Citrus Sinensis ID: 026506

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
Protein Sequence
MLPTDPTKKISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGKESCI
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEEEccccEEEEEEccccEEEccccEEEcccccccccccEEEcccccEEEEEcccHHHHHHHHccccccccHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHccccccEEEEEEEEEcccccccccccccEEEEccccccccHHHHHHHcccccEEEEEcccHHHHHHHHHHHHccccccEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccEEEEEcccccEEEEEEEcccEEEccccEEEcHHHccccccEEEEEccccEEEEEccccHHHHHccccccEEEEcHHHHHHHHHcccccccEEEEcccccHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHHcccccEEEEEccHHHccccccccccccEEEEccccHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHHcccccEccc
Coil and Loop (DISEMBL)
mlptdptkkisftrcikeGDLVIVYERHDCMKAVKVCQNSafqnrfgafkhsdwigkpfgsmvfsnkggfvyllaptpeLWTLVLSHRTQILYIADISFVIMYLELVPGclvlesgtgsgslTTSLARavaptghvytfdfHEQRAASAREdfertgvssFVTVGVrdiqgqgfpdefsgladsifldlpqpwlaipSAKKMlkqdgilcsfspciEQVQRSCESLrlnftgkesci
Flexible Loop (DISEMBL)
mlptdptkkisftrcikegDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESlrlnftgkesci
Low Complexity Region (SEG)
MLPTDPTKKISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVlesgtgsgslttslARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGKESCI
Disordered region (IsUnstruct)
*********ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLN********
Disordered Region (DISOPRED)
***************IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGKESCI
Disordered Region (DISEMBL)
MLPTDPTKKISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGKESCI
Disordered Region (DISPRO)
*******KK*SFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGKESCI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLPTDPTKKISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGKESCI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	237	2.2.26 [Sep-21-2011]
Q96FX7	289	tRNA (adenine(58)-N(1))-m	yes	no	0.907	0.743	0.515	5e-59
Q6AY46	290	tRNA (adenine(58)-N(1))-m	yes	no	0.907	0.741	0.511	9e-59
Q80XC2	290	tRNA (adenine(58)-N(1))-m	yes	no	0.907	0.741	0.511	1e-58
A6H791	285	tRNA (adenine(58)-N(1))-m	yes	no	0.907	0.754	0.515	3e-58
Q86JJ0	312	tRNA (adenine(58)-N(1))-m	yes	no	0.902	0.685	0.470	4e-49
P0CS08	433	tRNA (adenine(58)-N(1))-m	yes	no	0.881	0.482	0.449	3e-48
P0CS09	433	tRNA (adenine(58)-N(1))-m	N/A	no	0.881	0.482	0.449	3e-48
Q6CN53	407	tRNA (adenine(58)-N(1))-m	yes	no	0.894	0.520	0.412	1e-46
Q5A416	335	tRNA (adenine(58)-N(1))-m	N/A	no	0.911	0.644	0.439	1e-45
Q6BX32	369	tRNA (adenine(58)-N(1))-m	yes	no	0.907	0.582	0.396	4e-44

>sp|Q96FX7|TRM61_HUMAN tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A OS=Homo sapiens GN=TRMT61A PE=1 SV=1

 Score =  227 bits (579), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 113/219 (51%), Positives = 151/219 (68%), Gaps = 4/219 (1%)

Query: 10  ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKG 68
           +++   IKEGD  I+   H  M AV+V + +  Q R G  +HS D IG+PFGS V   +G
Sbjct: 4   VAYEELIKEGDTAILSLGHGAMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCGRG 63

Query: 69  GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLAR 128
           G+VY+L PTPELWTL L HRTQILY  DI+ + M LEL PG +V ESGTGSGS++ ++ R
Sbjct: 64  GWVYVLHPTPELWTLNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIR 123

Query: 129 AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
            +APTGH++T +FH+QRA  ARE+F+   V  +VTV  +D+   GF    S +AD++FLD
Sbjct: 124 TIAPTGHLHTVEFHQQRAEKAREEFQEHRVGRWVTVRTQDVCRSGF--GVSHVADAVFLD 181

Query: 189 LPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESL 226
           +P PW A+  A   LK + G  CSFSPCIEQVQR+C++L
Sbjct: 182 IPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQAL 220

Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 2EC: 0

>sp|Q6AY46|TRM61_RAT tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A OS=Rattus norvegicus GN=Trmt61a PE=2 SV=1

 Score =  226 bits (576), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 112/219 (51%), Positives = 154/219 (70%), Gaps = 4/219 (1%)

Query: 10  ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKG 68
           +++   IKEGD  I+   H  M AV+V + +  Q R G  +HS D IG+PFGS V  ++G
Sbjct: 4   VAYEELIKEGDTAILSLGHGSMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCSRG 63

Query: 69  GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLAR 128
           G+VY+L PTPELWT+ L HRTQILY  DI+ + M LEL PG +V ESGTGSGS++ ++ R
Sbjct: 64  GWVYVLHPTPELWTVNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIR 123

Query: 129 AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
           ++APTGH++T +FH+QRA  ARE+F++  VS +VTV  +D+   GF      +AD++FLD
Sbjct: 124 SIAPTGHLHTVEFHQQRADKAREEFQQHRVSQWVTVHTQDVCRSGF--GVVHVADAVFLD 181

Query: 189 LPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESL 226
           +P PW A+  A   LK + G  CSFSPCIEQVQR+C++L
Sbjct: 182 IPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQAL 220

Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 0

>sp|Q80XC2|TRM61_MOUSE tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A OS=Mus musculus GN=Trmt61a PE=2 SV=1

 Score =  226 bits (576), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 112/219 (51%), Positives = 153/219 (69%), Gaps = 4/219 (1%)

Query: 10  ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKG 68
           +++   IKEGD  I+   H  M AV+V + +  Q R G  +HS D IG+PFGS V  ++G
Sbjct: 4   VAYEELIKEGDTAILSLGHGSMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVICSRG 63

Query: 69  GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLAR 128
           G+VY+L PTPELWT+ L HRTQILY  DI+ + M LEL PG +V ESGTGSGS++ ++ R
Sbjct: 64  GWVYVLHPTPELWTVNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIR 123

Query: 129 AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
           +VAPTGH++T +FH+QRA  ARE+F+   +S +VTV  +D+   GF      +AD++FLD
Sbjct: 124 SVAPTGHLHTVEFHQQRADKAREEFQEHRLSQWVTVHTQDVCCSGF--GVVHVADAVFLD 181

Query: 189 LPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESL 226
           +P PW A+  A   LK + G  CSFSPCIEQVQR+C++L
Sbjct: 182 IPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQAL 220

Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 0

>sp|A6H791|TRM61_BOVIN tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A OS=Bos taurus GN=TRMT61A PE=2 SV=1

 Score =  224 bits (572), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 113/219 (51%), Positives = 151/219 (68%), Gaps = 4/219 (1%)

Query: 10  ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKG 68
           +++   IKEGD  I+   H  M AV+V + +  Q R G  +HS D IG+PFGS V   +G
Sbjct: 4   VAYEELIKEGDTAILSLGHGAMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCGRG 63

Query: 69  GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLAR 128
           G+VY+L PTPELWTL L HRTQILY  DI+ + M LEL PG +V ESGTGSGS++ ++ R
Sbjct: 64  GWVYVLHPTPELWTLNLPHRTQILYSTDIALLTMMLELRPGSVVCESGTGSGSVSHAIIR 123

Query: 129 AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
            +APTGH++T +FH+QRA  ARE+F+   V  +VTV  +D+   GF    S +AD++FLD
Sbjct: 124 TIAPTGHLHTVEFHQQRAERAREEFQEHRVGRWVTVLNQDVCRSGF--GVSHVADAVFLD 181

Query: 189 LPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESL 226
           +P PW A+  A   LK + G  CSFSPCIEQVQR+C++L
Sbjct: 182 IPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQAL 220

Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 0

>sp|Q86JJ0|TRM61_DICDI tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit trmt61a OS=Dictyostelium discoideum GN=trmt61a PE=1 SV=1

 Score =  194 bits (494), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 102/217 (47%), Positives = 149/217 (68%), Gaps = 3/217 (1%)

Query: 13  TRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKG-GFV 71
            + IKEGD V++Y   D M  + +  N+ + ++FG+++H + IGK +GS + S+ G GF 
Sbjct: 5   NKIIKEGDRVVMYNGKDNMAVLTMESNNVYNSKFGSYRHKNIIGKEYGSKLSSDNGNGFC 64

Query: 72  YLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVA 131
           +++A TPELW++ L HRTQIL+  DIS +I  LEL  G   +ESGTGSGSL++S+AR +A
Sbjct: 65  HVIAMTPELWSITLDHRTQILFNLDISTIIFNLELKNGSRAVESGTGSGSLSSSIARTIA 124

Query: 132 PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGF-PDEFSGLADSIFLDL 189
           P GH++TF+FHE+R   AR+DF+  G+  ++TV  RD  G +GF   + +   D++FLDL
Sbjct: 125 PKGHLFTFEFHEERVKFARKDFKDNGLDQYITVTHRDACGKEGFLRQDINNDIDAVFLDL 184

Query: 190 PQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226
           P PW AI +A  ++    +LCSFSPCIEQVQ +C  L
Sbjct: 185 PSPWDAIENAIAVMHDGSMLCSFSPCIEQVQNTCLKL 221

Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 0

>sp|P0CS08|TRM61_CRYNJ tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=TRM61 PE=3 SV=1

 Score =  191 bits (485), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 97/216 (44%), Positives = 143/216 (66%), Gaps = 7/216 (3%)

Query: 16  IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSN--KGGFVYL 73
           I+ GD+VI+Y   D M A+ +     F N++G + H   IG+ +GS + S     G+V++
Sbjct: 14  IEAGDIVILYMARDNMTAITITPGETFHNKYGRYPHDMLIGQKYGSKIHSPPPHPGYVHV 73

Query: 74  LAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPT 133
           L PTPELWTL L HRTQILY+ DIS++ M L +  G  V+E+GTGSGS+T SL+R+V P+
Sbjct: 74  LRPTPELWTLSLPHRTQILYLPDISYITMRLGVRVGGKVIEAGTGSGSMTHSLSRSVGPS 133

Query: 134 GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPW 193
           G V +F++H QR  +A ++FE  G+++ V +  R++  +GF D  +   + +FLDLP PW
Sbjct: 134 GQVMSFEYHRQRFETALKEFESHGLTN-VRLQHRNVCKEGFGD--AQGVEGVFLDLPAPW 190

Query: 194 LAIPSAKKMLKQDGI--LCSFSPCIEQVQRSCESLR 227
            AIP A K L++D I  +C FSPC+EQV ++   LR
Sbjct: 191 EAIPHAVKALRRDIITRICCFSPCLEQVLKTVTCLR 226

Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 0

>sp|P0CS09|TRM61_CRYNB tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=TRM61 PE=3 SV=1

 Score =  191 bits (485), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 97/216 (44%), Positives = 143/216 (66%), Gaps = 7/216 (3%)

Query: 16  IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSN--KGGFVYL 73
           I+ GD+VI+Y   D M A+ +     F N++G + H   IG+ +GS + S     G+V++
Sbjct: 14  IEAGDIVILYMARDNMTAITITPGETFHNKYGRYPHDMLIGQKYGSKIHSPPPHPGYVHV 73

Query: 74  LAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPT 133
           L PTPELWTL L HRTQILY+ DIS++ M L +  G  V+E+GTGSGS+T SL+R+V P+
Sbjct: 74  LRPTPELWTLSLPHRTQILYLPDISYITMRLGVRVGGKVIEAGTGSGSMTHSLSRSVGPS 133

Query: 134 GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPW 193
           G V +F++H QR  +A ++FE  G+++ V +  R++  +GF D  +   + +FLDLP PW
Sbjct: 134 GQVMSFEYHRQRFETALKEFESHGLTN-VRLQHRNVCKEGFGD--AQGVEGVFLDLPAPW 190

Query: 194 LAIPSAKKMLKQDGI--LCSFSPCIEQVQRSCESLR 227
            AIP A K L++D I  +C FSPC+EQV ++   LR
Sbjct: 191 EAIPHAVKALRRDIITRICCFSPCLEQVLKTVTCLR 226

Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 0

>sp|Q6CN53|TRM61_KLULA tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=TRM61 PE=3 SV=1

 Score =  186 bits (472), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 99/240 (41%), Positives = 143/240 (59%), Gaps = 28/240 (11%)

Query: 12  FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVF-----SN 66
           +   IKEGDLV+ +   D +K + V     F  R+GAF HSD IGKPFGS +      SN
Sbjct: 7   YKDTIKEGDLVLAWLSRDNLKPITVKAGEVFNTRYGAFSHSDMIGKPFGSQIAIRTKGSN 66

Query: 67  KGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSL 126
           + GF+++L PTPELW++ L HRTQI+Y  D S+++  +E  P   V+E+GTGSGS + + 
Sbjct: 67  RFGFIHVLQPTPELWSISLPHRTQIVYTPDSSYIMQRMECNPRSRVIEAGTGSGSFSHAF 126

Query: 127 ARAVAPTGHVYTFDFHEQRAASAREDFERTGV--SSFVTVGVRDIQGQGFP--------D 176
           AR+    GH+++++FHE R   A+++F+  G+  +   T+  RD+   GF          
Sbjct: 127 ARSA---GHLFSYEFHEVRYEQAKQEFKEHGLLEAGNTTITHRDVCKDGFEIKNGDTTSH 183

Query: 177 EFSG--------LADSIFLDLPQPWLAIPSAKKMLKQDGI--LCSFSPCIEQVQRSCESL 226
           EF G         AD IFLDLP PW AIP+   ++ ++    LC FSPCIEQV ++ E+L
Sbjct: 184 EFRGPEETKVELNADCIFLDLPAPWDAIPNLTSVISKEKKVNLCCFSPCIEQVDKTLEAL 243

Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 0

>sp|Q5A416|TRM61_CANAL tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=TRM61 PE=3 SV=1

 Score =  183 bits (464), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 98/223 (43%), Positives = 132/223 (59%), Gaps = 7/223 (3%)

Query: 12  FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKG-GF 70
           +   I+EGDLV+ Y     +K + V +   F  R+G F+H   IG  +G  +   KG GF
Sbjct: 6   YKNYIEEGDLVLAYISRSTIKPINVKKGEIFNTRYGHFEHDKMIGMKYGEQMPGAKGYGF 65

Query: 71  VYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAV 130
           ++LL PTPELWTL L HRTQI+Y  D S++I  L + PG  V+E+GTGS S T S AR V
Sbjct: 66  IHLLHPTPELWTLSLPHRTQIVYSPDSSYIIQRLNVKPGSRVIEAGTGSASFTHSFARTV 125

Query: 131 APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP-DEFSGLADSIFLDL 189
             +G V+T++FHE R   A+++ E   + +  T+  RD+   GF  D  S   D +FLDL
Sbjct: 126 TLSGKVFTYEFHEPRYLEAKKELEEHKLDN-TTITHRDVCNDGFSIDNESIEGDVVFLDL 184

Query: 190 PQPWLAIPSAKKML---KQDGILCSFSPCIEQVQRSCESLRLN 229
           P PW AIP    ++   K  GI C FSPCIEQV R+  +L  N
Sbjct: 185 PSPWDAIPHLDSVISTSKAAGICC-FSPCIEQVDRTVRALEEN 226

Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 0

>sp|Q6BX32|TRM61_DEBHA tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=TRM61 PE=3 SV=2

 Score =  177 bits (450), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 90/227 (39%), Positives = 136/227 (59%), Gaps = 12/227 (5%)

Query: 12  FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKG-GF 70
           +   I+EGDLV+ +     +K + V + S    R+G F+H   IG  +G  +   KG GF
Sbjct: 6   YKDIIEEGDLVLAFLGRSNIKPITVTKGSQLNTRYGNFEHDRMIGMKYGEQMPGAKGVGF 65

Query: 71  VYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAV 130
           ++LL PTPELWT+ L HRTQI+Y  D S++I  L +  G  V+E+GTGSGS + S AR +
Sbjct: 66  IHLLYPTPELWTVSLPHRTQIVYTPDSSYIIQRLNVTSGTRVIEAGTGSGSFSHSFARTI 125

Query: 131 APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF-----PDEF---SGL- 181
              G ++T++FHE R   A+++ E  G+ +   +  RD+   GF     P++F    G+ 
Sbjct: 126 GVEGRLFTYEFHEPRYIEAKKELEDHGLLANTVITHRDVCNDGFEISNIPEDFKKDDGIC 185

Query: 182 ADSIFLDLPQPWLAIPSAKKMLKQDGI--LCSFSPCIEQVQRSCESL 226
            D +FLDLP PW AIP+ K ++       +C FSPCIEQV+++ ++L
Sbjct: 186 GDVVFLDLPSPWTAIPNLKSVISHQSRVGICCFSPCIEQVEKTVKAL 232

Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
255560858	311	tRNA, putative [Ricinus communis] gi|223	0.974	0.742	0.878	1e-120
225452408	324	PREDICTED: tRNA (adenine-N(1)-)-methyltr	0.974	0.712	0.865	1e-116
449435564	310	PREDICTED: tRNA (adenine(58)-N(1))-methy	0.974	0.745	0.861	1e-116
297807479	375	hypothetical protein ARALYDRAFT_325929 [	1.0	0.632	0.797	1e-112
7573309	370	putative protein [Arabidopsis thaliana]	0.970	0.621	0.808	1e-111
18417421	318	tRNA (adenine-N1-)-methyltransferase [Ar	0.970	0.723	0.808	1e-111
224142479	311	predicted protein [Populus trichocarpa]	0.970	0.739	0.834	1e-110
255636142	257	unknown [Glycine max]	0.974	0.898	0.813	1e-110
356549282	309	PREDICTED: tRNA (adenine-N(1)-)-methyltr	0.974	0.747	0.809	1e-108
357446751	237	tRNA (adenine-N(1)-)-methyltransferase c	0.978	0.978	0.775	1e-104

>gi|255560858|ref|XP_002521442.1| tRNA, putative [Ricinus communis] gi|223539341|gb|EEF40932.1| tRNA, putative [Ricinus communis]

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 203/231 (87%), Positives = 218/231 (94%)

Query: 1   MLPTDPTKKISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFG 60
           ML TDPT+++SFTRCI +GDLVIVYE+HD MKA+KVC+ S  QNRFG FKHSDWIGKPFG
Sbjct: 1   MLHTDPTRRLSFTRCITDGDLVIVYEKHDTMKAIKVCETSVLQNRFGVFKHSDWIGKPFG 60

Query: 61  SMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSG 120
           S VFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISF+I YLE+VPGCLVLESGTGSG
Sbjct: 61  SKVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFLITYLEIVPGCLVLESGTGSG 120

Query: 121 SLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180
           SLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE+TGVSS VTVGVRDIQG+GFPDE+SG
Sbjct: 121 SLTTSLARAVAPTGHVYTFDFHEQRAASAREDFEKTGVSSLVTVGVRDIQGEGFPDEYSG 180

Query: 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFT 231
           L DS+FLDLPQPWLAIPSA KMLKQDG+LCSFSPCIEQVQRSCE+LR NFT
Sbjct: 181 LVDSVFLDLPQPWLAIPSAAKMLKQDGVLCSFSPCIEQVQRSCETLRSNFT 231

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452408|ref|XP_002273877.1| PREDICTED: tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A [Vitis vinifera]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/231 (86%), Positives = 212/231 (91%)

Query: 1   MLPTDPTKKISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFG 60
           MLP D  K+ISF RCI +GDLVIVYERHD MKAVKVC+ S  QNRFG FKHSDWIGKPFG
Sbjct: 1   MLPIDAEKRISFKRCISDGDLVIVYERHDNMKAVKVCEGSTLQNRFGVFKHSDWIGKPFG 60

Query: 61  SMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSG 120
           S V SNKGGFVYLLAPTPELWTLVLSHRTQILYIADIS VIMYLE++PGCLVLESGTGSG
Sbjct: 61  SKVLSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISLVIMYLEIIPGCLVLESGTGSG 120

Query: 121 SLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180
           SLTTSLARAVAP GHVYTFDFHEQRAASAREDFE+ G+SSFVTVGVRDIQG+GFPDEFSG
Sbjct: 121 SLTTSLARAVAPNGHVYTFDFHEQRAASAREDFEKIGLSSFVTVGVRDIQGEGFPDEFSG 180

Query: 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFT 231
           LADS+FLDLPQPWLAIPSA KMLK+DG+LCSFSPCIEQVQRS E+L  NFT
Sbjct: 181 LADSVFLDLPQPWLAIPSAGKMLKEDGVLCSFSPCIEQVQRSSETLTSNFT 231

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435564|ref|XP_004135565.1| PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A-like [Cucumis sativus] gi|449528672|ref|XP_004171327.1| PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A-like [Cucumis sativus]

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/231 (86%), Positives = 213/231 (92%)

Query: 1   MLPTDPTKKISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFG 60
           MLPTD  K ISFTR I++GDLVIVYERHD MKAVKVC  S  QNRFG FKHSDWIGKPFG
Sbjct: 1   MLPTDELKSISFTRSIRDGDLVIVYERHDIMKAVKVCDGSTLQNRFGVFKHSDWIGKPFG 60

Query: 61  SMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSG 120
           S   SNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIM+LE+VPGCLVLESGTGSG
Sbjct: 61  SKALSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMFLEIVPGCLVLESGTGSG 120

Query: 121 SLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180
           SLTTSLARAVAPTGHVYTFDFHEQRA+SAREDFE+TG++S VTVGVRDIQGQGFP+EF G
Sbjct: 121 SLTTSLARAVAPTGHVYTFDFHEQRASSAREDFEKTGLTSLVTVGVRDIQGQGFPEEFVG 180

Query: 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFT 231
           LADS+FLDLPQPWLAIPSA++MLKQDG+LCSFSPCIEQVQRS E+LR  FT
Sbjct: 181 LADSVFLDLPQPWLAIPSAERMLKQDGMLCSFSPCIEQVQRSVETLRSKFT 231

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807479|ref|XP_002871623.1| hypothetical protein ARALYDRAFT_325929 [Arabidopsis lyrata subsp. lyrata] gi|297317460|gb|EFH47882.1| hypothetical protein ARALYDRAFT_325929 [Arabidopsis lyrata subsp. lyrata]

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 189/237 (79%), Positives = 213/237 (89%)

Query: 1   MLPTDPTKKISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFG 60
           MLPT+  K +SF R I++GDLVIVYERHD MK VKV +++  QNRFG +KHSDWIGKP G
Sbjct: 1   MLPTESKKALSFKRYIEDGDLVIVYERHDVMKPVKVSKDAVLQNRFGVYKHSDWIGKPLG 60

Query: 61  SMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSG 120
           + VFSNKG FVYLLAPTPELWTLVLSHRTQILYIADISFV+MYLE+VPGC+VLESGTGSG
Sbjct: 61  TKVFSNKGKFVYLLAPTPELWTLVLSHRTQILYIADISFVVMYLEVVPGCVVLESGTGSG 120

Query: 121 SLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180
           SL+TSLARAVAPTGHVY+FDFHEQRA SAREDFE+TG+SS VTV VRDIQG+GFP++ SG
Sbjct: 121 SLSTSLARAVAPTGHVYSFDFHEQRAVSAREDFEKTGISSLVTVEVRDIQGEGFPEKLSG 180

Query: 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGKESCI 237
           LADS+FLDLPQPWLA+PSA KMLKQDG+LCSFSPCIEQVQR+CE LR +F GK S I
Sbjct: 181 LADSVFLDLPQPWLAVPSAAKMLKQDGVLCSFSPCIEQVQRTCEVLRSDFIGKFSEI 237

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7573309|emb|CAB87627.1| putative protein [Arabidopsis thaliana]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 186/230 (80%), Positives = 208/230 (90%)

Query: 1   MLPTDPTKKISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFG 60
           MLPT+  K  SF RCI++GDLVIVYERHD MK VKV ++   QNRFG +KHSDWIGKP G
Sbjct: 1   MLPTESKKAFSFKRCIEDGDLVIVYERHDVMKPVKVSKDGVLQNRFGVYKHSDWIGKPLG 60

Query: 61  SMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSG 120
           + VFSNKG FVYLLAPTPELWTLVLSHRTQILYIADISFV+MYLE+VPGC+VLESGTGSG
Sbjct: 61  TKVFSNKGKFVYLLAPTPELWTLVLSHRTQILYIADISFVVMYLEVVPGCVVLESGTGSG 120

Query: 121 SLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180
           SL+TSLARAVAPTGHVY+FDFHEQRA SAREDFE+TG+SS VTV VRDIQG+GFP++ SG
Sbjct: 121 SLSTSLARAVAPTGHVYSFDFHEQRAVSAREDFEKTGISSLVTVEVRDIQGEGFPEKLSG 180

Query: 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNF 230
           LADS+FLDLPQPWLA+PSA KMLKQDG+LCSFSPCIEQVQR+CE LR +F
Sbjct: 181 LADSVFLDLPQPWLAVPSAAKMLKQDGVLCSFSPCIEQVQRTCEVLRSDF 230

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18417421|ref|NP_568302.1| tRNA (adenine-N1-)-methyltransferase [Arabidopsis thaliana] gi|28393527|gb|AAO42184.1| unknown protein [Arabidopsis thaliana] gi|28827644|gb|AAO50666.1| unknown protein [Arabidopsis thaliana] gi|332004669|gb|AED92052.1| tRNA (adenine-N1-)-methyltransferase [Arabidopsis thaliana]

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 186/230 (80%), Positives = 208/230 (90%)

Query: 1   MLPTDPTKKISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFG 60
           MLPT+  K  SF RCI++GDLVIVYERHD MK VKV ++   QNRFG +KHSDWIGKP G
Sbjct: 1   MLPTESKKAFSFKRCIEDGDLVIVYERHDVMKPVKVSKDGVLQNRFGVYKHSDWIGKPLG 60

Query: 61  SMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSG 120
           + VFSNKG FVYLLAPTPELWTLVLSHRTQILYIADISFV+MYLE+VPGC+VLESGTGSG
Sbjct: 61  TKVFSNKGKFVYLLAPTPELWTLVLSHRTQILYIADISFVVMYLEVVPGCVVLESGTGSG 120

Query: 121 SLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180
           SL+TSLARAVAPTGHVY+FDFHEQRA SAREDFE+TG+SS VTV VRDIQG+GFP++ SG
Sbjct: 121 SLSTSLARAVAPTGHVYSFDFHEQRAVSAREDFEKTGISSLVTVEVRDIQGEGFPEKLSG 180

Query: 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNF 230
           LADS+FLDLPQPWLA+PSA KMLKQDG+LCSFSPCIEQVQR+CE LR +F
Sbjct: 181 LADSVFLDLPQPWLAVPSAAKMLKQDGVLCSFSPCIEQVQRTCEVLRSDF 230

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142479|ref|XP_002324584.1| predicted protein [Populus trichocarpa] gi|222866018|gb|EEF03149.1| predicted protein [Populus trichocarpa]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 192/230 (83%), Positives = 207/230 (90%)

Query: 1   MLPTDPTKKISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFG 60
           ML +D  KK+SF R IK+GDLVIVYE+ D MKAVKVC+ S  QNRFG FKHSDWIGKPFG
Sbjct: 1   MLCSDGEKKLSFCRSIKDGDLVIVYEKRDVMKAVKVCETSVLQNRFGVFKHSDWIGKPFG 60

Query: 61  SMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSG 120
           S V SNKGGFVYLLAPTPELWTLVLSHRTQILYIADISF+I YLE+VPG LVLESGTGSG
Sbjct: 61  SKVLSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFLITYLEIVPGSLVLESGTGSG 120

Query: 121 SLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180
           SLTTSLARAVAPTGHVYTFDFH+QRAASAREDF+ TGV S VTVG RDIQG+GFPDE+SG
Sbjct: 121 SLTTSLARAVAPTGHVYTFDFHQQRAASAREDFQSTGVGSLVTVGARDIQGEGFPDEYSG 180

Query: 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNF 230
           LADS+FLDLPQPWLAI SA KMLKQDG LCSFSPCIEQVQR+CE+L+ NF
Sbjct: 181 LADSVFLDLPQPWLAILSAGKMLKQDGTLCSFSPCIEQVQRTCEALKSNF 230

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255636142|gb|ACU18414.1| unknown [Glycine max]

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/231 (81%), Positives = 206/231 (89%)

Query: 1   MLPTDPTKKISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFG 60
           ML   P KK+SF R I  GDLVIVYERHD MKAV VC+ S  QNRFG FKHSDWIGKPFG
Sbjct: 1   MLSLHPAKKLSFNRSISNGDLVIVYERHDIMKAVTVCEGSVLQNRFGVFKHSDWIGKPFG 60

Query: 61  SMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSG 120
           S VFS KGGFVYLLAPTPELWTLVL+HRTQILYIADISFVIMYLE+VPGC+VLESGTGSG
Sbjct: 61  SKVFSCKGGFVYLLAPTPELWTLVLNHRTQILYIADISFVIMYLEIVPGCVVLESGTGSG 120

Query: 121 SLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180
           SLT+SLARAVAP+GHVYTFDFHEQRAASAR DFERTG+SS VTV VRDIQG+GFPD+ +G
Sbjct: 121 SLTSSLARAVAPSGHVYTFDFHEQRAASARADFERTGLSSLVTVQVRDIQGEGFPDDLTG 180

Query: 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFT 231
           +ADS+FLDLPQPWLAIP+A K+L+ DG LCSFSPCIEQVQR+CE+LR  FT
Sbjct: 181 MADSVFLDLPQPWLAIPAAAKVLRHDGTLCSFSPCIEQVQRTCETLRTRFT 231

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549282|ref|XP_003543023.1| PREDICTED: tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A-like [Glycine max]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 187/231 (80%), Positives = 204/231 (88%)

Query: 1   MLPTDPTKKISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFG 60
           ML   P KK+SF R I  GDLVIVYERHD MKAV V + S  QNRFG FKHS+WIGKPFG
Sbjct: 1   MLALHPAKKLSFNRPINNGDLVIVYERHDIMKAVTVSEGSVLQNRFGVFKHSEWIGKPFG 60

Query: 61  SMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSG 120
           S V S+KGGFVYLLAPTPELWTLVL+HRTQILYIADISFVIMYLE+VPGC+VLESGTGSG
Sbjct: 61  SKVVSSKGGFVYLLAPTPELWTLVLNHRTQILYIADISFVIMYLEIVPGCVVLESGTGSG 120

Query: 121 SLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180
           SLTTSLARAVAP+GHVYTFDFHEQRAASAR DFERTG+SS VTV VRDIQG+GFPD F+G
Sbjct: 121 SLTTSLARAVAPSGHVYTFDFHEQRAASARADFERTGLSSLVTVQVRDIQGEGFPDTFTG 180

Query: 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFT 231
           +ADS+FLDLPQPWL IPSA K+L+ DG LCSFSPCIEQVQR+CE+LR  FT
Sbjct: 181 MADSVFLDLPQPWLVIPSAAKVLRHDGTLCSFSPCIEQVQRTCETLRTCFT 231

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446751|ref|XP_003593651.1| tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A [Medicago truncatula] gi|355482699|gb|AES63902.1| tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A [Medicago truncatula]

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/232 (77%), Positives = 202/232 (87%)

Query: 1   MLPTDPTKKISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFG 60
           +L ++P K I+F R I +G+LVIVY +H  MKAV V + S FQN  GAFKHSDWIGKPFG
Sbjct: 2   LLTSNPEKTIAFNRKIHDGNLVIVYVKHGNMKAVTVSEGSVFQNSLGAFKHSDWIGKPFG 61

Query: 61  SMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSG 120
           S VF+NKG FVYLLAPTPELWTLVL+HRTQILYI DISFVIMYLE+V GCLVLESGTGSG
Sbjct: 62  SKVFNNKGDFVYLLAPTPELWTLVLNHRTQILYIPDISFVIMYLEIVAGCLVLESGTGSG 121

Query: 121 SLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180
           SLTTSLARA+AP GHVYTFDFHEQRAASAR+DFER G+SS ++ GVRDIQG+GFPDE + 
Sbjct: 122 SLTTSLARAIAPNGHVYTFDFHEQRAASARDDFERIGLSSLISCGVRDIQGEGFPDELNE 181

Query: 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTG 232
           LADS+FLDLPQPWLAIPSA KMLKQDG  CSFSPCIEQVQRSC++L+  FTG
Sbjct: 182 LADSVFLDLPQPWLAIPSAAKMLKQDGTFCSFSPCIEQVQRSCDALQSCFTG 233

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
TAIR|locus:2222682	318	AT5G14600 [Arabidopsis thalian	0.970	0.723	0.752	3.8e-94
ZFIN|ZDB-GENE-040718-5	315	trmt61a "tRNA methyltransferas	0.945	0.711	0.480	3.5e-52
UNIPROTKB|F1NZ19	314	TRMT61A "Uncharacterized prote	0.928	0.700	0.484	5.1e-51
UNIPROTKB|Q96FX7	289	TRMT61A "tRNA (adenine(58)-N(1	0.907	0.743	0.479	1.5e-49
RGD|1359191	290	Trmt61a "tRNA methyltransferas	0.928	0.758	0.471	2.5e-49
MGI|MGI:2443487	290	Trmt61a "tRNA methyltransferas	0.928	0.758	0.471	4.1e-49
UNIPROTKB|A6H791	285	TRMT61A "tRNA (adenine(58)-N(1	0.907	0.754	0.479	1.1e-48
UNIPROTKB|F1MDU6	285	TRMT61A "tRNA (adenine(58)-N(1	0.907	0.754	0.479	1.8e-48
UNIPROTKB|J9NY29	289	TRMT61A "Uncharacterized prote	0.907	0.743	0.470	2.3e-48
DICTYBASE|DDB_G0271512	312	trmt61 "tRNA(m1A58)-methyltran	0.898	0.682	0.425	9.1e-45

TAIR|locus:2222682 AT5G14600 [Arabidopsis thaliana (taxid:3702)]

 Score = 937 (334.9 bits), Expect = 3.8e-94, P = 3.8e-94
 Identities = 173/230 (75%), Positives = 194/230 (84%)

Query:     1 MLPTDPTKKISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFG 60
             MLPT+  K  SF RCI++GDLVIVYERHD MK VKV ++   QNRFG +KHSDWIGKP G
Sbjct:     1 MLPTESKKAFSFKRCIEDGDLVIVYERHDVMKPVKVSKDGVLQNRFGVYKHSDWIGKPLG 60

Query:    61 SMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXX 120
             + VFSNKG FVYLLAPTPELWTLVLSHRTQILYIADISFV+MYLE+VPGC+V        
Sbjct:    61 TKVFSNKGKFVYLLAPTPELWTLVLSHRTQILYIADISFVVMYLEVVPGCVVLESGTGSG 120

Query:   121 XXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180
                   ARAVAPTGHVY+FDFHEQRA SAREDFE+TG+SS VTV VRDIQG+GFP++ SG
Sbjct:   121 SLSTSLARAVAPTGHVYSFDFHEQRAVSAREDFEKTGISSLVTVEVRDIQGEGFPEKLSG 180

Query:   181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNF 230
             LADS+FLDLPQPWLA+PSA KMLKQDG+LCSFSPCIEQVQR+CE LR +F
Sbjct:   181 LADSVFLDLPQPWLAVPSAAKMLKQDGVLCSFSPCIEQVQRTCEVLRSDF 230

GO:0005634 "nucleus" evidence=ISM

GO:0016429 "tRNA (adenine-N1-)-methyltransferase activity" evidence=IEA

GO:0030488 "tRNA methylation" evidence=IEA

ZFIN|ZDB-GENE-040718-5 trmt61a "tRNA methyltransferase 61 homolog A (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 110/229 (48%), Positives = 149/229 (65%)

Query:    10 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKG 68
             + ++  I+EGD+VI++  HD M  +KV   +  Q R+G  +HS D IG+ FGS V  +KG
Sbjct:     4 VEYSELIQEGDVVIIFMGHDSMMPIKVQSGAQTQTRYGVIRHSSDLIGQRFGSKVTCSKG 63

Query:    69 GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXAR 128
             G+VY+L PTPELWT+ L HRTQILY  DI+ + + LEL PG +V               R
Sbjct:    64 GWVYVLHPTPELWTINLPHRTQILYTTDIANITLMLELKPGSVVCESGTGSGSLSHSILR 123

Query:   129 AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
              +APTGH++T +FH QRA  A ++F+   VS  VTV  +D+   GF    +G+AD++FLD
Sbjct:   124 TIAPTGHLHTVEFHSQRAEKAMQEFKEHKVSHLVTVRNQDVCKDGFG--ITGVADAVFLD 181

Query:   189 LPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESLRLNFTGKESC 236
             +P PW AI  AKK LK + G LCSFSPCIEQVQR+CE+L L+   +E C
Sbjct:   182 IPSPWEAISHAKKALKYKGGRLCSFSPCIEQVQRTCEAL-LDHGFEEIC 229

GO:0030488 "tRNA methylation" evidence=IEA

GO:0031515 "tRNA (m1A) methyltransferase complex" evidence=IEA

GO:0016429 "tRNA (adenine-N1-)-methyltransferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|F1NZ19 TRMT61A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 109/225 (48%), Positives = 141/225 (62%)

Query:    10 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKG 68
             + +   IK+GD  IV+  H+ M  VKV      Q ++G  +HS D IGK +GS V  +KG
Sbjct:    10 VEYGDTIKDGDTAIVFLGHESMFPVKVQHGGVTQTKYGVIRHSTDLIGKKYGSKVTCSKG 69

Query:    69 GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXAR 128
             G+V++L PTPELWT+ L HRTQILY  DIS + M LEL PG +V               R
Sbjct:    70 GWVFILHPTPELWTVNLPHRTQILYSTDISVITMMLELKPGSIVCESGTGSGSLSHALIR 129

Query:   129 AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
              VAPTGH+YT +FH+QRA  A+E+F   GV   VTV  +D+   GF    SG+AD++FLD
Sbjct:   130 TVAPTGHLYTVEFHQQRAEKAKEEFREHGVEHLVTVTNQDVCKNGFG--VSGIADAVFLD 187

Query:   189 LPQPWLAIPSAKKMLKQDG-ILCSFSPCIEQVQRSCESLR-LNFT 231
             +P PW AI  AK  LK +G  +CSFSPCIEQVQR+C ++    FT
Sbjct:   188 IPSPWEAIGHAKSALKAEGGRICSFSPCIEQVQRTCLAMEEYGFT 232

GO:0016429 "tRNA (adenine-N1-)-methyltransferase activity" evidence=IEA

GO:0031515 "tRNA (m1A) methyltransferase complex" evidence=IEA

UNIPROTKB|Q96FX7 TRMT61A "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A" [Homo sapiens (taxid:9606)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 105/219 (47%), Positives = 139/219 (63%)

Query:    10 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKG 68
             +++   IKEGD  I+   H  M AV+V + +  Q R G  +HS D IG+PFGS V   +G
Sbjct:     4 VAYEELIKEGDTAILSLGHGAMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCGRG 63

Query:    69 GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXAR 128
             G+VY+L PTPELWTL L HRTQILY  DI+ + M LEL PG +V               R
Sbjct:    64 GWVYVLHPTPELWTLNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIR 123

Query:   129 AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
              +APTGH++T +FH+QRA  ARE+F+   V  +VTV  +D+   GF    S +AD++FLD
Sbjct:   124 TIAPTGHLHTVEFHQQRAEKAREEFQEHRVGRWVTVRTQDVCRSGFG--VSHVADAVFLD 181

Query:   189 LPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESL 226
             +P PW A+  A   LK + G  CSFSPCIEQVQR+C++L
Sbjct:   182 IPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQAL 220

GO:0016429 "tRNA (adenine-N1-)-methyltransferase activity" evidence=IEA

GO:0031515 "tRNA (m1A) methyltransferase complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

RGD|1359191 Trmt61a "tRNA methyltransferase 61 homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 106/225 (47%), Positives = 145/225 (64%)

Query:    10 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKG 68
             +++   IKEGD  I+   H  M AV+V + +  Q R G  +HS D IG+PFGS V  ++G
Sbjct:     4 VAYEELIKEGDTAILSLGHGSMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCSRG 63

Query:    69 GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXAR 128
             G+VY+L PTPELWT+ L HRTQILY  DI+ + M LEL PG +V               R
Sbjct:    64 GWVYVLHPTPELWTVNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIR 123

Query:   129 AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
             ++APTGH++T +FH+QRA  ARE+F++  VS +VTV  +D+   GF      +AD++FLD
Sbjct:   124 SIAPTGHLHTVEFHQQRADKAREEFQQHRVSQWVTVHTQDVCRSGFG--VVHVADAVFLD 181

Query:   189 LPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESLRLN-FT 231
             +P PW A+  A   LK + G  CSFSPCIEQVQR+C++L  + FT
Sbjct:   182 IPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQALAAHGFT 226

GO:0005634 "nucleus" evidence=IEA

GO:0016429 "tRNA (adenine-N1-)-methyltransferase activity" evidence=IEA

GO:0031515 "tRNA (m1A) methyltransferase complex" evidence=IEA

MGI|MGI:2443487 Trmt61a "tRNA methyltransferase 61A" [Mus musculus (taxid:10090)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 106/225 (47%), Positives = 144/225 (64%)

Query:    10 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKG 68
             +++   IKEGD  I+   H  M AV+V + +  Q R G  +HS D IG+PFGS V  ++G
Sbjct:     4 VAYEELIKEGDTAILSLGHGSMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVICSRG 63

Query:    69 GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXAR 128
             G+VY+L PTPELWT+ L HRTQILY  DI+ + M LEL PG +V               R
Sbjct:    64 GWVYVLHPTPELWTVNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIR 123

Query:   129 AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
             +VAPTGH++T +FH+QRA  ARE+F+   +S +VTV  +D+   GF      +AD++FLD
Sbjct:   124 SVAPTGHLHTVEFHQQRADKAREEFQEHRLSQWVTVHTQDVCCSGFG--VVHVADAVFLD 181

Query:   189 LPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESLRLN-FT 231
             +P PW A+  A   LK + G  CSFSPCIEQVQR+C++L  + FT
Sbjct:   182 IPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQALAAHGFT 226

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016429 "tRNA (adenine-N1-)-methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0030488 "tRNA methylation" evidence=IEA

GO:0031515 "tRNA (m1A) methyltransferase complex" evidence=IEA

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|A6H791 TRMT61A "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A" [Bos taurus (taxid:9913)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 105/219 (47%), Positives = 139/219 (63%)

Query:    10 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKG 68
             +++   IKEGD  I+   H  M AV+V + +  Q R G  +HS D IG+PFGS V   +G
Sbjct:     4 VAYEELIKEGDTAILSLGHGAMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCGRG 63

Query:    69 GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXAR 128
             G+VY+L PTPELWTL L HRTQILY  DI+ + M LEL PG +V               R
Sbjct:    64 GWVYVLHPTPELWTLNLPHRTQILYSTDIALLTMMLELRPGSVVCESGTGSGSVSHAIIR 123

Query:   129 AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
              +APTGH++T +FH+QRA  ARE+F+   V  +VTV  +D+   GF    S +AD++FLD
Sbjct:   124 TIAPTGHLHTVEFHQQRAERAREEFQEHRVGRWVTVLNQDVCRSGFG--VSHVADAVFLD 181

Query:   189 LPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESL 226
             +P PW A+  A   LK + G  CSFSPCIEQVQR+C++L
Sbjct:   182 IPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQAL 220

GO:0005634 "nucleus" evidence=IEA

GO:0031515 "tRNA (m1A) methyltransferase complex" evidence=IEA

GO:0016429 "tRNA (adenine-N1-)-methyltransferase activity" evidence=IEA

UNIPROTKB|F1MDU6 TRMT61A "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A" [Bos taurus (taxid:9913)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 105/219 (47%), Positives = 138/219 (63%)

Query:    10 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKG 68
             +++   IKEGD  I+   H  M AV+V   +  Q R G  +HS D IG+PFGS V   +G
Sbjct:     4 VAYEELIKEGDTAILSLGHGAMVAVRVQPGAQTQTRHGVLRHSVDLIGRPFGSKVTCGRG 63

Query:    69 GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXAR 128
             G+VY+L PTPELWTL L HRTQILY  DI+ + M LEL PG +V               R
Sbjct:    64 GWVYVLHPTPELWTLNLPHRTQILYSTDIALLTMMLELRPGSVVCESGTGSGSVSHAIIR 123

Query:   129 AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
              +APTGH++T +FH+QRA  ARE+F+   V  +VTV  +D+   GF    S +AD++FLD
Sbjct:   124 TIAPTGHLHTVEFHQQRAERAREEFQEHRVGRWVTVLNQDVCRSGFG--VSHVADAVFLD 181

Query:   189 LPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESL 226
             +P PW A+  A   LK + G  CSFSPCIEQVQR+C++L
Sbjct:   182 IPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQAL 220

GO:0031515 "tRNA (m1A) methyltransferase complex" evidence=IEA

GO:0016429 "tRNA (adenine-N1-)-methyltransferase activity" evidence=IEA

UNIPROTKB|J9NY29 TRMT61A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 103/219 (47%), Positives = 139/219 (63%)

Query:    10 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKG 68
             +++   I+EGD  I+   H  M A++V + +  Q R G  +HS D IG+PFGS V   +G
Sbjct:     4 VAYEELIQEGDTAILSLGHGAMVALRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCGRG 63

Query:    69 GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXAR 128
             G+VY+L PTPELWTL L HRTQILY  DI+ + M LEL PG +V               R
Sbjct:    64 GWVYVLHPTPELWTLNLPHRTQILYSTDIALLTMMLELRPGSVVCASGTGSGSVSHAIIR 123

Query:   129 AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
              +APTGH++T +FH+QRA  ARE+F+   V  +VTV  +D+   GF    S +AD++FLD
Sbjct:   124 TIAPTGHLHTVEFHQQRAEKAREEFQEHRVGRWVTVRNQDVCRSGFG--VSHVADAVFLD 181

Query:   189 LPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESL 226
             +P PW A+  A   LK + G  CSFSPCIEQVQR+C++L
Sbjct:   182 IPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQAL 220

GO:0031515 "tRNA (m1A) methyltransferase complex" evidence=IEA

GO:0016429 "tRNA (adenine-N1-)-methyltransferase activity" evidence=IEA

DICTYBASE|DDB_G0271512 trmt61 "tRNA(m1A58)-methyltransferase subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 92/216 (42%), Positives = 135/216 (62%)

