             EEEEcCC-----ccchHHHHHHHHhccCCCeEEEEecccc
Q 026461          150 YAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLW  184 (238)
Q Consensus       150 ~V~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (238)
                      ++++...     .......++++.+.|+|||.+++.+...
T Consensus       142 ~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~  181 (243)
T d1kyza2         142 AVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECIL  181 (243)
T ss_dssp             CEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEE
T ss_pred             eEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEe
Confidence            5555432     2335678999999999999777766553

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.54  E-value=1.7e-08  Score=79.97  Aligned_cols=99  Identities=14%  Similarity=0.161  Sum_probs=69.8

Q ss_pred             HhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHH
Q 026461           56 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL  135 (238)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l  135 (238)
                      +...+-+-..+...+..+|||||||+|..|..|++.   ..+|++||+++.+++.+++.+.   ..++++++++|+.++ 
T Consensus        15 ~~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~---~~~v~aIE~D~~l~~~l~~~~~---~~~n~~ii~~D~l~~-   87 (245)
T d1yuba_          15 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQF-   87 (245)
T ss_dssp             TTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTT-
T ss_pred             HHHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh---cCceeEeeecccchhhhhhhhh---hccchhhhhhhhhcc-
Confidence            333333334445567789999999999999999987   3599999999999988876553   235799999999876 


Q ss_pred             HHHHhcccCCCCeeEEEEcCCccchHHHHHHH
Q 026461          136 DQLLKYSENEGSFDYAFVDADKDNYCNYHERL  167 (238)
Q Consensus       136 ~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~  167 (238)
                       .+     +...++.|+.+.+-.-..+.+..+
T Consensus        88 -~~-----~~~~~~~vv~NLPY~Ist~il~~~  113 (245)
T d1yuba_          88 -QF-----PNKQRYKIVGNIPYHLSTQIIKKV  113 (245)
T ss_dssp             -TC-----CCSSEEEEEEECCSSSCHHHHHHH
T ss_pred             -cc-----ccceeeeEeeeeehhhhHHHHHHH
Confidence             22     235666677666544444544444

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=5.2e-07  Score=67.88  Aligned_cols=100  Identities=17%  Similarity=0.170  Sum_probs=70.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHH--HHHHhcccCCC
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL--DQLLKYSENEG  146 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l--~~~~~~~~~~~  146 (238)
                      .+..+|||+||+.|.++..+++.....++++++|+.+..           .. +.+.++++|..+..  ...... ....
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~-----------~i-~~~~~~~~d~~~~~~~~~~~~~-~~~~   87 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD-----------PI-VGVDFLQGDFRDELVMKALLER-VGDS   87 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC-----------CC-TTEEEEESCTTSHHHHHHHHHH-HTTC
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc-----------cc-CCceEeecccccchhhhhhhhh-ccCc
Confidence            466799999999999999999887768999999987631           22 45889999875421  111110 1257


Q ss_pred             CeeEEEEcCCccc--------------hHHHHHHHHhccCCCeEEEEec
Q 026461          147 SFDYAFVDADKDN--------------YCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       147 ~fD~V~~d~~~~~--------------~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ++|+|+.|..+.-              ....+..+.+.|++||.+|+--
T Consensus        88 ~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~  136 (180)
T d1ej0a_          88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV  136 (180)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE
Confidence            8999999964311              1233444568999999999874

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=4.5e-07  Score=71.82  Aligned_cols=105  Identities=12%  Similarity=0.016  Sum_probs=70.6

Q ss_pred             cHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH
Q 026461           55 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV  134 (238)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (238)
                      ++....-+...+...+...|||||||.|..|..|++.   ..+|++||+++.+++..++.+..   .++++++.+|+.++
T Consensus         6 d~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~~---~~~~~ii~~D~l~~   79 (252)
T d1qyra_           6 DQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGER---LDQLTVIELDRDLAARLQTHPFL---GPKLTIYQQDAMTF   79 (252)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT---CSCEEEECCCHHHHHHHHTCTTT---GGGEEEECSCGGGC
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc---CCceEEEEeccchhHHHHHHhhh---ccchhHHhhhhhhh
Confidence            3444444444555667789999999999999999985   45899999999999988874322   35799999999873


Q ss_pred             -HHHHHhcccCCCCeeEEEEcCCccchHHHHHHHH
Q 026461          135 -LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM  168 (238)
Q Consensus       135 -l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~  168 (238)
                       +..+...   .+.--.|+.+-+-.-..+.+..+.
T Consensus        80 ~~~~~~~~---~~~~~~vvgNlPY~Iss~Il~~l~  111 (252)
T d1qyra_          80 NFGELAEK---MGQPLRVFGNLPYNISTPLMFHLF  111 (252)
T ss_dssp             CHHHHHHH---HTSCEEEEEECCTTTHHHHHHHHH
T ss_pred             cccccccc---cCCCeEEEecchHHHHHHHHHHhc
Confidence             3332211   123235666655444455555543

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.34  E-value=3.9e-06  Score=71.30  Aligned_cols=123  Identities=16%  Similarity=0.108  Sum_probs=94.2

Q ss_pred             CCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCC------------CEEEEEeCCchhHHHHHHHHH
Q 026461           49 WAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPED------------GQITAIDVNRETYEIGLPIIK  116 (238)
Q Consensus        49 ~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~------------~~v~~iD~~~~~~~~a~~~~~  116 (238)
                      .|....++....++..++......+|+|-.||+|...+.+.+.+...            ..+.|+|+++.....|+.++.
T Consensus       141 ~G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~  220 (425)
T d2okca1         141 AGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY  220 (425)
T ss_dssp             CGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred             chhhccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhh
Confidence            45666778888999888887778899999999999998887765321            349999999999999999988


Q ss_pred             HcCCC-CcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCcc--------------------chHHHHHHHHhccCCCe
Q 026461          117 KAGVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--------------------NYCNYHERLMKLLKVGG  175 (238)
Q Consensus       117 ~~~~~-~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~--------------------~~~~~~~~~~~~L~~gG  175 (238)
                      ..+.. +...+..+|..+.        +....||+|+.+.+-.                    ....++..+..+|++||
T Consensus       221 l~g~~~~~~~i~~~d~l~~--------~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G  292 (425)
T d2okca1         221 LHGIGTDRSPIVCEDSLEK--------EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGG  292 (425)
T ss_dssp             HTTCCSSCCSEEECCTTTS--------CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEE
T ss_pred             hcCCccccceeecCchhhh--------hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCC
Confidence            87765 3456778887653        1257899999885421                    12358888899999999


Q ss_pred             EEEE
Q 026461          176 IAVY  179 (238)
Q Consensus       176 ~lv~  179 (238)
                      .+++
T Consensus       293 ~~~i  296 (425)
T d2okca1         293 RAAV  296 (425)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            5443

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=98.21  E-value=6.5e-07  Score=70.53  Aligned_cols=76  Identities=9%  Similarity=0.142  Sum_probs=63.3

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCC--------CCcEEEEecchhHHHHHHHhccc
Q 026461           72 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--------DHKINFIESEALSVLDQLLKYSE  143 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--------~~~v~~~~~d~~~~l~~~~~~~~  143 (238)
                      .+|||+.+|.|.-++.+|..   +++|+++|.+|......++++.+...        ..+++++++|+.+++...     
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~---G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~-----  161 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI-----  161 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC-----
T ss_pred             CEEEECCCcccHHHHHHHhC---CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhcc-----
Confidence            48999999999999999986   56899999999988888777765432        237999999999988765     


Q ss_pred             CCCCeeEEEEcCC
Q 026461          144 NEGSFDYAFVDAD  156 (238)
Q Consensus       144 ~~~~fD~V~~d~~  156 (238)
                       ..+||+|++|..
T Consensus       162 -~~~~DvIYlDPM  173 (250)
T d2oyra1         162 -TPRPQVVYLDPM  173 (250)
T ss_dssp             -SSCCSEEEECCC
T ss_pred             -CCCCCEEEECCC
Confidence             578999999963

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=98.00  E-value=7.2e-06  Score=61.03  Aligned_cols=106  Identities=18%  Similarity=0.180  Sum_probs=71.1

Q ss_pred             HHhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhccc
Q 026461           65 LLRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE  143 (238)
Q Consensus        65 l~~~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~  143 (238)
                      .....+..+||-+|||. |..++.+++.+. ..+|+++|.+++..+.+++.    |...-+.....+..+.+.+..    
T Consensus        22 ~a~~~~g~~VlI~GaG~vGl~~~q~ak~~G-a~~Vi~~d~~~~r~~~a~~l----Ga~~~i~~~~~~~~~~v~~~t----   92 (174)
T d1jqba2          22 LADIEMGSSVVVIGIGAVGLMGIAGAKLRG-AGRIIGVGSRPICVEAAKFY----GATDILNYKNGHIEDQVMKLT----   92 (174)
T ss_dssp             HTTCCTTCCEEEECCSHHHHHHHHHHHTTT-CSCEEEECCCHHHHHHHHHH----TCSEEECGGGSCHHHHHHHHT----
T ss_pred             HhCCCCCCEEEEEcCCcchhhhhhhhhccc-ccccccccchhhhHHHHHhh----CccccccccchhHHHHHHHHh----
Confidence            34556777899999986 788888888764 45899999999998888754    542212222223333333331    


Q ss_pred             CCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461          144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      ....+|+||-....   ...++...++++|+|.+++-..
T Consensus        93 ~g~G~D~vid~~g~---~~~~~~a~~~~~~~G~iv~~G~  128 (174)
T d1jqba2          93 NGKGVDRVIMAGGG---SETLSQAVKMVKPGGIISNINY  128 (174)
T ss_dssp             TTSCEEEEEECSSC---TTHHHHHHHHEEEEEEEEECCC
T ss_pred             hccCcceEEEccCC---HHHHHHHHHHHhcCCEEEEEee
Confidence            24569998865432   3456777899999999988543

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=1.8e-05  Score=68.99  Aligned_cols=124  Identities=10%  Similarity=0.011  Sum_probs=87.7

Q ss_pred             CCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC-----------------CCEEEEEeCCchhHHHHH
Q 026461           50 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-----------------DGQITAIDVNRETYEIGL  112 (238)
Q Consensus        50 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~-----------------~~~v~~iD~~~~~~~~a~  112 (238)
                      +..-.++....++..++......+|+|-.||+|...+...+.+..                 ...++|+|+++.....|+
T Consensus       144 GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~  223 (524)
T d2ar0a1         144 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL  223 (524)
T ss_dssp             -CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred             chhccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHH
Confidence            445567788888888887777779999999999998877665421                 125899999999999999


Q ss_pred             HHHHHcCCCCc----EEEEecchhHHHHHHHhcccCCCCeeEEEEcCCcc-----------------chHHHHHHHHhcc
Q 026461          113 PIIKKAGVDHK----INFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----------------NYCNYHERLMKLL  171 (238)
Q Consensus       113 ~~~~~~~~~~~----v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~-----------------~~~~~~~~~~~~L  171 (238)
                      -++.-.+....    -.+..++....-..      ...+||+|+.+.+..                 ....++..+++.|
T Consensus       224 ~nl~l~~~~~~i~~~~~~~~~~~l~~d~~------~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~L  297 (524)
T d2ar0a1         224 MNCLLHDIEGNLDHGGAIRLGNTLGSDGE------NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETL  297 (524)
T ss_dssp             HHHHTTTCCCBGGGTBSEEESCTTSHHHH------TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHE
T ss_pred             HHHHhhcccccccccchhhhhhhhhhccc------ccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhc
Confidence            98877765432    23444554432111      247899999985421                 1234788899999


Q ss_pred             CCCeEEEE
Q 026461          172 KVGGIAVY  179 (238)
Q Consensus       172 ~~gG~lv~  179 (238)
                      ++||.+++
T Consensus       298 k~gGr~ai  305 (524)
T d2ar0a1         298 HPGGRAAV  305 (524)
T ss_dssp             EEEEEEEE
T ss_pred             cccCcEEE
Confidence            99996444

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.86  E-value=1.6e-05  Score=59.41  Aligned_cols=106  Identities=14%  Similarity=0.131  Sum_probs=68.5

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ..+..+||-+|+| .|..++.++.... ..+|+++|.+++..+.+++.    |...-+.....+..+..+...+. ....
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~G-a~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~i~~~-~~~~   99 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEEI----GADLTLNRRETSVEERRKAIMDI-THGR   99 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHHT----TCSEEEETTTSCHHHHHHHHHHH-TTTS
T ss_pred             CCCCCEEEEECCCccchhheecccccc-cccccccccccccccccccc----cceEEEeccccchHHHHHHHHHh-hCCC
Confidence            3456799999998 4778888888875 34899999999999888753    53221222223333332222111 2245


Q ss_pred             CeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461          147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      .+|+||-...   .+..++...++|++||.+++-.+
T Consensus       100 g~Dvvid~vG---~~~~~~~a~~~l~~~G~iv~~G~  132 (182)
T d1vj0a2         100 GADFILEATG---DSRALLEGSELLRRGGFYSVAGV  132 (182)
T ss_dssp             CEEEEEECSS---CTTHHHHHHHHEEEEEEEEECCC
T ss_pred             CceEEeecCC---chhHHHHHHHHhcCCCEEEEEee
Confidence            7999885432   23456777899999999887543

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.85  E-value=2.4e-05  Score=60.85  Aligned_cols=116  Identities=9%  Similarity=0.013  Sum_probs=69.2

Q ss_pred             CcHhHHHHHHHHHh--hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461           54 TAPDAGQLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA  131 (238)
Q Consensus        54 ~~~~~~~~l~~l~~--~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (238)
                      .++...++....-+  ..+..+|+|+|||.|+++..++...+ ...|.|+++--+..+. .......+. +-+++...+.
T Consensus        48 ~SR~~~Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~-v~~V~g~~iG~d~~e~-P~~~~~~~~-ni~~~~~~~d  124 (257)
T d2p41a1          48 VSRGSAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKN-VREVKGLTKGGPGHEE-PIPMSTYGW-NLVRLQSGVD  124 (257)
T ss_dssp             SSTHHHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTT-EEEEEEECCCSTTSCC-CCCCCSTTG-GGEEEECSCC
T ss_pred             cchHHHHHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcC-CCceeEEEecCccccC-Ccccccccc-ccccchhhhh
Confidence            45555555544333  34556899999999999999987643 4577777772110000 000000111 2356655443


Q ss_pred             hHHHHHHHhcccCCCCeeEEEEcCCccc---------hHHHHHHHHhccCCCeEEEEe
Q 026461          132 LSVLDQLLKYSENEGSFDYAFVDADKDN---------YCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       132 ~~~l~~~~~~~~~~~~fD~V~~d~~~~~---------~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ...++        .+..|.|++|.....         ....++.+.+.|+|||.+|+.
T Consensus       125 v~~l~--------~~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvK  174 (257)
T d2p41a1         125 VFFIP--------PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK  174 (257)
T ss_dssp             TTTSC--------CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             HHhcC--------CCcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEE
Confidence            32222        578999999964321         235566677899999988884

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.85  E-value=2.1e-05  Score=59.50  Aligned_cols=106  Identities=14%  Similarity=0.087  Sum_probs=74.5

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEE---ecchhHHHHHHHhc
Q 026461           66 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI---ESEALSVLDQLLKY  141 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~---~~d~~~~l~~~~~~  141 (238)
                      ....+..+||-+|||. |..+..++.... ..+|+++|.+++.++.|++.    |..   .++   ..+..+.+.++.  
T Consensus        21 a~v~~G~tVlV~GaG~vGl~a~~~ak~~g-a~~Vi~~d~~~~rl~~a~~~----Ga~---~~~~~~~~~~~~~i~~~t--   90 (195)
T d1kola2          21 AGVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKAQ----GFE---IADLSLDTPLHEQIAALL--   90 (195)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHT----TCE---EEETTSSSCHHHHHHHHH--
T ss_pred             hCCCCCCEEEEECcCHHHHHHHHHHHhhc-ccceeeecccchhhHhhhhc----ccc---EEEeCCCcCHHHHHHHHh--
Confidence            4566788999999997 667788887765 67999999999999888765    432   222   233334333332  


Q ss_pred             ccCCCCeeEEEEcCCc------------cchHHHHHHHHhccCCCeEEEEeccc
Q 026461          142 SENEGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                        ....+|++|-....            ......++.+.+.++|||.+++-.+.
T Consensus        91 --~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~  142 (195)
T d1kola2          91 --GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLY  142 (195)
T ss_dssp             --SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCC
T ss_pred             --CCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeec
Confidence              24689999854321            11356889999999999999987653

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.84  E-value=3.8e-05  Score=56.86  Aligned_cols=103  Identities=18%  Similarity=0.278  Sum_probs=69.1

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           67 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        67 ~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      +..+..+||-+|+| .|..+..+++.+. ..+|+.+|.++...+.+++.    |...-+.....|..+.+.++     ..
T Consensus        25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~g-~~~v~~~~~~~~k~~~a~~~----Ga~~~i~~~~~~~~~~i~~~-----t~   94 (174)
T d1f8fa2          25 KVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQL----GATHVINSKTQDPVAAIKEI-----TD   94 (174)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHHH----TCSEEEETTTSCHHHHHHHH-----TT
T ss_pred             CCCCCCEEEEeCCCHHHhhhhhcccccc-cceeeeeccHHHHHHHHHHc----CCeEEEeCCCcCHHHHHHHH-----cC
Confidence            34566789999987 3445677777665 56889999999988888764    54221222223344444444     14


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      +.+|+||-..   .....++...++++++|.+++-..
T Consensus        95 gg~D~vid~~---G~~~~~~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2          95 GGVNFALEST---GSPEILKQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             SCEEEEEECS---CCHHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCCcEEEEcC---CcHHHHHHHHhcccCceEEEEEee
Confidence            6899998654   335667788899999999987543

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=0.0001  Score=54.19  Aligned_cols=106  Identities=13%  Similarity=0.085  Sum_probs=69.1

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           67 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        67 ~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ...+..+||-+|+| .|..+..++.... ..+|+++|.+++.++.+++.    |....+.....+..+....+...  ..
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G-~~~Vi~~d~~~~rl~~a~~~----Ga~~~~~~~~~~~~~~~~~~~~~--~g   95 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAKEI----GADLVLQISKESPQEIARKVEGQ--LG   95 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHT----TCSEEEECSSCCHHHHHHHHHHH--HT
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHcC-CceEEeccCCHHHHHHHHHh----CCccccccccccccccccccccc--CC
Confidence            44566799999997 4556677777765 45899999999999988764    54321222222322222222111  14


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      ..+|+||-..   .....++...+++++||.+++-..
T Consensus        96 ~g~Dvvid~~---G~~~~~~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2          96 CKPEVTIECT---GAEASIQAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             SCCSEEEECS---CCHHHHHHHHHHSCTTCEEEECSC
T ss_pred             CCceEEEecc---CCchhHHHHHHHhcCCCEEEEEec
Confidence            6899988644   335677888899999999988543

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.73  E-value=2.6e-05  Score=57.38  Aligned_cols=99  Identities=21%  Similarity=0.144  Sum_probs=66.7

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe-cchhHHHHHHHhcccC
Q 026461           67 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSEN  144 (238)
Q Consensus        67 ~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~l~~~~~~~~~  144 (238)
                      ...+..+||-+|+| .|..+..+++.+  +.+|+++|.+++.++.+++.    |..   .++. .+..+..+..      
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~a~~l----Ga~---~~i~~~~~~~~~~~~------   88 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMKM----GAD---HYIATLEEGDWGEKY------   88 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHHH----TCS---EEEEGGGTSCHHHHS------
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhc--cccccccccchhHHHHhhcc----CCc---EEeeccchHHHHHhh------
Confidence            45567899999998 677778888775  57999999999999988764    542   2222 2222333333      


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      .+.+|+|+..... .....++...+.|+++|.+++-.
T Consensus        89 ~~~~d~vi~~~~~-~~~~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2          89 FDTFDLIVVCASS-LTDIDFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             CSCEEEEEECCSC-STTCCTTTGGGGEEEEEEEEECC
T ss_pred             hcccceEEEEecC-CccchHHHHHHHhhccceEEEec
Confidence            5789998854221 11122455778999999998854

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.69  E-value=9.7e-05  Score=53.96  Aligned_cols=101  Identities=14%  Similarity=0.159  Sum_probs=65.6

Q ss_pred             HhhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           66 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      ....+..+||-+|+| .|..+..+++..  +.+|+++|.+++..+.+++.    |...-+.....|..+.+...      
T Consensus        23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~~~----Ga~~~i~~~~~~~~~~~~~~------   90 (166)
T d1llua2          23 TNARPGQWVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDAKLELARKL----GASLTVNARQEDPVEAIQRD------   90 (166)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHT----TCSEEEETTTSCHHHHHHHH------
T ss_pred             hCCCCCCEEEEeeccccHHHHHHHHHHc--CCccceecchhhHHHhhhcc----CccccccccchhHHHHHHHh------
Confidence            456677889999987 566677788776  47999999999988877653    54221222222232322222      


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ...+|.++.+...   ...++...++|+++|.+++-.
T Consensus        91 ~~g~~~~i~~~~~---~~~~~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2          91 IGGAHGVLVTAVS---NSAFGQAIGMARRGGTIALVG  124 (166)
T ss_dssp             HSSEEEEEECCSC---HHHHHHHHTTEEEEEEEEECC
T ss_pred             hcCCccccccccc---chHHHHHHHHhcCCcEEEEEE
Confidence            2455655555432   456778889999999998743

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.59  E-value=0.00027  Score=51.64  Aligned_cols=102  Identities=12%  Similarity=0.131  Sum_probs=68.4

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec----chhHHHHHHHhc
Q 026461           67 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES----EALSVLDQLLKY  141 (238)
Q Consensus        67 ~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~----d~~~~l~~~~~~  141 (238)
                      ...+..+||-+|+| .|..++.++...  +.+|+++|.+++..+.+++.    +..  ..+..-    +..+....+...
T Consensus        23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~--Ga~vi~v~~~~~r~~~a~~~----ga~--~~~~~~~~~~~~~~~~~~~~~~   94 (170)
T d1e3ja2          23 GVQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKNC----GAD--VTLVVDPAKEEESSIIERIRSA   94 (170)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHT----TCS--EEEECCTTTSCHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEcccccchhhHhhHhhh--cccccccchHHHHHHHHHHc----CCc--EEEeccccccccchhhhhhhcc
Confidence            45567899999998 677778888876  46999999999999888874    321  222221    112222222111


Q ss_pred             ccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          142 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                        ....+|+||-..   ..+..++.+.++++++|.+++-.
T Consensus        95 --~g~g~D~vid~~---g~~~~~~~a~~~~~~~G~iv~~G  129 (170)
T d1e3ja2          95 --IGDLPNVTIDCS---GNEKCITIGINITRTGGTLMLVG  129 (170)
T ss_dssp             --SSSCCSEEEECS---CCHHHHHHHHHHSCTTCEEEECS
T ss_pred             --cccCCceeeecC---CChHHHHHHHHHHhcCCceEEEe
Confidence              246799887543   33566778889999999999854

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.56  E-value=0.00023  Score=52.55  Aligned_cols=102  Identities=20%  Similarity=0.270  Sum_probs=70.7

Q ss_pred             hcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecc--hhHHHHHHHhcccC
Q 026461           68 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE--ALSVLDQLLKYSEN  144 (238)
Q Consensus        68 ~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d--~~~~l~~~~~~~~~  144 (238)
                      ..+..+||-+|||. |..++.+++.+. ..+|+.+|.+++..+.+++.    |...-++....|  ........     .
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~G-a~~Vi~~d~~~~r~~~a~~~----Ga~~~i~~~~~~~~~~~~~~~~-----~   95 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKAL----GATDCLNPRELDKPVQDVITEL-----T   95 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHT----TCSEEECGGGCSSCHHHHHHHH-----H
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhC-CceeeeeccchHHHHHHHHh----CCCcccCCccchhhhhhhHhhh-----h
Confidence            45667999999996 888899999876 57899999999998888764    543212211222  12222222     1


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCC-eEEEEecc
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT  182 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  182 (238)
                      .+.+|+||-..   ..+..++...+.+++| |.+++-..
T Consensus        96 ~~G~d~vie~~---G~~~~~~~a~~~~~~g~G~~v~vG~  131 (174)
T d1e3ia2          96 AGGVDYSLDCA---GTAQTLKAAVDCTVLGWGSCTVVGA  131 (174)
T ss_dssp             TSCBSEEEESS---CCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             cCCCcEEEEec---ccchHHHHHHHHhhcCCeEEEecCC
Confidence            57899998643   3466778888999996 99888543

