Citrus Sinensis ID: 026497

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
Protein Sequence
MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTEDTKCCPSV
Secondary Structure (PSIPRED)
cccEEcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHEEcccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccHHHEHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
meklkwrskssqaksLGTIVSIAGAFVVtfykgppivrprldiasldqiqplqsnwilgGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMragplyvsmfkPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGkakeentiddrgtwsselssekvpllqnstedtkccpsv
Flexible Loop (DISEMBL)
meklkwrskssqakslgTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEentiddrgtwsselssekvpllqnstedtkccpsv
Low Complexity Region (SEG)
MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTEDTKCCPSV
Disordered region (IsUnstruct)
***************LGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK************************************
Disordered Region (DISOPRED)
MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVR*****************WILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG***************************************
Disordered Region (DISEMBL)
**************SLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENTID******************************
Disordered Region (DISPRO)
*EKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPR*************SNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA*************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTEDTKCCPSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	237	2.2.26 [Sep-21-2011]
Q94JU2	367	WAT1-related protein At3g	yes	no	0.974	0.629	0.386	4e-43
Q9FL08	368	WAT1-related protein At5g	no	no	0.953	0.614	0.378	1e-40
F4KHA8	370	WAT1-related protein At5g	no	no	0.949	0.608	0.369	3e-39
Q8VYZ7	360	WAT1-related protein At3g	no	no	0.940	0.619	0.364	4e-34
Q945L4	339	WAT1-related protein At5g	no	no	0.886	0.619	0.378	7e-34
F4IYZ0	358	WAT1-related protein At3g	no	no	0.940	0.622	0.379	7e-34
Q56X95	355	WAT1-related protein At3g	no	no	0.932	0.622	0.367	2e-33
Q6J163	410	Auxin-induced protein 5NG	N/A	no	0.860	0.497	0.317	2e-32
F4J9A3	369	WAT1-related protein At3g	no	no	0.869	0.558	0.342	2e-32
F4I5D5	375	WAT1-related protein At1g	no	no	0.962	0.608	0.331	1e-31

>sp|Q94JU2|WTR18_ARATH WAT1-related protein At3g28050 OS=Arabidopsis thaliana GN=At3g28050 PE=2 SV=1

 Score =  174 bits (442), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 94/243 (38%), Positives = 138/243 (56%), Gaps = 12/243 (4%)

Query: 1   MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGG 60
           ME + ++  SS AK LGT+VSI GAF+VT Y GP ++       SL   Q    NWILG 
Sbjct: 125 MESVSFKRTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVSLRS-QSTNPNWILGA 183

Query: 61  FYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSL-TVVTELSAWKLR 119
            +LA +   +  WYI+Q   ++E+PA   ++C+     +   A+ +L T   +L AWK++
Sbjct: 184 GFLAVEYFCVPLWYIVQTQIMREYPAEFTVVCFYSIGVSFWTALVTLFTEGNDLGAWKIK 243

Query: 120 LDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFL 179
            ++ L +I  S + G+    T+  W L   GPL+V+MFKPL+I  +  MGVI   D L++
Sbjct: 244 PNIALVSIVCSGLFGSCINNTIHTWALRIKGPLFVAMFKPLSIAIAVAMGVIFLRDSLYI 303

Query: 180 GSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSE----------KVPLLQNSTE 229
           GSL+GA +I IGFY VMWGKAKE   ++D    + E ++E          K PLL++   
Sbjct: 304 GSLIGATVITIGFYTVMWGKAKEVALVEDDNKANHEEANEADLDSPSGSQKAPLLESYKN 363

Query: 230 DTK 232
           D  
Sbjct: 364 DEH 366

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL08|WTR42_ARATH WAT1-related protein At5g40240 OS=Arabidopsis thaliana GN=At5g40240 PE=2 SV=1

 Score =  166 bits (420), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 92/243 (37%), Positives = 141/243 (58%), Gaps = 17/243 (6%)

Query: 1   MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPI--------VRPRLDIASLDQIQPL 52
           ME+++ RS ++QAK +G I+SI+GA VV  YKGP +        V P + +    Q+  +
Sbjct: 133 MEQVRLRSSATQAKIIGAILSISGALVVVLYKGPQVLASASFTTVLPTVTLH--QQLTSI 190

Query: 53  QSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTE 112
           +S+WI+GG  LA+Q  LIS WYILQ   ++ +P  I ++ +   F+T+++    L   + 
Sbjct: 191 ESSWIIGGLLLASQYFLISVWYILQTRVMEVYPEEITVVFFYNLFATLISVPVCLFAESN 250

Query: 113 LSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVII 172
           L++W L+ D+ L AI YS V  + F      W L   GP+Y+S+F+PL+I  +  MG I 
Sbjct: 251 LTSWVLKPDISLAAIIYSGVFVSLFSALTHTWGLHLKGPVYISLFRPLSIAIAVAMGAIF 310

Query: 173 FGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTEDTK 232
            GD L LGS++G++I+ IGFY V+WGKA+E+      G       SE+ PLL     +  
Sbjct: 311 LGDALHLGSVIGSMILCIGFYTVIWGKAREDTIKTVAG-------SEQSPLLLTHIIEDG 363

Query: 233 CCP 235
             P
Sbjct: 364 AFP 366

Arabidopsis thaliana (taxid: 3702)

>sp|F4KHA8|WTR41_ARATH WAT1-related protein At5g40230 OS=Arabidopsis thaliana GN=At5g40230 PE=2 SV=1

 Score =  162 bits (409), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 88/238 (36%), Positives = 145/238 (60%), Gaps = 13/238 (5%)

Query: 1   MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVR------PRLDIASLDQIQPLQS 54
           ME++  RS ++QAK +GTIVSI+GA VV  YKGP ++       P   I+    +    S
Sbjct: 134 MEQIVLRSSATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDS 193

Query: 55  NWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELS 114
           +WI+GG  LA Q +L+S WYILQ   ++ +P  I ++      +T+++A   L    +L+
Sbjct: 194 SWIIGGLLLATQYLLVSVWYILQTRVMELYPEEITVVFLYNLCATLISAPVCLFAEKDLN 253

Query: 115 AWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFG 174
           ++ L+  V L ++ YS  + ++F + +  W L   GP+Y+S+FKPL+I+ +  MGV+  G
Sbjct: 254 SFILKPGVSLASVMYSGGLVSSFGSVIHTWGLHLKGPVYISLFKPLSIVIAVAMGVMFLG 313

Query: 175 DGLFLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTEDTK 232
           D L+LGS++G++I+ +GFY V+WGKA+E++     GT       E+ PLL + T + +
Sbjct: 314 DALYLGSVIGSLILSLGFYTVIWGKAREDSIKTVAGT-------EQSPLLPSHTIEEE 364

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYZ7|WTR20_ARATH WAT1-related protein At3g28070 OS=Arabidopsis thaliana GN=At3g28070 PE=2 SV=1

 Score =  144 bits (364), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 86/236 (36%), Positives = 129/236 (54%), Gaps = 13/236 (5%)

Query: 1   MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPI-VRPRLDIASLDQIQP----LQSN 55
           MEK+ ++ +SS AK +GTI+S+ GA VV FY GP + +       +  Q  P      S+
Sbjct: 130 MEKVSFKERSSLAKLMGTILSLIGALVVIFYHGPRVFLASSPPYVNFRQFSPPLSSSNSD 189

Query: 56  WILGGFYLAAQAILISAWYILQAITLKEFPALI-VMLCYQYFFSTILAAMFSLTVVTELS 114
           W++GG  L  Q I +S  +ILQA  +  +PA   V   Y    S + + +  +      S
Sbjct: 190 WLIGGALLTMQGIFVSVSFILQAHIMSVYPAAFRVSFLYTVCVSIVTSTIGLVVEKNNPS 249

Query: 115 AWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFG 174
            W +  D+ L  I   A++ + +   +  W +   GPLY+++FKPL+IL + VMG I   
Sbjct: 250 VWIIHFDITLITIVTMAIVTSVYYV-IHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLN 308

Query: 175 DGLFLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTED 230
           D L+LG L+G ++I +GFY VMWGKA EE    D+ ++S +   EK PLL N   D
Sbjct: 309 DSLYLGCLIGGILITLGFYAVMWGKANEE---KDQLSFSEK---EKTPLLLNRKND 358

Arabidopsis thaliana (taxid: 3702)

>sp|Q945L4|WTR40_ARATH WAT1-related protein At5g40210 OS=Arabidopsis thaliana GN=At5g40210 PE=2 SV=1

 Score =  144 bits (362), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 86/227 (37%), Positives = 126/227 (55%), Gaps = 17/227 (7%)

Query: 1   MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGG 60
           ME +    KSS AK LGTI+SI GA VVT Y GP              +    S+WI+GG
Sbjct: 126 MENISLGKKSSVAKVLGTILSIIGALVVTLYHGP-------------MLMSSHSDWIIGG 172

Query: 61  FYLAAQAILISAWYILQAITLKEFP-ALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLR 119
             LA Q IL+S  Y++ A T+  +P A++V L +    + + A +  L       AW +R
Sbjct: 173 GLLALQYILVSVSYLVMAHTMGRYPSAVVVTLVHNVCIAVVCAFVSLLAEKDNPKAWVIR 232

Query: 120 LDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFL 179
            D+ L  +  + ++ + +   +  W +   GP+Y+SMFKPL+IL + V   I  G+ L+L
Sbjct: 233 FDITLITVVATGILNSGYYV-IHTWAVSHKGPVYLSMFKPLSILIAAVSTFIFLGESLYL 291

Query: 180 GSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQN 226
           GS++G ++I IGFY+V+WGKAKE+  +D  G   S   S   PLL N
Sbjct: 292 GSVMGGILISIGFYMVLWGKAKEDK-VDIIGAIESS-PSHNAPLLDN 336

Arabidopsis thaliana (taxid: 3702)

>sp|F4IYZ0|WTR21_ARATH WAT1-related protein At3g28080 OS=Arabidopsis thaliana GN=At3g28080 PE=2 SV=1

 Score =  144 bits (362), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 90/237 (37%), Positives = 130/237 (54%), Gaps = 14/237 (5%)

Query: 1   MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIV----RPRLDIASLDQIQPLQS-N 55
           MEK+ ++ +SS AK +GTI+S+ GAFVV FY GP +      P L+   L         +
Sbjct: 127 MEKVSFKERSSVAKVMGTILSLIGAFVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSKSD 186

Query: 56  WILGGFYLAAQAILISAWYILQAITLKEFP-ALIVMLCYQYFFSTILAAMFSLTV-VTEL 113
           W++GG  L  Q I +S  +ILQ   ++E+P A  V + Y    S I+ +M  L V     
Sbjct: 187 WLIGGAILTIQGIFVSVSFILQTHIMREYPEAFTVSILYILCIS-IVTSMIGLVVEKNNP 245

Query: 114 SAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIF 173
           S W +  D+ LF I  + +I + +   +  W +    PLY+++FKPL+IL + VMG I  
Sbjct: 246 SIWIIHFDITLFTIVTTGIITSVYYV-IHSWAIRHKRPLYLAIFKPLSILIAVVMGTIFL 304

Query: 174 GDGLFLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTED 230
            D L+LG L+G ++I +GFYVVMWGKA EE     +    S    EK PLL +   D
Sbjct: 305 NDSLYLGCLIGGILITLGFYVVMWGKANEE-----KNKLLSFSGKEKTPLLLSGKND 356

Arabidopsis thaliana (taxid: 3702)

>sp|Q56X95|WTR23_ARATH WAT1-related protein At3g28130 OS=Arabidopsis thaliana GN=At3g28130 PE=2 SV=1

 Score =  142 bits (357), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/237 (36%), Positives = 129/237 (54%), Gaps = 16/237 (6%)

Query: 1   MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLD-IASLDQIQPLQS----N 55
           MEK  ++ KSS AK +GTIVS+ GA VV  Y GP +  P       L Q+    S    +
Sbjct: 126 MEKASFKEKSSVAKMVGTIVSLVGALVVVLYHGPRVFTPSSPPFPQLRQLLLPLSSSNSD 185

Query: 56  WILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTV-VTELS 114
           WI+GG  LA +  L+   +ILQA  +K +PA   +  + +  ++IL ++  +       S
Sbjct: 186 WIIGGCLLAIKDTLVPVAFILQAHIMKLYPAPFTVSFFYFLIASILTSLIGIVAEKNNPS 245

Query: 115 AWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFG 174
            W +  D+ L  I    +    +   + LW +   GP+Y+++F+PL+IL + +MG I  G
Sbjct: 246 IWIIHFDITLVCIVVGGIFNPGYYA-IHLWAVRNKGPVYLAIFRPLSILIAVIMGAIFLG 304

Query: 175 DGLFLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELS-SEKVPLLQNSTED 230
           D  +LGSLVG ++I +GFY VMWGKAKE  T          LS SE+ PLL  + +D
Sbjct: 305 DSFYLGSLVGGILISLGFYTVMWGKAKEGKT--------QFLSLSEETPLLDENIDD 353

Arabidopsis thaliana (taxid: 3702)

>sp|Q6J163|5NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1

 Score =  139 bits (350), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 119/214 (55%), Gaps = 10/214 (4%)

Query: 1   MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIV---RPRLDIASL-------DQIQ 50
           +EK+    +   AK +GT+  ++GA ++T YKGPPI    RP L++ +        + + 
Sbjct: 132 LEKVHISRRDGLAKIIGTVACVSGATIITLYKGPPITHIWRPNLEVTASYFKAFQGNDLS 191

Query: 51  PLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVV 110
               NW LG  YL    +  S W +LQA  LK +PA + +  +  FF  I   + +    
Sbjct: 192 AKSENWTLGCIYLLGNCLAWSGWIVLQAPVLKRYPARLSVTSFTCFFGVIQFLIIAAFFE 251

Query: 111 TELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGV 170
           T+L  WK+     LF I Y+  + +    ++ +WC+ R GP++V++++P+  +   +M  
Sbjct: 252 TDLEHWKIHSGGELFTILYAGFVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAIMAS 311

Query: 171 IIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEEN 204
           II G+  +LG + GA++I+IG Y+V+WGK++E+ 
Sbjct: 312 IILGEQFYLGGIFGAILIIIGLYLVLWGKSEEKR 345

Pinus taeda (taxid: 3352)

>sp|F4J9A3|WTR26_ARATH WAT1-related protein At3g53210 OS=Arabidopsis thaliana GN=At3g53210 PE=2 SV=1

 Score =  139 bits (349), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 122/210 (58%), Gaps = 4/210 (1%)

Query: 1   MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASL----DQIQPLQSNW 56
           +EK++W+ K   AK +GTIVS+AG+ V+T YKGP I +P L+I +     ++ +    NW
Sbjct: 123 IEKVEWKRKDGIAKVVGTIVSVAGSLVITLYKGPTIYQPSLNIVNQTIKPEEAEEENKNW 182

Query: 57  ILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAW 116
            LG   L    +  S+W +LQ+  LK++PA    + Y  FF+ I     S     +L  W
Sbjct: 183 TLGCLCLMGHCLCWSSWIVLQSPLLKKYPARFSFVSYSCFFAVIQFFGISAYFERDLERW 242

Query: 117 KLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDG 176
           K+     L+A+ Y+ ++G+A +  + ++ + R GPL+VS + PL  L + V+  +  G+ 
Sbjct: 243 KIISGGELYALLYTGLVGSAMVFAIQIYVVERGGPLFVSAYLPLQTLIAAVLATLALGEH 302

Query: 177 LFLGSLVGAVIIVIGFYVVMWGKAKEENTI 206
            +LG L+GA++I+ G Y+V+ GK+ E   +
Sbjct: 303 FYLGGLIGAILIMSGLYLVVMGKSWENQAL 332

Arabidopsis thaliana (taxid: 3702)

>sp|F4I5D5|WTR11_ARATH WAT1-related protein At1g70260 OS=Arabidopsis thaliana GN=At1g70260 PE=2 SV=1

 Score =  136 bits (342), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 133/244 (54%), Gaps = 16/244 (6%)

Query: 3   KLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPI-----VRPRLDIASLDQI---QPLQS 54
           KL WR+ S++AK +GTIVS++GAFV   YKGP I       P   + S+ ++     L  
Sbjct: 130 KLDWRNTSTRAKLMGTIVSLSGAFVEELYKGPFIRPASSASPNRFLKSVPKLLVYYNLPD 189

Query: 55  NWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELS 114
           NW LG  +LA     +S + ++Q  T+K++P ++ +  +     TI   +FSL +  +LS
Sbjct: 190 NWFLGCIFLAVAVFSVSLFNVVQTGTVKKYPHVMKVASFYSIVGTIQCLLFSLFMERDLS 249

Query: 115 AWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFG 174
           AWK++ +  L+ I  +   G+   T++ + C    GP YV +FKP  I ++T+ G   F 
Sbjct: 250 AWKIQPNFDLYLIIATGTFGSVIRTSVHVKCTQMKGPYYVPLFKPFGIFWATLFGTSFFV 309

Query: 175 DGLFLGSLVGAVIIVIGFYVVMWGKAKE----ENTIDDRGT----WSSELSSEKVPLLQN 226
           + L  GS++GA I  +G++ V WG+ KE    +++ ++R +       +    KVPLL N
Sbjct: 310 NSLHYGSVLGAAIAGVGYFTVSWGQLKESEEKQSSNEERKSIKTIHHRDEDEYKVPLLIN 369

Query: 227 STED 230
             E 
Sbjct: 370 QEES 373

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
255581160	356	Auxin-induced protein 5NG4, putative [Ri	0.970	0.646	0.554	2e-64
225424736	346	PREDICTED: auxin-induced protein 5NG4 [V	0.936	0.641	0.537	2e-59
356497781	351	PREDICTED: LOW QUALITY PROTEIN: auxin-in	0.957	0.646	0.513	6e-58
356502002	351	PREDICTED: auxin-induced protein 5NG4-li	0.957	0.646	0.491	5e-55
356497783	347	PREDICTED: auxin-induced protein 5NG4-li	0.940	0.642	0.486	8e-55
224099697	355	predicted protein [Populus trichocarpa]	0.974	0.650	0.476	1e-53
296086518	356	unnamed protein product [Vitis vinifera]	0.962	0.640	0.491	2e-52
147778659	335	hypothetical protein VITISV_034106 [Viti	0.962	0.680	0.491	2e-52
255581162	349	Auxin-induced protein 5NG4, putative [Ri	0.962	0.653	0.450	1e-50
388502250	352	unknown [Medicago truncatula]	0.940	0.633	0.502	1e-50

>gi|255581160|ref|XP_002531393.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528986|gb|EEF30977.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 128/231 (55%), Positives = 169/231 (73%), Gaps = 1/231 (0%)

Query: 1   MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQI-QPLQSNWILG 59
           +EKL  RSKSS AKSLGTIVSIAGAFVVTFY+GP +      I    Q+    Q  W++G
Sbjct: 125 LEKLDRRSKSSIAKSLGTIVSIAGAFVVTFYEGPTVFGIASHIKESHQLFHSPQFFWMIG 184

Query: 60  GFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLR 119
             +LAA+A++ SAWYILQ   LK+FPA+++++CY  FF+T+L+A+F+L VV + ++WK++
Sbjct: 185 ALFLAAEALMDSAWYILQTFILKKFPAVLIIICYLCFFNTVLSAIFALIVVEDRNSWKIK 244

Query: 120 LDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFL 179
            ++GL  I Y+AVIG AF  +L+ WCL R GPLYV++FKPLAI+F+ +M  II GD L L
Sbjct: 245 PNIGLATILYTAVIGLAFRISLVAWCLSRTGPLYVTLFKPLAIIFAVIMDAIILGDPLCL 304

Query: 180 GSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTED 230
           GSL+GA+IIV GFY VMWGKAKEE   DD    S E SS+ VPLL +  E+
Sbjct: 305 GSLIGAIIIVTGFYWVMWGKAKEEKAGDDSAVGSCESSSDNVPLLGDLAEE 355

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424736|ref|XP_002266139.1| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera] gi|296086519|emb|CBI32108.3| unnamed protein product [Vitis vinifera]

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 123/229 (53%), Positives = 158/229 (68%), Gaps = 7/229 (3%)

Query: 1   MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGG 60
           MEKL+ +  SS AKS+G +VS+AGAFVVTFYKGPPI+       S +QI   QS+W+LGG
Sbjct: 122 MEKLELKKSSSLAKSVGALVSVAGAFVVTFYKGPPIMFSSSFSDSSNQIFSSQSHWVLGG 181

Query: 61  FYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRL 120
           F LA +++L S WYILQA  LK+ PA++ +  +  FF +I++   SL    + SAW+L+L
Sbjct: 182 FLLADESLLASMWYILQATILKKHPAVLTITFFYCFFISIISLAISLVAERDPSAWRLKL 241

Query: 121 DVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLG 180
           DVGL A+ YSA++G     ++  WC+ RAGPL+ SMFKPL I+F+ VMGVI  GD L LG
Sbjct: 242 DVGLLAVLYSAIVGNVIRISMCTWCVRRAGPLFCSMFKPLGIVFAFVMGVIFSGDALHLG 301

Query: 181 SLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTE 229
           SLVGA+IIV GFY VMWGKAKE     + G       S KVPLLQN T+
Sbjct: 302 SLVGAIIIVTGFYAVMWGKAKEA----EEGRLE---CSRKVPLLQNQTD 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497781|ref|XP_003517736.1| PREDICTED: LOW QUALITY PROTEIN: auxin-induced protein 5NG4-like [Glycine max]

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 117/228 (51%), Positives = 152/228 (66%), Gaps = 1/228 (0%)

Query: 1   MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGG 60
           ME++ W+  SSQAK LGTIVSIAGAFVV  YKGPPI +  L  +S   +   Q NWILGG
Sbjct: 125 MEEVHWKHSSSQAKFLGTIVSIAGAFVVILYKGPPIFKTHLSNSSNKFLFSQQLNWILGG 184

Query: 61  FYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRL 120
            + A  +I+ S WYI QA    ++PA+  ++ +Q  FSTI   +F+L VV   + W+L+L
Sbjct: 185 MFCAGDSIVCSLWYIYQASVAYKYPAVTTIVFFQLLFSTIQCGVFALIVVQXSNEWELKL 244

Query: 121 DVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLG 180
           D+GL  I Y A+        L  WC+++AGPL+ SMFKP+AI+FS  MG I  GD L LG
Sbjct: 245 DIGLIGIVYQAIAATLIRYILCTWCVLKAGPLFCSMFKPVAIIFSVFMGAIFLGDDLSLG 304

Query: 181 SLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNST 228
           SL+GAVIIVIGFY V+WGK+ E+N I ++G  + E S   VPLLQN T
Sbjct: 305 SLIGAVIIVIGFYAVLWGKSIEDNKI-EKGVENLESSCHNVPLLQNRT 351

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502002|ref|XP_003519811.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 112/228 (49%), Positives = 147/228 (64%), Gaps = 1/228 (0%)

Query: 1   MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGG 60
           ME++ WR  SSQAK LGT++SI GAFVV  YKGPPI +     +S       Q NWILGG
Sbjct: 125 MEEVHWRHSSSQAKVLGTLISIGGAFVVILYKGPPIFKTHWSNSSNKLQFSQQINWILGG 184

Query: 61  FYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRL 120
            +    +I+ S WYI QA    +FPA+ V++ +Q  FSTI  A+F+L  V + + W+L+ 
Sbjct: 185 IFCVGDSIVCSLWYIYQASVAHKFPAVTVIVFFQLLFSTIQCAVFALIAVPDPTEWELKF 244

Query: 121 DVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLG 180
           D+GL  I Y A+        L  WC+++AGPL+ SMFKP++I+F+  M  I  GD L LG
Sbjct: 245 DIGLIGILYQAIAATLIRYILCTWCVLKAGPLFCSMFKPVSIIFTVFMAAIFLGDDLSLG 304

Query: 181 SLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNST 228
           SL+GAVIIVIGFY V+WGK+ EEN I  +G  + E S   VPLLQN T
Sbjct: 305 SLIGAVIIVIGFYAVLWGKSIEENKI-VKGVENLESSCHNVPLLQNRT 351

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497783|ref|XP_003517737.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  219 bits (558), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 111/228 (48%), Positives = 145/228 (63%), Gaps = 5/228 (2%)