Query:    14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKG-GFVY 72
             + IKEGD V++Y   D M  + +  N+ + ++FG+++H + IGK +GS + S+ G GF +
Sbjct:     6 KIIKEGDRVVMYNGKDNMAVLTMESNNVYNSKFGSYRHKNIIGKEYGSKLSSDNGNGFCH 65

Query:    73 LLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAP 132
             ++A TPELW++ L HRTQIL+  DIS +I  LEL  G                 AR +AP
Sbjct:    66 VIAMTPELWSITLDHRTQILFNLDISTIIFNLELKNGSRAVESGTGSGSLSSSIARTIAP 125

Query:   133 TGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGF-PDEFSGLADSIFLDLP 190
              GH++TF+FHE+R   AR+DF+  G+  ++TV  RD  G +GF   + +   D++FLDLP
Sbjct:   126 KGHLFTFEFHEERVKFARKDFKDNGLDQYITVTHRDACGKEGFLRQDINNDIDAVFLDLP 185

Query:   191 QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226
              PW AI +A  ++    +LCSFSPCIEQVQ +C  L
Sbjct:   186 SPWDAIENAIAVMHDGSMLCSFSPCIEQVQNTCLKL 221

GO:0031515 "tRNA (m1A) methyltransferase complex" evidence=IEA;ISS

GO:0030488 "tRNA methylation" evidence=IEA;ISS

GO:0016429 "tRNA (adenine-N1-)-methyltransferase activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96FX7	TRM61_HUMAN	2, ., 1, ., 1, ., 2, 2, 0	0.5159	0.9071	0.7439	yes	no
Q9V1J7	TRMI_PYRAB	2, ., 1, ., 1, ., 2, 1, 9	0.3207	0.8734	0.8181	yes	no
Q80XC2	TRM61_MOUSE	2, ., 1, ., 1, ., 2, 2, 0	0.5114	0.9071	0.7413	yes	no
Q6AY46	TRM61_RAT	2, ., 1, ., 1, ., 2, 2, 0	0.5114	0.9071	0.7413	yes	no
A6H791	TRM61_BOVIN	2, ., 1, ., 1, ., 2, 2, 0	0.5159	0.9071	0.7543	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1.36	0.824
3rd Layer	2.1.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00020706001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (324 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00021307001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)				•			•		0.761
	GSVIVG00019376001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa)				•					0.699
	GSVIVG00032354001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (252 aa)				•			•		0.696
	GSVIVG00020673001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (607 aa)				•			•		0.641
	GSVIVG00028006001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (318 aa)				•					0.624
	GSVIVG00016571001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (474 aa)				•					0.620
	GSVIVG00038815001	SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (1139 aa)				•					0.612
	GSVIVG00036355001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (842 aa)				•			•		0.610
	GSVIVG00000661001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (701 aa)				•			•		0.609
	GSVIVG00034559001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (840 aa)				•					0.601

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	237
pfam08704	309	pfam08704, GCD14, tRNA methyltransferase complex G	1e-132
COG2519	256	COG2519, GCD14, tRNA(1-methyladenosine) methyltran	4e-70
COG2518	209	COG2518, Pcm, Protein-L-isoaspartate carboxylmethy	8e-12
PRK00312	212	PRK00312, pcm, protein-L-isoaspartate O-methyltran	1e-07
pfam01135	210	pfam01135, PCMT, Protein-L-isoaspartate(D-aspartat	1e-07
COG4122	219	COG4122, COG4122, Predicted O-methyltransferase [G	2e-07
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	5e-07
COG2242	187	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme	1e-06
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	6e-06
TIGR02469	124	TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer	7e-06
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	1e-05
PRK13944	205	PRK13944, PRK13944, protein-L-isoaspartate O-methy	2e-05
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	2e-04
TIGR00080	215	TIGR00080, pimt, protein-L-isoaspartate(D-aspartat	6e-04
PRK13942	212	PRK13942, PRK13942, protein-L-isoaspartate O-methy	0.001
TIGR00563	426	TIGR00563, rsmB, ribosomal RNA small subunit methy	0.001
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	0.002

>gnl|CDD|219979 pfam08704, GCD14, tRNA methyltransferase complex GCD14 subunit

 Score =  375 bits (964), Expect = e-132
 Identities = 132/219 (60%), Positives = 158/219 (72%), Gaps = 1/219 (0%)

Query: 10  ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGG 69
           +S+   I+EGD VIVY  HD M  + V +    Q ++G  +HSD IGK +GS V S+KGG
Sbjct: 4   LSYKDRIEEGDTVIVYLGHDSMVPLTVERGGTTQTKYGVLRHSDIIGKRYGSKVSSSKGG 63

Query: 70  FVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARA 129
           FVY+L PTPELWTL L HRTQILY  DIS +IM LEL PG +V ESGTGSGSL+ ++AR 
Sbjct: 64  FVYVLQPTPELWTLALPHRTQILYTPDISLIIMMLELKPGSVVCESGTGSGSLSHAIART 123

Query: 130 VAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDL 189
           VAPTGH+YTF+FHEQRA  ARE+F   G+ S VTV  RD+   GF  E S  AD++FLDL
Sbjct: 124 VAPTGHLYTFEFHEQRADKAREEFREHGLDSLVTVTHRDVCKSGFDTEVSNKADAVFLDL 183

Query: 190 PQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESLR 227
           P PW AIP A K LK + G LCSFSPCIEQVQR+C +L 
Sbjct: 184 PAPWEAIPHAAKALKVEGGRLCSFSPCIEQVQRTCLALA 222

GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA. Length = 309

>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

 Score =  214 bits (548), Expect = 4e-70
 Identities = 82/213 (38%), Positives = 122/213 (57%), Gaps = 6/213 (2%)

Query: 16  IKEGDLVI-VYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLL 74
            KEGD V+   ER      V++     F    G   H + IGKP+G ++ S+ G   Y+L
Sbjct: 2   FKEGDPVLLTDERGRR-YLVRLTPGEKFHTDLGIIPHDEVIGKPYGEVIKSHLGVKFYVL 60

Query: 75  APTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTG 134
            PTPE + L +  RTQI+Y  D  +++  L + PG  VLE+GTGSG+LT  LARAV P G
Sbjct: 61  KPTPEDYLLSMKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEG 120

Query: 135 HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWL 194
           HV T++  E  A +ARE+    G+   VT+ + D++     ++     D++FLDLP PW 
Sbjct: 121 HVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDV----DAVFLDLPDPWN 176

Query: 195 AIPSAKKMLKQDGILCSFSPCIEQVQRSCESLR 227
            +      LK  G++  +SP +EQV+++ E+LR
Sbjct: 177 VLEHVSDALKPGGVVVVYSPTVEQVEKTVEALR 209

Length = 256

>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 61.9 bits (151), Expect = 8e-12
 Identities = 40/115 (34%), Positives = 54/115 (46%), Gaps = 18/115 (15%)

Query: 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS 159
           ++  LEL PG  VLE GTGSG     LAR V   G V + +  E+ A  AR + E  G  
Sbjct: 64  MLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYE 120

Query: 160 SFVTVGVRDIQGQGFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGIL 209
           + VTV   D   +G+P+E     D I +     ++P+  L        LK  G L
Sbjct: 121 N-VTVRHGD-GSKGWPEE--APYDRIIVTAAAPEVPEALL------DQLKPGGRL 165

Length = 209

>gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase; Reviewed

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 20/116 (17%)

Query: 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS 159
           +   LEL PG  VLE GTGSG     LA  V     V++ +  +     A+   ++ G+ 
Sbjct: 70  MTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLH 126

Query: 160 SFVTVGVRDIQGQ-GFPDEFSGLADSI-----FLDLPQPWLAIPSAKKMLKQDGIL 209
           +   V VR   G  G+P       D I       ++P+  L      + LK+ GIL
Sbjct: 127 N---VSVRHGDGWKGWPAY--APFDRILVTAAAPEIPRALL------EQLKEGGIL 171

Length = 212

>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 17/113 (15%)

Query: 103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFV 162
            LEL PG  VLE G+GSG LT   AR V   G V + +   +    AR + E+ G+ + V
Sbjct: 68  LLELKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELVEIARRNLEKLGLEN-V 126

Query: 163 TVGVRDIQG-QGFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGIL 209
            V V D  G QG+P EF+   D+I +     ++P+  +        LK+ G L
Sbjct: 127 IVVVGD--GRQGWP-EFAPY-DAIHVGAAAPEIPEALI------DQLKEGGRL 169

Length = 210

>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 8/116 (6%)

Query: 99  FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV 158
            + +   L     +LE GT  G     +A A+   G + T +  E+RA  ARE+    GV
Sbjct: 50  LLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV 109

Query: 159 SSFVTVGVRDIQGQGFPDEFSGLADSIFLD-----LPQPWLAIPSAKKMLKQDGIL 209
              + + +             G  D +F+D      P+    +  A  +L+  G++
Sbjct: 110 DDRIELLLGGDALDVLSRLLDGSFDLVFIDADKADYPE---YLERALPLLRPGGLI 162

Length = 219

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 47.8 bits (114), Expect = 5e-07
 Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 10/117 (8%)

Query: 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS--SFVTVG 165
            G  VL+ G G+G LT  LA  + P   V   D  E+    A+E+ ++ G     F+   
Sbjct: 3   SGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQGD 62

Query: 166 VRDIQGQGFPDEFSGLADSIFLDLPQPWLAIP-----SAKKMLKQDGILCSFSPCIE 217
           + ++      D      D +  +     L  P        ++LK  G+L    P + 
Sbjct: 63  IEELPQLQLEDN---SFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDPVLL 116

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism]

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163
           L   PG  + + G G+GS+T   A A  P+G V   +  E+       +  R GV     
Sbjct: 30  LRPRPGDRLWDIGAGTGSITIEWALA-GPSGRVIAIERDEEALELIERNAARFGVD---- 84

Query: 164 VGVRDIQGQGFPDEFSGLA--DSIFL 187
             +  ++G   P+    L   D+IF+
Sbjct: 85  -NLEVVEGDA-PEALPDLPSPDAIFI 108

Length = 187

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 43.5 bits (103), Expect = 6e-06
 Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 11/106 (10%)

Query: 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR 167
           PG  VL+ G G+GSL   LAR   P   V   D   +    ARE+ +   +   +T    
Sbjct: 1   PGARVLDIGCGTGSLAIELARL-FPGARVTGVDLSPEMLELARENAKL-ALGPRITFVQG 58

Query: 168 DIQGQGFPDEFSGLA--DSIFLDLPQPWLA--IPSAKKMLKQDGIL 209
           D      PD    L   D++F+      L   + +   +LK  G L
Sbjct: 59  DA-----PDALDLLEGFDAVFIGGGGGDLLELLDALASLLKPGGRL 99

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS 159
            +  L L PG ++ + G G+GS+T   AR V P G VY  + + +       +  R GVS
Sbjct: 11  TLSKLRLRPGDVLWDIGAGTGSVTIEAARLV-PNGRVYAIERNPEALDLIERNLRRFGVS 69

Query: 160 SFVTV 164
           + V V
Sbjct: 70  NIVIV 74

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 27/74 (36%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163
           L + PG  VL+ G G G+    LAR V P G V   D  E   A A+E     G +    
Sbjct: 15  LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFV 74

Query: 164 VGVRDIQGQGFPDE 177
            G  D  G  FPD 
Sbjct: 75  RG--DADGLPFPDG 86

Length = 241

>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 100 VIMYLELV---PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT 156
           V M  EL+   PG  +LE GTGSG      A A+   G VYT +  ++ A  A ++ ER 
Sbjct: 61  VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERL 120

Query: 157 GVSSFVTV 164
           G    V V
Sbjct: 121 GYWGVVEV 128

Length = 205

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 16/119 (13%)

Query: 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD 168
           G  VL+ G GSG+   + ARA  P   V   +   + AA AR      G++  V V V D
Sbjct: 1   GDRVLDPGAGSGAFLLAAARAG-PDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGD 59

Query: 169 IQGQGFPDEFSGLADSIFLDLP---------QPW----LAIPSAKKMLKQDGILCSFSP 214
              +   +   G  D +  + P                  + +A ++LK  G+L   +P
Sbjct: 60  A--RELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVVITP 116

This family contains methyltransferase domains. Length = 117

>gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate) O-methyltransferase

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 20/48 (41%), Positives = 23/48 (47%)

Query: 103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAR 150
            LEL PG  VLE GTGSG     LA  V   G V + +   + A  A 
Sbjct: 72  LLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAE 119

This is an all-kingdom (but not all species) full-length ortholog enzyme for repairing aging proteins. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt [Protein fate, Protein modification and repair]. Length = 215

>gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163
           L+L  G  VLE GTGSG     +A  V  +G V T +   + A  A++  ++ G  + V 
Sbjct: 72  LDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDN-VE 130

Query: 164 VGVRD 168
           V V D
Sbjct: 131 VIVGD 135

Length = 212

>gnl|CDD|233025 TIGR00563, rsmB, ribosomal RNA small subunit methyltransferase RsmB

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 94  IADIS--FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASARE 151
           + D S  +V  +L       +L++    G  TT +   +AP   V   D HE R     E
Sbjct: 222 VQDASAQWVATWLAPQNEETILDACAAPGGKTTHILE-LAPQAQVVALDIHEHRLKRVYE 280

Query: 152 DFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP 190
           + +R G++        D +G     E +   D I LD P
Sbjct: 281 NLKRLGLTIKAETKDGDGRGPSQWAE-NEQFDRILLDAP 318

This protein is also known as sun protein. The reading frame was originally interpreted as two reading frames, fmu and fmv. The recombinant protein from E. coli was shown to methylate only C967 of small subunit (16S) ribosomal RNA and to produce only m5C at that position. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles [Protein synthesis, tRNA and rRNA base modification]. Length = 426

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 17/103 (16%)

Query: 113 LESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ 172
           L+ G G+G L  +LAR       V   D   +  A AR+        +     V D +  
Sbjct: 1   LDVGCGTGLLAEALARRGG--ARVTGVDLSPEMLALARKR-------APRKFVVGDAEDL 51

Query: 173 GFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILC 210
            FPDE     D +        LP P  A+    ++LK  G L 
Sbjct: 52  PFPDES---FDVVVSSLVLHHLPDPERALREIARVLKPGGKLV 91

Members of this family are SAM dependent methyltransferases. Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	237
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	100.0
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	100.0
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.97
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.8
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.78
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.77
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.76
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.74
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.73
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.72
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.71
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.71
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.71
PRK04266	226	fibrillarin; Provisional	99.7
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.7
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.7
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.69
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.69
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.69
PLN02244	340	tocopherol O-methyltransferase	99.68
COG4123	248	Predicted O-methyltransferase [General function pr	99.68
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.67
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.67
PRK07402	196	precorrin-6B methylase; Provisional	99.66
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.66
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.65
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.64
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.64
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	99.64
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.63
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.62
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	99.62
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.62
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.62
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.62
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	99.61
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.6
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.6
PRK14967	223	putative methyltransferase; Provisional	99.59
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.59
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.59
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	99.59
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.59
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.59
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.58
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.58
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.58
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.58
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.57
COG4122	219	Predicted O-methyltransferase [General function pr	99.57
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.57
PRK14968	188	putative methyltransferase; Provisional	99.57
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.57
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.57
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.56
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.56
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.56
PTZ00146	293	fibrillarin; Provisional	99.56
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.56
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.55
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.55
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.55
PRK08317	241	hypothetical protein; Provisional	99.55
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.55
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.54
PRK11207	197	tellurite resistance protein TehB; Provisional	99.54
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.54
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.54
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.54
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.53
PRK04457	262	spermidine synthase; Provisional	99.53
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.53
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.53
TIGR00438	188	rrmJ cell division protein FtsJ.	99.52
PLN02476	278	O-methyltransferase	99.52
PLN02490	340	MPBQ/MSBQ methyltransferase	99.52
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.52
PLN02336	475	phosphoethanolamine N-methyltransferase	99.51
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.51
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.51
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.51
PLN03075	296	nicotianamine synthase; Provisional	99.51
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.5
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.5
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.5
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.5
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.49
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.49
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	99.48
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.48
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.48
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.47
COG2890	280	HemK Methylase of polypeptide chain release factor	99.47
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.47
PRK00811	283	spermidine synthase; Provisional	99.47
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.46
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.46
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.45
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.45
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.43
COG2521	287	Predicted archaeal methyltransferase [General func	99.41
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.41
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.4
PRK12335	287	tellurite resistance protein TehB; Provisional	99.39
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.39
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	99.39
KOG1271	227	consensus Methyltransferases [General function pre	99.38
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.37
PRK06922	677	hypothetical protein; Provisional	99.37
PLN02366	308	spermidine synthase	99.36
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.35
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.35
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.35
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.35
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.35
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.35
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.34
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.33
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.33
PRK01581	374	speE spermidine synthase; Validated	99.33
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.32
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.31
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	99.29
PLN02823	336	spermine synthase	99.29
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.29
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	99.29
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.29
KOG4300	252	consensus Predicted methyltransferase [General fun	99.28
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	99.28
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	99.28
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.28
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.27
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	99.27
PRK03612	521	spermidine synthase; Provisional	99.27
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	99.26
PRK05785	226	hypothetical protein; Provisional	99.26
PLN02672	1082	methionine S-methyltransferase	99.26
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.25
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.25
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	99.23
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.23
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.23
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.23
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.22
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.21
KOG2904	328	consensus Predicted methyltransferase [General fun	99.21
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	99.21
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.21
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.2
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.2
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.19
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.19
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.19
PLN02336	475	phosphoethanolamine N-methyltransferase	99.19
PHA03412	241	putative methyltransferase; Provisional	99.18
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	99.18
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.16
PF14801	54	GCD14_N: tRNA methyltransferase complex GCD14 subu	99.16
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	99.16
TIGR03438	301	probable methyltransferase. This model represents	99.16
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.15
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.15
PRK00536	262	speE spermidine synthase; Provisional	99.13
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	99.12
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.12
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.12
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.12
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.12
PHA03411	279	putative methyltransferase; Provisional	99.12
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	99.12
PLN02740	381	Alcohol dehydrogenase-like	99.12
COG2520	341	Predicted methyltransferase [General function pred	99.11
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.11
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	99.1
PLN02827	378	Alcohol dehydrogenase-like	99.1
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.09
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	99.09
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	99.09
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	99.09
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	99.09
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	99.08
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	99.08
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.08
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.08
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.07
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.07
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.06
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.06
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.05
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	99.04
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	99.04
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	99.02
PRK06202	232	hypothetical protein; Provisional	99.02
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.01
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	99.01
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.0
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.99
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	98.99
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.99
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.98
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.98
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.98
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	98.95
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.94
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.94
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	98.91
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.91
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.91
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	98.9
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	98.9
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	98.88
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.88
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.87
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.84
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	98.84
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.84
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.84
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.83
PLN02586	360	probable cinnamyl alcohol dehydrogenase	98.81
KOG3010	261	consensus Methyltransferase [General function pred	98.81
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.81
KOG2899	288	consensus Predicted methyltransferase [General fun	98.79
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.77
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.77
PRK10083	339	putative oxidoreductase; Provisional	98.77
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	98.76
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.76
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	98.75
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	98.73
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.73
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.72
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	98.72
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.69
PLN02178	375	cinnamyl-alcohol dehydrogenase	98.68
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	98.68
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.67
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.66
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	98.66
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.65
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.64
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.63
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.62
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	98.62
COG4076	252	Predicted RNA methylase [General function predicti	98.61
KOG2361	264	consensus Predicted methyltransferase [General fun	98.6
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	98.6
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	98.59
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.59
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.59
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.58
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	98.58
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	98.57
PLN02514	357	cinnamyl-alcohol dehydrogenase	98.55
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.55
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	98.54
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.54
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	98.54
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.53
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	98.52
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.52
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	98.51
PLN02702	364	L-idonate 5-dehydrogenase	98.51
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	98.49
PRK04148	134	hypothetical protein; Provisional	98.48
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	98.47
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.45
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.44
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.41
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	98.41
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	98.4
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	98.39
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	98.37
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.37
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	98.36
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	98.36
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	98.35
KOG2730	263	consensus Methylase [General function prediction o	98.34
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	98.33
PF13679	141	Methyltransf_32: Methyltransferase domain	98.33
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.32
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	98.31
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	98.3
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.29
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	98.27
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.26
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	98.25
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	98.24
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.23
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	98.22
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	98.22
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	98.22
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	98.21
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	98.21
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	98.21
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	98.2
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.2
PRK10742	250	putative methyltransferase; Provisional	98.19
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	98.18
KOG3115	249	consensus Methyltransferase-like protein [General	98.18
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	98.17
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	98.16
COG3897	218	Predicted methyltransferase [General function pred	98.16
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	98.12
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	98.11
COG0286	489	HsdM Type I restriction-modification system methyl	98.1
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	98.1
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	98.05
KOG2671	421	consensus Putative RNA methylase [Replication, rec	98.04
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.04
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.0
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	98.0
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	97.99
COG4798	238	Predicted methyltransferase [General function pred	97.99
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	97.99
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	97.98
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	97.96
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	97.96
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.95
PRK13771	334	putative alcohol dehydrogenase; Provisional	97.94
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	97.93
KOG2940	325	consensus Predicted methyltransferase [General fun	97.92
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	97.9
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	97.88
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.88
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.87
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.86
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	97.81
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	97.8
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.79
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.79
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	97.75
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	97.75
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.73
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	97.71
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	97.7
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	97.69
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.68
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.66
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	97.66
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	97.64
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	97.61
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	97.55
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	97.54
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.53
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	97.52
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	97.45
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	97.45
KOG1227	351	consensus Putative methyltransferase [General func	97.44
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	97.44
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.43
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	97.42
KOG4058	199	consensus Uncharacterized conserved protein [Funct	97.35
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.33
PHA01634	156	hypothetical protein	97.29
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.27
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.24
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	97.19
COG1568	354	Predicted methyltransferases [General function pre	97.18
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.14
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.07
KOG2360	413	consensus Proliferation-associated nucleolar prote	97.07
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	97.0
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	96.98
KOG1501	636	consensus Arginine N-methyltransferase [General fu	96.97
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.93
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	96.9
PF04189	299	Gcd10p: Gcd10p family; InterPro: IPR007316 eIF-3 i	96.87
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	96.85
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	96.85
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	96.82
COG2130	340	Putative NADP-dependent oxidoreductases [General f	96.67
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	96.59
PRK11524	284	putative methyltransferase; Provisional	96.58
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	96.57
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	96.52
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	96.31
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	96.31
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	96.29
KOG2352	482	consensus Predicted spermine/spermidine synthase [	96.28
KOG1331	293	consensus Predicted methyltransferase [General fun	96.26
PRK13699	227	putative methylase; Provisional	96.24
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	96.16
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	96.15
KOG2352	482	consensus Predicted spermine/spermidine synthase [	96.15
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	96.14
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	96.13
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	96.1
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	96.04
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.04
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	96.02
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.0
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	96.0
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	95.81
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	95.77
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.77
TIGR00497	501	hsdM type I restriction system adenine methylase (	95.75
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	95.73
PLN02494	477	adenosylhomocysteinase	95.7
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	95.69
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	95.64
PRK07340	304	ornithine cyclodeaminase; Validated	95.61
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	95.57
PTZ00354	334	alcohol dehydrogenase; Provisional	95.55
cd08252	336	AL_MDR Arginate lyase and other MDR family members	95.49
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	95.49
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	95.38
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	95.26
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	95.18
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	95.16
PRK08306	296	dipicolinate synthase subunit A; Reviewed	95.15
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	95.13
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	95.12
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	95.12
KOG3924	419	consensus Putative protein methyltransferase invol	95.11
PRK08618	325	ornithine cyclodeaminase; Validated	95.05
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	95.03
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	95.01
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	94.96
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	94.95
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	94.93
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	94.92
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	94.91
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	94.89
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	94.88
PRK06141	314	ornithine cyclodeaminase; Validated	94.85
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	94.68
PRK06823	315	ornithine cyclodeaminase; Validated	94.65
PRK13699	227	putative methylase; Provisional	94.6
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	94.6
COG3129	292	Predicted SAM-dependent methyltransferase [General	94.58
PTZ00357	1072	methyltransferase; Provisional	94.54
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	94.5
KOG2078	495	consensus tRNA modification enzyme [RNA processing	94.5
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	94.46
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	94.46
PTZ00075	476	Adenosylhomocysteinase; Provisional	94.45
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	94.39
PRK10669	558	putative cation:proton antiport protein; Provision	94.36
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	94.32
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	94.23
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	94.16
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	94.15
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	94.11
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.1
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	94.09
PRK07589	346	ornithine cyclodeaminase; Validated	94.08
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	94.06
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	93.95
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	93.94
PRK11524	284	putative methyltransferase; Provisional	93.83
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	93.83
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	93.7
PRK03562	621	glutathione-regulated potassium-efflux system prot	93.68
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	93.64
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	93.57
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	93.5
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	93.49
COG4301	321	Uncharacterized conserved protein [Function unknow	93.49
PRK06940	275	short chain dehydrogenase; Provisional	93.41
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	93.35
PRK03659	601	glutathione-regulated potassium-efflux system prot	93.22
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	93.15
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	93.1
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.87
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	92.74
PRK08324	681	short chain dehydrogenase; Validated	92.72
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	92.7
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	92.7
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	92.68
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	92.63
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	92.58
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	92.57
PRK07417	279	arogenate dehydrogenase; Reviewed	92.5
COG1565	370	Uncharacterized conserved protein [Function unknow	92.49
COG2961	279	ComJ Protein involved in catabolism of external DN	92.45
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	92.38
PRK08507	275	prephenate dehydrogenase; Validated	92.36
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	92.31
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	92.23
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	92.22
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.19
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	92.11
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.09
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.08
PLN03209	576	translocon at the inner envelope of chloroplast su	92.0
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	91.97
PRK08223	287	hypothetical protein; Validated	91.95
PRK08339	263	short chain dehydrogenase; Provisional	91.84
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	91.8
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	91.79
PRK15116	268	sulfur acceptor protein CsdL; Provisional	91.77
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	91.77
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	91.76
PRK05867	253	short chain dehydrogenase; Provisional	91.73
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	91.72
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	91.67
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	91.6
PRK05562	223	precorrin-2 dehydrogenase; Provisional	91.59
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	91.56
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	91.54

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.8e-38  Score=242.02  Aligned_cols=217  Identities=38%  Similarity=0.650  Sum_probs=205.2

Q ss_pred             CCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEEEEECCCHHHHhhhcCCccccccc
Q 026506           15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYI   94 (237)
Q Consensus        15 ~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (237)
                      +||+||+|++...+.+.+...+.++..++++.|.+++++++|+++|..+.++.|.-++++.|.+.++...+++..++++|
T Consensus         1 ~~~~gd~vlL~~~~~~~~lv~~~~~~~~~t~~G~i~~~~vigk~~G~~i~s~~G~~f~vl~p~~~d~~~~~~R~tQiIyP   80 (256)
T COG2519           1 PFKEGDPVLLTDERGRRYLVRLTPGEKFHTDLGIIPHDEVIGKPYGEVIKSHLGVKFYVLKPTPEDYLLSMKRRTQIIYP   80 (256)
T ss_pred             CCCCCCeEEEEecCCcEEEEeccCCcccccceeeechhhhcCCCCCceEEeeCCceEEEeCCCHHHHHHhCcCCCceecC
Confidence            58999999999999999998888899999999999999999999999999999988899999999999999999999999


Q ss_pred             ccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCC
Q 026506           95 ADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF  174 (237)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~  174 (237)
                      .++++++..+++.||++|+|.|.|+|.++..++...++.++|+++|+.+++++.|++|++..++.+++.+..+|+.+...
T Consensus        81 KD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~  160 (256)
T COG2519          81 KDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID  160 (256)
T ss_pred             CCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc
Confidence            99999999999999999999999999999999999999899999999999999999999999998889999999985333


Q ss_pred             CCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCccccc
Q 026506          175 PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGKES  235 (237)
Q Consensus       175 ~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~~  235 (237)
                      +    ..||+||+|.|+||.+++.+.+.|+|||.+++|+|+.+|+++..+.|++ ||.+++.
T Consensus       161 ~----~~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~  218 (256)
T COG2519         161 E----EDVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEA  218 (256)
T ss_pred             c----cccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhh
Confidence            3    4799999999999999999999999999999999999999999999999 7988764

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.8e-36  Score=232.19  Aligned_cols=229  Identities=60%  Similarity=0.989  Sum_probs=215.8

Q ss_pred             CCCCcccCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEEEEECCCHHHHhhhc
Q 026506            6 PTKKISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVL   85 (237)
Q Consensus         6 ~~~~~~~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   85 (237)
                      |....+|...+++||.|+++...+.|+.+.+..+..+++++|.+++.+++|+++|..+....|+|+|+++|++++|...+
T Consensus         3 ~~~f~syk~~ie~GDlvi~~~~~~~m~p~~v~r~~~~~~~yGa~~h~~iIGK~~G~~v~sskG~~vylL~PTpELWTl~L   82 (314)
T KOG2915|consen    3 PMSFTSYKRRIEEGDLVIAYVGRGEMKPVKVFREGTFQTRYGALPHSDIIGKPYGSKVASSKGKFVYLLQPTPELWTLAL   82 (314)
T ss_pred             CccccChhhhcccCCEEEEEEccCceEEEEEeccceeeccccccchhheecCCccceeeecCCcEEEEecCChHHhhhhc
Confidence            45567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 026506           86 SHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG  165 (237)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~  165 (237)
                      +++.+++|+.++++++..++++||.+|+|-|+|+|.++.++++..+|.++++.+|..+.+.+.|++.+...++.+++++.
T Consensus        83 phRTQI~Yt~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~  162 (314)
T KOG2915|consen   83 PHRTQILYTPDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVT  162 (314)
T ss_pred             cCcceEEecccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998889999


Q ss_pred             EccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCC-EEEEEeCCHHHHHHHHHHHHh-cCccccc
Q 026506          166 VRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDG-ILCSFSPCIEQVQRSCESLRL-NFTGKES  235 (237)
Q Consensus       166 ~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG-~l~~~~~~~~~~~~~~~~l~~-~f~~v~~  235 (237)
                      +.|+....+... ...+|.||+|.|.||.++..+.+.||.+| +++-++||++|+++.++.|+. +|.+++.
T Consensus       163 hrDVc~~GF~~k-s~~aDaVFLDlPaPw~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~i~~  233 (314)
T KOG2915|consen  163 HRDVCGSGFLIK-SLKADAVFLDLPAPWEAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIEIET  233 (314)
T ss_pred             EeecccCCcccc-ccccceEEEcCCChhhhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCceEEE
Confidence            999998766642 26799999999999999999999999776 999999999999999999999 8987654

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.97  E-value=7.9e-31  Score=205.97  Aligned_cols=167  Identities=59%  Similarity=1.022  Sum_probs=136.1

Q ss_pred             cEEEEECCCHHHHhhhcCCcccccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 026506           69 GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAAS  148 (237)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~  148 (237)
                      +|.|++.|++++|...+++..+++||.+++.++..+++.||++|+|.|.|+|.++..+++.+++.++|+.+|.++++.+.
T Consensus         1 g~v~vl~Pt~e~~~~~l~rrtQIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~   80 (247)
T PF08704_consen    1 GFVYVLRPTPELWTLSLPRRTQIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEK   80 (247)
T ss_dssp             ---------HHHHHHTS-SSS----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHH
T ss_pred             CCccccchhHHHHHHhccCCcceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcc-cCCCEEEEEeCCHHHHHHHHHHHH
Q 026506          149 AREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKML-KQDGILCSFSPCIEQVQRSCESLR  227 (237)
Q Consensus       149 a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L-~~gG~l~~~~~~~~~~~~~~~~l~  227 (237)
                      |+++++.+++.+++.+.+.|+.+..+.......+|.||+|.|+||.++..+.+.| ++||++++|+||++|+.++++.|+
T Consensus        81 A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~  160 (247)
T PF08704_consen   81 ARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALR  160 (247)
T ss_dssp             HHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCceeEecceecccccccccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHH
Confidence            9999999999877999999997655643333679999999999999999999999 999999999999999999999999


Q ss_pred             h-cCccccc
Q 026506          228 L-NFTGKES  235 (237)
Q Consensus       228 ~-~f~~v~~  235 (237)
                      + +|.++++
T Consensus       161 ~~gf~~i~~  169 (247)
T PF08704_consen  161 EHGFTDIET  169 (247)
T ss_dssp             HTTEEEEEE
T ss_pred             HCCCeeeEE
Confidence            9 8988765

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.80  E-value=5.4e-19  Score=137.95  Aligned_cols=133  Identities=28%  Similarity=0.392  Sum_probs=112.7

Q ss_pred             ECCCHHHHhhhcCCcccccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026506           74 LAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDF  153 (237)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~  153 (237)
                      +.+.+|.++..++-+.+..|...   ++......+|.+|||+|||||-++..+++..+ .++|+++|+|+.|++.++++.
T Consensus        20 ia~~YD~~n~~~S~g~~~~Wr~~---~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~   95 (238)
T COG2226          20 VAKKYDLMNDLMSFGLHRLWRRA---LISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKL   95 (238)
T ss_pred             hHHHHHhhcccccCcchHHHHHH---HHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHh
Confidence            44455666656666666666655   66666777999999999999999999999986 789999999999999999999


Q ss_pred             HHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE-----eCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          154 ERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       154 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ...+..+ ++++.+|+.+.++++   .+||+|.+     +.++...+|+++.|+|||||+++++..
T Consensus        96 ~~~~~~~-i~fv~~dAe~LPf~D---~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~  157 (238)
T COG2226          96 KKKGVQN-VEFVVGDAENLPFPD---NSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEF  157 (238)
T ss_pred             hccCccc-eEEEEechhhCCCCC---CccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEc
Confidence            8888777 999999999988888   89999975     567888899999999999999987753

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.78  E-value=1.1e-18  Score=137.33  Aligned_cols=134  Identities=28%  Similarity=0.398  Sum_probs=84.2

Q ss_pred             EECCCHHHHhhhcCCcccccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026506           73 LLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASARED  152 (237)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~  152 (237)
                      .+.+.+|..+..++.+....|...   +++.+...+|.+|||+|||+|.++..+++..++.++|+++|++++|++.|+++
T Consensus        15 ~ia~~YD~~n~~ls~g~~~~wr~~---~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k   91 (233)
T PF01209_consen   15 RIAPRYDRMNDLLSFGQDRRWRRK---LIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKK   91 (233)
T ss_dssp             ----------------------SH---HHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHH
T ss_pred             HHHHHhCCCccccCCcHHHHHHHH---HHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHH
Confidence            345555655555554555555553   56667788999999999999999999998877778999999999999999999


Q ss_pred             HHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE-----eCCChhchHHHHHhcccCCCEEEEEe
Q 026506          153 FERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       153 ~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ....+..+ +++.++|+.+.++++   +.||+|++     +.++....+++++++|||||+++++.
T Consensus        92 ~~~~~~~~-i~~v~~da~~lp~~d---~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile  153 (233)
T PF01209_consen   92 LKREGLQN-IEFVQGDAEDLPFPD---NSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILE  153 (233)
T ss_dssp             HHHTT--S-EEEEE-BTTB--S-T---T-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHhhCCCC-eeEEEcCHHHhcCCC---CceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEee
Confidence            98877765 999999999877776   88999986     45677789999999999999998664

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.77  E-value=4.6e-17  Score=120.97  Aligned_cols=127  Identities=24%  Similarity=0.312  Sum_probs=111.6

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      ..+..+.+++++.++|+|||+|..++.++ ..++.++++++|.++++++..++|.++++.++ +++..+|+.+ .++.. 
T Consensus        25 l~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n-~~vv~g~Ap~-~L~~~-  100 (187)
T COG2242          25 LTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDN-LEVVEGDAPE-ALPDL-  100 (187)
T ss_pred             HHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCc-EEEEeccchH-hhcCC-
Confidence            46788899999999999999999999999 56788999999999999999999999999777 9999999874 33321 


Q ss_pred             CCCCCEEEEeCC-ChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cC
Q 026506          179 SGLADSIFLDLP-QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NF  230 (237)
Q Consensus       179 ~~~~D~v~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f  230 (237)
                       ..+|.||+... .....++.+...|+|||++++.....+.....++.+++ +|
T Consensus       101 -~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~  153 (187)
T COG2242         101 -PSPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGG  153 (187)
T ss_pred             -CCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCC
Confidence             36999999765 33468999999999999999999999999999999999 76

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.76  E-value=6.9e-17  Score=124.88  Aligned_cols=140  Identities=23%  Similarity=0.288  Sum_probs=111.8

Q ss_pred             cccccHHH-HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 026506           92 LYIADISF-VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ  170 (237)
Q Consensus        92 ~~~~~~~~-~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~  170 (237)
                      +....++. .+..+.+.++.+|||+|||+|.++..++...++..+++++|+++.+++.+++++..+++.+++.+..+|+.
T Consensus        23 ~t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~  102 (198)
T PRK00377         23 MTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAP  102 (198)
T ss_pred             CCHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechh
Confidence            33333333 46778899999999999999999999988776667999999999999999999998885445888888886


Q ss_pred             CCCCCCCCCCCCCEEEEeCC--ChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCcccc
Q 026506          171 GQGFPDEFSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGKE  234 (237)
Q Consensus       171 ~~~~~~~~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~  234 (237)
                      +. ++. ..+.||.|+++..  .....++.+.+.|+|||++++.....++..+..+.+++ +| +++
T Consensus       103 ~~-l~~-~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~-~~~  166 (198)
T PRK00377        103 EI-LFT-INEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGF-NLE  166 (198)
T ss_pred             hh-Hhh-cCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCC-CeE
Confidence            41 111 1257999998543  45678999999999999999888888889999999988 77 444

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=7.8e-17  Score=122.29  Aligned_cols=122  Identities=33%  Similarity=0.380  Sum_probs=104.0

Q ss_pred             cCCcccccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE
Q 026506           85 LSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV  164 (237)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~  164 (237)
                      ...+..+..|...+.+++.+.++++++|||||||+|+.+..+++..   .+|+++|..++..+.|+++++..|+.| +.+
T Consensus        49 i~~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v  124 (209)
T COG2518          49 IGCGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYEN-VTV  124 (209)
T ss_pred             CCCCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCc-eEE
Confidence            3355566667788889999999999999999999999999999885   499999999999999999999999988 999


Q ss_pred             EEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          165 GVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       165 ~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .++|.. ..++..  ..||.|+.....+. .-+.+.+.|++||++++-.-
T Consensus       125 ~~gDG~-~G~~~~--aPyD~I~Vtaaa~~-vP~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         125 RHGDGS-KGWPEE--APYDRIIVTAAAPE-VPEALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             EECCcc-cCCCCC--CCcCEEEEeeccCC-CCHHHHHhcccCCEEEEEEc
Confidence            999998 566653  78999998765543 55778899999999986543

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.73  E-value=1.3e-16  Score=126.36  Aligned_cols=111  Identities=21%  Similarity=0.361  Sum_probs=93.8

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ++..+.+.++.+|||+|||+|.++..++...++..+++++|+++++++.++++....+.++ +++..+|+.+..++.   
T Consensus        37 ~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~---  112 (231)
T TIGR02752        37 TMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHN-VELVHGNAMELPFDD---  112 (231)
T ss_pred             HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCc-eEEEEechhcCCCCC---
Confidence            6677788889999999999999999999887667899999999999999999988777655 899999987644444   


Q ss_pred             CCCCEEEEe-----CCChhchHHHHHhcccCCCEEEEEeC
Q 026506          180 GLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       180 ~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +.||+|+++     .+++..+++++.+.|+|||.+++..+
T Consensus       113 ~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  152 (231)
T TIGR02752       113 NSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET  152 (231)
T ss_pred             CCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence            689999864     45666789999999999999987653

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.72  E-value=2e-16  Score=127.22  Aligned_cols=111  Identities=22%  Similarity=0.233  Sum_probs=89.7

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH--cCCCCcEEEEEccccCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER--TGVSSFVTVGVRDIQGQGFPDE  177 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~--~~~~~~i~~~~~d~~~~~~~~~  177 (237)
                      ++..+.+.++.+|||+|||+|.++..+++..++.++|+++|++++|++.|+++...  .....++++..+|+.+.++++ 
T Consensus        65 ~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~-  143 (261)
T PLN02233         65 AVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDD-  143 (261)
T ss_pred             HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCC-
Confidence            44556778899999999999999988888776667999999999999999876532  122234899999998766655 


Q ss_pred             CCCCCCEEEE-----eCCChhchHHHHHhcccCCCEEEEEe
Q 026506          178 FSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       178 ~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                        +.||+|++     +.+++..+++++.+.|||||++++..
T Consensus       144 --~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d  182 (261)
T PLN02233        144 --CYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILD  182 (261)
T ss_pred             --CCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence              78999976     45677789999999999999998764

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.71  E-value=7.5e-16  Score=118.08  Aligned_cols=129  Identities=19%  Similarity=0.244  Sum_probs=105.9

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ++..+.+.++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++..++..+ +++..+|.. ..++    
T Consensus        23 ~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~~-~~~~----   95 (187)
T PRK08287         23 ALSKLELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEAP-IELP----   95 (187)
T ss_pred             HHHhcCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCch-hhcC----
Confidence            5567778889999999999999999998874 55799999999999999999998887755 888888874 2232    


Q ss_pred             CCCCEEEEeCC--ChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCccccc
Q 026506          180 GLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGKES  235 (237)
Q Consensus       180 ~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~~  235 (237)
                      +.||+|+++..  ....+++.+.+.|+|||++++......+..+..+.+++ +|..+++
T Consensus        96 ~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~  154 (187)
T PRK08287         96 GKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDC  154 (187)
T ss_pred             cCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceE
Confidence            57999998653  34568899999999999998877667778888888888 7876653

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.71  E-value=3.5e-16  Score=122.02  Aligned_cols=121  Identities=26%  Similarity=0.270  Sum_probs=99.7

Q ss_pred             cccccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q 026506           88 RTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR  167 (237)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~  167 (237)
                      +..+..|...+.+++.+++.++++|||+|||+|+++..+++..+..++|+++|+++++++.+++++...+..+ +++..+
T Consensus        56 g~~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~-v~~~~g  134 (212)
T PRK13942         56 GQTISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDN-VEVIVG  134 (212)
T ss_pred             CCEeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEEC
Confidence            3455667777778889999999999999999999999999887666799999999999999999999888766 999999


Q ss_pred             cccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          168 DIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       168 d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      |......+.   +.||+|+++...+ ...+.+.+.|||||++++..
T Consensus       135 d~~~~~~~~---~~fD~I~~~~~~~-~~~~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        135 DGTLGYEEN---APYDRIYVTAAGP-DIPKPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             CcccCCCcC---CCcCEEEECCCcc-cchHHHHHhhCCCcEEEEEE
Confidence            987432222   6799999876543 36678889999999988654

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.71  E-value=1.2e-16  Score=112.19  Aligned_cols=101  Identities=27%  Similarity=0.328  Sum_probs=83.1

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc-cCCCCCCCCCCCCCEEE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI-QGQGFPDEFSGLADSIF  186 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~~~~D~v~  186 (237)
                      |+.+|||+|||+|.++..+++.. +..+++++|+++++++.+++++...+...++++..+|+ ......    ..||+|+
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~~D~v~   75 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL----EPFDLVI   75 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS----SCEEEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC----CCCCEEE
Confidence            67899999999999999999954 45889999999999999999997677767799999999 322222    5799999


Q ss_pred             EeC-CC--------hhchHHHHHhcccCCCEEEEEe
Q 026506          187 LDL-PQ--------PWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       187 ~~~-~~--------~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +.. ..        ..++++++.+.|+|||++++-.
T Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   76 CSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             ECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            877 21        1246899999999999998643

...

