Citrus Sinensis ID: 026466

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MAVATATFLVLQPSFSSPFAVTPSSKLTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKVYLLHLCY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccHHcHHcccccccccccHHHHHHHHHHcHHHHHHHHHHHcccccccccccccccccccccHHHHccHHHHHHHHHHHHHHHHHHHcccHHHHcccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEcccccccccccccccccccccccccccEEEEEEEHccccccccccccccHHHHHHHHHccHHHHHHHHHHHcccccccHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHcHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccccccccccHHcccccHcccHHHccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mavatatflvlqpsfsspfavtpsskltfpnyssprrriglsTVACTYVAlsskgqgafdpeLRSVLELATDSELYELERilfgpsyfspllksftkradvdYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKnlnipcssklstEDLEAEIFLHLLQEYaseesgvfpgswenseasdaqnsLELGLSQWKVQALAAFNAGAVELKSMMLKVYLLHLCY
Flexible Loop (DISEMBL)
MAVATATFlvlqpsfsspfavtpsskLTFPNYSSPRRRIGLSTVACTYVALsskgqgafdpELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADArstlrgwrPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKVYLLHLCY
Low Complexity Region (SEG)
MAVATATFLVLQPSFSSPFAVTPSSKLTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKVYLLHLCY
Disordered region (IsUnstruct)
*****ATFLVLQP*F*************F******RRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYAS*********************LELGLSQWKVQALAAFNAGAVELKSMMLKVYLLHLC*
Disordered Region (DISOPRED)
******T*LVLQPSFSSPFAV*PS*KLTF*N*SSP***************************LRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADV*Y****QDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEY***********************************LAAFNAGAVELKSMMLKVYLLHLCY
Disordered Region (DISEMBL)
MAVATATFLVLQPSFSSPFAVTPSSKLTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKVYLLHLCY
Disordered Region (DISPRO)
*AVATATFLVLQPSFSSPFAVTPSSKLTFPNYSSPRRRIGLSTVACTYVAL**KGQGAFDPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYAS*ESGVFPGSW*NSE****QNSLELGLSQWKVQALAAFNAGAVELKSMMLKVYLLHLCY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAVATATFLVLQPSFSSPFAVTPSSKLTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKVYLLHLCY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
359495113	346	PREDICTED: uncharacterized protein LOC10	0.852	0.586	0.740	3e-83
359495111	354	PREDICTED: uncharacterized protein LOC10	0.852	0.573	0.740	4e-83
18410364	351	uncharacterized protein [Arabidopsis tha	0.928	0.629	0.621	8e-70
334183893	357	uncharacterized protein [Arabidopsis tha	0.928	0.619	0.621	1e-69
27754453	350	unknown protein [Arabidopsis thaliana]	0.848	0.577	0.651	2e-69
224125914	355	predicted protein [Populus trichocarpa]	0.815	0.546	0.700	5e-69
449439491	343	PREDICTED: uncharacterized protein LOC10	0.899	0.623	0.617	7e-69
255573521	372	conserved hypothetical protein [Ricinus	0.831	0.532	0.666	1e-67
297839209	351	hypothetical protein ARALYDRAFT_895206 [	0.928	0.629	0.608	2e-66
11120789	351	unknown protein [Arabidopsis thaliana]	0.915	0.621	0.6	6e-64

>gi|359495113|ref|XP_003634913.1| PREDICTED: uncharacterized protein LOC100243690 isoform 2 [Vitis vinifera]

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 154/208 (74%), Positives = 174/208 (83%), Gaps = 5/208 (2%)

Query: 28  TFPNY-----SSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERIL 82
           T PNY      SP  +I L  V  ++ ++S  GQGAFDPELR VLELATDSEL+ELERIL
Sbjct: 18  TKPNYPIFRSRSPSTKITLGLVFSSHSSISRNGQGAFDPELRPVLELATDSELFELERIL 77

Query: 83  FGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSY 142
           FGPSYFSPLLKS ++RADVDY MIE+DLEEREDFI+SLESRFLFLAADARSTLRGWRPSY
Sbjct: 78  FGPSYFSPLLKSISRRADVDYAMIEEDLEEREDFISSLESRFLFLAADARSTLRGWRPSY 137

