Citrus Sinensis ID: 026474

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MSLKLFATSLTSILLVVLPDLSCRFYMRDGLMTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSDRQS
Secondary Structure (PSIPRED)
ccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccccHHHHHHHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEcccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccEEEcHHHHHHHHHHHHHHHHHHHHcccHHcccccHHHHHHHHHHHccccccccEcccHHHHHHcccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MSLKLFATSLTSILLVVLpdlscrfymrdglmtssvhdmsdnsdadeqrkhpesqlqsstpamgmshpsittpnvqyathqvgaghamapaaypypdpyyrsifapydaqpyppqpyggqpmvHLQLMGIqqagvplptdaveepvfvnAKQYHGILRRRQSRAKAESENKVlksrkpylhesRHLHALRRArgcggrflnskknenqqkgmasddksqsnlnlnsdkneiassdrqs
Flexible Loop (DISEMBL)
MSLKLFATSLTSILLVVLPDLSCRFYMRDGLMTSSVHDMSDNSDADEQRKHpesqlqsstpamGMSHPSITTPNVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKqyhgilrrrqsrakaesenkvlksrkpylhesrhlHALRRARGCGGRFLNSKknenqqkgmasddksqsnlnlnsdkneiassdrqs
Low Complexity Region (SEG)
MSLKLFATSLTSILLVVLPDLSCRFYMRDGLMTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHamapaaypypdpyyRSIFapydaqpyppqpyggqpMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSDRQS
Disordered region (IsUnstruct)
****LFATSLTSILLVVLPDLSCRFYMRDGLM******************************************VQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGIL*********************************************************************************
Disordered Region (DISOPRED)
*******TSLTSILLVVLPDL********************************************************************************S****************************************EEPVFVNAKQYHGILRRRQS****************************************************************************
Disordered Region (DISEMBL)
MSLKLFATSLTSILLVVLPDLSCRFYMRDGLMTSSVH****************************SHPSITTPNVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHG*****************LKSRKPYLHESRHLHALRRARGCGGRFLNSKKN****************LNLNSDKN*********
Disordered Region (DISPRO)
*SLKLFATSLTSILLVVLPD*****************************************************NVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLN*************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSLKLFATSLTSILLVVLPDLSCRFYMRDGLMTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSDRQS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	238	2.2.26 [Sep-21-2011]
Q84JP1	190	Nuclear transcription fac	yes	no	0.781	0.978	0.586	2e-58
Q8VY64	198	Nuclear transcription fac	no	no	0.789	0.949	0.531	1e-52
Q945M9	303	Nuclear transcription fac	no	no	0.743	0.584	0.399	2e-30
Q93ZH2	340	Nuclear transcription fac	no	no	0.567	0.397	0.450	3e-28
Q9SYH4	308	Nuclear transcription fac	no	no	0.386	0.298	0.623	3e-28
Q9LXV5	272	Nuclear transcription fac	no	no	0.588	0.514	0.435	5e-27
Q9LNP6	328	Nuclear transcription fac	no	no	0.432	0.314	0.521	2e-26
Q9LVJ7	308	Nuclear transcription fac	no	no	0.411	0.318	0.57	8e-26
Q8LFU0	269	Nuclear transcription fac	no	no	0.592	0.524	0.378	1e-20
Q54S29	517	Nuclear transcription fac	yes	no	0.256	0.117	0.704	3e-19

>sp|Q84JP1|NFYA7_ARATH Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1

 Score =  225 bits (574), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 119/203 (58%), Positives = 152/203 (74%), Gaps = 17/203 (8%)

Query: 32  MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHAMAPA 91
           MTSS+H++SDN  + E+++  +S  Q   P+   ++ SI T ++ Y+    G  ++MAP 
Sbjct: 1   MTSSIHELSDNIGSHEKQEQRDSHFQPPIPS-ARNYESIVT-SLVYS--DPGTTNSMAPG 56

Query: 92  AYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAK 151
            YPYPDPYYRSIFAP      PPQPY G   VHLQLMG+QQ GVPLP+DAVEEPVFVNAK
Sbjct: 57  QYPYPDPYYRSIFAP------PPQPYTG---VHLQLMGVQQQGVPLPSDAVEEPVFVNAK 107

Query: 152 QYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQKG 211
           QYHGILRRRQSRA+ ES+NKV+KSRKPYLHESRHLHA+RR RGCGGRFLN+KK +   + 
Sbjct: 108 QYHGILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNAKKEDEHHED 167

Query: 212 MASDDKSQSNLNLNSDKNEIASS 234
            + ++KS    NL++ K+ +A+S
Sbjct: 168 SSHEEKS----NLSAGKSAMAAS 186

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY64|NFYA4_ARATH Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana GN=NFYA4 PE=2 SV=1

 Score =  206 bits (523), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 110/207 (53%), Positives = 147/207 (71%), Gaps = 19/207 (9%)

Query: 32  MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHAMAPA 91
           MTSSVH++SDN+++  +++ P+SQ +   P+ G S  SI T +V            MA  
Sbjct: 1   MTSSVHELSDNNESHAKKERPDSQTRPQVPS-GRSSESIDTNSV--------YSEPMAHG 51

Query: 92  AYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAK 151
            YPYPDPYYRS+FA    Q Y P PY   P V LQLMG+QQ GVPL  DAVEEPVFVNAK
Sbjct: 52  LYPYPDPYYRSVFA---QQAYLPHPY---PGVQLQLMGMQQPGVPLQCDAVEEPVFVNAK 105

Query: 152 QYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKK----NEN 207
           QYHGILRRRQSRAK E+ N+ +K++KPY+HESRHLHA+RR RGCGGRFLN+KK    ++ 
Sbjct: 106 QYHGILRRRQSRAKLEARNRAIKAKKPYMHESRHLHAIRRPRGCGGRFLNAKKENGDHKE 165

Query: 208 QQKGMASDDKSQSNLNLNSDKNEIASS 234
           +++  + ++ S+++ +L S+K  +A+S
Sbjct: 166 EEEATSDENTSEASSSLRSEKLAMATS 192

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q945M9|NFYA9_ARATH Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2 SV=1

 Score =  132 bits (332), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/213 (39%), Positives = 113/213 (53%), Gaps = 36/213 (16%)

Query: 28  RDGLMTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHA 87
           ++  +T+S     D SD +++  H            G++ P    P+ Q   H VG    
Sbjct: 79  KESQVTTSPQSAGDYSDKNQESLH-----------HGITQP---PPHPQLVGHTVGWA-- 122