>PRK04266 fibrillarin; Provisional

Probab=99.70  E-value=1.6e-15  Score=118.83  Aligned_cols=159  Identities=21%  Similarity=0.208  Sum_probs=109.3

Q ss_pred             CCCceEEeccCcEEEEECCCHHHHhhhcCCcccccccccHHHHHH---hcCCCCCCEEEEEccCccHHHHHHHHHhCCCc
Q 026506           58 PFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIM---YLELVPGCLVLESGTGSGSLTTSLARAVAPTG  134 (237)
Q Consensus        58 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~  134 (237)
                      .+|..+....+..++.+.|..               +...+.++.   .+.++++.+|||+|||+|.++..++...+ .+
T Consensus        34 ~~g~~~~~~~~~~~~~~~~~r---------------~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g   97 (226)
T PRK04266         34 VYGERLIKWEGVEYREWNPRR---------------SKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EG   97 (226)
T ss_pred             CCCceEEecCCcEEEEECCCc---------------cchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CC
Confidence            355656555555566666621               122222333   47889999999999999999999998874 57


Q ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCChhc---hHHHHHhcccCCCEEEE
Q 026506          135 HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWL---AIPSAKKMLKQDGILCS  211 (237)
Q Consensus       135 ~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~---~l~~~~~~L~~gG~l~~  211 (237)
                      +|+++|+++.+++.+.+++...  .+ +.+..+|+............||+|+++.+.++.   +++++.+.|||||.+++
T Consensus        98 ~V~avD~~~~ml~~l~~~a~~~--~n-v~~i~~D~~~~~~~~~l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI  174 (226)
T PRK04266         98 VVYAVEFAPRPMRELLEVAEER--KN-IIPILADARKPERYAHVVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLL  174 (226)
T ss_pred             eEEEEECCHHHHHHHHHHhhhc--CC-cEEEECCCCCcchhhhccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEE
Confidence            9999999999999887766543  34 788888876311001111469999998877653   48999999999999997


Q ss_pred             E------eCC---HHHHHHHHHHHHh-cCccccc
Q 026506          212 F------SPC---IEQVQRSCESLRL-NFTGKES  235 (237)
Q Consensus       212 ~------~~~---~~~~~~~~~~l~~-~f~~v~~  235 (237)
                      .      ...   ....++.++.+++ ||+.++.
T Consensus       175 ~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~  208 (226)
T PRK04266        175 AIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEV  208 (226)
T ss_pred             EEecccccCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            3      221   1223445677777 7876553

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.70  E-value=4.4e-16  Score=120.90  Aligned_cols=119  Identities=27%  Similarity=0.316  Sum_probs=96.2

Q ss_pred             ccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 026506           91 ILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ  170 (237)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~  170 (237)
                      +..+...+.+++.+.+.++++|||+|||+|..+..+++.+++.++|+++|+++++++.|++++...+..+++++..+|..
T Consensus        55 ~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~  134 (205)
T PRK13944         55 ISAPHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGK  134 (205)
T ss_pred             echHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence            33444455677888889999999999999999999988876567999999999999999999998887666899999987


Q ss_pred             CCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          171 GQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       171 ~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      + .++.  ...||+|+++..... ..+.+.+.|+|||++++-.
T Consensus       135 ~-~~~~--~~~fD~Ii~~~~~~~-~~~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        135 R-GLEK--HAPFDAIIVTAAAST-IPSALVRQLKDGGVLVIPV  173 (205)
T ss_pred             c-CCcc--CCCccEEEEccCcch-hhHHHHHhcCcCcEEEEEE
Confidence            4 2332  168999998866443 5678899999999997543

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.70  E-value=5.3e-16  Score=121.45  Aligned_cols=120  Identities=29%  Similarity=0.327  Sum_probs=98.0

Q ss_pred             ccccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q 026506           89 TQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD  168 (237)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d  168 (237)
                      ..+..|...+.+++.+.++++.+|||+|||+|.++..++...+..++|+++|+++++++.|++++...++.+ +++..+|
T Consensus        58 ~~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~-v~~~~~d  136 (215)
T TIGR00080        58 QTISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDN-VIVIVGD  136 (215)
T ss_pred             CEechHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCC-eEEEECC
Confidence            344455556678888899999999999999999999999887555789999999999999999999988866 9999999


Q ss_pred             ccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          169 IQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       169 ~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ..+ .++..  ..||+|+++.+.+. ..+.+.+.|+|||++++..
T Consensus       137 ~~~-~~~~~--~~fD~Ii~~~~~~~-~~~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       137 GTQ-GWEPL--APYDRIYVTAAGPK-IPEALIDQLKEGGILVMPV  177 (215)
T ss_pred             ccc-CCccc--CCCCEEEEcCCccc-ccHHHHHhcCcCcEEEEEE
Confidence            874 22221  57999998865443 6788899999999988654

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.69  E-value=1.7e-16  Score=119.66  Aligned_cols=127  Identities=28%  Similarity=0.334  Sum_probs=95.2

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      +++.+...++.+|||+|||+|.++..++... +..+++++|+++.+++.++++++.+++.+ +++...|..+ ..+.   
T Consensus        23 L~~~l~~~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~-~~~~---   96 (170)
T PF05175_consen   23 LLDNLPKHKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFE-ALPD---   96 (170)
T ss_dssp             HHHHHHHHTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTT-TCCT---
T ss_pred             HHHHHhhccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccc-cccc---
Confidence            4555554478899999999999999998874 55689999999999999999999999888 9999999874 3443   


Q ss_pred             CCCCEEEEeCCCh----------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHhcCccccc
Q 026506          180 GLADSIFLDLPQP----------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGKES  235 (237)
Q Consensus       180 ~~~D~v~~~~~~~----------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~v~~  235 (237)
                      +.||+|++|+|-.          ..+++.+.+.|+|||.++++.......++.   +++.|..+++
T Consensus        97 ~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~---l~~~f~~~~~  159 (170)
T PF05175_consen   97 GKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERL---LKELFGDVEV  159 (170)
T ss_dssp             TCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHH---HHHHHS--EE
T ss_pred             cceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHH---HHHhcCCEEE
Confidence            7899999998732          357889999999999997655443333333   4444555443

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.69  E-value=1.1e-16  Score=123.63  Aligned_cols=122  Identities=31%  Similarity=0.393  Sum_probs=96.2

Q ss_pred             CcccccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 026506           87 HRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV  166 (237)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~  166 (237)
                      ....+..|...+.+++.++++||++|||+|||+|+.+..++...++..+|+++|.++...+.|++++...+..+ +.+..
T Consensus        51 ~~~~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~n-v~~~~  129 (209)
T PF01135_consen   51 CGQTISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDN-VEVVV  129 (209)
T ss_dssp             TTEEE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHS-EEEEE
T ss_pred             ceeechHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCc-eeEEE
Confidence            34455567777789999999999999999999999999999998777789999999999999999999999877 99999


Q ss_pred             ccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          167 RDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       167 ~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +|.. ..++..  ..||.|++....+ +.-..+.+.|++||++++-.
T Consensus       130 gdg~-~g~~~~--apfD~I~v~~a~~-~ip~~l~~qL~~gGrLV~pi  172 (209)
T PF01135_consen  130 GDGS-EGWPEE--APFDRIIVTAAVP-EIPEALLEQLKPGGRLVAPI  172 (209)
T ss_dssp             S-GG-GTTGGG---SEEEEEESSBBS-S--HHHHHTEEEEEEEEEEE
T ss_pred             cchh-hccccC--CCcCEEEEeeccc-hHHHHHHHhcCCCcEEEEEE
Confidence            9987 445442  6899999876554 35577889999999998644

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.69  E-value=1.2e-15  Score=118.26  Aligned_cols=119  Identities=24%  Similarity=0.296  Sum_probs=100.2

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc-cCCC--CCCCCCCCCCE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI-QGQG--FPDEFSGLADS  184 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~--~~~~~~~~~D~  184 (237)
                      ++.+|||+|||+|..+..++... +..+++++|+++++++.+++++...+..+ +.+..+|+ ....  ++.   +.||+
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~l~~~~~~---~~~D~  114 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTN-LRLLCGDAVEVLLDMFPD---GSLDR  114 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCC-EEEEecCHHHHHHHHcCc---cccce
Confidence            67899999999999999998875 55789999999999999999998877755 99999998 4322  333   67999


Q ss_pred             EEEeCCCh-------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCc
Q 026506          185 IFLDLPQP-------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT  231 (237)
Q Consensus       185 v~~~~~~~-------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~  231 (237)
                      |+++.+.+             ..+++++.+.|+|||.+++..+.......+++.+++ ++.
T Consensus       115 V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~  175 (202)
T PRK00121        115 IYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGF  175 (202)
T ss_pred             EEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccc
Confidence            99876543             247999999999999999999988999999999988 654

>PLN02244 tocopherol O-methyltransferase

Probab=99.68  E-value=1.8e-15  Score=126.10  Aligned_cols=109  Identities=20%  Similarity=0.262  Sum_probs=92.0

Q ss_pred             HHHhcCC-----CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCC
Q 026506          100 VIMYLEL-----VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF  174 (237)
Q Consensus       100 ~~~~~~~-----~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~  174 (237)
                      ++..+.+     .++.+|||+|||+|.++..++...  ..+|+++|+++.+++.++++....+..+++++..+|+.+.++
T Consensus       105 ~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~  182 (340)
T PLN02244        105 SLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF  182 (340)
T ss_pred             HHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC
Confidence            4555555     678999999999999999998875  468999999999999999998888876669999999987666


Q ss_pred             CCCCCCCCCEEEE-----eCCChhchHHHHHhcccCCCEEEEEe
Q 026506          175 PDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       175 ~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +.   +.||+|+.     +.++...+++++.+.|||||++++..
T Consensus       183 ~~---~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~  223 (340)
T PLN02244        183 ED---GQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVT  223 (340)
T ss_pred             CC---CCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            65   78999986     34566779999999999999998764

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.68  E-value=1.2e-15  Score=119.33  Aligned_cols=135  Identities=21%  Similarity=0.183  Sum_probs=110.3

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      ++..+..+....+|||+|||.|.+++.++.+... .+++++|+++++.++|+++++.+++..++++++.|+.+..... .
T Consensus        35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~-~  112 (248)
T COG4123          35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL-V  112 (248)
T ss_pred             HHHhhcccccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc-c
Confidence            3555666677889999999999999999998644 8999999999999999999999999889999999998622211 1


Q ss_pred             CCCCCEEEEeCCCh-----------------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCcccc
Q 026506          179 SGLADSIFLDLPQP-----------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGKE  234 (237)
Q Consensus       179 ~~~~D~v~~~~~~~-----------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~  234 (237)
                      ..+||+|++|+|-.                       .++++.+.+.|||||.+.++-+ .+.+.++++.++. +|...+
T Consensus       113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r-~erl~ei~~~l~~~~~~~k~  191 (248)
T COG4123         113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR-PERLAEIIELLKSYNLEPKR  191 (248)
T ss_pred             ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec-HHHHHHHHHHHHhcCCCceE
Confidence            14699999998711                       2568889999999999997776 5678889999999 777665


Q ss_pred             cc
Q 026506          235 SC  236 (237)
Q Consensus       235 ~~  236 (237)
                      .|
T Consensus       192 i~  193 (248)
T COG4123         192 IQ  193 (248)
T ss_pred             EE
Confidence            54

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.67  E-value=2.1e-15  Score=116.27  Aligned_cols=133  Identities=17%  Similarity=0.209  Sum_probs=109.4

Q ss_pred             CCHHHHhhhcCCcccccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCC-----cEEEEEeCCHHHHHHHH
Q 026506           76 PTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPT-----GHVYTFDFHEQRAASAR  150 (237)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~-----~~v~~vD~~~~~~~~a~  150 (237)
                      +.++.+++.++.+.+.+|..   ..+..+++.+++++||++||||-.+..+++.....     .+|+++|+|+++++.++
T Consensus        71 ~~YD~mND~mSlGiHRlWKd---~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgk  147 (296)
T KOG1540|consen   71 KKYDIMNDAMSLGIHRLWKD---MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGK  147 (296)
T ss_pred             HHHHHHHHHhhcchhHHHHH---HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHH
Confidence            34556666666666666632   26788899999999999999999999999987432     79999999999999999


Q ss_pred             HHHHHcCCCCc--EEEEEccccCCCCCCCCCCCCCEEEE-----eCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          151 EDFERTGVSSF--VTVGVRDIQGQGFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       151 ~~~~~~~~~~~--i~~~~~d~~~~~~~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ++.++.++...  +.++.+|+++.++++   ..||...+     +.+++...+++++|+|||||++..+.-
T Consensus       148 qRa~~~~l~~~~~~~w~~~dAE~LpFdd---~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeF  215 (296)
T KOG1540|consen  148 QRAKKRPLKASSRVEWVEGDAEDLPFDD---DSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEF  215 (296)
T ss_pred             HHHhhcCCCcCCceEEEeCCcccCCCCC---CcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEc
Confidence            99877776544  889999999988887   78998754     677888999999999999999986653

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.67  E-value=1.9e-15  Score=122.57  Aligned_cols=130  Identities=26%  Similarity=0.312  Sum_probs=102.4

Q ss_pred             HhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCC
Q 026506          102 MYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL  181 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  181 (237)
                      ....+.++++|||+|||+|..+..++...++..+++++|+++.+++.|+++....+..+ +++..+|+.+.+++.   +.
T Consensus        71 ~~~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~-v~~~~~d~~~l~~~~---~~  146 (272)
T PRK11873         71 ALAELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTN-VEFRLGEIEALPVAD---NS  146 (272)
T ss_pred             hhccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCC-EEEEEcchhhCCCCC---Cc
Confidence            34567899999999999999888888777666789999999999999999998888765 889999987645544   68


Q ss_pred             CCEEEEeC-----CChhchHHHHHhcccCCCEEEEEeCCH----------------------HHHHHHHHHHHh-cCccc
Q 026506          182 ADSIFLDL-----PQPWLAIPSAKKMLKQDGILCSFSPCI----------------------EQVQRSCESLRL-NFTGK  233 (237)
Q Consensus       182 ~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~~----------------------~~~~~~~~~l~~-~f~~v  233 (237)
                      ||+|+.+.     ++...+++++.+.|||||++++.....                      .+..++.+.+++ +|..+
T Consensus       147 fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v  226 (272)
T PRK11873        147 VDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDI  226 (272)
T ss_pred             eeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCce
Confidence            99998654     355678999999999999999753210                      123466777777 78766


Q ss_pred             cc
Q 026506          234 ES  235 (237)
Q Consensus       234 ~~  235 (237)
                      ++
T Consensus       227 ~i  228 (272)
T PRK11873        227 TI  228 (272)
T ss_pred             EE
Confidence            54

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.66  E-value=1e-14  Score=112.66  Aligned_cols=126  Identities=21%  Similarity=0.323  Sum_probs=100.9

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .++..+.+.++.+|||+|||+|.++..++... +..+++++|+++++++.++++++.++..+ +++..+|+.+ .+.. .
T Consensus        31 ~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~-v~~~~~d~~~-~~~~-~  106 (196)
T PRK07402         31 LLISQLRLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKN-VEVIEGSAPE-CLAQ-L  106 (196)
T ss_pred             HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCC-eEEEECchHH-HHhh-C
Confidence            36777788899999999999999999888664 45799999999999999999999888765 8999998853 1111 1


Q ss_pred             CCCCCEEEEeCCCh-hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh
Q 026506          179 SGLADSIFLDLPQP-WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL  228 (237)
Q Consensus       179 ~~~~D~v~~~~~~~-~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~  228 (237)
                      ...+|.++++.... ..+++.+.+.|+|||++++..+..++.....+.+++
T Consensus       107 ~~~~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~  157 (196)
T PRK07402        107 APAPDRVCIEGGRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQ  157 (196)
T ss_pred             CCCCCEEEEECCcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHh
Confidence            13468888776543 468999999999999999998888777777777765

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.66  E-value=2.1e-15  Score=121.45  Aligned_cols=133  Identities=28%  Similarity=0.324  Sum_probs=101.7

Q ss_pred             cccccccHHH--HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q 026506           90 QILYIADISF--VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR  167 (237)
Q Consensus        90 ~~~~~~~~~~--~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~  167 (237)
                      ..++.++.+.  ....+++++|.+|||+|||+|+.+.+++..++..+.|+++|+++.+++.++++++++++.+ +.+...
T Consensus        51 G~~~~qd~~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~-v~~~~~  129 (264)
T TIGR00446        51 GLYYIQEASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN-VAVTNF  129 (264)
T ss_pred             CeEEEECHHHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEecC
Confidence            3344444443  3356788999999999999999999999987666799999999999999999999999876 889988


Q ss_pred             cccCCCCCCCCCCCCCEEEEeCCCh---------------------------hchHHHHHhcccCCCEEEEEeCCH---H
Q 026506          168 DIQGQGFPDEFSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPCI---E  217 (237)
Q Consensus       168 d~~~~~~~~~~~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~gG~l~~~~~~~---~  217 (237)
                      |........   +.||.|++|+|+.                           .++|+.+.+.|||||+|+ |++|.   .
T Consensus       130 D~~~~~~~~---~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lv-Ystcs~~~~  205 (264)
T TIGR00446       130 DGRVFGAAV---PKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLV-YSTCSLEPE  205 (264)
T ss_pred             CHHHhhhhc---cCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE-EEeCCCChH
Confidence            876422222   5699999998743                           137888999999999997 77664   3


Q ss_pred             HHHHHHHHHH
Q 026506          218 QVQRSCESLR  227 (237)
Q Consensus       218 ~~~~~~~~l~  227 (237)
                      ..+...+.+-
T Consensus       206 Ene~vv~~~l  215 (264)
T TIGR00446       206 ENEAVVDYLL  215 (264)
T ss_pred             HHHHHHHHHH
Confidence            3344444443

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.65  E-value=2.5e-15  Score=115.77  Aligned_cols=121  Identities=22%  Similarity=0.388  Sum_probs=101.7

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC---CCCCCCCCCC
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG---FPDEFSGLAD  183 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~~~~D  183 (237)
                      ....++||+|||+|.++..++... +..+++++|+++.+++.|++++...++.+ +.+..+|+.+..   ++.   +.+|
T Consensus        15 ~~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~n-i~~i~~d~~~~~~~~~~~---~~~d   89 (194)
T TIGR00091        15 NKAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKN-LHVLCGDANELLDKFFPD---GSLS   89 (194)
T ss_pred             CCCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCC-EEEEccCHHHHHHhhCCC---Ccee
Confidence            345699999999999999999875 66899999999999999999998888775 999999986411   222   5799


Q ss_pred             EEEEeCCChh-------------chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-c-Ccc
Q 026506          184 SIFLDLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-N-FTG  232 (237)
Q Consensus       184 ~v~~~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~-f~~  232 (237)
                      .|+++.|++|             .+++.+.+.|||||.+++........+.+++.+.+ + |..
T Consensus        90 ~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~  153 (194)
T TIGR00091        90 KVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN  153 (194)
T ss_pred             EEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence            9999988764             47899999999999999998888888888888887 3 654

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.64  E-value=5e-15  Score=109.74  Aligned_cols=106  Identities=25%  Similarity=0.390  Sum_probs=88.5

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      +.+.+|||+|||+|.++..++....+..+++++|+++++++.|+++++..+.++ +++.++|+.+  ++....+.||+|+
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~n-i~~~~~d~~~--l~~~~~~~~D~I~   78 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDN-IEFIQGDIED--LPQELEEKFDIII   78 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTT-EEEEESBTTC--GCGCSSTTEEEEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccc-cceEEeehhc--cccccCCCeeEEE
Confidence            467899999999999999999766667899999999999999999999889885 9999999986  4321115799999


Q ss_pred             EeC-----CChhchHHHHHhcccCCCEEEEEeCC
Q 026506          187 LDL-----PQPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       187 ~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      .+.     .++..+++++.+.|+++|++++..+.
T Consensus        79 ~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   79 SNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             EESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            864     34456899999999999999988776

...

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.64  E-value=1e-14  Score=111.11  Aligned_cols=119  Identities=22%  Similarity=0.119  Sum_probs=94.0

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ++++.+|||+|||+|..+..++... +..+|+++|+++.+++.|+++.+..+.++ +++..+|+.+... .   ++||+|
T Consensus        43 l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~-~---~~fDlV  116 (187)
T PRK00107         43 LPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ-E---EKFDVV  116 (187)
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC-C---CCccEE
Confidence            3458999999999999999988864 56899999999999999999999998877 9999999875322 2   689999


Q ss_pred             EEeCC-ChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCc
Q 026506          186 FLDLP-QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT  231 (237)
Q Consensus       186 ~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~  231 (237)
                      +++.- ....+++.+.+.|+|||+++++.... ...++.+..+. |+.
T Consensus       117 ~~~~~~~~~~~l~~~~~~LkpGG~lv~~~~~~-~~~~l~~~~~~~~~~  163 (187)
T PRK00107        117 TSRAVASLSDLVELCLPLLKPGGRFLALKGRD-PEEEIAELPKALGGK  163 (187)
T ss_pred             EEccccCHHHHHHHHHHhcCCCeEEEEEeCCC-hHHHHHHHHHhcCce
Confidence            98643 34568999999999999999886543 34444444443 544

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=99.64  E-value=1.7e-15  Score=126.79  Aligned_cols=189  Identities=21%  Similarity=0.216  Sum_probs=121.5

Q ss_pred             CCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEe--ccCcEE-EEECCCHHHHhhh-----
Q 026506           13 TRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFS--NKGGFV-YLLAPTPELWTLV-----   84 (237)
Q Consensus        13 ~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~--~~~~~~-~~~~~~~~~~~~~-----   84 (237)
                      .+.+|+||||++.+..+        ||.|.+|+.|.+++|+..+ -+|.....  ..|+|. |+..|. +.....     
T Consensus        73 ~~~~~~GdrVvv~~~~~--------Cg~C~~C~~G~~~~C~~~~-~~g~~~~~~~~~G~~aEyv~vp~-~~~~~~~pd~~  142 (350)
T COG1063          73 VRGFKVGDRVVVEPNIP--------CGHCRYCRAGEYNLCENPG-FYGYAGLGGGIDGGFAEYVRVPA-DFNLAKLPDGI  142 (350)
T ss_pred             ccCCCCCCEEEECCCcC--------CCCChhHhCcCcccCCCcc-ccccccccCCCCCceEEEEEecc-ccCeecCCCCC
Confidence            35699999999999777        9999999999999998221 12222111  346666 555554 211111     


Q ss_pred             cCCcccccccccHHH--HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 026506           85 LSHRTQILYIADISF--VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSF  161 (237)
Q Consensus        85 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~  161 (237)
                      ......+..|...+.  ........++.+|+.+|||+ |.++.++++.. +..+|+++|.++++++.|++..   +.+. 
T Consensus       143 ~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~~~~---g~~~-  217 (350)
T COG1063         143 DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSPERLELAKEAG---GADV-  217 (350)
T ss_pred             ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHHhC---CCeE-
Confidence            112334445555542  23333445566999999999 77777777776 4589999999999999999852   2221 


Q ss_pred             EEEEEc-cccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCCHH
Q 026506          162 VTVGVR-DIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIE  217 (237)
Q Consensus       162 i~~~~~-d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  217 (237)
                      +..... +..........+.++|++|.....+ .+++.+.+++++||++++++....
T Consensus       218 ~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~-~~~~~ai~~~r~gG~v~~vGv~~~  273 (350)
T COG1063         218 VVNPSEDDAGAEILELTGGRGADVVIEAVGSP-PALDQALEALRPGGTVVVVGVYGG  273 (350)
T ss_pred             eecCccccHHHHHHHHhCCCCCCEEEECCCCH-HHHHHHHHHhcCCCEEEEEeccCC
Confidence            211111 1111111111123799998877744 489999999999999998876543

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.63  E-value=4.7e-15  Score=126.99  Aligned_cols=113  Identities=26%  Similarity=0.451  Sum_probs=94.2

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      +...+++.+|.+|||+|||+|+.+.+++..+++.++|+++|+++.+++.+++++++.|+.+ +++...|+..  ++....
T Consensus       229 ~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~-v~~~~~Da~~--l~~~~~  305 (431)
T PRK14903        229 VPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IEIKIADAER--LTEYVQ  305 (431)
T ss_pred             HHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhh--hhhhhh
Confidence            4456788999999999999999999999988767899999999999999999999999876 8899999864  221112


Q ss_pred             CCCCEEEEeCCCh---------------------------hchHHHHHhcccCCCEEEEEeCCH
Q 026506          180 GLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       180 ~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                      +.||.|++|+|+.                           .+.+.++.+.|||||+++ |++|.
T Consensus       306 ~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~Lv-YsTCs  368 (431)
T PRK14903        306 DTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILL-YSTCT  368 (431)
T ss_pred             ccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE-EEECC
Confidence            6799999998852                           245889999999999976 77665

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=6.8e-15  Score=118.00  Aligned_cols=124  Identities=27%  Similarity=0.296  Sum_probs=98.1

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      .++|.++||+|||||-++++.+..  +..+++++|++|.+++.+++|+..+++...++....+...  .+.  .+.||+|
T Consensus       160 ~~~g~~vlDvGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~--~~~--~~~~DvI  233 (300)
T COG2264         160 LKKGKTVLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLE--VPE--NGPFDVI  233 (300)
T ss_pred             hcCCCEEEEecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchh--hcc--cCcccEE
Confidence            458999999999999999887766  5578999999999999999999999977523333333321  222  1589999


Q ss_pred             EEeCCCh--hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCccccc
Q 026506          186 FLDLPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGKES  235 (237)
Q Consensus       186 ~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~~  235 (237)
                      +.|.-..  ..+...+.+.++|||++++.+...++.+.+.+.+.+ +|.-+++
T Consensus       234 VANILA~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~  286 (300)
T COG2264         234 VANILAEVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEV  286 (300)
T ss_pred             EehhhHHHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEE
Confidence            9997432  257888999999999999999888999999999966 8875543

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=99.62  E-value=1.5e-14  Score=124.22  Aligned_cols=136  Identities=28%  Similarity=0.364  Sum_probs=108.5

Q ss_pred             ccccccccHHH--HHHhc--CCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE
Q 026506           89 TQILYIADISF--VIMYL--ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV  164 (237)
Q Consensus        89 ~~~~~~~~~~~--~~~~~--~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~  164 (237)
                      ...++.++.+.  ....+  ++.+|++|||+++|+|+-+.+++..++..+.++++|+++.+++.+++++++.|+.+ +.+
T Consensus        90 ~G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n-v~v  168 (470)
T PRK11933         90 SGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN-VAL  168 (470)
T ss_pred             CCcEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEE
Confidence            44455555543  33556  78999999999999999999999998777899999999999999999999999977 888


Q ss_pred             EEccccCCCCCCCCCCCCCEEEEeCCCh---------------------------hchHHHHHhcccCCCEEEEEeCCH-
Q 026506          165 GVRDIQGQGFPDEFSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPCI-  216 (237)
Q Consensus       165 ~~~d~~~~~~~~~~~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~gG~l~~~~~~~-  216 (237)
                      ...|...  +.......||.|++|+|+.                           .+.|..+.+.|||||+|+ |++|+ 
T Consensus       169 ~~~D~~~--~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LV-YSTCT~  245 (470)
T PRK11933        169 THFDGRV--FGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLV-YSTCTL  245 (470)
T ss_pred             EeCchhh--hhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEE-EECCCC
Confidence            8888764  2211225799999999855                           257889999999999985 99997 


Q ss_pred             --HHHHHHHHHHHh
Q 026506          217 --EQVQRSCESLRL  228 (237)
Q Consensus       217 --~~~~~~~~~l~~  228 (237)
                        ++.+...+.+-+
T Consensus       246 ~~eENE~vV~~~L~  259 (470)
T PRK11933        246 NREENQAVCLWLKE  259 (470)
T ss_pred             CHHHHHHHHHHHHH
Confidence              666776665544

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.62  E-value=1.3e-14  Score=110.34  Aligned_cols=123  Identities=20%  Similarity=0.184  Sum_probs=98.1

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      +...+...++.+|||+|||+|.++..++...   .+++++|+++.+++.+++++..++. + +++..+|+.+  ...   
T Consensus        11 l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-~-~~~~~~d~~~--~~~---   80 (179)
T TIGR00537        11 LEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV-G-LDVVMTDLFK--GVR---   80 (179)
T ss_pred             HHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC-c-eEEEEccccc--ccC---
Confidence            4455556677899999999999999888762   3899999999999999999987764 3 7888888764  222   


Q ss_pred             CCCCEEEEeCCCh--------------------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCcc
Q 026506          180 GLADSIFLDLPQP--------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTG  232 (237)
Q Consensus       180 ~~~D~v~~~~~~~--------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~  232 (237)
                      +.||+|+.++|-.                          ..+++++.+.|+|||+++++.+...+..++.+.+++ +|..
T Consensus        81 ~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~  160 (179)
T TIGR00537        81 GKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRY  160 (179)
T ss_pred             CcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeE
Confidence            5799999886521                          235888999999999999888777768888888888 7753

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.62  E-value=1.4e-14  Score=110.08  Aligned_cols=118  Identities=17%  Similarity=0.214  Sum_probs=90.0

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL  187 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~  187 (237)
                      ++.+|||+|||+|.++..++.. .+..+|+++|.++++++.++++.+..+..+ +++..+|+.+  +..  .+.||+|++
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~~~--~~~--~~~fD~I~s  115 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRAED--FQH--EEQFDVITS  115 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecchhh--ccc--cCCccEEEe
Confidence            4889999999999999888765 456789999999999999999998888766 9999999875  222  268999998


Q ss_pred             eC-CChhchHHHHHhcccCCCEEEEEeCCH--HHHHHHHHHHHh-cCc
Q 026506          188 DL-PQPWLAIPSAKKMLKQDGILCSFSPCI--EQVQRSCESLRL-NFT  231 (237)
Q Consensus       188 ~~-~~~~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~l~~-~f~  231 (237)
                      +. ......++.+.+.|+|||++++.....  ..+....+.+.. +|.
T Consensus       116 ~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~  163 (181)
T TIGR00138       116 RALASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVE  163 (181)
T ss_pred             hhhhCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCce
Confidence            75 233457888999999999998775432  223344344333 554

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.62  E-value=1.2e-14  Score=124.96  Aligned_cols=116  Identities=25%  Similarity=0.407  Sum_probs=94.3

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCC-CC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP-DE  177 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~  177 (237)
                      .+...+.+.+|++|||+|||+|+.+.+++..+++.++++++|+++.+++.+++++.++|+.+ +.+...|+.+.... ..
T Consensus       243 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~  321 (434)
T PRK14901        243 LVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLELKPQ  321 (434)
T ss_pred             HHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhccccccc
Confidence            35556788999999999999999999999987666799999999999999999999999877 89999998752200 01


Q ss_pred             CCCCCCEEEEeCCCh---------------------------hchHHHHHhcccCCCEEEEEeCCH
Q 026506          178 FSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       178 ~~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                      ..+.||.|++|+|+.                           .+.++++.+.|||||+++ |++|.
T Consensus       322 ~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lv-ystcs  386 (434)
T PRK14901        322 WRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLV-YATCT  386 (434)
T ss_pred             ccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE-EEeCC
Confidence            125799999998742                           246899999999999998 55543

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=99.61  E-value=8.5e-15  Score=119.51  Aligned_cols=177  Identities=19%  Similarity=0.223  Sum_probs=121.3

Q ss_pred             cCCCCCCCCEEEE-EEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCcc
Q 026506           12 FTRCIKEGDLVIV-YERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHRT   89 (237)
Q Consensus        12 ~~~~~~~Gd~V~i-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   89 (237)
                      -.+.||+||||.+ ....+        ||+|.+|+.|.-+.|+. .+..|.   +.+|+|. |...+.  .+...++...
T Consensus        75 ~V~~~k~GDrVgV~~~~~~--------Cg~C~~C~~G~E~~C~~-~~~~gy---~~~GGyaeyv~v~~--~~~~~iP~~~  140 (339)
T COG1064          75 GVTGLKVGDRVGVGWLVIS--------CGECEYCRSGNENLCPN-QKITGY---TTDGGYAEYVVVPA--RYVVKIPEGL  140 (339)
T ss_pred             CCccCCCCCEEEecCccCC--------CCCCccccCcccccCCC-ccccce---eecCcceeEEEEch--HHeEECCCCC
Confidence            3457999999999 66667        99999999999888874 233333   3567777 555542  2323333321


Q ss_pred             cccc--cccHH-----HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 026506           90 QILY--IADIS-----FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSF  161 (237)
Q Consensus        90 ~~~~--~~~~~-----~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~  161 (237)
                      ....  |...+     ..+...+.+||++|+..|+|. |.+++++++.++  .+|+++|.+++..+.|++    +|.+..
T Consensus       141 d~~~aApllCaGiT~y~alk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~----lGAd~~  214 (339)
T COG1064         141 DLAEAAPLLCAGITTYRALKKANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKK----LGADHV  214 (339)
T ss_pred             ChhhhhhhhcCeeeEeeehhhcCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHH----hCCcEE
Confidence            1111  11000     144567889999999999996 788899999874  899999999999999998    465543


Q ss_pred             EEEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCC
Q 026506          162 VTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       162 i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      ++....|.. ....    +.+|+|+...+  ...++...+.|++||++++++-.
T Consensus       215 i~~~~~~~~-~~~~----~~~d~ii~tv~--~~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         215 INSSDSDAL-EAVK----EIADAIIDTVG--PATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             EEcCCchhh-HHhH----hhCcEEEECCC--hhhHHHHHHHHhcCCEEEEECCC
Confidence            332222222 1111    34999887776  45899999999999999987643

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.60  E-value=3.9e-14  Score=115.53  Aligned_cols=122  Identities=24%  Similarity=0.251  Sum_probs=97.5

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..++.+|||+|||+|.++..++..  +..+++++|+++.+++.|++++..+++...+.+...+...  ...   ++||+|
T Consensus       157 ~~~g~~VLDvGcGsG~lai~aa~~--g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~~~---~~fDlV  229 (288)
T TIGR00406       157 DLKDKNVIDVGCGSGILSIAALKL--GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--PIE---GKADVI  229 (288)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--ccC---CCceEE
Confidence            457899999999999999777654  3468999999999999999999988877656666665321  222   689999


Q ss_pred             EEeCCCh--hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHhcCcccc
Q 026506          186 FLDLPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGKE  234 (237)
Q Consensus       186 ~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~v~  234 (237)
                      +.+....  ..++..+.+.|+|||.+++......+..++.+.++++|.-++
T Consensus       230 van~~~~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~f~~~~  280 (288)
T TIGR00406       230 VANILAEVIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQGFTVVE  280 (288)
T ss_pred             EEecCHHHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHccCceee
Confidence            9886533  357889999999999999888888888888888877776544

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.60  E-value=1.3e-14  Score=115.94  Aligned_cols=103  Identities=18%  Similarity=0.195  Sum_probs=83.6

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      +.++.+|||+|||+|..+..++..+ .+..+++++|+|+.+++.|++++...+...++++..+|+.+.  +.   ..+|+
T Consensus        54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~--~~---~~~D~  128 (247)
T PRK15451         54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI--AI---ENASM  128 (247)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC--CC---CCCCE
Confidence            4578899999999999998888753 356899999999999999999998877766699999998753  32   45898


Q ss_pred             EEEeCC-------ChhchHHHHHhcccCCCEEEEEe
Q 026506          185 IFLDLP-------QPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       185 v~~~~~-------~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      |+++..       ....+++++.+.|||||.+++..
T Consensus       129 vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e  164 (247)
T PRK15451        129 VVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE  164 (247)
T ss_pred             EehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            875421       22468999999999999998764

>PRK14967 putative methyltransferase; Provisional

Probab=99.59  E-value=4.4e-14  Score=111.23  Aligned_cols=123  Identities=26%  Similarity=0.236  Sum_probs=95.3

Q ss_pred             HHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506          101 IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG  180 (237)
Q Consensus       101 ~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  180 (237)
                      +..+.+.++.+|||+|||+|.++..++..  +..+++++|+++.+++.+++++..++. + +.+..+|+.+ .++.   +
T Consensus        29 l~~~~~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~-~-~~~~~~d~~~-~~~~---~  100 (223)
T PRK14967         29 LAAEGLGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAGV-D-VDVRRGDWAR-AVEF---R  100 (223)
T ss_pred             HHhcccCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhCC-e-eEEEECchhh-hccC---C
Confidence            34445678899999999999999888765  335899999999999999999887775 3 7788888864 3333   6


Q ss_pred             CCCEEEEeCCCh--------------------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCc
Q 026506          181 LADSIFLDLPQP--------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT  231 (237)
Q Consensus       181 ~~D~v~~~~~~~--------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~  231 (237)
                      .||+|++++|-.                          ..+++++.+.|+|||+++++.+...+..++++.++. +|.
T Consensus       101 ~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~  178 (223)
T PRK14967        101 PFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLD  178 (223)
T ss_pred             CeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCC
Confidence            799999986521                          125677899999999999876665566778888877 553

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.59  E-value=3.4e-14  Score=114.11  Aligned_cols=107  Identities=21%  Similarity=0.226  Sum_probs=86.7

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC-CCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GFPDEF  178 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~  178 (237)
                      ++..+. .++.+|||+|||+|.++..++..   ..+|+++|+++++++.|+++....++.+++++..+|+.+. ....  
T Consensus        37 ~l~~l~-~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~--  110 (255)
T PRK11036         37 LLAELP-PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLE--  110 (255)
T ss_pred             HHHhcC-CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcC--
Confidence            445554 45689999999999999998876   3689999999999999999998888766689999988652 1233  


Q ss_pred             CCCCCEEEEe-----CCChhchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                       +.||+|+++     ..++..+++++.+.|||||++++..
T Consensus       111 -~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~  149 (255)
T PRK11036        111 -TPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMF  149 (255)
T ss_pred             -CCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEE
Confidence             689999864     3466788999999999999997654

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.59  E-value=4.1e-14  Score=122.12  Aligned_cols=114  Identities=28%  Similarity=0.440  Sum_probs=93.8

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .+...+.+.++.+|||+|||+|..+..++...++.++++++|+++.+++.++++++.+++.+ +++..+|+.+.  ....
T Consensus       241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~--~~~~  317 (444)
T PRK14902        241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARKV--HEKF  317 (444)
T ss_pred             HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcccc--cchh
Confidence            34557788899999999999999999999987666899999999999999999999999877 99999998752  1111


Q ss_pred             CCCCCEEEEeCCCh---------------------------hchHHHHHhcccCCCEEEEEeCCH
Q 026506          179 SGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       179 ~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                      .+.||+|++|+|+.                           .++++.+.+.|||||+++ |++|.
T Consensus       318 ~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lv-ystcs  381 (444)
T PRK14902        318 AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILV-YSTCT  381 (444)
T ss_pred             cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEE-EEcCC
Confidence            15799999998732                           246888999999999998 66554

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.59  E-value=3.3e-14  Score=113.49  Aligned_cols=185  Identities=16%  Similarity=0.117  Sum_probs=125.3

Q ss_pred             ccCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEEEEECCCHHHHhhhcC----
Q 026506           11 SFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLS----   86 (237)
Q Consensus        11 ~~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----   86 (237)
                      +-...+|+||||++.+..+        |+.|..|+.|.++.|.-+.-.  . .....|.+..+... ++++-..+|    
T Consensus        78 ~~Vk~LkVGDrVaiEpg~~--------c~~cd~CK~GrYNlCp~m~f~--a-tpp~~G~la~y~~~-~~dfc~KLPd~vs  145 (354)
T KOG0024|consen   78 DEVKHLKVGDRVAIEPGLP--------CRDCDFCKEGRYNLCPHMVFC--A-TPPVDGTLAEYYVH-PADFCYKLPDNVS  145 (354)
T ss_pred             ccccccccCCeEEecCCCc--------cccchhhhCcccccCCccccc--c-CCCcCCceEEEEEe-chHheeeCCCCCc
Confidence            4567799999999999887        888999999999999744321  1 11234555533333 222222222    


Q ss_pred             -CcccccccccHHH-HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 026506           87 -HRTQILYIADISF-VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT  163 (237)
Q Consensus        87 -~~~~~~~~~~~~~-~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~  163 (237)
                       ...+++.|..++. ...+..+++|.+||.+|+|+ |.++...|+.++ ..+|+.+|.++++++.|++    .|.+....
T Consensus       146 ~eeGAl~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~----~Ga~~~~~  220 (354)
T KOG0024|consen  146 FEEGALIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK----FGATVTDP  220 (354)
T ss_pred             hhhcccccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH----hCCeEEee
Confidence             4567778877664 66778899999999999999 777888888874 5899999999999999998    46554222


Q ss_pred             EEEccccC---CCCCCC-CCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          164 VGVRDIQG---QGFPDE-FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       164 ~~~~d~~~---~~~~~~-~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ....+..+   ...... ....+|+.|.+.... ..++.+...++.||.+++..
T Consensus       221 ~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~-~~~~aai~a~r~gGt~vlvg  273 (354)
T KOG0024|consen  221 SSHKSSPQELAELVEKALGKKQPDVTFDCSGAE-VTIRAAIKATRSGGTVVLVG  273 (354)
T ss_pred             ccccccHHHHHHHHHhhccccCCCeEEEccCch-HHHHHHHHHhccCCEEEEec
Confidence            22222000   001111 113589977655443 48899999999999977553

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.59  E-value=1e-13  Score=98.84  Aligned_cols=110  Identities=25%  Similarity=0.342  Sum_probs=87.8

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ++..+.+.++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++...+..+ +++...|+... .+. ..
T Consensus        11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~-~~~-~~   86 (124)
T TIGR02469        11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGVSN-IVIVEGDAPEA-LED-SL   86 (124)
T ss_pred             HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCCCc-eEEEecccccc-Chh-hc
Confidence            5666677788899999999999999999886 44799999999999999999998887765 88888887531 111 11


Q ss_pred             CCCCEEEEeCC--ChhchHHHHHhcccCCCEEEEEe
Q 026506          180 GLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       180 ~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ..||.|+.+..  ...++++.+.+.|+|||.+++..
T Consensus        87 ~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        87 PEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             CCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence            57999998653  33468999999999999998643

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.59  E-value=3.1e-14  Score=113.63  Aligned_cols=127  Identities=24%  Similarity=0.260  Sum_probs=100.7

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .+++.+....+.+|||+|||.|.+++.+++.. |..+++.+|.|..+++.+++|+..++.++. .+...|.. .+..   
T Consensus       149 lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~-~~v~---  222 (300)
T COG2813         149 LLLETLPPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLY-EPVE---  222 (300)
T ss_pred             HHHHhCCccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEeccc-cccc---
Confidence            47777877777799999999999999999985 678999999999999999999999988774 66777765 2333   


Q ss_pred             CCCCCEEEEeCCCh----------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHhcCccccc
Q 026506          179 SGLADSIFLDLPQP----------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGKES  235 (237)
Q Consensus       179 ~~~~D~v~~~~~~~----------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~v~~  235 (237)
                       ++||+|+.|+|-+          |+.++.+.+.|++||.|.++.-.   .......|++.|.++++
T Consensus       223 -~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~---~l~y~~~L~~~Fg~v~~  285 (300)
T COG2813         223 -GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANR---HLPYEKKLKELFGNVEV  285 (300)
T ss_pred             -ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcC---CCChHHHHHHhcCCEEE
Confidence             5799999999833          47899999999999999877652   22333455555666554

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.58  E-value=4.4e-14  Score=112.45  Aligned_cols=109  Identities=23%  Similarity=0.248  Sum_probs=92.9

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .+++.++++||++|||||||.|.+++.+++..  +.+|+++++|++..+.+++++...|+..++++...|..+  +.   
T Consensus        63 ~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd--~~---  135 (283)
T COG2230          63 LILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD--FE---  135 (283)
T ss_pred             HHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc--cc---
Confidence            47788899999999999999999999999986  489999999999999999999999998779999998864  44   


Q ss_pred             CCCCCEEEE-----eCC--ChhchHHHHHhcccCCCEEEEEeCC
Q 026506          179 SGLADSIFL-----DLP--QPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       179 ~~~~D~v~~-----~~~--~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                       +.||.|+.     ...  ....+++.+.+.|+|||++++.+..
T Consensus       136 -e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~  178 (283)
T COG2230         136 -EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSIT  178 (283)
T ss_pred             -cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEec
Confidence             45999874     222  3457899999999999999866543

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.58  E-value=4.9e-14  Score=121.58  Aligned_cols=112  Identities=23%  Similarity=0.379  Sum_probs=92.9

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .....+.+.+|++|||+|||+|+.+.+++..++..++|+++|+++.+++.+++++...|+.+ +++..+|+.... +.  
T Consensus       241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~-v~~~~~Da~~~~-~~--  316 (445)
T PRK14904        241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITI-IETIEGDARSFS-PE--  316 (445)
T ss_pred             HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCe-EEEEeCcccccc-cC--
Confidence            45567788899999999999999999999887666799999999999999999999998865 899999987422 22  


Q ss_pred             CCCCCEEEEeCCCh---------------------------hchHHHHHhcccCCCEEEEEeCCH
Q 026506          179 SGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       179 ~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                       ..||+|++|+|+.                           ..++..+.+.|+|||+++ |++|.
T Consensus       317 -~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lv-ystcs  379 (445)
T PRK14904        317 -EQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLV-YATCS  379 (445)
T ss_pred             -CCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEE-EEeCC
Confidence             5799999997742                           136889999999999998 55543

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.58  E-value=4e-14  Score=118.43  Aligned_cols=110  Identities=19%  Similarity=0.230  Sum_probs=89.0

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC--CcEEEEEccccCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS--SFVTVGVRDIQGQGFPD  176 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~i~~~~~d~~~~~~~~  176 (237)
                      .+++.+....+.+|||+|||+|.++..++... +..+|+++|.|+.+++.++++++.++..  .++++...|... .++.
T Consensus       219 llL~~lp~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-~~~~  296 (378)
T PRK15001        219 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEP  296 (378)
T ss_pred             HHHHhCCcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-cCCC
Confidence            46677766656799999999999999998874 6689999999999999999999877643  247888888763 3333


Q ss_pred             CCCCCCCEEEEeCCCh----------hchHHHHHhcccCCCEEEEEe
Q 026506          177 EFSGLADSIFLDLPQP----------WLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       177 ~~~~~~D~v~~~~~~~----------~~~l~~~~~~L~~gG~l~~~~  213 (237)
                         .+||+|++|+|-.          ++++..+.+.|+|||.++++.
T Consensus       297 ---~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~  340 (378)
T PRK15001        297 ---FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  340 (378)
T ss_pred             ---CCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence               5799999998732          467899999999999998775

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.58  E-value=4.7e-14  Score=113.58  Aligned_cols=108  Identities=23%  Similarity=0.262  Sum_probs=87.9

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .++..+.+.++.+|||+|||+|..+..++...  ..+|+++|+++.+++.|+++...   .+++.+...|+.+.+++.  
T Consensus        43 ~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~--  115 (263)
T PTZ00098         43 KILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPE--  115 (263)
T ss_pred             HHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCC--
Confidence            47777888999999999999999998887653  36899999999999999987543   244889999987655655  


Q ss_pred             CCCCCEEEEe-----CC--ChhchHHHHHhcccCCCEEEEEeC
Q 026506          179 SGLADSIFLD-----LP--QPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       179 ~~~~D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                       +.||+|+..     .+  +...+++++.+.|||||++++...
T Consensus       116 -~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~  157 (263)
T PTZ00098        116 -NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY  157 (263)
T ss_pred             -CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence             789999862     22  445789999999999999997653

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.57  E-value=1.2e-13  Score=107.84  Aligned_cols=116  Identities=28%  Similarity=0.314  Sum_probs=93.4

Q ss_pred             ccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 026506           91 ILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ  170 (237)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~  170 (237)
                      +..|.....++..+.+.++.+|||+|||+|..+..++...   .+++++|+++++++.+++++...++.+ +++..+|..
T Consensus        61 ~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~  136 (212)
T PRK00312         61 ISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGW  136 (212)
T ss_pred             eCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcc
Confidence            3445555567788888999999999999999998777663   489999999999999999999888876 999999986


Q ss_pred             CCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          171 GQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       171 ~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      + .++..  +.||+|+++..... ..+.+.+.|+|||++++...
T Consensus       137 ~-~~~~~--~~fD~I~~~~~~~~-~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        137 K-GWPAY--APFDRILVTAAAPE-IPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             c-CCCcC--CCcCEEEEccCchh-hhHHHHHhcCCCcEEEEEEc
Confidence            3 33321  67999998865443 57888999999999986654

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.57  E-value=3.1e-14  Score=109.76  Aligned_cols=122  Identities=22%  Similarity=0.257  Sum_probs=99.4

Q ss_pred             cccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-cc
Q 026506           90 QILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV-RD  168 (237)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~-~d  168 (237)
                      .++.+....++...+...++.+|||+|++.|+.++.++..++.+++++++|+++++.+.|++++++.|+.+++.... +|
T Consensus        41 pi~~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gd  120 (219)
T COG4122          41 PIIDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGD  120 (219)
T ss_pred             CCCChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCc
Confidence            33335555555566677788999999999999999999998767899999999999999999999999998888888 57


Q ss_pred             ccCCCCCCCCCCCCCEEEEeCC--ChhchHHHHHhcccCCCEEEEE
Q 026506          169 IQGQGFPDEFSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       169 ~~~~~~~~~~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                      ..+ .+.....+.||+||+|..  ....+++.+.++|+|||.+++-
T Consensus       121 al~-~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~D  165 (219)
T COG4122         121 ALD-VLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVAD  165 (219)
T ss_pred             HHH-HHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEe
Confidence            765 222122378999999875  4557999999999999999854

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.57  E-value=4.1e-14  Score=113.98  Aligned_cols=107  Identities=28%  Similarity=0.348  Sum_probs=82.6

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .+++.++++||++|||||||.|+++..+++..  +++|+++.+|++..+.+++++...|+.+.+++...|..+  ++   
T Consensus        53 ~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~--~~---  125 (273)
T PF02353_consen   53 LLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD--LP---  125 (273)
T ss_dssp             HHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-------
T ss_pred             HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc--cC---
Confidence            46778899999999999999999999999986  379999999999999999999999998889999999875  33   


Q ss_pred             CCCCCEEEE-----eCC--ChhchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFL-----DLP--QPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~-----~~~--~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                       .+||.|+.     +.+  ....+++.+.+.|+|||++++-.
T Consensus       126 -~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~  166 (273)
T PF02353_consen  126 -GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT  166 (273)
T ss_dssp             --S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred             -CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence             47999874     232  23468999999999999998554

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK14968 putative methyltransferase; Provisional

Probab=99.57  E-value=1.2e-13  Score=105.79  Aligned_cols=127  Identities=20%  Similarity=0.190  Sum_probs=99.6

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEEccccCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSF-VTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~  178 (237)
                      ++..+...++.+|||+|||+|.++..++..   ..+++++|+++++++.+++++..++..++ +.+...|+.+ .+..  
T Consensus        15 l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~--   88 (188)
T PRK14968         15 LAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRG--   88 (188)
T ss_pred             HHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccc--
Confidence            444555578889999999999999998877   37899999999999999999887776543 7788888864 3333  


Q ss_pred             CCCCCEEEEeCCCh--------------------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCc
Q 026506          179 SGLADSIFLDLPQP--------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT  231 (237)
Q Consensus       179 ~~~~D~v~~~~~~~--------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~  231 (237)
                       ..||+|+.+.|-.                          ..+++++.+.|+|||.++++.+.....+++.+.+.+ +|.
T Consensus        89 -~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~  167 (188)
T PRK14968         89 -DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFE  167 (188)
T ss_pred             -cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCe
Confidence             4799999876421                          235899999999999998887776666778888887 775


Q ss_pred             cc
Q 026506          232 GK  233 (237)
Q Consensus       232 ~v  233 (237)
                      ..
T Consensus       168 ~~  169 (188)
T PRK14968        168 AE  169 (188)
T ss_pred             ee
Confidence            43

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.57  E-value=5.6e-14  Score=116.82  Aligned_cols=129  Identities=17%  Similarity=0.108  Sum_probs=101.2

Q ss_pred             cccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC
Q 026506           92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG  171 (237)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~  171 (237)
                      +.+.....++..++++++++|||+|||+|.+++..+..   ..+++++|+++.+++.+++|++..+..+ +++..+|+.+
T Consensus       166 l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~  241 (329)
T TIGR01177       166 MDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATK  241 (329)
T ss_pred             CCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhc
Confidence            34444445667778899999999999999998775543   4789999999999999999999988877 8889999986


Q ss_pred             CCCCCCCCCCCCEEEEeCCC--------------hhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cC
Q 026506          172 QGFPDEFSGLADSIFLDLPQ--------------PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NF  230 (237)
Q Consensus       172 ~~~~~~~~~~~D~v~~~~~~--------------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f  230 (237)
                      .+++.   +.||+|+.|+|-              ...+++.+.+.|+|||+++++.|....   +.+.+++ +|
T Consensus       242 l~~~~---~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~---~~~~~~~~g~  309 (329)
T TIGR01177       242 LPLSS---ESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRID---LESLAEDAFR  309 (329)
T ss_pred             CCccc---CCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCC---HHHHHhhcCc
Confidence            54443   689999998761              245788899999999999988875533   3344555 56

This family is found exclusively in the Archaea.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.57  E-value=2.2e-14  Score=113.34  Aligned_cols=111  Identities=18%  Similarity=0.174  Sum_probs=92.2

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC---
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD---  176 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~---  176 (237)
                      +...+...++.+|||+|||+|+.++.++..+++.++++++|+++++++.|+++++..++.+++++..+|+.+ .++.   
T Consensus        60 L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~-~L~~l~~  138 (234)
T PLN02781         60 LSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALS-ALDQLLN  138 (234)
T ss_pred             HHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHH-HHHHHHh
Confidence            334456677889999999999999999988777789999999999999999999999998889999999975 1111   


Q ss_pred             -CCCCCCCEEEEeCC--ChhchHHHHHhcccCCCEEEE
Q 026506          177 -EFSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCS  211 (237)
Q Consensus       177 -~~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~  211 (237)
                       ...+.||+||+|..  ....+++.+.+.|+|||.+++
T Consensus       139 ~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~  176 (234)
T PLN02781        139 NDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAF  176 (234)
T ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence             01257999999974  446789999999999999885

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.56  E-value=7.7e-15  Score=103.77  Aligned_cols=101  Identities=30%  Similarity=0.421  Sum_probs=84.1

Q ss_pred             CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC--CCCCCCCCCCEEE
Q 026506          109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--FPDEFSGLADSIF  186 (237)
Q Consensus       109 ~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~~~D~v~  186 (237)
                      |.+|||+|||+|.++..+++..  ..+++++|+++..++.++.++...+...++++..+|+.+..  ++.   ++||+|+
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~---~~~D~Iv   75 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPD---GKFDLIV   75 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTT---T-EEEEE
T ss_pred             CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccC---ceeEEEE
Confidence            5789999999999999998884  58999999999999999999999888777999999997622  333   7899999


Q ss_pred             EeCCCh-------------hchHHHHHhcccCCCEEEEEeC
Q 026506          187 LDLPQP-------------WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       187 ~~~~~~-------------~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .|+|-.             ..+++.+.+.|+|||.++++.|
T Consensus        76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            998732             2468999999999999998765

...