Query: 143 RNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSL 202
           RNVLL VRK LN+PCSSKLSTEDLE EIFLHLLQ+Y+SEESG    SWENS+AS +  +L
Sbjct: 138 RNVLLGVRKKLNVPCSSKLSTEDLEVEIFLHLLQDYSSEESGALSKSWENSKASTSHGNL 197

Query: 203 ELGLSQWKVQALAAFNAGAVELKSMMLK 230
           E GLSQWKVQA+AA  AGA EL+S++LK
Sbjct: 198 EFGLSQWKVQAVAALGAGASELRSIILK 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495111|ref|XP_002263023.2| PREDICTED: uncharacterized protein LOC100243690 isoform 1 [Vitis vinifera] gi|296088813|emb|CBI38263.3| unnamed protein product [Vitis vinifera]

 Score =  313 bits (801), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 154/208 (74%), Positives = 174/208 (83%), Gaps = 5/208 (2%)

Query: 28  TFPNY-----SSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERIL 82
           T PNY      SP  +I L  V  ++ ++S  GQGAFDPELR VLELATDSEL+ELERIL
Sbjct: 18  TKPNYPIFRSRSPSTKITLGLVFSSHSSISRNGQGAFDPELRPVLELATDSELFELERIL 77

Query: 83  FGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSY 142
           FGPSYFSPLLKS ++RADVDY MIE+DLEEREDFI+SLESRFLFLAADARSTLRGWRPSY
Sbjct: 78  FGPSYFSPLLKSISRRADVDYAMIEEDLEEREDFISSLESRFLFLAADARSTLRGWRPSY 137

Query: 143 RNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSL 202
           RNVLL VRK LN+PCSSKLSTEDLE EIFLHLLQ+Y+SEESG    SWENS+AS +  +L
Sbjct: 138 RNVLLGVRKKLNVPCSSKLSTEDLEVEIFLHLLQDYSSEESGALSKSWENSKASTSHGNL 197

Query: 203 ELGLSQWKVQALAAFNAGAVELKSMMLK 230
           E GLSQWKVQA+AA  AGA EL+S++LK
Sbjct: 198 EFGLSQWKVQAVAALGAGASELRSIILK 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18410364|ref|NP_565065.1| uncharacterized protein [Arabidopsis thaliana] gi|21593462|gb|AAM65429.1| unknown [Arabidopsis thaliana] gi|124301178|gb|ABN04841.1| At1g73470 [Arabidopsis thaliana] gi|332197343|gb|AEE35464.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  269 bits (687), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 138/222 (62%), Positives = 165/222 (74%), Gaps = 1/222 (0%)

Query: 10  VLQPSFSSPFAVTPS-SKLTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLE 68
           V+ P    PF+   + +KL+     +  RR  L     +  A  S  +  +DPELR V E
Sbjct: 8   VVAPPHRCPFSSHLNLNKLSLQIPRTGWRRKQLGFALASTAASESPSEATYDPELRLVFE 67

Query: 69  LATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLA 128
           LATDSELYELE+ILFGPSYFSPLLKS   +   D +MI QD+E R+ FI +LESRFLFLA
Sbjct: 68  LATDSELYELEKILFGPSYFSPLLKSIPNKGGGDRLMIGQDIEVRDGFIEALESRFLFLA 127

Query: 129 ADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPG 188
           ADARSTLRGWRPSYRNVLLAVR NLNIPCSS+L TEDLEAEIFL+L+  ++SE SGVFPG
Sbjct: 128 ADARSTLRGWRPSYRNVLLAVRNNLNIPCSSQLPTEDLEAEIFLYLVDNFSSEASGVFPG 187

Query: 189 SWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLK 230
            WENSE S+A+ SLELGLS+WKV+ LAA   GA E++SM+LK
Sbjct: 188 MWENSEVSEAEGSLELGLSKWKVELLAALQVGATEVQSMILK 229

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334183893|ref|NP_001185391.1| uncharacterized protein [Arabidopsis thaliana] gi|332197345|gb|AEE35466.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 138/222 (62%), Positives = 165/222 (74%), Gaps = 1/222 (0%)

Query: 10  VLQPSFSSPFAVTPS-SKLTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLE 68
           V+ P    PF+   + +KL+     +  RR  L     +  A  S  +  +DPELR V E
Sbjct: 8   VVAPPHRCPFSSHLNLNKLSLQIPRTGWRRKQLGFALASTAASESPSEATYDPELRLVFE 67