Query: 88  MAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVF 147
              ++ PY DPYY  +   Y   P    PYGG P   +          PLP +  +EPVF
Sbjct: 123 ---SSNPYQDPYYAGVMGAYGHHPLGFVPYGGMPHSRM----------PLPPEMAQEPVF 169

Query: 148 VNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNEN 207
           VNAKQY  ILRRRQ+RAKAE E K++KSRKPYLHESRH HA+RR RG GGRF  +KK   
Sbjct: 170 VNAKQYQAILRRRQARAKAELEKKLIKSRKPYLHESRHQHAMRRPRGTGGRF--AKKTNT 227

Query: 208 QQKGMASDDKS-----QSNLNLNSDKNEIASSD 235
           +     +++KS     QS  + NSD+ E  + D
Sbjct: 228 EASKRKAEEKSNGHVTQSPSSSNSDQGEAWNGD 260

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93ZH2|NFYA3_ARATH Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana GN=NFYA3 PE=2 SV=2

 Score =  125 bits (314), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/151 (45%), Positives = 95/151 (62%), Gaps = 16/151 (10%)

Query: 73  PNVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQ 132
           PN+ +A        A A  ++ Y DP+Y  + A      Y PQ     P  + Q++ +  
Sbjct: 122 PNIHFAP-------AQANFSFHYADPHYGGLLAA----TYLPQA----PTCNPQMVSMIP 166

Query: 133 AGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRR 191
             VPLP +  E +PVFVNAKQYH I+RRRQ RAK E++NK++++RKPYLHESRH+HAL+R
Sbjct: 167 GRVPLPAELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKPYLHESRHVHALKR 226

Query: 192 ARGCGGRFLNSKKNENQQKGMASDDKSQSNL 222
            RG GGRFLN+KK   + +  A+ ++ Q  L
Sbjct: 227 PRGSGGRFLNTKKLLQESEQAAAREQEQDKL 257

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYH4|NFYA5_ARATH Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana GN=NFYA5 PE=2 SV=1

 Score =  125 bits (314), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 72/93 (77%), Gaps = 1/93 (1%)

Query: 124 HLQLMGIQQAGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHE 182
           HL++MG+  + VPLP    E EP+FVNAKQYH ILRRR+ RAK E++NK++K RKPYLHE
Sbjct: 157 HLEMMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKCRKPYLHE 216

Query: 183 SRHLHALRRARGCGGRFLNSKKNENQQKGMASD 215
           SRHLHAL+RARG GGRFLN+KK +     + S 
Sbjct: 217 SRHLHALKRARGSGGRFLNTKKLQESSNSLCSS 249

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXV5|NFYA1_ARATH Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1

 Score =  121 bits (303), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 87/156 (55%), Gaps = 16/156 (10%)

Query: 85  GHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEE 144
           GH +A    PY DPYY  +   Y  Q    +PY          +G+ +    LP D  +E
Sbjct: 123 GHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPY----------LGMPRERTALPLDMAQE 172

Query: 145 PVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKK 204
           PV+VNAKQY GILRRR++RAKAE E KV++ RKPYLHESRH HA+RRAR  GGRF    +
Sbjct: 173 PVYVNAKQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRFAKKSE 232

Query: 205 NENQQKGMASDDKSQSNLN------LNSDKNEIASS 234
            E  +     D +  S  N      + +D NE  +S
Sbjct: 233 VEAGEDAGGRDRERGSATNSSGSEQVETDSNETLNS 268

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LNP6|NFYA8_ARATH Nuclear transcription factor Y subunit A-8 OS=Arabidopsis thaliana GN=NFYA8 PE=2 SV=2

 Score =  119 bits (297), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/117 (52%), Positives = 77/117 (65%), Gaps = 14/117 (11%)

Query: 89  APAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVE-EPVF 147
           A  ++ Y DP++  +        Y PQ     P         Q   VPLP D +E EPVF
Sbjct: 129 ANFSFHYADPHFGGLMPA----AYLPQATIWNP---------QMTRVPLPFDLIENEPVF 175

Query: 148 VNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKK 204
           VNAKQ+H I+RRRQ RAK E++NK++K+RKPYLHESRH+HAL+R RG GGRFLN+KK
Sbjct: 176 VNAKQFHAIMRRRQQRAKLEAQNKLIKARKPYLHESRHVHALKRPRGSGGRFLNTKK 232

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVJ7|NFYA6_ARATH Nuclear transcription factor Y subunit A-6 OS=Arabidopsis thaliana GN=NFYA6 PE=2 SV=1

 Score =  117 bits (292), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 57/100 (57%), Positives = 74/100 (74%), Gaps = 2/100 (2%)

Query: 116 PYGGQPMV-HLQLMGIQQAGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVL 173
           PY  Q  V H Q+ G+  + +PLP +  E EP+FVNAKQY  ILRRR+ RAK E++NK++
Sbjct: 141 PYASQHTVQHPQIRGLVPSRMPLPHNIPENEPIFVNAKQYQAILRRRERRAKLEAQNKLI 200

Query: 174 KSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQKGMA 213
           K RKPYLHESRHLHAL+R RG GGRFLN+KK++     ++
Sbjct: 201 KVRKPYLHESRHLHALKRVRGSGGRFLNTKKHQESNSSLS 240

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LFU0|NFYAA_ARATH Nuclear transcription factor Y subunit A-10 OS=Arabidopsis thaliana GN=NFYA10 PE=2 SV=2

 Score =  100 bits (248), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 92/164 (56%), Gaps = 23/164 (14%)

Query: 75  VQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAG 134
           +Q A  + G    M    +P+ + YY  + A      Y  Q   G+ M+ L+ M  ++ G
Sbjct: 82  MQSACFEFGFAQPMMYTKHPHVEQYYGVVSA------YGSQRSSGRVMIPLK-METEEDG 134

Query: 135 VPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARG 194
                      ++VN+KQYHGI+RRRQSRAKAE   K+ + RKPY+H SRHLHA+RR RG
Sbjct: 135 T----------IYVNSKQYHGIIRRRQSRAKAE---KLSRCRKPYMHHSRHLHAMRRPRG 181

Query: 195 CGGRFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSDRQS 238
            GGRFLN+K  +  ++   S+ +S    +    +NE  +S R++
Sbjct: 182 SGGRFLNTKTADAAKQSKPSNSQSSEVFH---PENETINSSREA 222