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.56  E-value=5.9e-14  Score=120.53  Aligned_cols=115  Identities=23%  Similarity=0.309  Sum_probs=89.7

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .+...+++.+|++|||+|||+|+.+.+++..++ .++++++|+++++++.+++++++.|+...+.+..+|....... ..
T Consensus       229 ~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~-~~  306 (426)
T TIGR00563       229 WVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW-AE  306 (426)
T ss_pred             HHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc-cc
Confidence            466678899999999999999999999999875 5799999999999999999999988763344456665432210 01


Q ss_pred             CCCCCEEEEeCCCh---------------------------hchHHHHHhcccCCCEEEEEeCCH
Q 026506          179 SGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       179 ~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                      .+.||.|++|+|+.                           .+.|.++.+.|||||+++ |+.|.
T Consensus       307 ~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lv-ystcs  370 (426)
T TIGR00563       307 NEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLV-YATCS  370 (426)
T ss_pred             ccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEE-EEeCC
Confidence            26799999987632                           247888999999999999 55553

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.56  E-value=1.5e-13  Score=114.55  Aligned_cols=125  Identities=18%  Similarity=0.233  Sum_probs=106.3

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC--CCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPD  176 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~  176 (237)
                      .++..+....+..+||||||+|..+..+|... +...++|+|+++.+++.+.+++...++.+ +.+..+|+..  ..++.
T Consensus       113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll~~~~~  190 (390)
T PRK14121        113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLLELLPS  190 (390)
T ss_pred             HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhhhhCCC
Confidence            35666666677899999999999999999985 67899999999999999999998888877 9999999854  23444


Q ss_pred             CCCCCCCEEEEeCCChh-----------chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh
Q 026506          177 EFSGLADSIFLDLPQPW-----------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL  228 (237)
Q Consensus       177 ~~~~~~D~v~~~~~~~~-----------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~  228 (237)
                         +.+|.|+++.|+||           .+++.+.+.|+|||.+.+.+......+.+++.+.+
T Consensus       191 ---~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~  250 (390)
T PRK14121        191 ---NSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLK  250 (390)
T ss_pred             ---CceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHh
Confidence               78999999998885           57999999999999999888888888777777765

>PTZ00146 fibrillarin; Provisional

Probab=99.56  E-value=7.4e-14  Score=111.99  Aligned_cols=130  Identities=22%  Similarity=0.313  Sum_probs=91.8

Q ss_pred             HhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCCCCCC
Q 026506          102 MYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSG  180 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~  180 (237)
                      ..+.+.++++|||+|||+|.++.+++..+++...|+++|+++.+.+...+.....  .+ +.++..|+.... +.. ...
T Consensus       126 ~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~N-I~~I~~Da~~p~~y~~-~~~  201 (293)
T PTZ00146        126 ANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PN-IVPIIEDARYPQKYRM-LVP  201 (293)
T ss_pred             ceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CC-CEEEECCccChhhhhc-ccC
Confidence            3456789999999999999999999999877789999999987665544443322  24 788888986321 111 115


Q ss_pred             CCCEEEEeCCChhc---hHHHHHhcccCCCEEEEEe--------CCHHH-HHHHHHHHHh-cCccccc
Q 026506          181 LADSIFLDLPQPWL---AIPSAKKMLKQDGILCSFS--------PCIEQ-VQRSCESLRL-NFTGKES  235 (237)
Q Consensus       181 ~~D~v~~~~~~~~~---~l~~~~~~L~~gG~l~~~~--------~~~~~-~~~~~~~l~~-~f~~v~~  235 (237)
                      .+|+|++|...+++   ++.++.+.|||||.+++..        +..++ ..+.++.|++ +|..++.
T Consensus       202 ~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~  269 (293)
T PTZ00146        202 MVDVIFADVAQPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQ  269 (293)
T ss_pred             CCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEE
Confidence            69999999876653   4668899999999998731        11111 2333577887 7886553

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.56  E-value=1.7e-14  Score=116.71  Aligned_cols=119  Identities=25%  Similarity=0.295  Sum_probs=92.9

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..++.+|||+|||||.+++..+..  +..+|+++|++|.+++.|++|++.+++..++.+.  ..  .....   ++||+|
T Consensus       159 ~~~g~~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~--~~~~~---~~~dlv  229 (295)
T PF06325_consen  159 VKPGKRVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LS--EDLVE---GKFDLV  229 (295)
T ss_dssp             SSTTSEEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CT--SCTCC---S-EEEE
T ss_pred             ccCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Ee--ccccc---ccCCEE
Confidence            567899999999999999777665  4578999999999999999999999988766553  11  22333   789999


Q ss_pred             EEeCCChh--chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHhcCccc
Q 026506          186 FLDLPQPW--LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGK  233 (237)
Q Consensus       186 ~~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~v  233 (237)
                      +.|.-...  ..+..+.+.|+|||.+++.+...++.+.+.+.++++|.-+
T Consensus       230 vANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~g~~~~  279 (295)
T PF06325_consen  230 VANILADVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQGFELV  279 (295)
T ss_dssp             EEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHTTEEEE
T ss_pred             EECCCHHHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHCCCEEE
Confidence            99986443  4677788899999999988888888999999987676644

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.55  E-value=2.4e-13  Score=110.56  Aligned_cols=118  Identities=25%  Similarity=0.273  Sum_probs=93.5

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      .++.+|||+|||+|.++..++... +..+++++|+|+.+++.|++++..+++.+++++..+|+.+ .++.   ..||+|+
T Consensus       120 ~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~---~~fD~Iv  194 (284)
T TIGR03533       120 EPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPG---RKYDLIV  194 (284)
T ss_pred             CCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCC---CCccEEE
Confidence            456799999999999999999875 4579999999999999999999988887669999999863 3433   5799999


Q ss_pred             EeCCCh------------------------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCc
Q 026506          187 LDLPQP------------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT  231 (237)
Q Consensus       187 ~~~~~~------------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~  231 (237)
                      +|+|-.                              ..+++.+.+.|+|||++++-... .+ +.+.+.+.+ +|.
T Consensus       195 ~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~-~~-~~v~~~~~~~~~~  268 (284)
T TIGR03533       195 SNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN-SM-EALEEAYPDVPFT  268 (284)
T ss_pred             ECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-CH-HHHHHHHHhCCCc
Confidence            987621                              23477888999999999976654 33 566666666 443

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.55  E-value=1.2e-13  Score=110.61  Aligned_cols=116  Identities=30%  Similarity=0.335  Sum_probs=90.3

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..++.+|||+|||+|.+++.+++. + ..+++++|+++.+++.|++++..+++...+.+..+|           ..||+|
T Consensus       117 ~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-----------~~fD~V  183 (250)
T PRK00517        117 VLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-----------LKADVI  183 (250)
T ss_pred             cCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-----------CCcCEE
Confidence            467899999999999988766553 3 357999999999999999999887764323332211           259999


Q ss_pred             EEeCCCh--hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCcccc
Q 026506          186 FLDLPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGKE  234 (237)
Q Consensus       186 ~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~  234 (237)
                      +.+....  ..+++++.+.|+|||++++......+.+.+.+.+++ +|..++
T Consensus       184 vani~~~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~  235 (250)
T PRK00517        184 VANILANPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDE  235 (250)
T ss_pred             EEcCcHHHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEE
Confidence            9876432  357889999999999999888888888888888888 786543

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.55  E-value=7e-14  Score=108.73  Aligned_cols=121  Identities=17%  Similarity=0.172  Sum_probs=92.5

Q ss_pred             HHhcC-CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC------
Q 026506          101 IMYLE-LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG------  173 (237)
Q Consensus       101 ~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------  173 (237)
                      ..... .+++.+|||+|||+|.++..+++..++.++|+++|+++.           ....+ +.+.++|+.+..      
T Consensus        43 ~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~-v~~i~~D~~~~~~~~~i~  110 (209)
T PRK11188         43 QQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVG-VDFLQGDFRDELVLKALL  110 (209)
T ss_pred             HHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCC-cEEEecCCCChHHHHHHH
Confidence            33444 578899999999999999999998766679999999871           12334 888999987532      


Q ss_pred             --CCCCCCCCCCEEEEeCCCh----------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHhcCccccc
Q 026506          174 --FPDEFSGLADSIFLDLPQP----------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGKES  235 (237)
Q Consensus       174 --~~~~~~~~~D~v~~~~~~~----------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~v~~  235 (237)
                        +..   +.||+|+.++...                ..+++.+.+.|+|||.+++.....+...+++..++..|..+++
T Consensus       111 ~~~~~---~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~  187 (209)
T PRK11188        111 ERVGD---SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKV  187 (209)
T ss_pred             HHhCC---CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEE
Confidence              222   6899999876211                2468999999999999998665556778888888888888776


Q ss_pred             c
Q 026506          236 C  236 (237)
Q Consensus       236 ~  236 (237)
                      +
T Consensus       188 ~  188 (209)
T PRK11188        188 R  188 (209)
T ss_pred             E
Confidence            4

>PRK08317 hypothetical protein; Provisional

Probab=99.55  E-value=3.5e-13  Score=106.93  Aligned_cols=110  Identities=31%  Similarity=0.427  Sum_probs=89.3

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ++..+.+.++.+|||+|||+|.++..++...++..+++++|+++.+++.++++...  ...++.+...|+....++.   
T Consensus        11 ~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~~~~---   85 (241)
T PRK08317         11 TFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGLPFPD---   85 (241)
T ss_pred             HHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccCCCCC---
Confidence            56677888999999999999999999998875668999999999999999987332  2234888888887544444   


Q ss_pred             CCCCEEEEe-----CCChhchHHHHHhcccCCCEEEEEeC
Q 026506          180 GLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       180 ~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +.||+|+..     .+++..+++++.+.|+|||.+++..+
T Consensus        86 ~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  125 (241)
T PRK08317         86 GSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT  125 (241)
T ss_pred             CCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence            689999864     35667799999999999999987654

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.55  E-value=2.7e-13  Score=108.61  Aligned_cols=122  Identities=28%  Similarity=0.311  Sum_probs=97.6

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL  187 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~  187 (237)
                      .+.+|||+|||+|.++..++... +..+++++|+++.+++.+++++...++.+ +++..+|+.+ .++.   +.||+|+.
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~d~~~-~~~~---~~fD~Vi~  160 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGLDN-VTFLQSDWFE-PLPG---GKFDLIVS  160 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhc-cCcC---CceeEEEE
Confidence            45699999999999999999875 45799999999999999999998888765 9999999874 3443   68999998


Q ss_pred             eCCCh-------------------------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCccccc
Q 026506          188 DLPQP-------------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGKES  235 (237)
Q Consensus       188 ~~~~~-------------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~~  235 (237)
                      |+|-.                               ..+++.+.+.|+|||.+++.... .+.+.+.+.+++ +|..+++
T Consensus       161 npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~-~~~~~~~~~l~~~gf~~v~~  239 (251)
T TIGR03534       161 NPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY-DQGEAVRALFEAAGFADVET  239 (251)
T ss_pred             CCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc-cHHHHHHHHHHhCCCCceEE
Confidence            87611                               13567889999999999866543 456777778887 8987765


Q ss_pred             c
Q 026506          236 C  236 (237)
Q Consensus       236 ~  236 (237)
                      .
T Consensus       240 ~  240 (251)
T TIGR03534       240 R  240 (251)
T ss_pred             E
Confidence            3

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.54  E-value=1.7e-13  Score=112.66  Aligned_cols=116  Identities=21%  Similarity=0.245  Sum_probs=92.1

Q ss_pred             ccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC
Q 026506           93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ  172 (237)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~  172 (237)
                      .|...+.+++.++++++++|||+|||+|.++..+++..+..+.|+++|+++++++.|++++...+.++ +.+..+|..+.
T Consensus        65 ~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~n-V~~i~gD~~~~  143 (322)
T PRK13943         65 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIEN-VIFVCGDGYYG  143 (322)
T ss_pred             cHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEeCChhhc
Confidence            34444557778888899999999999999999999886544689999999999999999999888866 88889997642


Q ss_pred             CCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          173 GFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       173 ~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                       .+..  ..||+|+++..... ....+.+.|+|||++++..
T Consensus       144 -~~~~--~~fD~Ii~~~g~~~-ip~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        144 -VPEF--APYDVIFVTVGVDE-VPETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             -cccc--CCccEEEECCchHH-hHHHHHHhcCCCCEEEEEe
Confidence             2221  56999998765433 5567889999999988643

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.54  E-value=1.7e-13  Score=105.83  Aligned_cols=105  Identities=19%  Similarity=0.151  Sum_probs=84.3

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      +++.+...++.+|||+|||+|..+..+++.   ..+|+++|+|+.+++.++++....++.+ +++...|+.+..++    
T Consensus        22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~~~----   93 (197)
T PRK11207         22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLTFD----   93 (197)
T ss_pred             HHHhcccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCCcC----
Confidence            566666677889999999999999998875   3689999999999999999988877765 88888888653332    


Q ss_pred             CCCCEEEEeCC-------ChhchHHHHHhcccCCCEEEEE
Q 026506          180 GLADSIFLDLP-------QPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       180 ~~~D~v~~~~~-------~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                      +.||+|++...       ....+++++.+.|+|||.++++
T Consensus        94 ~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207         94 GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            56999986432       2346899999999999996544

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.54  E-value=1.9e-13  Score=107.70  Aligned_cols=120  Identities=23%  Similarity=0.226  Sum_probs=95.2

Q ss_pred             CEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE--
Q 026506          110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL--  187 (237)
Q Consensus       110 ~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~--  187 (237)
                      .+|||+|||+|..+..+++.. +..+++++|+++++++.+++++...++.+++++...|+....++    +.||+|+.  
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~----~~fD~I~~~~   75 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP----DTYDLVFGFE   75 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC----CCCCEeehHH
Confidence            379999999999999988875 45789999999999999999998888877799999998644332    57999974  


Q ss_pred             ---eCCChhchHHHHHhcccCCCEEEEEeCCH---------------HHHHHHHHHHHh-cCcccc
Q 026506          188 ---DLPQPWLAIPSAKKMLKQDGILCSFSPCI---------------EQVQRSCESLRL-NFTGKE  234 (237)
Q Consensus       188 ---~~~~~~~~l~~~~~~L~~gG~l~~~~~~~---------------~~~~~~~~~l~~-~f~~v~  234 (237)
                         +.++...+++++.+.|+|||.+++..+..               ....++.+.+.+ +|..++
T Consensus        76 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~  141 (224)
T smart00828       76 VIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVE  141 (224)
T ss_pred             HHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEE
Confidence               34566679999999999999999765421               124567777777 787654

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.54  E-value=3e-13  Score=116.18  Aligned_cols=119  Identities=25%  Similarity=0.367  Sum_probs=93.5

Q ss_pred             ccccccHH--HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q 026506           91 ILYIADIS--FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD  168 (237)
Q Consensus        91 ~~~~~~~~--~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d  168 (237)
                      .++.++.+  .+...+++.+|++|||+|||+|..+.+++...+ ..+|+++|+++.+++.++++++.++..  +.+..+|
T Consensus       225 ~~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D  301 (427)
T PRK10901        225 WVSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGD  301 (427)
T ss_pred             eEEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcC
Confidence            44444444  456678889999999999999999999998863 379999999999999999999988864  6788889


Q ss_pred             ccCCC-CCCCCCCCCCEEEEeCCCh---------------------------hchHHHHHhcccCCCEEEEEeCC
Q 026506          169 IQGQG-FPDEFSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       169 ~~~~~-~~~~~~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      +.+.. +..  .+.||.|++|+|+.                           .++++.+.+.|||||+++ |+.|
T Consensus       302 ~~~~~~~~~--~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lv-ystc  373 (427)
T PRK10901        302 ARDPAQWWD--GQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLL-YATC  373 (427)
T ss_pred             cccchhhcc--cCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE-EEeC
Confidence            86421 111  15799999998743                           147889999999999998 5555

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.54  E-value=3.6e-14  Score=109.34  Aligned_cols=102  Identities=25%  Similarity=0.341  Sum_probs=84.1

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      -+|.+|||+|||.|.++..+|+.   +.+|+++|.++..++.|+.++...++.  +++....+.+.....   ++||+|+
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~---~~FDvV~  129 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAG---GQFDVVT  129 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcC---CCccEEE
Confidence            57899999999999999999887   389999999999999999998877754  566666665422222   6899997


Q ss_pred             E-----eCCChhchHHHHHhcccCCCEEEEEeCCH
Q 026506          187 L-----DLPQPWLAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       187 ~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                      +     +.+++..++..+.+.+||||.+++..+..
T Consensus       130 cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinr  164 (243)
T COG2227         130 CMEVLEHVPDPESFLRACAKLVKPGGILFLSTINR  164 (243)
T ss_pred             EhhHHHccCCHHHHHHHHHHHcCCCcEEEEecccc
Confidence            4     77899999999999999999999666553

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.53  E-value=1.2e-13  Score=113.65  Aligned_cols=103  Identities=17%  Similarity=0.141  Sum_probs=83.7

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      .++.+|||+|||+|.++..+++.   ..+|+++|+++++++.|+++....+....+++..+|+.+..+..   +.||+|+
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~---~~FD~Vi  203 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEG---RKFDAVL  203 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhcc---CCCCEEE
Confidence            46789999999999999888754   36899999999999999988765544345899999986543333   6899997


Q ss_pred             E-----eCCChhchHHHHHhcccCCCEEEEEeCC
Q 026506          187 L-----DLPQPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       187 ~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      +     +.+++..+++.+.+.|||||.+++..+.
T Consensus       204 ~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~n  237 (322)
T PLN02396        204 SLEVIEHVANPAEFCKSLSALTIPNGATVLSTIN  237 (322)
T ss_pred             EhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            5     4567788999999999999999977654

>PRK04457 spermidine synthase; Provisional

Probab=99.53  E-value=3.7e-13  Score=108.12  Aligned_cols=123  Identities=22%  Similarity=0.181  Sum_probs=93.8

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      .++.+|||+|||+|.++..+++.. +..+++++|+++++++.|++++...+...+++++.+|+.+. +.. ...+||+|+
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~-l~~-~~~~yD~I~  141 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY-IAV-HRHSTDVIL  141 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH-HHh-CCCCCCEEE
Confidence            456799999999999999998886 56899999999999999999876544445699999998641 111 125799999


Q ss_pred             EeCCC---------hhchHHHHHhcccCCCEEEEEeC-CHHHHHHHHHHHHhcCcc
Q 026506          187 LDLPQ---------PWLAIPSAKKMLKQDGILCSFSP-CIEQVQRSCESLRLNFTG  232 (237)
Q Consensus       187 ~~~~~---------~~~~l~~~~~~L~~gG~l~~~~~-~~~~~~~~~~~l~~~f~~  232 (237)
                      +|.-+         ..++++.+.+.|+|||++++... ........++.+++.|..
T Consensus       142 ~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~  197 (262)
T PRK04457        142 VDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEG  197 (262)
T ss_pred             EeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCC
Confidence            87522         14689999999999999987432 223456677778776764

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.53  E-value=3.9e-13  Score=109.51  Aligned_cols=121  Identities=25%  Similarity=0.240  Sum_probs=94.9

Q ss_pred             CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506          109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD  188 (237)
Q Consensus       109 ~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~  188 (237)
                      ..+|||+|||+|.++..++... +..+++++|+++.+++.|++|+..++..+++++..+|+.+ .++.   ..||+|+.|
T Consensus       115 ~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~---~~fDlIvsN  189 (284)
T TIGR00536       115 ILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAG---QKIDIIVSN  189 (284)
T ss_pred             CCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcC---CCccEEEEC
Confidence            3699999999999999999875 4579999999999999999999988876669999999874 3432   479999998


Q ss_pred             CCCh------------------------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh--cCccccc
Q 026506          189 LPQP------------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL--NFTGKES  235 (237)
Q Consensus       189 ~~~~------------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~--~f~~v~~  235 (237)
                      +|-.                              ..+++.+.+.|+|||.+++-.. ..|...+.+.++.  +|..+++
T Consensus       190 PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g-~~q~~~~~~~~~~~~~~~~~~~  267 (284)
T TIGR00536       190 PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG-NWQQKSLKELLRIKFTWYDVEN  267 (284)
T ss_pred             CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC-ccHHHHHHHHHHhcCCCceeEE
Confidence            6511                              1357788899999999986554 4566677777773  5766544

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.53  E-value=5.3e-14  Score=95.38  Aligned_cols=90  Identities=29%  Similarity=0.455  Sum_probs=72.7

Q ss_pred             EEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe----
Q 026506          113 LESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD----  188 (237)
Q Consensus       113 ldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~----  188 (237)
                      ||+|||+|..+..+++.  +..+++++|+++++++.++++....+    +.+...|+.+.++++   +.||+|++.    
T Consensus         1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~----~~~~~~d~~~l~~~~---~sfD~v~~~~~~~   71 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEG----VSFRQGDAEDLPFPD---NSFDVVFSNSVLH   71 (95)
T ss_dssp             EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTST----EEEEESBTTSSSS-T---T-EEEEEEESHGG
T ss_pred             CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccC----chheeehHHhCcccc---cccccccccccee
Confidence            79999999999999988  45899999999999999999754332    668999998877776   899999864    


Q ss_pred             -CCChhchHHHHHhcccCCCEEEE
Q 026506          189 -LPQPWLAIPSAKKMLKQDGILCS  211 (237)
Q Consensus       189 -~~~~~~~l~~~~~~L~~gG~l~~  211 (237)
                       ..+...+++++.+.|||||++++
T Consensus        72 ~~~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   72 HLEDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             GSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred             eccCHHHHHHHHHHHcCcCeEEeC
Confidence             34556789999999999999984

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.52  E-value=1.9e-13  Score=104.76  Aligned_cols=117  Identities=22%  Similarity=0.270  Sum_probs=87.3

Q ss_pred             hcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC--------C
Q 026506          103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--------F  174 (237)
Q Consensus       103 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~  174 (237)
                      ...+.++.+|||+|||+|.++..+++...+.++++++|+++.+           ...+ +.+...|+.+..        .
T Consensus        27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~-i~~~~~d~~~~~~~~~l~~~~   94 (188)
T TIGR00438        27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIEN-VDFIRGDFTDEEVLNKIRERV   94 (188)
T ss_pred             hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCC-ceEEEeeCCChhHHHHHHHHh
Confidence            3356889999999999999999998887556789999999854           1223 677778876421        2


Q ss_pred             CCCCCCCCCEEEEeCCC----------------hhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHhcCcccc
Q 026506          175 PDEFSGLADSIFLDLPQ----------------PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGKE  234 (237)
Q Consensus       175 ~~~~~~~~D~v~~~~~~----------------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~v~  234 (237)
                      +.   ++||+|+.+...                ...++..+.+.|+|||++++.........++++.++..|..++
T Consensus        95 ~~---~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~~~~~  167 (188)
T TIGR00438        95 GD---DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKVK  167 (188)
T ss_pred             CC---CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhhceEE
Confidence            22   579999987421                1457899999999999999876666667788888777665443

>PLN02476 O-methyltransferase

Probab=99.52  E-value=1.3e-13  Score=110.38  Aligned_cols=112  Identities=15%  Similarity=0.154  Sum_probs=93.3

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC---
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD---  176 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~---  176 (237)
                      +...+...++.+|||+|+++|+.++.++..+++.++++++|.+++..+.|++++++.|+.+++++..+|+.+ .++.   
T Consensus       110 L~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e-~L~~l~~  188 (278)
T PLN02476        110 LAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE-SLKSMIQ  188 (278)
T ss_pred             HHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH-HHHHHHh
Confidence            444556677889999999999999999998876789999999999999999999999998789999999875 1111   


Q ss_pred             -CCCCCCCEEEEeCCC--hhchHHHHHhcccCCCEEEEE
Q 026506          177 -EFSGLADSIFLDLPQ--PWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       177 -~~~~~~D~v~~~~~~--~~~~l~~~~~~L~~gG~l~~~  212 (237)
                       ...+.||+||+|...  ...+++.+.+.|+|||.+++-
T Consensus       189 ~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~D  227 (278)
T PLN02476        189 NGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMD  227 (278)
T ss_pred             cccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence             112579999999874  467899999999999999844

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.52  E-value=1.4e-13  Score=113.53  Aligned_cols=127  Identities=21%  Similarity=0.271  Sum_probs=96.0

Q ss_pred             HHhcCC-CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          101 IMYLEL-VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       101 ~~~~~~-~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ++.+.. .++.+|||+|||+|.++..+++.. +..+++++|.++++++.|+++...   .+ +++..+|+.+.+++.   
T Consensus       105 l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~---~~-i~~i~gD~e~lp~~~---  176 (340)
T PLN02490        105 LEPADLSDRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL---KE-CKIIEGDAEDLPFPT---  176 (340)
T ss_pred             HhhcccCCCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhc---cC-CeEEeccHHhCCCCC---
Confidence            343433 467899999999999998888876 347899999999999999987542   23 788899987655554   


Q ss_pred             CCCCEEEEe-----CCChhchHHHHHhcccCCCEEEEEeCCH----------------HHHHHHHHHHHh-cCccccc
Q 026506          180 GLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSPCI----------------EQVQRSCESLRL-NFTGKES  235 (237)
Q Consensus       180 ~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~----------------~~~~~~~~~l~~-~f~~v~~  235 (237)
                      +.||+|+..     .+++...++++.+.|+|||++++..+..                .+.+++.+.+++ ||..+++
T Consensus       177 ~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i  254 (340)
T PLN02490        177 DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL  254 (340)
T ss_pred             CceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence            679999864     3456678999999999999998765321                123666677777 7887654

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.52  E-value=4.8e-13  Score=112.27  Aligned_cols=124  Identities=23%  Similarity=0.242  Sum_probs=96.6

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..++.+|||+|||+|.++..++... +..+++++|+|+.+++.|++|+..++.  ++++..+|+.+..++.  .+.||+|
T Consensus       249 l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l~~--~~~FDLI  323 (423)
T PRK14966        249 LPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTDMPS--EGKWDII  323 (423)
T ss_pred             cCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhcccccc--CCCccEE
Confidence            3456799999999999999888764 557999999999999999999987774  4899999987533322  1579999


Q ss_pred             EEeCCCh------------------------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCcccc
Q 026506          186 FLDLPQP------------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGKE  234 (237)
Q Consensus       186 ~~~~~~~------------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~  234 (237)
                      ++|+|--                              ...++.+.+.|+|||.+++... ..|.+.+.+.+++ +|..++
T Consensus       324 VSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG-~~Q~e~V~~ll~~~Gf~~v~  402 (423)
T PRK14966        324 VSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG-FDQGAAVRGVLAENGFSGVE  402 (423)
T ss_pred             EECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC-ccHHHHHHHHHHHCCCcEEE
Confidence            9988620                              1346666789999999886654 4677888888888 787665


Q ss_pred             c
Q 026506          235 S  235 (237)
Q Consensus       235 ~  235 (237)
                      +
T Consensus       403 v  403 (423)
T PRK14966        403 T  403 (423)
T ss_pred             E
Confidence            4

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.51  E-value=4.9e-13  Score=116.70  Aligned_cols=107  Identities=26%  Similarity=0.258  Sum_probs=87.7

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      +++.+.+.++.+|||+|||+|..+..++...  ..+++++|+|+.+++.|+++..  +...++++..+|+....++.   
T Consensus       258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~---  330 (475)
T PLN02336        258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPD---  330 (475)
T ss_pred             HHHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCC---
Confidence            5566667788999999999999998888775  4689999999999999998764  33345899999987655554   


Q ss_pred             CCCCEEEE-----eCCChhchHHHHHhcccCCCEEEEEe
Q 026506          180 GLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       180 ~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +.||+|++     +.+++..+++++.+.|+|||++++..
T Consensus       331 ~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~  369 (475)
T PLN02336        331 NSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISD  369 (475)
T ss_pred             CCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            67999975     34567789999999999999998764

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.51  E-value=4.8e-13  Score=110.28  Aligned_cols=131  Identities=15%  Similarity=0.198  Sum_probs=101.7

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .+++.++..++.+|||+|||+|.++..+++.. |..+++++|. +.+++.+++++...++.+++++..+|+.+..++   
T Consensus       140 ~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~---  214 (306)
T TIGR02716       140 LLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP---  214 (306)
T ss_pred             HHHHHcCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC---
Confidence            36667778888999999999999999999885 6689999997 899999999999888887899999999754443   


Q ss_pred             CCCCCEEEEeC-----CCh--hchHHHHHhcccCCCEEEEEeCCH-----H----------------------HHHHHHH
Q 026506          179 SGLADSIFLDL-----PQP--WLAIPSAKKMLKQDGILCSFSPCI-----E----------------------QVQRSCE  224 (237)
Q Consensus       179 ~~~~D~v~~~~-----~~~--~~~l~~~~~~L~~gG~l~~~~~~~-----~----------------------~~~~~~~  224 (237)
                        .+|+|++..     ++.  ..+++++.+.|+|||++++.....     .                      ..+++.+
T Consensus       215 --~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  292 (306)
T TIGR02716       215 --EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKE  292 (306)
T ss_pred             --CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHH
Confidence              369886432     222  357999999999999998773211     0                      0246777


Q ss_pred             HHHh-cCcccccc
Q 026506          225 SLRL-NFTGKESC  236 (237)
Q Consensus       225 ~l~~-~f~~v~~~  236 (237)
                      .+++ ||+++++.
T Consensus       293 ll~~aGf~~v~~~  305 (306)
T TIGR02716       293 ILESLGYKDVTMV  305 (306)
T ss_pred             HHHHcCCCeeEec
Confidence            7888 89887753

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.51  E-value=6.8e-13  Score=105.38  Aligned_cols=111  Identities=32%  Similarity=0.458  Sum_probs=89.1

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ++..+...++.+|||+|||+|.++..++...+...+++++|+++.+++.+++++...+....+.+...|+.+...+.   
T Consensus        43 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~---  119 (239)
T PRK00216         43 TIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPD---  119 (239)
T ss_pred             HHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCC---
Confidence            55566667789999999999999999988864358999999999999999998876555555889999987543333   


Q ss_pred             CCCCEEEEe-----CCChhchHHHHHhcccCCCEEEEEe
Q 026506          180 GLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       180 ~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +.||+|+..     .+.....++++.+.|+|||.+++..
T Consensus       120 ~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~  158 (239)
T PRK00216        120 NSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILE  158 (239)
T ss_pred             CCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEE
Confidence            679999753     3456678999999999999988653

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.51  E-value=9.4e-13  Score=106.94  Aligned_cols=126  Identities=28%  Similarity=0.279  Sum_probs=96.4

Q ss_pred             hcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCC
Q 026506          103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA  182 (237)
Q Consensus       103 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  182 (237)
                      .....++.+|||+|||+|..+..++... +..+++++|+++.+++.+++++. .....++.+..+|+.. .++.   +.|
T Consensus       103 ~~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~-~~~~---~~f  176 (275)
T PRK09328        103 ALLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFE-PLPG---GRF  176 (275)
T ss_pred             hccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccC-cCCC---Cce
Confidence            3445677899999999999999999886 55899999999999999999987 3333458999999863 3332   679


Q ss_pred             CEEEEeCCCh-------------------------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cC
Q 026506          183 DSIFLDLPQP-------------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NF  230 (237)
Q Consensus       183 D~v~~~~~~~-------------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f  230 (237)
                      |+|+.|+|-.                               ..+++++.+.|+|||.+++... ..+.+.+.+.+++ +|
T Consensus       177 D~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g-~~~~~~~~~~l~~~gf  255 (275)
T PRK09328        177 DLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG-YDQGEAVRALLAAAGF  255 (275)
T ss_pred             eEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC-chHHHHHHHHHHhCCC
Confidence            9999886521                               1246667799999999986543 3556777777877 78


Q ss_pred             ccccc
Q 026506          231 TGKES  235 (237)
Q Consensus       231 ~~v~~  235 (237)
                      ..+++
T Consensus       256 ~~v~~  260 (275)
T PRK09328        256 ADVET  260 (275)
T ss_pred             ceeEE
Confidence            76654

>PLN03075 nicotianamine synthase; Provisional

Probab=99.51  E-value=4.4e-13  Score=107.98  Aligned_cols=107  Identities=21%  Similarity=0.125  Sum_probs=85.1

Q ss_pred             cCCCCCCEEEEEccCccHHHHH-HHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEEccccCCCCCCCCCCC
Q 026506          104 LELVPGCLVLESGTGSGSLTTS-LARAVAPTGHVYTFDFHEQRAASAREDFER-TGVSSFVTVGVRDIQGQGFPDEFSGL  181 (237)
Q Consensus       104 ~~~~~~~~vldiG~G~G~~~~~-~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~i~~~~~d~~~~~~~~~~~~~  181 (237)
                      +...++.+|+|+|||+|.++.. +++...+.++++++|+++++.+.|++.+.. .++.++++|..+|+.+. .+.  .+.
T Consensus       119 ~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~-~~~--l~~  195 (296)
T PLN03075        119 HVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDV-TES--LKE  195 (296)
T ss_pred             hhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhc-ccc--cCC
Confidence            3334779999999999866544 444455778999999999999999999964 77878899999999852 211  167


Q ss_pred             CCEEEEeC------CChhchHHHHHhcccCCCEEEEEe
Q 026506          182 ADSIFLDL------PQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       182 ~D~v~~~~------~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ||+||++.      ..+.++++++.+.|+|||.+++=+
T Consensus       196 FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        196 YDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             cCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            99999875      466689999999999999999554

>TIGR00452 methyltransferase, putative

Probab=99.50  E-value=5.1e-13  Score=109.43  Aligned_cols=130  Identities=16%  Similarity=0.059  Sum_probs=91.0

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ++..+...++.+|||+|||+|.++..++.. + ...|+++|+++.++..++..-...+....+.+...++.+.  +..  
T Consensus       113 ~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~-g-~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l--p~~--  186 (314)
T TIGR00452       113 VLPHLSPLKGRTILDVGCGSGYHMWRMLGH-G-AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL--HEL--  186 (314)
T ss_pred             HHHhcCCCCCCEEEEeccCCcHHHHHHHHc-C-CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC--CCC--
Confidence            455566778899999999999998877765 3 3589999999998876543222222223477777777653  221  


Q ss_pred             CCCCEEEEe-----CCChhchHHHHHhcccCCCEEEEEeCCH-----------------------HHHHHHHHHHHh-cC
Q 026506          180 GLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSPCI-----------------------EQVQRSCESLRL-NF  230 (237)
Q Consensus       180 ~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~-----------------------~~~~~~~~~l~~-~f  230 (237)
                      ..||+|++.     .+++...++++.+.|+|||.+++.....                       .+...+...+++ ||
T Consensus       187 ~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF  266 (314)
T TIGR00452       187 YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGF  266 (314)
T ss_pred             CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCC
Confidence            479999863     4567789999999999999998642110                       023455566777 89


Q ss_pred             ccccc
Q 026506          231 TGKES  235 (237)
Q Consensus       231 ~~v~~  235 (237)
                      +++++
T Consensus       267 ~~V~i  271 (314)
T TIGR00452       267 ENFRI  271 (314)
T ss_pred             eEEEE
Confidence            88765

Known examples to date are restricted to the proteobacteria.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.50  E-value=6.3e-13  Score=109.87  Aligned_cols=130  Identities=18%  Similarity=0.054  Sum_probs=93.0

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      +...++..++.+|||+|||+|.++..++.. ++ ..|+++|+++.++..++......+...++.+...|+.+.++ .   
T Consensus       114 l~~~l~~l~g~~VLDIGCG~G~~~~~la~~-g~-~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~---  187 (322)
T PRK15068        114 VLPHLSPLKGRTVLDVGCGNGYHMWRMLGA-GA-KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-L---  187 (322)
T ss_pred             HHHhhCCCCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-c---
Confidence            344556567899999999999999988876 33 57999999999887654433222323348899999876443 2   


Q ss_pred             CCCCEEEEe-----CCChhchHHHHHhcccCCCEEEEEeCC------------H-----------HHHHHHHHHHHh-cC
Q 026506          180 GLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSPC------------I-----------EQVQRSCESLRL-NF  230 (237)
Q Consensus       180 ~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~------------~-----------~~~~~~~~~l~~-~f  230 (237)
                      +.||+|++.     ..++...++++.+.|+|||.+++-...            .           .....+...|++ ||
T Consensus       188 ~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF  267 (322)
T PRK15068        188 KAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGF  267 (322)
T ss_pred             CCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCC
Confidence            779999863     356678999999999999999854211            0           023456667777 78


Q ss_pred             ccccc
Q 026506          231 TGKES  235 (237)
Q Consensus       231 ~~v~~  235 (237)
                      +.+++
T Consensus       268 ~~i~~  272 (322)
T PRK15068        268 KDVRI  272 (322)
T ss_pred             ceEEE
Confidence            87764

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.50  E-value=7.7e-13  Score=105.71  Aligned_cols=117  Identities=21%  Similarity=0.237  Sum_probs=89.8

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL  187 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~  187 (237)
                      ++.+|||+|||+|.++..++... +..+++++|+|+.+++.|++|+..++    .++..+|+.+ .++....+.||+|+.
T Consensus        86 ~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~-~l~~~~~~~fDlVv~  159 (251)
T TIGR03704        86 GTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYD-ALPTALRGRVDILAA  159 (251)
T ss_pred             CCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechh-hcchhcCCCEeEEEE
Confidence            34589999999999999998875 44689999999999999999988765    3678888764 222111257999999


Q ss_pred             eCCCh-------------------------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCc
Q 026506          188 DLPQP-------------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT  231 (237)
Q Consensus       188 ~~~~~-------------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~  231 (237)
                      |+|-.                               ..+++.+.+.|+|||++++... ..+..++.+.+++ +|.
T Consensus       160 NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~-~~~~~~v~~~l~~~g~~  234 (251)
T TIGR03704       160 NAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS-ERQAPLAVEAFARAGLI  234 (251)
T ss_pred             CCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-cchHHHHHHHHHHCCCC
Confidence            98621                               1456677899999999996654 4567888888887 654

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.50  E-value=4.1e-13  Score=107.87  Aligned_cols=103  Identities=21%  Similarity=0.224  Sum_probs=83.8

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .++..+...++.+|||+|||+|.++..++... +..+++++|+++.+++.|+++       + +++..+|+.+. .+.  
T Consensus        20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~-------~-~~~~~~d~~~~-~~~--   87 (255)
T PRK14103         20 DLLARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER-------G-VDARTGDVRDW-KPK--   87 (255)
T ss_pred             HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc-------C-CcEEEcChhhC-CCC--
Confidence            36777777888999999999999999998875 557999999999999999762       2 67788888642 232  


Q ss_pred             CCCCCEEEEeC-----CChhchHHHHHhcccCCCEEEEEeC
Q 026506          179 SGLADSIFLDL-----PQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       179 ~~~~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                       +.||+|+++.     +++..+++++.+.|||||.+++..+
T Consensus        88 -~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~  127 (255)
T PRK14103         88 -PDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVP  127 (255)
T ss_pred             -CCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence             6899998753     5667789999999999999987643

>TIGR00740 methyltransferase, putative

Probab=99.49  E-value=5.8e-13  Score=105.98  Aligned_cols=103  Identities=17%  Similarity=0.214  Sum_probs=83.1

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      .++.+|||+|||+|..+..+++.+ .+..+++++|+++++++.|++++...+...++++..+|+.+..+     ..+|+|
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~d~v  126 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-----KNASMV  126 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-----CCCCEE
Confidence            577899999999999999988875 35689999999999999999998776655558999999975332     348887


Q ss_pred             EEeCC-------ChhchHHHHHhcccCCCEEEEEeC
Q 026506          186 FLDLP-------QPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       186 ~~~~~-------~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ++...       +...+++++.+.|+|||.+++..+
T Consensus       127 ~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~  162 (239)
T TIGR00740       127 ILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK  162 (239)
T ss_pred             eeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence            75432       234689999999999999997754