Query: 69  LATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLA 128
           LATDSELYELE+ILFGPSYFSPLLKS   +   D +MI QD+E R+ FI +LESRFLFLA
Sbjct: 68  LATDSELYELEKILFGPSYFSPLLKSIPNKGGGDRLMIGQDIEVRDGFIEALESRFLFLA 127

Query: 129 ADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPG 188
           ADARSTLRGWRPSYRNVLLAVR NLNIPCSS+L TEDLEAEIFL+L+  ++SE SGVFPG
Sbjct: 128 ADARSTLRGWRPSYRNVLLAVRNNLNIPCSSQLPTEDLEAEIFLYLVDNFSSEASGVFPG 187

Query: 189 SWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLK 230
            WENSE S+A+ SLELGLS+WKV+ LAA   GA E++SM+LK
Sbjct: 188 MWENSEVSEAEGSLELGLSKWKVELLAALQVGATEVQSMILK 229

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27754453|gb|AAO22674.1| unknown protein [Arabidopsis thaliana]

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 133/204 (65%), Positives = 158/204 (77%), Gaps = 2/204 (0%)

Query: 27  LTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERILFGPS 86
           L  P     R+++G +  +    A  S  +  +DPELR V ELATDSELYELE+ILFGPS
Sbjct: 27  LKIPRTGWRRKQLGFALASTA--ASESPSEATYDPELRLVFELATDSELYELEKILFGPS 84

Query: 87  YFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVL 146
           YFSPLLKS   +   D +MI QD+E R+ FI +LESRFLFLAADARSTLRGWRPSYRNVL
Sbjct: 85  YFSPLLKSIPNKGGGDRLMIGQDIEVRDGFIEALESRFLFLAADARSTLRGWRPSYRNVL 144

Query: 147 LAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGL 206
           LAVR NLNIPCSS+L TEDLEAEIFL+L+  ++SE SGVFPG WENSE S+A+ SLELGL
Sbjct: 145 LAVRNNLNIPCSSQLPTEDLEAEIFLYLVDNFSSEASGVFPGMWENSEVSEAEGSLELGL 204

Query: 207 SQWKVQALAAFNAGAVELKSMMLK 230
           S+WKV+ LAA   GA E++SM+LK
Sbjct: 205 SKWKVELLAALQVGATEVQSMILK 228

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125914|ref|XP_002329748.1| predicted protein [Populus trichocarpa] gi|222870656|gb|EEF07787.1| predicted protein [Populus trichocarpa]

 Score =  266 bits (681), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 138/197 (70%), Positives = 162/197 (82%), Gaps = 3/197 (1%)

Query: 37  RRIGLSTVACT-YVALSSKGQ-GAFDPELRSVLELATDSELYELERILFGPSYFSPLLKS 94
           + I  S + C+ + + S K Q G FD +LRSVLELATDSELYELE ILFGPS+FSPLLKS
Sbjct: 35  KNILYSPLRCSSHASFSPKSQDGPFDRDLRSVLELATDSELYELENILFGPSHFSPLLKS 94

Query: 95  F-TKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNL 153
             +KRA++DY M++QD+EERED I+ LESRF FLAADARSTLRGWRP+YRNVLL VRK L
Sbjct: 95  IASKRAEIDYAMMDQDMEEREDMISCLESRFFFLAADARSTLRGWRPTYRNVLLTVRKKL 154

Query: 154 NIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQA 213
           +I CSSKLSTEDLEAEIFLHLL+EYASE+SG FPG WE S+ SD Q SL +GLSQ KVQA
Sbjct: 155 SIGCSSKLSTEDLEAEIFLHLLEEYASEQSGTFPGLWELSKTSDDQGSLGIGLSQEKVQA 214

Query: 214 LAAFNAGAVELKSMMLK 230
           LAA   GA +L+S++LK
Sbjct: 215 LAAQKLGAADLQSIILK 231

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439491|ref|XP_004137519.1| PREDICTED: uncharacterized protein LOC101204111 [Cucumis sativus] gi|449517717|ref|XP_004165891.1| PREDICTED: uncharacterized protein LOC101226231 [Cucumis sativus]

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 142/230 (61%), Positives = 170/230 (73%), Gaps = 16/230 (6%)