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54S29|NFYA_DICDI Nuclear transcription factor Y subunit alpha OS=Dictyostelium discoideum GN=nfyA PE=3 SV=1

 Score = 95.5 bits (236), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/61 (70%), Positives = 52/61 (85%)

Query: 140 DAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRF 199
           + VEEP++VNAKQY+ IL+RR +RAK ESENK+ K+RK Y HESRH HA+RR RGCGGRF
Sbjct: 225 EIVEEPLYVNAKQYNRILKRRAARAKLESENKLPKTRKAYQHESRHQHAIRRQRGCGGRF 284

Query: 200 L 200
           L
Sbjct: 285 L 285

Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
224113655	208	predicted protein [Populus trichocarpa]	0.869	0.995	0.812	2e-94
225444037	208	PREDICTED: nuclear transcription factor	0.869	0.995	0.826	2e-94
255564393	213	Nuclear transcription factor Y subunit A	0.869	0.971	0.774	1e-83
449433674	202	PREDICTED: nuclear transcription factor	0.844	0.995	0.794	4e-80
449490734	201	PREDICTED: nuclear transcription factor	0.819	0.970	0.787	1e-76
356555881	205	PREDICTED: nuclear transcription factor	0.857	0.995	0.769	1e-76
224056517	205	predicted protein [Populus trichocarpa]	0.802	0.931	0.790	1e-76
255638418	206	unknown [Glycine max]	0.848	0.980	0.706	2e-76
356533053	219	PREDICTED: nuclear transcription factor	0.903	0.981	0.718	3e-76
356533051	204	PREDICTED: nuclear transcription factor	0.848	0.990	0.752	2e-75

>gi|224113655|ref|XP_002332527.1| predicted protein [Populus trichocarpa] gi|222832639|gb|EEE71116.1| predicted protein [Populus trichocarpa]

 Score =  351 bits (900), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 169/208 (81%), Positives = 188/208 (90%), Gaps = 1/208 (0%)

Query: 32  MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHAMAPA 91
           MTSSVHD+SDNS+A EQ+KH E Q+Q+S+PA  ++HP I+ PN QYAT Q+GAGHAMAPA
Sbjct: 1   MTSSVHDLSDNSEAGEQQKHSEPQVQTSSPANALAHPGISPPNFQYATPQLGAGHAMAPA 60

Query: 92  AYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAK 151
           AYPYPDPYYRSIFAP DAQPY PQPYG QPMVHLQLMGIQQAGVPLP+DAVEEPVFVNAK
Sbjct: 61  AYPYPDPYYRSIFAPCDAQPYAPQPYGAQPMVHLQLMGIQQAGVPLPSDAVEEPVFVNAK 120

Query: 152 QYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQK- 210
           QYHGILRRRQSRAKAESENK +KSRKPYLHESRH HAL+RARGCGGRFLNSKK ENQQ+ 
Sbjct: 121 QYHGILRRRQSRAKAESENKAIKSRKPYLHESRHQHALKRARGCGGRFLNSKKKENQQQN 180

Query: 211 GMASDDKSQSNLNLNSDKNEIASSDRQS 238
           GMA  DKSQSN+NLN++KN+IAS D +S
Sbjct: 181 GMAPGDKSQSNVNLNANKNDIASLDDKS 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444037|ref|XP_002282043.1| PREDICTED: nuclear transcription factor Y subunit A-7 isoform 1 [Vitis vinifera] gi|297740816|emb|CBI30998.3| unnamed protein product [Vitis vinifera]

 Score =  351 bits (900), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 172/208 (82%), Positives = 186/208 (89%), Gaps = 1/208 (0%)

Query: 32  MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATH-QVGAGHAMAP 90
           MTSSVHD+SDNS+ADE +KH E Q+QSS+PA G SHP     N+ YAT  Q+GAGHAMA 
Sbjct: 1   MTSSVHDLSDNSEADEPQKHSELQVQSSSPAAGASHPGSAAANIPYATPPQLGAGHAMAQ 60

Query: 91  AAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNA 150
           AAYPYPDPYYRSIFAPYDAQPYP Q Y GQPMVHLQLMGIQQAGVPLP+DAVEEPVFVNA
Sbjct: 61  AAYPYPDPYYRSIFAPYDAQPYPAQHYSGQPMVHLQLMGIQQAGVPLPSDAVEEPVFVNA 120

Query: 151 KQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQK 210
           KQYHGILRRRQSRAKAESENKV+KSRKPYLHESRHLHALRRARGCGGRFLNSKKNE++Q 
Sbjct: 121 KQYHGILRRRQSRAKAESENKVVKSRKPYLHESRHLHALRRARGCGGRFLNSKKNESEQN 180

Query: 211 GMASDDKSQSNLNLNSDKNEIASSDRQS 238
            +AS DKSQSN+NLNSDKNE+ASSD  S
Sbjct: 181 EVASGDKSQSNINLNSDKNELASSDSTS 208

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564393|ref|XP_002523193.1| Nuclear transcription factor Y subunit A-4, putative [Ricinus communis] gi|223537600|gb|EEF39224.1| Nuclear transcription factor Y subunit A-4, putative [Ricinus communis]

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 165/213 (77%), Positives = 179/213 (84%), Gaps = 6/213 (2%)

Query: 32  MTSSVHDMSDNSDADEQR-KHPESQLQSSTPAMGMSHPSITTPNVQYATHQ----VGAGH 86
           MTSSVHD SDNSDA+EQ+ K  E+Q QSS PA  M HP I+TPN  Y T +      A  
Sbjct: 1   MTSSVHDHSDNSDANEQQQKLSETQNQSSPPATAMVHPGISTPNAHYTTSRQLGSGHAMA 60

Query: 87  AMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPV 146
           A   AAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLP+D VEEPV
Sbjct: 61  AGGAAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPSDTVEEPV 120

Query: 147 FVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNE 206
           FVNAKQYHGILRRRQSRAKAESENKV+KSRKPYLHESRH HALRRARG GGRFLN+KKN+
Sbjct: 121 FVNAKQYHGILRRRQSRAKAESENKVIKSRKPYLHESRHQHALRRARGLGGRFLNAKKNQ 180

Query: 207 NQ-QKGMASDDKSQSNLNLNSDKNEIASSDRQS 238
           +Q Q  MAS DKSQSN+NLNSDK++I SSD +S
Sbjct: 181 HQEQNEMASGDKSQSNINLNSDKSDIVSSDGKS 213