Query: 1   MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGG 60
           ME++ WR  SSQAK LGTIVSI GAFVV  YKGPPI R      S       Q NWILGG
Sbjct: 125 MEEVHWRYFSSQAKVLGTIVSIGGAFVVILYKGPPIFRTHSSYTSNKLQFSAQPNWILGG 184

Query: 61  FYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRL 120
            +L A + L S WYI QA   K++PA+ V++ +Q+ FSTI   +F+L  V + + W+L+ 
Sbjct: 185 IFLVADSFLSSMWYIYQASVAKKYPAVTVIVFFQFLFSTIQCGVFALIAVRDPTEWELKF 244

Query: 121 DVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLG 180
           D GL  I Y A++      TL  WC+ RAGPL+ +MFKP+ I+F+  M  I  G+   LG
Sbjct: 245 DRGLSVILYQAIVATMLRYTLTTWCVHRAGPLFCAMFKPVGIIFTVSMSAIFLGENFGLG 304

Query: 181 SLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNST 228
           SL+GAVIIVIGFY V+WG ++EEN I++      E SS   PLLQ+ +
Sbjct: 305 SLIGAVIIVIGFYAVLWGNSREENKIENL-----ESSSHNAPLLQDRS 347

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099697|ref|XP_002311582.1| predicted protein [Populus trichocarpa] gi|222851402|gb|EEE88949.1| predicted protein [Populus trichocarpa]

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 110/231 (47%), Positives = 152/231 (65%)

Query: 1   MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGG 60
           MEKL W+S S+  KS GTIVS+AGAF+V +YKGPP++          ++   Q NWI+GG
Sbjct: 125 MEKLDWKSSSALVKSTGTIVSVAGAFIVCYYKGPPLLMAPSTSNLPHELLSQQQNWIIGG 184

Query: 61  FYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRL 120
             LA   ++ SAW I+QA+ LK++PA ++++ +  F  TIL+ +  L +  +  AW L+ 
Sbjct: 185 LLLAVDCVMASAWLIIQALILKKYPAELIVVFFYCFSVTILSTIVCLFMERDPGAWSLKP 244

Query: 121 DVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLG 180
            V   A+ YS V G+AF   +  WCL + GP++V+MFKPL I+ +  + +I   D L+LG
Sbjct: 245 TVRWIAVVYSGVFGSAFQVGVSTWCLHKTGPVFVAMFKPLGIVIAAAVSIICLRDTLYLG 304

Query: 181 SLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTEDT 231
           SLVGA +IVIGFY VMWGKAKEE    D G  S E SS+KVPLLQ+ TE+T
Sbjct: 305 SLVGATVIVIGFYSVMWGKAKEEKVGVDDGVRSFESSSQKVPLLQSHTEET 355

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086518|emb|CBI32107.3| unnamed protein product [Vitis vinifera]

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 113/230 (49%), Positives = 147/230 (63%), Gaps = 2/230 (0%)

Query: 1   MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQI-QPLQSNWILG 59
           ME+L WR  SS AKS+GT+VSIAGAF+VTFYKG PI+         DQ+    QSNW+ G
Sbjct: 120 MERLDWRG-SSMAKSMGTVVSIAGAFIVTFYKGSPILMTPSPSNFPDQLFLSQQSNWVFG 178

Query: 60  GFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLR 119
           G  LAA  ++ SAW ILQA  LK++PA +++  Y  FF  I +A  SL +     AW L+
Sbjct: 179 GLLLAADCVMSSAWLILQASILKKYPAELIINFYYCFFVAIQSAAASLIMERGPGAWSLK 238

Query: 120 LDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFL 179
                 A+ YS V G  F    + WC+ + GP++V+MFKP+ I+ +  MGVI  GD  ++
Sbjct: 239 PSTRFIAVMYSGVFGYVFQVGAITWCVHQKGPVFVAMFKPVGIVVAVAMGVIFLGDTFYM 298

Query: 180 GSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTE 229
           GSL+GA +IVIGFY VMWGKAKEE   +D G  S E +S+K PLLQN  E
Sbjct: 299 GSLIGATVIVIGFYSVMWGKAKEEKIDEDIGMRSLESTSQKAPLLQNYIE 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147778659|emb|CAN71719.1| hypothetical protein VITISV_034106 [Vitis vinifera]

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 113/230 (49%), Positives = 147/230 (63%), Gaps = 2/230 (0%)

Query: 1   MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQI-QPLQSNWILG 59
           ME+L WR  SS AKS+GT+VSIAGAF+VTFYKG PI+         DQ+    QSNW+ G
Sbjct: 99  MERLDWRG-SSMAKSMGTVVSIAGAFIVTFYKGSPILMTPSPSNFPDQLFLSQQSNWVFG 157

Query: 60  GFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLR 119
           G  LAA  ++ SAW ILQA  LK++PA +++  Y  FF  I +A  SL +     AW L+
Sbjct: 158 GLLLAADCVMSSAWLILQASILKKYPAELIINFYYCFFVAIQSAAASLIMERGPGAWSLK 217

Query: 120 LDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFL 179
                 A+ YS V G  F    + WC+ + GP++V+MFKP+ I+ +  MGVI  GD  ++
Sbjct: 218 PSTRFIAVMYSGVFGYVFQVGAITWCVHQKGPVFVAMFKPVGIVVAIAMGVIFLGDTFYM 277

Query: 180 GSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTE 229
           GSL+GA +IVIGFY VMWGKAKEE   +D G  S E +S+K PLLQN  E
Sbjct: 278 GSLIGATVIVIGFYSVMWGKAKEEKIDEDIGVRSLESTSQKAPLLQNYIE 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581162|ref|XP_002531394.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528987|gb|EEF30978.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 104/231 (45%), Positives = 153/231 (66%), Gaps = 3/231 (1%)

Query: 1   MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIV-RPRLDIASLDQIQPLQSNWILG 59
           MEKL  R+ SS AKS+GTI+S+ GAF++T+YKGP ++  P L+ +     QP  SNWI+G
Sbjct: 120 MEKLDGRTSSSLAKSMGTIISVGGAFILTYYKGPLVLLTPSLNSSHQLLTQP--SNWIIG 177

Query: 60  GFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLR 119
           G  LAA  ++ SAW I+QA+ LK +PA ++++ +  FF TIL+A+  L V  + SAW L 
Sbjct: 178 GLLLAADCVMTSAWIIIQALILKIYPAELIIVFFYCFFVTILSAIVCLVVERDPSAWSLI 237

Query: 120 LDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFL 179
            ++ L ++ YS V G+A    +  WCL + GP++VSMFKPL I+ +  +GVI  GD L+L
Sbjct: 238 PNIRLVSVLYSGVFGSALQVGISTWCLRQTGPVFVSMFKPLGIIIAAAVGVICLGDTLYL 297

Query: 180 GSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTED 230
           GS++G VI  +G+Y VMWG+A+E+          ++ S EKVPLLQ+   +
Sbjct: 298 GSIIGTVICGMGYYTVMWGQAREDGKQKPHDVERADTSDEKVPLLQDQDAE 348

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502250|gb|AFK39191.1| unknown [Medicago truncatula]

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 114/227 (50%), Positives = 151/227 (66%), Gaps = 4/227 (1%)

Query: 1   MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIA-SLDQIQPLQSNWILG 59
           ME++ WR  SSQAK++GTIVS+AGAFVV  YKGPPI++    I+ +  Q  P   NWILG
Sbjct: 127 MERIYWRHFSSQAKAIGTIVSMAGAFVVILYKGPPILKIHSSISYNTLQFSP-NLNWILG 185

Query: 60  GFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLR 119
           GF  A  ++L S WYI Q    K++PA+IV++ +Q  F TI   +++L VV + SAW+L+
Sbjct: 186 GFLCAGDSLLSSMWYIYQVSVTKKYPAVIVIVFFQVVFITIQTGVYALIVVRDPSAWELK 245

Query: 120 LDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFL 179
           LD+GL  I Y AV        L  W + RAGPL+ +MFKP+ I+F+  +G I FGD  +L
Sbjct: 246 LDMGLIVILYQAVAAIGIRYFLQTWSVQRAGPLFCAMFKPIGIIFTVFLGSIFFGDDFYL 305

Query: 180 GSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQN 226
           GSL+GAVIIV+GFY V WGKA EE    ++G  + E  S  VPLLQN
Sbjct: 306 GSLIGAVIIVVGFYAVQWGKASEEKV--EKGIENLETQSNVVPLLQN 350

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
TAIR|locus:2091363	367	UMAMIT41 "AT3G28050" [Arabidop	0.919	0.594	0.404	3.2e-42
TAIR|locus:2173752	370	UMAMIT37 "AT5G40230" [Arabidop	0.911	0.583	0.382	6.1e-39
TAIR|locus:2130344	347	UMAMIT38 "AT4G15540" [Arabidop	0.831	0.567	0.388	3.9e-37
TAIR|locus:2091393	358	UMAMIT47 "AT3G28080" [Arabidop	0.940	0.622	0.383	4.9e-37
TAIR|locus:2091368	355	UMAMIT44 "AT3G28130" [Arabidop	0.932	0.622	0.375	3.5e-36
TAIR|locus:2091383	360	UMAMIT46 "AT3G28070" [Arabidop	0.940	0.619	0.364	2.4e-35
TAIR|locus:2173737	339	UMAMIT42 "Usually multiple aci	0.886	0.619	0.378	1.1e-34
TAIR|locus:2102028	369	UMAMIT6 "Usually multiple acid	0.864	0.555	0.350	5.8e-34
TAIR|locus:2091338	353	UMAMIT45 "AT3G28100" [Arabidop	0.924	0.620	0.364	7.4e-34
UNIPROTKB|Q6J163	410	Q6J163 "Auxin-induced protein	0.856	0.495	0.328	9.5e-34

TAIR|locus:2091363 UMAMIT41 "AT3G28050" [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 89/220 (40%), Positives = 132/220 (60%)

Query:     1 MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGG 60
             ME + ++  SS AK LGT+VSI GAF+VT Y GP ++       SL + Q    NWILG 
Sbjct:   125 MESVSFKRTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVSL-RSQSTNPNWILGA 183

Query:    61 FYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSL-TVVTELSAWKLR 119
              +LA +   +  WYI+Q   ++E+PA   ++C+     +   A+ +L T   +L AWK++
Sbjct:   184 GFLAVEYFCVPLWYIVQTQIMREYPAEFTVVCFYSIGVSFWTALVTLFTEGNDLGAWKIK 243

Query:   120 LDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFL 179
              ++ L +I  S + G+    T+  W L   GPL+V+MFKPL+I  +  MGVI   D L++
Sbjct:   244 PNIALVSIVCSGLFGSCINNTIHTWALRIKGPLFVAMFKPLSIAIAVAMGVIFLRDSLYI 303

Query:   180 GSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSE 219
             GSL+GA +I IGFY VMWGKAKE   ++D    + E ++E
Sbjct:   304 GSLIGATVITIGFYTVMWGKAKEVALVEDDNKANHEEANE 343

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2173752 UMAMIT37 "AT5G40230" [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 85/222 (38%), Positives = 138/222 (62%)

Query:     1 MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVR------PRLDIASLDQIQPLQS 54
             ME++  RS ++QAK +GTIVSI+GA VV  YKGP ++       P   I+    +    S
Sbjct:   134 MEQIVLRSSATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDS 193

Query:    55 NWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELS 114
             +WI+GG  LA Q +L+S WYILQ   ++ +P  I ++      +T+++A   L    +L+
Sbjct:   194 SWIIGGLLLATQYLLVSVWYILQTRVMELYPEEITVVFLYNLCATLISAPVCLFAEKDLN 253

Query:   115 AWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFG 174
             ++ L+  V L ++ YS  + ++F + +  W L   GP+Y+S+FKPL+I+ +  MGV+  G
Sbjct:   254 SFILKPGVSLASVMYSGGLVSSFGSVIHTWGLHLKGPVYISLFKPLSIVIAVAMGVMFLG 313

Query:   175 DGLFLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSEL 216
             D L+LGS++G++I+ +GFY V+WGKA+E++     GT  S L
Sbjct:   314 DALYLGSVIGSLILSLGFYTVIWGKAREDSIKTVAGTEQSPL 355

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2130344 UMAMIT38 "AT4G15540" [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 80/206 (38%), Positives = 129/206 (62%)

Query:     1 MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGG 60
             ME++  RS ++QAK +GTIVSI+GA V+  YKGP ++     +A+       +S+WI+GG
Sbjct:   130 MEQVMLRSSATQAKIIGTIVSISGALVIVLYKGPKLL-----VAA--SFTSFESSWIIGG 182

Query:    61 FYLAAQAILISAWYILQAITLKEFPALI-VMLCYQYFFSTILAAMFSLTVVTELSAWKLR 119
               L  Q +L+S W+ILQ   ++ +P  I V+ CY    +T+++    L V  +L++W+L+
Sbjct:   183 LLLGLQFLLLSVWFILQTHIMEIYPEEIAVVFCYN-LCATLISGTVCLLVEKDLNSWQLK 241

Query:   120 LDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFL 179
                 L ++ YS +   +  + +  W L   GP+Y+S+FKPL+I  +  M  I  GD L L
Sbjct:   242 PGFSLASVIYSGLFDTSLGSVIHTWGLHVKGPVYISLFKPLSIAIAVAMAAIFLGDTLHL 301

Query:   180 GSLVGAVIIVIGFYVVMWGKAKEENT 205
             GS++G+VI+  GFY V+WGKA+E++T
Sbjct:   302 GSVIGSVILSFGFYTVIWGKAREDST 327

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091393 UMAMIT47 "AT3G28080" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 91/237 (38%), Positives = 133/237 (56%)

Query:     1 MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIV----RPRLDIASLDQ-IQPLQSN 55
             MEK+ ++ +SS AK +GTI+S+ GAFVV FY GP +      P L+   L   +   +S+
Sbjct:   127 MEKVSFKERSSVAKVMGTILSLIGAFVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSKSD 186

Query:    56 WILGGFYLAAQAILISAWYILQAITLKEFP-ALIVMLCYQYFFSTILAAMFSLTVV-TEL 113
             W++GG  L  Q I +S  +ILQ   ++E+P A  V + Y    S I+ +M  L V     
Sbjct:   187 WLIGGAILTIQGIFVSVSFILQTHIMREYPEAFTVSILYILCIS-IVTSMIGLVVEKNNP 245

Query:   114 SAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIF 173
             S W +  D+ LF I  + +I + +   +  W +    PLY+++FKPL+IL + VMG I  
Sbjct:   246 SIWIIHFDITLFTIVTTGIITSVYYV-IHSWAIRHKRPLYLAIFKPLSILIAVVMGTIFL 304

Query:   174 GDGLFLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTED 230
              D L+LG L+G ++I +GFYVVMWGKA EE     +    S    EK PLL +   D
Sbjct:   305 NDSLYLGCLIGGILITLGFYVVMWGKANEE-----KNKLLSFSGKEKTPLLLSGKND 356

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2091368 UMAMIT44 "AT3G28130" [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 89/237 (37%), Positives = 131/237 (55%)

Query:     1 MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLD-IASLDQIQ-PLQSN--- 55
             MEK  ++ KSS AK +GTIVS+ GA VV  Y GP +  P       L Q+  PL S+   
Sbjct:   126 MEKASFKEKSSVAKMVGTIVSLVGALVVVLYHGPRVFTPSSPPFPQLRQLLLPLSSSNSD 185

Query:    56 WILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVV-TELS 114
             WI+GG  LA +  L+   +ILQA  +K +PA   +  + +  ++IL ++  +       S
Sbjct:   186 WIIGGCLLAIKDTLVPVAFILQAHIMKLYPAPFTVSFFYFLIASILTSLIGIVAEKNNPS 245

Query:   115 AWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFG 174
              W +  D+ L  I    +    +   + LW +   GP+Y+++F+PL+IL + +MG I  G
Sbjct:   246 IWIIHFDITLVCIVVGGIFNPGYYA-IHLWAVRNKGPVYLAIFRPLSILIAVIMGAIFLG 304

Query:   175 DGLFLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELS-SEKVPLLQNSTED 230
             D  +LGSLVG ++I +GFY VMWGKAKE  T          LS SE+ PLL  + +D
Sbjct:   305 DSFYLGSLVGGILISLGFYTVMWGKAKEGKT--------QFLSLSEETPLLDENIDD 353

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091383 UMAMIT46 "AT3G28070" [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 86/236 (36%), Positives = 129/236 (54%)

Query:     1 MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPI-VRPRLDIASLDQIQP----LQSN 55
             MEK+ ++ +SS AK +GTI+S+ GA VV FY GP + +       +  Q  P      S+
Sbjct:   130 MEKVSFKERSSLAKLMGTILSLIGALVVIFYHGPRVFLASSPPYVNFRQFSPPLSSSNSD 189

Query:    56 WILGGFYLAAQAILISAWYILQAITLKEFPALI-VMLCYQYFFSTILAAMFSLTVVTELS 114
             W++GG  L  Q I +S  +ILQA  +  +PA   V   Y    S + + +  +      S
Sbjct:   190 WLIGGALLTMQGIFVSVSFILQAHIMSVYPAAFRVSFLYTVCVSIVTSTIGLVVEKNNPS 249

Query:   115 AWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFG 174
              W +  D+ L  I   A++ + +   +  W +   GPLY+++FKPL+IL + VMG I   
Sbjct:   250 VWIIHFDITLITIVTMAIVTSVYYV-IHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLN 308

Query:   175 DGLFLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTED 230
             D L+LG L+G ++I +GFY VMWGKA EE    D+ ++S +   EK PLL N   D
Sbjct:   309 DSLYLGCLIGGILITLGFYAVMWGKANEEK---DQLSFSEK---EKTPLLLNRKND 358

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2173737 UMAMIT42 "Usually multiple acids move in and out Transporters 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 86/227 (37%), Positives = 127/227 (55%)

Query:     1 MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGG 60
             ME +    KSS AK LGTI+SI GA VVT Y GP ++                S+WI+GG
Sbjct:   126 MENISLGKKSSVAKVLGTILSIIGALVVTLYHGPMLMSSH-------------SDWIIGG 172

Query:    61 FYLAAQAILISAWYILQAITLKEFP-ALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLR 119
               LA Q IL+S  Y++ A T+  +P A++V L +    + + A +  L       AW +R
Sbjct:   173 GLLALQYILVSVSYLVMAHTMGRYPSAVVVTLVHNVCIAVVCAFVSLLAEKDNPKAWVIR 232

Query:   120 LDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFL 179
              D+ L  +  + ++ + +   +  W +   GP+Y+SMFKPL+IL + V   I  G+ L+L
Sbjct:   233 FDITLITVVATGILNSGYYV-IHTWAVSHKGPVYLSMFKPLSILIAAVSTFIFLGESLYL 291

Query:   180 GSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQN 226
             GS++G ++I IGFY+V+WGKAKE+  +D  G   S   S   PLL N
Sbjct:   292 GSVMGGILISIGFYMVLWGKAKEDK-VDIIGAIESS-PSHNAPLLDN 336

GO:0016020 "membrane" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2102028 UMAMIT6 "Usually multiple acids move in and out Transporters 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 74/211 (35%), Positives = 124/211 (58%)

Query:     1 MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQS-----N 55
             +EK++W+ K   AK +GTIVS+AG+ V+T YKGP I +P L+I +   I+P ++     N
Sbjct:   123 IEKVEWKRKDGIAKVVGTIVSVAGSLVITLYKGPTIYQPSLNIVN-QTIKPEEAEEENKN 181

Query:    56 WILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSA 115
             W LG   L    +  S+W +LQ+  LK++PA    + Y  FF+ I     S     +L  
Sbjct:   182 WTLGCLCLMGHCLCWSSWIVLQSPLLKKYPARFSFVSYSCFFAVIQFFGISAYFERDLER 241

Query:   116 WKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGD 175
             WK+     L+A+ Y+ ++G+A +  + ++ + R GPL+VS + PL  L + V+  +  G+
Sbjct:   242 WKIISGGELYALLYTGLVGSAMVFAIQIYVVERGGPLFVSAYLPLQTLIAAVLATLALGE 301

Query:   176 GLFLGSLVGAVIIVIGFYVVMWGKAKEENTI 206
               +LG L+GA++I+ G Y+V+ GK+ E   +
Sbjct:   302 HFYLGGLIGAILIMSGLYLVVMGKSWENQAL 332

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2091338 UMAMIT45 "AT3G28100" [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 85/233 (36%), Positives = 129/233 (55%)

Query:     1 MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIV----RPRLDIASLDQ-IQPLQSN 55
             MEK+ ++ +SS AK +GTI+S+ GA VV  Y GP +      P ++   L   +    S+
Sbjct:   127 MEKVSFKERSSVAKVMGTILSLIGALVVVLYHGPRVFVASSPPYINFRQLSPPLSSSNSD 186

Query:    56 WILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFS-TILAAMFSLTVV-TEL 113
             W++GG  L  + I +S  +ILQA  +  +PA   +  + Y  S +I+ +M  L V     
Sbjct:   187 WLIGGALLTIRDIFVSVSFILQAKIMSTYPAAFTV-SFLYIVSVSIVTSMIGLVVEKNNP 245

Query:   114 SAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIF 173
             S W +R D+ L  I   A+I + +   +  W +   GPLY+++FKPL+IL + VM  +  
Sbjct:   246 SVWIIRFDITLITIVTMAIITSVYYV-IHSWTVRHKGPLYLAIFKPLSILIAVVMSAVFL 304

Query:   174 GDGLFLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQN 226
              D L+LG L+G ++I +GFY VMWGKA EE    D+    S    E+ PLL N
Sbjct:   305 NDSLYLGCLIGGLLITLGFYAVMWGKANEEK---DQLLLVS--GKERTPLLLN 352

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q6J163 Q6J163 "Auxin-induced protein 5NG4" [Pinus taeda (taxid:3352)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 70/213 (32%), Positives = 120/213 (56%)

Query:     1 MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIV---RPRLDI-ASL------DQIQ 50
             +EK+    +   AK +GT+  ++GA ++T YKGPPI    RP L++ AS       + + 
Sbjct:   132 LEKVHISRRDGLAKIIGTVACVSGATIITLYKGPPITHIWRPNLEVTASYFKAFQGNDLS 191

Query:    51 PLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVV 110
                 NW LG  YL    +  S W +LQA  LK +PA + +  +  FF  I   + +    
Sbjct:   192 AKSENWTLGCIYLLGNCLAWSGWIVLQAPVLKRYPARLSVTSFTCFFGVIQFLIIAAFFE 251

Query:   111 TELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGV 170
             T+L  WK+     LF I Y+  + +    ++ +WC+ R GP++V++++P+  +   +M  
Sbjct:   252 TDLEHWKIHSGGELFTILYAGFVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAIMAS 311

Query:   171 IIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEE 203
             II G+  +LG + GA++I+IG Y+V+WGK++E+
Sbjct:   312 IILGEQFYLGGIFGAILIIIGLYLVLWGKSEEK 344

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0005938 "cell cortex" evidence=IDA

GO:0006810 "transport" evidence=NAS

GO:0009734 "auxin mediated signaling pathway" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00028878001 SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (364 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	237
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	2e-39
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	0.001
pfam00892	126	pfam00892, EamA, EamA-like transporter family	0.002

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score =  139 bits (351), Expect = 2e-39
 Identities = 90/236 (38%), Positives = 129/236 (54%), Gaps = 12/236 (5%)

Query: 1   MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIV----RPRLDIASLDQ-IQPLQSN 55
           MEK+ ++ +SS AK +GTI+S+ GA VV FY GP +      P L+   L   +    S+
Sbjct: 127 MEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSD 186

Query: 56  WILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTV-VTELS 114
           W++GG  L  Q I +S  +ILQA  + E+PA   +        +I+ +M  L V     S
Sbjct: 187 WLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPS 246

Query: 115 AWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFG 174
            W +  D+ L  I   A+I + +   +  W +   GPLY+++FKPL+IL + VMG I   
Sbjct: 247 VWIIHFDITLITIVTMAIITSVYYV-IHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLN 305

Query: 175 DGLFLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTED 230
           D L+LG L+G ++I +GFY VMWGKA EE    D+    S    EK PLL N   D
Sbjct: 306 DSLYLGCLIGGILITLGFYAVMWGKANEEK---DQLLSFSG--KEKTPLLLNGKND 356

Length = 358

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 5/153 (3%)