Query: 1   MAVATATFLVLQPSFSSPFAVTPSSKLTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFD 60
           MA A A    LQ +F SP A   S K+ +P +SS  RR G+  V C   +     QG FD
Sbjct: 1   MATALA---ALQFAFLSPAA---SKKIAYPFFSSSGRRNGVQFVGCVNASNPRNAQGGFD 54

Query: 61  PELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASL 120
           P+LRSVLELAT+SELYELE+ILFGPSYFSPL+KS T R   DY MIE+DLEER+ FI+SL
Sbjct: 55  PDLRSVLELATNSELYELEQILFGPSYFSPLMKSITNRGQPDYAMIEEDLEERDGFISSL 114

Query: 121 ESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYAS 180
           ESRFLFLAADARSTLRGWRPSYR+VLL VRK LN+ CS+KLS+EDLEAEIFLHLLQEYAS
Sbjct: 115 ESRFLFLAADARSTLRGWRPSYRDVLLTVRKKLNVLCSTKLSSEDLEAEIFLHLLQEYAS 174

Query: 181 EESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLK 230
           EES            ++ + +L+LGL QWKVQ  AA + GA +L+S++L+
Sbjct: 175 EES---------VRQANLEGTLQLGLDQWKVQTSAATD-GASDLQSLILR 214

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573521|ref|XP_002527685.1| conserved hypothetical protein [Ricinus communis] gi|223532916|gb|EEF34684.1| conserved hypothetical protein [Ricinus communis]

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 136/204 (66%), Positives = 154/204 (75%), Gaps = 6/204 (2%)

Query: 28  TFPNYSSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERILFGPSY 87
            F   SS +++  L  + C++ A+S    G  D ELRSVLELATDSELYELERILFGPSY
Sbjct: 51  VFQILSSDKKK-SLGIIRCSHAAVS----GTLDRELRSVLELATDSELYELERILFGPSY 105

Query: 88  FSPLLKSFTKRA-DVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVL 146
           FSPLLKS T    DV+Y   E D+ ERE FIA+LESRFL+LAADARSTLRGWRPSYRNVL
Sbjct: 106 FSPLLKSITGNGVDVEYSTFEDDMAEREAFIAALESRFLYLAADARSTLRGWRPSYRNVL 165

Query: 147 LAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGL 206
           LAVRK LNIPCS KL TEDLEAEIFLHLLQ++ SEESG  PG WE SE    Q SLE+GL
Sbjct: 166 LAVRKKLNIPCSRKLPTEDLEAEIFLHLLQDHPSEESGTVPGLWEFSEVPSDQGSLEIGL 225

Query: 207 SQWKVQALAAFNAGAVELKSMMLK 230
            QW  QA+AA   G  EL+S++LK
Sbjct: 226 RQWNGQAIAAIKLGLAELQSVILK 249

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839209|ref|XP_002887486.1| hypothetical protein ARALYDRAFT_895206 [Arabidopsis lyrata subsp. lyrata] gi|297333327|gb|EFH63745.1| hypothetical protein ARALYDRAFT_895206 [Arabidopsis lyrata subsp. lyrata]

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 135/222 (60%), Positives = 165/222 (74%), Gaps = 1/222 (0%)

Query: 10  VLQPSFSSPFAVTPS-SKLTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLE 68
           V+ P    PF+   S +KL+     +  RR  L     +  A  S  +  +DPELR V E
Sbjct: 8   VVAPPHRCPFSRHLSLTKLSLQIPRTGWRRKQLGFALASAAASESPSEATYDPELRLVFE 67

Query: 69  LATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLA 128
           LATDSELYELE+ILFGPS FSPLLKS   +   D +MI QD++ R+ +I +LESRFLFLA
Sbjct: 68  LATDSELYELEKILFGPSSFSPLLKSIPNKGGRDRLMIGQDIQVRDGYIEALESRFLFLA 127

Query: 129 ADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPG 188
           ADARSTLRGWRPSY+NVLLAVR NLNIPCSS+L TEDLEAEIFL+L+  ++SE SGVFPG
Sbjct: 128 ADARSTLRGWRPSYKNVLLAVRNNLNIPCSSQLPTEDLEAEIFLYLVDNFSSEASGVFPG 187

Query: 189 SWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLK 230
            WENSE S+A+ SLELGLS+WKV+ LAA + GA E++SM+LK
Sbjct: 188 LWENSEVSEAKGSLELGLSKWKVELLAALHVGATEVQSMILK 229