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.49  E-value=7.6e-14  Score=107.63  Aligned_cols=111  Identities=26%  Similarity=0.328  Sum_probs=89.7

Q ss_pred             hcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC--CCCC-CCCC
Q 026506          103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFP-DEFS  179 (237)
Q Consensus       103 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~-~~~~  179 (237)
                      ........+|||||+++|+.++.++..++.+++++++|.+++..+.|+++++..|+.++++++.+|+.+  ..+. ....
T Consensus        40 l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~  119 (205)
T PF01596_consen   40 LVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEE  119 (205)
T ss_dssp             HHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTT
T ss_pred             HHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCC
Confidence            334456689999999999999999998877799999999999999999999999988889999999874  1111 1112


Q ss_pred             CCCCEEEEeCCC--hhchHHHHHhcccCCCEEEEEe
Q 026506          180 GLADSIFLDLPQ--PWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       180 ~~~D~v~~~~~~--~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +.||+||+|...  +...++.+.+.|+|||.+++-.
T Consensus       120 ~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN  155 (205)
T PF01596_consen  120 GQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADN  155 (205)
T ss_dssp             TSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred             CceeEEEEcccccchhhHHHHHhhhccCCeEEEEcc
Confidence            579999999863  4467899999999999999653

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=99.48  E-value=1.3e-12  Score=109.27  Aligned_cols=134  Identities=29%  Similarity=0.409  Sum_probs=103.2

Q ss_pred             CcccccccccHHH--HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 026506           87 HRTQILYIADISF--VIMYLELVPGCLVLESGTGSGSLTTSLARAVAP-TGHVYTFDFHEQRAASAREDFERTGVSSFVT  163 (237)
Q Consensus        87 ~~~~~~~~~~~~~--~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~  163 (237)
                      .....++.++.+.  ....+++.+|++|||+++++|+-+.+++..+.. ...|+++|.++.+++..++++++.|+.+ +.
T Consensus       133 ~~~G~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~  211 (355)
T COG0144         133 FAEGLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VI  211 (355)
T ss_pred             hhceEEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eE
Confidence            3445556665553  456789999999999999999999999999854 3456999999999999999999999988 77


Q ss_pred             EEEccccCC--CCCCCCCCCCCEEEEeCCCh---------------------------hchHHHHHhcccCCCEEEEEeC
Q 026506          164 VGVRDIQGQ--GFPDEFSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       164 ~~~~d~~~~--~~~~~~~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +...|....  ....  ...||.|++|+|+.                           .++|..+.+.|||||+|+ |++
T Consensus       212 ~~~~d~~~~~~~~~~--~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LV-YST  288 (355)
T COG0144         212 VVNKDARRLAELLPG--GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLV-YST  288 (355)
T ss_pred             EEecccccccccccc--cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE-EEc
Confidence            777776531  1111  12599999998854                           257999999999999999 888


Q ss_pred             CH---HHHHHHHH
Q 026506          215 CI---EQVQRSCE  224 (237)
Q Consensus       215 ~~---~~~~~~~~  224 (237)
                      |+   +..+...+
T Consensus       289 CS~~~eENE~vV~  301 (355)
T COG0144         289 CSLTPEENEEVVE  301 (355)
T ss_pred             cCCchhcCHHHHH
Confidence            86   33444443

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.48  E-value=5.6e-13  Score=116.33  Aligned_cols=122  Identities=19%  Similarity=0.184  Sum_probs=95.8

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL  187 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~  187 (237)
                      ++.+|||+|||+|.+++.++... +..+++++|+|+.+++.|++++..+++.+++.+..+|+.+ .++.   +.||+|++
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~---~~fDlIvs  212 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEK---QKFDFIVS  212 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcC---CCccEEEE
Confidence            45799999999999999988875 5579999999999999999999888876669999999863 3333   57999999


Q ss_pred             eCCCh-------------------------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCccccc
Q 026506          188 DLPQP-------------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGKES  235 (237)
Q Consensus       188 ~~~~~-------------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~~  235 (237)
                      |+|--                               ..+++.+.+.|+|||.+++... ..+.+.+.+.+.+ +|..+++
T Consensus       213 NPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig-~~q~~~v~~~~~~~g~~~~~~  291 (506)
T PRK01544        213 NPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG-FKQEEAVTQIFLDHGYNIESV  291 (506)
T ss_pred             CCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC-CchHHHHHHHHHhcCCCceEE
Confidence            87510                               1246678889999999986543 4567777777777 7765543

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.48  E-value=5e-13  Score=107.13  Aligned_cols=117  Identities=15%  Similarity=0.147  Sum_probs=87.7

Q ss_pred             HHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC
Q 026506           97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD  176 (237)
Q Consensus        97 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  176 (237)
                      ...+++.+...++.+|||+|||+|.++..++..   ..+++++|+++.+++.++++..     . ..+..+|+...+++.
T Consensus        31 a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~-----~-~~~~~~d~~~~~~~~  101 (251)
T PRK10258         31 ADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA-----A-DHYLAGDIESLPLAT  101 (251)
T ss_pred             HHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-----C-CCEEEcCcccCcCCC
Confidence            334566666666789999999999998877654   3789999999999999988632     1 456788887655554


Q ss_pred             CCCCCCCEEEEeC-----CChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHH
Q 026506          177 EFSGLADSIFLDL-----PQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCES  225 (237)
Q Consensus       177 ~~~~~~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~  225 (237)
                         +.||+|+.+.     +++..++.++.+.|+|||.+++..+....+.++.+.
T Consensus       102 ---~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~  152 (251)
T PRK10258        102 ---ATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQA  152 (251)
T ss_pred             ---CcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHH
Confidence               6899998754     355578999999999999999776554444444433

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.47  E-value=7.3e-13  Score=102.07  Aligned_cols=104  Identities=20%  Similarity=0.186  Sum_probs=80.4

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ++..+...++.+|||+|||+|..+..++..   ..+|+++|+++.+++.++++....++.  +.....|+....++    
T Consensus        22 l~~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~----   92 (195)
T TIGR00477        22 VREAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALN----   92 (195)
T ss_pred             HHHHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcccc----
Confidence            556666666789999999999999998875   368999999999999999988776753  66677776532222    


Q ss_pred             CCCCEEEEeCC-------ChhchHHHHHhcccCCCEEEEE
Q 026506          180 GLADSIFLDLP-------QPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       180 ~~~D~v~~~~~-------~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                      +.||+|+....       ....+++++.+.|+|||+++++
T Consensus        93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477        93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            57999976432       2246899999999999996655

Part of a tellurite-reducing operon tehA and tehB

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=8.5e-13  Score=106.81  Aligned_cols=115  Identities=29%  Similarity=0.350  Sum_probs=90.7

Q ss_pred             EEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCC
Q 026506          111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP  190 (237)
Q Consensus       111 ~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~  190 (237)
                      +|||+|||||.+++.++... +..+|+++|+|+.+++.|++|+..+++.+ +.+...|++. ...    ++||+|+.|+|
T Consensus       113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l~~-~~~~~~dlf~-~~~----~~fDlIVsNPP  185 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGLVR-VLVVQSDLFE-PLR----GKFDLIVSNPP  185 (280)
T ss_pred             cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCCcc-EEEEeeeccc-ccC----CceeEEEeCCC
Confidence            89999999999999999885 55799999999999999999999999844 6666668763 333    58999999886


Q ss_pred             ----C------------h--------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-c-Cccc
Q 026506          191 ----Q------------P--------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-N-FTGK  233 (237)
Q Consensus       191 ----~------------~--------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~-f~~v  233 (237)
                          .            |              ..++..+.+.|+|||.+++... ..+.+.+.+.+.+ + |..+
T Consensus       186 Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g-~~q~~~v~~~~~~~~~~~~v  259 (280)
T COG2890         186 YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG-LTQGEAVKALFEDTGFFEIV  259 (280)
T ss_pred             CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC-CCcHHHHHHHHHhcCCceEE
Confidence                1            0              1357788999999999886654 3456777777777 6 4433

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.47  E-value=5.5e-13  Score=100.69  Aligned_cols=106  Identities=23%  Similarity=0.274  Sum_probs=89.2

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ++....+.+..+|.|+|||+|..+..++++. |...++++|.|++|++.|+++     ..+ .++..+|+.+  +...  
T Consensus        22 Lla~Vp~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~r-----lp~-~~f~~aDl~~--w~p~--   90 (257)
T COG4106          22 LLARVPLERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQR-----LPD-ATFEEADLRT--WKPE--   90 (257)
T ss_pred             HHhhCCccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHh-----CCC-CceecccHhh--cCCC--
Confidence            6667777888999999999999999999997 668999999999999999875     234 8889999975  3321  


Q ss_pred             CCCCEEEEeC-----CChhchHHHHHhcccCCCEEEEEeCCH
Q 026506          180 GLADSIFLDL-----PQPWLAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       180 ~~~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                      ...|++|.|.     |++.++|.++...|.|||.|.+-.|..
T Consensus        91 ~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN  132 (257)
T COG4106          91 QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDN  132 (257)
T ss_pred             CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence            5789998875     566789999999999999999888765

>PRK00811 spermidine synthase; Provisional

Probab=99.47  E-value=1e-12  Score=106.81  Aligned_cols=125  Identities=18%  Similarity=0.192  Sum_probs=94.5

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--C--CCcEEEEEccccCCCCCCCCCCCCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG--V--SSFVTVGVRDIQGQGFPDEFSGLAD  183 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~--~~~i~~~~~d~~~~~~~~~~~~~~D  183 (237)
                      .+.+||++|||.|..+..++++. +..+|+++|+++++++.|++++...+  .  +.+++++.+|+... +.. ..++||
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~-l~~-~~~~yD  152 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKF-VAE-TENSFD  152 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHH-Hhh-CCCccc
Confidence            45799999999999999888752 44789999999999999999886432  1  45689999998751 111 226899


Q ss_pred             EEEEeCCCh---------hchHHHHHhcccCCCEEEEEeCC----HHHHHHHHHHHHhcCccccc
Q 026506          184 SIFLDLPQP---------WLAIPSAKKMLKQDGILCSFSPC----IEQVQRSCESLRLNFTGKES  235 (237)
Q Consensus       184 ~v~~~~~~~---------~~~l~~~~~~L~~gG~l~~~~~~----~~~~~~~~~~l~~~f~~v~~  235 (237)
                      +|++|..++         .++++.+.+.|+|||++++....    .....++.+.+++-|..+..
T Consensus       153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~v~~  217 (283)
T PRK00811        153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVRP  217 (283)
T ss_pred             EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCCEEE
Confidence            999987544         35678999999999999976432    34466677777777877654

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.46  E-value=1.6e-12  Score=108.03  Aligned_cols=109  Identities=23%  Similarity=0.256  Sum_probs=86.7

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .++..+......+|||+|||+|.++..+++.. +..+++++|+++.+++.++++++.+++.  .++...|... .. .  
T Consensus       187 lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~-~~-~--  259 (342)
T PRK09489        187 LLLSTLTPHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFS-DI-K--  259 (342)
T ss_pred             HHHHhccccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEccccc-cc-C--
Confidence            35565655556699999999999999998874 5578999999999999999999988764  4566777753 22 2  


Q ss_pred             CCCCCEEEEeCCCh----------hchHHHHHhcccCCCEEEEEeCC
Q 026506          179 SGLADSIFLDLPQP----------WLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       179 ~~~~D~v~~~~~~~----------~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                       +.||+|++++|-+          +.+++.+.+.|+|||.++++...
T Consensus       260 -~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~  305 (342)
T PRK09489        260 -GRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (342)
T ss_pred             -CCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence             6799999987632          46789999999999999877654

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.46  E-value=2.3e-12  Score=105.73  Aligned_cols=113  Identities=25%  Similarity=0.252  Sum_probs=88.4

Q ss_pred             CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506          109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD  188 (237)
Q Consensus       109 ~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~  188 (237)
                      ..+|||+|||+|.++..++... +..+++++|+|+.+++.|++++..+++.+++++..+|+.+ .++.   +.||+|++|
T Consensus       134 ~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~---~~fDlIvsN  208 (307)
T PRK11805        134 VTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPG---RRYDLIVSN  208 (307)
T ss_pred             CCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCC---CCccEEEEC
Confidence            3689999999999999998875 5579999999999999999999988887679999999863 3433   579999998


Q ss_pred             CCCh------------------------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh
Q 026506          189 LPQP------------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL  228 (237)
Q Consensus       189 ~~~~------------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~  228 (237)
                      +|-.                              ..+++.+.+.|+|||.+++-.... + +.+.+.+.+
T Consensus       209 PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~-~~~~~~~~~  276 (307)
T PRK11805        209 PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-R-VHLEEAYPD  276 (307)
T ss_pred             CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-H-HHHHHHHhh
Confidence            6521                              235788889999999999755432 2 235455544

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.45  E-value=1.7e-12  Score=102.07  Aligned_cols=108  Identities=21%  Similarity=0.310  Sum_probs=85.4

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ++..+...++.+|||+|||+|..+..+++..+...+++++|+++.+++.++++..   ...++++..+|+.+..++.   
T Consensus        31 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~---  104 (223)
T TIGR01934        31 AVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFED---  104 (223)
T ss_pred             HHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCCC---
Confidence            4455556688999999999999999998886332689999999999999998765   2234888889987644433   


Q ss_pred             CCCCEEEEe-----CCChhchHHHHHhcccCCCEEEEEe
Q 026506          180 GLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       180 ~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +.||+|+..     .+++..+++++.+.|+|||++++..
T Consensus       105 ~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  143 (223)
T TIGR01934       105 NSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILE  143 (223)
T ss_pred             CcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence            679998753     4566788999999999999998754

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.45  E-value=1.9e-12  Score=104.15  Aligned_cols=105  Identities=23%  Similarity=0.285  Sum_probs=84.8

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .++..+...++.+|||+|||+|.++..++... +..+++++|+++.+++.++++.     .+ +.+..+|+... .+.  
T Consensus        22 ~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~-----~~-~~~~~~d~~~~-~~~--   91 (258)
T PRK01683         22 DLLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL-----PD-CQFVEADIASW-QPP--   91 (258)
T ss_pred             HHHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC-----CC-CeEEECchhcc-CCC--
Confidence            46667777889999999999999999998875 5579999999999999998863     23 77888888642 222  


Q ss_pred             CCCCCEEEEeC-----CChhchHHHHHhcccCCCEEEEEeC
Q 026506          179 SGLADSIFLDL-----PQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       179 ~~~~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                       ..||+|+.+.     +++..+++++.+.|+|||.+++..+
T Consensus        92 -~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~  131 (258)
T PRK01683         92 -QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMP  131 (258)
T ss_pred             -CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence             5799998754     3555789999999999999987654

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.43  E-value=3.9e-12  Score=97.70  Aligned_cols=113  Identities=27%  Similarity=0.432  Sum_probs=93.0

Q ss_pred             EEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC---CCCCCCCCCCCCEEEE
Q 026506          111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG---QGFPDEFSGLADSIFL  187 (237)
Q Consensus       111 ~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~~~~~~D~v~~  187 (237)
                      .+||||||.|.++..+|... |...++|+|++...+..+.+++...++.| +.+..+|+..   .-+++   +.+|.|++
T Consensus        20 l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~~~---~~v~~i~i   94 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDARELLRRLFPP---GSVDRIYI   94 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-CTTHHHHHSTT---TSEEEEEE
T ss_pred             eEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccHHHHHhhcccC---CchheEEE
Confidence            99999999999999999985 77999999999999999999999889888 9999999875   12233   78999999


Q ss_pred             eCCChh-------------chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh
Q 026506          188 DLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL  228 (237)
Q Consensus       188 ~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~  228 (237)
                      +.|+||             ++++.+.+.|+|||.+.+.+......+.+++.+.+
T Consensus        95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~  148 (195)
T PF02390_consen   95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEE  148 (195)
T ss_dssp             ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred             eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            999886             47999999999999999999988888888888887

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=99.41  E-value=5.5e-13  Score=101.72  Aligned_cols=130  Identities=19%  Similarity=0.152  Sum_probs=102.0

Q ss_pred             HHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CCcEEEEEccccC--CCCCCC
Q 026506          101 IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV-SSFVTVGVRDIQG--QGFPDE  177 (237)
Q Consensus       101 ~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~i~~~~~d~~~--~~~~~~  177 (237)
                      +....++.|.+|||.+.|-|+.++..+++  ++.+|+.+|-+|+.++.|+-|-...++ ...++++.+|..+  ..+++ 
T Consensus       127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D-  203 (287)
T COG2521         127 VELVKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDD-  203 (287)
T ss_pred             hheeccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCc-
Confidence            34556778999999999999999887776  446999999999999999876543332 2237889999876  45555 


Q ss_pred             CCCCCCEEEEeCCCh--------hchHHHHHhcccCCCEEEEEeCCHH-------HHHHHHHHHHh-cCccccc
Q 026506          178 FSGLADSIFLDLPQP--------WLAIPSAKKMLKQDGILCSFSPCIE-------QVQRSCESLRL-NFTGKES  235 (237)
Q Consensus       178 ~~~~~D~v~~~~~~~--------~~~l~~~~~~L~~gG~l~~~~~~~~-------~~~~~~~~l~~-~f~~v~~  235 (237)
                        ..||+|++|+|..        .++..++++.|+|||+++-|.....       ....+++.|++ ||..|+.
T Consensus       204 --~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~  275 (287)
T COG2521         204 --ESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKK  275 (287)
T ss_pred             --cccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeee
Confidence              7899999999843        3578899999999999998865433       35888999999 9986653

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.41  E-value=6.2e-12  Score=101.93  Aligned_cols=108  Identities=21%  Similarity=0.280  Sum_probs=82.8

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCC--CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAP--TGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      .+..+|||+|||+|.++..++.....  ...++++|+|+.+++.|+++.     .+ +.+..+|+.+.+++.   +.||+
T Consensus        84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~-~~~~~~d~~~lp~~~---~sfD~  154 (272)
T PRK11088         84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQ-VTFCVASSHRLPFAD---QSLDA  154 (272)
T ss_pred             CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CC-CeEEEeecccCCCcC---CceeE
Confidence            45678999999999999998877532  247999999999999998752     23 778888887655555   78999


Q ss_pred             EEEeCCChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHH
Q 026506          185 IFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCES  225 (237)
Q Consensus       185 v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~  225 (237)
                      |+.... + ..++++.+.|||||+++++.|....+.++.+.
T Consensus       155 I~~~~~-~-~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~  193 (272)
T PRK11088        155 IIRIYA-P-CKAEELARVVKPGGIVITVTPGPRHLFELKGL  193 (272)
T ss_pred             EEEecC-C-CCHHHHHhhccCCCEEEEEeCCCcchHHHHHH
Confidence            986443 2 36789999999999999998876555444333

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.40  E-value=1.5e-12  Score=103.14  Aligned_cols=112  Identities=17%  Similarity=0.181  Sum_probs=91.5

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC--
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE--  177 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~--  177 (237)
                      +...+...+..+|||+|++.|+.++.++..+++.++++++|.+++..+.|+++++..|+.+++++..+|+.+ .++..  
T Consensus        71 L~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e-~L~~l~~  149 (247)
T PLN02589         71 LNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP-VLDQMIE  149 (247)
T ss_pred             HHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH-HHHHHHh
Confidence            333445566789999999999999999998877789999999999999999999999988889999999875 12110  


Q ss_pred             ---CCCCCCEEEEeCC--ChhchHHHHHhcccCCCEEEEE
Q 026506          178 ---FSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       178 ---~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                         ..+.||+||+|..  .+..+++.+.+.|+|||.+++-
T Consensus       150 ~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~D  189 (247)
T PLN02589        150 DGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYD  189 (247)
T ss_pred             ccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEc
Confidence               1257999999875  3346788999999999998843

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.39  E-value=6.2e-12  Score=102.67  Aligned_cols=98  Identities=19%  Similarity=0.176  Sum_probs=78.1

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      .++.+|||+|||+|..+..++..   ..+|+++|+++.+++.+++++...++ + +++...|+....+ .   +.||+|+
T Consensus       119 ~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l-~-v~~~~~D~~~~~~-~---~~fD~I~  189 (287)
T PRK12335        119 VKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL-N-IRTGLYDINSASI-Q---EEYDFIL  189 (287)
T ss_pred             cCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC-c-eEEEEechhcccc-c---CCccEEE
Confidence            34569999999999999888875   36899999999999999999888776 3 8888888764333 2   6899998


Q ss_pred             EeCC-------ChhchHHHHHhcccCCCEEEEEe
Q 026506          187 LDLP-------QPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       187 ~~~~-------~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ....       ....+++++.+.|+|||+++++.
T Consensus       190 ~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~  223 (287)
T PRK12335        190 STVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC  223 (287)
T ss_pred             EcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            6432       23468999999999999976553

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.39  E-value=1.4e-11  Score=106.39  Aligned_cols=127  Identities=26%  Similarity=0.297  Sum_probs=94.0

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC--C
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD--E  177 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~--~  177 (237)
                      ++..+...++.+|||+|||+|.+++.++...   .+++++|+++++++.|++++..+++.+ +++..+|+.+. +..  .
T Consensus       289 vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~-v~~~~~d~~~~-l~~~~~  363 (443)
T PRK13168        289 ALEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDN-VTFYHANLEED-FTDQPW  363 (443)
T ss_pred             HHHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEeChHHh-hhhhhh
Confidence            5566677788999999999999999988773   689999999999999999999888876 99999998642 111  0


Q ss_pred             CCCCCCEEEEeCCCh--hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCccc
Q 026506          178 FSGLADSIFLDLPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGK  233 (237)
Q Consensus       178 ~~~~~D~v~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v  233 (237)
                      ....||+|++|+|..  .+.++.+.+ ++|++.+++.. ...++.+-+..|.+ +|.-.
T Consensus       364 ~~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvSC-np~tlaRDl~~L~~~gY~l~  420 (443)
T PRK13168        364 ALGGFDKVLLDPPRAGAAEVMQALAK-LGPKRIVYVSC-NPATLARDAGVLVEAGYRLK  420 (443)
T ss_pred             hcCCCCEEEECcCCcChHHHHHHHHh-cCCCeEEEEEe-ChHHhhccHHHHhhCCcEEE
Confidence            115699999999843  345544444 68887776444 34556666666655 66533

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=99.39  E-value=4.6e-12  Score=106.10  Aligned_cols=182  Identities=18%  Similarity=0.248  Sum_probs=113.3

Q ss_pred             CCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceE--EeccCcEE-EEECCCHHHHhhhcCCc-
Q 026506           13 TRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMV--FSNKGGFV-YLLAPTPELWTLVLSHR-   88 (237)
Q Consensus        13 ~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~-   88 (237)
                      ...|++||||.+.+..+        ||.|..|+.|..+.|..... +|...  ....|++. |...|....  ..++.. 
T Consensus        76 v~~~~vGdrV~~~~~~~--------cg~c~~c~~g~~~~c~~~~~-~g~~~~~~~~~G~~aey~~v~~~~~--~~~P~~l  144 (343)
T PRK09880         76 SSGLKEGQTVAINPSKP--------CGHCKYCLSHNENQCTTMRF-FGSAMYFPHVDGGFTRYKVVDTAQC--IPYPEKA  144 (343)
T ss_pred             CccCCCCCEEEECCCCC--------CcCChhhcCCChhhCCCcce-eecccccCCCCCceeeeEEechHHe--EECCCCC
Confidence            35799999999987666        89999999998777763211 12100  01245555 444443221  112211 


Q ss_pred             ----ccccccccHHH-HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcE
Q 026506           89 ----TQILYIADISF-VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFV  162 (237)
Q Consensus        89 ----~~~~~~~~~~~-~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i  162 (237)
                          .....+...+. .+......++++||..|+|+ |.++.++++..+ ..+++++|.+++.++.+++    +|.+..+
T Consensus       145 ~~~~aa~~~~~~~a~~al~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~----lGa~~vi  219 (343)
T PRK09880        145 DEKVMAFAEPLAVAIHAAHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE----MGADKLV  219 (343)
T ss_pred             CHHHHHhhcHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH----cCCcEEe
Confidence                11222322222 34445566899999999988 888888888863 3579999999999998876    4654323


Q ss_pred             EEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          163 TVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       163 ~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +....++.+  +... .+.+|+||.....+ ..++.+.+.|++||+++.++.
T Consensus       220 ~~~~~~~~~--~~~~-~g~~D~vid~~G~~-~~~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        220 NPQNDDLDH--YKAE-KGYFDVSFEVSGHP-SSINTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             cCCcccHHH--Hhcc-CCCCCEEEECCCCH-HHHHHHHHHhhcCCEEEEEcc
Confidence            322223221  1111 14599987655543 478899999999999998763

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.38  E-value=5.4e-12  Score=92.83  Aligned_cols=117  Identities=27%  Similarity=0.343  Sum_probs=92.0

Q ss_pred             CEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE---
Q 026506          110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF---  186 (237)
Q Consensus       110 ~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~---  186 (237)
                      .+|||+|||.|.+...+++. +-....+++|.++.+++.|+..+++.+.++.|.+.+.|+.+..+..   ++||+|.   
T Consensus        69 ~~VlDLGtGNG~~L~~L~~e-gf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~---~qfdlvlDKG  144 (227)
T KOG1271|consen   69 DRVLDLGTGNGHLLFQLAKE-GFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLS---GQFDLVLDKG  144 (227)
T ss_pred             cceeeccCCchHHHHHHHHh-cCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccc---cceeEEeecC
Confidence            39999999999999998876 3345699999999999999999999999888999999998644444   7788864   


Q ss_pred             ------EeCC----ChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCc
Q 026506          187 ------LDLP----QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT  231 (237)
Q Consensus       187 ------~~~~----~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~  231 (237)
                            +++.    ....++..+.+.|+|||++++.+ |.-...++.+...+ +|.
T Consensus       145 T~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS-CN~T~dELv~~f~~~~f~  199 (227)
T KOG1271|consen  145 TLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS-CNFTKDELVEEFENFNFE  199 (227)
T ss_pred             ceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe-cCccHHHHHHHHhcCCeE
Confidence                  1211    11346888899999999999554 66667778777776 554

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.37  E-value=2.1e-12  Score=100.38  Aligned_cols=97  Identities=24%  Similarity=0.318  Sum_probs=76.7

Q ss_pred             CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC-----cEEEEEccccCCCCCCCCCCCCC
Q 026506          109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS-----FVTVGVRDIQGQGFPDEFSGLAD  183 (237)
Q Consensus       109 ~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-----~i~~~~~d~~~~~~~~~~~~~~D  183 (237)
                      |.+|||+|||+|.++..+++.   .+.|+++|.++.+++.|++........+     ++++...|+..  ..    +.||
T Consensus        90 g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~--~~----~~fD  160 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG--LT----GKFD  160 (282)
T ss_pred             CceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh--cc----cccc
Confidence            588999999999999999988   3799999999999999999854433222     25555555543  22    5699


Q ss_pred             EEEE-----eCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          184 SIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       184 ~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .|++     +..++.++++.+.+.|||||++++-..
T Consensus       161 aVvcsevleHV~dp~~~l~~l~~~lkP~G~lfitti  196 (282)
T KOG1270|consen  161 AVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTI  196 (282)
T ss_pred             eeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeeh
Confidence            9975     566788899999999999999995543

>PRK06922 hypothetical protein; Provisional

Probab=99.37  E-value=7.7e-12  Score=109.76  Aligned_cols=106  Identities=18%  Similarity=0.237  Sum_probs=83.0

Q ss_pred             hcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC--CCCCCCC
Q 026506          103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--FPDEFSG  180 (237)
Q Consensus       103 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~  180 (237)
                      .++..++.+|||+|||+|..+..++... +..+++++|+++.+++.|+++....+  ..+++..+|..+.+  +++   +
T Consensus       413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fed---e  486 (677)
T PRK06922        413 ILDYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEK---E  486 (677)
T ss_pred             HhhhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCC---C
Confidence            4455578999999999999998888775 56899999999999999998865544  23778888886532  333   6


Q ss_pred             CCCEEEEeCC------------------ChhchHHHHHhcccCCCEEEEEeC
Q 026506          181 LADSIFLDLP------------------QPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       181 ~~D~v~~~~~------------------~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .||+|+.+..                  ....+++++.+.|||||.+++...
T Consensus       487 SFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        487 SVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             CEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            8999986521                  224679999999999999998754

>PLN02366 spermidine synthase

Probab=99.36  E-value=2.3e-11  Score=99.54  Aligned_cols=126  Identities=17%  Similarity=0.248  Sum_probs=93.0

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEccccCCCCCCCCCCCCC
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG--V-SSFVTVGVRDIQGQGFPDEFSGLAD  183 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~~~~~~~~~~D  183 (237)
                      ..+.+||++|+|.|.++..++++ .+..+++.+|+++..++.+++.+...+  . +.+++++.+|.... +.....+.||
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~-l~~~~~~~yD  167 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEF-LKNAPEGTYD  167 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHH-HhhccCCCCC
Confidence            44689999999999999988876 344789999999999999999876432  2 34699999997641 1111126799


Q ss_pred             EEEEeCCCh---------hchHHHHHhcccCCCEEEEEeCC----HHHHHHHHHHHHhcC-cccc
Q 026506          184 SIFLDLPQP---------WLAIPSAKKMLKQDGILCSFSPC----IEQVQRSCESLRLNF-TGKE  234 (237)
Q Consensus       184 ~v~~~~~~~---------~~~l~~~~~~L~~gG~l~~~~~~----~~~~~~~~~~l~~~f-~~v~  234 (237)
                      +|++|..++         .++++.+.+.|+|||+++..+..    ......+.+.+++.| ..+.
T Consensus       168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v~  232 (308)
T PLN02366        168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVN  232 (308)
T ss_pred             EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHCCCcee
Confidence            999987653         25789999999999999864332    344566777777767 3443

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.35  E-value=3e-12  Score=116.03  Aligned_cols=119  Identities=20%  Similarity=0.150  Sum_probs=91.3

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS-SFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      .++.+|||+|||+|.+++.++..  +..+|+++|+|+.+++.|++|++.+++. +++++..+|+.+. +.. ..+.||+|
T Consensus       537 ~~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~-l~~-~~~~fDlI  612 (702)
T PRK11783        537 AKGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAW-LKE-AREQFDLI  612 (702)
T ss_pred             cCCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHH-HHH-cCCCcCEE
Confidence            35789999999999999988875  4468999999999999999999999886 4699999998741 111 12679999


Q ss_pred             EEeCCCh----------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cC
Q 026506          186 FLDLPQP----------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NF  230 (237)
Q Consensus       186 ~~~~~~~----------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f  230 (237)
                      ++|+|..                ..++..+.+.|+|||.+++. .+........+.+.+ +|
T Consensus       613 ilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~-~~~~~~~~~~~~~~~~g~  673 (702)
T PRK11783        613 FIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS-NNKRGFKMDEEGLAKLGL  673 (702)
T ss_pred             EECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE-eCCccCChhHHHHHhCCC
Confidence            9998831                23677889999999998754 444444444566655 44

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.35  E-value=1.4e-12  Score=89.70  Aligned_cols=91  Identities=24%  Similarity=0.354  Sum_probs=69.1

Q ss_pred             EEEEccCccHHHHHHHHHh--CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeC
Q 026506          112 VLESGTGSGSLTTSLARAV--APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDL  189 (237)
Q Consensus       112 vldiG~G~G~~~~~~~~~~--~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~  189 (237)
                      |||+|||+|..+..+++.+  ++..+++++|+++++++.++++....+.  .+++.+.|+.+.....   +.||+|+...
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~---~~~D~v~~~~   75 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSD---GKFDLVVCSG   75 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHS---SSEEEEEE-T
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccC---CCeeEEEEcC
Confidence            7999999999999999886  3347999999999999999999877655  3889999997633333   6899998832


Q ss_pred             C-----C---hhchHHHHHhcccCCC
Q 026506          190 P-----Q---PWLAIPSAKKMLKQDG  207 (237)
Q Consensus       190 ~-----~---~~~~l~~~~~~L~~gG  207 (237)
                      .     .   ...+++++.+.|+|||
T Consensus        76 ~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   76 LSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             TGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             CccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            2     1   1357999999999997

>TIGR00417 speE spermidine synthase

Probab=99.35  E-value=1.7e-11  Score=99.25  Aligned_cols=124  Identities=19%  Similarity=0.177  Sum_probs=89.7

Q ss_pred             CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG--V-SSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       109 ~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      +.+||++|||+|.++..+++.. +..+++++|+++++++.+++++...+  . ..++++..+|..+ .+. ...+.||+|
T Consensus        73 p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~-~l~-~~~~~yDvI  149 (270)
T TIGR00417        73 PKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFK-FLA-DTENTFDVI  149 (270)
T ss_pred             CCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHH-HHH-hCCCCccEE
Confidence            4599999999999988887763 35789999999999999999875432  1 2347888888754 111 112689999


Q ss_pred             EEeCCCh---------hchHHHHHhcccCCCEEEEEeCC----HHHHHHHHHHHHhcCccccc
Q 026506          186 FLDLPQP---------WLAIPSAKKMLKQDGILCSFSPC----IEQVQRSCESLRLNFTGKES  235 (237)
Q Consensus       186 ~~~~~~~---------~~~l~~~~~~L~~gG~l~~~~~~----~~~~~~~~~~l~~~f~~v~~  235 (237)
                      ++|.+.+         .++++.+.+.|+|||++++.+..    ......+.+.+++.|..+..
T Consensus       150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~  212 (270)
T TIGR00417       150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITEY  212 (270)
T ss_pred             EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEE
Confidence            9987532         35678999999999999976543    23345555566666887754

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.35  E-value=6.4e-12  Score=102.31  Aligned_cols=118  Identities=22%  Similarity=0.204  Sum_probs=97.7

Q ss_pred             cccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-c
Q 026506           90 QILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-D  168 (237)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~-d  168 (237)
                      ..+.|..+..++..+.+++|+.|||-.||||++.+.....   +.+++|.|++..+++-|+.|++..++.+ ..+... |
T Consensus       179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~D  254 (347)
T COG1041         179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLD  254 (347)
T ss_pred             CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecc
Confidence            4455666666888899999999999999999999776654   4799999999999999999999998777 555544 9


Q ss_pred             ccCCCCCCCCCCCCCEEEEeCCC--------------hhchHHHHHhcccCCCEEEEEeC
Q 026506          169 IQGQGFPDEFSGLADSIFLDLPQ--------------PWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       169 ~~~~~~~~~~~~~~D~v~~~~~~--------------~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +...+++.   ..+|.|+.|+|-              ..++++.+.+.|++||++++.+|
T Consensus       255 a~~lpl~~---~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         255 ATNLPLRD---NSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             cccCCCCC---CccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence            88766654   469999999871              13579999999999999999998

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.35  E-value=2.9e-13  Score=92.81  Aligned_cols=94  Identities=22%  Similarity=0.276  Sum_probs=60.0

Q ss_pred             EEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe----
Q 026506          113 LESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD----  188 (237)
Q Consensus       113 ldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~----  188 (237)
                      ||+|||+|.++..+++.. +..+++++|+|+.+++.+++++......+ ......+..+. ......+.||+|+..    
T Consensus         1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~fD~V~~~~vl~   77 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDL-FDYDPPESFDLVVASNVLH   77 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS----CCC----SEEEEE-TTS
T ss_pred             CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCCh-hhcccccccceehhhhhHh
Confidence            799999999999999886 56899999999999999988887766443 33333333221 111111589999853    


Q ss_pred             -CCChhchHHHHHhcccCCCEE
Q 026506          189 -LPQPWLAIPSAKKMLKQDGIL  209 (237)
Q Consensus       189 -~~~~~~~l~~~~~~L~~gG~l  209 (237)
                       .++...+++++.+.|+|||+|
T Consensus        78 ~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   78 HLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             --S-HHHHHHHHTTT-TSS-EE
T ss_pred             hhhhHHHHHHHHHHHcCCCCCC
Confidence             356668999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.35  E-value=1.2e-11  Score=104.58  Aligned_cols=119  Identities=20%  Similarity=0.115  Sum_probs=86.6

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccCC--CCCCCCCCCCC
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS-SFVTVGVRDIQGQ--GFPDEFSGLAD  183 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~--~~~~~~~~~~D  183 (237)
                      .++.+|||+|||+|.+++..+.  ++..+|+++|+++.+++.|++|+..+++. .++++..+|+.+.  .+.. ..+.||
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~-~~~~fD  295 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD-RGEKFD  295 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHh-cCCCCC
Confidence            4678999999999999876553  34569999999999999999999999885 3589999998751  1110 125799


Q ss_pred             EEEEeCCCh--------------hchHHHHHhcccCCCEEEEEeCCH-HHHHHHHHHHHh
Q 026506          184 SIFLDLPQP--------------WLAIPSAKKMLKQDGILCSFSPCI-EQVQRSCESLRL  228 (237)
Q Consensus       184 ~v~~~~~~~--------------~~~l~~~~~~L~~gG~l~~~~~~~-~~~~~~~~~l~~  228 (237)
                      +|++|+|..              ..++..+.+.|+|||.++..+-+. -+.+.+.+.+.+
T Consensus       296 lVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~  355 (396)
T PRK15128        296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIAD  355 (396)
T ss_pred             EEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHH
Confidence            999998842              134556789999999999665221 223444444443

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.34  E-value=2.2e-11  Score=96.59  Aligned_cols=106  Identities=22%  Similarity=0.248  Sum_probs=83.4

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      ..+.+|||+|||+|.++..++... +..+++++|+++.+++.++++..    . ++.+..+|+.+..++.   +.||+|+
T Consensus        33 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~----~-~~~~~~~d~~~~~~~~---~~fD~vi  103 (240)
T TIGR02072        33 FIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS----E-NVQFICGDAEKLPLED---SSFDLIV  103 (240)
T ss_pred             CCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC----C-CCeEEecchhhCCCCC---CceeEEE
Confidence            345799999999999999998875 55789999999999999988643    2 3788889987655444   6799998


Q ss_pred             EeC-----CChhchHHHHHhcccCCCEEEEEeCCHHHHHH
Q 026506          187 LDL-----PQPWLAIPSAKKMLKQDGILCSFSPCIEQVQR  221 (237)
Q Consensus       187 ~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~  221 (237)
                      .+.     .++..+++++.+.|+|||.+++..+......+
T Consensus       104 ~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~  143 (240)
T TIGR02072       104 SNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLHE  143 (240)
T ss_pred             EhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCHHH
Confidence            753     35567899999999999999987655444333

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.33  E-value=6.2e-12  Score=94.50  Aligned_cols=123  Identities=24%  Similarity=0.173  Sum_probs=85.9

Q ss_pred             hcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCC
Q 026506          103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA  182 (237)
Q Consensus       103 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  182 (237)
                      .+....-.++||+|||.|.++..++.+.   .+++++|+++.+++.|++++..  .++ +++...|+.+ .+|.   ++|
T Consensus        38 aLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~--~~~-V~~~~~dvp~-~~P~---~~F  107 (201)
T PF05401_consen   38 ALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG--LPH-VEWIQADVPE-FWPE---GRF  107 (201)
T ss_dssp             HHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---SS-EEEEES-TTT----S---S-E
T ss_pred             hcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC--CCC-eEEEECcCCC-CCCC---CCe
Confidence            3555556799999999999999999885   6899999999999999998753  345 9999999974 4555   889


Q ss_pred             CEEEEeCC--------ChhchHHHHHhcccCCCEEEEEeCCHHH---------HHHHHHHHHhcCccccc
Q 026506          183 DSIFLDLP--------QPWLAIPSAKKMLKQDGILCSFSPCIEQ---------VQRSCESLRLNFTGKES  235 (237)
Q Consensus       183 D~v~~~~~--------~~~~~l~~~~~~L~~gG~l~~~~~~~~~---------~~~~~~~l~~~f~~v~~  235 (237)
                      |+|++.--        .-..++..+...|+|||.+++-......         .+.+.+.+.+.+.+|+.
T Consensus       108 DLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~  177 (201)
T PF05401_consen  108 DLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVER  177 (201)
T ss_dssp             EEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEE
T ss_pred             eEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeE
Confidence            99986421        2235788999999999999976543322         35555666666666553

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.33  E-value=2.3e-11  Score=102.83  Aligned_cols=103  Identities=23%  Similarity=0.311  Sum_probs=81.3

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .++..+.+.++.+|||+|||+|.++..+++..  ..+|+++|+|+++++.|+++..  +. + +++...|..+  + .  
T Consensus       158 ~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l-~-v~~~~~D~~~--l-~--  226 (383)
T PRK11705        158 LICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL-P-VEIRLQDYRD--L-N--  226 (383)
T ss_pred             HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC-e-EEEEECchhh--c-C--
Confidence            35567788999999999999999999888774  3689999999999999999874  22 2 7777788753  2 2  


Q ss_pred             CCCCCEEEEeC-----C--ChhchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFLDL-----P--QPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~~-----~--~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                       +.||.|+...     +  ....+++.+.+.|||||++++..
T Consensus       227 -~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        227 -GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             -CCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence             6799987532     1  22468999999999999998754

>PRK01581 speE spermidine synthase; Validated

Probab=99.33  E-value=2.3e-11  Score=100.29  Aligned_cols=123  Identities=21%  Similarity=0.181  Sum_probs=87.4

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH--H---HcC-CCCcEEEEEccccCCCCCCCCCCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDF--E---RTG-VSSFVTVGVRDIQGQGFPDEFSGL  181 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~--~---~~~-~~~~i~~~~~d~~~~~~~~~~~~~  181 (237)
                      ...+||++|||.|..+..+++. .+..+++++|+++++++.|++..  .   ... -+.++++..+|+.+  +.....+.
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~--fL~~~~~~  226 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKE--FLSSPSSL  226 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHH--HHHhcCCC
Confidence            3469999999999988777775 34579999999999999999731  1   111 13569999999975  21112267


Q ss_pred             CCEEEEeCCCh----------hchHHHHHhcccCCCEEEEEeCCHHHH----HHHHHHHHhcCccc
Q 026506          182 ADSIFLDLPQP----------WLAIPSAKKMLKQDGILCSFSPCIEQV----QRSCESLRLNFTGK  233 (237)
Q Consensus       182 ~D~v~~~~~~~----------~~~l~~~~~~L~~gG~l~~~~~~~~~~----~~~~~~l~~~f~~v  233 (237)
                      ||+|++|.+++          .++++.+.+.|+|||++++.+.+....    ..+.+.+++.|..+
T Consensus       227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v  292 (374)
T PRK01581        227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTV  292 (374)
T ss_pred             ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCce
Confidence            99999998765          247899999999999998775443322    33455566544433

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.32  E-value=3.5e-11  Score=91.35  Aligned_cols=105  Identities=21%  Similarity=0.179  Sum_probs=79.2

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      +++..+..++.++||+|||.|..+..++++   +-.|+++|.|+..++.+++.++..+++  ++....|+.+..++    
T Consensus        22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~----   92 (192)
T PF03848_consen   22 VLEAVPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFP----   92 (192)
T ss_dssp             HHHHCTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-T----
T ss_pred             HHHHHhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcccc----
Confidence            455556566789999999999999999987   478999999999999999888877765  88899998764443    


Q ss_pred             CCCCEEEEeC-------CChhchHHHHHhcccCCCEEEEEe
Q 026506          180 GLADSIFLDL-------PQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       180 ~~~D~v~~~~-------~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +.||+|+...       +.....++++...++|||++++..
T Consensus        93 ~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~  133 (192)
T PF03848_consen   93 EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT  133 (192)
T ss_dssp             TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence            5799987532       222357888999999999987643

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.31  E-value=4e-11  Score=92.21  Aligned_cols=103  Identities=13%  Similarity=0.097  Sum_probs=76.3

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      .++.+|||+|||+|.+++.++...  ..+|+++|.++++++.+++|++.++..+ +++..+|+.+ .++. ....||+|+
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~~-v~~~~~D~~~-~l~~-~~~~fDlV~  126 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAGN-ARVVNTNALS-FLAQ-PGTPHNVVF  126 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCCc-EEEEEchHHH-HHhh-cCCCceEEE
Confidence            467899999999999998655542  4799999999999999999999888765 9999999874 2221 114699999


Q ss_pred             EeCCChhch----HHHHHh--cccCCCEEEEEeC
Q 026506          187 LDLPQPWLA----IPSAKK--MLKQDGILCSFSP  214 (237)
Q Consensus       187 ~~~~~~~~~----l~~~~~--~L~~gG~l~~~~~  214 (237)
                      +|+|-....    ++.+..  .|+|++.+++-..
T Consensus       127 ~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~  160 (199)
T PRK10909        127 VDPPFRKGLLEETINLLEDNGWLADEALIYVESE  160 (199)
T ss_pred             ECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence            999933223    333333  2577887775544

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=99.29  E-value=3.1e-11  Score=99.63  Aligned_cols=113  Identities=31%  Similarity=0.506  Sum_probs=94.5

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC-C
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE-F  178 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~  178 (237)
                      .+..+++++|.+|||+++.+|+-+.++|..+...+.|++.|.+.+++...++++.++|+.+ ..+...|..+  ++.. .
T Consensus       233 pv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~e--f~~~~~  309 (460)
T KOG1122|consen  233 PVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGRE--FPEKEF  309 (460)
T ss_pred             eeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCccc--cccccc
Confidence            4456789999999999999999999999999888999999999999999999999999887 5556666653  4321 2


Q ss_pred             CCCCCEEEEeCCCh---------------------------hchHHHHHhcccCCCEEEEEeCCH
Q 026506          179 SGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       179 ~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                      .++||.|++|+|+.                           .++|.++.+++++||+|+ |++|.
T Consensus       310 ~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLV-YSTCS  373 (460)
T KOG1122|consen  310 PGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLV-YSTCS  373 (460)
T ss_pred             CcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEE-EEeee
Confidence            24799999998844                           257888999999999998 88876

>PLN02823 spermine synthase

Probab=99.29  E-value=4.9e-11  Score=98.64  Aligned_cols=126  Identities=18%  Similarity=0.145  Sum_probs=94.2

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG---VSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      ...+||.+|+|.|..+..+++.. +..+++++|++++.++.+++.+...+   .+.+++++.+|...  +-....++||+
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~--~L~~~~~~yDv  179 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARA--ELEKRDEKFDV  179 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHH--HHhhCCCCccE
Confidence            34799999999999998888763 44789999999999999999875432   13569999999875  21222368999