Query: 50  QPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTV 109
                   L G  LA  A L+ A Y      L     + + L  Q   + +L  +F L+ 
Sbjct: 145 GGGGGILSLLGLLLALAAALLWALYTALVKRLSRLGPVTLALLLQLLLALLLLLLFFLSG 204

Query: 110 VTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMG 169
                  +         + Y  V        L  + L   G   V++   L  +F+ ++G
Sbjct: 205 FGAPILSR-----AWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLG 259

Query: 170 VIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKE 202
           V++ G+ L    L+GA ++V+G  +      + 
Sbjct: 260 VLLLGEPLSPAQLLGAALVVLGVLLASLRARRR 292

Length = 292

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 23/127 (18%), Positives = 56/127 (44%), Gaps = 4/127 (3%)

Query: 71  SAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYS 130
           + +++     L+     +    Y++  + IL  +    +    +   L+    + A+ Y 
Sbjct: 4   ALYFVFSKKLLERISP-LTFTAYRFLIAGILLILLLFLLRKPFALLSLK---AILALLYL 59

Query: 131 AVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVI 190
            + G A    L  + L        S+   L+ +F+ ++ V++ G+ L L  L+G V+I++
Sbjct: 60  GLFGTALGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIVLILL 119

Query: 191 GFYVVMW 197
           G  +++ 
Sbjct: 120 GVLLILL 126

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	237
PLN00411	358	nodulin MtN21 family protein; Provisional	99.98
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.94
PRK11689	295	aromatic amino acid exporter; Provisional	99.92
PRK11272	292	putative DMT superfamily transporter inner membran	99.91
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.9
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.89
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.88
PRK15430	296	putative chloramphenical resistance permease RarD;	99.86
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.84
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.82
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.8
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.76
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.65
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.6
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.58
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.55
COG2510	140	Predicted membrane protein [Function unknown]	99.49
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.49
KOG2765	416	consensus Predicted membrane protein [Function unk	99.41
COG2962	293	RarD Predicted permeases [General function predict	99.4
KOG2766	336	consensus Predicted membrane protein [Function unk	99.33
PRK15430	296	putative chloramphenical resistance permease RarD;	99.32
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	99.24
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.2
KOG1580	337	consensus UDP-galactose transporter related protei	99.2
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.19
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.1
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.05
PLN00411	358	nodulin MtN21 family protein; Provisional	99.01
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.96
PRK11272	292	putative DMT superfamily transporter inner membran	98.96
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.94
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.9
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.87
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.85
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.82
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	98.82
PRK11689	295	aromatic amino acid exporter; Provisional	98.78
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	98.75
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	98.7
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	98.64
KOG1581	327	consensus UDP-galactose transporter related protei	98.63
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.57
COG2962	293	RarD Predicted permeases [General function predict	98.47
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	98.41
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.4
KOG3912	372	consensus Predicted integral membrane protein [Gen	98.31
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.28
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	98.27
KOG1582	367	consensus UDP-galactose transporter related protei	98.21
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.07
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	98.07
PRK09541	110	emrE multidrug efflux protein; Reviewed	98.06
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	98.06
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	97.95
KOG1443	349	consensus Predicted integral membrane protein [Fun	97.93
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.87
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	97.81
PRK11431	105	multidrug efflux system protein; Provisional	97.78
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.78
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.73
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.71
COG2076	106	EmrE Membrane transporters of cations and cationic	97.68
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.58
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.41
PRK13499	345	rhamnose-proton symporter; Provisional	97.3
KOG4510	346	consensus Permease of the drug/metabolite transpor	97.29
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.08
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	97.06
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	96.84
PRK13499	345	rhamnose-proton symporter; Provisional	96.68
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	96.16
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	95.67
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	95.65
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	95.17
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	94.88
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	94.58
KOG2922	335	consensus Uncharacterized conserved protein [Funct	94.09
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	93.49
PRK02237	109	hypothetical protein; Provisional	93.11
KOG2765	416	consensus Predicted membrane protein [Function unk	92.61
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	92.24
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	92.02
KOG1580	337	consensus UDP-galactose transporter related protei	91.08
PF04342	108	DUF486: Protein of unknown function, DUF486; Inter	90.04
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	89.93
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	87.37
COG3169	116	Uncharacterized protein conserved in bacteria [Fun	86.96
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	86.84
TIGR02840	206	spore_YtaF putative sporulation protein YtaF. This	85.6
COG3086	150	RseC Positive regulator of sigma E activity [Signa	84.91
KOG2922	335	consensus Uncharacterized conserved protein [Funct	82.16
PF04246	135	RseC_MucC: Positive regulator of sigma(E), RseC/Mu	82.0
PF15099	129	PIRT: Phosphoinositide-interacting protein family	81.76
KOG3912	372	consensus Predicted integral membrane protein [Gen	81.75
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	80.88

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.98  E-value=5.6e-31  Score=238.23  Aligned_cols=225  Identities=38%  Similarity=0.685  Sum_probs=167.8

Q ss_pred             CccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCC-cccc--ccc--cCcccCcchhhHHHHHHHHHHHHHHHH
Q 026497            1 MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRL-DIAS--LDQ--IQPLQSNWILGGFYLAAQAILISAWYI   75 (237)
Q Consensus         1 ~e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~-~~~~--~~~--~~~~~~~~~~G~ll~llaa~~~a~y~v   75 (237)
                      +|++.+|||+++++++|++++++|+.++..++++.....++ ++-+  .+.  ......++..|++++++++++||+|++
T Consensus       127 ~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~i  206 (358)
T PLN00411        127 MEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFI  206 (358)
T ss_pred             hchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence            47888999999999999999999999887555432100000 0000  000  011122345699999999999999999


Q ss_pred             HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccc-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhh
Q 026497           76 LQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTE-LSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYV  154 (237)
Q Consensus        76 ~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~-~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~  154 (237)
                      ++|+..+++++....++|++.++++.+.+.++..+++ ...|...+......++|.+++ +.++|.+|++++++.||+++
T Consensus       207 l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~a  285 (358)
T PLN00411        207 LQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYL  285 (358)
T ss_pred             HHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchHH
Confidence            9999988887566888999999988888777766542 223322222335568898876 67899999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcccccccccccccCCCCCccccccccccCCCcccc
Q 026497          155 SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTEDT  231 (237)
Q Consensus       155 s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (237)
                      +++.+++|++++++|++++||++++.+++|+++|+.|++++.+++++|.++.++.|     ..+|+-|++-|..||.
T Consensus       286 s~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  357 (358)
T PLN00411        286 AIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQLLSF-----SGKEKTPLLLNGKNDQ  357 (358)
T ss_pred             HHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCc-----cccccchhhhhccccc
Confidence            99999999999999999999999999999999999999999887655533333222     2456677766655554

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.94  E-value=1.4e-25  Score=198.20  Aligned_cols=183  Identities=15%  Similarity=0.144  Sum_probs=145.5

Q ss_pred             ccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026497            2 EKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITL   81 (237)
Q Consensus         2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~   81 (237)
                      +++++|||+++++++|++++++|+.++. ..+.                .+......|+++.++++++|++|++++||..
T Consensus       104 ~~~~l~e~~~~~~~~~~~l~~~Gv~ll~-~~~~----------------~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~  166 (299)
T PRK11453        104 GAFTFGERLQGKQLAGIALAIFGVLVLI-EDSL----------------NGQHVAMLGFMLTLAAAFSWACGNIFNKKIM  166 (299)
T ss_pred             HHHHhcCcCcHHHHHHHHHHHHhHHHhc-cccC----------------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5678999999999999999999998875 2110                0111124699999999999999999999986


Q ss_pred             hhcch--HHHHHHHHHHHHHHHHHHHHHHhccccc---cccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhh
Q 026497           82 KEFPA--LIVMLCYQYFFSTILAAMFSLTVVTELS---AWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSM  156 (237)
Q Consensus        82 ~~~~~--~~~~t~~~~~~g~l~~~~~~~~~~~~~~---~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~  156 (237)
                      ++.++  ....+.++++.+.+.+...+...+++..   .+...+...|..++|+++++|+++|.+|++++++.++++++.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~  246 (299)
T PRK11453        167 SHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAP  246 (299)
T ss_pred             cccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            65432  3455667777776666655544443211   111112246889999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhccccc
Q 026497          157 FKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK  201 (237)
Q Consensus       157 ~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~  201 (237)
                      +.+++|++++++|++++||++++.+++|+++|+.|+++..++++.
T Consensus       247 ~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~~  291 (299)
T PRK11453        247 LSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLRW  291 (299)
T ss_pred             HHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchhh
Confidence            999999999999999999999999999999999999998877653

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.92  E-value=4.2e-24  Score=188.63  Aligned_cols=182  Identities=9%  Similarity=0.032  Sum_probs=134.7

Q ss_pred             ccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026497            2 EKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITL   81 (237)
Q Consensus         2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~   81 (237)
                      .++++|||+++++++|++++++|++++.. .+.....        ++...+..+...|++++++++++||+|+++.||+.
T Consensus       109 ~~~~~~e~~~~~~~~g~~l~~~Gv~li~~-~~~~~~~--------~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~  179 (295)
T PRK11689        109 AVLFNGQKANWLLIPGLLLALAGVAWVLG-GDNGLSL--------AELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYA  179 (295)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHhHhheec-CCccchh--------hhhhhccccChHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            35678999999999999999999988752 2111100        00000001224699999999999999999999987


Q ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhhH
Q 026497           82 KEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLA  161 (237)
Q Consensus        82 ~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l~  161 (237)
                      ++++ +....   ...+++.+.+.....+.+...+   +...|..++|.+ ++++++|.+|++++|+.+|++++.+.+++
T Consensus       180 ~~~~-~~~~~---~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~l~~~~-~~t~~~~~l~~~al~~~~a~~~s~~~~l~  251 (295)
T PRK11689        180 RGKN-GITLF---FILTALALWIKYFLSPQPAMVF---SLPAIIKLLLAA-AAMGFGYAAWNVGILHGNMTLLATASYFT  251 (295)
T ss_pred             CCCC-chhHH---HHHHHHHHHHHHHHhcCccccC---CHHHHHHHHHHH-HHHHHHHHHHHHHHHccCHHHHHHHHHhH
Confidence            6664 55432   2333444444333322211111   124577888888 48999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcccc
Q 026497          162 ILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA  200 (237)
Q Consensus       162 Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~  200 (237)
                      |++++++|++++||++++.+++|+++|+.|+++..++++
T Consensus       252 Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~  290 (295)
T PRK11689        252 PVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR  290 (295)
T ss_pred             HHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence            999999999999999999999999999999988766543

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.91  E-value=4.8e-23  Score=181.55  Aligned_cols=172  Identities=16%  Similarity=0.204  Sum_probs=142.7

Q ss_pred             eeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 026497            6 WRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP   85 (237)
Q Consensus         6 lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~~~~~   85 (237)
                      +|||+++++++|++++++|+.++.. ++.                 . .....|+++.++++++||+|++..||..++  
T Consensus       117 ~~e~~~~~~~~~~~la~~Gv~ll~~-~~~-----------------~-~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~--  175 (292)
T PRK11272        117 FGIRTRKLEWLGIAIGLAGIVLLNS-GGN-----------------L-SGNPWGAILILIASASWAFGSVWSSRLPLP--  175 (292)
T ss_pred             hcccCchhHHHHHHHHHHhHHHHhc-Ccc-----------------c-ccchHHHHHHHHHHHHHHHHHHHHHhcCCC--
Confidence            6999999999999999999988752 110                 1 122469999999999999999999987543  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhhHHHHH
Q 026497           86 ALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFS  165 (237)
Q Consensus        86 ~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a  165 (237)
                      ++...+++++.++++.+.+.....+.+..  ...+...|..++|+++++|+++|.+|++++++.++++++.+.+++|+++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a  253 (292)
T PRK11272        176 VGMMAGAAEMLAAGVVLLIASLLSGERLT--ALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVA  253 (292)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHcCCccc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence            24667789999999988887665433211  1112246889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcccc
Q 026497          166 TVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA  200 (237)
Q Consensus       166 ~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~  200 (237)
                      ++++++++||++++.+++|+++|+.|+++..++++
T Consensus       254 ~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~  288 (292)
T PRK11272        254 VLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY  288 (292)
T ss_pred             HHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999998766544

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.90  E-value=2.7e-22  Score=176.87  Aligned_cols=170  Identities=11%  Similarity=0.081  Sum_probs=133.4

Q ss_pred             eccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 026497            7 RSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPA   86 (237)
Q Consensus         7 rer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~~~~~~   86 (237)
                      +||++  +..++.++++|+.++. ..+.+                .+.....|+++.++++++|+.|+++.||..++++ 
T Consensus       116 ~~~~~--~~~~~~i~~~Gv~li~-~~~~~----------------~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~-  175 (293)
T PRK10532        116 SRRPV--DFVWVVLAVLGLWFLL-PLGQD----------------VSHVDLTGAALALGAGACWAIYILSGQRAGAEHG-  175 (293)
T ss_pred             cCChH--HHHHHHHHHHHHheee-ecCCC----------------cccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-
Confidence            35554  4567788999998875 21211                1112346999999999999999999999877764 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhhHHHHHH
Q 026497           87 LIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFST  166 (237)
Q Consensus        87 ~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~  166 (237)
                      +... .++.+++++++.++....+.. ..+   ....|..++|+|+++|+++|.+|++++++.+|++++.+.+++|++++
T Consensus       176 ~~~~-~~~~~~~~~~l~~~~~~~~~~-~~~---~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~  250 (293)
T PRK10532        176 PATV-AIGSLIAALIFVPIGALQAGE-ALW---HWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAA  250 (293)
T ss_pred             chHH-HHHHHHHHHHHHHHHHHccCc-ccC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHH
Confidence            5665 567777887777776543321 111   11346677899999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcchhhHHHHHHHHHHHhhhhccccc
Q 026497          167 VMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK  201 (237)
Q Consensus       167 ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~  201 (237)
                      ++|++++||++++.+++|+++|+.|++...++.++
T Consensus       251 l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~  285 (293)
T PRK10532        251 VSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR  285 (293)
T ss_pred             HHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999888766544

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.89  E-value=1.3e-22  Score=179.41  Aligned_cols=179  Identities=15%  Similarity=0.120  Sum_probs=136.5

Q ss_pred             ccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026497            2 EKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITL   81 (237)
Q Consensus         2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~   81 (237)
                      +++++|||+++++++|++++++|+++.. . + +                . +....|+++.++++++|++|+++.||..
T Consensus       109 ~~~~~~e~~~~~~~~~l~l~~~Gv~l~~-~-~-~----------------~-~~~~~G~~~~l~a~~~~a~~~v~~k~~~  168 (302)
T TIGR00817       109 SAFFLGQEFPSTLWLSLLPIVGGVALAS-D-T-E----------------L-SFNWAGFLSAMISNITFVSRNIFSKKAM  168 (302)
T ss_pred             HHHHhCCCCcHHHHHHHHHHHHHHhhhc-C-C-c----------------c-cccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5688999999999999999999997643 1 1 0                1 1224699999999999999999999987


Q ss_pred             h--hcchHHHHHHHHHHHHHHHHHHHHHHhccccc---ccccc-chhhHHHHHHHHHHHHHHHHH----HHHHHHhccCh
Q 026497           82 K--EFPALIVMLCYQYFFSTILAAMFSLTVVTELS---AWKLR-LDVGLFAIAYSAVIGAAFLTT----LLLWCLMRAGP  151 (237)
Q Consensus        82 ~--~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~---~~~~~-~~~~~~~llylgi~~t~la~~----l~~~~l~~~~a  151 (237)
                      +  ++ ++.+++.|++.++++.+.|+....++...   .+... +......+.+..++.+..++.    ++++++++.+|
T Consensus       169 ~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa  247 (302)
T TIGR00817       169 TIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSP  247 (302)
T ss_pred             ccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence            7  66 47999999999999999998876653211   11000 000011122223333333444    55589999999


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhccccc
Q 026497          152 LYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK  201 (237)
Q Consensus       152 ~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~  201 (237)
                      ++++++.+++|++++++|++++||++++.+++|+++++.|+++..+.|++
T Consensus       248 ~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~  297 (302)
T TIGR00817       248 LTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQ  297 (302)
T ss_pred             hHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999998766543

specificities overlap.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.88  E-value=9.7e-22  Score=169.24  Aligned_cols=168  Identities=20%  Similarity=0.234  Sum_probs=140.9

Q ss_pred             ccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026497            2 EKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITL   81 (237)
Q Consensus         2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~   81 (237)
                      ..+++|||+++++++|++++++|+.++. .++.                  ......|+++.++++++|+.|.++.|+..
T Consensus        91 ~~l~~~e~~~~~~~~gi~i~~~Gv~li~-~~~~------------------~~~~~~G~~~~l~a~~~~a~~~~~~k~~~  151 (260)
T TIGR00950        91 SDLMGKERPRKLVLLAAVLGLAGAVLLL-SDGN------------------LSINPAGLLLGLGSGISFALGTVLYKRLV  151 (260)
T ss_pred             HHHHccCCCcHHHHHHHHHHHHhHHhhc-cCCc------------------ccccHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            3578999999999999999999998875 2210                  11235799999999999999999999987


Q ss_pred             hhcc-hHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhh
Q 026497           82 KEFP-ALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPL  160 (237)
Q Consensus        82 ~~~~-~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l  160 (237)
                      ++.+ .+...+.+++.++++.+.+.....++.. .+   ....|..++|++++++.++|.+|++++++.++++++.+.++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~  227 (260)
T TIGR00950       152 KKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALA  227 (260)
T ss_pred             hcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            7653 2346666889999988888876544322 11   22457789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCcchhhHHHHHHHHHHH
Q 026497          161 AILFSTVMGVIIFGDGLFLGSLVGAVIIVIGF  192 (237)
Q Consensus       161 ~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv  192 (237)
                      +|+++++++++++||++++.+++|+++++.|+
T Consensus       228 ~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       228 EPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999986

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.86  E-value=1e-20  Score=167.06  Aligned_cols=169  Identities=11%  Similarity=0.086  Sum_probs=122.9

Q ss_pred             ccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026497            2 EKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITL   81 (237)
Q Consensus         2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~   81 (237)
                      +.+++|||+++++++|++++++|++++....+                   + .    .++.++++++||+|+++.|+..
T Consensus       117 ~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~-------------------~-~----~~~~l~aa~~~a~~~i~~r~~~  172 (296)
T PRK15430        117 GMIFLGERFRRMQWLAVILAICGVLVQLWTFG-------------------S-L----PIIALGLAFSFAFYGLVRKKIA  172 (296)
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC-------------------C-c----cHHHHHHHHHHHHHHHHHHhcC
Confidence            46788999999999999999999988752110                   1 1    2467889999999999988864


Q ss_pred             hhc-chHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhh
Q 026497           82 KEF-PALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPL  160 (237)
Q Consensus        82 ~~~-~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l  160 (237)
                      ++. ......+.|++.++.....+..   ..+...+.. .+..+..+++.+.+.+.++|.+|++++++.+|++++.+.++
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l  248 (296)
T PRK15430        173 VEAQTGMLIETMWLLPVAAIYLFAIA---DSSTSHMGQ-NPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYI  248 (296)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHc---cCCcccccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            321 1234555666666654433221   111111111 11123344444344788999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcc
Q 026497          161 AILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG  198 (237)
Q Consensus       161 ~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~  198 (237)
                      +|++++++|++++||++++.+++|+++|+.|+.+....
T Consensus       249 ~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~  286 (296)
T PRK15430        249 GPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD  286 (296)
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998887766544

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.84  E-value=1.6e-20  Score=164.60  Aligned_cols=171  Identities=18%  Similarity=0.209  Sum_probs=127.8

Q ss_pred             ccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026497            2 EKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITL   81 (237)
Q Consensus         2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~   81 (237)
                      .++++|||+++++++|+.++++|++++.. ++  .               .. ....|+.+.++++++|++|++..|+..
T Consensus       107 ~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~-~~--~---------------~~-~~~~g~~~~l~aal~~a~~~i~~k~~~  167 (281)
T TIGR03340       107 ATLTLGETLSPLAWLGILIITLGLLVLGL-SR--F---------------AQ-HRRKAYAWALAAALGTAIYSLSDKAAA  167 (281)
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHHHhc-cc--c---------------cc-cchhHHHHHHHHHHHHHHhhhhccccc
Confidence            45789999999999999999999988752 11  0               01 123588899999999999999988754


Q ss_pred             hhcch---HHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhh
Q 026497           82 KEFPA---LIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFK  158 (237)
Q Consensus        82 ~~~~~---~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~  158 (237)
                      ++.++   ....+.+++..+++.+.+.....+...  +. .....+..++|.+.++++++|.+|++++++.++++++.+.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~  244 (281)
T TIGR03340       168 LGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS--MF-PYARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALR  244 (281)
T ss_pred             cchhcccccHHHHHHHHHHHHHHHHHHHHHHhccc--hh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeec
Confidence            43321   122334444443333322222112211  11 1123466788999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhh
Q 026497          159 PLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYV  194 (237)
Q Consensus       159 ~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l  194 (237)
                      +++|++++++|++++||++++.+++|+++|+.|+++
T Consensus       245 ~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       245 NTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             ccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            999999999999999999999999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.82  E-value=2.5e-19  Score=160.26  Aligned_cols=190  Identities=17%  Similarity=0.202  Sum_probs=149.1

Q ss_pred             ccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026497            2 EKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITL   81 (237)
Q Consensus         2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~   81 (237)
                      .++++|+|+++.+++|++++++|+.+++..+....           +++.++++...||++++++++.||+|+++.++..
T Consensus       123 S~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~-----------~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v  191 (334)
T PF06027_consen  123 SFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSG-----------SDSSSGSNPILGDLLALLGAILYAVSNVLEEKLV  191 (334)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHhhhhheeeeccccc-----------ccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhc
Confidence            35789999999999999999999988865432110           1112345678999999999999999999999999


Q ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhhH
Q 026497           82 KEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLA  161 (237)
Q Consensus        82 ~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l~  161 (237)
                      ++.+ ...+.++..++|.++..+....+|.+... ..+++......+....++..+-|.+....++..+|+...+-..+.
T Consensus       192 ~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~-~~~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTs  269 (334)
T PF06027_consen  192 KKAP-RVEFLGMLGLFGFIISGIQLAILERSGIE-SIHWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTS  269 (334)
T ss_pred             ccCC-HHHHHHHHHHHHHHHHHHHHHheehhhhh-ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHh
Confidence            9885 78889999999999998888777754210 111221222222222346677888899999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcccccccc
Q 026497          162 ILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEEN  204 (237)
Q Consensus       162 Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~~~~  204 (237)
                      .+++++.+++++|+++++..++|.++|++|+.+....++++++
T Consensus       270 d~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~  312 (334)
T PF06027_consen  270 DFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE  312 (334)
T ss_pred             hHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence            9999999999999999999999999999999988776654433

Some of the sequences in this family are annotated as putative membrane proteins.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.80  E-value=1.1e-18  Score=157.83  Aligned_cols=176  Identities=14%  Similarity=0.116  Sum_probs=139.7

Q ss_pred             ccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026497            2 EKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITL   81 (237)
Q Consensus         2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~   81 (237)
                      +++++|||+++++++|++++++|+++.+. +  +                .+. ...|+++.++++++|++|+++.|+..
T Consensus       158 s~~~l~ek~s~~~~l~l~l~v~Gv~l~~~-~--~----------------~~~-~~~G~~~~l~s~~~~a~~~i~~k~~~  217 (350)
T PTZ00343        158 SILFLKQFLNLYAYLSLIPIVGGVALASV-K--E----------------LHF-TWLAFWCAMLSNLGSSLRSIFAKKTM  217 (350)
T ss_pred             HHHHhCCCccHHHHHHHHHHHHHHHheec-c--c----------------chh-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            56889999999999999999999988751 1  1                111 24699999999999999999999987