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11120789|gb|AAG30969.1|AC012396_5 unknown protein [Arabidopsis thaliana]

 Score =  249 bits (637), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 135/225 (60%), Positives = 161/225 (71%), Gaps = 7/225 (3%)

Query: 10  VLQPSFSSPFAVTPS-SKLTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLE 68
           V+ P    PF+   + +KL+     +  RR  L     +  A  S  +  +DPELR V E
Sbjct: 8   VVAPPHRCPFSSHLNLNKLSLQIPRTGWRRKQLGFALASTAASESPSEATYDPELRLVFE 67

Query: 69  LATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLA 128
           LATDSELYELE+ILFGPSYFSPLLKS   +   D +MI QD+E R+ FI +LESRFLFLA
Sbjct: 68  LATDSELYELEKILFGPSYFSPLLKSIPNKGGGDRLMIGQDIEVRDGFIEALESRFLFLA 127

Query: 129 ADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQE---YASEESGV 185
           ADARSTL   RPSYRNVLLAVR NLNIPCSS+L TEDLEAEIFL+L+     Y+ E SGV
Sbjct: 128 ADARSTL---RPSYRNVLLAVRNNLNIPCSSQLPTEDLEAEIFLYLVDNFSRYSGEASGV 184

Query: 186 FPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLK 230
           FPG WENSE S+A+ SLELGLS+WKV+ LAA   GA E++SM+LK
Sbjct: 185 FPGMWENSEVSEAEGSLELGLSKWKVELLAALQVGATEVQSMILK 229

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00006040001 SubName- Full=Chromosome undetermined scaffold_163, whole genome shotgun sequence; (312 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	238
PRK10236	237	hypothetical protein; Provisional	99.98
COG4735	211	Uncharacterized protein conserved in bacteria [Fun	99.38
COG4735	211	Uncharacterized protein conserved in bacteria [Fun	97.23
PF13099	35	DUF3944: Domain of unknown function (DUF3944)	95.34
PF03250	147	Tropomodulin: Tropomodulin; InterPro: IPR004934 Ac	84.94

>PRK10236 hypothetical protein; Provisional

Probab=99.98  E-value=7.3e-33  Score=245.41  Aligned_cols=110  Identities=22%  Similarity=0.326  Sum_probs=103.3

Q ss_pred             CcHHHHHHHHhhChHHHHHHHHHhcc-----cCCCCccchhcc-cc---CCcchHHHHhhhHHHHHHHHHHHHHHhhhcc
Q 026466           59 FDPELRSVLELATDSELYELERILFG-----PSYFSPLLKSFT-KR---ADVDYVMIEQDLEEREDFIASLESRFLFLAA  129 (238)
Q Consensus        59 ~~~ELr~~LeLATdEEL~~Lt~ILf~-----~r~fsPLlkS~~-k~---~~~Dy~~i~~~~~~R~~~~~~IE~RFrfLAA  129 (238)
                      .|++| +||..|++|||.+|++||++     .|+++.|+++.. |+   |++||.          +||+.||+|||||||
T Consensus         7 ~D~DL-~fL~~cs~edL~~Lv~~Lt~d~dG~~R~te~lt~~~~yk~~~~~~~~~~----------~yw~~Ia~elq~fGg   75 (237)
T PRK10236          7 NDSDL-DFLQHCSEEQLANFARLLTHNEKGKTRLSSVLMRNELFKSMEGHPEQHR----------RNWQLIAGELQHFGG   75 (237)
T ss_pred             cCccH-HHHHhCCHHHHHHHHHHHhcCCCCCEeehhhhcccHHHHhhcccchhHH----------HHHHHHHHHHHHhcc
Confidence            47777 59999999999999999999     788999999965 66   999999          999999999999999


Q ss_pred             cc-cchhcCCCchHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhhhc
Q 026466          130 DA-RSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYA  179 (238)
Q Consensus       130 D~-~TvLRG~~vsYReVLl~VC~kLKV~ys~klsT~dLEaEIFLhLL~~~s  179 (238)
                      || +|+|||+||+|||||+|||+||||||++++||++||+|||+|+|++.-
T Consensus        76 nt~~n~lRG~Gv~YreIL~DVc~~LKV~y~~~~st~~iE~~il~kll~~a~  126 (237)
T PRK10236         76 DSIANKLRGHGKLYRAILLDVSKRLKLKADKEMSTFEIEQQLLEQFLRNTW  126 (237)
T ss_pred             hHHHHHHhcCCccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            99 779999999999999999999999999999999999999999998764