Q ss_pred             EEEeCCCh-----------hchHH-HHHhcccCCCEEEEEeCC------HHHHHHHHHHHHhcCcccccc
Q 026506          185 IFLDLPQP-----------WLAIP-SAKKMLKQDGILCSFSPC------IEQVQRSCESLRLNFTGKESC  236 (237)
Q Consensus       185 v~~~~~~~-----------~~~l~-~~~~~L~~gG~l~~~~~~------~~~~~~~~~~l~~~f~~v~~~  236 (237)
                      |++|..++           .++++ .+.+.|+|||++++...+      ......+.+.+++.|+.+..+
T Consensus       180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~~v~~y  249 (336)
T PLN02823        180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFKYVVPY  249 (336)
T ss_pred             EEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCCCEEEE
Confidence            99986543           24677 889999999999866432      334566777777778876553

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.29  E-value=1.3e-10  Score=92.99  Aligned_cols=105  Identities=18%  Similarity=0.141  Sum_probs=73.6

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      +...+..-.|.+|||||||.|+.+..++..  +...|+|+|.++......+..-.-.+.+..+......+.+  ++.  .
T Consensus       107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~--Lp~--~  180 (315)
T PF08003_consen  107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVED--LPN--L  180 (315)
T ss_pred             HHhhhCCcCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhh--ccc--c
Confidence            444454567899999999999999888877  4578999999887655543322223433323333223322  333  2


Q ss_pred             CCCCEEEE-----eCCChhchHHHHHhcccCCCEEE
Q 026506          180 GLADSIFL-----DLPQPWLAIPSAKKMLKQDGILC  210 (237)
Q Consensus       180 ~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~  210 (237)
                      +.||+||+     +..+|...|.++.+.|++||.++
T Consensus       181 ~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLv  216 (315)
T PF08003_consen  181 GAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELV  216 (315)
T ss_pred             CCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEE
Confidence            78999985     55678889999999999999998

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=99.29  E-value=3.3e-11  Score=98.15  Aligned_cols=182  Identities=16%  Similarity=0.098  Sum_probs=107.6

Q ss_pred             CCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceE----EeccCcEE-EEECCCHHHHhhhcCCc-
Q 026506           15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMV----FSNKGGFV-YLLAPTPELWTLVLSHR-   88 (237)
Q Consensus        15 ~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~-   88 (237)
                      .+++||||++.+..+        ||.|.+|+.|..+.|..... +|...    ....|+|. |...|... ....++.. 
T Consensus        25 ~~~~GdrV~~~~~~~--------cg~C~~C~~g~~~~C~~~~~-~g~~~~~~~~~~~G~~aey~~v~~~~-~~~~lP~~~   94 (280)
T TIGR03366        25 PLRLGQRVVWSVTVP--------CGRCFRCRRGLPQKCDSLRK-YGHEALDSGWPLSGGYAEHCHLPAGT-AIVPVPDDL   94 (280)
T ss_pred             CCCCCCEEEEcCCCC--------CCCChhhhCcCcccCCChhh-cCcccccCCccccccceeeEEecCCC-cEEECCCCC
Confidence            699999999887666        99999999998888864221 12110    01235544 33444321 11111111 


Q ss_pred             ----ccccccc-cH-HHHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 026506           89 ----TQILYIA-DI-SFVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSF  161 (237)
Q Consensus        89 ----~~~~~~~-~~-~~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~  161 (237)
                          ...+... .. ...+......++++||.+|+|+ |.++.++++..+ ..+++++|.++++++.+++    .|.+..
T Consensus        95 ~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~  169 (280)
T TIGR03366        95 PDAVAAPAGCATATVMAALEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAG-AARVVAADPSPDRRELALS----FGATAL  169 (280)
T ss_pred             CHHHhhHhhhHHHHHHHHHHhccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCcEe
Confidence                1111100 00 1133445566899999999988 778888888763 3458999999999888877    454332


Q ss_pred             EEEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          162 VTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       162 i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ++..  +..+..........+|+++.....+ ..++.+.+.|+++|+++.++.
T Consensus       170 i~~~--~~~~~~~~~~~~~g~d~vid~~G~~-~~~~~~~~~l~~~G~iv~~G~  219 (280)
T TIGR03366       170 AEPE--VLAERQGGLQNGRGVDVALEFSGAT-AAVRACLESLDVGGTAVLAGS  219 (280)
T ss_pred             cCch--hhHHHHHHHhCCCCCCEEEECCCCh-HHHHHHHHHhcCCCEEEEecc
Confidence            2211  1100000000114699977655443 378899999999999998773

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.29  E-value=1.5e-10  Score=90.42  Aligned_cols=113  Identities=20%  Similarity=0.325  Sum_probs=95.3

Q ss_pred             CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC--CCCCCCCCCCCCEEE
Q 026506          109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLADSIF  186 (237)
Q Consensus       109 ~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~~~~D~v~  186 (237)
                      ...+||||||.|.+...+|.. .|...++|+|+....+..|.+.+...++.| +.+...|+..  ..+.+  .++.|-|+
T Consensus        49 ~pi~lEIGfG~G~~l~~~A~~-nP~~nfiGiEi~~~~v~~~l~k~~~~~l~N-lri~~~DA~~~l~~~~~--~~sl~~I~  124 (227)
T COG0220          49 APIVLEIGFGMGEFLVEMAKK-NPEKNFLGIEIRVPGVAKALKKIKELGLKN-LRLLCGDAVEVLDYLIP--DGSLDKIY  124 (227)
T ss_pred             CcEEEEECCCCCHHHHHHHHH-CCCCCEEEEEEehHHHHHHHHHHHHcCCCc-EEEEcCCHHHHHHhcCC--CCCeeEEE
Confidence            358999999999999999998 478899999999999999999999999875 9999999876  22333  15899999


Q ss_pred             EeCCChh-------------chHHHHHhcccCCCEEEEEeCCHHHHHHHHHH
Q 026506          187 LDLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCES  225 (237)
Q Consensus       187 ~~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~  225 (237)
                      ++-|+||             .+++.+.+.|+|||.|.+-+...+..+..+..
T Consensus       125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~  176 (227)
T COG0220         125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLE  176 (227)
T ss_pred             EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHH
Confidence            9999997             47999999999999999888777766663333

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.28  E-value=2.5e-11  Score=91.16  Aligned_cols=121  Identities=17%  Similarity=0.176  Sum_probs=87.4

Q ss_pred             hcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCC
Q 026506          103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA  182 (237)
Q Consensus       103 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  182 (237)
                      ++.......+||+|||||......- . .+..+|+.+|+++.|-+.+.+.+......+...+..++..+  ++....+++
T Consensus        71 ~~gk~~K~~vLEvgcGtG~Nfkfy~-~-~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~--l~~l~d~s~  146 (252)
T KOG4300|consen   71 FLGKSGKGDVLEVGCGTGANFKFYP-W-KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGEN--LPQLADGSY  146 (252)
T ss_pred             HhcccCccceEEecccCCCCccccc-C-CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhc--CcccccCCe
Confidence            3344444578999999998763322 2 25689999999999999999988877555533488888876  332223899


Q ss_pred             CEEEE-----eCCChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHH
Q 026506          183 DSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLR  227 (237)
Q Consensus       183 D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~  227 (237)
                      |.|+.     ...++.+.|++..++|+|||+++++.....+-..|...+.
T Consensus       147 DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q  196 (252)
T KOG4300|consen  147 DTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQ  196 (252)
T ss_pred             eeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHH
Confidence            99863     4567788999999999999999988765555444444433

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=99.28  E-value=1.2e-11  Score=100.49  Aligned_cols=125  Identities=29%  Similarity=0.413  Sum_probs=98.8

Q ss_pred             ccccccHH--HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q 026506           91 ILYIADIS--FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD  168 (237)
Q Consensus        91 ~~~~~~~~--~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d  168 (237)
                      .++.++.+  .....+.+.+++.|||+++++|+-+.+++..+...+.+++.|+++.++...++++.+.|..+ +.+...|
T Consensus        66 ~~~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D  144 (283)
T PF01189_consen   66 LFYVQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINAD  144 (283)
T ss_dssp             SEEEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESH
T ss_pred             cEEecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeec
Confidence            34444433  35567789999999999999999999999998767899999999999999999999999887 7777777


Q ss_pred             ccCCCCCCCCCCCCCEEEEeCCCh---------------------------hchHHHHHhcc----cCCCEEEEEeCCHH
Q 026506          169 IQGQGFPDEFSGLADSIFLDLPQP---------------------------WLAIPSAKKML----KQDGILCSFSPCIE  217 (237)
Q Consensus       169 ~~~~~~~~~~~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L----~~gG~l~~~~~~~~  217 (237)
                      .... .+......||.|++|+|+.                           .+.|+.+.+.+    ||||+++ |++|.-
T Consensus       145 ~~~~-~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lv-YsTCS~  222 (283)
T PF01189_consen  145 ARKL-DPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLV-YSTCSL  222 (283)
T ss_dssp             HHHH-HHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEE-EEESHH
T ss_pred             cccc-cccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEE-EEeccH
Confidence            7641 0111113599999998854                           24789999999    9999999 998874


Q ss_pred             H
Q 026506          218 Q  218 (237)
Q Consensus       218 ~  218 (237)
                      .
T Consensus       223 ~  223 (283)
T PF01189_consen  223 S  223 (283)
T ss_dssp             H
T ss_pred             H
Confidence            3

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=99.28  E-value=4.4e-11  Score=101.88  Aligned_cols=188  Identities=18%  Similarity=0.140  Sum_probs=113.1

Q ss_pred             CCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccC-----CCCceE-EeccCcEE-EEECCCHHHHhhhc
Q 026506           13 TRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGK-----PFGSMV-FSNKGGFV-YLLAPTPELWTLVL   85 (237)
Q Consensus        13 ~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~g~~~-~~~~~~~~-~~~~~~~~~~~~~~   85 (237)
                      ...|++||||++.+..+        ||.|.+|+.|..+.|.....     .+|... ....|+|. |...|..+.....+
T Consensus        80 V~~~~vGdrV~~~~~~~--------Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~l~~v  151 (393)
T TIGR02819        80 VEFIKIGDIVSVPFNIA--------CGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGWVGGQSEYVMVPYADFNLLKF  151 (393)
T ss_pred             cccccCCCEEEEecccC--------CCCChHHHCcCcccCcCCCCCCccceecccccCCCCCceEEEEEechhhCceEEC
Confidence            45799999999987666        99999999999988874211     011100 01135555 55555322111112


Q ss_pred             CCc----------ccccccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026506           86 SHR----------TQILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDF  153 (237)
Q Consensus        86 ~~~----------~~~~~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~  153 (237)
                      +..          ..+..+...+ ..+....+.++++||..|+|+ |.++.++++..+ ...++++|.++++++.+++  
T Consensus       152 P~~~~~~~~~~~~a~l~~~~~ta~~a~~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~~--  228 (393)
T TIGR02819       152 PDRDQALEKIRDLTMLSDIFPTGYHGAVTAGVGPGSTVYIAGAGPVGLAAAASAQLLG-AAVVIVGDLNPARLAQARS--  228 (393)
T ss_pred             CCcccccccccceeeeccHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHH--
Confidence            211          1111111111 123445678999999999988 777888888764 3556778888989998887  


Q ss_pred             HHcCCCCcEEEEE-ccccCCCCCC-CCCCCCCEEEEeCCChh-------------chHHHHHhcccCCCEEEEEeCC
Q 026506          154 ERTGVSSFVTVGV-RDIQGQGFPD-EFSGLADSIFLDLPQPW-------------LAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       154 ~~~~~~~~i~~~~-~d~~~~~~~~-~~~~~~D~v~~~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                        .|... +.... .+..+ .+.. ....++|+++.....+.             .+++.+.+.+++||++++++..
T Consensus       229 --~Ga~~-v~~~~~~~~~~-~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~  301 (393)
T TIGR02819       229 --FGCET-VDLSKDATLPE-QIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY  301 (393)
T ss_pred             --cCCeE-EecCCcccHHH-HHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence              46431 22111 11111 0111 11146999886655442             4899999999999999987753

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.28  E-value=9.3e-11  Score=101.13  Aligned_cols=125  Identities=21%  Similarity=0.254  Sum_probs=92.5

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC--C
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD--E  177 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~--~  177 (237)
                      +.+.+.+.++.+|||+|||+|.++..++...   .+|+++|+++++++.|++|+..+++.+ +++..+|+.+. ++.  .
T Consensus       284 ~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~n-v~~~~~d~~~~-l~~~~~  358 (431)
T TIGR00479       284 ALEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIAN-VEFLAGTLETV-LPKQPW  358 (431)
T ss_pred             HHHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCc-eEEEeCCHHHH-HHHHHh
Confidence            4455567788999999999999999988763   689999999999999999999888866 99999998641 111  0


Q ss_pred             CCCCCCEEEEeCCCh---hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCc
Q 026506          178 FSGLADSIFLDLPQP---WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT  231 (237)
Q Consensus       178 ~~~~~D~v~~~~~~~---~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~  231 (237)
                      ....||+|++|+|..   ..+++.+. .++|++.+++. -....+.+-++.+.+ +|.
T Consensus       359 ~~~~~D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyvs-c~p~tlard~~~l~~~gy~  414 (431)
T TIGR00479       359 AGQIPDVLLLDPPRKGCAAEVLRTII-ELKPERIVYVS-CNPATLARDLEFLCKEGYG  414 (431)
T ss_pred             cCCCCCEEEECcCCCCCCHHHHHHHH-hcCCCEEEEEc-CCHHHHHHHHHHHHHCCee
Confidence            114699999999853   34555444 57888766533 234556666777766 664

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.27  E-value=1.1e-10  Score=88.01  Aligned_cols=103  Identities=24%  Similarity=0.254  Sum_probs=79.1

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .+++.+++.++++|||+|||+|.++..+++.   ..+++++|+++.+++.+++++..  . .++++..+|+.+..++.  
T Consensus         4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~--~-~~v~ii~~D~~~~~~~~--   75 (169)
T smart00650        4 KIVRAANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA--A-DNLTVIHGDALKFDLPK--   75 (169)
T ss_pred             HHHHhcCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc--C-CCEEEEECchhcCCccc--
Confidence            4677788888999999999999999999887   36899999999999999998753  2 34899999998654443  


Q ss_pred             CCCCCEEEEeCCCh--hchHHHHHhcc--cCCCEEE
Q 026506          179 SGLADSIFLDLPQP--WLAIPSAKKML--KQDGILC  210 (237)
Q Consensus       179 ~~~~D~v~~~~~~~--~~~l~~~~~~L--~~gG~l~  210 (237)
                       ..+|.|+.|+|-.  ...+..+.+..  .++|.++
T Consensus        76 -~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~  110 (169)
T smart00650       76 -LQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLM  110 (169)
T ss_pred             -cCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEE
Confidence             4699999998744  24555555433  3566665

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=7.7e-11  Score=86.75  Aligned_cols=119  Identities=18%  Similarity=0.257  Sum_probs=97.1

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      .....++|||||+|..+.+++..+++...+.++|+||.+++..++.+..++..  ++.+..|+. ..+..   ++.|+++
T Consensus        42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~--~~~V~tdl~-~~l~~---~~VDvLv  115 (209)
T KOG3191|consen   42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH--IDVVRTDLL-SGLRN---ESVDVLV  115 (209)
T ss_pred             cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc--cceeehhHH-hhhcc---CCccEEE
Confidence            33678999999999999999999888888999999999999999988877743  788889987 44544   7899999


Q ss_pred             EeCCCh--------------------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCc
Q 026506          187 LDLPQP--------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT  231 (237)
Q Consensus       187 ~~~~~~--------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~  231 (237)
                      .|+|--                          ..++.++-..|+|.|.++++.......+++++.++. +|.
T Consensus       116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~  187 (209)
T KOG3191|consen  116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYG  187 (209)
T ss_pred             ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccc
Confidence            887610                          135666778889999999888766777888888888 775

>PRK03612 spermidine synthase; Provisional

Probab=99.27  E-value=3.2e-11  Score=105.91  Aligned_cols=121  Identities=21%  Similarity=0.205  Sum_probs=89.6

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH--HHHc---CC-CCcEEEEEccccCCCCCCCCCC
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASARED--FERT---GV-SSFVTVGVRDIQGQGFPDEFSG  180 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~--~~~~---~~-~~~i~~~~~d~~~~~~~~~~~~  180 (237)
                      +++.+|||+|||+|..+..++++ ++..+++++|+++++++.++++  +...   .. +.+++++.+|..+  +.....+
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~--~l~~~~~  372 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN--WLRKLAE  372 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH--HHHhCCC
Confidence            45679999999999999888865 2337999999999999999984  2211   11 2458999999875  1111126


Q ss_pred             CCCEEEEeCCChh----------chHHHHHhcccCCCEEEEEeC----CHHHHHHHHHHHHh-cC
Q 026506          181 LADSIFLDLPQPW----------LAIPSAKKMLKQDGILCSFSP----CIEQVQRSCESLRL-NF  230 (237)
Q Consensus       181 ~~D~v~~~~~~~~----------~~l~~~~~~L~~gG~l~~~~~----~~~~~~~~~~~l~~-~f  230 (237)
                      +||+|++|.+++.          ++++.+.+.|+|||++++...    ......++.+.+++ +|
T Consensus       373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf  437 (521)
T PRK03612        373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL  437 (521)
T ss_pred             CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence            8999999987543          468899999999999987542    13445677778888 68

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=99.26  E-value=1.8e-10  Score=93.06  Aligned_cols=188  Identities=21%  Similarity=0.169  Sum_probs=117.6

Q ss_pred             ccCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeecccccc-------CCCCceEEeccCcEE-EEECC-CHHHH
Q 026506           11 SFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIG-------KPFGSMVFSNKGGFV-YLLAP-TPELW   81 (237)
Q Consensus        11 ~~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------~~~g~~~~~~~~~~~-~~~~~-~~~~~   81 (237)
                      +-.+.+||||+|+......        ||+|..|..|.-+.|+-+.       +.-|..-.+..+... .++.- +...|
T Consensus        72 ~gVt~vkpGDhVI~~f~p~--------CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls~~~~~~~h~lG~stFa~y  143 (366)
T COG1062          72 EGVTSVKPGDHVILLFTPE--------CGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEY  143 (366)
T ss_pred             CCccccCCCCEEEEcccCC--------CCCCchhhCCCcccccchhhhcccccccCCceeeecCCcceeeeeccccchhh
Confidence            4568899999999977556        8999999999888876321       122322222222111 11111 11222


Q ss_pred             hhhcCCccccccc---------------ccHHHHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHH
Q 026506           82 TLVLSHRTQILYI---------------ADISFVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQR  145 (237)
Q Consensus        82 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~  145 (237)
                      ..........+.+               ......+..+++++|+++..+|+|. |..+++-+... +..+++++|++++.
T Consensus       144 ~vv~~~s~vki~~~~p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~a-gA~~IiAvD~~~~K  222 (366)
T COG1062         144 TVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAA-GAGRIIAVDINPEK  222 (366)
T ss_pred             eeecccceEECCCCCCccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHc-CCceEEEEeCCHHH
Confidence            1111111111111               1123467778899999999999999 55566666665 56899999999999


Q ss_pred             HHHHHHHHHHcCCCCcEEEEEc-cccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          146 AASAREDFERTGVSSFVTVGVR-DIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       146 ~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ++.|++    +|....++.... |+.+ ...+.+.++.|.+|....... .+++++..+.++|..++++
T Consensus       223 l~~A~~----fGAT~~vn~~~~~~vv~-~i~~~T~gG~d~~~e~~G~~~-~~~~al~~~~~~G~~v~iG  285 (366)
T COG1062         223 LELAKK----FGATHFVNPKEVDDVVE-AIVELTDGGADYAFECVGNVE-VMRQALEATHRGGTSVIIG  285 (366)
T ss_pred             HHHHHh----cCCceeecchhhhhHHH-HHHHhcCCCCCEEEEccCCHH-HHHHHHHHHhcCCeEEEEe
Confidence            999998    576554444333 3332 122223368999876655544 9999999999999988664

>PRK05785 hypothetical protein; Provisional

Probab=99.26  E-value=9.9e-11  Score=92.21  Aligned_cols=86  Identities=15%  Similarity=0.113  Sum_probs=69.7

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL  187 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~  187 (237)
                      ++.+|||+|||+|.++..+++..  ..+++++|+|++|++.|++.         .....+|+.+.++++   +.||+|++
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d---~sfD~v~~  116 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRD---KSFDVVMS  116 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCC---CCEEEEEe
Confidence            47899999999999999888774  36899999999999998863         123567877666665   78999985


Q ss_pred             -----eCCChhchHHHHHhcccCCC
Q 026506          188 -----DLPQPWLAIPSAKKMLKQDG  207 (237)
Q Consensus       188 -----~~~~~~~~l~~~~~~L~~gG  207 (237)
                           +.+++...++++.+.|||..
T Consensus       117 ~~~l~~~~d~~~~l~e~~RvLkp~~  141 (226)
T PRK05785        117 SFALHASDNIEKVIAEFTRVSRKQV  141 (226)
T ss_pred             cChhhccCCHHHHHHHHHHHhcCce
Confidence                 34566789999999999954

>PLN02672 methionine S-methyltransferase

Probab=99.26  E-value=9.4e-11  Score=108.91  Aligned_cols=123  Identities=20%  Similarity=0.174  Sum_probs=92.6

Q ss_pred             CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC---------------CcEEEEEccccCCC
Q 026506          109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS---------------SFVTVGVRDIQGQG  173 (237)
Q Consensus       109 ~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---------------~~i~~~~~d~~~~~  173 (237)
                      +.+|||+|||+|.+++.++... +..+++++|+|+++++.|++|+..++.+               +++++..+|+.+ .
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~-~  196 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLG-Y  196 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhh-h
Confidence            4689999999999999999885 4479999999999999999999876432               358999999874 2


Q ss_pred             CCCCCCCCCCEEEEeCC-----------------Ch--------------------------hchHHHHHhcccCCCEEE
Q 026506          174 FPDEFSGLADSIFLDLP-----------------QP--------------------------WLAIPSAKKMLKQDGILC  210 (237)
Q Consensus       174 ~~~~~~~~~D~v~~~~~-----------------~~--------------------------~~~l~~~~~~L~~gG~l~  210 (237)
                      +... ...||+|+.|+|                 .|                          ..+++++.+.|+|||.++
T Consensus       197 ~~~~-~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~  275 (1082)
T PLN02672        197 CRDN-NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMI  275 (1082)
T ss_pred             cccc-CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence            3211 136999998876                 00                          124566778999999988


Q ss_pred             EEeCCHHHHHHHH-HHHHh-cCccccc
Q 026506          211 SFSPCIEQVQRSC-ESLRL-NFTGKES  235 (237)
Q Consensus       211 ~~~~~~~~~~~~~-~~l~~-~f~~v~~  235 (237)
                      +-. ...|.+.+. +.+++ +|..+++
T Consensus       276 lEi-G~~q~~~v~~~l~~~~gf~~~~~  301 (1082)
T PLN02672        276 FNM-GGRPGQAVCERLFERRGFRITKL  301 (1082)
T ss_pred             EEE-CccHHHHHHHHHHHHCCCCeeEE
Confidence            544 456667777 47766 7876554

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.25  E-value=7e-11  Score=89.64  Aligned_cols=119  Identities=22%  Similarity=0.258  Sum_probs=83.5

Q ss_pred             ccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCc--------EEEEEeCCHHHHHHHHHHHHHcCCCCcE
Q 026506           91 ILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTG--------HVYTFDFHEQRAASAREDFERTGVSSFV  162 (237)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~--------~v~~vD~~~~~~~~a~~~~~~~~~~~~i  162 (237)
                      .+.+..++.++..+++++++.++|-.||+|++.+..+.......        ++++.|+++++++.+++|++..++...+
T Consensus        11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i   90 (179)
T PF01170_consen   11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI   90 (179)
T ss_dssp             SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE
T ss_pred             CCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce
Confidence            34455555678888899999999999999999988776653322        3899999999999999999999988889


Q ss_pred             EEEEccccCCCCCCCCCCCCCEEEEeCCCh-------------hchHHHHHhcccCCCEEEEEe
Q 026506          163 TVGVRDIQGQGFPDEFSGLADSIFLDLPQP-------------WLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       163 ~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~-------------~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ++...|+.+..+..   +.+|.|+.|+|--             ..+++.+.+.+++ ..++++.
T Consensus        91 ~~~~~D~~~l~~~~---~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~  150 (179)
T PF01170_consen   91 DFIQWDARELPLPD---GSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT  150 (179)
T ss_dssp             EEEE--GGGGGGTT---SBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE
T ss_pred             EEEecchhhccccc---CCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Confidence            99999998754333   6899999999821             2457778888888 4444344

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=3.2e-10  Score=84.39  Aligned_cols=107  Identities=21%  Similarity=0.240  Sum_probs=78.9

Q ss_pred             CCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       105 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      +.-.|.+|+|+|||+|.+++..+..  +...|+++|+++++++.+++|.++.+  ..+++...|+.+  +.    +.+|.
T Consensus        42 g~l~g~~V~DlG~GTG~La~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~l~--g~v~f~~~dv~~--~~----~~~dt  111 (198)
T COG2263          42 GDLEGKTVLDLGAGTGILAIGAALL--GASRVLAVDIDPEALEIARANAEELL--GDVEFVVADVSD--FR----GKFDT  111 (198)
T ss_pred             CCcCCCEEEEcCCCcCHHHHHHHhc--CCcEEEEEecCHHHHHHHHHHHHhhC--CceEEEEcchhh--cC----Cccce
Confidence            4566889999999999999776654  45899999999999999999998833  349999999975  44    67999


Q ss_pred             EEEeCC-------ChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHH
Q 026506          185 IFLDLP-------QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL  226 (237)
Q Consensus       185 v~~~~~-------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l  226 (237)
                      ++.|+|       ..+.+++.+++.-+     ++|+........+.+..
T Consensus       112 vimNPPFG~~~rhaDr~Fl~~Ale~s~-----vVYsiH~a~~~~f~~~~  155 (198)
T COG2263         112 VIMNPPFGSQRRHADRPFLLKALEISD-----VVYSIHKAGSRDFVEKF  155 (198)
T ss_pred             EEECCCCccccccCCHHHHHHHHHhhh-----eEEEeeccccHHHHHHH
Confidence            999987       23456666665542     34555544444444433

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=9.6e-11  Score=88.24  Aligned_cols=115  Identities=23%  Similarity=0.318  Sum_probs=89.8

Q ss_pred             cccHHHHHHhcC--CCCCCEEEEEccCccHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHcCC---------CCc
Q 026506           94 IADISFVIMYLE--LVPGCLVLESGTGSGSLTTSLARAVAPTGH-VYTFDFHEQRAASAREDFERTGV---------SSF  161 (237)
Q Consensus        94 ~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~---------~~~  161 (237)
                      |...+.+++.+.  ++||.+.||+|+|+|+++..++..+++.+. .+++|.-++.++.+++++...-.         ...
T Consensus        66 p~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~  145 (237)
T KOG1661|consen   66 PHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGE  145 (237)
T ss_pred             hHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCc
Confidence            444445777776  899999999999999999999988765544 49999999999999999875431         123


Q ss_pred             EEEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEE
Q 026506          162 VTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       162 i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                      +.+..+|.. ..+++.  .+||.|++.+..+. ..+++.+.|++||++++-
T Consensus       146 l~ivvGDgr-~g~~e~--a~YDaIhvGAaa~~-~pq~l~dqL~~gGrllip  192 (237)
T KOG1661|consen  146 LSIVVGDGR-KGYAEQ--APYDAIHVGAAASE-LPQELLDQLKPGGRLLIP  192 (237)
T ss_pred             eEEEeCCcc-ccCCcc--CCcceEEEccCccc-cHHHHHHhhccCCeEEEe
Confidence            678889987 444443  68999988865544 889999999999998743

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.23  E-value=4e-11  Score=100.39  Aligned_cols=104  Identities=23%  Similarity=0.161  Sum_probs=84.4

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccCC-CCCCCCCCCCCEE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS-SFVTVGVRDIQGQ-GFPDEFSGLADSI  185 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~-~~~~~~~~~~D~v  185 (237)
                      .|++||++.|=||+++++.+..  ++.+|+.||.|...++.|++|++.+|++ .++.++.+|+++. .....-+.+||+|
T Consensus       217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI  294 (393)
T COG1092         217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI  294 (393)
T ss_pred             cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence            4999999999999999776654  6679999999999999999999999974 4578999999861 1111112489999


Q ss_pred             EEeCCCh--------------hchHHHHHhcccCCCEEEEEe
Q 026506          186 FLDLPQP--------------WLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       186 ~~~~~~~--------------~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ++|+|..              ..++..+.++|+|||.+++.+
T Consensus       295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s  336 (393)
T COG1092         295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSS  336 (393)
T ss_pred             EECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            9999832              357888999999999999665

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.23  E-value=1.1e-10  Score=96.62  Aligned_cols=122  Identities=12%  Similarity=0.130  Sum_probs=84.4

Q ss_pred             HhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCC
Q 026506          102 MYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL  181 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  181 (237)
                      +++...++.+|||+|||+|.++..++..   ..+|+++|+++.+++.|+++++.+++.+ +++..+|+.+....  ..+.
T Consensus       167 ~~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~-v~~~~~D~~~~~~~--~~~~  240 (315)
T PRK03522        167 DWVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTN-VQFQALDSTQFATA--QGEV  240 (315)
T ss_pred             HHHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEcCHHHHHHh--cCCC
Confidence            3444345789999999999999998875   3689999999999999999999988855 99999998752111  1146


Q ss_pred             CCEEEEeCCChh--chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHhcCc
Q 026506          182 ADSIFLDLPQPW--LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFT  231 (237)
Q Consensus       182 ~D~v~~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~  231 (237)
                      ||+|++|+|...  ..+...+..++|++.+++.. ....+.+-++.+ .+|.
T Consensus       241 ~D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvsc-~p~t~~rd~~~l-~~y~  290 (315)
T PRK03522        241 PDLVLVNPPRRGIGKELCDYLSQMAPRFILYSSC-NAQTMAKDLAHL-PGYR  290 (315)
T ss_pred             CeEEEECCCCCCccHHHHHHHHHcCCCeEEEEEC-CcccchhHHhhc-cCcE
Confidence            999999988542  12333344456765555332 224444555555 3443

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.23  E-value=2e-10  Score=91.03  Aligned_cols=110  Identities=22%  Similarity=0.282  Sum_probs=83.6

Q ss_pred             HHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC
Q 026506           98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE  177 (237)
Q Consensus        98 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  177 (237)
                      ..+...+...++.+|||+|||+|.++..+++.   ..+++++|+++.+++.+++++...+.  .+++...|+.+  ++..
T Consensus        38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~--~~~~  110 (233)
T PRK05134         38 NYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEE--LAAE  110 (233)
T ss_pred             HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHH--hhhh
Confidence            34555555678899999999999999888765   26799999999999999998876554  36777777754  2211


Q ss_pred             CCCCCCEEEE-----eCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          178 FSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       178 ~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ..+.||+|++     +.+++..+++.+.+.|+|||.+++..+
T Consensus       111 ~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~  152 (233)
T PRK05134        111 HPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL  152 (233)
T ss_pred             cCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence            1268999975     345666789999999999999986543

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.22  E-value=1.1e-10  Score=94.13  Aligned_cols=104  Identities=19%  Similarity=0.201  Sum_probs=74.6

Q ss_pred             CCCCCEEEEEccCccH----HHHHHHHHhC----CCcEEEEEeCCHHHHHHHHHHHHH----cC----------------
Q 026506          106 LVPGCLVLESGTGSGS----LTTSLARAVA----PTGHVYTFDFHEQRAASAREDFER----TG----------------  157 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~----~~~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~----~~----------------  157 (237)
                      ..++.+|+|+|||+|.    +++.+++...    ...+|+++|+|+.+++.|++..-.    .+                
T Consensus        97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~  176 (264)
T smart00138       97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK  176 (264)
T ss_pred             CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence            3456799999999996    4445555432    146899999999999999985310    01                


Q ss_pred             ------CCCcEEEEEccccCCCCCCCCCCCCCEEEEeC-------CChhchHHHHHhcccCCCEEEEE
Q 026506          158 ------VSSFVTVGVRDIQGQGFPDEFSGLADSIFLDL-------PQPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       158 ------~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~-------~~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                            +.+.+++...|+.+...+.   +.||+|++..       +....+++++.+.|+|||.+++-
T Consensus       177 ~~v~~~ir~~V~F~~~dl~~~~~~~---~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg  241 (264)
T smart00138      177 YRVKPELKERVRFAKHNLLAESPPL---GDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG  241 (264)
T ss_pred             EEEChHHhCcCEEeeccCCCCCCcc---CCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence                  1134788899998644433   7899998732       23346899999999999999843

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.21  E-value=2.1e-11  Score=92.57  Aligned_cols=106  Identities=20%  Similarity=0.185  Sum_probs=76.6

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC--CCCCCCE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE--FSGLADS  184 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~--~~~~~D~  184 (237)
                      -+|.++||+.||+|.+++..+.+  +..+|+.+|.++..++.+++|++..+..+.+.+...|+.. .+...  ....||+
T Consensus        41 ~~g~~vLDLFaGSGalGlEALSR--GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~-~l~~~~~~~~~fDi  117 (183)
T PF03602_consen   41 LEGARVLDLFAGSGALGLEALSR--GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFK-FLLKLAKKGEKFDI  117 (183)
T ss_dssp             HTT-EEEETT-TTSHHHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHH-HHHHHHHCTS-EEE
T ss_pred             cCCCeEEEcCCccCccHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHH-HHHhhcccCCCceE
Confidence            47899999999999999887776  5689999999999999999999999988779999999764 11110  1268999


Q ss_pred             EEEeCCChh-----chHHHHH--hcccCCCEEEEEeCC
Q 026506          185 IFLDLPQPW-----LAIPSAK--KMLKQDGILCSFSPC  215 (237)
Q Consensus       185 v~~~~~~~~-----~~l~~~~--~~L~~gG~l~~~~~~  215 (237)
                      ||+|+|-..     .+++.+.  ..|+++|.+++-...
T Consensus       118 IflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~  155 (183)
T PF03602_consen  118 IFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSK  155 (183)
T ss_dssp             EEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred             EEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence            999998433     3455554  678899998866543

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.21  E-value=4.2e-10  Score=88.13  Aligned_cols=121  Identities=21%  Similarity=0.152  Sum_probs=90.3

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC--CCCCCCCE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD--EFSGLADS  184 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~--~~~~~~D~  184 (237)
                      ..+..+||+|||+|..++.++..++ .+.++++|.++.++..|.+|+.++++.+++.+++.+.....+.+  ...+.+|+
T Consensus       147 ~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dl  225 (328)
T KOG2904|consen  147 SKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDL  225 (328)
T ss_pred             cccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeE
Confidence            4456999999999999999999985 68999999999999999999999999888988865444321111  12378999


Q ss_pred             EEEeCCCh-------------------------------hchHHHHHhcccCCCEEEEEeC----CHHHHHHHHHHHHh
Q 026506          185 IFLDLPQP-------------------------------WLAIPSAKKMLKQDGILCSFSP----CIEQVQRSCESLRL  228 (237)
Q Consensus       185 v~~~~~~~-------------------------------~~~l~~~~~~L~~gG~l~~~~~----~~~~~~~~~~~l~~  228 (237)
                      ++.|+|--                               ..++.-+-+.|+|||.+.+-..    ...-+..|+..+.+
T Consensus       226 lvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~m~s~~~  304 (328)
T KOG2904|consen  226 LVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVRIWMISLKD  304 (328)
T ss_pred             EecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccCcHHHHHHHHhchh
Confidence            99887610                               1246667899999999886543    22335566665555

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=99.21  E-value=1.1e-10  Score=98.73  Aligned_cols=187  Identities=18%  Similarity=0.141  Sum_probs=108.3

Q ss_pred             CCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCC--CCceE-------------E--eccCcEE-EEE
Q 026506           13 TRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKP--FGSMV-------------F--SNKGGFV-YLL   74 (237)
Q Consensus        13 ~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~g~~~-------------~--~~~~~~~-~~~   74 (237)
                      ...+++||||.+....+        ||.|.+|+.|..+.|......  .|...             .  ...|++. |..
T Consensus        80 v~~~~~GdrV~~~~~~~--------cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~g~G~~aey~~  151 (371)
T cd08281          80 VTDLEVGDHVVLVFVPS--------CGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEINHHLGVSAFAEYAV  151 (371)
T ss_pred             CCcCCCCCEEEEccCCC--------CCCCccccCCCcccccCccccccccccccCcccccccCcccccccCcccceeeEE
Confidence            34689999999866555        899999999988887642110  01000             0  0012333 333


Q ss_pred             CCCHHHHhh--hcCC-cccccccc-cHHH--HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHH
Q 026506           75 APTPELWTL--VLSH-RTQILYIA-DISF--VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAA  147 (237)
Q Consensus        75 ~~~~~~~~~--~~~~-~~~~~~~~-~~~~--~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~  147 (237)
                      .|....+..  .++. .+..+... ..+.  +.....++++++||..|+|+ |.++.++++..+ ..+|+++|.+++.++
T Consensus       152 v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G-~~~Vi~~~~~~~r~~  230 (371)
T cd08281         152 VSRRSVVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAG-ASQVVAVDLNEDKLA  230 (371)
T ss_pred             ecccceEECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHH
Confidence            333221111  1111 11111111 1111  23445688999999999988 777888888763 247999999999999


Q ss_pred             HHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          148 SAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       148 ~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .+++    .|.+..++....|..+ .+.....+++|+|+..... ...++.+.+.|+++|+++.++.
T Consensus       231 ~a~~----~Ga~~~i~~~~~~~~~-~i~~~~~~g~d~vid~~G~-~~~~~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         231 LARE----LGATATVNAGDPNAVE-QVRELTGGGVDYAFEMAGS-VPALETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             HHHH----cCCceEeCCCchhHHH-HHHHHhCCCCCEEEECCCC-hHHHHHHHHHHhcCCEEEEEcc
Confidence            8876    4654323322222221 1111111469997755543 3478889999999999997763

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.21  E-value=3.2e-10  Score=95.80  Aligned_cols=120  Identities=11%  Similarity=0.139  Sum_probs=87.4

Q ss_pred             hcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCC
Q 026506          103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA  182 (237)
Q Consensus       103 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  182 (237)
                      .++..++.+|||+|||+|.+++.++..   ..+++++|+++.+++.|++|++.+++++ +++..+|+.+.. .. ....|
T Consensus       228 ~l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~-~~~~~~d~~~~~-~~-~~~~~  301 (374)
T TIGR02085       228 WVREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDN-LSFAALDSAKFA-TA-QMSAP  301 (374)
T ss_pred             HHHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHHH-Hh-cCCCC
Confidence            334345689999999999999888854   3689999999999999999999988865 999999986421 11 11459


Q ss_pred             CEEEEeCCChh---chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHhcCc
Q 026506          183 DSIFLDLPQPW---LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFT  231 (237)
Q Consensus       183 D~v~~~~~~~~---~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~  231 (237)
                      |+|++|+|...   .+++.+. .++|++.+++.. ...++.+-+..| .+|.
T Consensus       302 D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvsc-~p~TlaRDl~~L-~gy~  350 (374)
T TIGR02085       302 ELVLVNPPRRGIGKELCDYLS-QMAPKFILYSSC-NAQTMAKDIAEL-SGYQ  350 (374)
T ss_pred             CEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEEe-CHHHHHHHHHHh-cCce
Confidence            99999998542   3444443 478887776443 345666666666 5554

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.20  E-value=1.8e-10  Score=89.68  Aligned_cols=98  Identities=14%  Similarity=0.075  Sum_probs=71.6

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC--------------CCcEEEEEccccCC
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV--------------SSFVTVGVRDIQGQ  172 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--------------~~~i~~~~~d~~~~  172 (237)
                      .++.+|||+|||.|..+..++.+   ...|+++|+|+.+++.+.+.   .++              ...+++.++|+.+.
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~  106 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL  106 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEEEEccCCCC
Confidence            56789999999999999999876   47899999999999986432   121              12488899999863


Q ss_pred             CCCCCCCCCCCEEEEe-----CC--ChhchHHHHHhcccCCCEEEEE
Q 026506          173 GFPDEFSGLADSIFLD-----LP--QPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       173 ~~~~~~~~~~D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                      ...  ..+.||.|+-.     .+  .....++.+.++|+|||+++++
T Consensus       107 ~~~--~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~  151 (213)
T TIGR03840       107 TAA--DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI  151 (213)
T ss_pred             Ccc--cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence            321  11568887632     22  1235799999999999986544

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.20  E-value=4.8e-11  Score=88.82  Aligned_cols=94  Identities=33%  Similarity=0.426  Sum_probs=70.6

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..++.+|||+|||.|.++..++..  + .+++++|+++.+++.          .+ ......+......+.   +.||+|
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~--~-~~~~g~D~~~~~~~~----------~~-~~~~~~~~~~~~~~~---~~fD~i   82 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKR--G-FEVTGVDISPQMIEK----------RN-VVFDNFDAQDPPFPD---GSFDLI   82 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHT--T-SEEEEEESSHHHHHH----------TT-SEEEEEECHTHHCHS---SSEEEE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHh--C-CEEEEEECCHHHHhh----------hh-hhhhhhhhhhhhccc---cchhhH
Confidence            577889999999999999888655  2 499999999999887          11 222222222122233   789999


Q ss_pred             EEe-----CCChhchHHHHHhcccCCCEEEEEeCCH
Q 026506          186 FLD-----LPQPWLAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       186 ~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                      ++.     .+++..+++.+.+.|||||.+++..+..
T Consensus        83 ~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~  118 (161)
T PF13489_consen   83 ICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR  118 (161)
T ss_dssp             EEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred             hhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            864     4567789999999999999999888864

...