Q ss_pred             hhcc------hHHHHHHHHHHHHHHHHHHHHHHhcccc--ccccc---c-chhhHHHHHHHHHHHHHHHHHHHHH----H
Q 026497           82 KEFP------ALIVMLCYQYFFSTILAAMFSLTVVTEL--SAWKL---R-LDVGLFAIAYSAVIGAAFLTTLLLW----C  145 (237)
Q Consensus        82 ~~~~------~~~~~t~~~~~~g~l~~~~~~~~~~~~~--~~~~~---~-~~~~~~~llylgi~~t~la~~l~~~----~  145 (237)
                      ++.+      ++..+..++..+|+++++|+..+.|...  ..|..   . ....+..++|. ++.++++|.+|+.    +
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~s~l~~~l~n~~~f~~  296 (350)
T PTZ00343        218 KNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFK-IFFSGVWYYLYNEVAFYC  296 (350)
T ss_pred             cccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            6532      2455666778899999999887665321  11100   0 01123445664 6678999999995    9


Q ss_pred             HhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcc
Q 026497          146 LMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG  198 (237)
Q Consensus       146 l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~  198 (237)
                      +++++|.+.++..++.|++++++|++++||++++.+++|+++++.|+++..+-
T Consensus       297 l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~  349 (350)
T PTZ00343        297 LGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF  349 (350)
T ss_pred             HhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999987653

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.76  E-value=5e-17  Score=140.54  Aligned_cols=170  Identities=19%  Similarity=0.277  Sum_probs=131.9

Q ss_pred             ceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCc-chhhHHHHHHHHHHHHHHHHHHHHHHh
Q 026497            4 LKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSN-WILGGFYLAAQAILISAWYILQAITLK   82 (237)
Q Consensus         4 ~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~G~ll~llaa~~~a~y~v~~~~~~~   82 (237)
                      +++|||+++++++|++++++|++++... +.                 .+.. ...|+++.++++++|++|.+..|+.. 
T Consensus       117 ~~~~e~~~~~~~~~~~~~~~Gv~lv~~~-~~-----------------~~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~-  177 (292)
T COG0697         117 LLLGERLSLLQILGILLALAGVLLILLG-GG-----------------GGGILSLLGLLLALAAALLWALYTALVKRLS-  177 (292)
T ss_pred             HHccCCCcHHHHHHHHHHHHhHHheecC-CC-----------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            4569999999999999999999888621 11                 0011 35899999999999999999999877 


Q ss_pred             hcchHHHHHH-HHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhhH
Q 026497           83 EFPALIVMLC-YQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLA  161 (237)
Q Consensus        83 ~~~~~~~~t~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l~  161 (237)
                      +.+ +..... +++. +.. ............  .. .....+..+.+.|+++++++|.+|++++++.++++++.+.+++
T Consensus       178 ~~~-~~~~~~~~~~~-~~~-~~~~~~~~~~~~--~~-~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  251 (292)
T COG0697         178 RLG-PVTLALLLQLL-LAL-LLLLLFFLSGFG--AP-ILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLE  251 (292)
T ss_pred             CCC-hHHHHHHHHHH-HHH-HHHHHHHhcccc--cc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence            443 455555 5554 222 222221111111  11 1124578899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcc
Q 026497          162 ILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG  198 (237)
Q Consensus       162 Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~  198 (237)
                      |+++++++++++||+++..+++|+++++.|+.+...+
T Consensus       252 ~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         252 PVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999988766

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.65  E-value=1.3e-15  Score=116.01  Aligned_cols=125  Identities=15%  Similarity=0.334  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 026497           68 ILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLM  147 (237)
Q Consensus        68 ~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~  147 (237)
                      ++||.+.++.|+..++.+ +...++++++.+++ +.+...+.+...  +.......+..+++.+++++++++.+|+++++
T Consensus         1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   76 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK   76 (126)
T ss_pred             ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence            478999999999998875 89999999999998 666665554422  11112245778889999999999999999999


Q ss_pred             ccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhh
Q 026497          148 RAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM  196 (237)
Q Consensus       148 ~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~  196 (237)
                      +.++++++.+.+++|+++.+++++++||++++.+++|+++++.|+++..
T Consensus        77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>TIGR00688 rarD rarD protein

Probab=99.60  E-value=1.5e-14  Score=124.85  Aligned_cols=139  Identities=8%  Similarity=0.036  Sum_probs=97.1

Q ss_pred             ccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026497            2 EKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITL   81 (237)
Q Consensus         2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~   81 (237)
                      +++++|||+++++++|++++++|++++...++                   +  .   .++.++++++|++|.+..|+..
T Consensus       114 a~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~-------------------~--~---~~~~l~aa~~~a~~~i~~~~~~  169 (256)
T TIGR00688       114 GRVFLKERISRFQFIAVIIATLGVISNIVLKG-------------------S--L---PWEALVLAFSFTAYGLIRKALK  169 (256)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcC-------------------C--c---hHHHHHHHHHHHHHHHHHhhcC
Confidence            46789999999999999999999988752110                   1  1   1357889999999999988865


Q ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHH---HhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhh
Q 026497           82 KEFPALIVMLCYQYFFSTILAAMFSL---TVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFK  158 (237)
Q Consensus        82 ~~~~~~~~~t~~~~~~g~l~~~~~~~---~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~  158 (237)
                      ++ + ......     +.+...+...   ............+...|..++++|++ +.++|.+|++++++.+|++++++.
T Consensus       170 ~~-~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-t~i~~~l~~~a~~~~~a~~~s~~~  241 (256)
T TIGR00688       170 NT-D-LAGFCL-----ETLSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLI-TGTPLLAFVIAANRLPLNLLGLLQ  241 (256)
T ss_pred             CC-C-cchHHH-----HHHHHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHH-HHHHHHHHHHHHHcCChHHHHHHH
Confidence            43 2 222221     1222222221   11111110111112357788888876 899999999999999999999999


Q ss_pred             hhHHHHHHHHHHHH
Q 026497          159 PLAILFSTVMGVII  172 (237)
Q Consensus       159 ~l~Pv~a~ll~~l~  172 (237)
                      |++|++++++|+++
T Consensus       242 yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       242 YIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999864

This uncharacterized protein is predicted to have many membrane-spanning domains.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.58  E-value=1.7e-14  Score=127.31  Aligned_cols=173  Identities=16%  Similarity=0.207  Sum_probs=127.6

Q ss_pred             cceeeccCCCcc----hhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHH
Q 026497            3 KLKWRSKSSQAK----SLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQA   78 (237)
Q Consensus         3 ~~~lrer~s~~~----~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~   78 (237)
                      .+++|||.++++    ++|+++.++|++++...++...           + .....+...|.++.++++++|+.|.+..|
T Consensus       105 ~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~-----------~-~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~  172 (290)
T TIGR00776       105 VIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSA-----------G-IKSEFNFKKGILLLLMSTIGYLVYVVVAK  172 (290)
T ss_pred             HHHhhhccchHHHHHHHHHHHHHHHhHheEEecccccc-----------c-cccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            467899999999    9999999999877642211100           0 00002335799999999999999999988


Q ss_pred             HHHhhcchHHHHHHH---HHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHh-ccChhhh
Q 026497           79 ITLKEFPALIVMLCY---QYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLM-RAGPLYV  154 (237)
Q Consensus        79 ~~~~~~~~~~~~t~~---~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~-~~~a~~~  154 (237)
                      +.  +++ |+..++.   .+++++....+..  ....  ++.  ....+..++ .|++ +.++|.+|..+.+ +.+++++
T Consensus       173 ~~--~~~-~~~~~~~~~~g~~~~~~~~~~~~--~~~~--~~~--~~~~~~~~~-~Gi~-~~ia~~~y~~~~~~~~~~~~~  241 (290)
T TIGR00776       173 AF--GVD-GLSVLLPQAIGMVIGGIIFNLGH--ILAK--PLK--KYAILLNIL-PGLM-WGIGNFFYLFSAQPKVGVATS  241 (290)
T ss_pred             Hc--CCC-cceehhHHHHHHHHHHHHHHHHH--hccc--chH--HHHHHHHHH-HHHH-HHHHHHHHHHHcccccchhhH
Confidence            75  354 6777444   4444444333322  1111  121  112344555 8888 7999999999999 9999999


Q ss_pred             hhhhhhHHHHHHHHHHHHhcCCcchhhH----HHHHHHHHHHhhhhcc
Q 026497          155 SMFKPLAILFSTVMGVIIFGDGLFLGSL----VGAVIIVIGFYVVMWG  198 (237)
Q Consensus       155 s~~~~l~Pv~a~ll~~l~lgE~l~~~~~----iG~~lIl~Gv~l~~~~  198 (237)
                      +.+..++|+.+++++++++||+.+..|+    +|+++|+.|+.+....
T Consensus       242 ~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~  289 (290)
T TIGR00776       242 FSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG  289 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999    9999999999876543

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.55  E-value=2.1e-13  Score=115.84  Aligned_cols=164  Identities=11%  Similarity=0.049  Sum_probs=127.7

Q ss_pred             cchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q 026497           13 AKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLC   92 (237)
Q Consensus        13 ~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~   92 (237)
                      +..+-+.+++.|+.++.- .+++.                ..-...|..+.+.+..||+.|++..+|.-+..+ ..+-++
T Consensus       120 ~d~vwvaLAvlGi~lL~p-~~~~~----------------~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~-g~~g~a  181 (292)
T COG5006         120 RDFVWVALAVLGIWLLLP-LGQSV----------------WSLDPVGVALALGAGACWALYIVLGQRAGRAEH-GTAGVA  181 (292)
T ss_pred             hhHHHHHHHHHHHHhhee-ccCCc----------------CcCCHHHHHHHHHHhHHHHHHHHHcchhcccCC-CchHHH
Confidence            445566788899988752 22211                112257999999999999999999998875443 567778


Q ss_pred             HHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHH
Q 026497           93 YQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVII  172 (237)
Q Consensus        93 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~  172 (237)
                      ..+++++++..|+.....++ .-+  .+ .-...-+-.++++|++-|.+=..+++|+++..-+..+.+||.++.+.|+++
T Consensus       182 ~gm~vAaviv~Pig~~~ag~-~l~--~p-~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~  257 (292)
T COG5006         182 VGMLVAALIVLPIGAAQAGP-ALF--SP-SLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIF  257 (292)
T ss_pred             HHHHHHHHHHhhhhhhhcch-hhc--Ch-HHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHH
Confidence            89999999999998743332 111  11 123345667899999999999999999999999999999999999999999


Q ss_pred             hcCCcchhhHHHHHHHHHHHhhhhcc
Q 026497          173 FGDGLFLGSLVGAVIIVIGFYVVMWG  198 (237)
Q Consensus       173 lgE~l~~~~~iG~~lIl~Gv~l~~~~  198 (237)
                      |||++++.|++|+++|+.+..=..+.
T Consensus       258 L~e~ls~~qwlaI~~ViaAsaG~~lt  283 (292)
T COG5006         258 LGETLTLIQWLAIAAVIAASAGSTLT  283 (292)
T ss_pred             hcCCCCHHHHHHHHHHHHHHhccccc
Confidence            99999999999999999876544443

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.49  E-value=4.8e-13  Score=102.66  Aligned_cols=135  Identities=16%  Similarity=0.184  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHH
Q 026497           60 GFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLT  139 (237)
Q Consensus        60 ~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~  139 (237)
                      .++.++++++|++..++.|--.++.+ |..-|+....+..+++....+..++....-.. .+..|.-++..| +.+++++
T Consensus         5 ~~~ALLsA~fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~-~~k~~lflilSG-la~glsw   81 (140)
T COG2510           5 IIYALLSALFAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEI-GPKSWLFLILSG-LAGGLSW   81 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCceeccccc-CcceehhhhHHH-HHHHHHH
Confidence            57889999999999999888788774 77778887777777777766665532111011 235677788888 5899999


Q ss_pred             HHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhc
Q 026497          140 TLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW  197 (237)
Q Consensus       140 ~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~  197 (237)
                      .+|++++++-.++++...--+-|++++++++++|||+++..+++|++||..|..++.+
T Consensus        82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            9999999999999999999999999999999999999999999999999999887654

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.49  E-value=1.2e-12  Score=115.97  Aligned_cols=190  Identities=17%  Similarity=0.218  Sum_probs=142.7

Q ss_pred             CccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 026497            1 MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAIT   80 (237)
Q Consensus         1 ~e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~   80 (237)
                      ++.+++|+|+++++++++++-.+|+++....+.....          +......++..|+++++++.++-+++.++++|.
T Consensus       107 ~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~----------~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~  176 (303)
T PF08449_consen  107 LGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS----------SSNSSSFSSALGIILLLLSLLLDAFTGVYQEKL  176 (303)
T ss_pred             HHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc----------ccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3578899999999999999999999887543221110          001111223349999999999999999999999


Q ss_pred             Hhhcc-hHHHHHHHHHHHHHHHHHHHHHH--hccccccccc--cchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhh
Q 026497           81 LKEFP-ALIVMLCYQYFFSTILAAMFSLT--VVTELSAWKL--RLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVS  155 (237)
Q Consensus        81 ~~~~~-~~~~~t~~~~~~g~l~~~~~~~~--~~~~~~~~~~--~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s  155 (237)
                      .++++ ++.+...+..+++.+...+....  .++....+..  ..+..+..++... ++..++....++.+++.||...+
T Consensus       177 ~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s-~~~~~g~~~i~~~~~~~~al~~t  255 (303)
T PF08449_consen  177 FKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFS-LTGALGQFFIFYLIKKFSALTTT  255 (303)
T ss_pred             HHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCchhhh
Confidence            87764 47889999999998888877766  2221111111  1112233444333 35667777778899999999999


Q ss_pred             hhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhccccc
Q 026497          156 MFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK  201 (237)
Q Consensus       156 ~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~  201 (237)
                      +...+--+++++++++++|+++++.+++|.++++.|+.+..+.|++
T Consensus       256 ~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k  301 (303)
T PF08449_consen  256 IVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKK  301 (303)
T ss_pred             hHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhcc
Confidence            9999999999999999999999999999999999999987776554

; GO: 0055085 transmembrane transport

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.41  E-value=6.3e-13  Score=118.38  Aligned_cols=188  Identities=18%  Similarity=0.219  Sum_probs=140.0

Q ss_pred             ceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 026497            4 LKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKE   83 (237)
Q Consensus         4 ~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~~~   83 (237)
                      ++..||++..|+++++++++|+++++.++....            .+....+...|+++.+++|+.||+|+++.||...+
T Consensus       205 if~~e~ft~sKllav~~si~GViiVt~~~s~~~------------~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~  272 (416)
T KOG2765|consen  205 IFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQN------------SDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGD  272 (416)
T ss_pred             HcCcchhhHHHHHHHHHhhccEEEEEecccccc------------ccCCccchhHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            455799999999999999999988764322110            11233456799999999999999999999987655


Q ss_pred             cc---hHHHHHHHHHHHHHHHHHHHHHHhccc-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhh
Q 026497           84 FP---ALIVMLCYQYFFSTILAAMFSLTVVTE-LSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKP  159 (237)
Q Consensus        84 ~~---~~~~~t~~~~~~g~l~~~~~~~~~~~~-~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~  159 (237)
                      ..   +--.+-.+..++.-+++.|..++.+.- ...+..+.......+++.+.++|+++=++|.++.-..+|..+.+-+.
T Consensus       273 eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmS  352 (416)
T KOG2765|consen  273 EGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMS  352 (416)
T ss_pred             ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeee
Confidence            42   222233344444555555544433211 11222333345567788899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhccccccc
Q 026497          160 LAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEE  203 (237)
Q Consensus       160 l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~~~  203 (237)
                      ++-..|++...++=|.++++.+++|.+.|++|.++++...+...
T Consensus       353 ltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~~  396 (416)
T KOG2765|consen  353 LTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENSK  396 (416)
T ss_pred             EeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccccc
Confidence            99999999999988999999999999999999999887755433

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.40  E-value=2.1e-11  Score=105.74  Aligned_cols=170  Identities=14%  Similarity=0.149  Sum_probs=126.3

Q ss_pred             ccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026497            2 EKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITL   81 (237)
Q Consensus         2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~   81 (237)
                      .++++|||+++.|++.+.++.+|+.......|                   +..     ...+.=+++|++|...-|+ .
T Consensus       116 G~lflkErls~~Q~iAV~lA~~GV~~~~~~~g-------------------~lp-----wval~la~sf~~Ygl~RK~-~  170 (293)
T COG2962         116 GRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG-------------------SLP-----WVALALALSFGLYGLLRKK-L  170 (293)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC-------------------CCc-----HHHHHHHHHHHHHHHHHHh-c
Confidence            46899999999999999999999988764322                   111     2336667999999988443 3


Q ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhhH
Q 026497           82 KEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLA  161 (237)
Q Consensus        82 ~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l~  161 (237)
                      + .+ +.+-.+.-++.-....+.+.++.+.+..-........+..++..|+ .|++...+|..+-|+++-+..+.++|++
T Consensus       171 ~-v~-a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~-vTavpL~lf~~aa~~lpls~~G~lqYi~  247 (293)
T COG2962         171 K-VD-ALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGL-VTAVPLLLFAAAAKRLPLSTLGFLQYIE  247 (293)
T ss_pred             C-Cc-hHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhH-HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            3 33 4555555555555555555555443321011011234556666676 6999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhccc
Q 026497          162 ILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK  199 (237)
Q Consensus       162 Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~  199 (237)
                      |..-.++|++++||+++..+.+..++|-.|+.+.....
T Consensus       248 Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~  285 (293)
T COG2962         248 PTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDG  285 (293)
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998876543

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.33  E-value=2.1e-13  Score=116.06  Aligned_cols=177  Identities=15%  Similarity=0.150  Sum_probs=137.3

Q ss_pred             ccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026497            2 EKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITL   81 (237)
Q Consensus         2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~   81 (237)
                      .++|+|.|.++.|+.|+++|++|++++++++-..            .+..++++...||++++++|-+||+.++..+.+.
T Consensus       122 sw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~a------------gd~aggsnp~~GD~lvi~GATlYaVSNv~EEflv  189 (336)
T KOG2766|consen  122 SWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHA------------GDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLV  189 (336)
T ss_pred             HHHHHHHHHhhheeeeEEeEecceEEEEEeeecc------------ccccCCCCCccCcEEEEecceeeeeccccHHHHH
Confidence            3678999999999999999999999887543111            2234567778999999999999999999999888


Q ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHH-HHHHHHHHHHHHHHHHhccChhhhhhhhhh
Q 026497           82 KEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYS-AVIGAAFLTTLLLWCLMRAGPLYVSMFKPL  160 (237)
Q Consensus        82 ~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llyl-gi~~t~la~~l~~~~l~~~~a~~~s~~~~l  160 (237)
                      |+.+ ..+++....++|+++..+- +.++.+.. -..+|+  |-...|+ ..++..+-|.+.-..+|..+++...+-...
T Consensus       190 kn~d-~~elm~~lgLfGaIIsaIQ-~i~~~~~~-~tl~w~--~~i~~yl~f~L~MFllYsl~pil~k~~~aT~~nlslLT  264 (336)
T KOG2766|consen  190 KNAD-RVELMGFLGLFGAIISAIQ-FIFERHHV-STLHWD--SAIFLYLRFALTMFLLYSLAPILIKTNSATMFNLSLLT  264 (336)
T ss_pred             hcCc-HHHHHHHHHHHHHHHHHHH-Hhhhccce-eeEeeh--HHHHHHHHHHHHHHHHHHhhHHheecCCceEEEhhHhH
Confidence            8875 7899999999999999887 44554311 112222  2222333 344556666777788999999999999988


Q ss_pred             HHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhc
Q 026497          161 AILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW  197 (237)
Q Consensus       161 ~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~  197 (237)
                      .-.++++.  ..+|-+++|...+..+.+..|+++...
T Consensus       265 sDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~  299 (336)
T KOG2766|consen  265 SDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYST  299 (336)
T ss_pred             HHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeec
Confidence            99999888  678888999999999999999988643

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.32  E-value=8.6e-11  Score=103.80  Aligned_cols=137  Identities=12%  Similarity=0.076  Sum_probs=109.4

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhcccccccc--ccchhhHHHHHHHHHH
Q 026497           56 WILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWK--LRLDVGLFAIAYSAVI  133 (237)
Q Consensus        56 ~~~G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~--~~~~~~~~~llylgi~  133 (237)
                      ...|.+++++++++|+...+..|.. .+.+ |.++.+++++++.+.+.++.....+.. ...  ... .........+.+
T Consensus         6 ~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~   81 (296)
T PRK15430          6 TRQGVLLALAAYFIWGIAPAYFKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICRQWS-YLKTLIQT-PQKIFMLAVSAV   81 (296)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHccHH-HHHHHHcC-HHHHHHHHHHHH
Confidence            4579999999999999999998764 5565 899999999999887776654332111 000  001 112223346677


Q ss_pred             HHHHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhh
Q 026497          134 GAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM  196 (237)
Q Consensus       134 ~t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~  196 (237)
                      ..++.+.+|++++++.+++.+++..++.|++.++++++++||+++..+++|.++.+.|+.+..
T Consensus        82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~  144 (296)
T PRK15430         82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL  144 (296)
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            788999999999999999999999999999999999999999999999999999999988764

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=99.24  E-value=3.2e-10  Score=88.62  Aligned_cols=121  Identities=16%  Similarity=0.156  Sum_probs=91.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHH
Q 026497           59 GGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFL  138 (237)
Q Consensus        59 G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la  138 (237)
                      |.++++.+.++-+...++.|+=.++.+ .......     .+ ..... .  .           .....+|+|+++.+++
T Consensus         3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g-~~~~~~~-----~~-~~~~~-~--~-----------~p~~~i~lgl~~~~la   61 (129)
T PRK02971          3 GYLWGLASVLLASVAQLSLKWGMSRLP-LLSHAWD-----FI-AALLA-F--G-----------LALRAVLLGLAGYALS   61 (129)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhCC-CccchhH-----HH-HHHHH-H--h-----------ccHHHHHHHHHHHHHH
Confidence            667888888888888888787666543 2221111     00 00000 0  0           0122578899999999


Q ss_pred             HHHHHHHHhccChhhhhhhhhhHHHHHHHHHHH--HhcCCcchhhHHHHHHHHHHHhhhhcccc
Q 026497          139 TTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVI--IFGDGLFLGSLVGAVIIVIGFYVVMWGKA  200 (237)
Q Consensus       139 ~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l--~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~  200 (237)
                      |.+|++++++.+++.+..+..+.++...+.++.  ++||++++.+++|.++|++|++++.++++
T Consensus        62 ~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~  125 (129)
T PRK02971         62 MLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT  125 (129)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence            999999999999999999999999999888885  89999999999999999999999876544

>TIGR00688 rarD rarD protein

Probab=99.20  E-value=9.1e-10  Score=95.02  Aligned_cols=136  Identities=14%  Similarity=0.179  Sum_probs=106.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhcccc---ccccccchhh-HHHHHHHHHH
Q 026497           58 LGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTEL---SAWKLRLDVG-LFAIAYSAVI  133 (237)
Q Consensus        58 ~G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~---~~~~~~~~~~-~~~llylgi~  133 (237)
                      .|.+++++++++|+...+..|. ..+.+ |.+++++.++++++.+.++.....+..   ..++...... +..+...|++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LKPLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hccCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            3788999999999999999887 44564 899999999999888776654432110   0111001112 3344555554


Q ss_pred             HHHHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhh
Q 026497          134 GAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM  196 (237)
Q Consensus       134 ~t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~  196 (237)
                       ..+.+.++++++++.+++.++...++.|++.+++++++++|+++..+++|.++.+.|+.+..
T Consensus        80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~  141 (256)
T TIGR00688        80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI  141 (256)
T ss_pred             -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence             67889999999999999999999999999999999999999999999999999999987653

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.20  E-value=5.7e-10  Score=94.34  Aligned_cols=179  Identities=14%  Similarity=0.156  Sum_probs=138.8

Q ss_pred             ceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 026497            4 LKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKE   83 (237)
Q Consensus         4 ~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~~~   83 (237)
                      ++.|++.+++|...++.-++|+++.. ++.....            +..+.....|.++.+++-..=+.....+.|....
T Consensus       131 l~~~KsY~w~kY~cVL~IV~GValFm-YK~~Kv~------------g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~  197 (337)
T KOG1580|consen  131 LFAHKSYHWRKYCCVLMIVVGVALFM-YKENKVG------------GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRAS  197 (337)
T ss_pred             hhhcccccHHHHHHHHHHHHHHHHhh-ccccccC------------CCcccccchHHHHHHHHHHhcccchhHHHHHHHh
Confidence            57889999999999999999998874 7633221            1223456789999999988888888888887655