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.53  E-value=0.00013  Score=59.28  Aligned_cols=60  Identities=7%  Similarity=0.051  Sum_probs=49.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV  134 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (238)
                      .+..|||||.|.|..|..|++... ..+|+++|+++..++..++.+.    .++++++++|+..+
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~-~~~v~~iE~D~~~~~~L~~~~~----~~~~~ii~~D~l~~  102 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKFE----GSPLQILKRDPYDW  102 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHTT----TSSCEEECSCTTCH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHhcc----CCCcEEEeCchhhc
Confidence            456899999999999999997632 2589999999999998887653    25699999998765

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00021  Score=52.53  Aligned_cols=99  Identities=16%  Similarity=0.131  Sum_probs=66.5

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           68 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        68 ~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ..+..+||-+|+  +.|..++.++...  +.+|++++.+++..+.+++    .|...-+.....|..+.+....    ..
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~--G~~vi~~~~~~~~~~~~~~----~Ga~~vi~~~~~~~~~~i~~~t----~~   95 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQ----NGAHEVFNHREVNYIDKIKKYV----GE   95 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTSTTHHHHHHHHH----CT
T ss_pred             CCCCCEEEEEecccccccccccccccc--Ccccccccccccccccccc----cCcccccccccccHHHHhhhhh----cc
Confidence            446678999996  5777888889886  4789999988877776654    4653322222233334333331    24


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      ..+|+|+-...    ...++...++|+++|.++.-
T Consensus        96 ~g~d~v~d~~g----~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          96 KGIDIIIEMLA----NVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             TCEEEEEESCH----HHHHHHHHHHEEEEEEEEEC
T ss_pred             CCceEEeeccc----HHHHHHHHhccCCCCEEEEE
Confidence            67998885432    34678888999999998874

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.40  E-value=0.00019  Score=52.58  Aligned_cols=103  Identities=19%  Similarity=0.154  Sum_probs=67.7

Q ss_pred             hhcCCCEEEEEcc-c-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           67 RLVNAKKTIEIGV-F-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        67 ~~~~~~~vLeiG~-G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      ...++.+||-+|+ | .|..++.++.... ..+|+++|.+++..+.+++.    |..   .++..+..+..+...+. ..
T Consensus        24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g-~~~V~~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~~~~~-~~   94 (170)
T d1jvba2          24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKRA----GAD---YVINASMQDPLAEIRRI-TE   94 (170)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHH-TT
T ss_pred             CCCCCCEEEEEeccccceeeeeecccccc-cccccccccchhhHHHHHHc----CCc---eeeccCCcCHHHHHHHH-hh
Confidence            3556779999996 3 5566677777654 57999999999988888764    542   22333322333222211 12


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      .+.||+|+-..   .-...++...++++|||.+++-.
T Consensus        95 ~~~~d~vid~~---g~~~~~~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2          95 SKGVDAVIDLN---NSEKTLSVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             TSCEEEEEESC---CCHHHHTTGGGGEEEEEEEEECC
T ss_pred             cccchhhhccc---ccchHHHhhhhhcccCCEEEEec
Confidence            46799888644   33556677789999999998754

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.36  E-value=0.00033  Score=51.40  Aligned_cols=98  Identities=15%  Similarity=0.148  Sum_probs=64.9

Q ss_pred             hcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecc--hhH-HHHHHHhccc
Q 026461           68 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE--ALS-VLDQLLKYSE  143 (238)
Q Consensus        68 ~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d--~~~-~l~~~~~~~~  143 (238)
                      ..+...||-+|+|. |..++.++.... ..+|+++|.+++..+.+++.    +..   .++..+  ..+ ..+..     
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g-~~~vv~~~~~~~k~~~~~~~----ga~---~~i~~~~~~~~~~~~~~-----   96 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAERL----GAD---HVVDARRDPVKQVMELT-----   96 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHHHT----TCS---EEEETTSCHHHHHHHHT-----
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhc-CcccccccchhHHHHHHhhc----ccc---eeecCcccHHHHHHHhh-----
Confidence            34567899999874 445567776655 56899999999888877754    432   333322  112 22221     


Q ss_pred             CCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ....+|+||-...   ....++...+.|+++|.+++-.
T Consensus        97 ~~~g~d~vid~~g---~~~~~~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2          97 RGRGVNVAMDFVG---SQATVDYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             TTCCEEEEEESSC---CHHHHHHGGGGEEEEEEEEECC
T ss_pred             CCCCceEEEEecC---cchHHHHHHHHHhCCCEEEEEe
Confidence            2457999886543   3456778889999999999754

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.23  E-value=0.0011  Score=48.76  Aligned_cols=104  Identities=15%  Similarity=0.205  Sum_probs=64.1

Q ss_pred             hcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch-hHHHHHHHhcccCC
Q 026461           68 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA-LSVLDQLLKYSENE  145 (238)
Q Consensus        68 ~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~l~~~~~~~~~~  145 (238)
                      ..+...|+-+|+|. |..++.++..+. ..+|+++|.+++.++.|++.    |...-++....+. .+......    ..
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G-~~~Vi~vd~~~~kl~~Ak~~----GA~~~in~~~~~~~~~~~~~~~----~g   97 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAG-ASRIIGIDLNKDKFEKAMAV----GATECISPKDSTKPISEVLSEM----TG   97 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHH----TCSEEECGGGCSSCHHHHHHHH----HT
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcC-CceEEEecCcHHHHHHHHhc----CCcEEECccccchHHHHHHHHh----cc
Confidence            45667899999984 455667777665 57999999999999999876    5432222222221 22222221    14


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHh-ccCCCeEEEEeccc
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMK-LLKVGGIAVYDNTL  183 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~-~L~~gG~lv~~~~~  183 (238)
                      ..+|+++.....   ...+..... +++.+|.+++-...
T Consensus        98 ~G~d~vi~~~g~---~~~~~~a~~~~~~~~G~~v~vG~~  133 (176)
T d1d1ta2          98 NNVGYTFEVIGH---LETMIDALASCHMNYGTSVVVGVP  133 (176)
T ss_dssp             SCCCEEEECSCC---HHHHHHHHTTSCTTTCEEEECSCC
T ss_pred             ccceEEEEeCCc---hHHHHHHHHHhhcCCeEEEEEEcc
Confidence            689998876532   333344444 44566888875443

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.23  E-value=0.00078  Score=49.08  Aligned_cols=108  Identities=16%  Similarity=0.148  Sum_probs=74.0

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461           68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  146 (238)
Q Consensus        68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  146 (238)
                      ..+|.+|+-||+| .|..++..|..+  +++|+.+|.+++.++..+..+.     .+++....+...+.+.+       .
T Consensus        29 gv~pa~V~ViGaGvaG~~A~~~A~~l--GA~V~~~D~~~~~l~~l~~~~~-----~~~~~~~~~~~~l~~~~-------~   94 (168)
T d1pjca1          29 GVKPGKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLFG-----SRVELLYSNSAEIETAV-------A   94 (168)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHG-----GGSEEEECCHHHHHHHH-------H
T ss_pred             CCCCcEEEEECCChHHHHHHHHHhhC--CCEEEEEeCcHHHHHHHHHhhc-----ccceeehhhhhhHHHhh-------c
Confidence            3478899999999 677888888887  5899999999999988877653     34677766655554444       5


Q ss_pred             CeeEEEEcCCcc--chHH-HHHHHHhccCCCeEEEEeccccCcccc
Q 026461          147 SFDYAFVDADKD--NYCN-YHERLMKLLKVGGIAVYDNTLWGGTVA  189 (238)
Q Consensus       147 ~fD~V~~d~~~~--~~~~-~~~~~~~~L~~gG~lv~~~~~~~g~~~  189 (238)
                      ..|+|+.-.-.+  ..+. .-+...+.+|||.+||==.+-..|+..
T Consensus        95 ~aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIVDvaidqGG~~E  140 (168)
T d1pjca1          95 EADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQGGCVE  140 (168)
T ss_dssp             TCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTCTTCCSBT
T ss_pred             cCcEEEEeeecCCcccCeeecHHHHhhcCCCcEEEEeecCCCCccc
Confidence            789998763211  1111 124567888998877743344455443

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=97.23  E-value=0.00082  Score=49.39  Aligned_cols=103  Identities=14%  Similarity=0.220  Sum_probs=65.1

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecc--hhHHHHHHHhccc
Q 026461           67 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE--ALSVLDQLLKYSE  143 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d--~~~~l~~~~~~~~  143 (238)
                      ...+..+||-+|||. |..++.++.... ..+|+++|.+++.++.+++.    |...-++....|  ..+.....     
T Consensus        24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G-~~~Vi~~d~~~~kl~~a~~l----Ga~~~i~~~~~d~~~~~~~~~~-----   93 (174)
T d1p0fa2          24 KVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAIEL----GATECLNPKDYDKPIYEVICEK-----   93 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHHT----TCSEEECGGGCSSCHHHHHHHH-----
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcC-CceeeccCChHHHHHHHHHc----CCcEEEcCCCchhHHHHHHHHh-----
Confidence            355677999999984 445566777665 57899999999999998764    543222222233  22232222     


Q ss_pred             CCCCeeEEEEcCCccchHHHHHHHHhccC-CCeEEEEecc
Q 026461          144 NEGSFDYAFVDADKDNYCNYHERLMKLLK-VGGIAVYDNT  182 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~-~gG~lv~~~~  182 (238)
                      ..+.+|.||....   ....+......++ ++|.+++-.+
T Consensus        94 ~~~G~d~vid~~g---~~~~~~~~~~~~~~~~G~~v~vG~  130 (174)
T d1p0fa2          94 TNGGVDYAVECAG---RIETMMNALQSTYCGSGVTVVLGL  130 (174)
T ss_dssp             TTSCBSEEEECSC---CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             cCCCCcEEEEcCC---CchHHHHHHHHHHHhcCceEEEEE
Confidence            2568999997653   2445555555555 4688887543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.22  E-value=0.00059  Score=49.49  Aligned_cols=101  Identities=18%  Similarity=0.180  Sum_probs=65.8

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           66 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      ....+..+||-+|+|. |..++.++...  +.+|++++.+++.++.+++    .|...-+.....|..+.+...      
T Consensus        23 ~~~~~g~~vlv~G~G~iG~~a~~~a~~~--g~~v~~~~~~~~r~~~~k~----~Ga~~~~~~~~~~~~~~~~~~------   90 (168)
T d1rjwa2          23 TGAKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKE----LGADLVVNPLKEDAAKFMKEK------   90 (168)
T ss_dssp             HTCCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTCSEEECTTTSCHHHHHHHH------
T ss_pred             hCCCCCCEEEEeecccchhhhhHHHhcC--CCeEeccCCCHHHhhhhhh----cCcceecccccchhhhhcccc------
Confidence            3456677999999985 44556666664  4689999999998887765    354321222223344444443      


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ...+|.++.+..   ....++...++++++|.+++-.
T Consensus        91 ~~~~~~~v~~~~---~~~~~~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2          91 VGGVHAAVVTAV---SKPAFQSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             HSSEEEEEESSC---CHHHHHHHHHHEEEEEEEEECC
T ss_pred             cCCCceEEeecC---CHHHHHHHHHHhccCCceEecc
Confidence            245566666653   3566788889999999999854

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.98  E-value=0.0018  Score=46.97  Aligned_cols=89  Identities=17%  Similarity=0.233  Sum_probs=58.0

Q ss_pred             CEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           72 KKTIEIGVFTGYSLLLTALTI---PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      ++|+=||||  ..+..+|..+   ....+|+++|.+++..+.+++.    +.   +.....+.... .        ....
T Consensus         2 k~I~IIG~G--~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~---~~~~~~~~~~~-~--------~~~~   63 (171)
T d2g5ca2           2 QNVLIVGVG--FMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI---IDEGTTSIAKV-E--------DFSP   63 (171)
T ss_dssp             CEEEEESCS--HHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS---CSEEESCGGGG-G--------GTCC
T ss_pred             CEEEEEccC--HHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hc---chhhhhhhhhh-h--------cccc
Confidence            368889985  4444333333   2246899999999988888764    32   22222222111 0        2578


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEE
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAV  178 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv  178 (238)
                      |+|++..+.....+.++.+.+.++++.+++
T Consensus        64 dlIila~p~~~~~~vl~~l~~~~~~~~ii~   93 (171)
T d2g5ca2          64 DFVMLSSPVRTFREIAKKLSYILSEDATVT   93 (171)
T ss_dssp             SEEEECSCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             ccccccCCchhhhhhhhhhhcccccccccc
Confidence            999998888788888888888888865544

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.0014  Score=47.92  Aligned_cols=103  Identities=13%  Similarity=0.128  Sum_probs=67.1

Q ss_pred             hhcCCCEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           67 RLVNAKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        67 ~~~~~~~vLeiG~G--~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      +..+..+||-.|++  .|..++.+++..  +.+|++++.+++..+.+++.    |...-+.....|..+.+.++.    .
T Consensus        25 ~l~~g~~Vlv~ga~g~vG~~~iqlak~~--Ga~Vi~~~~s~~k~~~~~~l----Ga~~vi~~~~~d~~~~v~~~t----~   94 (179)
T d1qora2          25 EIKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALKA----GAWQVINYREEDLVERLKEIT----G   94 (179)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHH----TCSEEEETTTSCHHHHHHHHT----T
T ss_pred             CCCCCCEEEEEccccccchHHHHHHHHh--CCeEeecccchHHHHHHHhc----CCeEEEECCCCCHHHHHHHHh----C
Confidence            34556789988655  566778888875  58999999999988887754    643222223344444444432    2


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ...+|+|+-....    +.+......++++|.+++-...
T Consensus        95 g~g~d~v~d~~g~----~~~~~~~~~l~~~G~~v~~g~~  129 (179)
T d1qora2          95 GKKVRVVYDSVGR----DTWERSLDCLQRRGLMVSFGNS  129 (179)
T ss_dssp             TCCEEEEEECSCG----GGHHHHHHTEEEEEEEEECCCT
T ss_pred             CCCeEEEEeCccH----HHHHHHHHHHhcCCeeeecccc
Confidence            4678976644332    3456778999999988774433

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.0021  Score=46.65  Aligned_cols=98  Identities=17%  Similarity=0.214  Sum_probs=65.2

Q ss_pred             HhhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461           66 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  144 (238)
                      ....+..+||-+|+| .|..++.+++.+  +.+++.+|.+++..+.+++.    |..   .++...-.+....      .
T Consensus        26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~--Ga~~i~~~~~~~~~~~a~~l----Gad---~~i~~~~~~~~~~------~   90 (168)
T d1uufa2          26 WQAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKAL----GAD---EVVNSRNADEMAA------H   90 (168)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHH----TCS---EEEETTCHHHHHT------T
T ss_pred             hCCCCCCEEEEeccchHHHHHHHHhhcc--cccchhhccchhHHHHHhcc----CCc---EEEECchhhHHHH------h
Confidence            345677899999987 466777888876  46888999999988877653    542   2333222222221      1


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ...+|.++-.....   ..++...++++++|.+++-.
T Consensus        91 ~~~~D~vid~~g~~---~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1uufa2          91 LKSFDFILNTVAAP---HNLDDFTTLLKRDGTMTLVG  124 (168)
T ss_dssp             TTCEEEEEECCSSC---CCHHHHHTTEEEEEEEEECC
T ss_pred             cCCCceeeeeeecc---hhHHHHHHHHhcCCEEEEec
Confidence            46899998764322   23456678999999999754

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.87  E-value=0.00089  Score=49.25  Aligned_cols=98  Identities=14%  Similarity=0.078  Sum_probs=63.0

Q ss_pred             hcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461           68 LVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  145 (238)
Q Consensus        68 ~~~~~~vLeiG--~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  145 (238)
                      ..+..+||-.|  .|.|..++.+|..+  +.+++++.-+++..+.++    +.|...-+.....|..+.+.+.    ...
T Consensus        23 ~~~g~~VlI~ga~g~vG~~~iqla~~~--g~~vi~~~~~~~~~~~l~----~~Ga~~vi~~~~~~~~~~v~~~----t~~   92 (183)
T d1pqwa_          23 LSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLS----RLGVEYVGDSRSVDFADEILEL----TDG   92 (183)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHH----TTCCSEEEETTCSTHHHHHHHH----TTT
T ss_pred             CCCCCEEEEECCCCCcccccchhhccc--cccceeeecccccccccc----cccccccccCCccCHHHHHHHH----hCC
Confidence            44567888876  45677788888876  478888888877666555    3464321221222333433333    124


Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      .++|+||-...    .+.++.++++|+++|.++.
T Consensus        93 ~g~d~v~d~~g----~~~~~~~~~~l~~~G~~v~  122 (183)
T d1pqwa_          93 YGVDVVLNSLA----GEAIQRGVQILAPGGRFIE  122 (183)
T ss_dssp             CCEEEEEECCC----THHHHHHHHTEEEEEEEEE
T ss_pred             CCEEEEEeccc----chHHHHHHHHhcCCCEEEE
Confidence            68999996543    2466778899999999887

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.71  E-value=0.0029  Score=46.01  Aligned_cols=100  Identities=16%  Similarity=0.244  Sum_probs=64.3

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe--cchhHHHHHHHhccc
Q 026461           67 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSE  143 (238)
Q Consensus        67 ~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~l~~~~~~~~  143 (238)
                      ...+..+||-.|+| .|..++.++..+. ...|+++|.+++..+.+++.    |...-+.+..  .+..+.+...     
T Consensus        25 ~~~~G~tVlI~GaGGvG~~aiq~ak~~G-~~~vi~~~~~~~k~~~ak~l----Ga~~~i~~~~~~~~~~~~~~~~-----   94 (176)
T d2fzwa2          25 KLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAKEF----GATECINPQDFSKPIQEVLIEM-----   94 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHHH----TCSEEECGGGCSSCHHHHHHHH-----
T ss_pred             CCCCCCEEEEecchhHHHHHHHHHHHHh-cCceEEEcccHHHHHHHHHh----CCcEEEeCCchhhHHHHHHHHH-----
Confidence            35567789998876 4445666777665 57899999999998888764    5432222211  1222333332     


Q ss_pred             CCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ..+.+|+||-...   ....++....++++||.+++
T Consensus        95 ~~~g~D~vid~~G---~~~~~~~~~~~~~~g~~~~~  127 (176)
T d2fzwa2          95 TDGGVDYSFECIG---NVKVMRAALEACHKGWGVSV  127 (176)
T ss_dssp             TTSCBSEEEECSC---CHHHHHHHHHTBCTTTCEEE
T ss_pred             cCCCCcEeeecCC---CHHHHHHHHHhhcCCceeEE
Confidence            2568999986543   34566778888998865544

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.33  E-value=0.01  Score=43.00  Aligned_cols=101  Identities=14%  Similarity=0.262  Sum_probs=62.3

Q ss_pred             hhcCCCEEEEEccccc-HHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec-c-hhHHHHHHHhccc
Q 026461           67 RLVNAKKTIEIGVFTG-YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-E-ALSVLDQLLKYSE  143 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~G-~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d-~~~~l~~~~~~~~  143 (238)
                      +..+..+||-+|+|.+ ..+..++..+. ..+|+++|.+++..+.+++.    |...-+..... + ..+.....     
T Consensus        25 ~vk~GdtVlV~GaGG~G~~~~~~~~~~g-~~~Vi~~~~~~~k~~~a~~~----Ga~~~i~~~~~~~~~~~~~~~~-----   94 (176)
T d2jhfa2          25 KVTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKEV----GATECVNPQDYKKPIQEVLTEM-----   94 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHT----TCSEEECGGGCSSCHHHHHHHH-----
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHcC-CceEEeecCcHHHHHHHHHh----CCeeEEecCCchhHHHHHHHHH-----
Confidence            3556678999998644 45566666665 67999999999999988765    43221111111 1 12222222     


Q ss_pred             CCCCeeEEEEcCCccchHHHHHHHHhccCCC-eEEEEe
Q 026461          144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYD  180 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~  180 (238)
                      ..+.+|+||-...   ....++.....++++ |.+++-
T Consensus        95 ~~~G~D~vid~~G---~~~~~~~a~~~~~~~~g~~~~~  129 (176)
T d2jhfa2          95 SNGGVDFSFEVIG---RLDTMVTALSCCQEAYGVSVIV  129 (176)
T ss_dssp             TTSCBSEEEECSC---CHHHHHHHHHHBCTTTCEEEEC
T ss_pred             hcCCCCEEEecCC---chhHHHHHHHHHhcCCcceEEe
Confidence            2568999887643   345556666777775 666653

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.27  E-value=0.0087  Score=43.40  Aligned_cols=96  Identities=18%  Similarity=0.168  Sum_probs=62.3

Q ss_pred             HhhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhccc
Q 026461           66 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE  143 (238)
Q Consensus        66 ~~~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~  143 (238)
                      ....+..+||-.|.  +.|..++.+++..  +.+|++++.+++..+.+++    .|.+.-+     |..+.......   
T Consensus        23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~--G~~vi~~~~~~~~~~~~~~----lGa~~~i-----~~~~~~~~~~~---   88 (171)
T d1iz0a2          23 AQARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLA----LGAEEAA-----TYAEVPERAKA---   88 (171)
T ss_dssp             TTCCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHH----TTCSEEE-----EGGGHHHHHHH---
T ss_pred             hCCCCCCEEEEEeccccchhhhhhhhccc--ccccccccccccccccccc----cccceee-----ehhhhhhhhhc---
Confidence            34556778998884  3467778888876  4799999999988877765    3643212     22232222211   


Q ss_pred             CCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                       ...+|+||--..     ..++...+.|+++|.++.-.
T Consensus        89 -~~g~D~v~d~~G-----~~~~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2          89 -WGGLDLVLEVRG-----KEVEESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             -TTSEEEEEECSC-----TTHHHHHTTEEEEEEEEEC-
T ss_pred             -cccccccccccc-----hhHHHHHHHHhcCCcEEEEe
Confidence             478999874222     23567789999999988743

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.26  E-value=0.012  Score=42.07  Aligned_cols=86  Identities=14%  Similarity=0.056  Sum_probs=57.0

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEE
Q 026461           73 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  151 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V  151 (238)
                      +|.=||+  |..+..+|..+. .+.+|+++|.+++.++.+++.    +.-+   ....+. +.          -...|+|
T Consensus         2 kI~iIG~--G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~----~~~~---~~~~~~-~~----------~~~~DiI   61 (165)
T d2f1ka2           2 KIGVVGL--GLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVER----QLVD---EAGQDL-SL----------LQTAKII   61 (165)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----TSCS---EEESCG-GG----------GTTCSEE
T ss_pred             EEEEEee--cHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHh----hccc---eeeeec-cc----------ccccccc
Confidence            5777887  555444444431 256899999998887776642    3322   111122 21          2678999


Q ss_pred             EEcCCccchHHHHHHHHhccCCCeEEE
Q 026461          152 FVDADKDNYCNYHERLMKLLKVGGIAV  178 (238)
Q Consensus       152 ~~d~~~~~~~~~~~~~~~~L~~gG~lv  178 (238)
                      |+.-+.......++.+.+.++++.+++
T Consensus        62 ilavp~~~~~~vl~~l~~~l~~~~iv~   88 (165)
T d2f1ka2          62 FLCTPIQLILPTLEKLIPHLSPTAIVT   88 (165)
T ss_dssp             EECSCHHHHHHHHHHHGGGSCTTCEEE
T ss_pred             cccCcHhhhhhhhhhhhhhccccccee
Confidence            998777778888899988888877665

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.22  E-value=0.0057  Score=44.81  Aligned_cols=102  Identities=12%  Similarity=0.080  Sum_probs=65.5

Q ss_pred             HhhcCCCEEEEEcccc--cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhccc
Q 026461           66 LRLVNAKKTIEIGVFT--GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE  143 (238)
Q Consensus        66 ~~~~~~~~vLeiG~G~--G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~  143 (238)
                      .+..+..+||-.|++.  |..++.+++..  +.+|+++..+++..+.+++.    |...-+.....+..+......    
T Consensus        25 ~~v~~G~~VlV~ga~ggvG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~~----Ga~~vi~~~~~~~~~~~~~~~----   94 (182)
T d1v3va2          25 CGVKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQI----GFDAAFNYKTVNSLEEALKKA----   94 (182)
T ss_dssp             TCCCSSCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT----TCSEEEETTSCSCHHHHHHHH----
T ss_pred             hCCCCCCEEEEEeCCCchhHHHHHHHHcc--CCEEEEeCCCHHHHHHHHhh----hhhhhcccccccHHHHHHHHh----
Confidence            3445677899887754  55667788876  57999999998877666653    543222222223333322221    