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433674|ref|XP_004134622.1| PREDICTED: nuclear transcription factor Y subunit A-7-like isoform 1 [Cucumis sativus] gi|449433676|ref|XP_004134623.1| PREDICTED: nuclear transcription factor Y subunit A-7-like isoform 2 [Cucumis sativus]

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 162/204 (79%), Positives = 177/204 (86%), Gaps = 3/204 (1%)

Query: 32  MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHAMAPA 91
           MTSSVHD SDN +ADEQRK+ ESQ  SS+   G++    +TPN   A+ QVGAGH+M P 
Sbjct: 1   MTSSVHDYSDNGEADEQRKYSESQNHSSSVINGLNQ---STPNQYVASPQVGAGHSMVPP 57

Query: 92  AYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAK 151
           AYPYPDPYYRSIF PYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAK
Sbjct: 58  AYPYPDPYYRSIFTPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAK 117

Query: 152 QYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQKG 211
           QYHGILRRRQSRAKAESENK LKSRKPYLHESRHLHALRRARGCGGRFL S KNEN Q  
Sbjct: 118 QYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENHQNE 177

Query: 212 MASDDKSQSNLNLNSDKNEIASSD 235
           +AS DKSQ N+NLNSD++++ASS+
Sbjct: 178 VASGDKSQPNINLNSDRSDLASSE 201

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449490734|ref|XP_004158691.1| PREDICTED: nuclear transcription factor Y subunit A-7-like, partial [Cucumis sativus]

 Score =  292 bits (747), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 156/198 (78%), Positives = 171/198 (86%), Gaps = 3/198 (1%)

Query: 38  DMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHAMAPAAYPYPD 97
           D SDN +ADEQRK+ ESQ  SS+   G++    +TPN   A+ QVGAGH+M P AYPYPD
Sbjct: 6   DCSDNGEADEQRKYSESQNHSSSVINGLNQ---STPNQYVASPQVGAGHSMVPPAYPYPD 62

Query: 98  PYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGIL 157
           PYYRSIF PYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGIL
Sbjct: 63  PYYRSIFTPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGIL 122

Query: 158 RRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQKGMASDDK 217
           RRRQSRAKAESENK LKSRKPYLHESRHLHALRRARGCGGRFL S KNEN Q  +AS DK
Sbjct: 123 RRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENHQNEVASGDK 182

Query: 218 SQSNLNLNSDKNEIASSD 235
           SQ N+NLNSD++++ASS+
Sbjct: 183 SQPNINLNSDRSDLASSE 200

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555881|ref|XP_003546258.1| PREDICTED: nuclear transcription factor Y subunit A-7-like isoform 1 [Glycine max] gi|356555883|ref|XP_003546259.1| PREDICTED: nuclear transcription factor Y subunit A-7-like isoform 2 [Glycine max]

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 160/208 (76%), Positives = 177/208 (85%), Gaps = 4/208 (1%)

Query: 32  MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATH-QVGAGHAMAP 90
           MT+S  D+SDN +ADEQ++  E Q+Q  + A G+SH  I T NVQYAT  Q+G GHA+ P
Sbjct: 1   MTTSTRDISDN-EADEQQQ-SEPQMQHLS-ANGISHAGIGTQNVQYATPPQLGTGHAVVP 57

Query: 91  AAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNA 150
             YPYPDPYYRSIFAPYDAQ YPPQPYGG PMVHLQLMGIQQAGVPLPTD VEEPVFVNA
Sbjct: 58  PTYPYPDPYYRSIFAPYDAQTYPPQPYGGNPMVHLQLMGIQQAGVPLPTDTVEEPVFVNA 117

Query: 151 KQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQK 210
           KQYHGILRRRQSRAKAESE K  ++RKPYLHESRHLHALRRARGCGGRFLNSKK+ENQQ 
Sbjct: 118 KQYHGILRRRQSRAKAESEKKAARNRKPYLHESRHLHALRRARGCGGRFLNSKKDENQQD 177

Query: 211 GMASDDKSQSNLNLNSDKNEIASSDRQS 238
            +AS D+SQSN+NLNSDKNE+A SDR S
Sbjct: 178 EVASTDESQSNINLNSDKNELAPSDRTS 205

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056517|ref|XP_002298891.1| predicted protein [Populus trichocarpa] gi|222846149|gb|EEE83696.1| predicted protein [Populus trichocarpa]

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 155/196 (79%), Positives = 171/196 (87%), Gaps = 5/196 (2%)

Query: 24  RFYMRDGL----MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYAT 79
           RF   D +    MTSS+HD+SDNS+ADEQ+   E Q+QSS+PAM  +HP  +TPNVQYAT
Sbjct: 2   RFEFGDSVCITAMTSSLHDLSDNSEADEQQNESEPQIQSSSPAMAQAHPGFSTPNVQYAT 61

Query: 80  HQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPT 139
            Q+GAGHAMAPA YPYPDPYYRSIFAPYD QPYPPQPYG QPMVHLQLMGIQQAGVPLP+
Sbjct: 62  PQLGAGHAMAPATYPYPDPYYRSIFAPYDPQPYPPQPYGAQPMVHLQLMGIQQAGVPLPS 121

Query: 140 DAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRF 199
           DAVEEPVFVNAKQYHGILRRRQSRAKAESE+K +KSRKPYLHESRH HAL+RARGCGGRF
Sbjct: 122 DAVEEPVFVNAKQYHGILRRRQSRAKAESESKAIKSRKPYLHESRHQHALKRARGCGGRF 181

Query: 200 LNSKKNENQQ-KGMAS 214
           LNSKK ENQ+  G+AS
Sbjct: 182 LNSKKQENQEHNGVAS 197

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638418|gb|ACU19519.1| unknown [Glycine max]

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 147/208 (70%), Positives = 167/208 (80%), Gaps = 6/208 (2%)

Query: 34  SSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNV--QYAT-HQVGAGHAMAP 90
           +S HD++DN D  +Q+   ES +Q  +   G+S P I+T NV  QYA   Q+G GHAM P
Sbjct: 2   TSAHDLTDNEDDGQQQS--ESPMQPPS-VNGISDPGISTQNVNVQYAAPGQLGTGHAMVP 58

Query: 91  AAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNA 150
             YPYPDPYYRSIFAPYD QPYPPQ Y GQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNA
Sbjct: 59  HVYPYPDPYYRSIFAPYDTQPYPPQAYSGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNA 118