Q ss_pred             cc-hHHHHHHHHHHHHHHHHHHHHHHhccc--cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhh
Q 026497           84 FP-ALIVMLCYQYFFSTILAAMFSLTVVTE--LSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPL  160 (237)
Q Consensus        84 ~~-~~~~~t~~~~~~g~l~~~~~~~~~~~~--~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l  160 (237)
                      +. ..-.++.+..+.+++.+....++.++-  +..+...-+..|+-+..+++ +++++.++.+.-+...||-.-|+.+..
T Consensus       198 yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai-~s~LGQ~fIF~tv~~FgPLtCSivTTT  276 (337)
T KOG1580|consen  198 YQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAI-ASCLGQWFIFKTVEEFGPLTCSIVTTT  276 (337)
T ss_pred             hccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHH-HHHhhhHHHHHHHHHhCCeeEEEEeeh
Confidence            42 246777888888888877766655542  11111111234566666665 889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhh
Q 026497          161 AILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM  196 (237)
Q Consensus       161 ~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~  196 (237)
                      --.|+++.++++++.+++..||+|.++++.++..=.
T Consensus       277 RKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~  312 (337)
T KOG1580|consen  277 RKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV  312 (337)
T ss_pred             HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence            999999999999999999999999999999987644

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.19  E-value=8.5e-10  Score=96.65  Aligned_cols=133  Identities=14%  Similarity=0.205  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHH
Q 026497           60 GFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLT  139 (237)
Q Consensus        60 ~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~  139 (237)
                      .++.++++++||.+.+..||..++.+ +  ...+....+++.+.|+....... ..|.... ..+...+..+.+.....+
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~~-~--~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~   77 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKEP-D--FLWWALLAHSVLLTPYGLWYLAQ-VGWSRLP-ATFWLLLAISAVANMVYF   77 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchh-H--HHHHHHHHHHHHHHHHHHHhccc-CCCCCcc-hhhHHHHHHHHHHHHHHH
Confidence            36779999999999999998776532 3  34555566666776765542111 1222111 233434445556788899


Q ss_pred             HHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhc
Q 026497          140 TLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW  197 (237)
Q Consensus       140 ~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~  197 (237)
                      .++++++++.+++.++++.+..|+++++++++++||+++..+++|.++++.|+.+...
T Consensus        78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~  135 (281)
T TIGR03340        78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL  135 (281)
T ss_pred             HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999987654

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.10  E-value=6e-09  Score=82.65  Aligned_cols=137  Identities=16%  Similarity=0.203  Sum_probs=108.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhh------cchHHHHHHHHHHHHHHHHHHHHHHhccccc-c--cccc------chhh
Q 026497           59 GGFYLAAQAILISAWYILQAITLKE------FPALIVMLCYQYFFSTILAAMFSLTVVTELS-A--WKLR------LDVG  123 (237)
Q Consensus        59 G~ll~llaa~~~a~y~v~~~~~~~~------~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~-~--~~~~------~~~~  123 (237)
                      |.++.+.+.++.|++.++.|+..++      ..++..+..+....+.+.+.+.+++.|+... .  ....      ....
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            6788999999999999999998766      2258999999999999999999988776421 0  0000      1122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhh
Q 026497          124 LFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM  196 (237)
Q Consensus       124 ~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~  196 (237)
                      +..++..|++ ..+-....++.+++.+|...++...+-.+...++|++++||++++.+++|.++.+.|+++..
T Consensus        81 ~~~~~~~~~~-~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys  152 (153)
T PF03151_consen   81 IFLLILSGLL-AFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS  152 (153)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence            3444444443 34555666789999999999999999999999999999999999999999999999987653

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.05  E-value=3.6e-11  Score=103.11  Aligned_cols=185  Identities=16%  Similarity=0.156  Sum_probs=128.5

Q ss_pred             ccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCccc-CcchhhHHHHHHHHHHHHHHHHHHHHH
Q 026497            2 EKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQ-SNWILGGFYLAAQAILISAWYILQAIT   80 (237)
Q Consensus         2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~G~ll~llaa~~~a~y~v~~~~~   80 (237)
                      .++++|||+++...+|.++.+.|+++++   .|..-+ +++.   ..+++++ .....|....+.+++.-|--.++.|+.
T Consensus       141 aw~~LkE~~t~~eaL~s~itl~GVVLIv---RPpFlF-G~~t---~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~i  213 (346)
T KOG4510|consen  141 AWAFLKEPFTKFEALGSLITLLGVVLIV---RPPFLF-GDTT---EGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYI  213 (346)
T ss_pred             HHHHHcCCCcHHHHHHHHHhhheEEEEe---cCCccc-CCCc---cccccccccccCCchHHHHHhHhhhhhHHHHHHHh
Confidence            4789999999999999999999999885   333221 1110   0111222 334568777788887777656666887


Q ss_pred             HhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhh
Q 026497           81 LKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPL  160 (237)
Q Consensus        81 ~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l  160 (237)
                      -|+.+ ......+-.+++.+...+.....+.  ..|.. ....|+-++.+|++ ..++..+...++|+-.|.++++..+.
T Consensus       214 Gk~~h-~~msvsyf~~i~lV~s~I~~~~ig~--~~lP~-cgkdr~l~~~lGvf-gfigQIllTm~lQiErAGpvaim~~~  288 (346)
T KOG4510|consen  214 GKNAH-AIMSVSYFSLITLVVSLIGCASIGA--VQLPH-CGKDRWLFVNLGVF-GFIGQILLTMGLQIERAGPVAIMTYT  288 (346)
T ss_pred             hcccc-EEEEehHHHHHHHHHHHHHHhhccc--eecCc-cccceEEEEEehhh-hhHHHHHHHHHhhhhccCCeehhhHH
Confidence            67653 3333334344444444433322221  11211 12456667778886 47889999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcc
Q 026497          161 AILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG  198 (237)
Q Consensus       161 ~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~  198 (237)
                      +-++|.++-++++||.++++.+.|+++|+.+...+..+
T Consensus       289 dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~  326 (346)
T KOG4510|consen  289 DVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALK  326 (346)
T ss_pred             HHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHH
Confidence            99999999999999999999999999999876655443

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.01  E-value=1.6e-08  Score=91.93  Aligned_cols=138  Identities=14%  Similarity=0.137  Sum_probs=110.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHH
Q 026497           59 GGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFL  138 (237)
Q Consensus        59 G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la  138 (237)
                      -.+.+++.-++|+.+.++.|...+.--++..+.++-+.+++++++++.+..++... +.......|..+..+|+++ .+.
T Consensus        14 ~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~-~~~~~~~~~~~l~l~g~~g-~~~   91 (358)
T PLN00411         14 FLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRS-LPPLSVSILSKIGLLGFLG-SMY   91 (358)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcchHHHHHHHHHHHHHH-HHH
Confidence            45667788899999999989887663358899999999999999988876543211 1110112455666677777 566


Q ss_pred             HHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHH------hcCCcchhhHHHHHHHHHHHhhhhcc
Q 026497          139 TTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVII------FGDGLFLGSLVGAVIIVIGFYVVMWG  198 (237)
Q Consensus       139 ~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~------lgE~l~~~~~iG~~lIl~Gv~l~~~~  198 (237)
                      +.++++++++.+|+.++++.++.|++.+++++++      ++|+++..+++|.++-+.|+.+....
T Consensus        92 ~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~  157 (358)
T PLN00411         92 VITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY  157 (358)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence            7789999999999999999999999999999999      69999999999999999999876643

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.96  E-value=1.3e-08  Score=77.46  Aligned_cols=107  Identities=16%  Similarity=0.334  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHH
Q 026497           93 YQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVII  172 (237)
Q Consensus        93 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~  172 (237)
                      +.++++.+.+.++.....+....++......+...+..|+++...++.+|++++++.++ .++....+.|++++++++++
T Consensus         3 ~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~   81 (113)
T PF13536_consen    3 FRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLF   81 (113)
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHH
Confidence            34455555555554443221111111011234445555777777999999999999995 88899999999999999999


Q ss_pred             hcCCcchhhHHHHHHHHHHHhhhhcccc
Q 026497          173 FGDGLFLGSLVGAVIIVIGFYVVMWGKA  200 (237)
Q Consensus       173 lgE~l~~~~~iG~~lIl~Gv~l~~~~~~  200 (237)
                      ++|+++..+++|.++++.|+.+..+.+.
T Consensus        82 ~~er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   82 FKERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            9999999999999999999998877643

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.96  E-value=4.7e-08  Score=86.17  Aligned_cols=131  Identities=15%  Similarity=0.078  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHH
Q 026497           60 GFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLT  139 (237)
Q Consensus        60 ~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~  139 (237)
                      .+..++..+.|+...+..|...+.. +|..++++.+.++++++.++.......   .  .....+...+..|++...+.+
T Consensus        10 ~~~~~~~~~iWg~~~~~~K~~~~~~-~p~~~~~~R~~~a~l~ll~~~~~~~~~---~--~~~~~~~~~~~~g~~~~~~~~   83 (292)
T PRK11272         10 FGALFALYIIWGSTYLVIRIGVESW-PPLMMAGVRFLIAGILLLAFLLLRGHP---L--PTLRQWLNAALIGLLLLAVGN   83 (292)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHHhCCC---C--CcHHHHHHHHHHHHHHHHHHH
Confidence            3456778899999999988777766 489999999999999888776542211   1  112345556667777777888


Q ss_pred             HHHHHHH-hccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhc
Q 026497          140 TLLLWCL-MRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW  197 (237)
Q Consensus       140 ~l~~~~l-~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~  197 (237)
                      .+++++. ++.+++.+++..++.|++..+++++ +||+++..+++|.++.+.|+++...
T Consensus        84 ~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~  141 (292)
T PRK11272         84 GMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS  141 (292)
T ss_pred             HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence            8899999 9999999999999999999999985 7999999999999999999988754

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.94  E-value=2.1e-08  Score=86.10  Aligned_cols=119  Identities=13%  Similarity=0.048  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026497           70 ISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRA  149 (237)
Q Consensus        70 ~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~  149 (237)
                      |+...+..|...+...++.....+.++.+.+.+.+.....   .      ....+...+..+.++..+.+.++++++++.
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~---~------~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~   71 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR---P------PLKRLLRLLLLGALQIGVFYVLYFVAVKRL   71 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc---c------CHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3444555566555444578888888888888777654321   1      123455566677788889999999999999


Q ss_pred             ChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhc
Q 026497          150 GPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW  197 (237)
Q Consensus       150 ~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~  197 (237)
                      +++.+++...+.|++..+++++++||++++.+++|.++.+.|+.+...
T Consensus        72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~  119 (260)
T TIGR00950        72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS  119 (260)
T ss_pred             ChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence            999999999999999999999999999999999999999999888654

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.90  E-value=7.6e-08  Score=85.09  Aligned_cols=127  Identities=14%  Similarity=0.214  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHH
Q 026497           60 GFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLT  139 (237)
Q Consensus        60 ~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~  139 (237)
                      .++.+++++.|+...+..|...++.+ |..++++.++++++.+.++..   ....        .+..++..|++.....+
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~-p~~~~~~R~~~a~~~l~~~~~---~~~~--------~~~~~~~~g~~~~~~~~   73 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLHNMP-PLMLAGLRFMLVAFPAIFFVA---RPKV--------PLNLLLGYGLTISFGQF   73 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHhc---CCCC--------chHHHHHHHHHHHHHHH
Confidence            36688999999999999998777774 899999999988766554321   1100        12222333454455566


Q ss_pred             HHHHHHHhc-cChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcc
Q 026497          140 TLLLWCLMR-AGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG  198 (237)
Q Consensus       140 ~l~~~~l~~-~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~  198 (237)
                      .+++.++++ .+++.++++.++.|++..++++++++|+++..+++|.++.+.|+.+....
T Consensus        74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~  133 (299)
T PRK11453         74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED  133 (299)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence            677788887 68899999999999999999999999999999999999999999877643

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.87  E-value=4.9e-08  Score=74.37  Aligned_cols=66  Identities=15%  Similarity=0.163  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhh
Q 026497          131 AVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM  196 (237)
Q Consensus       131 gi~~t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~  196 (237)
                      ++++-++++.+|..++++.+.+.+.....+.|+.++++|++++||++++.+++|.++|+.|+.+..
T Consensus        43 ~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         43 ALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            346778899999999999999999999999999999999999999999999999999999998754

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.85  E-value=1.6e-07  Score=82.93  Aligned_cols=119  Identities=13%  Similarity=0.108  Sum_probs=94.1

Q ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChh
Q 026497           73 WYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPL  152 (237)
Q Consensus        73 y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~  152 (237)
                      ++++.|...+.++.|..++.+++.++++.+.+..........  .. ....|..++..|++. ++.+.++++++++.+++
T Consensus        17 ~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~s   92 (302)
T TIGR00817        17 FNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRL--KI-SSALLKLLLPVAIVH-TIGHVTSNVSLSKVAVS   92 (302)
T ss_pred             HHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCC--CC-CHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHH
Confidence            456678777776669999999999988776554211111111  11 123566777778874 77789999999999999


Q ss_pred             hhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhh
Q 026497          153 YVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV  195 (237)
Q Consensus       153 ~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~  195 (237)
                      .+++...+.|++.+++++++++|+++..+++|.++++.|+.+.
T Consensus        93 ~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~  135 (302)
T TIGR00817        93 FTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA  135 (302)
T ss_pred             HHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999999764

specificities overlap.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.82  E-value=2.3e-07  Score=84.12  Aligned_cols=124  Identities=13%  Similarity=0.135  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 026497           71 SAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAG  150 (237)
Q Consensus        71 a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~  150 (237)
                      ..+++..|...+..|-|++++.++++++++.+.++...-........ .....+..++-+|++.... |...+.++++.+
T Consensus        62 ~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~llp~gl~~~~~-~~~~~~sl~~~s  139 (350)
T PTZ00343         62 VLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIK-SLKLFLKNFLPQGLCHLFV-HFGAVISMGLGA  139 (350)
T ss_pred             HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcc
Confidence            34566778878877558999999999998876555322111111111 1123456777788876554 777789999999


Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhh
Q 026497          151 PLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM  196 (237)
Q Consensus       151 a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~  196 (237)
                      ++.+.+...++|++.+++++++++|++++.+++|.++++.|+.+..
T Consensus       140 vs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~  185 (350)
T PTZ00343        140 VSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS  185 (350)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence            9999999999999999999999999999999999999999998865

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=98.82  E-value=3.9e-07  Score=81.30  Aligned_cols=186  Identities=18%  Similarity=0.156  Sum_probs=122.7

Q ss_pred             cceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 026497            3 KLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLK   82 (237)
Q Consensus         3 ~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~~   82 (237)
                      .+++|+|++++||..+++-++|+.++-.....+.      +   ........+...|...++.+++.-++-.++-+|.+|
T Consensus       137 vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~------~---a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK  207 (345)
T KOG2234|consen  137 VLILRRKLSRLQWMALVLLFAGVALVQLPSLSPT------G---AKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILK  207 (345)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCC------C---ccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4679999999999999999999988742111100      0   000223456678999999999999999999999987


Q ss_pred             hcchHHHH-HHHHHHHHHHHHHHHHHHhcccccccc----ccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhh
Q 026497           83 EFPALIVM-LCYQYFFSTILAAMFSLTVVTELSAWK----LRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMF  157 (237)
Q Consensus        83 ~~~~~~~~-t~~~~~~g~l~~~~~~~~~~~~~~~~~----~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~  157 (237)
                      +-..++.+ +.-..++|.++.+...+..+.....|.    -.+...|..++-     .+++=.+-...+|+.+--.=+..
T Consensus       208 ~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl~-----~a~gGLlvs~v~KyADnIlK~f~  282 (345)
T KOG2234|consen  208 GSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVLL-----NAVGGLLVSLVMKYADNILKGFS  282 (345)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHHH-----HhccchhHHHHHHHhHHHHHHHH
Confidence            64333333 333444555554444433332211121    111123444444     44444445555666665555555


Q ss_pred             hhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcccccc
Q 026497          158 KPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKE  202 (237)
Q Consensus       158 ~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~~  202 (237)
                      ..+.-++..+.++.++|-+++....+|..+|+.++++....++++
T Consensus       283 ~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~  327 (345)
T KOG2234|consen  283 TSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD  327 (345)
T ss_pred             HHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence            667778889999999999999999999999999999988666655

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.78  E-value=3.3e-07  Score=80.90  Aligned_cols=131  Identities=14%  Similarity=0.008  Sum_probs=97.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHH
Q 026497           58 LGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAF  137 (237)
Q Consensus        58 ~G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~l  137 (237)
                      .+.++.++++++|+...+..|...+..+ |..+.++.+.++++++.++.   ..+ . +..   ..+..++ .+.+.-..
T Consensus         4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~~-P~~~~~~R~~~a~l~l~~~~---~~~-~-~~~---~~~~~~~-~~~l~~~~   73 (295)
T PRK11689          4 KATLIGLIAILLWSTMVGLIRGVSESLG-PVGGAAMIYSVSGLLLLLTV---GFP-R-LRQ---FPKRYLL-AGGLLFVS   73 (295)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHccCC-hHHHHHHHHHHHHHHHHHHc---ccc-c-ccc---ccHHHHH-HHhHHHHH
Confidence            3577889999999999999998888875 89999999999988877642   111 1 110   0111122 22333334


Q ss_pred             HHHHHHHHHh----ccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcc
Q 026497          138 LTTLLLWCLM----RAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG  198 (237)
Q Consensus       138 a~~l~~~~l~----~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~  198 (237)
                      .+.+++.+++    ..++..++++.++.|++..++++++++|++++.+++|.++-+.|+.+....
T Consensus        74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~  138 (295)
T PRK11689         74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG  138 (295)
T ss_pred             HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence            4444555554    567888999999999999999999999999999999999999999876643

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=98.75  E-value=2.7e-07  Score=79.67  Aligned_cols=181  Identities=19%  Similarity=0.185  Sum_probs=117.2

Q ss_pred             cceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 026497            3 KLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLK   82 (237)
Q Consensus         3 ~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~~   82 (237)
                      ++++|+|++++||+++++-++|+.++-..........  .....+ .+....+...|.+++++++++-++..++.+|.+|
T Consensus        62 ~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~~--~~~~~~-~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK  138 (244)
T PF04142_consen   62 VLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDNS--SSSSVH-HDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLK  138 (244)
T ss_pred             HHHHHcccchhhHHHHHHHHHHHheeecCCccccccc--cccccc-cccccchhHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999987642211110000  000000 0111234578999999999999999999999998


Q ss_pred             hcch-HHHHHHHHHHHHHHHHHHHHHHhcccc-ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhh
Q 026497           83 EFPA-LIVMLCYQYFFSTILAAMFSLTVVTEL-SAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPL  160 (237)
Q Consensus        83 ~~~~-~~~~t~~~~~~g~l~~~~~~~~~~~~~-~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l  160 (237)
                      +.+. ...-+.+..++|.++.++.....+.+. .....-  ..+-...+..++..+++=.+-...+|+.+.-.=+.-..+
T Consensus       139 ~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f--~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~  216 (244)
T PF04142_consen  139 RSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFF--HGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAV  216 (244)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCch--hhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHH
Confidence            7633 344455555666655555543333211 100000  011112233344555555666677888888877777888


Q ss_pred             HHHHHHHHHHHHhcCCcchhhHHHHHHH
Q 026497          161 AILFSTVMGVIIFGDGLFLGSLVGAVII  188 (237)
Q Consensus       161 ~Pv~a~ll~~l~lgE~l~~~~~iG~~lI  188 (237)
                      .-+.+.+++++++|.+++....+|..+|
T Consensus       217 siv~t~~~s~~lf~~~~s~~f~lg~~~V  244 (244)
T PF04142_consen  217 SIVLTAVLSVLLFGFPPSLSFLLGAALV  244 (244)
T ss_pred             HHHHHHHHHHHHhCCCCchHHhhheecC
Confidence            8899999999999999999999998764

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=98.70  E-value=7.7e-09  Score=92.04  Aligned_cols=183  Identities=17%  Similarity=0.160  Sum_probs=134.8

Q ss_pred             CccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 026497            1 MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAIT   80 (237)
Q Consensus         1 ~e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~   80 (237)
                      +|+++.+|+.++..++.++.-..|+.+-..   .+                .+. ...|.+..+.+.++.+..+++.+++
T Consensus       126 ~~~~~~~~~~s~~~~lsL~piv~GV~ias~---~e----------------~~f-n~~G~i~a~~s~~~~al~~I~~~~l  185 (316)
T KOG1441|consen  126 LSVLLLGKTYSSMTYLSLLPIVFGVAIASV---TE----------------LSF-NLFGFISAMISNLAFALRNILSKKL  185 (316)
T ss_pred             HHHHHhCCCCcceEEEEEEEeeeeEEEeee---cc----------------ccc-cHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            478899999999999999988888865431   11                122 3589999999999999999999998


Q ss_pred             Hh--hc-chHHHHHHHHHHHHHHHHH-HHHHHhccccc-cccc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhh
Q 026497           81 LK--EF-PALIVMLCYQYFFSTILAA-MFSLTVVTELS-AWKL-RLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYV  154 (237)
Q Consensus        81 ~~--~~-~~~~~~t~~~~~~g~l~~~-~~~~~~~~~~~-~~~~-~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~  154 (237)
                      .+  +. -++..+..++.-++.+.++ |.....++... .+.. .+......+++.. ++...-....++.+++.+|..-
T Consensus       186 l~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-v~~f~~Nls~f~~ig~tSalT~  264 (316)
T KOG1441|consen  186 LTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNS-VLAFLLNLSAFLVIGRTSALTY  264 (316)
T ss_pred             hhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHH-HHHHHHHHHHHHHHcccCchhh
Confidence            84  22 1478888888888888888 77766554322 0011 1111223333333 1222223445688999999999


Q ss_pred             hhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcccccccc
Q 026497          155 SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEEN  204 (237)
Q Consensus       155 s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~~~~  204 (237)
                      ++...+==++.++.+++++++++++.+.+|.++-++|+++..+.|.++++
T Consensus       265 ~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~  314 (316)
T KOG1441|consen  265 SVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK  314 (316)
T ss_pred             hhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence            99999988999999999999999999999999999999998877665444

>TIGR00803 nst UDP-galactose transporter

Probab=98.64  E-value=2.8e-07  Score=78.04  Aligned_cols=189  Identities=15%  Similarity=0.085  Sum_probs=110.9

Q ss_pred             ccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCc---------cCCCCccccccccCcccCcchhhHHHHHHHHHHHHH
Q 026497            2 EKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPI---------VRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISA   72 (237)
Q Consensus         2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~---------~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~   72 (237)
                      +....++|.++.|++++++...|++.-..++.+..         ...+. +...+. .....+...|...++.++.+=++
T Consensus        22 ~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~-~~~~~~-~~~~g~~~~g~~~~l~a~~~~~~   99 (222)
T TIGR00803        22 NLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQM-VQSSAK-TLMFGNPVVGLSAVLSALLSSGF   99 (222)
T ss_pred             cccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeec-CCCCcc-ccccccHHHHHHHHHHHHHHHhh
Confidence            45567899999999999999999875322111000         00000 000000 00112345677777777777777


Q ss_pred             HHHHHHHHHhhcchHHHHHHHH-HHHHHHHHHHHHHHhcccc-ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 026497           73 WYILQAITLKEFPALIVMLCYQ-YFFSTILAAMFSLTVVTEL-SAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAG  150 (237)
Q Consensus        73 y~v~~~~~~~~~~~~~~~t~~~-~~~g~l~~~~~~~~~~~~~-~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~  150 (237)
                      -.+++++..|+.+..+-...++ .+++.+.........+... ..+...  ..+-...+..++..+++..+..+.+|+.+
T Consensus       100 ~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~~v~~vlk~~~  177 (222)
T TIGR00803       100 AGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFF--IGYPTAVWIVGLLNVGGGLCIGGVVRYAD  177 (222)
T ss_pred             hHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcc--cCCchHHHHHHHHHHhcCceeeehhHHhH
Confidence            7777777655542111111121 2222221111111111110 111100  00111112223456778888999999999


Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhh
Q 026497          151 PLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYV  194 (237)
Q Consensus       151 a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l  194 (237)
                      +...+....+.++++.+++++++||+++..+++|+.+++.|+++
T Consensus       178 ~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       178 NTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            99999999999999999999999999999999999999999765