Q ss_pred             CCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      ....+|+||-...    .+.++..+++|+++|.++.-.
T Consensus        95 ~~~Gvd~v~D~vG----~~~~~~~~~~l~~~G~~v~~G  128 (182)
T d1v3va2          95 SPDGYDCYFDNVG----GEFLNTVLSQMKDFGKIAICG  128 (182)
T ss_dssp             CTTCEEEEEESSC----HHHHHHHGGGEEEEEEEEECC
T ss_pred             hcCCCceeEEecC----chhhhhhhhhccCCCeEEeec
Confidence            2568999875432    457788899999999988743

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=96.22  E-value=0.0082  Score=43.48  Aligned_cols=101  Identities=15%  Similarity=0.232  Sum_probs=60.9

Q ss_pred             hhcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecc-h-hHHHHHHHhccc
Q 026461           67 RLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-A-LSVLDQLLKYSE  143 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~G~-~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d-~-~~~l~~~~~~~~  143 (238)
                      +..+..+||-+|+|.+. .+..++.... ..+|+++|.+++..+.+++.    |...-++....+ . .+.....     
T Consensus        25 ~~k~g~~VlI~G~Gg~g~~~~~~~~~~g-~~~Vi~~~~~~~rl~~a~~~----GAd~~in~~~~~~~~~~~~~~~-----   94 (175)
T d1cdoa2          25 KVEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAKVF----GATDFVNPNDHSEPISQVLSKM-----   94 (175)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHT----TCCEEECGGGCSSCHHHHHHHH-----
T ss_pred             CCCCCCEEEEEecCCccchHHHHHHHHh-hchheeecchHHHHHHHHHc----CCcEEEcCCCcchhHHHHHHhh-----
Confidence            35566789999998744 4455565554 67899999999998888753    643222221221 1 1222222     


Q ss_pred             CCCCeeEEEEcCCccchHHHHHHHHhccCCC-eEEEEe
Q 026461          144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYD  180 (238)
Q Consensus       144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~  180 (238)
                      ....+|+|+-....   ...+.....++++| |++++-
T Consensus        95 ~~~G~d~vid~~G~---~~~~~~a~~~~~~g~~~~~~~  129 (175)
T d1cdoa2          95 TNGGVDFSLECVGN---VGVMRNALESCLKGWGVSVLV  129 (175)
T ss_dssp             HTSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEEC
T ss_pred             ccCCcceeeeecCC---HHHHHHHHHHhhCCCcceeEE
Confidence            14689999866532   44455566666665 565543

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.17  E-value=0.015  Score=42.69  Aligned_cols=96  Identities=11%  Similarity=0.108  Sum_probs=63.8

Q ss_pred             CEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           72 KKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        72 ~~vLeiG--~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      ..||-.|  .|.|..++.+|+.+. ...|+++..+++......+   ..|...-++....+..+.+....     ...+|
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~G-a~~vi~~~~~~e~~~~l~~---~~gad~vi~~~~~~~~~~~~~~~-----~~GvD  102 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLLG-CSRVVGICGTQEKCLFLTS---ELGFDAAVNYKTGNVAEQLREAC-----PGGVD  102 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHTT-CSEEEEEESSHHHHHHHHH---HSCCSEEEETTSSCHHHHHHHHC-----TTCEE
T ss_pred             CEEEEECCCchhhHHHHHHHHHcC-CcceecccchHHHHhhhhh---cccceEEeeccchhHHHHHHHHh-----ccCce
Confidence            5788877  467888999999875 4578877777655444332   33543333444445555555552     46799


Q ss_pred             EEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          150 YAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       150 ~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      +||-...    .+.++..++.|+++|.++.-
T Consensus       103 vv~D~vG----g~~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2         103 VYFDNVG----GDISNTVISQMNENSHIILC  129 (187)
T ss_dssp             EEEESSC----HHHHHHHHTTEEEEEEEEEC
T ss_pred             EEEecCC----chhHHHHhhhccccccEEEe
Confidence            9974332    45678889999999999864

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.083  Score=40.57  Aligned_cols=83  Identities=11%  Similarity=0.043  Sum_probs=60.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH------HHHHHHhc
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY  141 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~~~~~~  141 (238)
                      .+.+.+|-.|++.|. +..+++.+ ..+.+|+.++.+++.++.+.+.+...+...++.++++|..+      .+....++
T Consensus         8 lk~Kv~lITGas~GI-G~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~   86 (257)
T d1xg5a_           8 WRDRLALVTGASGGI-GAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ   86 (257)
T ss_dssp             GTTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence            567889999977554 45555544 23689999999999999999988888877788888888753      22222222


Q ss_pred             ccCCCCeeEEEEcC
Q 026461          142 SENEGSFDYAFVDA  155 (238)
Q Consensus       142 ~~~~~~fD~V~~d~  155 (238)
                         .+.+|+++.++
T Consensus        87 ---~g~iD~lVnnA   97 (257)
T d1xg5a_          87 ---HSGVDICINNA   97 (257)
T ss_dssp             ---HCCCSEEEECC
T ss_pred             ---cCCCCEEEecc
Confidence               47899998765

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.74  E-value=0.014  Score=42.80  Aligned_cols=113  Identities=22%  Similarity=0.167  Sum_probs=67.6

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC---------------CCCc--EEEEe
Q 026461           67 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG---------------VDHK--INFIE  128 (238)
Q Consensus        67 ~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---------------~~~~--v~~~~  128 (238)
                      ...+|.+||-||+| .|..++..|..+  +++|+.+|.++...+..++...+.=               ....  -++..
T Consensus        25 g~V~pa~VvViGaGvaG~~Aa~~A~~l--GA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~  102 (183)
T d1l7da1          25 GTVPPARVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRK  102 (183)
T ss_dssp             EEECCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHHHTTCEECCC-----------------------C
T ss_pred             CCcCCcEEEEEcCcHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHH
Confidence            34578899999999 577888888887  5899999999999888886532110               0000  01111


Q ss_pred             cchhHHHHHHHhcccCCCCeeEEEEcCCcc--chHH-HHHHHHhccCCCeEEEEeccccCccc
Q 026461          129 SEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCN-YHERLMKLLKVGGIAVYDNTLWGGTV  188 (238)
Q Consensus       129 ~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~--~~~~-~~~~~~~~L~~gG~lv~~~~~~~g~~  188 (238)
                      .....+.+.+       ...|+|+.-.-.+  ..+. .-+.+.+.+|||.+||==.+-..|+.
T Consensus       103 ~~~~~l~~~l-------~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidqGGn~  158 (183)
T d1l7da1         103 KQAEAVLKEL-------VKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNC  158 (183)
T ss_dssp             CHHHHHHHHH-------TTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSS
T ss_pred             HHHHHHHHHH-------HhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecCCCcc
Confidence            1111222223       5789999763211  1111 22456788999888774444455543

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.71  E-value=0.044  Score=37.57  Aligned_cols=92  Identities=15%  Similarity=0.147  Sum_probs=59.4

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH--HHHHHHhcccCCCCee
Q 026461           73 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFD  149 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~l~~~~~~~~~~~~fD  149 (238)
                      +|+-+|+  |..+..+++.+. .+..|+.+|.+++.++.+++.+       .+.++.||+.+  .+...     .-...|
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-------~~~vi~Gd~~~~~~l~~~-----~i~~a~   67 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLEDA-----GIEDAD   67 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHHT-----TTTTCS
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-------hhhhccCcccchhhhhhc-----Chhhhh
Confidence            5777776  888888887663 2468999999999888776531       25788899875  45444     246788


Q ss_pred             EEEEcCCccchHHHHHHHHhccCCCeEEE
Q 026461          150 YAFVDADKDNYCNYHERLMKLLKVGGIAV  178 (238)
Q Consensus       150 ~V~~d~~~~~~~~~~~~~~~~L~~gG~lv  178 (238)
                      .+++--......-......+.+.+.-+++
T Consensus        68 ~vv~~t~~d~~N~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          68 MYIAVTGKEEVNLMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             EEEECCSCHHHHHHHHHHHHHTTCCCEEE
T ss_pred             hhcccCCcHHHHHHHHHHHHHcCCceEEE
Confidence            88764322222223344446677765554

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=95.70  E-value=0.014  Score=44.61  Aligned_cols=53  Identities=11%  Similarity=0.132  Sum_probs=41.4

Q ss_pred             HHHHHHh--hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHH
Q 026461           61 LMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK  116 (238)
Q Consensus        61 ~l~~l~~--~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~  116 (238)
                      ++..++.  ..++..|||.-+|+|..+....+.   +-+.+|+|++++.++.|++++.
T Consensus       201 L~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~~---~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         201 LIERIIRASSNPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCEEEECCCCchHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHc
Confidence            4444443  346679999999999987766654   3589999999999999999875

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=95.54  E-value=0.029  Score=44.19  Aligned_cols=94  Identities=12%  Similarity=-0.028  Sum_probs=63.7

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEE
Q 026461           73 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  152 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~  152 (238)
                      +|||+-||.|+.+.-+-.+-  --.+.++|+++.+++..+.|+     .  -.++.+|+.++-..-      -...|+++
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG--~~~~~a~e~d~~a~~~~~~N~-----~--~~~~~~Di~~~~~~~------~~~~dll~   66 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAG--FRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDE------FPKCDGII   66 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHT--CEEEEEEECCHHHHHHHHHHC-----C--SEEEESCTTTSCGGG------SCCCSEEE
T ss_pred             eEEEeCcCcCHHHHHHHHCC--CEEEEEEeCCHHHHHHHHHHC-----C--CCCccCChhhCCHhH------cccccEEe
Confidence            69999999999988876641  234679999999888887774     2  255778887753221      36799998


Q ss_pred             EcCCccch-----------------HHHHHHHHhccCCCeEEEEeccc
Q 026461          153 VDADKDNY-----------------CNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       153 ~d~~~~~~-----------------~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ...+++.+                 ..+++ +...++| -+++++|+.
T Consensus        67 ~g~PCq~fS~ag~~~g~~d~r~~l~~~~~~-~i~~~~P-k~~~lENV~  112 (324)
T d1dcta_          67 GGPPCQSWSEGGSLRGIDDPRGKLFYEYIR-ILKQKKP-IFFLAENVK  112 (324)
T ss_dssp             ECCCCTTTSSSSCCCCSSSHHHHHHHHHHH-HHHHHCC-SEEEEEEEG
T ss_pred             ecccccccccccccccccccccchHHHHHH-HHHhhCC-ceeeccccc
Confidence            76433221                 12222 3467788 588888874

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=95.36  E-value=0.31  Score=38.19  Aligned_cols=109  Identities=11%  Similarity=0.078  Sum_probs=69.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCC--CcEEEEecchhH-HHHHHHhcccCCC
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEALS-VLDQLLKYSENEG  146 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~-~l~~~~~~~~~~~  146 (238)
                      .++.|+.+||  |.-|..+--..+++.+++=+|. |+.++.-++.+...+..  .+..++..|..+ +...+.+.++...
T Consensus        89 g~~qvV~LGa--GlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~  165 (297)
T d2uyoa1          89 GIRQFVILAS--GLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS  165 (297)
T ss_dssp             TCCEEEEETC--TTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred             CCCeEEEeCc--ccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCC
Confidence            5678888988  5555544333344667777775 88888888888877654  456677777765 3344433211112


Q ss_pred             CeeEEEEc-C-----CccchHHHHHHHHhccCCCeEEEEecc
Q 026461          147 SFDYAFVD-A-----DKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       147 ~fD~V~~d-~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                      .- .+|+- +     .......+++.+..+..||+.|+++-.
T Consensus       166 ~p-tl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~  206 (297)
T d2uyoa1         166 AR-TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETS  206 (297)
T ss_dssp             SC-EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             CC-EEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence            22 44443 2     233456788888888999999999854

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=95.26  E-value=0.019  Score=47.43  Aligned_cols=53  Identities=13%  Similarity=0.103  Sum_probs=44.0

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHcCC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGV  120 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~  120 (238)
                      ..+...++|||+..|.++..++...+. ..+|+++|+++...+..++++...+.
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD  263 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence            345678999999999999988876542 36999999999999999999886543

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=95.24  E-value=0.032  Score=40.86  Aligned_cols=106  Identities=12%  Similarity=0.099  Sum_probs=64.0

Q ss_pred             hcCCCEEEEE--ccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH---HHHHHhc
Q 026461           68 LVNAKKTIEI--GVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV---LDQLLKY  141 (238)
Q Consensus        68 ~~~~~~vLei--G~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---l~~~~~~  141 (238)
                      ..+...+|-+  |+| .|..++.+|+.+  +.+|+++--+++..+...+.+++.|.+.-+..-..+..+.   +.+....
T Consensus        26 ~~~g~~vli~~ga~g~vG~~aiqlAk~~--Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~  103 (189)
T d1gu7a2          26 LTPGKDWFIQNGGTSAVGKYASQIGKLL--NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQ  103 (189)
T ss_dssp             CCTTTCEEEESCTTSHHHHHHHHHHHHH--TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCchHHHHHHHHHhhc--CCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhh
Confidence            4445567777  323 466778888886  4788888766667776777777778644332221222222   2221110


Q ss_pred             ccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          142 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       142 ~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                        ...++|+||-...    .+.+....+.|+++|.++.-.
T Consensus       104 --~g~~vdvv~D~vg----~~~~~~~~~~l~~~G~~v~~G  137 (189)
T d1gu7a2         104 --SGGEAKLALNCVG----GKSSTGIARKLNNNGLMLTYG  137 (189)
T ss_dssp             --HTCCEEEEEESSC----HHHHHHHHHTSCTTCEEEECC
T ss_pred             --ccCCceEEEECCC----cchhhhhhhhhcCCcEEEEEC
Confidence              1467999883221    345567789999999998754

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.24  E-value=0.033  Score=40.11  Aligned_cols=97  Identities=10%  Similarity=0.074  Sum_probs=60.7

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHc--CCCCcEE----EEecchhHHHHHHHhcccC
Q 026461           72 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKA--GVDHKIN----FIESEALSVLDQLLKYSEN  144 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~--~~~~~v~----~~~~d~~~~l~~~~~~~~~  144 (238)
                      ++|.-||+|.-+.++  +..+. .+.+|+.+|.+++.++..++.-...  .......    ....|..+.   +      
T Consensus         2 k~iaIiGaG~~G~~~--A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~------   70 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAF--AAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA---V------   70 (184)
T ss_dssp             CEEEEECCSHHHHHH--HHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH---H------
T ss_pred             CEEEEECccHHHHHH--HHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhH---h------
Confidence            578889996544433  32221 1578999999998887766542100  0000111    112222222   2      


Q ss_pred             CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                       ...|+|++--+.......++.+.++|+++.++++.
T Consensus        71 -~~aD~iii~v~~~~~~~~~~~i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          71 -KDADVILIVVPAIHHASIAANIASYISEGQLIILN  105 (184)
T ss_dssp             -TTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             -cCCCEEEEEEchhHHHHHHHHhhhccCCCCEEEEe
Confidence             67899999877777788999999999999877754

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.21  E-value=0.029  Score=43.28  Aligned_cols=55  Identities=9%  Similarity=-0.010  Sum_probs=43.6

Q ss_pred             HHHHHHh--hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc
Q 026461           61 LMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA  118 (238)
Q Consensus        61 ~l~~l~~--~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~  118 (238)
                      ++..++.  ..++..|||--+|+|..+......   +-+.+|+|++++.++.|++++...
T Consensus       196 L~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~l---gR~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         196 VIERLVRALSHPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             HHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhcCCCCEEEecCCCCcHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHh
Confidence            4444443  346779999999999987776664   349999999999999999999764

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.013  Score=46.70  Aligned_cols=75  Identities=16%  Similarity=0.089  Sum_probs=51.6

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCE-EEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      |.+|+|+.||.|+.+..|-.+-- ..+ +.++|+++.+++..+.|+      +...++.+|+.++......    ...+|
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~-~~~~~~a~E~~~~a~~~~~~n~------~~~~~~~~di~~~~~~~~~----~~~~D   70 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCI-PAQVVAAIDVNTVANEVYKYNF------PHTQLLAKTIEGITLEEFD----RLSFD   70 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTC-SEEEEEEECCCHHHHHHHHHHC------TTSCEECSCGGGCCHHHHH----HHCCS
T ss_pred             CCEEEEcCcCccHHHHHHHHcCC-CCeEEEEEECCHHHHHHHHHHC------CCCCcccCchhhCCHhHcC----CCCcc
Confidence            67899999999998877755311 223 679999999988888774      2355677787764322211    24789


Q ss_pred             EEEEcCC
Q 026461          150 YAFVDAD  156 (238)
Q Consensus       150 ~V~~d~~  156 (238)
                      +++...+
T Consensus        71 ll~ggpP   77 (343)
T d1g55a_          71 MILMSPP   77 (343)
T ss_dssp             EEEECCC
T ss_pred             EEEeecc
Confidence            9987644

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=95.05  E-value=0.015  Score=45.80  Aligned_cols=48  Identities=6%  Similarity=-0.080  Sum_probs=39.5

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA  118 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~  118 (238)
                      ..++..|||.-||+|..+......   +-+.+|+|++++.++.|++++.+.
T Consensus       248 s~~gdiVlDpF~GSGTT~~AA~~l---gR~~Ig~El~~~y~~~a~~Rl~~~  295 (320)
T d1booa_         248 TEPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFLDN  295 (320)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGSCS
T ss_pred             ccCCCEEEecCCCCcHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHHHhc
Confidence            456789999999999987766653   458999999999999999887543

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.97  E-value=0.0099  Score=46.10  Aligned_cols=52  Identities=15%  Similarity=0.172  Sum_probs=40.4

Q ss_pred             EEEEecchhHHHHHHHhcccCCCCeeEEEEcCCc----------cch----HHHHHHHHhccCCCeEEEEe
Q 026461          124 INFIESEALSVLDQLLKYSENEGSFDYAFVDADK----------DNY----CNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       124 v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~----------~~~----~~~~~~~~~~L~~gG~lv~~  180 (238)
                      -.|+.+|..+.++.+.     ++++|+||.|.+-          ..+    ...+.++.+.|+|+|.+++.
T Consensus         5 ~~~~~~D~le~l~~l~-----d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~   70 (279)
T d1eg2a_           5 HVYDVCDCLDTLAKLP-----DDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF   70 (279)
T ss_dssp             EEEEECCHHHHHHTSC-----TTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceEEechHHHHHhhCc-----CCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEe
Confidence            4678899999999883     5899999999752          122    45567778999999988874

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=94.93  E-value=0.078  Score=36.04  Aligned_cols=91  Identities=11%  Similarity=0.052  Sum_probs=60.8

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH--HHHHHHhcccCCCCeeE
Q 026461           73 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFDY  150 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~l~~~~~~~~~~~~fD~  150 (238)
                      +|+-+|+  |..+..+++.+. +..|+.+|.+++..+..+..        .+.++.||+.+  .+...     .-...+.
T Consensus         2 HivI~G~--g~~g~~l~~~L~-~~~i~vi~~d~~~~~~~~~~--------~~~~i~Gd~~~~~~L~~a-----~i~~A~~   65 (129)
T d2fy8a1           2 HVVICGW--SESTLECLRELR-GSEVFVLAEDENVRKKVLRS--------GANFVHGDPTRVSDLEKA-----NVRGARA   65 (129)
T ss_dssp             CEEEESC--CHHHHHHHHTSC-GGGEEEEESCTTHHHHHHHT--------TCEEEESCTTSHHHHHHT-----TCTTCSE
T ss_pred             EEEEECC--CHHHHHHHHHHc-CCCCEEEEcchHHHHHHHhc--------CccccccccCCHHHHHHh-----hhhcCcE
Confidence            4556654  889999999886 66789999999987765432        37889999865  44443     2567888


Q ss_pred             EEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          151 AFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       151 V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      +++........-..-...+.+.|...+++
T Consensus        66 vi~~~~~d~~n~~~~~~~r~~~~~~~iia   94 (129)
T d2fy8a1          66 VIVNLESDSETIHCILGIRKIDESVRIIA   94 (129)
T ss_dssp             EEECCSSHHHHHHHHHHHHHHCSSSCEEE
T ss_pred             EEEeccchhhhHHHHHHHHHHCCCceEEE
Confidence            88764332222333344567788765554

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=94.89  E-value=0.062  Score=42.49  Aligned_cols=96  Identities=9%  Similarity=-0.020  Sum_probs=65.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  149 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD  149 (238)
                      .+.+|||+-||.|+.+..|-.+ . ---+.++|+++.+++..+.|+...        .++|+.++....      ...+|
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~a-G-~~~v~a~e~d~~a~~~~~~N~~~~--------~~~Di~~~~~~~------~~~~D   73 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESC-G-AECVYSNEWDKYAQEVYEMNFGEK--------PEGDITQVNEKT------IPDHD   73 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT-T-CEEEEEECCCHHHHHHHHHHHSCC--------CBSCGGGSCGGG------SCCCS
T ss_pred             CCCeEEEECccccHHHHHHHHC-C-CeEEEEEeCCHHHHHHHHHHCCCC--------CcCchhcCchhh------cceee
Confidence            4569999999999999888764 2 234677999999999999887321        247776653321      46799


Q ss_pred             EEEEcCCccc-----------------hHHHHHHHHhccCCCeEEEEeccc
Q 026461          150 YAFVDADKDN-----------------YCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       150 ~V~~d~~~~~-----------------~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      +++...+++.                 +..+++. .+.++| -+++++|+.
T Consensus        74 ll~ggpPCq~fS~ag~~~g~~d~r~~l~~~~~~~-i~~~kP-~~~~lENV~  122 (327)
T d2c7pa1          74 ILCAGFPCQAFSISGKQKGFEDSRGTLFFDIARI-VREKKP-KVVFMENVK  122 (327)
T ss_dssp             EEEEECCCTTTCTTSCCCGGGSTTSCHHHHHHHH-HHHHCC-SEEEEEEEG
T ss_pred             eeecccccchhhhhhhhcCCcccchhHHHHHHHH-HhccCC-cEEecccch
Confidence            9987643221                 2333333 366788 578888874

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.64  E-value=0.15  Score=39.32  Aligned_cols=104  Identities=14%  Similarity=0.054  Sum_probs=67.4

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH------HHHHHHhcc
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYS  142 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~~~~~~~  142 (238)
                      +++|.-|--|+++.+..+++.+.  .+.+|+.++.+++..+.+.+.+...+.  ++.++.+|..+      ......++ 
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dvs~~~sv~~~~~~~~~~-   78 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRKE-   78 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEEecCCHHHHHHHHHHHHHh-
Confidence            46675554455556666665542  156999999999999999888887763  57888888753      22222222 


Q ss_pred             cCCCCeeEEEEcCCccc-----------h-----------HHHHHHHHhccCCCeEEEE
Q 026461          143 ENEGSFDYAFVDADKDN-----------Y-----------CNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       143 ~~~~~fD~V~~d~~~~~-----------~-----------~~~~~~~~~~L~~gG~lv~  179 (238)
                        .+.+|+++.++....           +           ....+.+.++|+++|.++.
T Consensus        79 --~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivn  135 (275)
T d1wmaa1          79 --YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVN  135 (275)
T ss_dssp             --HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             --cCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence              478999998754211           1           1233445678888887665

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=94.57  E-value=0.016  Score=44.22  Aligned_cols=51  Identities=16%  Similarity=0.241  Sum_probs=39.1

Q ss_pred             EEEecchhHHHHHHHhcccCCCCeeEEEEcCCcc----------c-------hHHHHHHHHhccCCCeEEEEe
Q 026461          125 NFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----------N-------YCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       125 ~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~----------~-------~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      +++++|..+.++.+.     ++++|+|+.|.+-.          .       +.+.++++.+.|+|+|.+++.
T Consensus         6 ~i~~gDcle~l~~lp-----d~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~   73 (256)
T d1g60a_           6 KIHQMNCFDFLDQVE-----NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (256)
T ss_dssp             SEEECCHHHHHHHSC-----TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEeccHHHHHhhCc-----CCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccc
Confidence            579999999999883     57999999996421          1       234566788999999988754