Query: 151 KQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQK 210
           KQYHGILRRRQ RAKAESENK++++RKPYLHESRH HAL R RGCGGRFLNSKK +NQ  
Sbjct: 119 KQYHGILRRRQYRAKAESENKIIRNRKPYLHESRHKHALTRPRGCGGRFLNSKKAKNQND 178

Query: 211 GMASDDKSQSNLNLNSDKNEIASSDRQS 238
            +AS DKSQSN+N+N +KN+  SSDR S
Sbjct: 179 DVASADKSQSNININFNKNDQTSSDRAS 206

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533053|ref|XP_003535083.1| PREDICTED: nuclear transcription factor Y subunit A-7-like isoform 2 [Glycine max]

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 158/220 (71%), Positives = 179/220 (81%), Gaps = 5/220 (2%)

Query: 20  DLSCRFYMRDGLMTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYAT 79
           D     ++   +MTS+ HD+SDN   D+Q+   ESQ++  + A G+S+  I T NVQYAT
Sbjct: 4   DWDTVLHVNQEIMTST-HDLSDNEADDQQQS--ESQMEPLS-ANGISYAGIATQNVQYAT 59

Query: 80  -HQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLP 138
             Q+G GHA+ P  YPYPDPYYRSIFAPYDAQ YPPQPYGG PMVHLQLMGIQQAGVPLP
Sbjct: 60  PSQLGTGHAVVPPTYPYPDPYYRSIFAPYDAQTYPPQPYGGNPMVHLQLMGIQQAGVPLP 119

Query: 139 TDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGR 198
           TD VEEPVFVNAKQYHGILRRRQSRAKAESE K  ++RKPYLHESRHLHALRRARGCGGR
Sbjct: 120 TDTVEEPVFVNAKQYHGILRRRQSRAKAESEKKAARNRKPYLHESRHLHALRRARGCGGR 179

Query: 199 FLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSDRQS 238
           FLNSKK+ENQQ  +AS D+SQS +NLNSDKNE+A SDR S
Sbjct: 180 FLNSKKDENQQDEVASTDESQSTINLNSDKNELAPSDRTS 219

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533051|ref|XP_003535082.1| PREDICTED: nuclear transcription factor Y subunit A-7-like isoform 1 [Glycine max]

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 155/206 (75%), Positives = 173/206 (83%), Gaps = 4/206 (1%)

Query: 34  SSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYAT-HQVGAGHAMAPAA 92
           +S HD+SDN   D+Q+   ESQ++  + A G+S+  I T NVQYAT  Q+G GHA+ P  
Sbjct: 2   TSTHDLSDNEADDQQQS--ESQMEPLS-ANGISYAGIATQNVQYATPSQLGTGHAVVPPT 58

Query: 93  YPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQ 152
           YPYPDPYYRSIFAPYDAQ YPPQPYGG PMVHLQLMGIQQAGVPLPTD VEEPVFVNAKQ
Sbjct: 59  YPYPDPYYRSIFAPYDAQTYPPQPYGGNPMVHLQLMGIQQAGVPLPTDTVEEPVFVNAKQ 118

Query: 153 YHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQKGM 212
           YHGILRRRQSRAKAESE K  ++RKPYLHESRHLHALRRARGCGGRFLNSKK+ENQQ  +
Sbjct: 119 YHGILRRRQSRAKAESEKKAARNRKPYLHESRHLHALRRARGCGGRFLNSKKDENQQDEV 178

Query: 213 ASDDKSQSNLNLNSDKNEIASSDRQS 238
           AS D+SQS +NLNSDKNE+A SDR S
Sbjct: 179 ASTDESQSTINLNSDKNELAPSDRTS 204

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
TAIR|locus:2061534	198	NF-YA4 ""nuclear factor Y, sub	0.470	0.565	0.612	6.7e-43
TAIR|locus:2028150	190	NF-YA7 ""nuclear factor Y, sub	0.731	0.915	0.513	4.6e-41
TAIR|locus:2014375	308	NF-YA5 ""nuclear factor Y, sub	0.428	0.331	0.567	1.3e-27
TAIR|locus:2007953	328	NF-YA8 ""nuclear factor Y, sub	0.310	0.225	0.706	3.6e-25
TAIR|locus:2088791	303	NF-YA9 ""nuclear factor Y, sub	0.441	0.346	0.535	3.6e-25
TAIR|locus:2088232	308	NF-YA6 ""nuclear factor Y, sub	0.378	0.292	0.582	4.6e-25
TAIR|locus:2032758	341	NF-YA3 ""nuclear factor Y, sub	0.407	0.284	0.545	2e-24
TAIR|locus:2144113	269	NF-YA10 ""nuclear factor Y, su	0.411	0.364	0.495	4.3e-23
TAIR|locus:2182245	272	NF-YA1 ""nuclear factor Y, sub	0.445	0.389	0.509	1e-22
SGD|S000003206	265	HAP2 "Subunit of the Hap2p/3p/	0.357	0.320	0.528	9.7e-22

TAIR|locus:2061534 NF-YA4 ""nuclear factor Y, subunit A4"" [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 6.7e-43, Sum P(2) = 6.7e-43
 Identities = 71/116 (61%), Positives = 95/116 (81%)

Query:   123 VHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHE 182
             V LQLMG+QQ GVPL  DAVEEPVFVNAKQYHGILRRRQSRAK E+ N+ +K++KPY+HE
Sbjct:    77 VQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILRRRQSRAKLEARNRAIKAKKPYMHE 136

Query:   183 SRHLHALRRARGCGGRFLNSKK----NENQQKGMASDDKSQSNLNLNSDKNEIASS 234
             SRHLHA+RR RGCGGRFLN+KK    ++ +++  + ++ S+++ +L S+K  +A+S
Sbjct:   137 SRHLHAIRRPRGCGGRFLNAKKENGDHKEEEEATSDENTSEASSSLRSEKLAMATS 192

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009411 "response to UV" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009739 "response to gibberellin stimulus" evidence=RCA

GO:0009751 "response to salicylic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2028150 NF-YA7 ""nuclear factor Y, subunit A7"" [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 96/187 (51%), Positives = 121/187 (64%)

Query:    32 MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHXXXXX 91
             MTSS+H++SDN  + E+++  +S  Q   P+   ++ SI T  V Y+    G  +     
Sbjct:     1 MTSSIHELSDNIGSHEKQEQRDSHFQPPIPS-ARNYESIVTSLV-YS--DPGTTNSMAPG 56