>COG4735 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.38  E-value=4.1e-14  Score=124.53  Aligned_cols=71  Identities=15%  Similarity=0.351  Sum_probs=67.6

Q ss_pred             cCCc-chHHHHhhhHHHHHHHHHHHHHHhhhcccc-cchhcCCCchHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHH
Q 026466           98 RADV-DYVMIEQDLEEREDFIASLESRFLFLAADA-RSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLL  175 (238)
Q Consensus        98 ~~~~-Dy~~i~~~~~~R~~~~~~IE~RFrfLAAD~-~TvLRG~~vsYReVLl~VC~kLKV~ys~klsT~dLEaEIFLhLL  175 (238)
                      |++. ||.          +||+.|.+++|++++|+ ++.|||.|+.||+||+|+|||||++|+++++|.+||+.++++|+
T Consensus        14 r~g~~~~~----------ky~k~ia~elq~~gg~s~anflr~~G~lyk~il~d~~~~Lk~k~~k~~~tt~Iee~ll~~il   83 (211)
T COG4735          14 REGLIQVC----------KYLKRIAEELQTTGGLSAANFLRDLGQLYKKILCDEKDKLKVKVQKELGTTEIEEPLLLQIL   83 (211)
T ss_pred             HhhHHHHH----------HHHHhhHHHHHHhccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhccccccchhHHHHH
Confidence            6666 888          99999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             hhh
Q 026466          176 QEY  178 (238)
Q Consensus       176 ~~~  178 (238)
                      .+-
T Consensus        84 ~~~   86 (211)
T COG4735          84 RNP   86 (211)
T ss_pred             HhH
Confidence            654

>COG4735 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.23  E-value=8.5e-05  Score=66.27  Aligned_cols=47  Identities=30%  Similarity=0.285  Sum_probs=43.7

Q ss_pred             cchhcCC--CchHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhhh
Q 026466          132 RSTLRGW--RPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEY  178 (238)
Q Consensus       132 ~TvLRG~--~vsYReVLl~VC~kLKV~ys~klsT~dLEaEIFLhLL~~~  178 (238)
                      +|++||+  +++||+-++||||+++++|...+.|-++|.++|+|.+++-
T Consensus         1 lt~~l~~~~~~k~r~g~~~~~ky~k~ia~elq~~gg~s~anflr~~G~l   49 (211)
T COG4735           1 LTVLLGRSEQFKYREGLIQVCKYLKRIAEELQTTGGLSAANFLRDLGQL   49 (211)
T ss_pred             CchhhccchhhHHHhhHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHH
Confidence            4788996  9999999999999999999999999999999999999653

>PF13099 DUF3944: Domain of unknown function (DUF3944)

Probab=95.34  E-value=0.015  Score=39.34  Aligned_cols=21  Identities=24%  Similarity=0.275  Sum_probs=19.8

Q ss_pred             HHHHHhhChHHHHHHHHHhcc
Q 026466           64 RSVLELATDSELYELERILFG   84 (238)
Q Consensus        64 r~~LeLATdEEL~~Lt~ILf~   84 (238)
                      -+||..|++|+|++|++||++
T Consensus         7 LeFL~~cs~edL~~L~~~Lt~   27 (35)
T PF13099_consen    7 LEFLAECSNEDLKDLVDILTH   27 (35)
T ss_pred             hHHHHHCCHHHHHHHHHHHhc
Confidence            379999999999999999997

>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end

Probab=84.94  E-value=1.3  Score=38.07  Aligned_cols=31  Identities=45%  Similarity=0.549  Sum_probs=27.0

Q ss_pred             cCCCCCCcHHHHHHHHhhChHHHHHHHHHhc
Q 026466           53 SKGQGAFDPELRSVLELATDSELYELERILF   83 (238)
Q Consensus        53 ~~~~~~~~~ELr~~LeLATdEEL~~Lt~ILf   83 (238)
                      ....-..++||.++|.-||++||.+|+.||-
T Consensus       109 ~ee~v~ldpeleeaL~~Atd~El~dlAaILG  139 (147)
T PF03250_consen  109 KEEQVTLDPELEEALSNATDAELCDLAAILG  139 (147)
T ss_pred             cccccccCHHHHHHHhcCcHHHHHHHHHHHh
Confidence            3345577899999999999999999999995