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.41  E-value=0.023  Score=41.45  Aligned_cols=98  Identities=9%  Similarity=0.044  Sum_probs=60.2

Q ss_pred             CCCEEEEEcccc--cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           70 NAKKTIEIGVFT--GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        70 ~~~~vLeiG~G~--G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      +..+||-.|.+.  |..++.|++..  +.+|+++--+++..+.+++.    |...-+.. ..+..+.....     ..+.
T Consensus        31 ~g~~VLI~gaaGGVG~~aiQlak~~--Ga~Viat~~s~~k~~~~~~l----Ga~~vi~~-~~~~~~~~~~~-----~~~g   98 (176)
T d1xa0a2          31 ERGPVLVTGATGGVGSLAVSMLAKR--GYTVEASTGKAAEHDYLRVL----GAKEVLAR-EDVMAERIRPL-----DKQR   98 (176)
T ss_dssp             GGCCEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCTTCHHHHHHT----TCSEEEEC-C---------C-----CSCC
T ss_pred             CCCEEEEEeccchHHHHHHHHHHHc--CCceEEecCchHHHHHHHhc----ccceeeec-chhHHHHHHHh-----hccC
Confidence            456799888654  44567788775  68999999999988888753    54322221 11111222211     2578


Q ss_pred             eeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      +|+|+-...    -..+....+.|++||.++.-...
T Consensus        99 vD~vid~vg----g~~~~~~l~~l~~~Griv~~G~~  130 (176)
T d1xa0a2          99 WAAAVDPVG----GRTLATVLSRMRYGGAVAVSGLT  130 (176)
T ss_dssp             EEEEEECST----TTTHHHHHHTEEEEEEEEECSCC
T ss_pred             cCEEEEcCC----chhHHHHHHHhCCCceEEEeecc
Confidence            998774432    23466778999999999875443

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=94.14  E-value=0.017  Score=44.50  Aligned_cols=120  Identities=11%  Similarity=0.026  Sum_probs=80.8

Q ss_pred             hHHHHHHHHHhh---cCCCEEEEEcccccHHHHHHHhhC---CC------------------------------------
Q 026461           57 DAGQLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTI---PE------------------------------------   94 (238)
Q Consensus        57 ~~~~~l~~l~~~---~~~~~vLeiG~G~G~~t~~la~~~---~~------------------------------------   94 (238)
                      -.+.++......   ..+..++|--||+|...+..+...   ++                                    
T Consensus        34 Laa~il~~al~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~  113 (249)
T d1o9ga_          34 LATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERRE  113 (249)
T ss_dssp             HHHHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccc
Confidence            344555544332   234579999999999988766522   10                                    


Q ss_pred             CCEEEEEeCCchhHHHH---HHHHHHcCCCCcEEEEecchhHHHH--HHHhcccCCCCeeEEEEcCCc------------
Q 026461           95 DGQITAIDVNRETYEIG---LPIIKKAGVDHKINFIESEALSVLD--QLLKYSENEGSFDYAFVDADK------------  157 (238)
Q Consensus        95 ~~~v~~iD~~~~~~~~a---~~~~~~~~~~~~v~~~~~d~~~~l~--~~~~~~~~~~~fD~V~~d~~~------------  157 (238)
                      ..++++.|+++.+++.|   ++|+...|+...+.+.+.|..+..+  ...    ....+++|+++.+-            
T Consensus       114 ~~~i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~----~~~~~GlIVtNPPYGERl~~~~~~~~  189 (249)
T d1o9ga_         114 QSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVL----AGSAPDVVLTDLPYGERTHWEGQVPG  189 (249)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHH----TTCCCSEEEEECCGGGSSSSSSCCCH
T ss_pred             cCCccccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhcc----CCCCCCEEEeCCCccccccccccchH
Confidence            12467889999888888   5699999999999999999865422  221    14678999998531            


Q ss_pred             cchHHHHHHHHhccCCCeEEEEe
Q 026461          158 DNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       158 ~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      +.+..+...+.+.+....++++.
T Consensus       190 ~~~~~~~~~l~~~~p~~s~~~it  212 (249)
T d1o9ga_         190 QPVAGLLRSLASALPAHAVIAVT  212 (249)
T ss_dssp             HHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             HHHHHHHHHHHccCCCCcEEEEe
Confidence            12456666677778766666664

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=93.70  E-value=0.031  Score=43.89  Aligned_cols=52  Identities=19%  Similarity=0.263  Sum_probs=40.4

Q ss_pred             EEEEecchhHHHHHHHhcccCCCCeeEEEEcCCcc-------------c----hHHHHHHHHhccCCCeEEEEe
Q 026461          124 INFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-------------N----YCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       124 v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~-------------~----~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      -.+++||..+.+..+.     ++++|+|+.|.+-.             .    +...+..+.+.|+++|.++++
T Consensus        13 ~~l~~GD~le~l~~l~-----~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~   81 (320)
T d1booa_          13 GSMYIGDSLELLESFP-----EESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD   81 (320)
T ss_dssp             EEEEESCHHHHGGGSC-----SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CEEEehhHHHHHhhCc-----cCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccc
Confidence            4889999999988873     57999999996421             1    234577778999999988874

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=92.73  E-value=0.096  Score=35.63  Aligned_cols=93  Identities=16%  Similarity=0.045  Sum_probs=54.8

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH--HHHHHHhcccCCCCe
Q 026461           72 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF  148 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~l~~~~~~~~~~~~f  148 (238)
                      |+++-||+  |..+..+++.+. .+..|+.+|.+++.++.++..    +    ...+.+|+.+  .+....     -...
T Consensus         1 k~~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~----~----~~~~~gd~~~~~~l~~a~-----i~~a   65 (134)
T d2hmva1           1 KQFAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY----A----THAVIANATEENELLSLG-----IRNF   65 (134)
T ss_dssp             CCEEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT----C----SEEEECCTTCTTHHHHHT-----GGGC
T ss_pred             CEEEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh----C----CcceeeecccchhhhccC-----Cccc
Confidence            34666666  777777776653 256899999999988876531    2    3566778765  454431     3577


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      |.|++..+.......+-.....+.+...++.
T Consensus        66 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~iia   96 (134)
T d2hmva1          66 EYVIVAIGANIQASTLTTLLLKELDIPNIWV   96 (134)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             cEEEEEcCchHHhHHHHHHHHHHcCCCcEEe
Confidence            8888764433223333333333344445543

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.41  E-value=0.8  Score=34.56  Aligned_cols=80  Identities=14%  Similarity=0.088  Sum_probs=57.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH------HHHHHHhcc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYS  142 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~~~~~~~  142 (238)
                      ++|.+|-.|.+. ..+..+++.+. .+.+|+.++.+++.++.+.+.+...+  .++.++.+|..+      .+....++ 
T Consensus         9 enKvalITGas~-GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~-   84 (251)
T d2c07a1           9 ENKVALVTGAGR-GIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTE-   84 (251)
T ss_dssp             SSCEEEEESTTS-HHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHh-
Confidence            567788888654 46666666653 35799999999999998888887765  358888888753      22333222 


Q ss_pred             cCCCCeeEEEEcC
Q 026461          143 ENEGSFDYAFVDA  155 (238)
Q Consensus       143 ~~~~~fD~V~~d~  155 (238)
                        .+.+|+++.++
T Consensus        85 --~g~iDilvnna   95 (251)
T d2c07a1          85 --HKNVDILVNNA   95 (251)
T ss_dssp             --CSCCCEEEECC
T ss_pred             --cCCceeeeecc
Confidence              58999998764

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=92.37  E-value=0.32  Score=33.76  Aligned_cols=97  Identities=15%  Similarity=0.048  Sum_probs=58.5

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH--HHHHHHhcccCCCCe
Q 026461           72 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF  148 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~l~~~~~~~~~~~~f  148 (238)
                      .+|+-+|+  |..+..+++.+. .+..|+.+|.+++......+....    ..+.++.||+.+  .+...     .-...
T Consensus         4 nHiII~G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~----~~~~vi~Gd~~d~~~L~~a-----~i~~a   72 (153)
T d1id1a_           4 DHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG----DNADVIPGDSNDSSVLKKA-----GIDRC   72 (153)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC----TTCEEEESCTTSHHHHHHH-----TTTTC
T ss_pred             CEEEEECC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc----CCcEEEEccCcchHHHHHh-----ccccC
Confidence            35777777  667777666552 246799999998765433333322    347899999875  45544     24678


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      |.|++........-..-...+.+.|...+++
T Consensus        73 ~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia  103 (153)
T d1id1a_          73 RAILALSDNDADNAFVVLSAKDMSSDVKTVL  103 (153)
T ss_dssp             SEEEECSSCHHHHHHHHHHHHHHTSSSCEEE
T ss_pred             CEEEEccccHHHHHHHHHHHHHhCCCCceEE
Confidence            8888764332222222333456667665554

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=92.36  E-value=0.38  Score=36.69  Aligned_cols=82  Identities=17%  Similarity=0.186  Sum_probs=56.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH------HHHHHHhcc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYS  142 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~~~~~~~  142 (238)
                      +.|.+|-.|++.|. +..+++.+ ..+.+|+.+|.+++.++.+.+.+...+...++.++.+|..+      .+....++ 
T Consensus         3 ~gK~alITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~-   80 (258)
T d1iy8a_           3 TDRVVLITGGGSGL-GRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER-   80 (258)
T ss_dssp             TTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH-
Confidence            56788888876554 34444433 22689999999999998888877776655678888888643      22222222 


Q ss_pred             cCCCCeeEEEEcC
Q 026461          143 ENEGSFDYAFVDA  155 (238)
Q Consensus       143 ~~~~~fD~V~~d~  155 (238)
                        .++.|+++.++
T Consensus        81 --~G~iDiLVnnA   91 (258)
T d1iy8a_          81 --FGRIDGFFNNA   91 (258)
T ss_dssp             --HSCCSEEEECC
T ss_pred             --hCCCCEEEECC
Confidence              47899998764

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.19  E-value=0.81  Score=32.55  Aligned_cols=73  Identities=11%  Similarity=0.126  Sum_probs=42.3

Q ss_pred             EEEEEcccc-cHHHHHHHhhCCCCCEEEEE-eCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeE
Q 026461           73 KTIEIGVFT-GYSLLLTALTIPEDGQITAI-DVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  150 (238)
Q Consensus        73 ~vLeiG~G~-G~~t~~la~~~~~~~~v~~i-D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~  150 (238)
                      +|.-||||. |..-+......+ +.+++++ |.+++..+.   ...+.+.....++. .|..+.+.        ....|+
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~-~~~i~ai~d~~~~~~~~---~~~~~~~~~~~~~~-~~~~~ll~--------~~~iD~   69 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAP-NATISGVASRSLEKAKA---FATANNYPESTKIH-GSYESLLE--------DPEIDA   69 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCT-TEEEEEEECSSHHHHHH---HHHHTTCCTTCEEE-SSHHHHHH--------CTTCCE
T ss_pred             EEEEEcCCHHHHHHHHHHHhCC-CCEEEEEEeCCcccccc---chhccccccceeec-CcHHHhhh--------ccccce
Confidence            678899974 322222333344 6788865 777665443   33455655444543 35555544        367999


Q ss_pred             EEEcCCcc
Q 026461          151 AFVDADKD  158 (238)
Q Consensus       151 V~~d~~~~  158 (238)
                      |++..+..
T Consensus        70 v~I~tp~~   77 (184)
T d1ydwa1          70 LYVPLPTS   77 (184)
T ss_dssp             EEECCCGG
T ss_pred             eeecccch
Confidence            99875443

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=91.71  E-value=0.12  Score=41.92  Aligned_cols=65  Identities=12%  Similarity=0.123  Sum_probs=43.9

Q ss_pred             ccCcHhHHHHHHHHHh-----hc--CCCEEEEEcccccHHHHHHHhhCC------CCCEEEEEeCCchhHHHHHHHHH
Q 026461           52 MGTAPDAGQLMAMLLR-----LV--NAKKTIEIGVFTGYSLLLTALTIP------EDGQITAIDVNRETYEIGLPIIK  116 (238)
Q Consensus        52 ~~~~~~~~~~l~~l~~-----~~--~~~~vLeiG~G~G~~t~~la~~~~------~~~~v~~iD~~~~~~~~a~~~~~  116 (238)
                      +.+++..++++...+.     ..  ++.+|+|+|+|.|..+.-++..+.      ...+++.+|.++...+.-++.+.
T Consensus        54 p~is~~Fg~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~  131 (365)
T d1zkda1          54 PEISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  131 (365)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             CchHHHHHHHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence            3445555555543321     22  334899999999999887776543      24579999999987777666654

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.45  E-value=0.47  Score=35.96  Aligned_cols=83  Identities=17%  Similarity=0.156  Sum_probs=56.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH------HHHHHHhcc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYS  142 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~~~~~~~  142 (238)
                      ++|.+|-.|++.| .+..+++.+ ..+.+|+.+|.+++.++.+.+.+.......++.++.+|..+      .+....++ 
T Consensus         2 ~GKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-   79 (254)
T d2gdza1           2 NGKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH-   79 (254)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHH-
Confidence            4677888886544 456666554 23689999999999888887777554334578888888653      22222222 


Q ss_pred             cCCCCeeEEEEcCC
Q 026461          143 ENEGSFDYAFVDAD  156 (238)
Q Consensus       143 ~~~~~fD~V~~d~~  156 (238)
                        .+++|+++.++.
T Consensus        80 --~G~iDilVnnAg   91 (254)
T d2gdza1          80 --FGRLDILVNNAG   91 (254)
T ss_dssp             --HSCCCEEEECCC
T ss_pred             --cCCcCeeccccc
Confidence              478999988754

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.15  E-value=0.7  Score=33.25  Aligned_cols=79  Identities=13%  Similarity=0.112  Sum_probs=49.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh--HHHHHHHhcccC
Q 026461           68 LVNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL--SVLDQLLKYSEN  144 (238)
Q Consensus        68 ~~~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~~l~~~~~~~~~  144 (238)
                      ....++||-.|++.| .+..++..+ ..+.+|+.++.+++..+...+.+....   ++.+...|..  +.+...      
T Consensus        20 ~l~gK~vlItGasgG-IG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~------   89 (191)
T d1luaa1          20 SVKGKKAVVLAGTGP-VGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADDASRAEA------   89 (191)
T ss_dssp             CCTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSHHHHHHH------
T ss_pred             CCCCCEEEEECCCHH-HHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhcc---chhhhhhhcccHHHHHHH------
Confidence            347789999995444 444444433 236899999999998888877776543   2233333332  233333      


Q ss_pred             CCCeeEEEEcCC
Q 026461          145 EGSFDYAFVDAD  156 (238)
Q Consensus       145 ~~~fD~V~~d~~  156 (238)
                      -+..|+|+..+.
T Consensus        90 ~~~iDilin~Ag  101 (191)
T d1luaa1          90 VKGAHFVFTAGA  101 (191)
T ss_dssp             TTTCSEEEECCC
T ss_pred             hcCcCeeeecCc
Confidence            378999987753

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=91.11  E-value=2.3  Score=31.99  Aligned_cols=81  Identities=11%  Similarity=0.090  Sum_probs=54.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH------HHHHHHhcc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYS  142 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~~~~~~~  142 (238)
                      +.+.+|-.|.+.| .+..+++.+. .+.+|+.+|.+++.++.+.+.+...+  .++.++.+|..+      .+.....+ 
T Consensus         7 ~GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~-   82 (259)
T d2ae2a_           7 EGCTALVTGGSRG-IGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANH-   82 (259)
T ss_dssp             TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHH-
Confidence            5788888886654 4555555442 25799999999999998888887765  467888888643      22222221 


Q ss_pred             cCCCCeeEEEEcC
Q 026461          143 ENEGSFDYAFVDA  155 (238)
Q Consensus       143 ~~~~~fD~V~~d~  155 (238)
                       -.++.|+++.++
T Consensus        83 -~~~~idilvnnA   94 (259)
T d2ae2a_          83 -FHGKLNILVNNA   94 (259)
T ss_dssp             -TTTCCCEEEECC
T ss_pred             -hCCCceEEEECC
Confidence             124799998764

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=90.98  E-value=0.051  Score=39.09  Aligned_cols=97  Identities=16%  Similarity=0.122  Sum_probs=61.1

Q ss_pred             CCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           71 AKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        71 ~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      ...||--|.  |.|..++.||+.+  +.+|+++.-+++..+.+++.    |.+. +  +..  .+...+... ....+.+
T Consensus        24 ~~~VLV~gaaGgVG~~avQlAk~~--Ga~Viat~~s~~k~~~~~~l----Gad~-v--i~~--~~~~~~~~~-~~~~~gv   91 (167)
T d1tt7a2          24 KGSVLVTGATGGVGGIAVSMLNKR--GYDVVASTGNREAADYLKQL----GASE-V--ISR--EDVYDGTLK-ALSKQQW   91 (167)
T ss_dssp             GCCEEEESTTSHHHHHHHHHHHHH--TCCEEEEESSSSTHHHHHHH----TCSE-E--EEH--HHHCSSCCC-SSCCCCE
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHc--CCceEEEecCHHHHHHHHhh----cccc-e--Eec--cchhchhhh-cccCCCc
Confidence            446887764  4566778888886  47999999999988877654    5432 2  221  111111000 0124679


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      |+|+-.-.    -..+....+.|+++|.+++-...
T Consensus        92 d~vid~vg----g~~~~~~~~~l~~~G~iv~~G~~  122 (167)
T d1tt7a2          92 QGAVDPVG----GKQLASLLSKIQYGGSVAVSGLT  122 (167)
T ss_dssp             EEEEESCC----THHHHHHHTTEEEEEEEEECCCS
T ss_pred             eEEEecCc----HHHHHHHHHHhccCceEEEeecc
Confidence            98875432    34567788999999999885444

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=90.91  E-value=0.69  Score=35.12  Aligned_cols=81  Identities=26%  Similarity=0.342  Sum_probs=55.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH------HHHHHHhc
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY  141 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~~~~~~  141 (238)
                      .+++.+|-.|.+.|. +..+++.+ ..+.+|+.+|.+++.++.+.+.+...+  .++..+.+|..+      .+....++
T Consensus         3 L~gK~alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (260)
T d1zema1           3 FNGKVCLVTGAGGNI-GLATALRLAEEGTAIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRD   79 (260)
T ss_dssp             TTTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            367888888865543 44444443 236799999999999999988887765  358888888643      22232222


Q ss_pred             ccCCCCeeEEEEcC
Q 026461          142 SENEGSFDYAFVDA  155 (238)
Q Consensus       142 ~~~~~~fD~V~~d~  155 (238)
                         .+..|+++.++
T Consensus        80 ---~g~iDilVnna   90 (260)
T d1zema1          80 ---FGKIDFLFNNA   90 (260)
T ss_dssp             ---HSCCCEEEECC
T ss_pred             ---hCCCCeehhhh
Confidence               47899998764

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.79  E-value=1.2  Score=33.38  Aligned_cols=80  Identities=16%  Similarity=0.132  Sum_probs=55.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH------HHHHHhcc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKYS  142 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~~~~  142 (238)
                      .++.+|-.|++.|. +..++..+ ..+.+|+.+|.+++.++...+.+...+  .++.++.+|..+.      +....++ 
T Consensus         6 ~Gkv~lITGas~GI-G~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~-   81 (244)
T d1yb1a_           6 TGEIVLITGAGHGI-GRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAE-   81 (244)
T ss_dssp             TTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHH-
Confidence            45677777876654 34444433 236899999999999998888887765  4688888887542      2222222 


Q ss_pred             cCCCCeeEEEEcC
Q 026461          143 ENEGSFDYAFVDA  155 (238)
Q Consensus       143 ~~~~~fD~V~~d~  155 (238)
                        .+..|+++.++
T Consensus        82 --~g~idilinna   92 (244)
T d1yb1a_          82 --IGDVSILVNNA   92 (244)
T ss_dssp             --TCCCSEEEECC
T ss_pred             --cCCCceeEeec
Confidence              57899998775

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=90.69  E-value=0.77  Score=34.69  Aligned_cols=76  Identities=20%  Similarity=0.135  Sum_probs=52.4

Q ss_pred             EEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH------HHHHHHhcccCCC
Q 026461           74 TIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYSENEG  146 (238)
Q Consensus        74 vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~~~~~~~~~~~  146 (238)
                      +|-.|++ +..+..+++.+. .+.+|+.+|.+++.++.+.+.+...+  .++.++.+|..+      .+....++   -+
T Consensus         4 alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~---~g   77 (255)
T d1gega_           4 ALVTGAG-QGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKT---LG   77 (255)
T ss_dssp             EEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH---TT
T ss_pred             EEEcCCc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHH---hC
Confidence            4556754 445566665542 36799999999999998888888766  368888888753      22233222   57


Q ss_pred             CeeEEEEcC
Q 026461          147 SFDYAFVDA  155 (238)
Q Consensus       147 ~fD~V~~d~  155 (238)
                      +.|+++.++
T Consensus        78 ~iDilVnnA   86 (255)
T d1gega_          78 GFDVIVNNA   86 (255)
T ss_dssp             CCCEEEECC
T ss_pred             CccEEEecc
Confidence            999998764

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=90.63  E-value=0.044  Score=38.74  Aligned_cols=92  Identities=11%  Similarity=-0.049  Sum_probs=54.4

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCc--EEEEecchhHHHHHHHhcccCCCCe
Q 026461           72 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHK--INFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~--v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      .+|+-||+|.  .+..++..+. .+..|+.++.+++..+...    ..+....  ......+..+   .       ...+
T Consensus         1 MkI~IiGaG~--iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~-------~~~~   64 (167)
T d1ks9a2           1 MKITVLGCGA--LGQLWLTALCKQGHEVQGWLRVPQPYCSVN----LVETDGSIFNESLTANDPD---F-------LATS   64 (167)
T ss_dssp             CEEEEECCSH--HHHHHHHHHHHTTCEEEEECSSCCSEEEEE----EECTTSCEEEEEEEESCHH---H-------HHTC
T ss_pred             CEEEEECcCH--HHHHHHHHHHHCCCceEEEEcCHHHhhhhc----cccCCccccccccccchhh---h-------hccc
Confidence            3688899854  3333333321 1468999998876332211    1111111  1122222222   2       2589


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      |+||+--........++.+.++++++..++.
T Consensus        65 D~iii~vka~~~~~~~~~l~~~~~~~~~Iv~   95 (167)
T d1ks9a2          65 DLLLVTLKAWQVSDAVKSLASTLPVTTPILL   95 (167)
T ss_dssp             SEEEECSCGGGHHHHHHHHHTTSCTTSCEEE
T ss_pred             ceEEEeecccchHHHHHhhccccCcccEEee
Confidence            9999988777888899999999998875554

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.52  E-value=0.68  Score=35.46  Aligned_cols=82  Identities=27%  Similarity=0.283  Sum_probs=57.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCC-CcEEEEecchhH------HHHHHHhc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALS------VLDQLLKY  141 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~------~l~~~~~~  141 (238)
                      +++++|-.|++.| .+..+++.+. .+.+|+.+|.+++.++.+.+.+...+.. .++.++.+|..+      .+....+.
T Consensus         3 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           3 SGKSVIITGSSNG-IGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            5678888887655 4555554442 3679999999999999999888887754 468899988643      22222222


Q ss_pred             ccCCCCeeEEEEcC
Q 026461          142 SENEGSFDYAFVDA  155 (238)
Q Consensus       142 ~~~~~~fD~V~~d~  155 (238)
                         .++.|+++.++
T Consensus        82 ---~G~iDilVnnA   92 (274)
T d1xhla_          82 ---FGKIDILVNNA   92 (274)
T ss_dssp             ---HSCCCEEEECC
T ss_pred             ---cCCceEEEeec
Confidence               37899999764

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.34  E-value=0.72  Score=35.02  Aligned_cols=82  Identities=23%  Similarity=0.198  Sum_probs=56.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCC-CcEEEEecchhH------HHHHHHhc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALS------VLDQLLKY  141 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~------~l~~~~~~  141 (238)
                      +.|.+|-.|++. ..+..+++.+ ..+.+|+.++.+++.++.+.+.+...+.. .++.++.+|..+      .+....++
T Consensus         4 ~gKvalVTGas~-GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (264)
T d1spxa_           4 AEKVAIITGSSN-GIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   82 (264)
T ss_dssp             TTCEEEETTTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            567777777654 4455555544 23689999999999999998888877654 468899888742      22222222