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.19  E-value=1.4e-10  Score=88.87  Aligned_cols=100  Identities=24%  Similarity=0.415  Sum_probs=77.0

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..++++|+|+.||.|.+++.++... ....|+++|++|..++.++++++.+++.+.+....+|..+. .+.   +.+|.|
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~-~~~---~~~drv  173 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREF-LPE---GKFDRV  173 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----T---T-EEEE
T ss_pred             CCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHh-cCc---cccCEE
Confidence            6789999999999999999998853 45789999999999999999999999998899999998752 223   789999


Q ss_pred             EEeCCC-hhchHHHHHhcccCCCEEE
Q 026506          186 FLDLPQ-PWLAIPSAKKMLKQDGILC  210 (237)
Q Consensus       186 ~~~~~~-~~~~l~~~~~~L~~gG~l~  210 (237)
                      +++.|. ...++..+...+++||.+.
T Consensus       174 im~lp~~~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  174 IMNLPESSLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             EE--TSSGGGGHHHHHHHEEEEEEEE
T ss_pred             EECChHHHHHHHHHHHHHhcCCcEEE
Confidence            998874 4578999999999999875

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.19  E-value=4.1e-10  Score=88.65  Aligned_cols=102  Identities=23%  Similarity=0.278  Sum_probs=79.3

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      ..+.+|||+|||+|.++..++..   ..+++++|+++.+++.+++++...+..+ +.+...|+.+.....  .+.||+|+
T Consensus        44 ~~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~--~~~~D~i~  117 (224)
T TIGR01983        44 LFGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLLK-IEYRCTSVEDLAEKG--AKSFDVVT  117 (224)
T ss_pred             CCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEeCCHHHhhcCC--CCCccEEE
Confidence            34789999999999999887765   2469999999999999999887766533 778888876422221  26799997


Q ss_pred             Ee-----CCChhchHHHHHhcccCCCEEEEEeC
Q 026506          187 LD-----LPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       187 ~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ++     ..++..+++++.+.|+|||.+++..+
T Consensus       118 ~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~  150 (224)
T TIGR01983       118 CMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI  150 (224)
T ss_pred             ehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence            63     45667789999999999999886543

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.19  E-value=5.8e-10  Score=83.69  Aligned_cols=106  Identities=18%  Similarity=0.158  Sum_probs=82.5

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC-CCCCCCCEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-EFSGLADSI  185 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~~~~D~v  185 (237)
                      -.|.++||+.+|+|.+++..+.+  +..+++.+|.+...+..+++|++..+.....++...|+.. .++. .....||+|
T Consensus        42 i~g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~-~L~~~~~~~~FDlV  118 (187)
T COG0742          42 IEGARVLDLFAGSGALGLEALSR--GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALR-ALKQLGTREPFDLV  118 (187)
T ss_pred             cCCCEEEEecCCccHhHHHHHhC--CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHH-HHHhcCCCCcccEE
Confidence            57899999999999999888877  4689999999999999999999998877778888888873 2111 111349999


Q ss_pred             EEeCCChhchH------HH--HHhcccCCCEEEEEeCC
Q 026506          186 FLDLPQPWLAI------PS--AKKMLKQDGILCSFSPC  215 (237)
Q Consensus       186 ~~~~~~~~~~l------~~--~~~~L~~gG~l~~~~~~  215 (237)
                      |+|+|-.+..+      ..  -...|+|+|.+++-...
T Consensus       119 flDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~  156 (187)
T COG0742         119 FLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK  156 (187)
T ss_pred             EeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence            99999664333      12  23569999999966553

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.19  E-value=2.7e-10  Score=99.51  Aligned_cols=107  Identities=26%  Similarity=0.272  Sum_probs=81.9

Q ss_pred             HHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC--CCCC
Q 026506           98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFP  175 (237)
Q Consensus        98 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~  175 (237)
                      ..++..+...++.+|||+|||+|.++..++...   .+++++|+++.+++.+++.   .+...++.+...|+..  .+++
T Consensus        27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~~~  100 (475)
T PLN02336         27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLNIS  100 (475)
T ss_pred             hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccCCC
Confidence            346677776778899999999999999998873   6899999999999887653   2222348889999863  2334


Q ss_pred             CCCCCCCCEEEEeCC-----C--hhchHHHHHhcccCCCEEEEEe
Q 026506          176 DEFSGLADSIFLDLP-----Q--PWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       176 ~~~~~~~D~v~~~~~-----~--~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .   +.||+|+++..     +  ...+++++.+.|||||++++..
T Consensus       101 ~---~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d  142 (475)
T PLN02336        101 D---GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE  142 (475)
T ss_pred             C---CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            3   68999987542     1  2468999999999999998753

>PHA03412 putative methyltransferase; Provisional

Probab=99.18  E-value=2.8e-10  Score=88.59  Aligned_cols=92  Identities=15%  Similarity=0.182  Sum_probs=70.0

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVA--PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      .+.+|||+|||+|.++..+++.+.  +..+++++|+++.+++.|+++..     + +.+...|+....+ .   +.||+|
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----~-~~~~~~D~~~~~~-~---~~FDlI  118 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----E-ATWINADALTTEF-D---TLFDMA  118 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----C-CEEEEcchhcccc-c---CCccEE
Confidence            467999999999999999887642  24689999999999999998642     3 7788899875332 2   689999


Q ss_pred             EEeCCCh-----------------hchHHHHHhcccCCCEE
Q 026506          186 FLDLPQP-----------------WLAIPSAKKMLKQDGIL  209 (237)
Q Consensus       186 ~~~~~~~-----------------~~~l~~~~~~L~~gG~l  209 (237)
                      +.|+|-.                 ..+++.+.+++++|+.|
T Consensus       119 IsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~I  159 (241)
T PHA03412        119 ISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFI  159 (241)
T ss_pred             EECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEE
Confidence            9998711                 23677888866666653

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.18  E-value=2.2e-10  Score=87.72  Aligned_cols=124  Identities=19%  Similarity=0.162  Sum_probs=98.6

Q ss_pred             cccccccHHH-HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q 026506           90 QILYIADISF-VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD  168 (237)
Q Consensus        90 ~~~~~~~~~~-~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d  168 (237)
                      .+..+.+... +...+....+.+++|+|.=+|+.++.+|..++.+++|+++|++++..+.+.+..+..|...++++.+++
T Consensus        54 ~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~  133 (237)
T KOG1663|consen   54 EMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGP  133 (237)
T ss_pred             ceecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecc
Confidence            3333444443 344556677889999999999999999999988999999999999999999999989998889999998


Q ss_pred             ccC---CCCCCCCCCCCCEEEEeCC--ChhchHHHHHhcccCCCEEEEEe
Q 026506          169 IQG---QGFPDEFSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       169 ~~~---~~~~~~~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ..+   .-+.....+.||.+|+|..  ......+++.+++++||+|++-.
T Consensus       134 a~esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~DN  183 (237)
T KOG1663|consen  134 ALESLDELLADGESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVDN  183 (237)
T ss_pred             hhhhHHHHHhcCCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEec
Confidence            875   1112222378999999875  44578999999999999998553

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.16  E-value=6.5e-10  Score=86.92  Aligned_cols=99  Identities=17%  Similarity=0.096  Sum_probs=72.0

Q ss_pred             CCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC--------------CCcEEEEEcccc
Q 026506          105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV--------------SSFVTVGVRDIQ  170 (237)
Q Consensus       105 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--------------~~~i~~~~~d~~  170 (237)
                      ...++.+|||+|||.|..+..++.+   ..+|+++|+++.+++.+.+.   .++              ...+++.++|+.
T Consensus        34 ~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~~---~~l~~~~~~~~~~~~~~~~~v~~~~~D~~  107 (218)
T PRK13255         34 ALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFAE---NGLTPQTRQSGEFEHYQAGEITIYCGDFF  107 (218)
T ss_pred             CCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHHH---cCCCccccccccccccccCceEEEECccc
Confidence            4456789999999999999999875   47899999999999986431   222              234888899998


Q ss_pred             CCCCCCCCCCCCCEEEE-----eCC--ChhchHHHHHhcccCCCEEEE
Q 026506          171 GQGFPDEFSGLADSIFL-----DLP--QPWLAIPSAKKMLKQDGILCS  211 (237)
Q Consensus       171 ~~~~~~~~~~~~D~v~~-----~~~--~~~~~l~~~~~~L~~gG~l~~  211 (237)
                      +.....  .+.||.|+-     ..+  ....+++.+.++|+|||++++
T Consensus       108 ~l~~~~--~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        108 ALTAAD--LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             CCCccc--CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence            632221  156898873     222  223679999999999987543

>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A

Probab=99.16  E-value=5.7e-11  Score=68.79  Aligned_cols=53  Identities=26%  Similarity=0.429  Sum_probs=37.6

Q ss_pred             ccCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceE
Q 026506           11 SFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMV   63 (237)
Q Consensus        11 ~~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~   63 (237)
                      +++++|++||||.+.++++++..+.|.+|..+++..|.+.|++++|.+.|..+
T Consensus         1 ~R~Gpf~~GdrVQlTD~Kgr~~Ti~L~~G~~fhThrG~i~HDdlIG~~eGsVV   53 (54)
T PF14801_consen    1 MRRGPFRAGDRVQLTDPKGRKHTITLEPGGEFHTHRGAIRHDDLIGRPEGSVV   53 (54)
T ss_dssp             ----S--TT-EEEEEETT--EEEEE--TT-EEEETTEEEEHHHHTT--TTEEE
T ss_pred             CCcCCCCCCCEEEEccCCCCeeeEEECCCCeEEcCccccchhheecCCCcEEe
Confidence            46899999999999999999999999999999999999999999999998765

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=99.16  E-value=3.5e-10  Score=94.50  Aligned_cols=180  Identities=21%  Similarity=0.209  Sum_probs=108.2

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCC-----
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSH-----   87 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----   87 (237)
                      ..+++||||+.....+        ||.|.+|+.|..+.|......+|.   ...|++. |...|....+  .++.     
T Consensus        74 ~~~~~Gd~V~~~~~~~--------c~~c~~c~~g~~~~c~~~~~~~g~---~~~G~~ae~~~v~~~~~~--~~P~~~~~~  140 (339)
T cd08239          74 THFRVGDRVMVYHYVG--------CGACRNCRRGWMQLCTSKRAAYGW---NRDGGHAEYMLVPEKTLI--PLPDDLSFA  140 (339)
T ss_pred             ccCCCCCEEEECCCCC--------CCCChhhhCcCcccCcCccccccc---CCCCcceeEEEechHHeE--ECCCCCCHH
Confidence            4689999999987666        899999999988777532111221   1234444 3333322211  1111     


Q ss_pred             ccccc-ccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE
Q 026506           88 RTQIL-YIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV  164 (237)
Q Consensus        88 ~~~~~-~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~  164 (237)
                      .+..+ .+...+ ..+..+.+.++++||.+|+|. |.++.++++..+. .++++++.+++..+.+++    .|.+..++.
T Consensus       141 ~aa~l~~~~~ta~~~l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~-~~vi~~~~~~~~~~~~~~----~ga~~~i~~  215 (339)
T cd08239         141 DGALLLCGIGTAYHALRRVGVSGRDTVLVVGAGPVGLGALMLARALGA-EDVIGVDPSPERLELAKA----LGADFVINS  215 (339)
T ss_pred             HhhhhcchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH----hCCCEEEcC
Confidence            11111 111111 234556788899999999987 7778888888642 359999999998888865    454332222


Q ss_pred             EEccccCCCCCC-CCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          165 GVRDIQGQGFPD-EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       165 ~~~d~~~~~~~~-~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ...+ .+ .+.. ..+.++|+|+...... ..+..+.+.|+++|++++++.
T Consensus       216 ~~~~-~~-~~~~~~~~~~~d~vid~~g~~-~~~~~~~~~l~~~G~~v~~g~  263 (339)
T cd08239         216 GQDD-VQ-EIRELTSGAGADVAIECSGNT-AARRLALEAVRPWGRLVLVGE  263 (339)
T ss_pred             Ccch-HH-HHHHHhCCCCCCEEEECCCCH-HHHHHHHHHhhcCCEEEEEcC
Confidence            2222 11 0110 1113699977555443 367888999999999998764

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR03438 probable methyltransferase

Probab=99.16  E-value=3.9e-10  Score=92.63  Aligned_cols=107  Identities=17%  Similarity=0.138  Sum_probs=74.8

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC-CCCCCCCCCCCC-E
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGFPDEFSGLAD-S  184 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~~~~D-~  184 (237)
                      .++.+|||+|||+|..+..+++.+....+++++|+|+++++.+++++........+..+.+|+.+ ..++.......+ +
T Consensus        62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~  141 (301)
T TIGR03438        62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG  141 (301)
T ss_pred             CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence            46789999999999999999988643478999999999999999987653222236778899875 223321001122 2


Q ss_pred             EEEeC-----C--ChhchHHHHHhcccCCCEEEEEe
Q 026506          185 IFLDL-----P--QPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       185 v~~~~-----~--~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ++.+.     +  ....+++++.+.|+|||.+++-.
T Consensus       142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~  177 (301)
T TIGR03438       142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV  177 (301)
T ss_pred             EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            23221     1  22357999999999999998644

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.15  E-value=6.3e-10  Score=87.36  Aligned_cols=105  Identities=27%  Similarity=0.350  Sum_probs=77.9

Q ss_pred             HHHhcC--CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC
Q 026506          100 VIMYLE--LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE  177 (237)
Q Consensus       100 ~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  177 (237)
                      ++..+.  ..++.+|||+|||+|.++..++..   ..+++++|+++++++.|++++...+..+++.+...|+.+  .+  
T Consensus        45 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--~~--  117 (219)
T TIGR02021        45 LLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLS--LC--  117 (219)
T ss_pred             HHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhh--CC--
Confidence            444444  567899999999999999988765   368999999999999999998776654458999999864  22  


Q ss_pred             CCCCCCEEEEe-----CC--ChhchHHHHHhcccCCCEEEEEeC
Q 026506          178 FSGLADSIFLD-----LP--QPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       178 ~~~~~D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                        +.||+|+..     .+  ....+++++.+.+++++.+. +.+
T Consensus       118 --~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~-~~~  158 (219)
T TIGR02021       118 --GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFT-FAP  158 (219)
T ss_pred             --CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEE-ECC
Confidence              569998752     12  22356788888877655544 444

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.15  E-value=4.8e-10  Score=95.64  Aligned_cols=125  Identities=20%  Similarity=0.225  Sum_probs=94.6

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .+.++++..++++++|+-||.|.+++.++..   ..+|+++|+++++++.|++|++.+++.| +++..+++.+.......
T Consensus       284 ~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~~~~~~  359 (432)
T COG2265         284 TALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEFTPAWWE  359 (432)
T ss_pred             HHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHhhhccc
Confidence            4667778888999999999999999999966   3899999999999999999999999998 99999998762111111


Q ss_pred             CCCCCEEEEeCCChh---chHHHHHhcccCCCEEEEEeCCH-HHHHHHHHHHHh-cC
Q 026506          179 SGLADSIFLDLPQPW---LAIPSAKKMLKQDGILCSFSPCI-EQVQRSCESLRL-NF  230 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~---~~l~~~~~~L~~gG~l~~~~~~~-~~~~~~~~~l~~-~f  230 (237)
                      ...+|+|++|+|...   ++++.+ ..++|-.+++  +.|. .++.+-+..|.+ ++
T Consensus       360 ~~~~d~VvvDPPR~G~~~~~lk~l-~~~~p~~IvY--VSCNP~TlaRDl~~L~~~gy  413 (432)
T COG2265         360 GYKPDVVVVDPPRAGADREVLKQL-AKLKPKRIVY--VSCNPATLARDLAILASTGY  413 (432)
T ss_pred             cCCCCEEEECCCCCCCCHHHHHHH-HhcCCCcEEE--EeCCHHHHHHHHHHHHhCCe
Confidence            247899999998543   333333 3445555554  4444 667777788777 54

>PRK00536 speE spermidine synthase; Provisional

Probab=99.13  E-value=1.3e-09  Score=86.89  Aligned_cols=124  Identities=19%  Similarity=0.039  Sum_probs=91.2

Q ss_pred             hcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEccccCCCCCCCCC
Q 026506          103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG--V-SSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       103 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ..+.. ..+||.+|.|-|+.+..++++  + .+|+.+|++++.++.+++.+....  . +.++++... +.     +...
T Consensus        68 ~~h~~-pk~VLIiGGGDGg~~REvLkh--~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~-----~~~~  137 (262)
T PRK00536         68 CTKKE-LKEVLIVDGFDLELAHQLFKY--D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL-----DLDI  137 (262)
T ss_pred             hhCCC-CCeEEEEcCCchHHHHHHHCc--C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh-----hccC
Confidence            34444 489999999999999999988  3 499999999999999999654321  1 344666541 21     1111


Q ss_pred             CCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe--CC--HHHHHHHHHHHHhcCcccccc
Q 026506          180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS--PC--IEQVQRSCESLRLNFTGKESC  236 (237)
Q Consensus       180 ~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~--~~--~~~~~~~~~~l~~~f~~v~~~  236 (237)
                      +.||+|++|...+.+..+.+.+.|+|||.++.-+  |.  ......+.+.+++.|+.+..+
T Consensus       138 ~~fDVIIvDs~~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~v~~y  198 (262)
T PRK00536        138 KKYDLIICLQEPDIHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFSIAMPF  198 (262)
T ss_pred             CcCCEEEEcCCCChHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCCceEEE
Confidence            6799999997666778999999999999999754  33  344567777777778866543

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=99.12  E-value=5.6e-09  Score=80.09  Aligned_cols=160  Identities=21%  Similarity=0.267  Sum_probs=100.5

Q ss_pred             CCCCceEEeccCc----EEEEECCCHHHHhhhcCCcccccccccHHHH---HHhcCCCCCCEEEEEccCccHHHHHHHHH
Q 026506           57 KPFGSMVFSNKGG----FVYLLAPTPELWTLVLSHRTQILYIADISFV---IMYLELVPGCLVLESGTGSGSLTTSLARA  129 (237)
Q Consensus        57 ~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~vldiG~G~G~~~~~~~~~  129 (237)
                      ..||+......+.    .++.+.|.....               .+.+   +..+.+++|.+||-+|+.+|....+++.-
T Consensus        30 ~vYGEk~i~~~~~~~~~eYR~W~P~RSKL---------------aAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDI   94 (229)
T PF01269_consen   30 SVYGEKRISVEGEGKKVEYRVWNPFRSKL---------------AAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDI   94 (229)
T ss_dssp             -SSSSEEEEETTE---EEEEEE-TTT-HH---------------HHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHH
T ss_pred             cccCceeEeecCCCCccceeecCchhhHH---------------HHHHHcCccccCCCCCCEEEEecccCCCccchhhhc
Confidence            3566666665555    556666643311               1112   23456889999999999999999999999


Q ss_pred             hCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCChhc---hHHHHHhcccCC
Q 026506          130 VAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWL---AIPSAKKMLKQD  206 (237)
Q Consensus       130 ~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~---~l~~~~~~L~~g  206 (237)
                      .++.+.|+++|.++......-...++..  | +-.+.+|+.........-+.+|+|+.|...+.+   ++.++...||+|
T Consensus        95 vg~~G~VYaVEfs~r~~rdL~~la~~R~--N-IiPIl~DAr~P~~Y~~lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~g  171 (229)
T PF01269_consen   95 VGPDGVVYAVEFSPRSMRDLLNLAKKRP--N-IIPILEDARHPEKYRMLVEMVDVIFQDVAQPDQARIAALNARHFLKPG  171 (229)
T ss_dssp             HTTTSEEEEEESSHHHHHHHHHHHHHST--T-EEEEES-TTSGGGGTTTS--EEEEEEE-SSTTHHHHHHHHHHHHEEEE
T ss_pred             cCCCCcEEEEEecchhHHHHHHHhccCC--c-eeeeeccCCChHHhhcccccccEEEecCCChHHHHHHHHHHHhhccCC
Confidence            9888999999999966555444333322  4 888999998522222233589999999876653   578888999999


Q ss_pred             CEEEEEeC--C-------HHHHHHHHHHHHh-cCcccc
Q 026506          207 GILCSFSP--C-------IEQVQRSCESLRL-NFTGKE  234 (237)
Q Consensus       207 G~l~~~~~--~-------~~~~~~~~~~l~~-~f~~v~  234 (237)
                      |.+++..-  +       ..-..+..+.|++ +|.-++
T Consensus       172 G~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e  209 (229)
T PF01269_consen  172 GHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLE  209 (229)
T ss_dssp             EEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred             cEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChhe
Confidence            99886531  1       1224556667776 576433

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.12  E-value=7e-10  Score=83.35  Aligned_cols=105  Identities=22%  Similarity=0.283  Sum_probs=79.1

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC--CCCCCCCCCCCC
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLAD  183 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~~~~D  183 (237)
                      +.||.+|||+|||.|.+...+...  .....+++|++++.+..+.++    |    +.++++|+.+  ..+++   +.||
T Consensus        11 I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r----G----v~Viq~Dld~gL~~f~d---~sFD   77 (193)
T PF07021_consen   11 IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR----G----VSVIQGDLDEGLADFPD---QSFD   77 (193)
T ss_pred             cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc----C----CCEEECCHHHhHhhCCC---CCcc
Confidence            468899999999999999888876  358899999999998888773    5    6678888875  23555   8999


Q ss_pred             EEEEeC-----CChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHH
Q 026506          184 SIFLDL-----PQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL  226 (237)
Q Consensus       184 ~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l  226 (237)
                      .|+++-     ..|..+|+++.   +-|...++.-|+-...+.-++.+
T Consensus        78 ~VIlsqtLQ~~~~P~~vL~Eml---RVgr~~IVsFPNFg~W~~R~~l~  122 (193)
T PF07021_consen   78 YVILSQTLQAVRRPDEVLEEML---RVGRRAIVSFPNFGHWRNRLQLL  122 (193)
T ss_pred             EEehHhHHHhHhHHHHHHHHHH---HhcCeEEEEecChHHHHHHHHHH
Confidence            999753     35555666664   55777787778776655554544

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.12  E-value=1.3e-09  Score=95.42  Aligned_cols=121  Identities=17%  Similarity=0.225  Sum_probs=100.8

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC--CCCCCCCCCCCCE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLADS  184 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~~~~D~  184 (237)
                      ..+..+||||||.|.++..+|... |...++|+|++...+..+.+.....++.| +.+...|+..  ..++.   +.+|.
T Consensus       346 ~~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~~---~sv~~  420 (506)
T PRK01544        346 EKRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDLPN---NSLDG  420 (506)
T ss_pred             CCCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhcCc---ccccE
Confidence            346799999999999999999884 77899999999999998888888888877 7777777642  23444   77999


Q ss_pred             EEEeCCChh-------------chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-c-Ccc
Q 026506          185 IFLDLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-N-FTG  232 (237)
Q Consensus       185 v~~~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~-f~~  232 (237)
                      |+++.|+||             ++++.+.+.|+|||.+.+-+...+....+++.+.+ + |..
T Consensus       421 i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~~f~~  483 (506)
T PRK01544        421 IYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNGNFEI  483 (506)
T ss_pred             EEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCCCeEe
Confidence            999999997             47999999999999999888888888888888776 3 653

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.12  E-value=6e-10  Score=85.27  Aligned_cols=105  Identities=12%  Similarity=0.083  Sum_probs=78.1

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC--CCCCCCCCCCCE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDEFSGLADS  184 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~~D~  184 (237)
                      ..+.++||++||+|.+++.++.+  +..+++++|.++.+++.+++|++.++..+++++..+|+...  .+.. ....+|+
T Consensus        48 ~~g~~vLDLfaGsG~lglea~sr--ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~-~~~~~dv  124 (189)
T TIGR00095        48 IQGAHLLDVFAGSGLLGEEALSR--GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK-KPTFDNV  124 (189)
T ss_pred             cCCCEEEEecCCCcHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc-cCCCceE
Confidence            35789999999999999988887  34689999999999999999999988765689999998541  1111 0124899


Q ss_pred             EEEeCCChhc----hHHHH--HhcccCCCEEEEEeC
Q 026506          185 IFLDLPQPWL----AIPSA--KKMLKQDGILCSFSP  214 (237)
Q Consensus       185 v~~~~~~~~~----~l~~~--~~~L~~gG~l~~~~~  214 (237)
                      |+.|+|-...    +++.+  ...|+++|.+++-.+
T Consensus       125 v~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~  160 (189)
T TIGR00095       125 IYLDPPFFNGALQALLELCENNWILEDTVLIVVEED  160 (189)
T ss_pred             EEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence            9999874432    33333  235788888776544

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.12  E-value=1.2e-10  Score=93.99  Aligned_cols=104  Identities=23%  Similarity=0.207  Sum_probs=77.2

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccCCCCCC-CCCCCCCE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS-SFVTVGVRDIQGQGFPD-EFSGLADS  184 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~~~-~~~~~~D~  184 (237)
                      ..+.+|||+.|=+|+++++.+.  +++.+|+.+|.|..+++.+++|+..++++ .++++...|+.+. +.. ...++||+
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~--gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~-l~~~~~~~~fD~  198 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAA--GGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKF-LKRLKKGGRFDL  198 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHH--TTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHH-HHHHHHTT-EEE
T ss_pred             cCCCceEEecCCCCHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH-HHHHhcCCCCCE
Confidence            3578999999999999976554  46678999999999999999999999875 5689999999751 110 11268999


Q ss_pred             EEEeCCCh-----------hchHHHHHhcccCCCEEEEEe
Q 026506          185 IFLDLPQP-----------WLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       185 v~~~~~~~-----------~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      |++|+|..           ..++..+.++|+|||.|++.+
T Consensus       199 IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s  238 (286)
T PF10672_consen  199 IILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS  238 (286)
T ss_dssp             EEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence            99999843           357888999999999987554

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PHA03411 putative methyltransferase; Provisional

Probab=99.12  E-value=1.7e-09  Score=86.18  Aligned_cols=115  Identities=9%  Similarity=0.008  Sum_probs=81.8

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ...+.+|||+|||+|.++..++... +..+++++|+++.+++.++++.     .+ +++..+|+.+.. ..   ..||+|
T Consensus        62 ~~~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~-----~~-v~~v~~D~~e~~-~~---~kFDlI  130 (279)
T PHA03411         62 AHCTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL-----PE-AEWITSDVFEFE-SN---EKFDVV  130 (279)
T ss_pred             cccCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC-----cC-CEEEECchhhhc-cc---CCCcEE
Confidence            3456799999999999998887764 3368999999999999998863     23 788899987522 22   679999


Q ss_pred             EEeCCCh-------------------------hchHHHHHhcccCCCEEEEEeCCH------HHHHHHHHHHHh-cCc
Q 026506          186 FLDLPQP-------------------------WLAIPSAKKMLKQDGILCSFSPCI------EQVQRSCESLRL-NFT  231 (237)
Q Consensus       186 ~~~~~~~-------------------------~~~l~~~~~~L~~gG~l~~~~~~~------~~~~~~~~~l~~-~f~  231 (237)
                      +.|+|-.                         .+.+......|+|+|.+.+.-...      -...+..+.+++ ||.
T Consensus       131 IsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~  208 (279)
T PHA03411        131 ISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLV  208 (279)
T ss_pred             EEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcE
Confidence            9987621                         124566678899999765442111      113566677777 664

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=99.12  E-value=7.7e-10  Score=89.18  Aligned_cols=106  Identities=20%  Similarity=0.250  Sum_probs=85.7

Q ss_pred             hcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEccccCCCCCCCCC
Q 026506          103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG--V-SSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       103 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ..+.+| .+||.||.|.|+.+..++++. +..+++.+|+++..++.+++.+....  . +.+++++..|..+  +-....
T Consensus        72 ~ah~~p-k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~--~v~~~~  147 (282)
T COG0421          72 LAHPNP-KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVE--FLRDCE  147 (282)
T ss_pred             hhCCCC-CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHH--HHHhCC
Confidence            445566 699999999999999999985 45899999999999999999876432  2 3678999999875  222122


Q ss_pred             CCCCEEEEeCCCh---------hchHHHHHhcccCCCEEEEE
Q 026506          180 GLADSIFLDLPQP---------WLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       180 ~~~D~v~~~~~~~---------~~~l~~~~~~L~~gG~l~~~  212 (237)
                      .+||+|++|..++         +++++.+.+.|+++|+++..
T Consensus       148 ~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         148 EKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             CcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            4799999987655         57899999999999999977

>PLN02740 Alcohol dehydrogenase-like

Probab=99.12  E-value=8.7e-10  Score=93.71  Aligned_cols=184  Identities=15%  Similarity=0.164  Sum_probs=108.6

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCC-C-------Cc----------eEE--eccCcEE-E
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKP-F-------GS----------MVF--SNKGGFV-Y   72 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~-------g~----------~~~--~~~~~~~-~   72 (237)
                      ..|++||||++....+        ||.|..|+.|..+.|...... +       |.          ...  ...|+|. |
T Consensus        85 ~~~~vGdrV~~~~~~~--------cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey  156 (381)
T PLN02740         85 EDLKAGDHVIPIFNGE--------CGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEY  156 (381)
T ss_pred             CcCCCCCEEEecCCCC--------CCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeE
Confidence            4689999999987666        888999988887777642210 0       00          000  0134444 4


Q ss_pred             EECCCHHHHhhhcCCc-----ccccc-cccHHH--HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCH
Q 026506           73 LLAPTPELWTLVLSHR-----TQILY-IADISF--VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHE  143 (237)
Q Consensus        73 ~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~--~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~  143 (237)
                      ...|....  ..++..     ...+. ....++  +....++++|++||.+|+|+ |..++++++..+ ..+|+++|.++
T Consensus       157 ~~v~~~~~--~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~~~~  233 (381)
T PLN02740        157 TVLDSACV--VKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARG-ASKIIGVDINP  233 (381)
T ss_pred             EEEehHHe--EECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCC-CCcEEEEcCCh
Confidence            44432221  111111     11111 111111  22346788999999999988 778888888863 34799999999


Q ss_pred             HHHHHHHHHHHHcCCCCcEEEEEc--cccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCC-CEEEEEeC
Q 026506          144 QRAASAREDFERTGVSSFVTVGVR--DIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFSP  214 (237)
Q Consensus       144 ~~~~~a~~~~~~~~~~~~i~~~~~--d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  214 (237)
                      +.++.+++    .|.+..++....  ++.+ .+.....+++|+|+.....+ ..++.+.+.+++| |++++++.
T Consensus       234 ~r~~~a~~----~Ga~~~i~~~~~~~~~~~-~v~~~~~~g~dvvid~~G~~-~~~~~a~~~~~~g~G~~v~~G~  301 (381)
T PLN02740        234 EKFEKGKE----MGITDFINPKDSDKPVHE-RIREMTGGGVDYSFECAGNV-EVLREAFLSTHDGWGLTVLLGI  301 (381)
T ss_pred             HHHHHHHH----cCCcEEEecccccchHHH-HHHHHhCCCCCEEEECCCCh-HHHHHHHHhhhcCCCEEEEEcc
Confidence            99998876    465432332211  1111 01111113699977655544 4788999999997 99887763

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=99.11  E-value=1.2e-09  Score=89.77  Aligned_cols=108  Identities=24%  Similarity=0.333  Sum_probs=91.3

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..+|.+|+|+.+|.|.+++.+|..-  ..+|+++|+||.+++.+++|+..+++.+.+..+.+|..+.....   +.+|.|
T Consensus       186 v~~GE~V~DmFAGVGpfsi~~Ak~g--~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~---~~aDrI  260 (341)
T COG2520         186 VKEGETVLDMFAGVGPFSIPIAKKG--RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL---GVADRI  260 (341)
T ss_pred             hcCCCEEEEccCCcccchhhhhhcC--CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc---ccCCEE
Confidence            4569999999999999999999873  34499999999999999999999999988999999998632222   679999


Q ss_pred             EEeCCC-hhchHHHHHhcccCCCEEEEEeCCHHH
Q 026506          186 FLDLPQ-PWLAIPSAKKMLKQDGILCSFSPCIEQ  218 (237)
Q Consensus       186 ~~~~~~-~~~~l~~~~~~L~~gG~l~~~~~~~~~  218 (237)
                      +++.|. ...++..+.+.+++||++..+....+.
T Consensus       261 im~~p~~a~~fl~~A~~~~k~~g~iHyy~~~~e~  294 (341)
T COG2520         261 IMGLPKSAHEFLPLALELLKDGGIIHYYEFVPED  294 (341)
T ss_pred             EeCCCCcchhhHHHHHHHhhcCcEEEEEeccchh
Confidence            998874 367899999999999999988765443

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.11  E-value=1.2e-09  Score=74.51  Aligned_cols=97  Identities=26%  Similarity=0.241  Sum_probs=73.5

Q ss_pred             EEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCC
Q 026506          111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP  190 (237)
Q Consensus       111 ~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~  190 (237)
                      +++|+|||.|..+..++.  ....+++++|.++..++.+++....... ..+++...|+.+.....  .+++|+|+.+.+
T Consensus         1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~d~i~~~~~   75 (107)
T cd02440           1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLA-DNVEVLKGDAEELPPEA--DESFDVIISDPP   75 (107)
T ss_pred             CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcccc-cceEEEEcChhhhcccc--CCceEEEEEccc
Confidence            489999999999988877  2457999999999999998864433333 34888889887633211  267999988665


Q ss_pred             C------hhchHHHHHhcccCCCEEEEE
Q 026506          191 Q------PWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       191 ~------~~~~l~~~~~~L~~gG~l~~~  212 (237)
                      .      ....++.+.+.|+|||.+++.
T Consensus        76 ~~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          76 LHHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             eeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence            3      246789999999999999854

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.10  E-value=1e-09  Score=87.63  Aligned_cols=185  Identities=17%  Similarity=0.146  Sum_probs=111.0

Q ss_pred             CCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCC--------CceEEeccCcEE-EEEC-CCHHHHh
Q 026506           13 TRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPF--------GSMVFSNKGGFV-YLLA-PTPELWT   82 (237)
Q Consensus        13 ~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------g~~~~~~~~~~~-~~~~-~~~~~~~   82 (237)
                      .+.||+||+|+-...-.        ||+|..|..+..+.|+.+-...        |..-....|... +.+. .+...|.
T Consensus        80 V~~vk~GD~Viplf~p~--------CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYT  151 (375)
T KOG0022|consen   80 VTTVKPGDHVIPLFTPQ--------CGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYT  151 (375)
T ss_pred             ccccCCCCEEeeccccC--------CCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEE
Confidence            46799999999766333        8999999988877776432211        111111112111 1111 0111111


Q ss_pred             hhcCCcccccc---------------cccHHHHHHhcCCCCCCEEEEEccCccHHH-HHHHHHhCCCcEEEEEeCCHHHH
Q 026506           83 LVLSHRTQILY---------------IADISFVIMYLELVPGCLVLESGTGSGSLT-TSLARAVAPTGHVYTFDFHEQRA  146 (237)
Q Consensus        83 ~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~vldiG~G~G~~~-~~~~~~~~~~~~v~~vD~~~~~~  146 (237)
                      -.......-+.               ......+...+++.||.++..+|.|.-+++ ++-++.. ++++++++|+|++..
T Consensus       152 Vv~~~~v~kId~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~-GAsrIIgvDiN~~Kf  230 (375)
T KOG0022|consen  152 VVDDISVAKIDPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAA-GASRIIGVDINPDKF  230 (375)
T ss_pred             EeecceeEecCCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhc-CcccEEEEecCHHHH
Confidence            00000111111               111123566778999999999999995554 4445554 568999999999999


Q ss_pred             HHHHHHHHHcCCCCcEEEEEccccC---CCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCC-CEEEEEe
Q 026506          147 ASAREDFERTGVSSFVTVGVRDIQG---QGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFS  213 (237)
Q Consensus       147 ~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~  213 (237)
                      +.|++    +|+.+-++..  |...   +.+.+.+++++|.-|....... ++.+++...+.| |.-++++
T Consensus       231 ~~ak~----fGaTe~iNp~--d~~~~i~evi~EmTdgGvDysfEc~G~~~-~m~~al~s~h~GwG~sv~iG  294 (375)
T KOG0022|consen  231 EKAKE----FGATEFINPK--DLKKPIQEVIIEMTDGGVDYSFECIGNVS-TMRAALESCHKGWGKSVVIG  294 (375)
T ss_pred             HHHHh----cCcceecChh--hccccHHHHHHHHhcCCceEEEEecCCHH-HHHHHHHHhhcCCCeEEEEE
Confidence            99988    5765434433  3332   1122334588999888776655 889999999888 8776554

>PLN02827 Alcohol dehydrogenase-like

Probab=99.10  E-value=1.3e-09  Score=92.47  Aligned_cols=184  Identities=17%  Similarity=0.178  Sum_probs=107.2

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCC---------------CceEE--eccCcEE-EEEC
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPF---------------GSMVF--SNKGGFV-YLLA   75 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------------g~~~~--~~~~~~~-~~~~   75 (237)
                      ..|++||||+.....+        ||.|.+|+.|..+.|...+...               |....  ...|++. |...
T Consensus        83 ~~~~~GdrV~~~~~~~--------cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~v  154 (378)
T PLN02827         83 TEFEKGDHVLTVFTGE--------CGSCRHCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVV  154 (378)
T ss_pred             cccCCCCEEEEecCCC--------CCCChhhhCcCcccccCccccccccccCCCcccccccCcccccccccccceeeEEe
Confidence            4689999999987666        8899999999888776432100               00000  0124444 3444


Q ss_pred             CCHHHHhhhcCC-----cccccccc-cHHH--HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHH
Q 026506           76 PTPELWTLVLSH-----RTQILYIA-DISF--VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRA  146 (237)
Q Consensus        76 ~~~~~~~~~~~~-----~~~~~~~~-~~~~--~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~  146 (237)
                      |....+  ..+.     ....+... ..+.  +....++.+|++||..|+|+ |.+++++++..+ ...++++|.+++..
T Consensus       155 ~~~~~~--~iP~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~~~~~~~  231 (378)
T PLN02827        155 HSGCAV--KVDPLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVDINPEKA  231 (378)
T ss_pred             chhheE--ECCCCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHH
Confidence            432211  1111     11111111 1111  22345678899999999988 778888888764 34688999999988


Q ss_pred             HHHHHHHHHcCCCCcEEEEE--ccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCC-CEEEEEeC
Q 026506          147 ASAREDFERTGVSSFVTVGV--RDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFSP  214 (237)
Q Consensus       147 ~~a~~~~~~~~~~~~i~~~~--~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  214 (237)
                      +.+++    .|++..++...  .++.+ .+.....+++|+|+.....+ ..+..+.+.+++| |++++++.
T Consensus       232 ~~a~~----lGa~~~i~~~~~~~~~~~-~v~~~~~~g~d~vid~~G~~-~~~~~~l~~l~~g~G~iv~~G~  296 (378)
T PLN02827        232 EKAKT----FGVTDFINPNDLSEPIQQ-VIKRMTGGGADYSFECVGDT-GIATTALQSCSDGWGLTVTLGV  296 (378)
T ss_pred             HHHHH----cCCcEEEcccccchHHHH-HHHHHhCCCCCEEEECCCCh-HHHHHHHHhhccCCCEEEEECC
Confidence            88866    46543222221  11111 11111124699977655443 3688899999999 99987764

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.09  E-value=1e-09  Score=85.09  Aligned_cols=93  Identities=17%  Similarity=0.195  Sum_probs=68.9

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..++.+|||+|||+|..+..++... +..+++++|+|+++++.|+++.     .+ +.+..+|+.+ +++.   +.||+|
T Consensus        41 ~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~-----~~-~~~~~~d~~~-~~~~---~sfD~V  109 (204)
T TIGR03587        41 LPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYL-----PN-INIIQGSLFD-PFKD---NFFDLV  109 (204)
T ss_pred             cCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhC-----CC-CcEEEeeccC-CCCC---CCEEEE
Confidence            4567899999999999999998875 4578999999999999998853     22 5677888774 4544   789999


Q ss_pred             EEeCC----C---hhchHHHHHhcccCCCEEEE
Q 026506          186 FLDLP----Q---PWLAIPSAKKMLKQDGILCS  211 (237)
Q Consensus       186 ~~~~~----~---~~~~l~~~~~~L~~gG~l~~  211 (237)
                      +++..    .   ....++++.+.+  ++.+++
T Consensus       110 ~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i  140 (204)
T TIGR03587       110 LTKGVLIHINPDNLPTAYRELYRCS--NRYILI  140 (204)
T ss_pred             EECChhhhCCHHHHHHHHHHHHhhc--CcEEEE
Confidence            86321    1   234677777776  445554

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=99.09  E-value=1.1e-09  Score=91.96  Aligned_cols=181  Identities=15%  Similarity=0.106  Sum_probs=106.5

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCC-----
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSH-----   87 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----   87 (237)
                      ..|++||||......+        |+.|.+|..|..+.|...+. .|   ....|++. |...|....  ..++.     
T Consensus        73 ~~~~vGd~V~~~~~~~--------c~~c~~c~~g~~~~c~~~~~-~g---~~~~G~~aey~~v~~~~~--~~lP~~~s~~  138 (347)
T PRK10309         73 DDLHPGDAVACVPLLP--------CFTCPECLRGFYSLCAKYDF-IG---SRRDGGNAEYIVVKRKNL--FALPTDMPIE  138 (347)
T ss_pred             CCCCCCCEEEECCCcC--------CCCCcchhCcCcccCCCcce-ec---cCCCCccceeEEeehHHe--EECcCCCCHH
Confidence            4689999999977555        88999999998777763221 11   11234443 334332221  11121     


Q ss_pred             cccccccccHHH-HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 026506           88 RTQILYIADISF-VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG  165 (237)
Q Consensus        88 ~~~~~~~~~~~~-~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~  165 (237)
                      .+..+.+..... .+......++++||..|+|+ |..+.++++..+ ...+++++.+++..+.+++    .|.+..++..
T Consensus       139 ~aa~~~~~~~~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~  213 (347)
T PRK10309        139 DGAFIEPITVGLHAFHLAQGCEGKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDINSEKLALAKS----LGAMQTFNSR  213 (347)
T ss_pred             HhhhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCceEecCc
Confidence            111111211111 23445677899999999988 778888888863 3458899999998888765    4543322222


Q ss_pred             EccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          166 VRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       166 ~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ..+..+ ......+..+|.+++|.......+..+.+.|++||++++++.
T Consensus       214 ~~~~~~-~~~~~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~  261 (347)
T PRK10309        214 EMSAPQ-IQSVLRELRFDQLILETAGVPQTVELAIEIAGPRAQLALVGT  261 (347)
T ss_pred             ccCHHH-HHHHhcCCCCCeEEEECCCCHHHHHHHHHHhhcCCEEEEEcc
Confidence            111110 000011146884455554444588999999999999998863

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=99.09  E-value=1.3e-09  Score=92.32  Aligned_cols=184  Identities=17%  Similarity=0.132  Sum_probs=106.8

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCC--CCc-------------eEEe--ccCcEE-EEEC
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKP--FGS-------------MVFS--NKGGFV-YLLA   75 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~g~-------------~~~~--~~~~~~-~~~~   75 (237)
                      ..|++||||.+....+        ||.|..|+.|..+.|......  +|.             ....  ..|++. |...
T Consensus        75 ~~~~~GdrV~~~~~~~--------cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v  146 (368)
T TIGR02818        75 TSVKVGDHVIPLYTAE--------CGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSKDGQPIYHYMGCSTFSEYTVV  146 (368)
T ss_pred             ccCCCCCEEEEcCCCC--------CCCChhhhCCCcccccCcccccccccccCCccccccCCCcccccccCccceeeEEe
Confidence            4689999999876556        899999999988777532100  000             0000  113333 3444


Q ss_pred             CCHHHHhhhcCC-----cccccc-cccHHH--HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHH
Q 026506           76 PTPELWTLVLSH-----RTQILY-IADISF--VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRA  146 (237)
Q Consensus        76 ~~~~~~~~~~~~-----~~~~~~-~~~~~~--~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~  146 (237)
                      |....+  .++.     ....+. +...+.  +.....++++++||..|+|+ |.+++++++.++ ..+|+++|.+++.+
T Consensus       147 ~~~~~~--~lP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~~  223 (368)
T TIGR02818       147 PEISLA--KINPAAPLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDINPAKF  223 (368)
T ss_pred             chhheE--ECCCCCCHHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHH
Confidence            322211  1111     111111 111111  22445788999999999988 778888888863 24799999999999


Q ss_pred             HHHHHHHHHcCCCCcEEEEE--ccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCC-CEEEEEeC
Q 026506          147 ASAREDFERTGVSSFVTVGV--RDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFSP  214 (237)
Q Consensus       147 ~~a~~~~~~~~~~~~i~~~~--~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  214 (237)
                      +.+++    .|.+..++...  .++.+ .+.....+++|+++.....+ ..+..+.+.++++ |+++.++.
T Consensus       224 ~~a~~----~Ga~~~i~~~~~~~~~~~-~v~~~~~~g~d~vid~~G~~-~~~~~~~~~~~~~~G~~v~~g~  288 (368)
T TIGR02818       224 ELAKK----LGATDCVNPNDYDKPIQE-VIVEITDGGVDYSFECIGNV-NVMRAALECCHKGWGESIIIGV  288 (368)
T ss_pred             HHHHH----hCCCeEEcccccchhHHH-HHHHHhCCCCCEEEECCCCH-HHHHHHHHHhhcCCCeEEEEec
Confidence            98876    46543232221  11110 01111114699977655443 3788889999886 99887764

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=99.09  E-value=1.5e-09  Score=91.47  Aligned_cols=185  Identities=15%  Similarity=0.020  Sum_probs=106.2

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccC-------CCCceEE--eccCcEE-EEECCCHHHHhh
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGK-------PFGSMVF--SNKGGFV-YLLAPTPELWTL   83 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~g~~~~--~~~~~~~-~~~~~~~~~~~~   83 (237)
                      ..|++||||.+....+        ||.|..|..|..+.|.....       ..|....  ...|++. |...|....+  
T Consensus        74 ~~~~~GdrV~~~~~~~--------cg~c~~c~~g~~~~c~~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~--  143 (358)
T TIGR03451        74 TDVAPGDYVVLNWRAV--------CGQCRACKRGRPWYCFDTHNATQKMTLTDGTELSPALGIGAFAEKTLVHAGQCT--  143 (358)
T ss_pred             cccCCCCEEEEccCCC--------CCCChHHhCcCcccCcCccccccccccccCcccccccccccccceEEEehhheE--
Confidence            4689999999977666        88899998887766652110       0010000  0123333 3333322111  


Q ss_pred             hcCC-----cccccc-cccHH--HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026506           84 VLSH-----RTQILY-IADIS--FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE  154 (237)
Q Consensus        84 ~~~~-----~~~~~~-~~~~~--~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~  154 (237)
                      .++.     .+..+. ....+  .+....++.++++||..|+|+ |..+.++++..+ ..+|+++|.+++..+.+++   
T Consensus       144 ~ip~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~~~~~~~~~~~~---  219 (358)
T TIGR03451       144 KVDPAADPAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAG-ASKIIAVDIDDRKLEWARE---  219 (358)
T ss_pred             ECCCCCChhHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH---
Confidence            1111     111111 11111  123345678999999999988 778888888763 3469999999999998866   


Q ss_pred             HcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          155 RTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       155 ~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                       .|.+..++....+..+.......+.++|+|+-....+ ..++.+.+.+++||++++++.
T Consensus       220 -~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~~-~~~~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       220 -FGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVGRP-ETYKQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             -cCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCCCH-HHHHHHHHHhccCCEEEEECC
Confidence             4653323322222211000001113699977555433 478889999999999998764

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=99.09  E-value=2.1e-09  Score=87.18  Aligned_cols=89  Identities=20%  Similarity=0.293  Sum_probs=70.0

Q ss_pred             HHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC
Q 026506           98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD  176 (237)
Q Consensus        98 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~  176 (237)
                      ..+++.+.+.++..++|.+||.|+.+..++...++.++|+++|.++++++.+++++..   .+++.++++|+.+.. ...
T Consensus         9 ~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~   85 (296)
T PRK00050          9 DEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLA   85 (296)
T ss_pred             HHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHH
Confidence            3477788888999999999999999999999976568999999999999999998754   345999999987611 111


Q ss_pred             CCCCCCCEEEEeC
Q 026506          177 EFSGLADSIFLDL  189 (237)
Q Consensus       177 ~~~~~~D~v~~~~  189 (237)
                      .....+|.|++|.
T Consensus        86 ~~~~~vDgIl~DL   98 (296)
T PRK00050         86 EGLGKVDGILLDL   98 (296)
T ss_pred             cCCCccCEEEECC
Confidence            1012699998754

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=99.08  E-value=6.7e-10  Score=88.43  Aligned_cols=125  Identities=23%  Similarity=0.247  Sum_probs=91.8

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC---CCcEEEEEccccCCCCCCCCCC-CCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV---SSFVTVGVRDIQGQGFPDEFSG-LAD  183 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~i~~~~~d~~~~~~~~~~~~-~~D  183 (237)
                      ...+||.||.|.|..+..++++- +..+++++|+++..++.+++.+.....   +.+++++.+|...  +-..... +||
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~--~l~~~~~~~yD  152 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRK--FLKETQEEKYD  152 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHH--HHHTSSST-EE
T ss_pred             CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHH--HHHhccCCccc
Confidence            56899999999999998888763 347899999999999999998765321   3569999999875  1111114 799


Q ss_pred             EEEEeCCCh---------hchHHHHHhcccCCCEEEEEeC--C--HHHHHHHHHHHHhcCccccc
Q 026506          184 SIFLDLPQP---------WLAIPSAKKMLKQDGILCSFSP--C--IEQVQRSCESLRLNFTGKES  235 (237)
Q Consensus       184 ~v~~~~~~~---------~~~l~~~~~~L~~gG~l~~~~~--~--~~~~~~~~~~l~~~f~~v~~  235 (237)
                      +|++|..++         .++++.+.+.|+|+|.+++...  .  ......+.+.+++.|..+..
T Consensus       153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~  217 (246)
T PF01564_consen  153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKP  217 (246)
T ss_dssp             EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEE
T ss_pred             EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEE
Confidence            999988764         3689999999999999997652  2  34456667777777776544

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>cd08230 glucose_DH Glucose dehydrogenase

Probab=99.08  E-value=2.2e-09  Score=90.36  Aligned_cols=179  Identities=20%  Similarity=0.164  Sum_probs=104.0

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccC-CCCceEEeccCcEE-EEECCCHHHHh--hhcCCcc
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGK-PFGSMVFSNKGGFV-YLLAPTPELWT--LVLSHRT   89 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~g~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~   89 (237)
                      ..|++||||.+....+        ||.|.+|+.|..+.|+.... ..|.  ....|.+. |...|....+.  ..++...
T Consensus        76 ~~~~vGdrV~~~~~~~--------cg~C~~c~~g~~~~c~~~~~~~~g~--~~~~G~~aey~~~~~~~~~~~P~~~~~~a  145 (355)
T cd08230          76 SGLSPGDLVVPTVRRP--------PGKCLNCRIGRPDFCETGEYTERGI--KGLHGFMREYFVDDPEYLVKVPPSLADVG  145 (355)
T ss_pred             CCCCCCCEEEeccccC--------CCcChhhhCcCcccCCCcceeccCc--CCCCccceeEEEeccccEEECCCCCCcce
Confidence            3699999999876555        88899998887777753210 0010  01234443 33333222111  0111111


Q ss_pred             cccccccHHH-HH-------HhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeC---CHHHHHHHHHHHHHcC
Q 026506           90 QILYIADISF-VI-------MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDF---HEQRAASAREDFERTG  157 (237)
Q Consensus        90 ~~~~~~~~~~-~~-------~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~---~~~~~~~a~~~~~~~~  157 (237)
                      ....+..... .+       ......++++||.+|+|+ |.++.++++..+  .++++++.   +++.++.+++    .|
T Consensus       146 ~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~~----~G  219 (355)
T cd08230         146 VLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVEE----LG  219 (355)
T ss_pred             eecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHH----cC
Confidence            1122222111 11       112256889999999998 888888888863  47998886   6788887765    45


Q ss_pred             CCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          158 VSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       158 ~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .+. +.....+..+  ..  ..+.+|+||.....+. .+..+.+.|+++|++++++.
T Consensus       220 a~~-v~~~~~~~~~--~~--~~~~~d~vid~~g~~~-~~~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         220 ATY-VNSSKTPVAE--VK--LVGEFDLIIEATGVPP-LAFEALPALAPNGVVILFGV  270 (355)
T ss_pred             CEE-ecCCccchhh--hh--hcCCCCEEEECcCCHH-HHHHHHHHccCCcEEEEEec
Confidence            432 2222222211  11  1256999776665433 78899999999999998764

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.08  E-value=2e-09  Score=90.61  Aligned_cols=116  Identities=22%  Similarity=0.214  Sum_probs=81.1

Q ss_pred             CEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC--CCCCC----------
Q 026506          110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDE----------  177 (237)
Q Consensus       110 ~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~----------  177 (237)
                      .++||++||+|.+++.+++..   .+|+++|.++.+++.+++|+..+++.+ +++..+|+.+.  .+...          
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~-v~~~~~d~~~~l~~~~~~~~~~~~~~~~  283 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDN-VQIIRMSAEEFTQAMNGVREFNRLKGID  283 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHhhccccccccccc
Confidence            579999999999999888763   589999999999999999999988875 99999998641  11100          


Q ss_pred             -CCCCCCEEEEeCCChhchHHHHHhcc-cCCCEEEEEeCCHHHHHHHHHHHHhcCc
Q 026506          178 -FSGLADSIFLDLPQPWLAIPSAKKML-KQDGILCSFSPCIEQVQRSCESLRLNFT  231 (237)
Q Consensus       178 -~~~~~D~v~~~~~~~~~~l~~~~~~L-~~gG~l~~~~~~~~~~~~~~~~l~~~f~  231 (237)
                       ....||+|++|+|... .-+.+.+.| ++++.++ ++-...++.+-+..|.++|.
T Consensus       284 ~~~~~~D~v~lDPPR~G-~~~~~l~~l~~~~~ivy-vSC~p~tlarDl~~L~~gY~  337 (362)
T PRK05031        284 LKSYNFSTIFVDPPRAG-LDDETLKLVQAYERILY-ISCNPETLCENLETLSQTHK  337 (362)
T ss_pred             ccCCCCCEEEECCCCCC-CcHHHHHHHHccCCEEE-EEeCHHHHHHHHHHHcCCcE
Confidence             0125899999999543 333333333 3555555 33333556666666655554

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.08  E-value=1.2e-09  Score=83.12  Aligned_cols=119  Identities=24%  Similarity=0.267  Sum_probs=90.0

Q ss_pred             CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC-----CCCCCC
Q 026506          109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE-----FSGLAD  183 (237)
Q Consensus       109 ~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~-----~~~~~D  183 (237)
                      +.+|||||+|||..+.++++.+ |.....-.|.++..+...+..+...+..|.......|+....++-.     ..+.||
T Consensus        26 ~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D  104 (204)
T PF06080_consen   26 GTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFD  104 (204)
T ss_pred             CceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcc
Confidence            3369999999999999999998 5578888999999988888888877877755667778775433321     125799


Q ss_pred             EEEE-eC------CChhchHHHHHhcccCCCEEEEEeCCH-------HHHHHHHHHHHh
Q 026506          184 SIFL-DL------PQPWLAIPSAKKMLKQDGILCSFSPCI-------EQVQRSCESLRL  228 (237)
Q Consensus       184 ~v~~-~~------~~~~~~l~~~~~~L~~gG~l~~~~~~~-------~~~~~~~~~l~~  228 (237)
                      .|+. |+      .....+++.+.+.|++||.|++|+|+.       +..+++-..||+
T Consensus       105 ~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~  163 (204)
T PF06080_consen  105 AIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRS  163 (204)
T ss_pred             eeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhc
Confidence            9985 22      122357899999999999999999875       335666666665

The function of this family is unknown.