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.63  E-value=2.3e-07  Score=81.16  Aligned_cols=187  Identities=18%  Similarity=0.227  Sum_probs=138.4

Q ss_pred             CccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 026497            1 MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAIT   80 (237)
Q Consensus         1 ~e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~   80 (237)
                      |.++..|+|++..+.+...+--.|+.+....+..+.     +      ...+..+..+|..++...-+.=++-+..+.++
T Consensus       126 mg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s-----~------~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~l  194 (327)
T KOG1581|consen  126 MGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDS-----S------SKSGRENSPIGILLLFGYLLFDGFTNATQDSL  194 (327)
T ss_pred             HHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCC-----c------cccCCCCchHhHHHHHHHHHHHhhHHhHHHHH
Confidence            346778999999999988888888866543322110     0      01233456789999999999888888899999


Q ss_pred             Hhhcc-hHHHHHHHHHHHHHHHHHHHHHHhcccc-c--cc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhh
Q 026497           81 LKEFP-ALIVMLCYQYFFSTILAAMFSLTVVTEL-S--AW-KLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVS  155 (237)
Q Consensus        81 ~~~~~-~~~~~t~~~~~~g~l~~~~~~~~~~~~~-~--~~-~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s  155 (237)
                      .+++. +++.++.+..+++++...... ...++. .  .+ ..++ ..+.-++.+.. +.+++..+.++-+++.|+-.-+
T Consensus       195 f~~~k~s~~~mM~~vNLf~~i~~~~~l-i~qg~~~~av~F~~~hp-~~~~Di~l~s~-~gavGQ~FI~~TI~~FGslt~t  271 (327)
T KOG1581|consen  195 FKKYKVSSLHMMFGVNLFSAILNGTYL-ILQGHLLPAVSFIKEHP-DVAFDILLYST-CGAVGQLFIFYTIERFGSLTFT  271 (327)
T ss_pred             hccCCccHhHHHHHHHHHHHHHHHHhh-hcCCCCchHHHHHHcCh-hHHHHHHHHHH-hhhhhhheehhhHhhcccHHHH
Confidence            88652 478888899999888777763 322211 1  11 1122 23443333344 5688888899999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhccccc
Q 026497          156 MFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK  201 (237)
Q Consensus       156 ~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~  201 (237)
                      .++..-=+++++++.+.+|.++++.|++|..+++.|+++-..-+++
T Consensus       272 ~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~  317 (327)
T KOG1581|consen  272 TIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK  317 (327)
T ss_pred             HHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999876655554

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.57  E-value=4.9e-06  Score=71.67  Aligned_cols=141  Identities=17%  Similarity=0.292  Sum_probs=103.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHH
Q 026497           57 ILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAA  136 (237)
Q Consensus        57 ~~G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~  136 (237)
                      ..+....++.++.|+......+...+.............+.+.+...+.... +. ...+...  ..+......+.+...
T Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~--~~~~~~~~~~~~~~~   81 (292)
T COG0697           6 LLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-EP-RGLRPAL--RPWLLLLLLALLGLA   81 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-hc-ccccccc--cchHHHHHHHHHHHH
Confidence            4678888888899999999888876652224555555666666553222211 11 0011111  113344556777889


Q ss_pred             HHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHH-HHhcCCcchhhHHHHHHHHHHHhhhhccccc
Q 026497          137 FLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGV-IIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK  201 (237)
Q Consensus       137 la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~-l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~  201 (237)
                      ..+.+|+.++++.++..++...+..|++..++++ ++++|++++.++.|.++.+.|+.++.++...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~  147 (292)
T COG0697          82 LPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG  147 (292)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence            9999999999999999999999999999999997 6779999999999999999999988776543

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.47  E-value=5.2e-06  Score=72.44  Aligned_cols=139  Identities=14%  Similarity=0.162  Sum_probs=107.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhcccccccc-ccchhhHHHHHHHHHHHH
Q 026497           57 ILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWK-LRLDVGLFAIAYSAVIGA  135 (237)
Q Consensus        57 ~~G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~-~~~~~~~~~llylgi~~t  135 (237)
                      ..|.++.+.|-+.|+.--.+.|- .++.+ +.++.++-.+.+..++........+....++ ...+..+......++. -
T Consensus         6 ~~Gil~~l~Ay~lwG~lp~y~kl-l~~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l-i   82 (293)
T COG2962           6 RKGILLALLAYLLWGLLPLYFKL-LEPLP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL-I   82 (293)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHH-HccCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH-H
Confidence            35999999999999987777554 56665 7889889888888777666555443222222 1222345555555543 4


Q ss_pred             HHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcc
Q 026497          136 AFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG  198 (237)
Q Consensus       136 ~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~  198 (237)
                      ..-+.+|.|+.++-....+|+=.++.|++.+++|.++++|+++..|+++.++-.+||....+.
T Consensus        83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~  145 (293)
T COG2962          83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL  145 (293)
T ss_pred             HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999999999999999999999999999999999999999999999876543

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=98.41  E-value=5.8e-06  Score=63.75  Aligned_cols=69  Identities=19%  Similarity=0.321  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHHHhccChhhhhhhh-hhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhccc
Q 026497          131 AVIGAAFLTTLLLWCLMRAGPLYVSMFK-PLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK  199 (237)
Q Consensus       131 gi~~t~la~~l~~~~l~~~~a~~~s~~~-~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~  199 (237)
                      .+..-+++|+++..++++++.+.+-... -+--+..++.|++++||++++.+++|..+|+.|+.......
T Consensus        36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            3456688999999999999988776664 57778889999999999999999999999999998875543

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.40  E-value=8.3e-06  Score=72.06  Aligned_cols=131  Identities=15%  Similarity=0.153  Sum_probs=92.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHH
Q 026497           59 GGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFL  138 (237)
Q Consensus        59 G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la  138 (237)
                      |.++.++++++|+..-+..|++. ..+ +.+..  .+.+|++++..+......+.  ...   ...+....++-..=+++
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~-g~~-~~~~~--~~~~g~l~~~~~~~~~~~~~--~~~---~~~~~~g~l~G~~w~ig   72 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG-GGP-YSQTL--GTTFGALILSIAIAIFVLPE--FWA---LSIFLVGLLSGAFWALG   72 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC-CCH-HHHHH--HHHHHHHHHHHHHHHHhCCc--ccc---cHHHHHHHHHHHHHHhh
Confidence            57889999999999988888764 333 33333  35566666655554433211  110   11111111111125677


Q ss_pred             HHHHHHHHhccChhhhhhhhh-hHHHHHHHHHHHHhcCCcchhh----HHHHHHHHHHHhhhhcc
Q 026497          139 TTLLLWCLMRAGPLYVSMFKP-LAILFSTVMGVIIFGDGLFLGS----LVGAVIIVIGFYVVMWG  198 (237)
Q Consensus       139 ~~l~~~~l~~~~a~~~s~~~~-l~Pv~a~ll~~l~lgE~l~~~~----~iG~~lIl~Gv~l~~~~  198 (237)
                      ...|+.++++.|.+.+-.+.+ ++|++..+++.+++||+.+..+    ++|.++++.|+++....
T Consensus        73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~  137 (290)
T TIGR00776        73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS  137 (290)
T ss_pred             hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence            799999999999999988888 9999999999999999999999    99999999998886444

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=98.31  E-value=5.8e-06  Score=71.92  Aligned_cols=182  Identities=12%  Similarity=0.127  Sum_probs=119.5

Q ss_pred             ceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 026497            4 LKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKE   83 (237)
Q Consensus         4 ~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~~~   83 (237)
                      -+++++++.++|+|++.-..|++.+-..+-...   ++|       ....++...||++++.+-+.-|...++-+|.+++
T Consensus       132 ~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~---~~p-------~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~  201 (372)
T KOG3912|consen  132 MFLNRTITGRQWLGILFVSLGLVIVGSLDVHLV---TDP-------YTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKK  201 (372)
T ss_pred             HHHhcccchhhHHHHHHHHhhhheeeeeecccc---cCC-------ccccccchhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence            368899999999999999999977631110000   000       0123456789999999999999999998888877


Q ss_pred             cc-hHHHHHHHHHHHHHHHHHHHHHH----hccc-----ccc-ccccchhhHH-----HHHHHHHHHHHHHHHHHH----
Q 026497           84 FP-ALIVMLCYQYFFSTILAAMFSLT----VVTE-----LSA-WKLRLDVGLF-----AIAYSAVIGAAFLTTLLL----  143 (237)
Q Consensus        84 ~~-~~~~~t~~~~~~g~l~~~~~~~~----~~~~-----~~~-~~~~~~~~~~-----~llylgi~~t~la~~l~~----  143 (237)
                      ++ +|+....|+.++|.+++..+...    ..++     +.. |. .+...|.     -.+++++.+..++-.++|    
T Consensus       202 ~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~e-D~~~~~~~~~e~p~l~val~~~~vSiAffNfaGl  280 (372)
T KOG3912|consen  202 SNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLE-DWGDAFAALQESPSLAVALIGFTVSIAFFNFAGL  280 (372)
T ss_pred             ccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchh-hHHHHHHHhcCCchhHHHHhhhhhheeeeeehhh
Confidence            53 58999999999996655544432    1121     110 11 0000111     123334444444444443    


Q ss_pred             HHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhh
Q 026497          144 WCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM  196 (237)
Q Consensus       144 ~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~  196 (237)
                      ..-|..++++-.+.-.+--.+--+++.....|.++..|+.|.++.+.|+++.+
T Consensus       281 sitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~  333 (372)
T KOG3912|consen  281 SITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYN  333 (372)
T ss_pred             HHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33566677777777666666666677777789999999999999999998764

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.28  E-value=4.5e-05  Score=67.24  Aligned_cols=127  Identities=9%  Similarity=0.005  Sum_probs=95.8

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHH
Q 026497           56 WILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGA  135 (237)
Q Consensus        56 ~~~G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t  135 (237)
                      ...|..++++++++|+......|...+..+ |..+.++.++++++++.++......   .+   ....+...+..|++ .
T Consensus        10 ~~~~~~~~~la~~~~~~~~~~~K~~~~~~~-~~~~~~~R~~~a~l~l~~~~~~~~~---~~---~~~~~~~~~~~g~~-~   81 (293)
T PRK10532         10 VWLPILLLLIAMASIQSGASLAKSLFPLVG-APGVTALRLALGTLILIAIFKPWRL---RF---AKEQRLPLLFYGVS-L   81 (293)
T ss_pred             cchHHHHHHHHHHHHHhhHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHhHHhc---cC---CHHHHHHHHHHHHH-H
Confidence            357899999999999999999898887775 8999999999999888765422111   11   11334445555654 5


Q ss_pred             HHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhh
Q 026497          136 AFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM  196 (237)
Q Consensus       136 ~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~  196 (237)
                      ++.+.++++++++.+++.++...+..|++..+++.    |++..  ..+.++.+.|+++..
T Consensus        82 ~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~--~~~~~i~~~Gv~li~  136 (293)
T PRK10532         82 GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVD--FVWVVLAVLGLWFLL  136 (293)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHH--HHHHHHHHHHHheee
Confidence            66778899999999999999999999999988873    65543  455666778887654

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.27  E-value=1.1e-05  Score=71.19  Aligned_cols=177  Identities=14%  Similarity=0.162  Sum_probs=130.5

Q ss_pred             ccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026497            2 EKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITL   81 (237)
Q Consensus         2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~   81 (237)
                      |.+++|.|+++.-+..+....+|...-...   +.                 .-...|-.+++...++-+.+.+..|+..
T Consensus       121 E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~---d~-----------------sf~~~gY~w~~~n~~~~a~~~v~~kk~v  180 (314)
T KOG1444|consen  121 EVLFFGKRPSNKVWASVFAMIIGSVAAAFT---DL-----------------SFNLRGYSWALANCLTTAAFVVYVKKSV  180 (314)
T ss_pred             HHhhcCcCchhhHHHHHHHHHHHHHhhccc---cc-----------------eecchhHHHHHHHHHHHHHHHHHHHHhh
Confidence            778999999999999999988888665421   11                 1123489999999999999999999876


Q ss_pred             hhcc-hHHHHHHHHHHHHHHHHHHHHHHhcccc------ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhh
Q 026497           82 KEFP-ALIVMLCYQYFFSTILAAMFSLTVVTEL------SAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYV  154 (237)
Q Consensus        82 ~~~~-~~~~~t~~~~~~g~l~~~~~~~~~~~~~------~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~  154 (237)
                      +... +.+.++.+..+++.+.+....+++++..      ..|.  ....+..+...++++-++.|..+ +..+..+++..
T Consensus       181 d~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~--~~~~~~~~~lScv~gf~isy~s~-~ct~~~SAtT~  257 (314)
T KOG1444|consen  181 DSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWS--DSSVLVVMLLSCVMGFGISYTSF-LCTRVNSATTT  257 (314)
T ss_pred             ccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhccccc--chhHHHHHHHHHHHHHHHHHHHH-HHHhhccccce
Confidence            5421 2467788888888888888887766421      1121  11346778888888888877654 67778888888


Q ss_pred             hhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhccccc
Q 026497          155 SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK  201 (237)
Q Consensus       155 s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~  201 (237)
                      ++.....=....+...++.|+++++..++|..+-++|=.+....+.+
T Consensus       258 tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~  304 (314)
T KOG1444|consen  258 TIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFR  304 (314)
T ss_pred             eehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhh
Confidence            88886666667777777778899999999999988776555555443

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.21  E-value=1.9e-05  Score=68.45  Aligned_cols=181  Identities=12%  Similarity=0.130  Sum_probs=127.9

Q ss_pred             cceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 026497            3 KLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLK   82 (237)
Q Consensus         3 ~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~~   82 (237)
                      .++-++|..........+-..|+++....+...               +.+. ...|..++-.|-++=|+-..++++..+
T Consensus       151 ifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~---------------sPNF-~~~Gv~mIsgALl~DA~iGNvQEk~m~  214 (367)
T KOG1582|consen  151 IFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQT---------------SPNF-NLIGVMMISGALLADAVIGNVQEKAMK  214 (367)
T ss_pred             eeeccccccHHHHHHHHHHHHHHHhhhhccccc---------------CCCc-ceeeHHHHHHHHHHHHHhhHHHHHHHh
Confidence            345567888888888888889998876543221               1122 247888888888888887778888777


Q ss_pred             hcch-HHHHHHHHHHHHHHHHHHHHHHhccccccccc---cchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhh
Q 026497           83 EFPA-LIVMLCYQYFFSTILAAMFSLTVVTELSAWKL---RLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFK  158 (237)
Q Consensus        83 ~~~~-~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~---~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~  158 (237)
                      .++. .-++.+++..+|.+.++..-...++-+..|..   ++.......++. -..+-++...-...++..||..++..+
T Consensus       215 ~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~-s~~gylG~~~VLalI~~fGA~~aatvT  293 (367)
T KOG1582|consen  215 MNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLF-SLAGYLGIVFVLALIKLFGALIAATVT  293 (367)
T ss_pred             hCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHH-HHHhHhhHHHHHHHHHHhchhHHHHHH
Confidence            6652 45677788888888777666655554444442   111111211111 123344444445667778999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcccc
Q 026497          159 PLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA  200 (237)
Q Consensus       159 ~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~  200 (237)
                      ..---++.+++++++..++|.+..-|+.+|++|+++....++
T Consensus       294 TaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~  335 (367)
T KOG1582|consen  294 TARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR  335 (367)
T ss_pred             HhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence            999999999999999999999999999999999999887763

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.07  E-value=0.00013  Score=63.69  Aligned_cols=166  Identities=16%  Similarity=0.176  Sum_probs=103.6

Q ss_pred             ceeeccCCCcchh----hHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHH
Q 026497            4 LKWRSKSSQAKSL----GTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAI   79 (237)
Q Consensus         4 ~~lrer~s~~~~~----Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~   79 (237)
                      ++++|..+..+++    ++++-++|+.+....+..+.            ..++..+...|.+.++++.+.|..|....|-
T Consensus        92 ~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~------------~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~  159 (269)
T PF06800_consen   92 LFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSD------------KSSSKSNMKKGILALLISTIGYWIYSVIPKA  159 (269)
T ss_pred             hhcCCCCCcchHHHHHHHHHHHHHHHHHhcccccccc------------ccccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence            5677877766553    56666777765542211100            0112334567999999999999999999654


Q ss_pred             HHhhcchHHHHHHHH---HHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhh
Q 026497           80 TLKEFPALIVMLCYQ---YFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSM  156 (237)
Q Consensus        80 ~~~~~~~~~~~t~~~---~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~  156 (237)
                      .  +. ++.....=|   ++.+++++....   ..... .+    ..|-.++ .|+ .=.++-.++..+.++.|.+.+-.
T Consensus       160 ~--~~-~~~~~~lPqaiGm~i~a~i~~~~~---~~~~~-~k----~~~~nil-~G~-~w~ignl~~~is~~~~G~a~af~  226 (269)
T PF06800_consen  160 F--HV-SGWSAFLPQAIGMLIGAFIFNLFS---KKPFF-EK----KSWKNIL-TGL-IWGIGNLFYLISAQKNGVATAFT  226 (269)
T ss_pred             c--CC-ChhHhHHHHHHHHHHHHHHHhhcc---ccccc-cc----chHHhhH-HHH-HHHHHHHHHHHhHHhccchhhhh
Confidence            2  23 244443333   333333332222   21111 11    1222221 122 23567778899999999999999


Q ss_pred             hhhhHHHHHHHHHHHHhcCCcchh----hHHHHHHHHHHHhh
Q 026497          157 FKPLAILFSTVMGVIIFGDGLFLG----SLVGAVIIVIGFYV  194 (237)
Q Consensus       157 ~~~l~Pv~a~ll~~l~lgE~l~~~----~~iG~~lIl~Gv~l  194 (237)
                      +.-+..+++.+.|.+++||+=+..    .++|.+||+.|..+
T Consensus       227 lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  227 LSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             HHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            999999999999999999998755    45688888887653

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.07  E-value=2.8e-06  Score=73.55  Aligned_cols=190  Identities=12%  Similarity=0.039  Sum_probs=126.5

Q ss_pred             cceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 026497            3 KLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLK   82 (237)
Q Consensus         3 ~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~~   82 (237)
                      .+++|+|-+.....+.++-+.|-.+     |.+..            +..+.-...|.++-.++.++-|+..++.||...
T Consensus       147 yvllkqkTs~~~~~~C~lIi~GF~l-----GvdqE------------~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~  209 (347)
T KOG1442|consen  147 YVLLKQKTSFFALGCCLLIILGFGL-----GVDQE------------GSTGTLSWIGVIFGVLASLAVALNAIYTKKVLP  209 (347)
T ss_pred             Hhhcccccccccceeehhheehhee-----ccccc------------cccCccchhhhHHHHHHHHHHHHHHHhhheecc
Confidence            5789999998888888777777533     11110            011222357999999999999999999887655


Q ss_pred             hcc-hHHHHHHHHHHHHHHHHHHHHHHhcccccccc---ccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhh
Q 026497           83 EFP-ALIVMLCYQYFFSTILAAMFSLTVVTELSAWK---LRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFK  158 (237)
Q Consensus        83 ~~~-~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~---~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~  158 (237)
                      ... .-+.++.+..+.+.++++|...+.++-...+.   ......|..+...|+++-.++|... +=+|-.+|-+=.+..
T Consensus       210 ~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg-~QIK~TSplThnISg  288 (347)
T KOG1442|consen  210 PVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTG-WQIKVTSPLTHNISG  288 (347)
T ss_pred             cccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheee-EEEEecccceeeecH
Confidence            432 25788999999999999888776543211111   1112357777777887777766532 223444443333333


Q ss_pred             hhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcccccccccccccC
Q 026497          159 PLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRG  210 (237)
Q Consensus       159 ~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~~~~~~~~~~  210 (237)
                      .---..=.++++.+++|..+..-|-+-++|+.|-....+.|++|++++.++.
T Consensus       289 TAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~~~~  340 (347)
T KOG1442|consen  289 TAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKASAQR  340 (347)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhccCC
Confidence            3333444678889999999999999999999998887777776666554433

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=98.06  E-value=0.00012  Score=55.55  Aligned_cols=68  Identities=19%  Similarity=0.191  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHhccChhhhhhh-hhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhccc
Q 026497          132 VIGAAFLTTLLLWCLMRAGPLYVSMF-KPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK  199 (237)
Q Consensus       132 i~~t~la~~l~~~~l~~~~a~~~s~~-~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~  199 (237)
                      +++-+++|.++..++++++.+.+-.. .-+--+..++.|++++||++++.+++|.++|+.|+...+...
T Consensus        37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~  105 (110)
T PRK09541         37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            44567788888888888888766544 446778889999999999999999999999999999876543

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=98.06  E-value=0.00016  Score=64.04  Aligned_cols=129  Identities=16%  Similarity=0.155  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHhhc-ch--HHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 026497           71 SAWYILQAITLKEF-PA--LIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLM  147 (237)
Q Consensus        71 a~y~v~~~~~~~~~-~~--~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~  147 (237)
                      ..|.++++++.++. ..  +..+++.|+++.++...+.......+.. -.    ..+...+..+ +...++-.+-+.+++
T Consensus        13 ~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~-~~~~~~~~~~~~al~   86 (303)
T PF08449_consen   13 CSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKS-RK----IPLKKYAILS-FLFFLASVLSNAALK   86 (303)
T ss_pred             HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCC-Cc----ChHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            34556777776553 23  7889999999988877766554431111 01    1122222233 356777788999999


Q ss_pred             ccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhccccccccc
Q 026497          148 RAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENT  205 (237)
Q Consensus       148 ~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~~~~~  205 (237)
                      +++...-.++-...|+..++++++++|++.+..++++.+++.+|+.+....+..+.++
T Consensus        87 ~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~  144 (303)
T PF08449_consen   87 YISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSS  144 (303)
T ss_pred             hCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccc
Confidence            9999999999999999999999999999999999999999999999887775544433

; GO: 0055085 transmembrane transport

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=97.95  E-value=7.4e-05  Score=64.95  Aligned_cols=184  Identities=16%  Similarity=0.213  Sum_probs=117.7

Q ss_pred             ccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccc--cCcccCcchhhHHHHHHHHHHHHHHHHHHHH
Q 026497            2 EKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQ--IQPLQSNWILGGFYLAAQAILISAWYILQAI   79 (237)
Q Consensus         2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~   79 (237)
                      .++.+++|.+.+|+..+++--+|+++-...+.++...   .+...+.  +..+..-|..|..+...+-+.-|...+++++
T Consensus       109 g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~---~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~  185 (330)
T KOG1583|consen  109 GWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS---KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQET  185 (330)
T ss_pred             HHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh---hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678899999999999999999997765433222210   0111111  1122334678999988999999988888888


Q ss_pred             HHhhcc-hHHHHHHHHHHHHHHHHHHHHHHhcccc-cccc--------------ccchhhHHHHHHHHHHHHHHHHHHH-
Q 026497           80 TLKEFP-ALIVMLCYQYFFSTILAAMFSLTVVTEL-SAWK--------------LRLDVGLFAIAYSAVIGAAFLTTLL-  142 (237)
Q Consensus        80 ~~~~~~-~~~~~t~~~~~~g~l~~~~~~~~~~~~~-~~~~--------------~~~~~~~~~llylgi~~t~la~~l~-  142 (237)
                      .-|++. ++-+..+|.-+.+-.    .-++...+. .+|.              ..-+..|..+++.    ...-|.|- 
T Consensus       186 ~Y~kyGKh~~EalFytH~LsLP----~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n----~L~Qy~Cik  257 (330)
T KOG1583|consen  186 TYQKYGKHWKEALFYTHFLSLP----LFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFN----VLTQYFCIK  257 (330)
T ss_pred             HHHHhcCChHHHHHHHHHhccc----hHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHH----HHHHHHHHH
Confidence            877764 356777776655433    333322221 0111              1111234443332    22222222 


Q ss_pred             --HHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhh
Q 026497          143 --LWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM  196 (237)
Q Consensus       143 --~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~  196 (237)
                        +..-.+..+-++++..++--.++.+++++.+..++++++++|.+++..|-++..
T Consensus       258 gVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa  313 (330)
T KOG1583|consen  258 GVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA  313 (330)
T ss_pred             hhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence              233344556678888899999999999999999999999999999999977654