Q ss_pred             ccCCCCeeEEEEcC
Q 026461          142 SENEGSFDYAFVDA  155 (238)
Q Consensus       142 ~~~~~~fD~V~~d~  155 (238)
                         .++.|+++.++
T Consensus        83 ---~g~iDilvnnA   93 (264)
T d1spxa_          83 ---FGKLDILVNNA   93 (264)
T ss_dssp             ---HSCCCEEEECC
T ss_pred             ---hCCCCEeeccc
Confidence               47899998764

>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Hypothetical protein BH3024
species: Bacillus halodurans [TaxId: 86665]

Probab=90.33  E-value=1.5  Score=28.73  Aligned_cols=78  Identities=6%  Similarity=0.089  Sum_probs=53.0

Q ss_pred             CEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccch--HHHHHHHHhccCC
Q 026461           96 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY--CNYHERLMKLLKV  173 (238)
Q Consensus        96 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~--~~~~~~~~~~L~~  173 (238)
                      -+|..||-++...+..+..+...|+  .+. ...+..+.+..+..    ..+||+|++|...+..  .+.++.+...-+.
T Consensus         3 ~rILvVdDd~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~l~~----~~~~dliilD~~lp~~~G~el~~~ir~~~~~   75 (118)
T d2b4aa1           3 FRVTLVEDEPSHATLIQYHLNQLGA--EVT-VHPSGSAFFQHRSQ----LSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQ   75 (118)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHTGGG----GGSCSEEEEETTCTTSCHHHHHHHHTTSSSC
T ss_pred             CEEEEEECCHHHHHHHHHHHHhcCC--CeE-EECCHHHHHHHHHh----cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCC
Confidence            4799999999999999999999885  243 33456666655532    2579999999765443  4566666544333


Q ss_pred             CeEEEEe
Q 026461          174 GGIAVYD  180 (238)
Q Consensus       174 gG~lv~~  180 (238)
                      -.++++.
T Consensus        76 ~pii~lt   82 (118)
T d2b4aa1          76 PSVLILT   82 (118)
T ss_dssp             CEEEEEE
T ss_pred             CcEEEEE
Confidence            3566664

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.30  E-value=0.67  Score=35.43  Aligned_cols=83  Identities=25%  Similarity=0.302  Sum_probs=57.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCC-CcEEEEecchhH------HHHHHHh
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALS------VLDQLLK  140 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~------~l~~~~~  140 (238)
                      .++|.+|-.|++.| .+..+++.+. .+.+|+.++.+++.++.+.+.+.+.+.. .++.++.+|..+      .+....+
T Consensus         3 L~gK~alVTGas~G-IG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   81 (272)
T d1xkqa_           3 FSNKTVIITGSSNG-IGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK   81 (272)
T ss_dssp             TTTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            35678888886544 4555555442 2579999999999999999988887654 468889888653      2222222


Q ss_pred             cccCCCCeeEEEEcC
Q 026461          141 YSENEGSFDYAFVDA  155 (238)
Q Consensus       141 ~~~~~~~fD~V~~d~  155 (238)
                      +   .+..|+++.++
T Consensus        82 ~---~g~iDilvnnA   93 (272)
T d1xkqa_          82 Q---FGKIDVLVNNA   93 (272)
T ss_dssp             H---HSCCCEEEECC
T ss_pred             H---hCCceEEEeCC
Confidence            2   47899999764

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.15  E-value=1  Score=34.04  Aligned_cols=80  Identities=18%  Similarity=0.118  Sum_probs=55.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH------HHHHHHhcc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYS  142 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~~~~~~~  142 (238)
                      +++.+|-.|.+ +..+..+++.+ ..+.+|+.++.+++.++.+.+.+...+  .++.++.+|..+      .+....++ 
T Consensus        10 ~gK~alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~-   85 (255)
T d1fmca_          10 DGKCAIITGAG-AGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISK-   85 (255)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHH-
Confidence            56777777754 44556566554 236899999999999999888888766  458888888753      22222222 


Q ss_pred             cCCCCeeEEEEcC
Q 026461          143 ENEGSFDYAFVDA  155 (238)
Q Consensus       143 ~~~~~fD~V~~d~  155 (238)
                        -++.|+++..+
T Consensus        86 --~g~iDilvnnA   96 (255)
T d1fmca_          86 --LGKVDILVNNA   96 (255)
T ss_dssp             --HSSCCEEEECC
T ss_pred             --cCCCCEeeeCC
Confidence              37899998764

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.09  E-value=2.1  Score=32.09  Aligned_cols=80  Identities=14%  Similarity=0.091  Sum_probs=52.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHH-HcCCCCcEEEEecchhH------HHHHHHhc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIK-KAGVDHKINFIESEALS------VLDQLLKY  141 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~------~l~~~~~~  141 (238)
                      +.+.+|-.|++.| .+..+++.+ ..+.+|+.+|.+++..+.+.+.+. ..+  .++.++.+|..+      .+....++
T Consensus         4 ~gK~~lITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (251)
T d1vl8a_           4 RGRVALVTGGSRG-LGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAVKEK   80 (251)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            5688888887655 445555443 236899999999988776665553 434  357888888653      22222222


Q ss_pred             ccCCCCeeEEEEcC
Q 026461          142 SENEGSFDYAFVDA  155 (238)
Q Consensus       142 ~~~~~~fD~V~~d~  155 (238)
                         .+++|+++.++
T Consensus        81 ---~g~iDiLVnnA   91 (251)
T d1vl8a_          81 ---FGKLDTVVNAA   91 (251)
T ss_dssp             ---HSCCCEEEECC
T ss_pred             ---cCCCCEEEECC
Confidence               47899999764

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.24  E-value=2.8  Score=31.62  Aligned_cols=81  Identities=17%  Similarity=0.197  Sum_probs=52.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCC-chhHHHHHHHHHHcCCCCcEEEEecchhH------HHHHHHh
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVN-RETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLK  140 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~~~~~  140 (238)
                      .++|.+|-.|++.| .+..+++.+. .+.+|+.++.+ ++.++.+.+.+...+.  ++.++.+|..+      .+....+
T Consensus        16 L~gK~~lITGas~G-IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~   92 (272)
T d1g0oa_          16 LEGKVALVTGAGRG-IGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS--DAACVKANVGVVEDIVRMFEEAVK   92 (272)
T ss_dssp             CTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCC--ceeeEeCCCCCHHHHHHHHHHHHH
Confidence            46688888887555 4555555442 25789999886 4566777777777663  57888888653      2222222


Q ss_pred             cccCCCCeeEEEEcC
Q 026461          141 YSENEGSFDYAFVDA  155 (238)
Q Consensus       141 ~~~~~~~fD~V~~d~  155 (238)
                      .   .+..|+++...
T Consensus        93 ~---~g~idilV~na  104 (272)
T d1g0oa_          93 I---FGKLDIVCSNS  104 (272)
T ss_dssp             H---HSCCCEEEECC
T ss_pred             H---hCCCCcccccc
Confidence            2   47899998764

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=88.96  E-value=2.6  Score=31.36  Aligned_cols=80  Identities=11%  Similarity=0.121  Sum_probs=48.8

Q ss_pred             CCCEEEEEccccc-HHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH------HHHHHHhc
Q 026461           70 NAKKTIEIGVFTG-YSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY  141 (238)
Q Consensus        70 ~~~~vLeiG~G~G-~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~~~~~~  141 (238)
                      +.|++|-.|++++ ..+..+++.+ ..+.+|+..+.++...+.+.+.....+   +..++.+|..+      .+....+.
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~   83 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALG---GALLFRADVTQDEELDALFAGVKEA   83 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT---CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccC---cccccccccCCHHHHHHHHHHHHHh
Confidence            5788999996431 2333333332 126789999999888777776665544   35667777643      22222222


Q ss_pred             ccCCCCeeEEEEcC
Q 026461          142 SENEGSFDYAFVDA  155 (238)
Q Consensus       142 ~~~~~~fD~V~~d~  155 (238)
                         .++.|+++..+
T Consensus        84 ---~g~iDilVnna   94 (256)
T d1ulua_          84 ---FGGLDYLVHAI   94 (256)
T ss_dssp             ---HSSEEEEEECC
T ss_pred             ---cCCceEEEecc
Confidence               47899888654

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=88.70  E-value=2.1  Score=32.15  Aligned_cols=79  Identities=16%  Similarity=0.135  Sum_probs=54.1

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH------HHHHHHhccc
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYSE  143 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~~~~~~~~  143 (238)
                      +|.+|--|++ +..+..+++.+. .+.+|+.++.+++.++.+.+.+...+.  ++.++.+|..+      .+....++  
T Consensus         2 gKValITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~--   76 (257)
T d2rhca1           2 SEVALVTGAT-SGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVER--   76 (257)
T ss_dssp             CCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHH--
T ss_pred             CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHHH--
Confidence            3555666754 444566665542 367999999999999998888887663  58888888643      22233222  


Q ss_pred             CCCCeeEEEEcC
Q 026461          144 NEGSFDYAFVDA  155 (238)
Q Consensus       144 ~~~~fD~V~~d~  155 (238)
                       .++.|+++.++
T Consensus        77 -~g~iDilVnnA   87 (257)
T d2rhca1          77 -YGPVDVLVNNA   87 (257)
T ss_dssp             -TCSCSEEEECC
T ss_pred             -hCCCCEEEecc
Confidence             57899999764

>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator Sin1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.69  E-value=1.8  Score=28.88  Aligned_cols=83  Identities=12%  Similarity=0.234  Sum_probs=51.8

Q ss_pred             CEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccch--HHHHHHHHhccCC
Q 026461           96 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY--CNYHERLMKLLKV  173 (238)
Q Consensus        96 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~--~~~~~~~~~~L~~  173 (238)
                      .+|..+|-++...+..+..+...|+.. +.. ..|+.+.+..+...-....+||+|++|...+..  .+..+.+.+...+
T Consensus         2 irVLvVDD~~~~~~~l~~~L~~~g~~~-v~~-a~~g~eAl~~l~~~~~~~~~~dlillD~~mP~~dG~el~~~ir~~~~~   79 (128)
T d2r25b1           2 VKILVVEDNHVNQEVIKRMLNLEGIEN-IEL-ACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGY   79 (128)
T ss_dssp             SCEEEECSCHHHHHHHHHHHHHTTCCC-EEE-ESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCC
T ss_pred             eEEEEEeCCHHHHHHHHHHHHHcCCeE-EEE-EcChHHHHHHHHhhhhccCCCCEEEEEeCCCCCCHHHHHHHHHHccCC
Confidence            378899999999999999999988642 543 346555444332100115799999999755443  3455666543333


Q ss_pred             Ce-EEEEe
Q 026461          174 GG-IAVYD  180 (238)
Q Consensus       174 gG-~lv~~  180 (238)
                      .- +|++.
T Consensus        80 ~~piI~lT   87 (128)
T d2r25b1          80 TSPIVALT   87 (128)
T ss_dssp             CSCEEEEE
T ss_pred             CCeEEEEE
Confidence            33 44443

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=88.55  E-value=2.5  Score=31.62  Aligned_cols=78  Identities=17%  Similarity=0.221  Sum_probs=50.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH------HHHHHHhc
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY  141 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~~~~~~  141 (238)
                      .+.|.+|-.|.+.| .+..+++.+. .+.+|+.+|.+++.++.+.+.+   +  .+..++.+|..+      ......++
T Consensus         4 L~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~~~~~~~~~~~~   77 (253)
T d1hxha_           4 LQGKVALVTGGASG-VGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---G--ERSMFVRHDVSSEADWTLVMAAVQRR   77 (253)
T ss_dssp             TTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---C--TTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C--CCeEEEEeecCCHHHHHHHHHHHHHH
Confidence            35678887786544 5555555442 2679999999998877766554   2  457777777643      22222222


Q ss_pred             ccCCCCeeEEEEcC
Q 026461          142 SENEGSFDYAFVDA  155 (238)
Q Consensus       142 ~~~~~~fD~V~~d~  155 (238)
                         .+..|+++.++
T Consensus        78 ---~g~iDilVnnA   88 (253)
T d1hxha_          78 ---LGTLNVLVNNA   88 (253)
T ss_dssp             ---HCSCCEEEECC
T ss_pred             ---hCCCCeEEecc
Confidence               47899999875

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=88.53  E-value=0.8  Score=35.14  Aligned_cols=113  Identities=12%  Similarity=0.214  Sum_probs=70.0

Q ss_pred             hHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHH
Q 026461           57 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD  136 (238)
Q Consensus        57 ~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~  136 (238)
                      .....+..+...+... -+..  +.|.-.+ .+..++++-+.+.+|..|+-.+..++++..   ..++.+...|..+.+.
T Consensus        70 ~~~~yl~~v~~~n~~~-~l~~--YPGSP~i-a~~llR~~Drl~l~ELHp~e~~~L~~~~~~---~~~~~v~~~DG~~~l~  142 (271)
T d2oo3a1          70 LFLEYISVIKQINLNS-TLSY--YPGSPYF-AINQLRSQDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLN  142 (271)
T ss_dssp             GGHHHHHHHHHHSSSS-SCCE--EECHHHH-HHHHSCTTSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHH
T ss_pred             hHHHHHHHHHHhCCCC-CcCc--CCCCHHH-HHHhCCCCCceEEeecCHHHHHHHHHHhcc---CCCceEEcCchHHHHH
Confidence            3444554444443322 1233  4444333 333345578999999999988888776532   3679999999999877


Q ss_pred             HHHhcccCCCCeeEEEEcCC---ccchHHHHHHHHhccC--CCeEEEE
Q 026461          137 QLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLK--VGGIAVY  179 (238)
Q Consensus       137 ~~~~~~~~~~~fD~V~~d~~---~~~~~~~~~~~~~~L~--~gG~lv~  179 (238)
                      .+.   ++.+.--+|+||.+   +..|....+.+...++  +.|++++
T Consensus       143 all---PP~~rRgLVLIDPpYE~k~ey~~v~~~l~~a~kr~~~g~~~i  187 (271)
T d2oo3a1         143 ALL---PPPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCV  187 (271)
T ss_dssp             HHC---SCTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             hhC---CCCCCceEEEecCCcCCHHHHHHHHHHHHHHHHhCCCceEEE
Confidence            653   33567779999975   3445555555544443  5676665

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.38  E-value=1.2  Score=34.66  Aligned_cols=81  Identities=15%  Similarity=0.143  Sum_probs=50.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCc----hhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhccc
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNR----ETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE  143 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~----~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~  143 (238)
                      .++++||-.| |+|..+.++++.+- .+.+|+++|...    ..++..+........ .+++++.+|..+.......   
T Consensus        14 ~~~k~iLVTG-~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~d~~~~~~~---   88 (341)
T d1sb8a_          14 AQPKVWLITG-VAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQW-SNFKFIQGDIRNLDDCNNA---   88 (341)
T ss_dssp             HSCCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHH-TTEEEEECCTTSHHHHHHH---
T ss_pred             CCCCEEEEec-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhccc-CCeeEEeeccccccccccc---
Confidence            4778899888 79999999888762 256899999522    222333322211111 4589999998775432221   


Q ss_pred             CCCCeeEEEEcC
Q 026461          144 NEGSFDYAFVDA  155 (238)
Q Consensus       144 ~~~~fD~V~~d~  155 (238)
                       ....|.|+..+
T Consensus        89 -~~~~~~v~~~~   99 (341)
T d1sb8a_          89 -CAGVDYVLHQA   99 (341)
T ss_dssp             -HTTCSEEEECC
T ss_pred             -ccccccccccc
Confidence             25666666544

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=88.36  E-value=1.2  Score=34.26  Aligned_cols=76  Identities=16%  Similarity=0.115  Sum_probs=47.1

Q ss_pred             EEEEEcccccHHHHHHHhhC-CCCCEEEEEe-CCchhHHHHHHHHHHcCCCCcEEEEecchhH--HHHHHHhcccCCCCe
Q 026461           73 KTIEIGVFTGYSLLLTALTI-PEDGQITAID-VNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF  148 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD-~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~l~~~~~~~~~~~~f  148 (238)
                      +||-.| |+|..+.++.+.+ ..+.+|+++| ++..........+..   ..+++++.+|..+  .+....+    ..++
T Consensus         2 KILVTG-atGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~---~~~~~~i~~Di~~~~~l~~~~~----~~~~   73 (338)
T d1orra_           2 KLLITG-GCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSS---LGNFEFVHGDIRNKNDVTRLIT----KYMP   73 (338)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHT---TCCCEEEECCTTCHHHHHHHHH----HHCC
T ss_pred             EEEEEC-CCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhc---cCCcEEEEcccCCHHHHHHHHH----hcCC
Confidence            688666 6899998887766 2367999998 333322222222222   2468999999864  3333322    2468


Q ss_pred             eEEEEcCC
Q 026461          149 DYAFVDAD  156 (238)
Q Consensus       149 D~V~~d~~  156 (238)
                      |.||.-+.
T Consensus        74 d~Vih~aa   81 (338)
T d1orra_          74 DSCFHLAG   81 (338)
T ss_dssp             SEEEECCC
T ss_pred             ceEEeecc
Confidence            99987653

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=88.29  E-value=2.8  Score=31.15  Aligned_cols=77  Identities=13%  Similarity=0.064  Sum_probs=50.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH------HHHHHHhcc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYS  142 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~~~~~~~  142 (238)
                      +++.+|-.|.+.| .+..+++.+. .+.+|+.++.+++.++...+.+.     .+...+.+|..+      .+....++ 
T Consensus         3 ~gK~alITGas~G-IG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~-   75 (243)
T d1q7ba_           3 EGKIALVTGASRG-IGRAIAETLAARGAKVIGTATSENGAQAISDYLG-----ANGKGLMLNVTDPASIESVLEKIRAE-   75 (243)
T ss_dssp             TTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecCHHHhhhhhhhhhcc-
Confidence            5677777786544 4555555442 35799999999988877766552     356777778643      22333222 


Q ss_pred             cCCCCeeEEEEcC
Q 026461          143 ENEGSFDYAFVDA  155 (238)
Q Consensus       143 ~~~~~fD~V~~d~  155 (238)
                        .++.|+++..+
T Consensus        76 --~g~iDilVnnA   86 (243)
T d1q7ba_          76 --FGEVDILVNNA   86 (243)
T ss_dssp             --TCSCSEEEECC
T ss_pred             --cCCcceehhhh
Confidence              57999998764

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=88.09  E-value=1.6  Score=32.47  Aligned_cols=78  Identities=14%  Similarity=0.086  Sum_probs=50.2

Q ss_pred             CEE-EEEcccccHHHHHHHhhCCC-CC-------EEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH------HHH
Q 026461           72 KKT-IEIGVFTGYSLLLTALTIPE-DG-------QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLD  136 (238)
Q Consensus        72 ~~v-LeiG~G~G~~t~~la~~~~~-~~-------~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~  136 (238)
                      |+| |-.|++.| .+..++..+.. +.       .|+.++.+++.++.+.+.+...|  .++.++.+|..+      .+.
T Consensus         1 K~VvlITGas~G-IG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~   77 (240)
T d2bd0a1           1 KHILLITGAGKG-IGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG--ALTDTITADISDMADVRRLTT   77 (240)
T ss_dssp             CEEEEEETTTSH-HHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT--CEEEEEECCTTSHHHHHHHHH
T ss_pred             CCEEEEccCCCH-HHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHH
Confidence            344 55576554 45555544421 22       38999999999988888887765  467888888753      222


Q ss_pred             HHHhcccCCCCeeEEEEcC
Q 026461          137 QLLKYSENEGSFDYAFVDA  155 (238)
Q Consensus       137 ~~~~~~~~~~~fD~V~~d~  155 (238)
                      ...++   .+..|+++.++
T Consensus        78 ~~~~~---~g~iDilvnnA   93 (240)
T d2bd0a1          78 HIVER---YGHIDCLVNNA   93 (240)
T ss_dssp             HHHHH---TSCCSEEEECC
T ss_pred             HHHHH---cCCcceeeccc
Confidence            33222   57899998765

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=87.98  E-value=0.96  Score=29.81  Aligned_cols=52  Identities=15%  Similarity=0.089  Sum_probs=38.8

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeC--------CchhHHHHHHHHHHcCC
Q 026461           67 RLVNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDV--------NRETYEIGLPIIKKAGV  120 (238)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~--------~~~~~~~a~~~~~~~~~  120 (238)
                      ....|++|+-||.  |+.++.+|..+. .+.+|+.++.        +++..+.+++.+++.|+
T Consensus        18 ~l~~p~~v~IiGg--G~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV   78 (117)
T d1onfa2          18 NIKESKKIGIVGS--GYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNI   78 (117)
T ss_dssp             TCCCCSEEEEECC--SHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTC
T ss_pred             ccCCCCEEEEECC--chHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHHhCCC
Confidence            4557899999998  677777776653 2579999996        44567788888887764

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=87.89  E-value=3.9  Score=30.19  Aligned_cols=78  Identities=13%  Similarity=0.075  Sum_probs=47.7

Q ss_pred             cCCCEEEEEcccc--c--H-HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH------HHHH
Q 026461           69 VNAKKTIEIGVFT--G--Y-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQ  137 (238)
Q Consensus        69 ~~~~~vLeiG~G~--G--~-~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~~  137 (238)
                      ...|++|-.|+++  |  . .+..|++   .+.+|+.++.+++..+.+.+.....+.   ......|..+      ....
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~---~G~~V~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~   76 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHR---EGAELAFTYQNDKLKGRVEEFAAQLGS---DIVLQCDVAEDASIDTMFAE   76 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHH---TTCEEEEEESSTTTHHHHHHHHHHTTC---CCEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHHHHhhcCC---cceeecccchHHHHHHHHHH
Confidence            4678899988755  4  2 3334444   267999999998888888777766553   2333333321      2222


Q ss_pred             HHhcccCCCCeeEEEEcC
Q 026461          138 LLKYSENEGSFDYAFVDA  155 (238)
Q Consensus       138 ~~~~~~~~~~fD~V~~d~  155 (238)
                      ..   ...+..|.++..+
T Consensus        77 ~~---~~~~~~d~~v~~a   91 (258)
T d1qsga_          77 LG---KVWPKFDGFVHSI   91 (258)
T ss_dssp             HH---TTCSSEEEEEECC
T ss_pred             hh---hcccccceEEEee
Confidence            22   2367889888653

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=87.75  E-value=0.49  Score=33.92  Aligned_cols=93  Identities=13%  Similarity=0.153  Sum_probs=59.4

Q ss_pred             CCEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           71 AKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        71 ~~~vLeiG~G--~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      ...||-.|..  .|..++.+++.+  +.+|+++.-+++..+.+++.    |..   .++.-+..+....+     ....+
T Consensus        32 ~~~vlV~gasGGVG~~aiQlAk~~--Ga~Via~~~~~~k~~~~~~l----Gad---~vi~~~~~~~~~~l-----~~~~~   97 (177)
T d1o89a2          32 DGEIVVTGASGGVGSTAVALLHKL--GYQVVAVSGRESTHEYLKSL----GAS---RVLPRDEFAESRPL-----EKQVW   97 (177)
T ss_dssp             GCEEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHHH----TEE---EEEEGGGSSSCCSS-----CCCCE
T ss_pred             CCcEEEEEccccchHHHHHHHHHc--CCCeEEEecchhHHHHHHhh----ccc---cccccccHHHHHHH-----HhhcC
Confidence            3477766533  556778888886  58999999999988777653    432   23332221121111     13567


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      |.|+ |..-   ...+....+.|+++|.++.-.
T Consensus        98 ~~vv-D~Vg---g~~~~~~l~~l~~~Griv~~G  126 (177)
T d1o89a2          98 AGAI-DTVG---DKVLAKVLAQMNYGGCVAACG  126 (177)
T ss_dssp             EEEE-ESSC---HHHHHHHHHTEEEEEEEEECC
T ss_pred             CeeE-EEcc---hHHHHHHHHHhccccceEeec
Confidence            8764 5432   356788899999999998743

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=87.65  E-value=0.73  Score=36.05  Aligned_cols=77  Identities=18%  Similarity=0.307  Sum_probs=46.3