To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	238
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 47/300 (15%), Positives = 88/300 (29%), Gaps = 84/300 (28%)

Query: 1   MAVATATFLVLQPSFSSPFAVTPSSKLTFPNYSSPRRRIGLSTVACTYVA--LSSKGQGA 58
           +A+       +Q      F +     L   N +SP   + +       +    +S+   +
Sbjct: 166 VALDVCLSYKVQCKM--DFKI---FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 59  FDPELRSVLELATDSELYELERILFGPSYFSPLL-----------KSF---------TKR 98
            + +LR        S   EL R+L    Y + LL            +F         T+ 
Sbjct: 221 SNIKLR------IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274

Query: 99  ADV-DYV----MIEQDLEEREDFIASLESRFLF----------LAADARST--------- 134
             V D++         L+     +   E + L           L  +  +T         
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334

Query: 135 --LRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGS--- 189
             +R    ++ N        L      + S   LE   +  +    +     VFP S   
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTT--IIESSLNVLEPAEYRKMFDRLS-----VFPPSAHI 387

Query: 190 --------WENSEASDAQNSLE------LGLSQWKVQALAAFNAGAVELKSMMLKVYLLH 235
                   W +   SD    +       L + +   ++  +  +  +ELK  +   Y LH
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSL-VEKQPKESTISIPSIYLELKVKLENEYALH 446

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	238
2jx3_A	131	Protein DEK; alpha helix, SAF/SAP motif, DNA bindi	86.17

>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens}

Probab=86.17  E-value=2  Score=34.53  Aligned_cols=98  Identities=16%  Similarity=0.178  Sum_probs=61.7

Q ss_pred             cHHHHHHHHhhChHHHHHHHHHhcccCCCCc-cchhccccCCcchHHHHhhhHHHHHHHHHHHHHHhhhcccccchhcCC
Q 026466           60 DPELRSVLELATDSELYELERILFGPSYFSP-LLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGW  138 (238)
Q Consensus        60 ~~ELr~~LeLATdEEL~~Lt~ILf~~r~fsP-LlkS~~k~~~~Dy~~i~~~~~~R~~~~~~IE~RFrfLAAD~~TvLRG~  138 (238)
                      .|.+...+..++-++|..|..|||++.=-.. +-+++..=.|..+   +.+++++++-.+.|+.                
T Consensus        14 Ip~V~~~i~k~k~d~Lk~LH~ilfgr~Gk~~~~KknI~~FsGF~~---~~~~~~~~k~~e~l~K----------------   74 (131)
T 2jx3_A           14 IERIHFFLSKKKTDELRNLHKLLYNRPGTVSSLKKNVGQFSGFPF---EKGSVQYKKKEEMLKK----------------   74 (131)
T ss_dssp             CHHHHHHHHTCCHHHHHHHHHHTSSSCCCSHHHHHHHHTSSCSSC---CCSSHHHHHHHHHHHH----------------
T ss_pred             cHHHHHHHcccCHHHHHHHHHHHcCCCChHhHHHHHHHhcCCCCC---CccHHHHHHHHHHHHc----------------
Confidence            5677788888888999999999999642222 1222221111211   1233444454444442                


Q ss_pred             CchHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhhhcc
Q 026466          139 RPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYAS  180 (238)
Q Consensus       139 ~vsYReVLl~VC~kLKV~ys~klsT~dLEaEIFLhLL~~~ss  180 (238)
                        ...+-|.++|+=|+|+++.  +.++|-+.|+-.|+.=.++
T Consensus        75 --~~~~~L~~~c~iL~l~~~g--~keelv~ril~FL~~P~~~  112 (131)
T 2jx3_A           75 --FRNAMLKSICEVLDLERSG--VNSELVKRILNFLMHPKPS  112 (131)
T ss_dssp             --HHHHHHHHHHHTTTCCSCS--CHHHHHHHHHHTTTSCC--
T ss_pred             --cCHHHHHHHHHHHCCCCCC--cHHHHHHHHHHHHhCcccc
Confidence              1357899999999999984  5788888888777665553

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00