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=97.93  E-value=0.00013  Score=64.36  Aligned_cols=167  Identities=21%  Similarity=0.214  Sum_probs=108.6

Q ss_pred             ccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcc--
Q 026497            8 SKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP--   85 (237)
Q Consensus         8 er~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~~~~~--   85 (237)
                      ||+++.-.+-+++-.+|+++++ +|..+                   -...|..+++++.++-++-=.+.+.+.++.|  
T Consensus       134 Ek~~w~L~l~v~lI~~Glflft-~KsTq-------------------f~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~  193 (349)
T KOG1443|consen  134 EKFRWALVLIVLLIAVGLFLFT-YKSTQ-------------------FNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSA  193 (349)
T ss_pred             HHHHHHHHHHHHHHhhheeEEE-ecccc-------------------eeehhHHHHHHHHHhhhhhHHHHHHHHhcCccc
Confidence            7888887777777778887765 44321                   1246888888777765553334444444432  


Q ss_pred             --hHHHHHHHHHHHHHHHHHHHHHHhcccc-c----cccccc-hhhHHHHHHHHHHHHHHHHHHH---HHHHhccChhhh
Q 026497           86 --ALIVMLCYQYFFSTILAAMFSLTVVTEL-S----AWKLRL-DVGLFAIAYSAVIGAAFLTTLL---LWCLMRAGPLYV  154 (237)
Q Consensus        86 --~~~~~t~~~~~~g~l~~~~~~~~~~~~~-~----~~~~~~-~~~~~~llylgi~~t~la~~l~---~~~l~~~~a~~~  154 (237)
                        +|+.......-.-.+.++|..+.+|+.. .    .|.... ...+..+.++++ +..++|.+-   +..+.+.+.-..
T Consensus       194 ~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l-~g~laF~l~~sEflLl~~Ts~ltl  272 (349)
T KOG1443|consen  194 KRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISL-GGLLAFLLEFSEFLLLSRTSSLTL  272 (349)
T ss_pred             cCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHH-HHHHHHHHHHHHHheeeeccceee
Confidence              3555555444444566777777777642 1    122111 112334444433 344444443   456778888888


Q ss_pred             hhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhh
Q 026497          155 SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV  195 (237)
Q Consensus       155 s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~  195 (237)
                      +++.-.--+-..++|..+++|+++...++|..+.+.|+.+-
T Consensus       273 SIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  273 SIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH  313 (349)
T ss_pred             eHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence            88888888999999999999999999999999999998764

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.87  E-value=0.00085  Score=52.99  Aligned_cols=131  Identities=12%  Similarity=0.116  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHH
Q 026497           60 GFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLT  139 (237)
Q Consensus        60 ~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~  139 (237)
                      .++.+++...-++...+..++.++..+|+.-+.+.+..|.+.+..+.++.++.  .+....+.+|+..+ -|++ .++--
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~~l-GG~l-G~~~V   78 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWAYL-GGLL-GVFFV   78 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHHhc-cHHH-HHHHH
Confidence            45667777888888888888877765589999999999999998888776653  12111112343322 3443 45556


Q ss_pred             HHHHHHHhccChhhhhhhhhh-HHHHHHHHHHH----HhcCCcchhhHHHHHHHHHHHhh
Q 026497          140 TLLLWCLMRAGPLYVSMFKPL-AILFSTVMGVI----IFGDGLFLGSLVGAVIIVIGFYV  194 (237)
Q Consensus       140 ~l~~~~l~~~~a~~~s~~~~l-~Pv~a~ll~~l----~lgE~l~~~~~iG~~lIl~Gv~l  194 (237)
                      ....+.++++|++.+...... |=+.+.+++.+    .-.+++++..++|.++++.|+++
T Consensus        79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            677788899999977666554 77777888875    23568999999999999999864

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=97.81  E-value=9.8e-05  Score=62.50  Aligned_cols=136  Identities=14%  Similarity=0.142  Sum_probs=101.9

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHHHHHHHhcccc-cccccc-chhhHHHHHHHH
Q 026497           55 NWILGGFYLAAQAILISAWYILQAITLKEFP-ALIVMLCYQYFFSTILAAMFSLTVVTEL-SAWKLR-LDVGLFAIAYSA  131 (237)
Q Consensus        55 ~~~~G~ll~llaa~~~a~y~v~~~~~~~~~~-~~~~~t~~~~~~g~l~~~~~~~~~~~~~-~~~~~~-~~~~~~~llylg  131 (237)
                      ..+.|-+++...+++-+.|.+..|+..+-.+ +...-++|..+.+-.++..+++++|... ...... ......++...|
T Consensus       152 ~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISg  231 (309)
T COG5070         152 ILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISG  231 (309)
T ss_pred             ccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHH
Confidence            3467999999999999999999887654211 2467788999999888888888877532 111111 112344566666


Q ss_pred             HHHHHHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Q 026497          132 VIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIG  191 (237)
Q Consensus       132 i~~t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~G  191 (237)
                      + ++..--++-.|.++-.+.+.-++...+.-.-..+.|.++++|+.+...+....+-...
T Consensus       232 l-~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGfls  290 (309)
T COG5070         232 L-CSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLS  290 (309)
T ss_pred             H-HHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHH
Confidence            6 3444445667899999999999999999999999999999999999999988877644

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.78  E-value=0.00065  Score=51.20  Aligned_cols=66  Identities=15%  Similarity=0.299  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHhccChhhh-hhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhc
Q 026497          132 VIGAAFLTTLLLWCLMRAGPLYV-SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW  197 (237)
Q Consensus       132 i~~t~la~~l~~~~l~~~~a~~~-s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~  197 (237)
                      +.+-+++|++...++|++|.+.+ +++.-+--+..++.|++++||++++.+++|..+|+.|+...+.
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            44567888888888888887755 4455567788899999999999999999999999999987643

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.78  E-value=0.00098  Score=50.54  Aligned_cols=65  Identities=15%  Similarity=0.222  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHHhccChhhhh-hhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhh
Q 026497          132 VIGAAFLTTLLLWCLMRAGPLYVS-MFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM  196 (237)
Q Consensus       132 i~~t~la~~l~~~~l~~~~a~~~s-~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~  196 (237)
                      +.+-+++|++...++|++|.+.+- ++.-+--+..++.+++++||++++.+++|.++|+.|+...+
T Consensus        42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            345678899999999999987654 44456667889999999999999999999999999998753

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.73  E-value=0.0011  Score=59.78  Aligned_cols=139  Identities=12%  Similarity=0.107  Sum_probs=92.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHH
Q 026497           57 ILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAA  136 (237)
Q Consensus        57 ~~G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~  136 (237)
                      ..|-++.++-+..-.....+..+   +.+.|...+.+..+.-.++..+..+.-. ....|.......|+--+.+++ .=+
T Consensus        16 ~lgQ~lsl~~~~t~~~s~~l~~~---~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~-~~~~~~~~~~~~~w~y~lla~-~Dv   90 (334)
T PF06027_consen   16 LLGQVLSLCITGTGTFSSLLANK---GVNIPTFQSFFNYVLLALVYTPILLYRR-GFKKWLKVLKRPWWKYFLLAL-LDV   90 (334)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHhc---CccCcHHHHHHHHHHHHHHHhhhhhhcc-ccccchhhcchhHHHHHHHHH-HHH
Confidence            35666666655555555555443   2223555565655544444444332211 111121111223443333454 457


Q ss_pred             HHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcccc
Q 026497          137 FLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA  200 (237)
Q Consensus       137 la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~  200 (237)
                      .|-++++.+.++.+.+.+.++....-++.+++++++|+|++++.|++|.++.+.|+.++.....
T Consensus        91 ~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~  154 (334)
T PF06027_consen   91 EANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV  154 (334)
T ss_pred             HHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence            8999999999999999999999999999999999999999999999999999999988766643

Some of the sequences in this family are annotated as putative membrane proteins.

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.71  E-value=0.0003  Score=62.64  Aligned_cols=119  Identities=17%  Similarity=0.247  Sum_probs=85.5

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHH
Q 026497           55 NWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIG  134 (237)
Q Consensus        55 ~~~~G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~  134 (237)
                      ++..|.++.+.++++.+....++|+-.+|.++ -..-.     +.   ....+        +.  . ..|+    .|+..
T Consensus         4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~-~~~~~-----~~---~~~~~--------l~--~-~~W~----~G~~~   59 (300)
T PF05653_consen    4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR-GSLRA-----GS---GGRSY--------LR--R-PLWW----IGLLL   59 (300)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccc-----cc---hhhHH--------Hh--h-HHHH----HHHHH
Confidence            46789999999999999999999987665421 00000     00   00000        00  0 1122    23334


Q ss_pred             HHHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhc
Q 026497          135 AAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW  197 (237)
Q Consensus       135 t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~  197 (237)
                      .+++..+.+.++...|++-++++..+.=++.++++..++||+++..+++|+++++.|..+...
T Consensus        60 ~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~  122 (300)
T PF05653_consen   60 MVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI  122 (300)
T ss_pred             HhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence            455666777788888999999999999999999999999999999999999999999876543

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.68  E-value=0.00035  Score=52.54  Aligned_cols=66  Identities=24%  Similarity=0.396  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHhccChhhh-hhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcc
Q 026497          133 IGAAFLTTLLLWCLMRAGPLYV-SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG  198 (237)
Q Consensus       133 ~~t~la~~l~~~~l~~~~a~~~-s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~  198 (237)
                      ++-.++|.+...++|+++...+ +++.-+--+..++.|++++||++++.+++|..+++.|+...+..
T Consensus        38 v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~  104 (106)
T COG2076          38 VGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG  104 (106)
T ss_pred             HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence            3457788888888888887654 45555666788999999999999999999999999999876654

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.58  E-value=0.00092  Score=49.11  Aligned_cols=57  Identities=26%  Similarity=0.396  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHhccChhhh-hhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHH
Q 026497          132 VIGAAFLTTLLLWCLMRAGPLYV-SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVII  188 (237)
Q Consensus       132 i~~t~la~~l~~~~l~~~~a~~~-s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lI  188 (237)
                      +.+-++++.++..++|+++.+.+ +++.-+-.+...+.|++++||++++.+++|..+|
T Consensus        36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            34668889999999999999988 4456689999999999999999999999999886

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.41  E-value=0.00013  Score=64.94  Aligned_cols=69  Identities=28%  Similarity=0.291  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHHhccChhhhhhhhhhH-HHHHHHHHHHHhcCC--cch----hhHHHHHHHHHHHhhhhcccc
Q 026497          132 VIGAAFLTTLLLWCLMRAGPLYVSMFKPLA-ILFSTVMGVIIFGDG--LFL----GSLVGAVIIVIGFYVVMWGKA  200 (237)
Q Consensus       132 i~~t~la~~l~~~~l~~~~a~~~s~~~~l~-Pv~a~ll~~l~lgE~--l~~----~~~iG~~lIl~Gv~l~~~~~~  200 (237)
                      +.+...-....|+++++.+++.+.+..+.. -.++++-|.++++|-  .+.    ....|..+++.|+++....|+
T Consensus       220 v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~  295 (300)
T PF05653_consen  220 VVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKD  295 (300)
T ss_pred             HHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCc
Confidence            445566666678999999999887776664 456677778888884  455    345678888899988655433

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.30  E-value=0.0048  Score=55.88  Aligned_cols=136  Identities=13%  Similarity=0.087  Sum_probs=86.6

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-----HHhccccc-cccccchhhHHHHHH
Q 026497           56 WILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFS-----LTVVTELS-AWKLRLDVGLFAIAY  129 (237)
Q Consensus        56 ~~~G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~-----~~~~~~~~-~~~~~~~~~~~~lly  129 (237)
                      ...|.++.+++++||+.+.+-+|| .|+.+  ++.. |- . +.++..++.     .+..++.. .....+...+..-+.
T Consensus         5 ~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~--wE~~-W~-v-~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l   78 (345)
T PRK13499          5 IILGIIWHLIGGASSGSFYAPFKK-VKKWS--WETM-WS-V-GGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFL   78 (345)
T ss_pred             hHHHHHHHHHHHHHhhcccccccc-cCCCc--hhHH-HH-H-HHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHH
Confidence            468999999999999999998888 45543  4443 43 1 222221111     11112111 111111122322222


Q ss_pred             HHHHHHHHHHHHHHHHHhccChhhhhhh-hhhHHHHHHHHHHHHhcCCc-------chhhHHHHHHHHHHHhhhhcc
Q 026497          130 SAVIGAAFLTTLLLWCLMRAGPLYVSMF-KPLAILFSTVMGVIIFGDGL-------FLGSLVGAVIIVIGFYVVMWG  198 (237)
Q Consensus       130 lgi~~t~la~~l~~~~l~~~~a~~~s~~-~~l~Pv~a~ll~~l~lgE~l-------~~~~~iG~~lIl~Gv~l~~~~  198 (237)
                      .|+ .=.++...+..+++++|.+++-.+ +-++-+.+++++.+++||=-       ....++|.+++++|+.+..+.
T Consensus        79 ~G~-~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A  154 (345)
T PRK13499         79 FGA-LWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA  154 (345)
T ss_pred             HHH-HHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence            233 357889999999999999976655 45688999999999999732       234678999999999998774

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=97.29  E-value=0.00026  Score=61.43  Aligned_cols=136  Identities=8%  Similarity=0.117  Sum_probs=88.3

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHH-HHHHHH
Q 026497           55 NWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAI-AYSAVI  133 (237)
Q Consensus        55 ~~~~G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-lylgi~  133 (237)
                      ..++|.++.-++ ..+....+..++...+.  |....-..+++--++..|..+.. .++. |.......|+.+ -++|. 
T Consensus        35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e~~--p~e~a~~r~l~~mlit~pcliy~-~~~v-~gp~g~R~~LiLRg~mG~-  108 (346)
T KOG4510|consen   35 KPNLGLLLLTVS-YFFNSCMVVSTKVLEND--PMELASFRLLVRMLITYPCLIYY-MQPV-IGPEGKRKWLILRGFMGF-  108 (346)
T ss_pred             CCccCceehhhH-HHHhhHHHhhhhhhccC--hhHhhhhhhhhehhhhheEEEEE-eeee-ecCCCcEEEEEeehhhhh-
Confidence            456788888888 66666777777776653  44444343333222222221111 1110 100011112211 22232 


Q ss_pred             HHHHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhccc
Q 026497          134 GAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK  199 (237)
Q Consensus       134 ~t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~  199 (237)
                         .+..+.++++++++-+.+.++++..|+++.+++|++|+|+.+....+|..+.+.|+.+..+..
T Consensus       109 ---tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp  171 (346)
T KOG4510|consen  109 ---TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP  171 (346)
T ss_pred             ---hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence               334556788999999999999999999999999999999999999999999999999877764

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.08  E-value=0.0071  Score=52.91  Aligned_cols=106  Identities=14%  Similarity=0.205  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhh-hHHHHHHHHHHHH
Q 026497           94 QYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKP-LAILFSTVMGVII  172 (237)
Q Consensus        94 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~-l~Pv~a~ll~~l~  172 (237)
                      -+.+|++++.....+..++  .++.. ...++.-+..|+ .=.++...++++.+++|.+++-+... ++=+.+.++|+++
T Consensus        18 G~t~Gali~alv~~~~~~p--~~~~~-~~~~~~~~lsG~-~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~   93 (269)
T PF06800_consen   18 GTTIGALIFALVVFLFRQP--AFSMS-GTSFIVAFLSGA-FWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLF   93 (269)
T ss_pred             HHHHHHHHHHHHHHHHhCC--CcchH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhh
Confidence            3445565555555444332  12110 112322223333 45788899999999999999998885 4566689999999


Q ss_pred             hcCCcchhh----HHHHHHHHHHHhhhhccccccc
Q 026497          173 FGDGLFLGS----LVGAVIIVIGFYVVMWGKAKEE  203 (237)
Q Consensus       173 lgE~l~~~~----~iG~~lIl~Gv~l~~~~~~~~~  203 (237)
                      +||--+..+    +++.++|+.|+++..++++++.
T Consensus        94 fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~  128 (269)
T PF06800_consen   94 FGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSD  128 (269)
T ss_pred             cCCCCCcchHHHHHHHHHHHHHHHHHhcccccccc
Confidence            999665444    4477889999998877755444

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.06  E-value=0.028  Score=44.93  Aligned_cols=139  Identities=11%  Similarity=0.125  Sum_probs=90.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHH
Q 026497           58 LGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAF  137 (237)
Q Consensus        58 ~G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~l  137 (237)
                      +..++.+++..+-....-...|+.+...+|+.-..+.+..|++.+..+.++.++.+. +....+.+|+... -|+++.. 
T Consensus         5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~-~a~~~~~pwW~~~-GG~lGa~-   81 (150)
T COG3238           5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPG-LAAVASAPWWAWI-GGLLGAI-   81 (150)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhhccCCchHHHH-ccchhhh-
Confidence            456667777777777777878877766568888999999999999988887554321 2111112233221 1222211 


Q ss_pred             HHHHHHHHHhccChh-hhhhhhhhHHHHHHHHHHHHhc----CCcchhhHHHHHHHHHHHhhhhccc
Q 026497          138 LTTLLLWCLMRAGPL-YVSMFKPLAILFSTVMGVIIFG----DGLFLGSLVGAVIIVIGFYVVMWGK  199 (237)
Q Consensus       138 a~~l~~~~l~~~~a~-~~s~~~~l~Pv~a~ll~~l~lg----E~l~~~~~iG~~lIl~Gv~l~~~~~  199 (237)
                      --+.=.....++|++ .+.....-|-+.+++++.+=+.    .++++..++|.++++.|+++..+++
T Consensus        82 ~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~~  148 (150)
T COG3238          82 FVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRFG  148 (150)
T ss_pred             hhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcccc
Confidence            112224567788876 4455555677888888876654    5789999999999999976654443

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=96.84  E-value=0.0039  Score=53.84  Aligned_cols=66  Identities=17%  Similarity=0.285  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcccccc
Q 026497          137 FLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKE  202 (237)
Q Consensus       137 la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~~  202 (237)
                      +.-.+.+.++++++|+.--+...+..++++++++++|+.+++..||++..+...|+.++.......
T Consensus        29 ~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~   94 (244)
T PF04142_consen   29 IQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS   94 (244)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence            445667789999999999999999999999999999999999999999999999999887765543

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK13499 rhamnose-proton symporter; Provisional

Probab=96.68  E-value=0.28  Score=44.58  Aligned_cols=178  Identities=13%  Similarity=0.123  Sum_probs=94.9

Q ss_pred             CcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHH-------HHHHHHH-hh
Q 026497           12 QAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWY-------ILQAITL-KE   83 (237)
Q Consensus        12 ~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~-------v~~~~~~-~~   83 (237)
                      ..-.+|+++.++|+++.... |....      ...+++...+.+...|.++.+++.+.+++|.       ...+... ..
T Consensus       135 ~~~~~gv~liliGi~l~s~A-g~~k~------~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g  207 (345)
T PRK13499        135 RMTLLGVLVALIGVAIVGRA-GQLKE------RKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALG  207 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-hhhcc------cccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcC
Confidence            34567999999999887531 11000      0000000123456789999999999999999       4322211 11


Q ss_pred             cchHHHHHHH---HHHHHHHHHHH-HHHH---hccccccc-cccc-hhh-HHHHHHHHH--HHHHHHHHHHHHHHhccCh
Q 026497           84 FPALIVMLCY---QYFFSTILAAM-FSLT---VVTELSAW-KLRL-DVG-LFAIAYSAV--IGAAFLTTLLLWCLMRAGP  151 (237)
Q Consensus        84 ~~~~~~~t~~---~~~~g~l~~~~-~~~~---~~~~~~~~-~~~~-~~~-~~~llylgi--~~t~la~~l~~~~l~~~~a  151 (237)
                      .+ +.....-   .++.|+.+..+ +..+   -.++.... .... ... +-..++..+  +.=.+++..|..+-++.|.
T Consensus       208 ~~-~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~  286 (345)
T PRK13499        208 VD-PLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGA  286 (345)
T ss_pred             CC-chHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            22 2222222   22355544433 2221   11111101 1111 011 122222111  1234556677777778766


Q ss_pred             hhhhh---hh-hhHHHHHHHHHHHHhcCCcc------hhhHHHHHHHHHHHhhhhcc
Q 026497          152 LYVSM---FK-PLAILFSTVMGVIIFGDGLF------LGSLVGAVIIVIGFYVVMWG  198 (237)
Q Consensus       152 ~~~s~---~~-~l~Pv~a~ll~~l~lgE~l~------~~~~iG~~lIl~Gv~l~~~~  198 (237)
                      .....   +. -+.-+++.+.|. ++||.=+      ...++|.++++.|..+...+
T Consensus       287 ~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~  342 (345)
T PRK13499        287 QYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG  342 (345)
T ss_pred             ccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence            54443   33 455589999998 5999877      66789999999998876654

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=96.16  E-value=0.0057  Score=54.77  Aligned_cols=120  Identities=16%  Similarity=0.175  Sum_probs=86.0

Q ss_pred             HHHHHHHHHh--hcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 026497           73 WYILQAITLK--EFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAG  150 (237)
Q Consensus        73 y~v~~~~~~~--~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~  150 (237)
                      ++++.|+.++  .++-|.+++..+...+.+.......+-..+...  ......+..++-+|+ .-.++.++=+.++++.+
T Consensus        32 ~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~--~~~~~~~~~llpl~~-~~~~~~v~~n~Sl~~v~  108 (316)
T KOG1441|consen   32 VIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSK--ISSKLPLRTLLPLGL-VFCISHVLGNVSLSYVP  108 (316)
T ss_pred             eEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCc--cccccchHHHHHHHH-HHHHHHHhcchhhhccc
Confidence            4445677777  455578888887777777766665443322211  112234666777776 46788899999999999


Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhh
Q 026497          151 PLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV  195 (237)
Q Consensus       151 a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~  195 (237)
                      .+.+=..-.++|++.+++++++.+|+.+.....-.+.|+.|+.+.
T Consensus       109 VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ia  153 (316)
T KOG1441|consen  109 VSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIA  153 (316)
T ss_pred             hhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEe
Confidence            999999999999999999999999999886555555555555443

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=95.67  E-value=0.034  Score=46.56  Aligned_cols=175  Identities=15%  Similarity=0.199  Sum_probs=97.8

Q ss_pred             cceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 026497            3 KLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLK   82 (237)
Q Consensus         3 ~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~~   82 (237)
                      ...+++|+...|++..++++.|++++...++                  ...+...|..+...++..-|+|-++-|+...
T Consensus        98 ~IVL~D~~~~~kIlaailAI~GiVmiay~DN------------------~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iG  159 (290)
T KOG4314|consen   98 IIVLGDRFMGFKILAAILAIGGIVMIAYADN------------------EHADEIIGIACAVGSAFMAALYKVLFKMFIG  159 (290)
T ss_pred             HHHhccchhhhhHHHHHHHhCcEEEEEeccc------------------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3568999999999999999999987752111                  1223468999999999999999999998876


Q ss_pred             hcc--hH-HHHHHHHHH---HHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhh
Q 026497           83 EFP--AL-IVMLCYQYF---FSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSM  156 (237)
Q Consensus        83 ~~~--~~-~~~t~~~~~---~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~  156 (237)
                      +.+  +. .-+....++   +-....++++ +.+  ...|+.-...+|..+.-.+.+..++ -++.+.++..+.|-..|+
T Consensus       160 nAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~-~T~--VE~~qsFA~~PWG~l~G~A~L~lAF-N~~iN~GiaL~~PilISi  235 (290)
T KOG4314|consen  160 NANFGDAAHFMSCLGFFNLCFISFPALILA-FTG--VEHLQSFAAAPWGCLCGAAGLSLAF-NFLINFGIALLNPILISI  235 (290)
T ss_pred             cCcchhHHHHHHHHHHHHHHHHhhhHHHHH-Hhc--hHHHHHHhhCCchhhhhHHHHHHHH-hhheeehhhhhchhhhee
Confidence            542  11 111111111   1111111111 111  1122200012244333222222111 233455666666655555


Q ss_pred             hhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhccc
Q 026497          157 FKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK  199 (237)
Q Consensus       157 ~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~  199 (237)
                      -+..--.--.....++=+-.++-....|..+|..|.++...+.
T Consensus       236 G~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~  278 (290)
T KOG4314|consen  236 GMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPE  278 (290)
T ss_pred             hheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheeccc
Confidence            4444333334455544444567778889999999988766653

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=95.65  E-value=0.0078  Score=51.81  Aligned_cols=133  Identities=11%  Similarity=0.046  Sum_probs=85.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHH
Q 026497           59 GGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFL  138 (237)
Q Consensus        59 G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la  138 (237)
                      ..++.++-++.|...-+...|.-.   +|.+-+ .-+.+|++.+.+..+++-.+...+     ..++.-+..|. -=.++
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~GG---~p~qQ~-lGtT~GALifaiiv~~~~~p~~T~-----~~~iv~~isG~-~Ws~G   72 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKFGG---KPYQQT-LGTTLGALIFAIIVFLFVSPELTL-----TIFIVGFISGA-FWSFG   72 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeecCC---ChhHhh-hhccHHHHHHHHHHheeecCccch-----hhHHHHHHhhh-Hhhhh
Confidence            456778888999876666444322   244433 445567776666555442221111     11221111222 23567


Q ss_pred             HHHHHHHHhccChhhhhhhhh-hHHHHHHHHHHHHhcCCcchhhH----HHHHHHHHHHhhhhccccc
Q 026497          139 TTLLLWCLMRAGPLYVSMFKP-LAILFSTVMGVIIFGDGLFLGSL----VGAVIIVIGFYVVMWGKAK  201 (237)
Q Consensus       139 ~~l~~~~l~~~~a~~~s~~~~-l~Pv~a~ll~~l~lgE~l~~~~~----iG~~lIl~Gv~l~~~~~~~  201 (237)
                      ...++++++..|.+++.+..+ ++-|-+.++|++.+||=-+..++    ++.++++.|+++..+++|.
T Consensus        73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~  140 (288)
T COG4975          73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRN  140 (288)
T ss_pred             hhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccc
Confidence            788999999999999998776 47788899999999997776654    3567888999987666543

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=95.17  E-value=0.17  Score=44.05  Aligned_cols=25  Identities=12%  Similarity=0.231  Sum_probs=18.9

Q ss_pred             chhhHHHHHHHHHHHhhhhcccccc
Q 026497          178 FLGSLVGAVIIVIGFYVVMWGKAKE  202 (237)
Q Consensus       178 ~~~~~iG~~lIl~Gv~l~~~~~~~~  202 (237)
                      .+...+|.+++++|..+...-|..+
T Consensus       115 ~~Ln~~G~~l~~~~~~~f~fik~~~  139 (254)
T PF07857_consen  115 PWLNYIGVALVLVSGIIFSFIKSEE  139 (254)
T ss_pred             hHHHHHHHHHHHHHHHheeeecCCC
Confidence            5778999999999987766555444

The region concerned is approximately 280 residues long.