Query:    92 XXXXXXXXXRSIFXXXXXXXXXXXXXXXXXMVHLQLMGIQQAGVPLPTDAVEEPVFVNAK 151
                      RSIF                  VHLQLMG+QQ GVPLP+DAVEEPVFVNAK
Sbjct:    57 QYPYPDPYYRSIFAPPPQPYTG---------VHLQLMGVQQQGVPLPSDAVEEPVFVNAK 107

Query:   152 QYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQKG 211
             QYHGILRRRQSRA+ ES+NKV+KSRKPYLHESRHLHA+RR RGCGGRFLN+KK +   + 
Sbjct:   108 QYHGILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNAKKEDEHHED 167

Query:   212 MASDDKS 218
              + ++KS
Sbjct:   168 SSHEEKS 174

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

TAIR|locus:2014375 NF-YA5 ""nuclear factor Y, subunit A5"" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 59/104 (56%), Positives = 77/104 (74%)

Query:   124 HLQLMGIQQAGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHE 182
             HL++MG+  + VPLP    E EP+FVNAKQYH ILRRR+ RAK E++NK++K RKPYLHE
Sbjct:   157 HLEMMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKCRKPYLHE 216

Query:   183 SRHLHALRRARGCGGRFLNSKKNENQQKGMASDDKSQS-NLNLN 225
             SRHLHAL+RARG GGRFLN+KK +     + S   +   N +++
Sbjct:   217 SRHLHALKRARGSGGRFLNTKKLQESSNSLCSSQMANGQNFSMS 260

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

GO:0009785 "blue light signaling pathway" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

TAIR|locus:2007953 NF-YA8 ""nuclear factor Y, subunit A8"" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 53/75 (70%), Positives = 64/75 (85%)

Query:   131 QQAGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHAL 189
             Q   VPLP D +E EPVFVNAKQ+H I+RRRQ RAK E++NK++K+RKPYLHESRH+HAL
Sbjct:   158 QMTRVPLPFDLIENEPVFVNAKQFHAIMRRRQQRAKLEAQNKLIKARKPYLHESRHVHAL 217

Query:   190 RRARGCGGRFLNSKK 204
             +R RG GGRFLN+KK
Sbjct:   218 KRPRGSGGRFLNTKK 232

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

TAIR|locus:2088791 NF-YA9 ""nuclear factor Y, subunit A9"" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 60/112 (53%), Positives = 77/112 (68%)

Query:   129 GIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHA 188
             G+  + +PLP +  +EPVFVNAKQY  ILRRRQ+RAKAE E K++KSRKPYLHESRH HA
Sbjct:   151 GMPHSRMPLPPEMAQEPVFVNAKQYQAILRRRQARAKAELEKKLIKSRKPYLHESRHQHA 210

Query:   189 LRRARGCGGRFLNSKKNENQQKGMASDDKS-----QSNLNLNSDKNEIASSD 235
             +RR RG GGRF  +KK   +     +++KS     QS  + NSD+ E  + D
Sbjct:   211 MRRPRGTGGRF--AKKTNTEASKRKAEEKSNGHVTQSPSSSNSDQGEAWNGD 260

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0055046 "microgametogenesis" evidence=IMP

TAIR|locus:2088232 NF-YA6 ""nuclear factor Y, subunit A6"" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 53/91 (58%), Positives = 70/91 (76%)

Query:   124 HLQLMGIQQAGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHE 182
             H Q+ G+  + +PLP +  E EP+FVNAKQY  ILRRR+ RAK E++NK++K RKPYLHE
Sbjct:   150 HPQIRGLVPSRMPLPHNIPENEPIFVNAKQYQAILRRRERRAKLEAQNKLIKVRKPYLHE 209

Query:   183 SRHLHALRRARGCGGRFLNSKKNENQQKGMA 213
             SRHLHAL+R RG GGRFLN+KK++     ++
Sbjct:   210 SRHLHALKRVRGSGGRFLNTKKHQESNSSLS 240

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

TAIR|locus:2032758 NF-YA3 ""nuclear factor Y, subunit A3"" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 54/99 (54%), Positives = 74/99 (74%)

Query:   126 QLMGIQQAGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRK-PYLHES 183
             Q++ +    VPLP +  E +PVFVNAKQYH I+RRRQ RAK E++NK++++RK PYLHES
Sbjct:   160 QMVSMIPGRVPLPAELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKVPYLHES 219

Query:   184 RHLHALRRARGCGGRFLNSKKNENQQKGMASDDKSQSNL 222
             RH+HAL+R RG GGRFLN+KK   + +  A+ ++ Q  L
Sbjct:   220 RHVHALKRPRGSGGRFLNTKKLLQESEQAAAREQEQDKL 258

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2144113 NF-YA10 ""nuclear factor Y, subunit A10"" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
 Identities = 52/105 (49%), Positives = 74/105 (70%)

Query:   135 VPLPTDAVEE-PVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRAR 193
             +PL  +  E+  ++VN+KQYHGI+RRRQSRAKAE   K+ + RKPY+H SRHLHA+RR R
Sbjct:   124 IPLKMETEEDGTIYVNSKQYHGIIRRRQSRAKAE---KLSRCRKPYMHHSRHLHAMRRPR 180

Query:   194 GCGGRFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSDRQS 238
             G GGRFLN+K  +  ++   S+  SQS+  +   +NE  +S R++
Sbjct:   181 GSGGRFLNTKTADAAKQSKPSN--SQSS-EVFHPENETINSSREA 222

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

TAIR|locus:2182245 NF-YA1 ""nuclear factor Y, subunit A1"" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 55/108 (50%), Positives = 71/108 (65%)

Query:   128 MGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLH 187
             +G+ +    LP D  +EPV+VNAKQY GILRRR++RAKAE E KV++ RKPYLHESRH H
Sbjct:   156 LGMPRERTALPLDMAQEPVYVNAKQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKH 215

Query:   188 ALRRARGCGGRFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSD 235
             A+RRAR  GGRF  +KK+E +    A     +     NS  +E   +D
Sbjct:   216 AMRRARASGGRF--AKKSEVEAGEDAGGRDRERGSATNSSGSEQVETD 261

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0055046 "microgametogenesis" evidence=IMP

SGD|S000003206 HAP2 "Subunit of the Hap2p/3p/4p/5p CCAAT-binding complex" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 222 (83.2 bits), Expect = 9.7e-22, Sum P(2) = 9.7e-22
 Identities = 46/87 (52%), Positives = 59/87 (67%)