Q ss_pred             EEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhcccCCCCee
Q 026461           73 KTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSFD  149 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~~~~~~~fD  149 (238)
                      +||-+| |+|..+.+++..+ ..+.+|+++|................. ..+++++++|..+.  +.....    ..++|
T Consensus         2 KiLItG-~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~~~----~~~~d   75 (338)
T d1udca_           2 RVLVTG-GSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALMTEILH----DHAID   75 (338)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH-TSCCEEEECCTTCHHHHHHHHH----HTTCS
T ss_pred             EEEEEC-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhc-CCCCEEEEeecCCHHHHHHHHh----ccCCC
Confidence            578888 7999999988876 235689999853222111111111111 14689999997653  322221    25789


Q ss_pred             EEEEcC
Q 026461          150 YAFVDA  155 (238)
Q Consensus       150 ~V~~d~  155 (238)
                      +||--+
T Consensus        76 ~ViHlA   81 (338)
T d1udca_          76 TVIHFA   81 (338)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            998654

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=87.64  E-value=2.2  Score=32.11  Aligned_cols=81  Identities=12%  Similarity=0.135  Sum_probs=54.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH------HHHHHhcc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKYS  142 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~~~~  142 (238)
                      +.|++|-.|+..| .+..+++.+ ..+.+|+.++.+++.++.+.+.+...+  ..+.++.+|..+.      +....+. 
T Consensus         5 ~gK~alITGas~G-IG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~--~~~~~~~~D~s~~~~~~~~~~~~~~~-   80 (258)
T d1ae1a_           5 KGTTALVTGGSKG-IGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHV-   80 (258)
T ss_dssp             TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeecCCHHHHHHHHHHHHHH-
Confidence            6788999997644 445555443 236899999999999988888888766  3577888886532      2222222 


Q ss_pred             cCCCCeeEEEEcC
Q 026461          143 ENEGSFDYAFVDA  155 (238)
Q Consensus       143 ~~~~~fD~V~~d~  155 (238)
                       ..+..|+++..+
T Consensus        81 -~~g~idilinna   92 (258)
T d1ae1a_          81 -FDGKLNILVNNA   92 (258)
T ss_dssp             -TTSCCCEEEECC
T ss_pred             -hCCCcEEEeccc
Confidence             135788888654

>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0F
species: Bacillus subtilis [TaxId: 1423]

Probab=87.50  E-value=2.5  Score=27.56  Aligned_cols=76  Identities=13%  Similarity=0.159  Sum_probs=52.3

Q ss_pred             CEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccch--HHHHHHHHhccCC
Q 026461           96 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY--CNYHERLMKLLKV  173 (238)
Q Consensus        96 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~--~~~~~~~~~~L~~  173 (238)
                      .+|..+|-++......++.+...|+.  +. ...++.+.+..+.     ...||+|++|...+..  .++++.+... .+
T Consensus         2 krILvVDD~~~~~~~l~~~L~~~g~~--v~-~a~~g~eal~~~~-----~~~~dlillD~~mP~~~G~el~~~lr~~-~~   72 (119)
T d1peya_           2 EKILIVDDQSGIRILLNEVFNKEGYQ--TF-QAANGLQALDIVT-----KERPDLVLLDMKIPGMDGIEILKRMKVI-DE   72 (119)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCE--EE-EESSHHHHHHHHH-----HHCCSEEEEESCCTTCCHHHHHHHHHHH-CT
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCCE--EE-EeCCHHHHHHHHH-----hCCCCEEEEeccCCCCCHHHHHHHHHHh-CC
Confidence            48999999999999999999988862  33 4556767666554     3589999999754443  4566666433 34


Q ss_pred             C-eEEEEe
Q 026461          174 G-GIAVYD  180 (238)
Q Consensus       174 g-G~lv~~  180 (238)
                      + -++++.
T Consensus        73 ~~pvi~lt   80 (119)
T d1peya_          73 NIRVIIMT   80 (119)
T ss_dssp             TCEEEEEE
T ss_pred             CCcEEEEe
Confidence            3 355554

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=87.38  E-value=0.38  Score=34.82  Aligned_cols=38  Identities=18%  Similarity=0.202  Sum_probs=29.5

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHH
Q 026461           73 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGL  112 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~  112 (238)
                      +|.-||.  |+.++.+|..+..+.+|+|+|++++.++..+
T Consensus         2 kI~ViGl--G~vGl~~a~~~a~g~~V~g~Din~~~v~~l~   39 (196)
T d1dlja2           2 KIAVAGS--GYVGLSLGVLLSLQNEVTIVDILPSKVDKIN   39 (196)
T ss_dssp             EEEEECC--SHHHHHHHHHHTTTSEEEEECSCHHHHHHHH
T ss_pred             EEEEECC--ChhHHHHHHHHHCCCcEEEEECCHHHHHHHh
Confidence            5667765  7777777766655789999999999887665

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.33  E-value=0.23  Score=35.75  Aligned_cols=34  Identities=15%  Similarity=0.175  Sum_probs=27.6

Q ss_pred             CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461          146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ...|+|++.-+.....+.++.+.+.++++-++++
T Consensus        70 ~~ad~Ii~avps~~~~~~~~~l~~~l~~~~ii~~  103 (180)
T d1txga2          70 ENAEVVLLGVSTDGVLPVMSRILPYLKDQYIVLI  103 (180)
T ss_dssp             TTCSEEEECSCGGGHHHHHHHHTTTCCSCEEEEC
T ss_pred             hccchhhcccchhhhHHHHHhhccccccceeccc
Confidence            5789999988888889999999999988655554

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=87.12  E-value=2.7  Score=27.40  Aligned_cols=77  Identities=17%  Similarity=0.139  Sum_probs=52.4

Q ss_pred             CEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccch--HHHHHHHHhccCC
Q 026461           96 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY--CNYHERLMKLLKV  173 (238)
Q Consensus        96 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~--~~~~~~~~~~L~~  173 (238)
                      .+|.-+|-++...+..+..+...|+  .+.....+..+.+..+.     ...||+|++|...+..  .+.++.+.+. .+
T Consensus         2 krILivDD~~~~~~~l~~~L~~~g~--~v~~~a~~~~~al~~~~-----~~~~dliilD~~mp~~~G~e~~~~ir~~-~~   73 (118)
T d1u0sy_           2 KRVLIVDDAAFMRMMLKDIITKAGY--EVAGEATNGREAVEKYK-----ELKPDIVTMDITMPEMNGIDAIKEIMKI-DP   73 (118)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH-----HHCCSEEEEECSCGGGCHHHHHHHHHHH-CT
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCC--ceEEEECCHHHHHHHHH-----hccCCEEEEecCCCCCCHHHHHHHHHHh-CC
Confidence            4789999999999999999998875  24334567777776664     3589999999755443  4555555433 33


Q ss_pred             Ce-EEEEe
Q 026461          174 GG-IAVYD  180 (238)
Q Consensus       174 gG-~lv~~  180 (238)
                      .- ++++.
T Consensus        74 ~~pvi~ls   81 (118)
T d1u0sy_          74 NAKIIVCS   81 (118)
T ss_dssp             TCCEEEEE
T ss_pred             CCcEEEEE
Confidence            33 55554

>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: Receiver domain of the ethylene receptor
domain: Receiver domain of the ethylene receptor
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.85  E-value=1.7  Score=29.23  Aligned_cols=65  Identities=12%  Similarity=0.130  Sum_probs=48.1

Q ss_pred             CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccch--HHHHHHHH
Q 026461           95 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY--CNYHERLM  168 (238)
Q Consensus        95 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~--~~~~~~~~  168 (238)
                      +.+|..+|-++......++.+...|+  .+. ...++.+.+..+      ...||+|++|...+..  .+..+.+.
T Consensus         7 g~rILvVDD~~~~~~~l~~~L~~~G~--~v~-~a~~g~eal~~l------~~~~dlillD~~mP~~dG~el~~~ir   73 (134)
T d1dcfa_           7 GLKVLVMDENGVSRMVTKGLLVHLGC--EVT-TVSSNEECLRVV------SHEHKVVFMDVCMPGVENYQIALRIH   73 (134)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHC------CTTCSEEEEECCSSTTTTTHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHh------hcCCCeEEEEeccCCCchHHHHHHHH
Confidence            57999999999999999999999886  343 456777777655      4689999999765443  34445554

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=86.71  E-value=1.6  Score=29.76  Aligned_cols=38  Identities=18%  Similarity=0.028  Sum_probs=28.4

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHH
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYE  109 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~  109 (238)
                      -++|.=|| |.|..+.+|+..+.. +..|++.|.++....
T Consensus         9 ~~kI~iIG-g~G~mG~~la~~L~~~G~~V~~~d~~~~~~~   47 (152)
T d2pv7a2           9 IHKIVIVG-GYGKLGGLFARYLRASGYPISILDREDWAVA   47 (152)
T ss_dssp             CCCEEEET-TTSHHHHHHHHHHHTTTCCEEEECTTCGGGH
T ss_pred             CCeEEEEc-CCCHHHHHHHHHHHHcCCCcEeccccccccc
Confidence            35899999 568888888887743 468999999876443

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=86.67  E-value=2.2  Score=32.17  Aligned_cols=80  Identities=18%  Similarity=0.186  Sum_probs=53.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH------HHHHHHhc
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY  141 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~~~~~~  141 (238)
                      .+.|.+|-.|++.| .+..+++.+ ..+.+|+.+|.+++.++.+.+.+..   ..++.++.+|..+      .+....++
T Consensus         4 L~gKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (268)
T d2bgka1           4 LQDKVAIITGGAGG-IGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTIAK   79 (268)
T ss_dssp             TTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC---CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            36788888896655 455555554 2367999999999888777766643   3468888888653      22222222


Q ss_pred             ccCCCCeeEEEEcC
Q 026461          142 SENEGSFDYAFVDA  155 (238)
Q Consensus       142 ~~~~~~fD~V~~d~  155 (238)
                         .+..|+++..+
T Consensus        80 ---~g~iD~lVnnA   90 (268)
T d2bgka1          80 ---HGKLDIMFGNV   90 (268)
T ss_dssp             ---HSCCCEEEECC
T ss_pred             ---cCCcceecccc
Confidence               47899999764

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=86.41  E-value=0.69  Score=36.22  Aligned_cols=80  Identities=15%  Similarity=0.092  Sum_probs=51.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhcccCC
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENE  145 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~~~~~  145 (238)
                      .++++||-.| |+|..+.++++.+- .+.+|++++..+......   +......++++++.+|..+.  +.....    .
T Consensus         6 ~~~KkILVTG-~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~---~~~~~~~~~i~~~~~Dl~d~~~l~~~~~----~   77 (356)
T d1rkxa_           6 WQGKRVFVTG-HTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSL---FETARVADGMQSEIGDIRDQNKLLESIR----E   77 (356)
T ss_dssp             HTTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCH---HHHTTTTTTSEEEECCTTCHHHHHHHHH----H
T ss_pred             hCCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCCCccHHH---HhhhhcccCCeEEEeeccChHhhhhhhh----h
Confidence            4679999998 57998888877662 256899999876543322   22223346799999997642  223221    2


Q ss_pred             CCeeEEEEcCC
Q 026461          146 GSFDYAFVDAD  156 (238)
Q Consensus       146 ~~fD~V~~d~~  156 (238)
                      ..+|+|+..+.
T Consensus        78 ~~~~~v~~~aa   88 (356)
T d1rkxa_          78 FQPEIVFHMAA   88 (356)
T ss_dssp             HCCSEEEECCS
T ss_pred             chhhhhhhhhc
Confidence            46788876543

>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.17  E-value=3.1  Score=27.19  Aligned_cols=77  Identities=9%  Similarity=0.060  Sum_probs=52.4

Q ss_pred             CEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccch--HHHHHHHHhccCC
Q 026461           96 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY--CNYHERLMKLLKV  173 (238)
Q Consensus        96 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~--~~~~~~~~~~L~~  173 (238)
                      -+|..||-++...+..+..+...|+  .+. ...++.+.+..+.     ..+||+|++|...+..  ..+++.+...-..
T Consensus         2 irILiVdDd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~l~-----~~~~dlillD~~mp~~~g~~~~~~lr~~~~~   73 (122)
T d1kgsa2           2 VRVLVVEDERDLADLITEALKKEMF--TVD-VCYDGEEGMYMAL-----NEPFDVVILDIMLPVHDGWEILKSMRESGVN   73 (122)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEEESCCSSSCHHHHHHHHHHTTCC
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHCCC--EEE-EEcchHHHHHHHH-----hhCccccccccccccchhHHHHHHHHhcCCC
Confidence            4789999999999999999999886  244 4567777666654     3699999999754433  4455555433222


Q ss_pred             CeEEEEe
Q 026461          174 GGIAVYD  180 (238)
Q Consensus       174 gG~lv~~  180 (238)
                      --++++.
T Consensus        74 ~piI~lt   80 (122)
T d1kgsa2          74 TPVLMLT   80 (122)
T ss_dssp             CCEEEEE
T ss_pred             CcEEEEc
Confidence            2355554

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=86.14  E-value=5.2  Score=29.75  Aligned_cols=80  Identities=14%  Similarity=0.147  Sum_probs=52.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEE-eCCchhHHHHHHHHHHcCCCCcEEEEecchhH------HHHHHHhc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAI-DVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY  141 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~i-D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~~~~~~  141 (238)
                      .+|.+|-.| |++..+..++..+. .+.+|+.. ..+++..+.+.+.+...|.  ++.++.+|..+      .+.....+
T Consensus         5 ~GK~alITG-as~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~~   81 (259)
T d1ja9a_           5 AGKVALTTG-AGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA--QGVAIQADISKPSEVVALFDKAVSH   81 (259)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeC-CCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCC--CceEecCCCCCHHHHHHHHHHHHHH
Confidence            567788777 45666666665552 24677764 5677778888888888773  57888888753      23333222


Q ss_pred             ccCCCCeeEEEEcC
Q 026461          142 SENEGSFDYAFVDA  155 (238)
Q Consensus       142 ~~~~~~fD~V~~d~  155 (238)
                         .+..|+++..+
T Consensus        82 ---~g~idilinna   92 (259)
T d1ja9a_          82 ---FGGLDFVMSNS   92 (259)
T ss_dssp             ---HSCEEEEECCC
T ss_pred             ---cCCCcEEEecc
Confidence               47899998764

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.12  E-value=2.5  Score=31.75  Aligned_cols=81  Identities=15%  Similarity=0.073  Sum_probs=54.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH------HHHHHHhcc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYS  142 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~~~~~~~  142 (238)
                      +.+++|-.|++.|. +..+++.+ ..+.+|+.++.+++.++.+.+.+...+  .++..+.+|..+      .+....+. 
T Consensus         7 kgK~alVTGas~GI-G~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~-   82 (259)
T d1xq1a_           7 KAKTVLVTGGTKGI-GHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSSM-   82 (259)
T ss_dssp             TTCEEEETTTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEeccCCCHHHHHHHHHHHHHH-
Confidence            57788888876554 45555443 236799999999999988888887765  358888888753      22222111 


Q ss_pred             cCCCCeeEEEEcC
Q 026461          143 ENEGSFDYAFVDA  155 (238)
Q Consensus       143 ~~~~~fD~V~~d~  155 (238)
                       -.+..|+++.++
T Consensus        83 -~~g~idilvnnA   94 (259)
T d1xq1a_          83 -FGGKLDILINNL   94 (259)
T ss_dssp             -HTTCCSEEEEEC
T ss_pred             -hCCCcccccccc
Confidence             036799998774

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=85.83  E-value=5.2  Score=29.49  Aligned_cols=78  Identities=12%  Similarity=0.031  Sum_probs=50.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH------HHHHHHhc
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY  141 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~~~~~~  141 (238)
                      ...+.+|-.|++. ..+..+++.+ ..+.+|+.++.+.+.++...+   +.+  .++.++++|..+      .+.....+
T Consensus         3 l~gK~alItGas~-GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~---~~~--~~~~~~~~Dls~~~~i~~~~~~i~~~   76 (241)
T d2a4ka1           3 LSGKTILVTGAAS-GIGRAALDLFAREGASLVAVDREERLLAEAVA---ALE--AEAIAVVADVSDPKAVEAVFAEALEE   76 (241)
T ss_dssp             TTTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---TCC--SSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---HcC--CceEEEEecCCCHHHHHHHHHHHHHH
Confidence            3578888888764 4556666555 236899999999876654433   333  568888888653      22222222


Q ss_pred             ccCCCCeeEEEEcC
Q 026461          142 SENEGSFDYAFVDA  155 (238)
Q Consensus       142 ~~~~~~fD~V~~d~  155 (238)
                         .+++|+++.++
T Consensus        77 ---~g~iDiLinnA   87 (241)
T d2a4ka1          77 ---FGRLHGVAHFA   87 (241)
T ss_dssp             ---HSCCCEEEEGG
T ss_pred             ---hCCccEecccc
Confidence               37899998864

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=85.76  E-value=1.8  Score=32.45  Aligned_cols=80  Identities=16%  Similarity=0.134  Sum_probs=53.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH------HHHHHHhc
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY  141 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~~~~~~  141 (238)
                      .+++.+|-.|.+. ..+..+++.+ ..+.+|+.++.+++.++.+.+.+.   ...++.++.+|..+      .+....+.
T Consensus         4 L~gK~alVTGas~-GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (251)
T d1zk4a1           4 LDGKVAIITGGTL-GIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVG---TPDQIQFFQHDSSDEDGWTKLFDATEKA   79 (251)
T ss_dssp             TTTCEEEETTTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---CTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC---CCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            3567788778554 4455555544 236899999999988887777663   23578899988753      22222222


Q ss_pred             ccCCCCeeEEEEcC
Q 026461          142 SENEGSFDYAFVDA  155 (238)
Q Consensus       142 ~~~~~~fD~V~~d~  155 (238)
                         .++.|+++.++
T Consensus        80 ---~G~iDiLVnnA   90 (251)
T d1zk4a1          80 ---FGPVSTLVNNA   90 (251)
T ss_dssp             ---HSSCCEEEECC
T ss_pred             ---hCCceEEEecc
Confidence               47899988764

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=85.66  E-value=4.2  Score=28.29  Aligned_cols=98  Identities=15%  Similarity=0.045  Sum_probs=55.4

Q ss_pred             EEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEE
Q 026461           74 TIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  152 (238)
Q Consensus        74 vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~  152 (238)
                      |--||+  |..+..|+..+- .+.+|++.|.+++..+...+............. ..+..++...+       ...+.++
T Consensus         4 IGvIGl--G~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~   73 (178)
T d1pgja2           4 VGVVGL--GVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKA-FETMEAFAASL-------KKPRKAL   73 (178)
T ss_dssp             EEEECC--SHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEE-CSCHHHHHHHB-------CSSCEEE
T ss_pred             EEEEee--hHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhh-hhhhhHHHHhc-------ccceEEE
Confidence            445666  666666666552 246899999999887776655333222232332 22333343333       3344444


Q ss_pred             Ec-CCccchHHHHHHHHhccCCCeEEEEec
Q 026461          153 VD-ADKDNYCNYHERLMKLLKVGGIAVYDN  181 (238)
Q Consensus       153 ~d-~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (238)
                      .. .........+..+...+++|.+++-..
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~iii~~s  103 (178)
T d1pgja2          74 ILVQAGAATDSTIEQLKKVFEKGDILVDTG  103 (178)
T ss_dssp             ECCCCSHHHHHHHHHHHHHCCTTCEEEECC
T ss_pred             EeecCcchhhhhhhhhhhhccccceecccC
Confidence            33 333344566677788899988776543

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.61  E-value=3.1  Score=31.95  Aligned_cols=83  Identities=10%  Similarity=0.076  Sum_probs=54.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcC---CCCcEEEEecchhH------HHHHH
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAG---VDHKINFIESEALS------VLDQL  138 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~------~l~~~  138 (238)
                      .+++.+|-.|++.| .+..+++.+ ..+.+|+.++.+++.++.+.+.+....   ...++..+.+|..+      .+...
T Consensus        10 L~gKvalITGas~G-IG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   88 (297)
T d1yxma1          10 LQGQVAIVTGGATG-IGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   88 (297)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence            46788888886655 445555544 236799999999998887777665432   12468888888653      22222


Q ss_pred             HhcccCCCCeeEEEEcC
Q 026461          139 LKYSENEGSFDYAFVDA  155 (238)
Q Consensus       139 ~~~~~~~~~fD~V~~d~  155 (238)
                      .+.   .+..|+++.++
T Consensus        89 ~~~---~G~iDiLVnnA  102 (297)
T d1yxma1          89 LDT---FGKINFLVNNG  102 (297)
T ss_dssp             HHH---HSCCCEEEECC
T ss_pred             HHH---hCCeEEEEeec
Confidence            222   47899999775

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=85.39  E-value=2.5  Score=31.70  Aligned_cols=81  Identities=15%  Similarity=0.132  Sum_probs=50.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCC-chhHHHHHHHHHHcCCCCcEEEEecchhH------HHHHHHhc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVN-RETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY  141 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~~~~~~  141 (238)
                      ++|.+|-.|++.| .+..+++.+. .+.+|+.++.+ ++.++.+.+.+...+ ..++.++.+|..+      .+....++
T Consensus         3 ~gK~alITGas~G-IG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (260)
T d1x1ta1           3 KGKVAVVTGSTSG-IGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVRQ   80 (260)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred             CcCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            5677787776654 4555554442 35799999986 456666666554332 1358888888753      22222222


Q ss_pred             ccCCCCeeEEEEcC
Q 026461          142 SENEGSFDYAFVDA  155 (238)
Q Consensus       142 ~~~~~~fD~V~~d~  155 (238)
                         .++.|+++.++
T Consensus        81 ---~G~iDiLVnnA   91 (260)
T d1x1ta1          81 ---MGRIDILVNNA   91 (260)
T ss_dssp             ---HSCCSEEEECC
T ss_pred             ---hCCCcEEEeec
Confidence               47899999775

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.09  E-value=7.1  Score=30.40  Aligned_cols=123  Identities=12%  Similarity=0.150  Sum_probs=66.8

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC------------------
Q 026461           58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG------------------  119 (238)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~------------------  119 (238)
                      ...++...+...+...|+-+|||.=.....+....+ ..+++=||. |+.++.=++.+.+.+                  
T Consensus        84 id~~v~~Fl~~~~~~QVV~LGaG~DTr~~Rl~~~~~-~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~  161 (328)
T d1rjda_          84 IDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPF  161 (328)
T ss_dssp             HHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCT-TEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTE
T ss_pred             HHHHHHHHHHHCCCcEEEEeCCccchHHHHhhccCC-CcEEEECCc-HHHHHHHHHHHHhchhhhhhccccccccccccc
Confidence            344445555556667999999987766666766554 344444444 444444444443211                  


Q ss_pred             --CCCcEEEEecchhHH--HHHHHhcccCCCCeeEEEEcC-----CccchHHHHHHHHhccCCCeEEEEecc
Q 026461          120 --VDHKINFIESEALSV--LDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNT  182 (238)
Q Consensus       120 --~~~~v~~~~~d~~~~--l~~~~~~~~~~~~fD~V~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (238)
                        ..++..++-+|..+.  +..+...+......=+++.-+     ........++.+....+.+..++.+-+
T Consensus       162 ~~~s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~~~~~i~YE~i  233 (328)
T d1rjda_         162 LIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSHGLWISYDPI  233 (328)
T ss_dssp             EEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSSEEEEEEEEC
T ss_pred             cCCCCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCCCceEEEeccC
Confidence              124577888887653  333332211111222444433     234456677777777776666666544

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=84.76  E-value=0.62  Score=29.32  Aligned_cols=82  Identities=12%  Similarity=-0.021  Sum_probs=45.4

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461           69 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  147 (238)
Q Consensus        69 ~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~  147 (238)
                      .+.++|+-+|.| +|.++..++...  +.+|++.|..+.....  +.+     ...+.+..+...+.  .+       ..
T Consensus         3 ~~~K~v~ViGlG~sG~s~a~~L~~~--g~~v~~~D~~~~~~~~--~~~-----~~~~~~~~~~~~~~--~~-------~~   64 (93)
T d2jfga1           3 YQGKNVVIIGLGLTGLSCVDFFLAR--GVTPRVMDTRMTPPGL--DKL-----PEAVERHTGSLNDE--WL-------MA   64 (93)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHT--TCCCEEEESSSSCTTG--GGS-----CTTSCEEESBCCHH--HH-------HH
T ss_pred             cCCCEEEEEeECHHHHHHHHHHHHC--CCEEEEeeCCcCchhH--HHH-----hhccceeecccchh--hh-------cc
Confidence            356789999986 555555544443  5789999985542111  111     12234444332221  11       47