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=94.88  E-value=0.1  Score=39.81  Aligned_cols=59  Identities=17%  Similarity=0.216  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHhccChhhhhhhh-hhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhh
Q 026497          136 AFLTTLLLWCLMRAGPLYVSMFK-PLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYV  194 (237)
Q Consensus       136 ~la~~l~~~~l~~~~a~~~s~~~-~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l  194 (237)
                      ..+-.+|++.+++.+-+.+.+.. .+.=+++++.++++.+|..+...++|+++|+.|+.+
T Consensus        52 q~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   52 QSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             HHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence            34456788889999999888885 778889999998777777788899999999999865

Many members are annotated as potential transmembrane proteins.

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=94.58  E-value=0.04  Score=46.13  Aligned_cols=63  Identities=16%  Similarity=0.290  Sum_probs=57.1

Q ss_pred             HHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcccc
Q 026497          138 LTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA  200 (237)
Q Consensus       138 a~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~  200 (237)
                      +-+.|..++++++|+.++....-.--|..+++|+++|+++....++..++-+.|+.+..+..+
T Consensus        66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN  128 (290)
T KOG4314|consen   66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN  128 (290)
T ss_pred             CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence            467788999999999999999999999999999999999999999999999999887665543

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.09  E-value=0.02  Score=51.03  Aligned_cols=122  Identities=16%  Similarity=0.170  Sum_probs=82.7

Q ss_pred             cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHH
Q 026497           53 QSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAV  132 (237)
Q Consensus        53 ~~~~~~G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi  132 (237)
                      +.++..|.++.+.+.+..+...++.||-.+|.. .   ...+             . +++.......  ..|+    .|+
T Consensus        16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~-~---~~~r-------------a-~~gg~~yl~~--~~Ww----~G~   71 (335)
T KOG2922|consen   16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAG-A---SGLR-------------A-GEGGYGYLKE--PLWW----AGM   71 (335)
T ss_pred             ccCceeeeeehhhccEEEeeehhhhHHHHHHHh-h---hccc-------------c-cCCCcchhhh--HHHH----HHH
Confidence            345678999999999999998888777665531 1   0000             0 0111111110  1132    344


Q ss_pred             HHHHHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcc
Q 026497          133 IGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG  198 (237)
Q Consensus       133 ~~t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~  198 (237)
                      +..+++-..=+.+-...|++.++.+..+.-++.++++..+++|++++...+|+++.++|-.+....
T Consensus        72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h  137 (335)
T KOG2922|consen   72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIH  137 (335)
T ss_pred             HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEe
Confidence            455555555555556678899999999999999999999999999999999999999996544333

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=93.49  E-value=1.7  Score=32.68  Aligned_cols=38  Identities=18%  Similarity=0.287  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcccc
Q 026497          163 LFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA  200 (237)
Q Consensus       163 v~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~  200 (237)
                      +.+.++++.+-|++++...++|..+.+.|+.+..+.+|
T Consensus        69 ~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR  106 (107)
T PF02694_consen   69 VASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR  106 (107)
T ss_pred             HHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence            77889999999999999999999999999988877654

; GO: 0016020 membrane

>PRK02237 hypothetical protein; Provisional

Probab=93.11  E-value=2.9  Score=31.52  Aligned_cols=38  Identities=21%  Similarity=0.175  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcccc
Q 026497          163 LFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA  200 (237)
Q Consensus       163 v~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~  200 (237)
                      +.+.+++|.+-|++++...++|.++.+.|+.+..+.+|
T Consensus        71 ~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR  108 (109)
T PRK02237         71 AGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR  108 (109)
T ss_pred             HHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence            67789999999999999999999999999988776654

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=92.61  E-value=0.12  Score=47.12  Aligned_cols=66  Identities=14%  Similarity=0.193  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhccccc
Q 026497          136 AFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK  201 (237)
Q Consensus       136 ~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~  201 (237)
                      .+|-+.++.++++...+...+....--+|+.++|.++.+|++++...++.++-+.|++++..++.+
T Consensus       170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~  235 (416)
T KOG2765|consen  170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSK  235 (416)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccc
Confidence            467778899999999999999999999999999999999999999999999999999998777543

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=92.24  E-value=3.3  Score=37.53  Aligned_cols=139  Identities=17%  Similarity=0.126  Sum_probs=80.6

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH-hc-cccc-cccccchhhHHHHHHHHH
Q 026497           56 WILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLT-VV-TELS-AWKLRLDVGLFAIAYSAV  132 (237)
Q Consensus        56 ~~~G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~-~~-~~~~-~~~~~~~~~~~~llylgi  132 (237)
                      ...|.++..+++++-+.+.+=.||. |+.+ --..-..+.+++-+ ..|.... .. ++.. .....+...+....+.|+
T Consensus         5 ii~Gii~h~iGg~~~~sfy~P~kkv-k~Ws-WEs~Wlv~gi~swl-i~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~   81 (344)
T PF06379_consen    5 IILGIIFHAIGGFASGSFYVPFKKV-KGWS-WESYWLVQGIFSWL-IVPWLWALLAIPDFFSIYSATPASTLFWTFLFGV   81 (344)
T ss_pred             HHHHHHHHHHHHHHhhhhccchhhc-CCcc-HHHHHHHHHHHHHH-HHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence            4689999999999999888877775 4443 22222234444433 3333221 11 2211 111111122333333333


Q ss_pred             HHHHHHHHHHHHHHhccChhh-hhhhhhhHHHHHHHHHHHHhcC-------CcchhhHHHHHHHHHHHhhhhcc
Q 026497          133 IGAAFLTTLLLWCLMRAGPLY-VSMFKPLAILFSTVMGVIIFGD-------GLFLGSLVGAVIIVIGFYVVMWG  198 (237)
Q Consensus       133 ~~t~la~~l~~~~l~~~~a~~-~s~~~~l~Pv~a~ll~~l~lgE-------~l~~~~~iG~~lIl~Gv~l~~~~  198 (237)
                      + =+++=..|-.+++++|-+. .++..-+.-+++.++--++.|+       +-....++|.++.++|+.+.-+.
T Consensus        82 l-WGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A  154 (344)
T PF06379_consen   82 L-WGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA  154 (344)
T ss_pred             H-HhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH
Confidence            2 3566778889999999773 4455555666666665555443       22456788999999999887655

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=92.02  E-value=0.48  Score=42.83  Aligned_cols=59  Identities=19%  Similarity=0.183  Sum_probs=54.4

Q ss_pred             HHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcc
Q 026497          140 TLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG  198 (237)
Q Consensus       140 ~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~  198 (237)
                      .+++.++.+++|+.-.+...+--+.++++.+++|+++++..||...++...|+.+++..
T Consensus       107 nl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~  165 (345)
T KOG2234|consen  107 NLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLP  165 (345)
T ss_pred             hHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcc
Confidence            46678889999999999999999999999999999999999999999999999988744

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=91.08  E-value=0.67  Score=40.00  Aligned_cols=128  Identities=13%  Similarity=0.078  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHHhh-cc----------hHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHH
Q 026497           68 ILISAWYILQAITLKE-FP----------ALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAA  136 (237)
Q Consensus        68 ~~~a~y~v~~~~~~~~-~~----------~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~  136 (237)
                      +||-.|.+.+.|+.|. |.          -.+++.+.||..-.++.=++..+....-  .+..  ..|......  ..-.
T Consensus        23 vCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~~--~D~t--~~~~YaAcs--~sYL   96 (337)
T KOG1580|consen   23 VCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKKTE--IDNT--PTKMYAACS--ASYL   96 (337)
T ss_pred             heehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeeccccc--ccCC--cchHHHHHH--HHHH
Confidence            7899999999998764 32          1466777788777765544333222110  1111  122221111  1223


Q ss_pred             HHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhccccc
Q 026497          137 FLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK  201 (237)
Q Consensus       137 la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~  201 (237)
                      +|..--|.+++..+--..-+--.--|+=.+++|+++.+.+-+|....-..+|++|+.+..+++++
T Consensus        97 lAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~K  161 (337)
T KOG1580|consen   97 LAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENK  161 (337)
T ss_pred             HHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccc
Confidence            44555677888877555555566778888999999999999999999999999999998877543

>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function

Probab=90.04  E-value=0.34  Score=36.28  Aligned_cols=30  Identities=20%  Similarity=0.289  Sum_probs=26.5

Q ss_pred             HHHHHHHhcCCcchhhHHHHHHHHHHHhhh
Q 026497          166 TVMGVIIFGDGLFLGSLVGAVIIVIGFYVV  195 (237)
Q Consensus       166 ~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~  195 (237)
                      +.++++++||++++.++.|.++++.+++.+
T Consensus        77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fi  106 (108)
T PF04342_consen   77 APFSVFYLGEPLKWNYLWAFLCILGAVYFI  106 (108)
T ss_pred             HHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence            456788999999999999999999998764

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.93  E-value=5.4  Score=35.68  Aligned_cols=114  Identities=13%  Similarity=0.187  Sum_probs=78.1

Q ss_pred             HHHHHHHHhhcc--hHHHHHHHHHHHHHHHHHHHHHH--hccccccccccchhhH--HHHHHHHHHHHHHHHHHHHHHHh
Q 026497           74 YILQAITLKEFP--ALIVMLCYQYFFSTILAAMFSLT--VVTELSAWKLRLDVGL--FAIAYSAVIGAAFLTTLLLWCLM  147 (237)
Q Consensus        74 ~v~~~~~~~~~~--~~~~~t~~~~~~g~l~~~~~~~~--~~~~~~~~~~~~~~~~--~~llylgi~~t~la~~l~~~~l~  147 (237)
                      ++..|-.+.+++  ..+.+...|.+...+.....-..  .+.++-.|..  ...|  .+++|.+-+-|+.      .+++
T Consensus        28 ~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~--~kk~~P~~~lf~~~i~t~~------~slk   99 (314)
T KOG1444|consen   28 TVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRT--AKKWFPVSLLFVGMLFTGS------KSLK   99 (314)
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHH--HHHHccHHHHHHHHHHHcc------cccc
Confidence            344454454443  34555669999888777665543  1112222321  2234  3566655544443      7889


Q ss_pred             ccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhh
Q 026497          148 RAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV  195 (237)
Q Consensus       148 ~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~  195 (237)
                      +++.....++-.+.|+..++....++|-+++...+.....++.|-.+.
T Consensus       100 ~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~  147 (314)
T KOG1444|consen  100 YLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAA  147 (314)
T ss_pred             ccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999888888775543

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=87.37  E-value=28  Score=33.40  Aligned_cols=42  Identities=14%  Similarity=0.118  Sum_probs=23.4

Q ss_pred             hhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhh
Q 026497          155 SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM  196 (237)
Q Consensus       155 s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~  196 (237)
                      ..+....|+-+.+.|.+.-.-.+.....++++.++++..+..
T Consensus       350 ~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  350 MVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            344555788888888765444444444455554444444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.96  E-value=1  Score=33.39  Aligned_cols=32  Identities=16%  Similarity=0.227  Sum_probs=28.5

Q ss_pred             HHHHHHHhcCCcchhhHHHHHHHHHHHhhhhc
Q 026497          166 TVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW  197 (237)
Q Consensus       166 ~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~  197 (237)
                      +.++++.++|++.|.++.|..+++.|++...+
T Consensus        84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr  115 (116)
T COG3169          84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR  115 (116)
T ss_pred             HHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence            56789999999999999999999999987654

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=86.84  E-value=21  Score=31.31  Aligned_cols=100  Identities=9%  Similarity=0.007  Sum_probs=71.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhcccccccccc-chhhHHHHHHHHHHHHHH
Q 026497           59 GGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLR-LDVGLFAIAYSAVIGAAF  137 (237)
Q Consensus        59 G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~-~~~~~~~llylgi~~t~l  137 (237)
                      -.++++.++++--...-+.|.+..... +.-.+.+-..++++++.++.    +   +|... ...+|..++..|+ +.+.
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP~vG-~~g~t~lRl~~aaLIll~l~----R---Pwr~r~~~~~~~~~~~yGv-sLg~   83 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFPLVG-AAGVTALRLAIAALILLALF----R---PWRRRLSKPQRLALLAYGV-SLGG   83 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHccccC-hhhHHHHHHHHHHHHHHHHh----h---HHHhccChhhhHHHHHHHH-HHHH
Confidence            466777777777777777787776664 67888888888988887654    2   23211 1245777766676 5666


Q ss_pred             HHHHHHHHHhccChhhhhhhhhhHHHHHHH
Q 026497          138 LTTLLLWCLMRAGPLYVSMFKPLAILFSTV  167 (237)
Q Consensus       138 a~~l~~~~l~~~~a~~~s~~~~l~Pv~a~l  167 (237)
                      -..+++.++++++-..+-.+-++-|+.-.+
T Consensus        84 MNl~FY~si~riPlGiAVAiEF~GPL~vA~  113 (292)
T COG5006          84 MNLLFYLSIERIPLGIAVAIEFTGPLAVAL  113 (292)
T ss_pred             HHHHHHHHHHhccchhhhhhhhccHHHHHH
Confidence            678888999999999988888888865543

>TIGR02840 spore_YtaF putative sporulation protein YtaF

Probab=85.60  E-value=1.6  Score=36.74  Aligned_cols=47  Identities=21%  Similarity=0.423  Sum_probs=31.1

Q ss_pred             ChhhhhhhhhhHHHHHHHHHHHHhcCCcc-hhhHHHH-HHHHHHHhhhh
Q 026497          150 GPLYVSMFKPLAILFSTVMGVIIFGDGLF-LGSLVGA-VIIVIGFYVVM  196 (237)
Q Consensus       150 ~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~-~~~~iG~-~lIl~Gv~l~~  196 (237)
                      .+...+.+..+.|..+..+|..+-+--.. +.+++|+ +|+..|+.+..
T Consensus        32 ~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~   80 (206)
T TIGR02840        32 SNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIY   80 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence            34556677778889998888866543333 4566655 55557987654

This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.

>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]

Probab=84.91  E-value=1.8  Score=34.31  Aligned_cols=27  Identities=15%  Similarity=0.229  Sum_probs=20.2

Q ss_pred             HhccChhhhhhhhhhHHHHHHHHHHHH
Q 026497          146 LMRAGPLYVSMFKPLAILFSTVMGVII  172 (237)
Q Consensus       146 l~~~~a~~~s~~~~l~Pv~a~ll~~l~  172 (237)
                      +..-+.-+++.+.|+.|+++++++.++
T Consensus        69 i~EkslL~sA~LvYi~PL~~l~v~~~L   95 (150)
T COG3086          69 IEEKSLLKSALLVYIFPLVGLFLGAIL   95 (150)
T ss_pred             cCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556677888889999988887755

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.16  E-value=1.5  Score=39.40  Aligned_cols=76  Identities=17%  Similarity=0.123  Sum_probs=50.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhhH-HHHHHHHHHHHhcC--Ccchh----hHHHHHHHHHHHhhh
Q 026497          123 GLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLA-ILFSTVMGVIIFGD--GLFLG----SLVGAVIIVIGFYVV  195 (237)
Q Consensus       123 ~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l~-Pv~a~ll~~l~lgE--~l~~~----~~iG~~lIl~Gv~l~  195 (237)
                      .|..++.+ +.+...-..-.|++++...++.+++..+.. -.++++.|.+++.|  ..+..    .+.|+..|+.|+++.
T Consensus       226 ty~~~l~~-~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL  304 (335)
T KOG2922|consen  226 TWIFLLVV-ATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLL  304 (335)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEe
Confidence            34443333 224444455568999999999888777764 46667777888877  33333    456888899999886


Q ss_pred             hccc
Q 026497          196 MWGK  199 (237)
Q Consensus       196 ~~~~  199 (237)
                      ...|
T Consensus       305 ~~~k  308 (335)
T KOG2922|consen  305 HRTK  308 (335)
T ss_pred             eeec
Confidence            4443

>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC

Probab=82.00  E-value=2  Score=33.42  Aligned_cols=23  Identities=17%  Similarity=0.306  Sum_probs=17.7

Q ss_pred             ChhhhhhhhhhHHHHHHHHHHHH
Q 026497          150 GPLYVSMFKPLAILFSTVMGVII  172 (237)
Q Consensus       150 ~a~~~s~~~~l~Pv~a~ll~~l~  172 (237)
                      ...+++.+.|+.|+++++++.++
T Consensus        66 ~~~~aa~l~Y~lPll~li~g~~l   88 (135)
T PF04246_consen   66 SLLKAAFLVYLLPLLALIAGAVL   88 (135)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Confidence            34467788889999998888755

The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.

>PF15099 PIRT: Phosphoinositide-interacting protein family

Probab=81.76  E-value=0.58  Score=36.11  Aligned_cols=17  Identities=18%  Similarity=0.210  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 026497          125 FAIAYSAVIGAAFLTTL  141 (237)
Q Consensus       125 ~~llylgi~~t~la~~l  141 (237)
                      ..++..|+..|+++|.+
T Consensus        57 ~vili~GvvvT~vays~   73 (129)
T PF15099_consen   57 VVILIAGVVVTAVAYSF   73 (129)
T ss_pred             HHHHHHhhHhheeeEee
Confidence            45666788888888876

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=81.75  E-value=3.5  Score=36.61  Aligned_cols=64  Identities=13%  Similarity=0.177  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcc
Q 026497          135 AAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG  198 (237)
Q Consensus       135 t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~  198 (237)
                      -..+-.+.+.++....|+.--+.---.-+|.-+++.-+|+.+++..||+|+..+.+|+.++-..
T Consensus        96 Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~  159 (372)
T KOG3912|consen   96 DIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL  159 (372)
T ss_pred             HHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence            3444455555666666655555555577899999999999999999999999999999876543

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=80.88  E-value=1.8  Score=33.47  Aligned_cols=17  Identities=35%  Similarity=0.417  Sum_probs=0.0

Q ss_pred             CccccccccccCCCccccc
Q 026497          214 SELSSEKVPLLQNSTEDTK  232 (237)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~  232 (237)
                      +++.|.|.||  +|+|.|.
T Consensus       103 P~~~d~~~p~--~~~~~~~  119 (122)
T PF01102_consen  103 PEEDDTDVPL--SSVEIEN  119 (122)
T ss_dssp             -------------------
T ss_pred             CCCCCCCCCc--ceeeecC
Confidence            3333566665  4555443

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	237
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	99.34
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.96
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	85.71
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	80.95

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=99.34  E-value=2e-12  Score=100.92  Aligned_cols=70  Identities=17%  Similarity=0.189  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHHHHhccChhhhhhh-hhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhccc
Q 026497          130 SAVIGAAFLTTLLLWCLMRAGPLYVSMF-KPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK  199 (237)
Q Consensus       130 lgi~~t~la~~l~~~~l~~~~a~~~s~~-~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~  199 (237)
                      +++++++++|++|++++++.+++++..+ ..+.|++++++|++++||++++.+++|+++|+.|+++..+.+
T Consensus        35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4678899999999999999999999998 899999999999999999999999999999999999887654

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.96  E-value=3.1e-09  Score=79.70  Aligned_cols=69  Identities=17%  Similarity=0.191  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHHHHhccChhhhhhh-hhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcc
Q 026497          130 SAVIGAAFLTTLLLWCLMRAGPLYVSMF-KPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG  198 (237)
Q Consensus       130 lgi~~t~la~~l~~~~l~~~~a~~~s~~-~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~  198 (237)
                      .++++.+++|.+|.+++|+.+.+.+..+ ..+.|++++++|++++||++++.+++|.++|+.|+++....
T Consensus        35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            4667889999999999999999999888 79999999999999999999999999999999999987654

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=85.71  E-value=0.17  Score=36.97  Aligned_cols=28  Identities=11%  Similarity=0.209  Sum_probs=25.5

Q ss_pred             ccceeeccCCCcchhhHHHhHHhHHHHH
Q 026497            2 EKLKWRSKSSQAKSLGTIVSIAGAFVVT   29 (237)
Q Consensus         2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~   29 (237)
                      ..+++||+++..|++|+.+-++|++++.
T Consensus        75 ~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~  102 (110)
T 3b5d_A           75 SWGFFGQRLDLPAIIGMMLICAGVLIIN  102 (110)
T ss_pred             HHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            3578999999999999999999998876

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=80.95  E-value=0.35  Score=36.93  Aligned_cols=28  Identities=11%  Similarity=0.230  Sum_probs=19.7

Q ss_pred             cceeeccCCCcchhhHHHhHHhHHHHHH
Q 026497            3 KLKWRSKSSQAKSLGTIVSIAGAFVVTF   30 (237)
Q Consensus         3 ~~~lrer~s~~~~~Gi~la~~Gv~ll~~   30 (237)
                      .++++|+++..+++|+++-++|++++..
T Consensus        76 ~l~lgE~ls~~~~~Gi~LIi~GV~ll~~  103 (137)
T 2i68_A           76 WGFFGQRLDLPAIIGMMLICAGVLIINL  103 (137)
T ss_dssp             HHHHC------CHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	237
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	80.53

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=80.53  E-value=12  Score=29.72  Aligned_cols=27  Identities=11%  Similarity=-0.151  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccChhhh
Q 026497          128 AYSAVIGAAFLTTLLLWCLMRAGPLYV  154 (237)
Q Consensus       128 lylgi~~t~la~~l~~~~l~~~~a~~~  154 (237)
                      ...|+.........+....+..+....
T Consensus       351 ~~~g~~~~~~~~~~~~~~~~~~p~~~~  377 (447)
T d1pw4a_         351 IVIGFLIYGPVMLIGLHALELAPKKAA  377 (447)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHTSCTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence            334444444455556666666665543