Query:   137 LPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCG 196
             L T   E+P +VNAKQY+ IL+RR +RAK E + ++ + RKPYLHESRH HA+RR RG G
Sbjct:   152 LGTAIAEQPFYVNAKQYYRILKRRYARAKLEEKLRISRERKPYLHESRHKHAMRRPRGEG 211

Query:   197 GRFLNSK--KNENQQKGMASDDKSQSN 221
             GRFL +   K    +K  ASDD   S+
Sbjct:   212 GRFLTAAEIKAMKSKKSGASDDPDDSH 238

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0003677 "DNA binding" evidence=IEA

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IDA

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;IDA;IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=IDA

GO:0000436 "carbon catabolite activation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0043457 "regulation of cellular respiration" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84JP1	NFYA7_ARATH	No assigned EC number	0.5862	0.7815	0.9789	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.02360004 hypothetical protein (208 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	238
pfam02045	57	pfam02045, CBFB_NFYA, CCAAT-binding transcription	1e-34
smart00521	62	smart00521, CBF, CCAAT-Binding transcription Facto	7e-34
COG5224	248	COG5224, HAP2, CCAAT-binding factor, subunit B [Tr	1e-08

>gnl|CDD|190198 pfam02045, CBFB_NFYA, CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

 Score =  117 bits (296), Expect = 1e-34
 Identities = 44/57 (77%), Positives = 52/57 (91%)

Query: 143 EEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRF 199
           +EP++VNAKQYH ILRRRQ+RAK E+ENK++KSRKPYLHESRH HA+RR RG GGRF
Sbjct: 1   DEPIYVNAKQYHRILRRRQARAKLEAENKLIKSRKPYLHESRHKHAMRRPRGSGGRF 57

Length = 57

>gnl|CDD|128795 smart00521, CBF, CCAAT-Binding transcription Factor

 Score =  115 bits (291), Expect = 7e-34
 Identities = 47/61 (77%), Positives = 53/61 (86%)

Query: 141 AVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFL 200
           A EEPV+VNAKQYH ILRRRQ+RAK E++ K+ K RKPYLHESRHLHA+RR RG GGRFL
Sbjct: 1   AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFL 60

Query: 201 N 201
           N
Sbjct: 61  N 61

Length = 62

>gnl|CDD|227549 COG5224, HAP2, CCAAT-binding factor, subunit B [Transcription]

 Score = 53.7 bits (128), Expect = 1e-08
 Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 143 EEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNS 202
            +P +VNAKQ + I +R   R   +    V   R  YLHESRH HA+ R R   GRFL +
Sbjct: 158 FQPDYVNAKQGNEISKRPGLRVYLDD--SVSAGRAFYLHESRHKHAMLRVRDPTGRFLTA 215

Query: 203 KKNENQQKGMASDD 216
            + +       + D
Sbjct: 216 SEIDPLNLTGNTQD 229

Length = 248

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	238
KOG1561	307	consensus CCAAT-binding factor, subunit B (HAP2) [	100.0
smart00521	62	CBF CCAAT-Binding transcription Factor.	100.0
PF02045	58	CBFB_NFYA: CCAAT-binding transcription factor (CBF	100.0
COG5224	248	HAP2 CCAAT-binding factor, subunit B [Transcriptio	99.83

>KOG1561 consensus CCAAT-binding factor, subunit B (HAP2) [Transcription]

Probab=100.00  E-value=2.9e-44  Score=324.86  Aligned_cols=120  Identities=48%  Similarity=0.783  Sum_probs=102.6

Q ss_pred             cccccccC-CCCCCCCCcccccccCCCCCCCCCCCCCCCcchhhhhcccc-CCCCCCCCCCC-CceeechhhhHHHHHHH
Q 026474           84 AGHAMAPA-AYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQ-AGVPLPTDAVE-EPVFVNAKQYHGILRRR  160 (238)
Q Consensus        84 ~ghs~a~~-~yPY~Dpyygg~~aaY~~q~~~~~~y~~q~m~h~q~~G~~~-~r~pLp~~~~e-ePvyVNaKQY~rIlRRR  160 (238)
                      ..|..+++ .+||.+|||+|++..++  +|.+++..   .+++|++||.+ .|+|||.++.| |||||||||||||||||
T Consensus       126 ~~~~~~~~s~~~~~~p~~~g~~~~~~--~y~~~~~~---~~~~q~~g~~~~~r~pLP~~~~e~ePl~VNaKQY~~IlrRR  200 (307)
T KOG1561|consen  126 SMSPANNTSGNPITSPHYRGVLDMSG--AYSGQPTN---TASTQYSGPVPHDRTPLPQTDSETEPLYVNAKQYHRILRRR  200 (307)
T ss_pred             ccccccccccCCCCCCcccceecccc--cccCCCCc---cccccccCCCCcCcccCCccccCCCceeEcHHHHHHHHHHH
Confidence            34444544 48999999999999544  22222332   36779999988 99999999877 99999999999999999


Q ss_pred             HHHHHHHhhhhhhhcCCCcccchhhHHHhhccCCCCCcccccccchhh
Q 026474          161 QSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQ  208 (238)
Q Consensus       161 q~RaklE~~~kl~k~RKpYLHESRH~HAm~R~RG~gGRFL~~k~~~~~  208 (238)
                      ++|||||+++||+|.||||||||||+|||||+||+||||||+||.+++
T Consensus       201 q~RaKlEa~~klik~RkpYLHESRH~HAmkR~RG~GGRFln~k~~~~~  248 (307)
T KOG1561|consen  201 QARAKLEATTKLIKARKPYLHESRHLHAMKRARGEGGRFLNTKEYHDD  248 (307)
T ss_pred             HHHhhhhhcccchhhcCccccchhhHHHhhcccCCCCCCCchhhhhhh
Confidence            999999999999999999999999999999999999999999997655

>smart00521 CBF CCAAT-Binding transcription Factor

Probab=100.00  E-value=1.9e-38  Score=233.08  Aligned_cols=62  Identities=76%  Similarity=1.183  Sum_probs=60.1