Q ss_pred             eeEEEEcCCccchHHHHHHHH
Q 026461          148 FDYAFVDADKDNYCNYHERLM  168 (238)
Q Consensus       148 fD~V~~d~~~~~~~~~~~~~~  168 (238)
                      +|+|++....+...+.++.+.
T Consensus        65 ~d~vi~SPGi~~~~~~~~~a~   85 (93)
T d2jfga1          65 ADLIVASPGIALAHPSLSAAA   85 (93)
T ss_dssp             CSEEEECTTSCTTSHHHHHHH
T ss_pred             CCEEEECCCCCCCCHHHHHHH
Confidence            899999876544444555443

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=84.64  E-value=5  Score=29.76  Aligned_cols=75  Identities=19%  Similarity=0.172  Sum_probs=47.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH------HHHHHHhc
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY  141 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~~~~~~  141 (238)
                      ..+|.+|-.|++.| .+..+++.+ ..+.+|+.+|.+++..+.+++.    +    ..++++|..+      .+....++
T Consensus         3 l~GK~alITGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~----~----~~~~~~Dv~~~~~v~~~~~~~~~~   73 (248)
T d2d1ya1           3 FAGKGVLVTGGARG-IGRAIAQAFAREGALVALCDLRPEGKEVAEAI----G----GAFFQVDLEDERERVRFVEEAAYA   73 (248)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSTTHHHHHHHH----T----CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc----C----CeEEEEeCCCHHHHHHHHHHHHHh
Confidence            46788888886544 455555544 2368999999998876655432    2    3566777643      23332222


Q ss_pred             ccCCCCeeEEEEcC
Q 026461          142 SENEGSFDYAFVDA  155 (238)
Q Consensus       142 ~~~~~~fD~V~~d~  155 (238)
                         -++.|+++.++
T Consensus        74 ---~G~iDiLVnnA   84 (248)
T d2d1ya1          74 ---LGRVDVLVNNA   84 (248)
T ss_dssp             ---HSCCCEEEECC
T ss_pred             ---cCCCCeEEEeC
Confidence               47899998764

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.78  E-value=2.4  Score=31.53  Aligned_cols=76  Identities=12%  Similarity=0.091  Sum_probs=50.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH--HHHHHHhcccCCC
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEG  146 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~l~~~~~~~~~~~  146 (238)
                      .+|++|-.|++.| .+..+++.+ ..+.+|+.+|.+++.++...+.+      ..+..++.|..+  ......++   -+
T Consensus         6 ~GK~~lITGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~~---~g   75 (244)
T d1pr9a_           6 AGRRVLVTGAGKG-IGRGTVQALHATGARVVAVSRTQADLDSLVREC------PGIEPVCVDLGDWEATERALGS---VG   75 (244)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTT---CC
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHH---hC
Confidence            6788998896654 455555544 23679999999988776655433      236777778754  23333333   57


Q ss_pred             CeeEEEEcC
Q 026461          147 SFDYAFVDA  155 (238)
Q Consensus       147 ~fD~V~~d~  155 (238)
                      ++|+++.++
T Consensus        76 ~iDilVnnA   84 (244)
T d1pr9a_          76 PVDLLVNNA   84 (244)
T ss_dssp             CCCEEEECC
T ss_pred             CceEEEecc
Confidence            899998764

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.56  E-value=1.7  Score=34.53  Aligned_cols=78  Identities=17%  Similarity=0.119  Sum_probs=45.8

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCch-----------------hHHHHHHHHHHcCCCCcEEEEecchh
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRE-----------------TYEIGLPIIKKAGVDHKINFIESEAL  132 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~-----------------~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (238)
                      +++||-.| |+|..+.+++..+- .+..|+++|--..                 ..+.....-...+  .+++++.+|..
T Consensus         1 g~kILVTG-atGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~Dl~   77 (393)
T d1i24a_           1 GSRVMVIG-GDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTG--KSIELYVGDIC   77 (393)
T ss_dssp             -CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHC--CCCEEEESCTT
T ss_pred             CCEEEEEC-CCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcC--CCcEEEEccCC
Confidence            36888888 59999988887662 3578999983111                 1111111111112  46899999986


Q ss_pred             H--HHHHHHhcccCCCCeeEEEEcC
Q 026461          133 S--VLDQLLKYSENEGSFDYAFVDA  155 (238)
Q Consensus       133 ~--~l~~~~~~~~~~~~fD~V~~d~  155 (238)
                      +  .+.....    ...+|.|+--+
T Consensus        78 d~~~l~~~~~----~~~~d~ViHlA   98 (393)
T d1i24a_          78 DFEFLAESFK----SFEPDSVVHFG   98 (393)
T ss_dssp             SHHHHHHHHH----HHCCSEEEECC
T ss_pred             CHHHHHHHHH----hhcchheeccc
Confidence            4  3333321    24689988644

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=83.50  E-value=5.5  Score=30.08  Aligned_cols=82  Identities=15%  Similarity=0.103  Sum_probs=53.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH------HHHHHhc
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKY  141 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~~~  141 (238)
                      .++|++|-.|+..| .+..+++.+. .+.+|+.+|.+++.++.+.+.+.... ..++.++.+|..+.      .......
T Consensus        23 l~gK~alITGas~G-IG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~-g~~~~~~~~D~~~~~~v~~~~~~~~~~  100 (294)
T d1w6ua_          23 FQGKVAFITGGGTG-LGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIKV  100 (294)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc-CCceEEEEecccChHHHHHHhhhhhhh
Confidence            46688888887554 5555555442 36799999999988877666554332 24577888886532      2222222


Q ss_pred             ccCCCCeeEEEEcC
Q 026461          142 SENEGSFDYAFVDA  155 (238)
Q Consensus       142 ~~~~~~fD~V~~d~  155 (238)
                         .+..|+++..+
T Consensus       101 ---~g~iDilvnnA  111 (294)
T d1w6ua_         101 ---AGHPNIVINNA  111 (294)
T ss_dssp             ---TCSCSEEEECC
T ss_pred             ---ccccchhhhhh
Confidence               58899998764

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=83.45  E-value=1.6  Score=30.22  Aligned_cols=41  Identities=15%  Similarity=0.098  Sum_probs=29.8

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHH
Q 026461           71 AKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLP  113 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~  113 (238)
                      .++||-||+  |..+..+|+.+.. +.+|+.+|.+.+.++...+
T Consensus         2 ~K~IliiGa--G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~   43 (182)
T d1e5qa1           2 TKSVLMLGS--GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSA   43 (182)
T ss_dssp             CCEEEEECC--STTHHHHHHHHHTTTCEEEEEESCHHHHHHHHT
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCEEEEEECChHHHHHHHh
Confidence            478999988  6666666665532 4689999999987766544

>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Aerobic respiration control protein ArcA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.40  E-value=2.3  Score=27.92  Aligned_cols=76  Identities=11%  Similarity=0.052  Sum_probs=51.0

Q ss_pred             CEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccch--HHHHHHHHhccCC
Q 026461           96 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY--CNYHERLMKLLKV  173 (238)
Q Consensus        96 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~--~~~~~~~~~~L~~  173 (238)
                      .+|..+|-++...+..+..+...|+  .+. ...++.+.+..+.     ..+||+|++|...+..  .++++.+... ..
T Consensus         3 p~ILiVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~l~-----~~~~dlii~D~~mp~~~G~~~~~~~r~~-~~   73 (121)
T d1xhfa1           3 PHILIVEDELVTRNTLKSIFEAEGY--DVF-EATDGAEMHQILS-----EYDINLVIMDINLPGKNGLLLARELREQ-AN   73 (121)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEECSSCSSSCHHHHHHHHHHH-CC
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCC--EEE-EECChHHHHHHHH-----hcCCCEEEeecccCCccCcHHHHHHHhc-CC
Confidence            3899999999999999999999886  233 4456777766664     3689999999644332  3444444332 22


Q ss_pred             CeEEEEe
Q 026461          174 GGIAVYD  180 (238)
Q Consensus       174 gG~lv~~  180 (238)
                      =.+|++.
T Consensus        74 ~pii~lt   80 (121)
T d1xhfa1          74 VALMFLT   80 (121)
T ss_dssp             CEEEEEE
T ss_pred             CcEEEEE
Confidence            2355554

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=83.32  E-value=3.2  Score=30.75  Aligned_cols=91  Identities=12%  Similarity=0.023  Sum_probs=51.8

Q ss_pred             CCCEEEEEcccccHHHH-HHHhhCCCCCEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCcEEEEec
Q 026461           70 NAKKTIEIGVFTGYSLL-LTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIES  129 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~-~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~  129 (238)
                      +..+|+-+|||.-++.+ ..+.... -++++.+|.+.                   ..++.+++.+.+.+..-+++.+..
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~G-vg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~~  107 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASAG-VGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNA  107 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcC-CCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhhh
Confidence            44689999997433332 2222223 47999999644                   357788888888776555665554


Q ss_pred             chhH-HHHHHHhcccCCCCeeEEEEcCCccchHHHHHHH
Q 026461          130 EALS-VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL  167 (238)
Q Consensus       130 d~~~-~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~  167 (238)
                      .... .....      ...+|+|+...+.......+...
T Consensus       108 ~~~~~~~~~~------~~~~divid~~d~~~~~~~in~~  140 (247)
T d1jw9b_         108 LLDDAELAAL------IAEHDLVLDCTDNVAVRNQLNAG  140 (247)
T ss_dssp             CCCHHHHHHH------HHTSSEEEECCSSHHHHHHHHHH
T ss_pred             hhhhcccccc------ccccceeeeccchhhhhhhHHHH
Confidence            3222 22222      25778887554433333333333

>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: NTRC receiver domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.06  E-value=4.4  Score=26.43  Aligned_cols=67  Identities=13%  Similarity=0.092  Sum_probs=49.5

Q ss_pred             CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccch--HHHHHHHHh
Q 026461           95 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY--CNYHERLMK  169 (238)
Q Consensus        95 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~--~~~~~~~~~  169 (238)
                      .++|..||-++......+..+...|+  .+. ...++.+.+..+.     ...||+|++|...+..  .++++.+.+
T Consensus         3 k~~ILIVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~~a~~~l~-----~~~~dlii~D~~mp~~~G~el~~~l~~   71 (123)
T d1krwa_           3 RGIVWVVDDDSSIRWVLERALAGAGL--TCT-TFENGNEVLAALA-----SKTPDVLLSDIRMPGMDGLALLKQIKQ   71 (123)
T ss_dssp             CCEEEEESSSHHHHHHHHHHHHHTTC--EEE-EESSSHHHHHHHT-----TCCCSEEEECCSSSSSTTHHHHHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCC--EEE-EeCCHHHHHHHHH-----hCCCCEEEehhhcCCchHHHHHHHHHH
Confidence            46899999999999999999999886  344 4557777776663     4789999999654432  455666644

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=83.00  E-value=5.6  Score=27.75  Aligned_cols=91  Identities=15%  Similarity=0.056  Sum_probs=47.9

Q ss_pred             CEEEEEcccccHHH--HHHHhhCCCCCEEEE-EeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461           72 KKTIEIGVFTGYSL--LLTALTIPEDGQITA-IDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  148 (238)
Q Consensus        72 ~~vLeiG~G~G~~t--~~la~~~~~~~~v~~-iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f  148 (238)
                      -+|.-||||.-...  +......+...++++ +|.+++..+...+.   .+.   .. ...|..+.+.        ....
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~---~~~---~~-~~~~~~ell~--------~~~i   68 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKM---VGN---PA-VFDSYEELLE--------SGLV   68 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHH---HSS---CE-EESCHHHHHH--------SSCC
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcc---ccc---cc-eeeeeecccc--------cccc
Confidence            47888999642222  223334443457775 48877665544433   332   22 2345555544        4689


Q ss_pred             eEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461          149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  180 (238)
Q Consensus       149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (238)
                      |+|++..+.....++...   +|+.|=-++++
T Consensus        69 d~v~I~tp~~~h~~~~~~---al~~gk~V~~E   97 (181)
T d1zh8a1          69 DAVDLTLPVELNLPFIEK---ALRKGVHVICE   97 (181)
T ss_dssp             SEEEECCCGGGHHHHHHH---HHHTTCEEEEE
T ss_pred             ceeecccccccccccccc---ccccchhhhcC
Confidence            999987655443333333   33333344444

>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=82.91  E-value=4.8  Score=26.78  Aligned_cols=75  Identities=11%  Similarity=0.104  Sum_probs=51.2

Q ss_pred             EEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccc--hHHHHHHHHhccCCC
Q 026461           97 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKVG  174 (238)
Q Consensus        97 ~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~--~~~~~~~~~~~L~~g  174 (238)
                      +|..||-++...+..+..+...|+  .+. ...++.+.+..+.     ...||+|++|...+.  -.++++.+... .|.
T Consensus         2 kILiVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~eAl~~l~-----~~~~dlvilD~~mp~~~G~e~~~~lr~~-~~~   72 (137)
T d1ny5a1           2 NVLVIEDDKVFRGLLEEYLSMKGI--KVE-SAERGKEAYKLLS-----EKHFNVVLLDLLLPDVNGLEILKWIKER-SPE   72 (137)
T ss_dssp             EEEEECCCHHHHHHHHHHHHHHTC--EEE-EESSHHHHHHHHH-----HSCCSEEEEESBCSSSBHHHHHHHHHHH-CTT
T ss_pred             EEEEEecCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHhh-----ccccccchHHHhhhhhhHHHHHHHHHHh-CCC
Confidence            578899999999999999999886  344 3556767666653     368999999964333  34566666443 333


Q ss_pred             -eEEEEe
Q 026461          175 -GIAVYD  180 (238)
Q Consensus       175 -G~lv~~  180 (238)
                       -+|++.
T Consensus        73 ~piI~lT   79 (137)
T d1ny5a1          73 TEVIVIT   79 (137)
T ss_dssp             SEEEEEE
T ss_pred             CCEEEEE
Confidence             355553

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=82.65  E-value=5.2  Score=31.37  Aligned_cols=81  Identities=14%  Similarity=0.145  Sum_probs=49.9

Q ss_pred             CEEEEEcccccHHHHHHHhhC--CCCCEEEEEeC---------CchhHHHHHHHHHHcC------CCCcEEEEecchhH-
Q 026461           72 KKTIEIGVFTGYSLLLTALTI--PEDGQITAIDV---------NRETYEIGLPIIKKAG------VDHKINFIESEALS-  133 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~--~~~~~v~~iD~---------~~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~-  133 (238)
                      .+||-.| |+|..+.++++.+  ..+.+|+++|.         ..+..+.....+....      ...++.++.+|..+ 
T Consensus         3 MKVLITG-~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~   81 (383)
T d1gy8a_           3 MRVLVCG-GAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE   81 (383)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred             CEEEEeC-CCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCH
Confidence            4788676 8999998888766  23578999983         1122233333333221      12468899999865 


Q ss_pred             -HHHHHHhcccCCCCeeEEEEcCC
Q 026461          134 -VLDQLLKYSENEGSFDYAFVDAD  156 (238)
Q Consensus       134 -~l~~~~~~~~~~~~fD~V~~d~~  156 (238)
                       .+.....+   ..++|.|+.-+.
T Consensus        82 ~~l~~~~~~---~~~~d~ViH~Aa  102 (383)
T d1gy8a_          82 DFLNGVFTR---HGPIDAVVHMCA  102 (383)
T ss_dssp             HHHHHHHHH---SCCCCEEEECCC
T ss_pred             HHhhhhhhc---cceeehhhcccc
Confidence             23333222   467899997654

>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein DctD, receiver domain
species: Sinorhizobium meliloti [TaxId: 382]

Probab=82.54  E-value=5.1  Score=26.79  Aligned_cols=75  Identities=13%  Similarity=0.129  Sum_probs=52.7

Q ss_pred             EEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccch--HHHHHHHHhccCCC
Q 026461           97 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY--CNYHERLMKLLKVG  174 (238)
Q Consensus        97 ~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~--~~~~~~~~~~L~~g  174 (238)
                      +|..||-++......+..+...|+  .+.. ..++.+.+..+.     ...||+|++|...+..  .++++.+... .|+
T Consensus         2 ~ILiVDDd~~~~~~l~~~L~~~g~--~v~~-~~~~~~al~~l~-----~~~~dlil~D~~mP~~~G~el~~~lr~~-~~~   72 (140)
T d1qkka_           2 SVFLIDDDRDLRKAMQQTLELAGF--TVSS-FASATEALAGLS-----ADFAGIVISDIRMPGMDGLALFRKILAL-DPD   72 (140)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTC--EEEE-ESCHHHHHHTCC-----TTCCSEEEEESCCSSSCHHHHHHHHHHH-CTT
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCC--EEEE-eCChHHHHHHHh-----ccCcchHHHhhccCCCCHHHHHHHHHHh-CCC
Confidence            688999999999999999998885  2443 357777766653     5789999999654433  4666666543 343


Q ss_pred             -eEEEEe
Q 026461          175 -GIAVYD  180 (238)
Q Consensus       175 -G~lv~~  180 (238)
                       -+|++.
T Consensus        73 ~pvI~lT   79 (140)
T d1qkka_          73 LPMILVT   79 (140)
T ss_dssp             SCEEEEE
T ss_pred             CcEEEEE
Confidence             355554

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=82.13  E-value=3.6  Score=30.40  Aligned_cols=79  Identities=14%  Similarity=0.131  Sum_probs=50.6

Q ss_pred             CEEEEEcccccHHHHHHHhhC----CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH------HHHHHHhc
Q 026461           72 KKTIEIGVFTGYSLLLTALTI----PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY  141 (238)
Q Consensus        72 ~~vLeiG~G~G~~t~~la~~~----~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~~~~~~  141 (238)
                      ++||-.|+..| .+..+++.+    ..+.+|+.++.+++.++.+++.....   .++.++.+|..+      ....+...
T Consensus         3 KtilITGas~G-IG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dvs~~~~v~~~~~~i~~~   78 (248)
T d1snya_           3 NSILITGCNRG-LGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNH---SNIHILEIDLRNFDAYDKLVADIEGV   78 (248)
T ss_dssp             SEEEESCCSSH-HHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHC---TTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred             CEEEEeCCCCH-HHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcC---CcEEEEEEEeccHHHHHHHHhhhHHH
Confidence            57887786555 556665433    33679999999998887776655442   468999888643      22222110


Q ss_pred             ccCCCCeeEEEEcC
Q 026461          142 SENEGSFDYAFVDA  155 (238)
Q Consensus       142 ~~~~~~fD~V~~d~  155 (238)
                       ...+..|+++.++
T Consensus        79 -~~~~~iDiLvnNA   91 (248)
T d1snya_          79 -TKDQGLNVLFNNA   91 (248)
T ss_dssp             -HGGGCCSEEEECC
T ss_pred             -hhcCCcceEEeec
Confidence             1146899999875

>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0A
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.00  E-value=4.6  Score=26.31  Aligned_cols=75  Identities=16%  Similarity=0.091  Sum_probs=50.4

Q ss_pred             EEEEEeCCchhHHHHHHHHHHcCCCCcEEE--EecchhHHHHHHHhcccCCCCeeEEEEcCCccch--HHHHHHHHhccC
Q 026461           97 QITAIDVNRETYEIGLPIIKKAGVDHKINF--IESEALSVLDQLLKYSENEGSFDYAFVDADKDNY--CNYHERLMKLLK  172 (238)
Q Consensus        97 ~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~--~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~--~~~~~~~~~~L~  172 (238)
                      +|.-+|=++...+..++.+...+.   +..  ...|..+.+..+.     ...||+|++|...+..  .++++.+.....
T Consensus         3 rILivDD~~~~~~~l~~~L~~~~~---~~~v~~a~~g~~al~~~~-----~~~~dlillD~~mP~~dG~e~~~~ir~~~~   74 (123)
T d1dz3a_           3 KVCIADDNRELVSLLDEYISSQPD---MEVIGTAYNGQDCLQMLE-----EKRPDILLLDIIMPHLDGLAVLERIRAGFE   74 (123)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSTT---EEEEEEESSHHHHHHHHH-----HHCCSEEEEESCCSSSCHHHHHHHHHHHCS
T ss_pred             EEEEEeCCHHHHHHHHHHHHhCCC---cEEEEEECCHHHHHHHHH-----hcCCCEEEEcCCCCCCCHHHHHHHHHhcCC
Confidence            688899999999999999877652   332  3457777666654     3589999999765543  456666654443


Q ss_pred             CCe-EEEE
Q 026461          173 VGG-IAVY  179 (238)
Q Consensus       173 ~gG-~lv~  179 (238)
                      ..- ++++
T Consensus        75 ~~~~ii~~   82 (123)
T d1dz3a_          75 HQPNVIML   82 (123)
T ss_dssp             SCCEEEEE
T ss_pred             CCCeEEEE
Confidence            332 4444

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=82.00  E-value=8.9  Score=30.63  Aligned_cols=122  Identities=11%  Similarity=0.099  Sum_probs=74.6

Q ss_pred             cCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CchhHHHHHHHHHHcCCCCcEEEEec-c
Q 026461           53 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIES-E  130 (238)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~v~~~~~-d  130 (238)
                      ...|....+-..++.+......+-..+|-...+..+...++++.+|++.+. -.......++.+.+.|+  .+.+... |
T Consensus        55 ~~nPt~~~le~~la~LEg~~~a~~~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi--~~~~~d~~d  132 (391)
T d1cl1a_          55 RGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGV--TTSWFDPLI  132 (391)
T ss_dssp             TCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTC--EEEEECTTC
T ss_pred             CCChhHHHHHHHHHHHhCCccEEEeccccceeeehhhcccCCCCeEEEecccccchhhhhhhccccccc--ccccccCcc
Confidence            456777777777777777777888887766665555566666788877764 34455556666666664  3555543 3


Q ss_pred             hhHHHHHHHhcccCCCCeeEEEEcCC------ccchHHHHHHHHhccCCCeEEEEeccc
Q 026461          131 ALSVLDQLLKYSENEGSFDYAFVDAD------KDNYCNYHERLMKLLKVGGIAVYDNTL  183 (238)
Q Consensus       131 ~~~~l~~~~~~~~~~~~fD~V~~d~~------~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (238)
                      ...+....      ...-.+||+-.+      ..+.+.. ..+.+.-++|..+++||.+
T Consensus       133 ~~~~~~~i------~~~t~~i~~EtpsNP~l~v~Di~~i-~~~a~~~~~g~~~vVDnT~  184 (391)
T d1cl1a_         133 GADIVKHL------QPNTKIVFLESPGSITMEVHDVPAI-VAAVRSVVPDAIIMIDNTW  184 (391)
T ss_dssp             GGGGGGTC------CTTEEEEEEESSCTTTCCCCCHHHH-HHHHHHHCTTCEEEEECTT
T ss_pred             cccccccc------ccccceeeecccCcccccccccHHH-HHHHHhccCCcEEEEeccc
Confidence            32332222      456789998642      1222322 2333334568889999876

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.81  E-value=3.3  Score=30.74  Aligned_cols=76  Identities=12%  Similarity=0.028  Sum_probs=49.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH--HHHHHHhcccCCC
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEG  146 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~l~~~~~~~~~~~  146 (238)
                      .++++|-.|++.| .+..+++.+ ..+.+|+.++.+++.++...+.+      ..+..+.+|..+  .+....++   -+
T Consensus         4 ~GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~~---~g   73 (242)
T d1cyda_           4 SGLRALVTGAGKG-IGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC------PGIEPVCVDLGDWDATEKALGG---IG   73 (242)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTT---CC
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHH---cC
Confidence            5688898886655 445555544 23689999999987766555432      246777788764  23344333   57


Q ss_pred             CeeEEEEcC
Q 026461          147 SFDYAFVDA  155 (238)
Q Consensus       147 ~fD~V~~d~  155 (238)
                      +.|+++.++
T Consensus        74 ~iDilVnnA   82 (242)
T d1cyda_          74 PVDLLVNNA   82 (242)
T ss_dssp             CCSEEEECC
T ss_pred             CCeEEEECC
Confidence            899998764

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.39  E-value=2.5  Score=27.43  Aligned_cols=50  Identities=22%  Similarity=0.185  Sum_probs=36.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCc--------hhHHHHHHHHHHcCC
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNR--------ETYEIGLPIIKKAGV  120 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~--------~~~~~a~~~~~~~~~  120 (238)
                      ..|++++-||.  |+.++.+|..+. .+.+|+.++..+        +..+...+.+++.|.
T Consensus        20 ~~p~~v~IiGg--G~ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI   78 (117)
T d1ebda2          20 EVPKSLVVIGG--GYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGV   78 (117)
T ss_dssp             SCCSEEEEECC--SHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTC
T ss_pred             hcCCeEEEECC--CccceeeeeeecccccEEEEEEecceecccccchhHHHHHHHHHhcCC
Confidence            45789999998  677777776552 257899999755        456777778887764

>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Bacillus subtilis [TaxId: 1423]

Probab=81.39  E-value=5.1  Score=25.96  Aligned_cols=77  Identities=12%  Similarity=0.069  Sum_probs=52.1

Q ss_pred             CEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccch--HHHHHHHHhccCC
Q 026461           96 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY--CNYHERLMKLLKV  173 (238)
Q Consensus        96 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~--~~~~~~~~~~L~~  173 (238)
                      .+|..+|-++...+..+..+...|+  .+. ...++.+.+..+.     ..+||+|++|...+..  .+.+..+...-..
T Consensus         3 krILiVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~l~-----~~~~dlillD~~mp~~~G~~~~~~~r~~~~~   74 (121)
T d1mvoa_           3 KKILVVDDEESIVTLLQYNLERSGY--DVI-TASDGEEALKKAE-----TEKPDLIVLDVMLPKLDGIEVCKQLRQQKLM   74 (121)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HHCCSEEEEESSCSSSCHHHHHHHHHHTTCC
T ss_pred             CCEEEEECCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHh-----cccccEEEecccccCCCCchhhhhhhccCCC
Confidence            4799999999999999999999886  233 4556777666654     3589999999754442  3445555433222


Q ss_pred             CeEEEEe
Q 026461          174 GGIAVYD  180 (238)
Q Consensus       174 gG~lv~~  180 (238)
                      -.++++.
T Consensus        75 ~~ii~lt   81 (121)
T d1mvoa_          75 FPILMLT   81 (121)
T ss_dssp             CCEEEEE
T ss_pred             CEEEEEE
Confidence            3455553

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.37  E-value=7.3  Score=31.54  Aligned_cols=89  Identities=12%  Similarity=0.026  Sum_probs=54.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhC--CCCCEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCcEEEEec
Q 026461           71 AKKTIEIGVFTGYSLLLTALTI--PEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIES  129 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~--~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~  129 (238)
                      ..+||-||||.  .+..++..+  ..-++++-+|.+.                   ..++.|.+.+...+..-++.....
T Consensus        37 ~~kVlvvG~Gg--lG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~  114 (426)
T d1yovb1          37 TCKVLVIGAGG--LGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFN  114 (426)
T ss_dssp             HCCEEEECSST--THHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECS
T ss_pred             cCeEEEECCCH--HHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeec
Confidence            46799999963  333333322  1146899999744                   346777777777765556777776


Q ss_pred             chhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHH
Q 026461          130 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL  167 (238)
Q Consensus       130 d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~  167 (238)
                      +..+....+      -.+||+|+...+......++...
T Consensus       115 ~i~~~~~~~------~~~~DlVi~~~Dn~~aR~~in~~  146 (426)
T d1yovb1         115 KIQDFNDTF------YRQFHIIVCGLDSIIARRWINGM  146 (426)
T ss_dssp             CGGGBCHHH------HTTCSEEEECCSCHHHHHHHHHH
T ss_pred             cccchHHHH------HHhcchheeccCcHHHHHHHHHH
Confidence            665543333      27899998765433334444333

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.35  E-value=1.8  Score=28.59  Aligned_cols=49  Identities=20%  Similarity=0.220  Sum_probs=37.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCc--------hhHHHHHHHHHHcCC
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNR--------ETYEIGLPIIKKAGV  120 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~--------~~~~~a~~~~~~~~~  120 (238)
                      .|++++-||.  |+.++.+|..+. .+.+|+-++..+        +..+.+++.+++.|+
T Consensus        22 ~p~~~vIiG~--G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV   79 (122)
T d1v59a2          22 IPKRLTIIGG--GIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGL   79 (122)
T ss_dssp             CCSEEEEECC--SHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEECC--CchHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHhccc
Confidence            5789999998  667777666542 257899999754        778888889988875

>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: TorCAD operon transcriptional regulator TorD, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.32  E-value=3.4  Score=26.80  Aligned_cols=76  Identities=12%  Similarity=0.140  Sum_probs=51.1

Q ss_pred             CEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccch--HHHHHHHHhccCC
Q 026461           96 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY--CNYHERLMKLLKV  173 (238)
Q Consensus        96 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~--~~~~~~~~~~L~~  173 (238)
                      .+|..+|-++...+.....+...|+  .+. ...++.+.+..+.     ...||+|++|...+..  ...++.. +...+
T Consensus         2 ~rILiVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~~a~~~~~-----~~~~dliilD~~mp~~~g~~~~~~~-~~~~~   72 (120)
T d1zgza1           2 HHIVIVEDEPVTQARLQSYFTQEGY--TVS-VTASGAGLREIMQ-----NQSVDLILLDINLPDENGLMLTRAL-RERST   72 (120)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEEESCCSSSCHHHHHHHH-HTTCC
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHH-----hcCCCEEeeehhhccchhHHHHHHH-hccCC
Confidence            4799999999999999999999885  243 4456666666553     3689999999754432  3344443 33344


Q ss_pred             CeEEEEe
Q 026461          174 GGIAVYD  180 (238)
Q Consensus       174 gG~lv~~  180 (238)
                      -.+|++.
T Consensus        73 ~piI~lt   79 (120)
T d1zgza1          73 VGIILVT   79 (120)
T ss_dssp             CEEEEEE
T ss_pred             CeEEEEE
Confidence            4466554

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=81.20  E-value=1.8  Score=33.67  Aligned_cols=80  Identities=6%  Similarity=-0.086  Sum_probs=53.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhcccCC
Q 026461           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENE  145 (238)
Q Consensus        69 ~~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~~~~~  145 (238)
                      .++++||-.| |+|+.+.+++..+ ..+.+|+++..+....+..++............++.+|..+.  +...      -
T Consensus         9 ~~gk~VlVTG-~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~------~   81 (342)
T d1y1pa1           9 PEGSLVLVTG-ANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEV------I   81 (342)
T ss_dssp             CTTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTT------T
T ss_pred             CCcCEEEEEC-CCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhh------c
Confidence            4568999998 5699999888765 225689998888777776666555555445556677887653  1111      2


Q ss_pred             CCeeEEEEcC
Q 026461          146 GSFDYAFVDA  155 (238)
Q Consensus       146 ~~fD~V~~d~  155 (238)
                      ...|.|+..+
T Consensus        82 ~~~~~v~~~a   91 (342)
T d1y1pa1          82 KGAAGVAHIA   91 (342)
T ss_dssp             TTCSEEEECC
T ss_pred             ccchhhhhhc
Confidence            4678777543

>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: DNA-binding response regulator MicA, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=81.15  E-value=2.6  Score=27.41  Aligned_cols=75  Identities=15%  Similarity=0.094  Sum_probs=51.3

Q ss_pred             EEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccch--HHHHHHHHhccCCC
Q 026461           97 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY--CNYHERLMKLLKVG  174 (238)
Q Consensus        97 ~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~--~~~~~~~~~~L~~g  174 (238)
                      +|..+|-++...+..+..+...|+  .+. ...+..+.+..+.     ..+||+|++|...+..  .+.++.+.+ .++-
T Consensus         2 rILiVdDd~~~~~~l~~~L~~~g~--~v~-~a~~~~eal~~~~-----~~~~dlillD~~mp~~~G~~~~~~i~~-~~~~   72 (117)
T d2a9pa1           2 KILIVDDEKPISDIIKFNMTKEGY--EVV-TAFNGREALEQFE-----AEQPDIIILDLMLPEIDGLEVAKTIRK-TSSV   72 (117)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HHCCSEEEECSSCSSSCHHHHHHHHHT-TCCC
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHH-----hcCCCEEEeccccCCCCccHHHHHHHh-CCCC
Confidence            688999999999999999999886  243 4567777766664     3589999999654432  455555543 2333


Q ss_pred             eEEEEe
Q 026461          175 GIAVYD  180 (238)
Q Consensus       175 G~lv~~  180 (238)
                      -++++.
T Consensus        73 pvI~lt   78 (117)
T d2a9pa1          73 PILMLS   78 (117)
T ss_dssp             CEEEEE
T ss_pred             CEEEEe
Confidence            355554

>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein PrrA, N-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.11  E-value=5.3  Score=25.99  Aligned_cols=76  Identities=11%  Similarity=0.071  Sum_probs=52.2

Q ss_pred             EEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccc--hHHHHHHHHhccCCC
Q 026461           97 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKVG  174 (238)
Q Consensus        97 ~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~--~~~~~~~~~~~L~~g  174 (238)
                      +|.-||-++...+..++.+...|+  .+. ...+..+.+..+.     ...||+|++|...+.  -.++++.+.+.-+.=
T Consensus         3 kILiVDD~~~~~~~l~~~L~~~g~--~v~-~a~~~~eal~~~~-----~~~~dlvl~D~~mP~~~G~el~~~ir~~~~~~   74 (121)
T d1ys7a2           3 RVLVVDDDSDVLASLERGLRLSGF--EVA-TAVDGAEALRSAT-----ENRPDAIVLDINMPVLDGVSVVTALRAMDNDV   74 (121)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEEESSCSSSCHHHHHHHHHHTTCCC
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHH-----hCCCCEEEEEeeccCcccHHHHHHHHhcCCCC
Confidence            799999999999999999998886  233 4557777776664     368999999975443  345556665432222


Q ss_pred             eEEEEe
Q 026461          175 GIAVYD  180 (238)
Q Consensus       175 G~lv~~  180 (238)
                      -++++.
T Consensus        75 piI~lt   80 (121)
T d1ys7a2          75 PVCVLS   80 (121)
T ss_dssp             CEEEEE
T ss_pred             EEEEEE
Confidence            355554

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=81.00  E-value=6.8  Score=27.18  Aligned_cols=94  Identities=13%  Similarity=0.050  Sum_probs=55.4

Q ss_pred             EEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEE
Q 026461           73 KTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  151 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V  151 (238)
                      +|-=||+  |..+..|+..+-. +.+|++.|.+++.++...+.    +.......-.....+....       ....|.+
T Consensus         4 nIg~IGl--G~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~-------~~~~~~i   70 (176)
T d2pgda2           4 DIALIGL--AVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN----EAKGTKVLGAHSLEEMVSK-------LKKPRRI   70 (176)
T ss_dssp             SEEEECC--SHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT----TTTTSSCEECSSHHHHHHH-------BCSSCEE
T ss_pred             cEEEEeE--hHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHh----ccccccccchhhhhhhhhh-------hcccceE
Confidence            4555676  6666666665532 46899999999887766543    2211111122233333333       3566777


Q ss_pred             EEcC-CccchHHHHHHHHhccCCCeEEEE
Q 026461          152 FVDA-DKDNYCNYHERLMKLLKVGGIAVY  179 (238)
Q Consensus       152 ~~d~-~~~~~~~~~~~~~~~L~~gG~lv~  179 (238)
                      ++.. ........++.+...+++|.+++-
T Consensus        71 i~~~~~~~~v~~v~~~l~~~~~~g~iiid   99 (176)
T d2pgda2          71 ILLVKAGQAVDNFIEKLVPLLDIGDIIID   99 (176)
T ss_dssp             EECSCTTHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             EEecCchHHHHHHHHHHHhccccCcEEEe
Confidence            7654 334456677788888998776554

>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Sinorhizobium meliloti, CheY2 [TaxId: 382]

Probab=80.96  E-value=2.6  Score=27.89  Aligned_cols=67  Identities=6%  Similarity=0.067  Sum_probs=47.8

Q ss_pred             CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccch--HHHHHHHH
Q 026461           95 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY--CNYHERLM  168 (238)
Q Consensus        95 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~--~~~~~~~~  168 (238)
                      .-+|..||-++......++.+...|+.. +. ...++.+.+..+.     ..+||+|++|...+..  .++++.+.
T Consensus         6 ~~kILiVDD~~~~~~~l~~~L~~~g~~~-v~-~a~~~~~al~~l~-----~~~~dlii~D~~mP~~~G~el~~~lr   74 (129)
T d1p6qa_           6 KIKVLIVDDQVTSRLLLGDALQQLGFKQ-IT-AAGDGEQGMKIMA-----QNPHHLVISDFNMPKMDGLGLLQAVR   74 (129)
T ss_dssp             CCCEEEECSSHHHHHHHHHHHHTTTCSC-EE-CCSSHHHHHHHHH-----TSCCSEEEECSSSCSSCHHHHHHHHT
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCeE-EE-EECCHHHHHHHHH-----hCCCCeEEeeeecCCCChHHHHHHHH
Confidence            4589999999999999999999888632 22 2446666666553     4689999999765443  45556554

>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Escherichia coli [TaxId: 562]

Probab=80.87  E-value=3.2  Score=27.04  Aligned_cols=76  Identities=13%  Similarity=0.097  Sum_probs=51.8

Q ss_pred             EEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccc--hHHHHHHHHh--ccC
Q 026461           97 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK--LLK  172 (238)
Q Consensus        97 ~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~--~~~~~~~~~~--~L~  172 (238)
                      +|.-||-++...+..+..+...|+  .+. ...++.+.+..+.     ..+||+|++|...+.  -.++++.+..  ..+
T Consensus         2 kILiVDD~~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~l~-----~~~~dlil~D~~mp~~~G~~l~~~lr~~~~~~   73 (121)
T d1zesa1           2 RILVVEDEAPIREMVCFVLEQNGF--QPV-EAEDYDSAVNQLN-----EPWPDLILLDWMLPGGSGIQFIKHLKRESMTR   73 (121)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTC--EEE-EECSHHHHHHHSS-----SSCCSEEEECSSCTTSCHHHHHHHHHHSTTTT
T ss_pred             EEEEEeCCHHHHHHHHHHHHHCCC--EEE-EECChHHHHHHHH-----ccCCCEEEeecCCCCCCHHHHHHHHHhCccCC
Confidence            688899999999999999999886  233 4557777777663     478999999965443  2455566543  222


Q ss_pred             CCeEEEEe
Q 026461          173 VGGIAVYD  180 (238)
Q Consensus       173 ~gG~lv~~  180 (238)
                      .--+|++.
T Consensus        74 ~~pvi~lt   81 (121)
T d1zesa1          74 DIPVVMLT   81 (121)
T ss_dssp             TSCEEEEE
T ss_pred             CCeEEEEE
Confidence            22355554

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.76  E-value=7.6  Score=27.61  Aligned_cols=102  Identities=11%  Similarity=0.100  Sum_probs=53.8

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHH------------HHHcCCCCcEEEEecchhHHHHHHH
Q 026461           73 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPI------------IKKAGVDHKINFIESEALSVLDQLL  139 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~------------~~~~~~~~~v~~~~~d~~~~l~~~~  139 (238)
                      +|.-||+|  +.++.+|..+. .+.+|+++|.+++.++...+.            +.......+.. ...|..+.+    
T Consensus         2 kI~ViGlG--~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~-~~~~~~~~i----   74 (202)
T d1mv8a2           2 RISIFGLG--YVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLS-GTTDFKKAV----   74 (202)
T ss_dssp             EEEEECCS--TTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEE-EESCHHHHH----
T ss_pred             EEEEECCC--HhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccc-cCCCHHHHH----
Confidence            56777775  44444443332 256899999999877765421            11111111122 222333322    


Q ss_pred             hcccCCCCeeEEEEcCCcc----------chHHHHHHH---HhccCCCeEEEEeccccCcc
Q 026461          140 KYSENEGSFDYAFVDADKD----------NYCNYHERL---MKLLKVGGIAVYDNTLWGGT  187 (238)
Q Consensus       140 ~~~~~~~~fD~V~~d~~~~----------~~~~~~~~~---~~~L~~gG~lv~~~~~~~g~  187 (238)
                            ..-|++|+.-+.+          ......+.+   .+.++++.++++.....+|.
T Consensus        75 ------~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGt  129 (202)
T d1mv8a2          75 ------LDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGT  129 (202)
T ss_dssp             ------HTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTH
T ss_pred             ------hhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcc
Confidence                  2468888763221          122333333   34566888899887776664

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=80.74  E-value=0.75  Score=35.90  Aligned_cols=70  Identities=13%  Similarity=0.184  Sum_probs=46.1

Q ss_pred             EEEEEcccccHHHHHHHhhC-CC-CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH---HHHHHHhcccCCCC
Q 026461           73 KTIEIGVFTGYSLLLTALTI-PE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS---VLDQLLKYSENEGS  147 (238)
Q Consensus        73 ~vLeiG~G~G~~t~~la~~~-~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~l~~~~~~~~~~~~  147 (238)
                      +||-.|. +|..+..+++.+ .. ..+|+++|..........      . ..+++++.+|..+   ..+..      ...
T Consensus         2 KILITG~-tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~------~-~~~~~~i~~Di~~~~~~~~~~------~~~   67 (342)
T d2blla1           2 RVLILGV-NGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL------N-HPHFHFVEGDISIHSEWIEYH------VKK   67 (342)
T ss_dssp             EEEEETC-SSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGT------T-CTTEEEEECCTTTCSHHHHHH------HHH
T ss_pred             EEEEECC-CcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhc------c-CCCeEEEECccCChHHHHHHH------HhC
Confidence            6888884 999998888765 21 248999998654332221      1 2579999999753   23323      246


Q ss_pred             eeEEEEcCC
Q 026461          148 FDYAFVDAD  156 (238)
Q Consensus       148 fD~V~~d~~  156 (238)
                      +|.|+.-+.
T Consensus        68 ~d~Vih~a~   76 (342)
T d2blla1          68 CDVVLPLVA   76 (342)
T ss_dssp             CSEEEECBC
T ss_pred             CCccccccc
Confidence            899987654

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.74  E-value=3  Score=31.09  Aligned_cols=62  Identities=8%  Similarity=-0.047  Sum_probs=43.2

Q ss_pred             CCEEEEEcccccHHHHHHHhhC----CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461           71 AKKTIEIGVFTGYSLLLTALTI----PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS  133 (238)
Q Consensus        71 ~~~vLeiG~G~G~~t~~la~~~----~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (238)
                      .+.+|--|++.| .+..+++.+    ..+.+|+.++.+++.++.+.+.+...+...++.++.+|..+
T Consensus         6 gKvalITGas~G-IG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~   71 (259)
T d1oaaa_           6 CAVCVLTGASRG-FGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGT   71 (259)
T ss_dssp             SEEEEESSCSSH-HHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTS
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCC
Confidence            344444465544 455555443    34679999999999999888888776655678899999764

>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulatory protein StyR, N-terminal domain
species: Pseudomonas fluorescens [TaxId: 294]

Probab=80.46  E-value=5.7  Score=25.98  Aligned_cols=75  Identities=13%  Similarity=0.087  Sum_probs=51.7

Q ss_pred             EEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccc--hHHHHHHHHhccCCC
Q 026461           97 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKVG  174 (238)
Q Consensus        97 ~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~--~~~~~~~~~~~L~~g  174 (238)
                      +|.-||-++...+..+..+...|+  .+. ...++.+.+..+.     ...||+|++|...+.  -.+.++.+...-..-
T Consensus         4 ~ILiVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~~~-----~~~~dliilD~~mp~~~G~~~~~~i~~~~~~~   75 (128)
T d1yioa2           4 TVFVVDDDMSVREGLRNLLRSAGF--EVE-TFDCASTFLEHRR-----PEQHGCLVLDMRMPGMSGIELQEQLTAISDGI   75 (128)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTTTC--EEE-EESSHHHHHHHCC-----TTSCEEEEEESCCSSSCHHHHHHHHHHTTCCC
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCC--Ccc-ccccHHHHHHHHH-----hcCCCEeehhhhcccchhHHHHHHHHhhCCCC
Confidence            899999999999999999998885  243 3446777776652     578999999975433  345566665433333


Q ss_pred             eEEEE
Q 026461          175 GIAVY  179 (238)
Q Consensus       175 G~lv~  179 (238)
                      -++++
T Consensus        76 ~ii~l   80 (128)
T d1yioa2          76 PIVFI   80 (128)
T ss_dssp             CEEEE
T ss_pred             eEEEE
Confidence            35554

>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator PleD, receiver domain
species: Caulobacter crescentus [TaxId: 155892]

Probab=80.40  E-value=4.8  Score=26.89  Aligned_cols=65  Identities=9%  Similarity=0.029  Sum_probs=47.3

Q ss_pred             CEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccch--HHHHHHHH
Q 026461           96 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY--CNYHERLM  168 (238)
Q Consensus        96 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~--~~~~~~~~  168 (238)
                      ++|..||-++...+..+..+...|+  .+ ....++.+.+..+.     ...||+|++|...+..  ...++.+.
T Consensus         2 arILiVDD~~~~~~~l~~~L~~~g~--~v-~~a~~~~eal~~~~-----~~~~dlil~D~~~p~~~G~~~~~~ir   68 (139)
T d1w25a1           2 ARILVVDDIEANVRLLEAKLTAEYY--EV-STAMDGPTALAMAA-----RDLPDIILLDVMMPGMDGFTVCRKLK   68 (139)
T ss_dssp             CEEEEECSSTTHHHHHHHHHHHTTC--EE-EEESSHHHHHHHHH-----HHCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCC--EE-EEEccchhhhhhhh-----cccceeeeeeccccCCCchHHHHHhh
Confidence            6899999999999999999999886  24 35557777666554     3589999999754443  44555554

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=80.30  E-value=4.7  Score=30.05  Aligned_cols=80  Identities=14%  Similarity=0.028  Sum_probs=52.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHH-HHcCCCCcEEEEecchhH------HHHHHHhc
Q 026461           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPII-KKAGVDHKINFIESEALS------VLDQLLKY  141 (238)
Q Consensus        70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~------~l~~~~~~  141 (238)
                      ++|++|-.|.+ +..+..+++.+. .+.+|+.++.+++..+.+.+.+ +..+  .++.++.+|..+      .+....++
T Consensus         8 ~gK~alITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (260)
T d1h5qa_           8 VNKTIIVTGGN-RGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG--VKTKAYQCDVSNTDIVTKTIQQIDAD   84 (260)
T ss_dssp             TTEEEEEETTT-SHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC--CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            56788888855 455555555542 2579999999988776665544 3444  458888888653      22333222


Q ss_pred             ccCCCCeeEEEEcC
Q 026461          142 SENEGSFDYAFVDA  155 (238)
Q Consensus       142 ~~~~~~fD~V~~d~  155 (238)
                         .+..|+++.++
T Consensus        85 ---~g~iDilVnnA   95 (260)
T d1h5qa_          85 ---LGPISGLIANA   95 (260)
T ss_dssp             ---SCSEEEEEECC
T ss_pred             ---hCCCcEecccc
Confidence               57999988764

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=80.02  E-value=5.8  Score=25.83  Aligned_cols=65  Identities=15%  Similarity=0.155  Sum_probs=40.7

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCc---------hhHHHHHHHHHHcCCCCcEEEEe
Q 026461           59 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNR---------ETYEIGLPIIKKAGVDHKINFIE  128 (238)
Q Consensus        59 ~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~---------~~~~~a~~~~~~~~~~~~v~~~~  128 (238)
                      +.-+...+....+++|+-||.  |..++.+|..+. .+.+|+.+|..+         +..+..++.++..|    ++++.
T Consensus        18 a~~i~~~~~~~~~k~vvViGg--G~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~g----v~~~~   91 (123)
T d1nhpa2          18 AIKLKQKTVDPEVNNVVVIGS--GYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANN----ITIAT   91 (123)
T ss_dssp             HHHHHHHHTCTTCCEEEEECC--SHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTT----EEEEE
T ss_pred             HHHHHHHhhccCCCEEEEECC--hHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHHHhhcCC----eEEEe
Confidence            444444554556789999977  677777776553 257899998754         33445556665544    55554


Q ss_pred             c
Q 026461          129 S  129 (238)
Q Consensus       129 ~  129 (238)
                      +
T Consensus        92 ~   92 (123)
T d1nhpa2          92 G   92 (123)
T ss_dssp             S
T ss_pred             C
Confidence            4