Q ss_pred             CCCCceeechhhhHHHHHHHHHHHHHHhhhhhhhcCCCcccchhhHHHhhccCCCCCccccc
Q 026474          141 AVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNS  202 (238)
Q Consensus       141 ~~eePvyVNaKQY~rIlRRRq~RaklE~~~kl~k~RKpYLHESRH~HAm~R~RG~gGRFL~~  202 (238)
                      ++|+|||||||||++|||||++|||+|+++|+++.||||||||||+|||+|+||+||||||+
T Consensus         1 ~~~~piyVNaKQy~~IlrRR~~Rak~e~~~kl~~~rkpYlhESRH~HAm~R~Rg~gGRFl~~   62 (62)
T smart00521        1 AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLNT   62 (62)
T ss_pred             CCCcceeEcHHHHHHHHHHHHHHHHHHHhcchhhccCCcccchhHHHHHccCcCCCCCCCCC
Confidence            36899999999999999999999999999999999999999999999999999999999985

>PF02045 CBFB_NFYA: CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B; InterPro: IPR001289 The CCAAT-binding factor (CBFB/NF-YA) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin []

Probab=100.00  E-value=5.5e-36  Score=217.71  Aligned_cols=57  Identities=75%  Similarity=1.184  Sum_probs=56.3

Q ss_pred             CCceeechhhhHHHHHHHHHHHHHHhhhhh-hhcCCCcccchhhHHHhhccCCCCCcc
Q 026474          143 EEPVFVNAKQYHGILRRRQSRAKAESENKV-LKSRKPYLHESRHLHALRRARGCGGRF  199 (238)
Q Consensus       143 eePvyVNaKQY~rIlRRRq~RaklE~~~kl-~k~RKpYLHESRH~HAm~R~RG~gGRF  199 (238)
                      |+|||||||||++|||||++|||||+++|+ ++.||||||||||+|||+|+||+||||
T Consensus         1 ~~piyVNaKQY~rIlrRR~~Rakle~~~k~~~~~rk~YlheSRH~HA~~R~Rg~gGRF   58 (58)
T PF02045_consen    1 EEPIYVNAKQYHRILRRRQARAKLEAEGKLSPKKRKPYLHESRHKHAMRRPRGPGGRF   58 (58)
T ss_pred             CCCeeECHHHHHHHHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHcCccCCCCCC
Confidence            689999999999999999999999999999 999999999999999999999999999

The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding []. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The B subunit contains a region of similarity with the yeast protein HAP2 []. For the B subunit it has been suggested that the N-terminal portion of the conserved region is involved in subunit interaction and the C-terminal region involved in DNA-binding [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5224 HAP2 CCAAT-binding factor, subunit B [Transcription]

Probab=99.83  E-value=2e-21  Score=172.07  Aligned_cols=67  Identities=39%  Similarity=0.490  Sum_probs=61.1

Q ss_pred             CCCceeechhhhHHHHHHHHHHHHHHhhhhhhhcCCCcccchhhHHHhhccCCCCCcccccccchhhhc
Q 026474          142 VEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQK  210 (238)
Q Consensus       142 ~eePvyVNaKQY~rIlRRRq~RaklE~~~kl~k~RKpYLHESRH~HAm~R~RG~gGRFL~~k~~~~~~~  210 (238)
                      ..+|.|||+|||++|++||-+|++||..  |.-.|..|||||||+|||+|+|+++||||++.|.+..+.
T Consensus       157 sfqp~Yvnakq~n~i~kr~~~r~~ld~~--~~~~r~~ylHesrhkham~r~r~ptgrfLtasEi~~ln~  223 (248)
T COG5224         157 SFQPDYVNAKQGNEISKRPGLRVYLDDS--VSAGRAFYLHESRHKHAMLRVRDPTGRFLTASEIDPLNL  223 (248)
T ss_pred             ccCcchhhhhhhhHHhcchhHHHHHHHH--hhhhhhhccccchhhhhhhcccCCCcceecHHhhhhhhh
Confidence            4789999999999999999999999985  556777799999999999999999999999999987753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	238
4awl_A	78	The Nf-y Transcription Factor Is Structurally And F		4e-18
4g91_A	64	Ccaat-Binding Complex From Aspergillus Nidulans Len		1e-14

>pdb|4AWL|A Chain A, The Nf-y Transcription Factor Is Structurally And Functionally A Sequence Specific Histone Length = 78

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 53/66 (80%)
Query: 142 VEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLN 201
           +EEP++VNAKQYH IL+RRQ+RAK E+E K+ K R+ YLHESRH HA+ R RG GGRF +
Sbjct: 1   MEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFS 60
Query: 202 SKKNEN 207
            K+ ++
Sbjct: 61  PKEKDS 66

>pdb|4G91|A Chain A, Ccaat-Binding Complex From Aspergillus Nidulans Length = 64

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Query: 142 VEEPVFVNAKQYHGILRRRQSRAKAESENKVL-KSRKPYLHESRHLHALRRARGCGGRFL 200
           +E P++VNAKQ+H IL+RR +R K E + ++  K RKPYLHESRH HA+RR RG GGRFL
Sbjct: 1   MESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFL 60
Query: 201 NS 202
            +
Sbjct: 61  TA 62

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	238
4g92_A	64	HAPB protein; transcription factor, nucleosome, mi	100.0

>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*

Probab=100.00  E-value=1.5e-38  Score=233.75  Aligned_cols=62  Identities=60%  Similarity=1.007  Sum_probs=58.6

Q ss_pred             CCceeechhhhHHHHHHHHHHHHHHhhhhhh-hcCCCcccchhhHHHhhccCCCCCccccccc
Q 026474          143 EEPVFVNAKQYHGILRRRQSRAKAESENKVL-KSRKPYLHESRHLHALRRARGCGGRFLNSKK  204 (238)
Q Consensus       143 eePvyVNaKQY~rIlRRRq~RaklE~~~kl~-k~RKpYLHESRH~HAm~R~RG~gGRFL~~k~  204 (238)
                      |||||||||||++|||||++|||+|++++++ +.||||||||||+|||+|+||+||||||++|
T Consensus         2 eePiyVNaKQy~~IlrRR~~Rakle~~~kl~~~~rk~YlhESRH~HAm~R~Rg~gGRFl~~~e   64 (64)
T 4g92_A            2 ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFLTADE   64 (64)
T ss_dssp             -CCSCCCTTTHHHHHHHHHHHHHHHHHTTCCSSSCCSCSCHHHHHHHHHSCBCTTSCBCCCC-
T ss_pred             CCCeeECHHHHHHHHHHHHHHHHHHHhCCcccccccCcchhHHHHHHhcCCcCCCCccccCCC
Confidence            7999999999999999999999999999985 8899999999999999999999999999986

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00