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.07  E-value=3.3e-09  Score=87.11  Aligned_cols=81  Identities=17%  Similarity=0.215  Sum_probs=61.7

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEE-ccccC--CCCCCCCCCCCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-GVSSFVTVGV-RDIQG--QGFPDEFSGLAD  183 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~i~~~~-~d~~~--~~~~~~~~~~~D  183 (237)
                      .+.++||||||+|.+...++... ...+++++|+++.+++.|+++++.+ ++.+++++.. .|...  ..+. ...+.||
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~-~~~~~fD  191 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGII-HKNERFD  191 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhccc-ccCCceE
Confidence            46799999999998887777765 3578999999999999999999998 7877787754 22221  1111 0126799


Q ss_pred             EEEEeCC
Q 026506          184 SIFLDLP  190 (237)
Q Consensus       184 ~v~~~~~  190 (237)
                      +|++|+|
T Consensus       192 livcNPP  198 (321)
T PRK11727        192 ATLCNPP  198 (321)
T ss_pred             EEEeCCC
Confidence            9999987

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.07  E-value=2.3e-09  Score=89.87  Aligned_cols=124  Identities=19%  Similarity=0.171  Sum_probs=84.4

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC--
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE--  177 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~--  177 (237)
                      +.+.++..+ .++||++||+|.+++.+++..   .+|+++|+++++++.|++|+..+++.+ +++..+|+.+. ++..  
T Consensus       190 v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~-v~~~~~d~~~~-~~~~~~  263 (353)
T TIGR02143       190 ACEVTQGSK-GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDN-VQIIRMSAEEF-TQAMNG  263 (353)
T ss_pred             HHHHhhcCC-CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEEcCHHHH-HHHHhh
Confidence            334444333 479999999999999888774   589999999999999999999998876 99999998641 1100  


Q ss_pred             ---C---------CCCCCEEEEeCCChhchHHHHHh-cccCCCEEEEEeCCHHHHHHHHHHHHhcCc
Q 026506          178 ---F---------SGLADSIFLDLPQPWLAIPSAKK-MLKQDGILCSFSPCIEQVQRSCESLRLNFT  231 (237)
Q Consensus       178 ---~---------~~~~D~v~~~~~~~~~~l~~~~~-~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~  231 (237)
                         .         ...||+|++|+|... ..+.+.+ +.+|++.++ ++-...++.+-+..|.++|.
T Consensus       264 ~~~~~~~~~~~~~~~~~d~v~lDPPR~G-~~~~~l~~l~~~~~ivY-vsC~p~tlaRDl~~L~~~Y~  328 (353)
T TIGR02143       264 VREFRRLKGIDLKSYNCSTIFVDPPRAG-LDPDTCKLVQAYERILY-ISCNPETLKANLEQLSETHR  328 (353)
T ss_pred             ccccccccccccccCCCCEEEECCCCCC-CcHHHHHHHHcCCcEEE-EEcCHHHHHHHHHHHhcCcE
Confidence               0         023899999999543 3333322 234665555 33334566666666655443

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.06  E-value=1.2e-09  Score=92.24  Aligned_cols=102  Identities=20%  Similarity=0.200  Sum_probs=83.2

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL  187 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~  187 (237)
                      ++.+|||++||+|..++.++...+ ..+|+++|+++.+++.+++|++.+++.+ +++...|+.. .+..  ...||+|++
T Consensus        57 ~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~-~~v~~~Da~~-~l~~--~~~fD~V~l  131 (382)
T PRK04338         57 PRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLEN-EKVFNKDANA-LLHE--ERKFDVVDI  131 (382)
T ss_pred             CCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEhhhHHH-HHhh--cCCCCEEEE
Confidence            357999999999999999988753 4689999999999999999999998876 7788888864 1221  156999999


Q ss_pred             eCCCh-hchHHHHHhcccCCCEEEEEeC
Q 026506          188 DLPQP-WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       188 ~~~~~-~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      |++.. ..++..+.+.+++||.+++...
T Consensus       132 DP~Gs~~~~l~~al~~~~~~gilyvSAt  159 (382)
T PRK04338        132 DPFGSPAPFLDSAIRSVKRGGLLCVTAT  159 (382)
T ss_pred             CCCCCcHHHHHHHHHHhcCCCEEEEEec
Confidence            98644 3577888899999999997644

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.06  E-value=1.4e-09  Score=88.59  Aligned_cols=89  Identities=21%  Similarity=0.299  Sum_probs=73.2

Q ss_pred             HHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC
Q 026506           97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD  176 (237)
Q Consensus        97 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  176 (237)
                      +..++..+.+.++++|||+|||+|.++..++..   ..+++++|+++.+++.+++++...+...++++..+|+.+..+  
T Consensus        25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--   99 (294)
T PTZ00338         25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--   99 (294)
T ss_pred             HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--
Confidence            334777788889999999999999999998876   267999999999999999998876644459999999986333  


Q ss_pred             CCCCCCCEEEEeCCChh
Q 026506          177 EFSGLADSIFLDLPQPW  193 (237)
Q Consensus       177 ~~~~~~D~v~~~~~~~~  193 (237)
                         ..+|.|+.|.|-..
T Consensus       100 ---~~~d~VvaNlPY~I  113 (294)
T PTZ00338        100 ---PYFDVCVANVPYQI  113 (294)
T ss_pred             ---cccCEEEecCCccc
Confidence               45899999988553

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.05  E-value=8.5e-09  Score=81.46  Aligned_cols=99  Identities=26%  Similarity=0.374  Sum_probs=71.5

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..++.+|||+|||+|.++..++..   ..+++++|+++.+++.|+++....+..+++++..+|+.   ...   +.||+|
T Consensus        61 ~~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~---~~~---~~fD~v  131 (230)
T PRK07580         61 DLTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE---SLL---GRFDTV  131 (230)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch---hcc---CCcCEE
Confidence            456789999999999999888865   25699999999999999999887776455888888853   222   679999


Q ss_pred             EEeC-----CCh--hchHHHHHhcccCCCEEEEEeC
Q 026506          186 FLDL-----PQP--WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       186 ~~~~-----~~~--~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ++..     +.+  ...++.+.+.++ +|.++.+.+
T Consensus       132 ~~~~~l~~~~~~~~~~~l~~l~~~~~-~~~~i~~~~  166 (230)
T PRK07580        132 VCLDVLIHYPQEDAARMLAHLASLTR-GSLIFTFAP  166 (230)
T ss_pred             EEcchhhcCCHHHHHHHHHHHHhhcC-CeEEEEECC
Confidence            7632     211  245666666554 444444544

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=99.04  E-value=1.3e-09  Score=88.48  Aligned_cols=103  Identities=25%  Similarity=0.305  Sum_probs=82.8

Q ss_pred             HhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCC
Q 026506          102 MYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL  181 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  181 (237)
                      ..-++-.+.+|||+|||+|-+++..|++  ++.+|+++|-+ ++.+.|++.+..++..+.++++.+.+.+..+|.   .+
T Consensus        54 ~n~~lf~dK~VlDVGcGtGILS~F~akA--GA~~V~aVe~S-~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~---eK  127 (346)
T KOG1499|consen   54 QNKHLFKDKTVLDVGCGTGILSMFAAKA--GARKVYAVEAS-SIADFARKIVKDNGLEDVITVIKGKVEDIELPV---EK  127 (346)
T ss_pred             cchhhcCCCEEEEcCCCccHHHHHHHHh--CcceEEEEech-HHHHHHHHHHHhcCccceEEEeecceEEEecCc---cc
Confidence            3334567899999999999999888777  46899999975 556999999999999998999999888765663   78


Q ss_pred             CCEEEEeCCChhchHHHH--------HhcccCCCEEE
Q 026506          182 ADSIFLDLPQPWLAIPSA--------KKMLKQDGILC  210 (237)
Q Consensus       182 ~D~v~~~~~~~~~~l~~~--------~~~L~~gG~l~  210 (237)
                      +|+|+...-..+.+++++        -+.|+|||.++
T Consensus       128 VDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  128 VDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             eeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence            999998776665444443        46789999886

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=99.04  E-value=6.4e-10  Score=82.12  Aligned_cols=77  Identities=25%  Similarity=0.315  Sum_probs=56.2

Q ss_pred             CEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC-CCCCCCEEEEe
Q 026506          110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE-FSGLADSIFLD  188 (237)
Q Consensus       110 ~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~~~~D~v~~~  188 (237)
                      ..|+|+.||.|+.++++|+..   .+|+++|+++.+++.|+.|++..|+.++++++.+|+.+. .... ....+|+||++
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~-~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFEL-LKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHH-GGGB------SEEEE-
T ss_pred             CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHH-HhhccccccccEEEEC
Confidence            379999999999999999984   689999999999999999999999888899999999862 1111 00128999998


Q ss_pred             CC
Q 026506          189 LP  190 (237)
Q Consensus       189 ~~  190 (237)
                      +|
T Consensus        77 PP   78 (163)
T PF09445_consen   77 PP   78 (163)
T ss_dssp             --
T ss_pred             CC
Confidence            86

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=99.02  E-value=3.2e-09  Score=89.81  Aligned_cols=186  Identities=17%  Similarity=0.179  Sum_probs=106.1

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCC---------------CceEE--eccCcEE-EEEC
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPF---------------GSMVF--SNKGGFV-YLLA   75 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------------g~~~~--~~~~~~~-~~~~   75 (237)
                      ..|++||||......+        ||.|..|+.|..+.|...+...               |....  ...|++. |...
T Consensus        76 ~~~~vGdrV~~~~~~~--------cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v  147 (368)
T cd08300          76 TSVKPGDHVIPLYTPE--------CGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGKPIYHFMGTSTFSEYTVV  147 (368)
T ss_pred             ccCCCCCEEEEcCCCC--------CCCChhhcCCCcCcCCCccccccccccCCCccccccCCcccccccccccceeEEEE
Confidence            4589999999876555        8999999988777775332100               00000  0112333 3333


Q ss_pred             CCHHHHhh--hcC-Ccccccc-cccHHH--HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 026506           76 PTPELWTL--VLS-HRTQILY-IADISF--VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAAS  148 (237)
Q Consensus        76 ~~~~~~~~--~~~-~~~~~~~-~~~~~~--~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~  148 (237)
                      |....+..  .++ .....+. +...+.  +.....++++++||..|+|+ |.++.++++..+ ..++++++.+++.++.
T Consensus       148 ~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~~~~~~~~~~  226 (368)
T cd08300         148 AEISVAKINPEAPLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAG-ASRIIGIDINPDKFEL  226 (368)
T ss_pred             chhceEeCCCCCChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHH
Confidence            32211110  011 1111111 111111  23446688999999999887 777888888863 3479999999999888


Q ss_pred             HHHHHHHcCCCCcEEEEEc--cccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCC-CEEEEEeC
Q 026506          149 AREDFERTGVSSFVTVGVR--DIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFSP  214 (237)
Q Consensus       149 a~~~~~~~~~~~~i~~~~~--d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  214 (237)
                      +++    .|.+..++....  ++.+ .......+++|+|+...... ..+..+.+.++++ |+++.++.
T Consensus       227 ~~~----lGa~~~i~~~~~~~~~~~-~v~~~~~~g~d~vid~~g~~-~~~~~a~~~l~~~~G~~v~~g~  289 (368)
T cd08300         227 AKK----FGATDCVNPKDHDKPIQQ-VLVEMTDGGVDYTFECIGNV-KVMRAALEACHKGWGTSVIIGV  289 (368)
T ss_pred             HHH----cCCCEEEcccccchHHHH-HHHHHhCCCCcEEEECCCCh-HHHHHHHHhhccCCCeEEEEcc
Confidence            865    465432332221  1111 01111124699987655433 3788899999987 99987753

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PRK06202 hypothetical protein; Provisional

Probab=99.02  E-value=4.5e-09  Score=83.24  Aligned_cols=93  Identities=20%  Similarity=0.154  Sum_probs=66.0

Q ss_pred             CCCCCCEEEEEccCccHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCC
Q 026506          105 ELVPGCLVLESGTGSGSLTTSLARAV---APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL  181 (237)
Q Consensus       105 ~~~~~~~vldiG~G~G~~~~~~~~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  181 (237)
                      ...++.+|||+|||+|.++..++...   ++..+++++|+++++++.|+++....+    +.+...+......+.   +.
T Consensus        57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l~~~~---~~  129 (232)
T PRK06202         57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDELVAEG---ER  129 (232)
T ss_pred             CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccccccC---CC
Confidence            34567899999999999988887653   334689999999999999988754322    444555443322332   68


Q ss_pred             CCEEEEe-----CCCh--hchHHHHHhccc
Q 026506          182 ADSIFLD-----LPQP--WLAIPSAKKMLK  204 (237)
Q Consensus       182 ~D~v~~~-----~~~~--~~~l~~~~~~L~  204 (237)
                      ||+|+++     .+++  ..+++++.+.++
T Consensus       130 fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~  159 (232)
T PRK06202        130 FDVVTSNHFLHHLDDAEVVRLLADSAALAR  159 (232)
T ss_pred             ccEEEECCeeecCChHHHHHHHHHHHHhcC
Confidence            9999864     3332  358889998887

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.01  E-value=3.4e-09  Score=82.72  Aligned_cols=106  Identities=11%  Similarity=-0.035  Sum_probs=76.7

Q ss_pred             cCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH------------HcCCCCcEEEEEccccC
Q 026506          104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE------------RTGVSSFVTVGVRDIQG  171 (237)
Q Consensus       104 ~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~------------~~~~~~~i~~~~~d~~~  171 (237)
                      +...++.+||+.|||.|..+..++.+   +.+|+++|+|+.+++.+.+...            ... ...+++.++|+++
T Consensus        39 l~~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~-~~~i~~~~gD~f~  114 (226)
T PRK13256         39 LNINDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK-GDDIEIYVADIFN  114 (226)
T ss_pred             cCCCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceec-cCceEEEEccCcC
Confidence            34456789999999999999999887   3679999999999998765210            011 1248999999997


Q ss_pred             CCCCCCCCCCCCEEEEe-----CC--ChhchHHHHHhcccCCCEEEEEe
Q 026506          172 QGFPDEFSGLADSIFLD-----LP--QPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       172 ~~~~~~~~~~~D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ........+.||.|+..     .+  ....+.+.+.++|+|||.++++.
T Consensus       115 l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~  163 (226)
T PRK13256        115 LPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV  163 (226)
T ss_pred             CCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence            43222223679998632     22  22368899999999999987664

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=99.01  E-value=2.9e-09  Score=83.38  Aligned_cols=87  Identities=26%  Similarity=0.320  Sum_probs=74.2

Q ss_pred             cHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCC
Q 026506           96 DISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP  175 (237)
Q Consensus        96 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  175 (237)
                      .+..+++.+++++++.|||+|.|||.++..+++.   +++|+++|+++.++....+++......+++++..+|+...++|
T Consensus        46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P  122 (315)
T KOG0820|consen   46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP  122 (315)
T ss_pred             HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc
Confidence            3345788889999999999999999999999988   3899999999999999999886555557899999999875554


Q ss_pred             CCCCCCCCEEEEeCC
Q 026506          176 DEFSGLADSIFLDLP  190 (237)
Q Consensus       176 ~~~~~~~D~v~~~~~  190 (237)
                           .||.++.|.|
T Consensus       123 -----~fd~cVsNlP  132 (315)
T KOG0820|consen  123 -----RFDGCVSNLP  132 (315)
T ss_pred             -----ccceeeccCC
Confidence                 4999998765

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.00  E-value=6.3e-09  Score=79.18  Aligned_cols=124  Identities=19%  Similarity=0.156  Sum_probs=83.0

Q ss_pred             HHHHHHhcCCCC--CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC-CC
Q 026506           97 ISFVIMYLELVP--GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QG  173 (237)
Q Consensus        97 ~~~~~~~~~~~~--~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~  173 (237)
                      ....++++....  ..-|||||||+|..+..+...   ....+++|+|+.|++.|.+.-- .|     ++..+|+-+ .+
T Consensus        37 ~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~e~-eg-----dlil~DMG~Glp  107 (270)
T KOG1541|consen   37 AERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVEREL-EG-----DLILCDMGEGLP  107 (270)
T ss_pred             HHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHhhh-hc-----CeeeeecCCCCC
Confidence            334556665555  678999999999988766654   3678999999999999987321 12     345566653 45


Q ss_pred             CCCCCCCCCCEEEEeCC------------Ch----hchHHHHHhcccCCCEEE--EEeCCHHHHHHHHHHHHh-cCcc
Q 026506          174 FPDEFSGLADSIFLDLP------------QP----WLAIPSAKKMLKQDGILC--SFSPCIEQVQRSCESLRL-NFTG  232 (237)
Q Consensus       174 ~~~~~~~~~D~v~~~~~------------~~----~~~l~~~~~~L~~gG~l~--~~~~~~~~~~~~~~~l~~-~f~~  232 (237)
                      +.+   +.||-++.-..            .|    ..++..++..|++|++.+  +|--+..|.+.++..... ||..
T Consensus       108 frp---GtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~G  182 (270)
T KOG1541|consen  108 FRP---GTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFGG  182 (270)
T ss_pred             CCC---CccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccCC
Confidence            555   88998864111            11    136788999999999865  334445666666664444 7753

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.99  E-value=9.4e-09  Score=82.69  Aligned_cols=87  Identities=25%  Similarity=0.304  Sum_probs=70.1

Q ss_pred             cHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCC
Q 026506           96 DISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP  175 (237)
Q Consensus        96 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  175 (237)
                      ....+++.++..++++|||+|||+|.++..+++.   ..+++++|+++.+++.+++++..  . .++++..+|+.+..+ 
T Consensus        17 ~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~--~-~~v~ii~~D~~~~~~-   89 (258)
T PRK14896         17 VVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA--A-GNVEIIEGDALKVDL-   89 (258)
T ss_pred             HHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc--C-CCEEEEEeccccCCc-
Confidence            3344777778888999999999999999999987   26899999999999999988753  2 349999999976333 


Q ss_pred             CCCCCCCCEEEEeCCChh
Q 026506          176 DEFSGLADSIFLDLPQPW  193 (237)
Q Consensus       176 ~~~~~~~D~v~~~~~~~~  193 (237)
                          ..+|.|+.|.|-..
T Consensus        90 ----~~~d~Vv~NlPy~i  103 (258)
T PRK14896         90 ----PEFNKVVSNLPYQI  103 (258)
T ss_pred             ----hhceEEEEcCCccc
Confidence                34799999988543

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=98.99  E-value=7.5e-09  Score=87.60  Aligned_cols=186  Identities=16%  Similarity=0.145  Sum_probs=105.3

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCC----------------CCceEEe--ccCcEE-EEE
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKP----------------FGSMVFS--NKGGFV-YLL   74 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----------------~g~~~~~--~~~~~~-~~~   74 (237)
                      ..|++||||++....+        |+.|.+|..|..+.|......                .|.....  ..|++. |..
T Consensus        76 ~~~~~GdrV~~~~~~~--------c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~  147 (369)
T cd08301          76 TDLKPGDHVLPVFTGE--------CKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTV  147 (369)
T ss_pred             CccccCCEEEEccCCC--------CCCCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeEEE
Confidence            4689999999877555        899999999888777643211                0000000  123333 333


Q ss_pred             CCCHHHHhh--hcCC-cccccc-cccHH--HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHH
Q 026506           75 APTPELWTL--VLSH-RTQILY-IADIS--FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAA  147 (237)
Q Consensus        75 ~~~~~~~~~--~~~~-~~~~~~-~~~~~--~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~  147 (237)
                      .|....+..  .++. ....+. ....+  .+....++.+|++||..|+|+ |.++.++++..+ ..++++++.+++..+
T Consensus       148 v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~~~~~~~  226 (369)
T cd08301         148 VHVGCVAKINPEAPLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRG-ASRIIGVDLNPSKFE  226 (369)
T ss_pred             EecccEEECCCCCCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHH
Confidence            332211100  0010 111111 11111  123345688999999999887 777888888763 347999999999988


Q ss_pred             HHHHHHHHcCCCCcEEEEEc--cccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCC-CEEEEEeC
Q 026506          148 SAREDFERTGVSSFVTVGVR--DIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFSP  214 (237)
Q Consensus       148 ~a~~~~~~~~~~~~i~~~~~--d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  214 (237)
                      .+++    .|.+..++....  ++. ..+.....+.+|+++-.... ...+..+.+.+++| |+++.++.
T Consensus       227 ~~~~----~Ga~~~i~~~~~~~~~~-~~v~~~~~~~~d~vid~~G~-~~~~~~~~~~~~~~~g~~v~~g~  290 (369)
T cd08301         227 QAKK----FGVTEFVNPKDHDKPVQ-EVIAEMTGGGVDYSFECTGN-IDAMISAFECVHDGWGVTVLLGV  290 (369)
T ss_pred             HHHH----cCCceEEcccccchhHH-HHHHHHhCCCCCEEEECCCC-hHHHHHHHHHhhcCCCEEEEECc
Confidence            8866    465432322211  111 00111111468987654443 34778889999996 99987754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.99  E-value=4.4e-09  Score=76.56  Aligned_cols=109  Identities=17%  Similarity=0.224  Sum_probs=85.8

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC--CCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--FPD  176 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~  176 (237)
                      .|+...++..|.-|||+|.|+|.++.+++++-.+...++++|.++++.....+..     +. .+++.+|+.+..  +.+
T Consensus        39 ~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~-~~ii~gda~~l~~~l~e  112 (194)
T COG3963          39 KMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PG-VNIINGDAFDLRTTLGE  112 (194)
T ss_pred             HHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CC-ccccccchhhHHHHHhh
Confidence            4677778899999999999999999999988666788999999999999888753     22 557788887632  333


Q ss_pred             CCCCCCCEEEEeCC-------ChhchHHHHHhcccCCCEEEEEe
Q 026506          177 EFSGLADSIFLDLP-------QPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       177 ~~~~~~D~v~~~~~-------~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ..+..||.|++..|       ...+.++++...|.+||.++.+.
T Consensus       113 ~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft  156 (194)
T COG3963         113 HKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT  156 (194)
T ss_pred             cCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence            33467999997665       22368999999999999987553

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.98  E-value=3.6e-09  Score=88.68  Aligned_cols=123  Identities=24%  Similarity=0.312  Sum_probs=79.0

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC------
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ------  172 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------  172 (237)
                      .++++++..++ .+||+.||.|.+++.++...   .+|+++|+++++++.|++|+..+++.+ +++..+++.+.      
T Consensus       188 ~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n-~~f~~~~~~~~~~~~~~  262 (352)
T PF05958_consen  188 QALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDN-VEFIRGDAEDFAKALAK  262 (352)
T ss_dssp             HHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--S-EEEEE--SHHCCCHHCC
T ss_pred             HHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCc-ceEEEeeccchhHHHHh
Confidence            46677777766 89999999999999998764   789999999999999999999999987 99887765321      


Q ss_pred             --CCCC-----CCCCCCCEEEEeCCChh---chHHHHHhcccCCCEEEEEeCCH-HHHHHHHHHHHhcCc
Q 026506          173 --GFPD-----EFSGLADSIFLDLPQPW---LAIPSAKKMLKQDGILCSFSPCI-EQVQRSCESLRLNFT  231 (237)
Q Consensus       173 --~~~~-----~~~~~~D~v~~~~~~~~---~~l~~~~~~L~~gG~l~~~~~~~-~~~~~~~~~l~~~f~  231 (237)
                        .+..     .....+|+|++|+|...   .+++.+.   ++ .+++ |..|. .++.+-+..|.++|.
T Consensus       263 ~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~---~~-~~iv-YvSCnP~tlaRDl~~L~~~y~  327 (352)
T PF05958_consen  263 AREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIK---KL-KRIV-YVSCNPATLARDLKILKEGYK  327 (352)
T ss_dssp             S-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHH---HS-SEEE-EEES-HHHHHHHHHHHHCCEE
T ss_pred             hHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHh---cC-CeEE-EEECCHHHHHHHHHHHhhcCE
Confidence              0000     00136899999998553   2344332   23 3555 55565 667777777776654

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.98  E-value=6.5e-09  Score=87.33  Aligned_cols=105  Identities=15%  Similarity=0.096  Sum_probs=85.9

Q ss_pred             CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506          109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD  188 (237)
Q Consensus       109 ~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~  188 (237)
                      +.+|||+.||+|..++.++....+..+|+++|+++++++.+++|++.++..+ +++...|+... +.. ....||+|++|
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~-~~v~~~Da~~~-l~~-~~~~fDvIdlD  121 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVEN-IEVPNEDAANV-LRY-RNRKFHVIDID  121 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEchhHHHH-HHH-hCCCCCEEEeC
Confidence            3589999999999999999875445789999999999999999999888765 88888888741 111 12569999999


Q ss_pred             CCCh-hchHHHHHhcccCCCEEEEEeCCH
Q 026506          189 LPQP-WLAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       189 ~~~~-~~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                      +... ..++..+.+.+++||.+++.++-.
T Consensus       122 PfGs~~~fld~al~~~~~~glL~vTaTD~  150 (374)
T TIGR00308       122 PFGTPAPFVDSAIQASAERGLLLVTATDT  150 (374)
T ss_pred             CCCCcHHHHHHHHHhcccCCEEEEEeccc
Confidence            8654 368999999999999999886543

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.98  E-value=1.2e-08  Score=81.91  Aligned_cols=114  Identities=23%  Similarity=0.219  Sum_probs=80.1

Q ss_pred             HHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC
Q 026506           97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD  176 (237)
Q Consensus        97 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  176 (237)
                      ...+++.++..++++|||+|||+|.++..+++..   ..++++|+++.+++.+++++..   ..++++..+|+.+..++ 
T Consensus        18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~-   90 (253)
T TIGR00755        18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP-   90 (253)
T ss_pred             HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh-
Confidence            3447777788889999999999999999999874   4699999999999999987643   23489999999764332 


Q ss_pred             CCCCCCC---EEEEeCCChhchHHHHHhcc-cCCCEEEEEeCCHHHHHHH
Q 026506          177 EFSGLAD---SIFLDLPQPWLAIPSAKKML-KQDGILCSFSPCIEQVQRS  222 (237)
Q Consensus       177 ~~~~~~D---~v~~~~~~~~~~l~~~~~~L-~~gG~l~~~~~~~~~~~~~  222 (237)
                          .+|   .|+.|.|-.. .-..+.+.+ .++...+++.-..+..+++
T Consensus        91 ----~~d~~~~vvsNlPy~i-~~~il~~ll~~~~~~~~~~~~q~e~a~Rl  135 (253)
T TIGR00755        91 ----DFPKQLKVVSNLPYNI-SSPLIFKLLEKPKFRLAVLMVQKEVAERL  135 (253)
T ss_pred             ----HcCCcceEEEcCChhh-HHHHHHHHhccCCCceEEEEehHHHHHHH
Confidence                355   8888887544 334444444 5555544444433433333

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.95  E-value=5.9e-08  Score=72.99  Aligned_cols=158  Identities=18%  Similarity=0.235  Sum_probs=107.2

Q ss_pred             CCCceEEeccCcEEEEECCCHHHHhhhcCCcccccccccHHHH---HHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCc
Q 026506           58 PFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFV---IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTG  134 (237)
Q Consensus        58 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~  134 (237)
                      -||+.+....+..|+.+.|.....               .+.+   +..+.+++|.+||-+|+.+|+...+++.-.+ .+
T Consensus        38 VYGE~ii~~~~~eYR~Wnp~RSKL---------------aAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G  101 (231)
T COG1889          38 VYGERIIKVEGEEYREWNPRRSKL---------------AAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EG  101 (231)
T ss_pred             ccCceeEEecCcceeeeCcchhHH---------------HHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CC
Confidence            467776666666666666643211               1112   3345688999999999999999999999986 68


Q ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCChhc---hHHHHHhcccCCCEEEE
Q 026506          135 HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWL---AIPSAKKMLKQDGILCS  211 (237)
Q Consensus       135 ~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~---~l~~~~~~L~~gG~l~~  211 (237)
                      .++++|.++......-..++..  .| +-.+.+|+....-....-+.+|+|+.|...+.+   +..++...||+||.+++
T Consensus       102 ~iYaVEfs~R~~reLl~~a~~R--~N-i~PIL~DA~~P~~Y~~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i  178 (231)
T COG1889         102 RIYAVEFSPRPMRELLDVAEKR--PN-IIPILEDARKPEKYRHLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVI  178 (231)
T ss_pred             cEEEEEecchhHHHHHHHHHhC--CC-ceeeecccCCcHHhhhhcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEE
Confidence            9999999998766655554432  24 778889987421112233579999999877654   57888999999997664


Q ss_pred             Ee--CC-------HHHHHHHHHHHHh-cCcccc
Q 026506          212 FS--PC-------IEQVQRSCESLRL-NFTGKE  234 (237)
Q Consensus       212 ~~--~~-------~~~~~~~~~~l~~-~f~~v~  234 (237)
                      ..  -+       .+-.++..+.|++ +|.-++
T Consensus       179 ~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e  211 (231)
T COG1889         179 AIKARSIDVTADPEEVFKDEVEKLEEGGFEILE  211 (231)
T ss_pred             EEEeecccccCCHHHHHHHHHHHHHhcCceeeE
Confidence            42  11       2224556667777 676444

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.94  E-value=3e-08  Score=81.58  Aligned_cols=98  Identities=23%  Similarity=0.309  Sum_probs=68.9

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC----CCcEEEEEccccCCCCCCCCCCCCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV----SSFVTVGVRDIQGQGFPDEFSGLAD  183 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~~~~D  183 (237)
                      ++.+|||+|||+|.++..++..   ..+|+++|+++.+++.++++....+.    ...+++...|+.+  + .   +.||
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~--l-~---~~fD  214 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES--L-S---GKYD  214 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh--c-C---CCcC
Confidence            5789999999999999888875   36899999999999999998875421    1236777888653  2 2   6799


Q ss_pred             EEEE-----eCCChh--chHHHHHhcccCCCEEEEEeCC
Q 026506          184 SIFL-----DLPQPW--LAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       184 ~v~~-----~~~~~~--~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      +|++     +.+...  ..++.+. .+.++|.++.+.+.
T Consensus       215 ~Vv~~~vL~H~p~~~~~~ll~~l~-~l~~g~liIs~~p~  252 (315)
T PLN02585        215 TVTCLDVLIHYPQDKADGMIAHLA-SLAEKRLIISFAPK  252 (315)
T ss_pred             EEEEcCEEEecCHHHHHHHHHHHH-hhcCCEEEEEeCCc
Confidence            9864     333321  2344444 45677776655553

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.94  E-value=9.9e-09  Score=78.20  Aligned_cols=118  Identities=19%  Similarity=0.258  Sum_probs=89.2

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC----CC-CC
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD----EF-SG  180 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~-~~  180 (237)
                      +.++..|+|+|+.+|+++..+++.+++...|+++|+.|-           ....+ +.++++|+.......    .. ..
T Consensus        43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----------~~~~~-V~~iq~d~~~~~~~~~l~~~l~~~  110 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----------KPIPG-VIFLQGDITDEDTLEKLLEALGGA  110 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----------ccCCC-ceEEeeeccCccHHHHHHHHcCCC
Confidence            578999999999999999999999877778999999662           12334 888999988632221    11 13


Q ss_pred             CCCEEEEeCCCh----------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHhcCccccc
Q 026506          181 LADSIFLDLPQP----------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGKES  235 (237)
Q Consensus       181 ~~D~v~~~~~~~----------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~v~~  235 (237)
                      .+|+|++|+...                ..+++-+...|+|||.+++-.-..+..+..+..++..|..|+.
T Consensus       111 ~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~~  181 (205)
T COG0293         111 PVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKI  181 (205)
T ss_pred             CcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeEE
Confidence            479999887532                1357778889999999987766667778888888888877654

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=98.91  E-value=2.7e-08  Score=83.32  Aligned_cols=95  Identities=16%  Similarity=0.214  Sum_probs=66.7

Q ss_pred             cCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCC
Q 026506          104 LELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA  182 (237)
Q Consensus       104 ~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  182 (237)
                      +..++|++||.+|+|+ |.++.++++++.+..+++++|.+++.++.+++    .+...    ...+     +.+.  .++
T Consensus       159 ~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~~~----~~~~-----~~~~--~g~  223 (341)
T cd08237         159 IAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADETY----LIDD-----IPED--LAV  223 (341)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCcee----ehhh-----hhhc--cCC
Confidence            3467899999999998 66777777764334689999999999888865    23211    1111     1111  258


Q ss_pred             CEEEEeCCC--hhchHHHHHhcccCCCEEEEEe
Q 026506          183 DSIFLDLPQ--PWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       183 D~v~~~~~~--~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      |+||-..+.  ....++.+.+.|++||++++++
T Consensus       224 d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G  256 (341)
T cd08237         224 DHAFECVGGRGSQSAINQIIDYIRPQGTIGLMG  256 (341)
T ss_pred             cEEEECCCCCccHHHHHHHHHhCcCCcEEEEEe
Confidence            998765553  3357899999999999999876

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.91  E-value=9e-09  Score=83.40  Aligned_cols=85  Identities=22%  Similarity=0.239  Sum_probs=67.6

Q ss_pred             HHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC
Q 026506           98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE  177 (237)
Q Consensus        98 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  177 (237)
                      ..+++.+++.++++|||+|||+|.++..++...   .+++++|+++.+++.+++++..    .++++..+|+.+..++. 
T Consensus        32 ~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~-  103 (272)
T PRK00274         32 DKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSE-  103 (272)
T ss_pred             HHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHH-
Confidence            346777888899999999999999999999883   4899999999999999887632    34999999998643332 


Q ss_pred             CCCCCCEEEEeCCCh
Q 026506          178 FSGLADSIFLDLPQP  192 (237)
Q Consensus       178 ~~~~~D~v~~~~~~~  192 (237)
                        ..+|.|+.|+|-.
T Consensus       104 --~~~~~vv~NlPY~  116 (272)
T PRK00274        104 --LQPLKVVANLPYN  116 (272)
T ss_pred             --cCcceEEEeCCcc
Confidence              1158889998743

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.91  E-value=8.1e-09  Score=88.76  Aligned_cols=98  Identities=24%  Similarity=0.329  Sum_probs=74.2

Q ss_pred             CCEEEEEccCccHHHHHHHHH---hCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          109 GCLVLESGTGSGSLTTSLARA---VAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       109 ~~~vldiG~G~G~~~~~~~~~---~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      +..|+|+|||+|.++...+++   .+...+|+++|-|+.+...+++.+..+++.++|+++.+|+.+...+    .++|+|
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp----ekvDII  262 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP----EKVDII  262 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS----S-EEEE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC----CceeEE
Confidence            578999999999998665543   3445799999999999988888878888888899999999875444    579999


Q ss_pred             EEeCC-------ChhchHHHHHhcccCCCEEE
Q 026506          186 FLDLP-------QPWLAIPSAKKMLKQDGILC  210 (237)
Q Consensus       186 ~~~~~-------~~~~~l~~~~~~L~~gG~l~  210 (237)
                      +...-       ...+.|..+.+.|||+|+++
T Consensus       263 VSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  263 VSELLGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             EE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             EEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            97542       12357888899999999986

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=98.90  E-value=3.4e-08  Score=82.35  Aligned_cols=170  Identities=21%  Similarity=0.154  Sum_probs=103.3

Q ss_pred             CCCCCCCEEEEEEc-CCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc---
Q 026506           14 RCIKEGDLVIVYER-HDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR---   88 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---   88 (237)
                      ..+++||||.+... .+        |+.|..|+.|..+.|..... .|.   ...|++. |...|....  ..++..   
T Consensus        76 ~~~~~Gd~V~~~~~~~~--------c~~c~~c~~g~~~~c~~~~~-~g~---~~~G~~aey~~v~~~~~--~~lP~~~~~  141 (329)
T TIGR02822        76 GGFAVGDRVGIAWLRRT--------CGVCRYCRRGAENLCPASRY-TGW---DTDGGYAEYTTVPAAFA--YRLPTGYDD  141 (329)
T ss_pred             cccCCCCEEEEcCccCc--------CCCChHHhCcCcccCCCccc-CCc---ccCCcceeEEEeccccE--EECCCCCCH
Confidence            46899999988542 23        78888898888777764221 221   1123333 333332211  111111   


Q ss_pred             ---ccccccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 026506           89 ---TQILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT  163 (237)
Q Consensus        89 ---~~~~~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~  163 (237)
                         ..+..+...+ ..+...++++|++||..|+|+ |..+.++++..+  .++++++.+++.++.+++    .|.+..++
T Consensus       142 ~~aa~l~~~~~ta~~~~~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~~~a~~----~Ga~~vi~  215 (329)
T TIGR02822       142 VELAPLLCAGIIGYRALLRASLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAARRLALA----LGAASAGG  215 (329)
T ss_pred             HHhHHHhccchHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHH----hCCceecc
Confidence               1111111111 133456788999999999887 667777777753  479999999999888877    56543222


Q ss_pred             EEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          164 VGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       164 ~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .     .+  ...   +.+|+++...... ..+..+.+.|++||++++++.
T Consensus       216 ~-----~~--~~~---~~~d~~i~~~~~~-~~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       216 A-----YD--TPP---EPLDAAILFAPAG-GLVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             c-----cc--cCc---ccceEEEECCCcH-HHHHHHHHhhCCCcEEEEEec
Confidence            1     11  111   4588766543333 478999999999999998774

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=98.90  E-value=1.8e-08  Score=82.43  Aligned_cols=128  Identities=21%  Similarity=0.260  Sum_probs=91.5

Q ss_pred             CcccccccccHHHHH--HhcCCCCCCEEEEEccCccHHHHHHHHHhCCC---cEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 026506           87 HRTQILYIADISFVI--MYLELVPGCLVLESGTGSGSLTTSLARAVAPT---GHVYTFDFHEQRAASAREDFERTGVSSF  161 (237)
Q Consensus        87 ~~~~~~~~~~~~~~~--~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~  161 (237)
                      .....++..++..++  ..++++|+++|||+++.+|+-++++.+.+...   +.+++-|.++.++...++........+ 
T Consensus       132 ~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~-  210 (375)
T KOG2198|consen  132 TGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPN-  210 (375)
T ss_pred             cccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcc-
Confidence            345556666655544  56789999999999999999999998887532   479999999999999988876554333 


Q ss_pred             EEEEEccccC---C---CCCCCCCCCCCEEEEeCCCh----------------------------hchHHHHHhcccCCC
Q 026506          162 VTVGVRDIQG---Q---GFPDEFSGLADSIFLDLPQP----------------------------WLAIPSAKKMLKQDG  207 (237)
Q Consensus       162 i~~~~~d~~~---~---~~~~~~~~~~D~v~~~~~~~----------------------------~~~l~~~~~~L~~gG  207 (237)
                      +.+...|+..   .   ...+.....||.|++|.|+.                            ..++.+..++||+||
T Consensus       211 ~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG  290 (375)
T KOG2198|consen  211 LLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGG  290 (375)
T ss_pred             eeeecccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCC
Confidence            4444433322   1   01111124799999988743                            146888999999999


Q ss_pred             EEEEEeCCH
Q 026506          208 ILCSFSPCI  216 (237)
Q Consensus       208 ~l~~~~~~~  216 (237)
                      +++ |++|.
T Consensus       291 ~lV-YSTCS  298 (375)
T KOG2198|consen  291 RLV-YSTCS  298 (375)
T ss_pred             EEE-EeccC
Confidence            998 88885

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=98.88  E-value=3.4e-08  Score=83.51  Aligned_cols=185  Identities=17%  Similarity=0.156  Sum_probs=104.5

Q ss_pred             CCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeecccccc-CCCCc-------------eE--EeccCcEE-EEEC
Q 026506           13 TRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIG-KPFGS-------------MV--FSNKGGFV-YLLA   75 (237)
Q Consensus        13 ~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~g~-------------~~--~~~~~~~~-~~~~   75 (237)
                      ...+++||||+.....+        |+.|.+|..|..+.|.... ...|.             ..  ....|++. |...
T Consensus        74 v~~~~~GdrV~~~~~~~--------c~~c~~c~~g~~~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~ae~~~v  145 (365)
T cd08277          74 VTNLKPGDKVIPLFIGQ--------CGECSNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGTSTFSQYTVV  145 (365)
T ss_pred             CccCCCCCEEEECCCCC--------CCCCchhcCcCcccCcCccccccccccCCccccccCCcccccccccccceeeEEE
Confidence            34689999998866555        8889999888777765211 00000             00  00123333 3333


Q ss_pred             CCHHHHhhhcCC-----cccccc-cccHHH--HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHH
Q 026506           76 PTPELWTLVLSH-----RTQILY-IADISF--VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRA  146 (237)
Q Consensus        76 ~~~~~~~~~~~~-----~~~~~~-~~~~~~--~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~  146 (237)
                      +...  ...++.     ....+. +...+.  +.....++++++||.+|+|+ |..+.++++..+ ..+|++++.+++..
T Consensus       146 ~~~~--~~~lP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~  222 (365)
T cd08277         146 DENY--VAKIDPAAPLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAG-ASRIIGVDINEDKF  222 (365)
T ss_pred             chhh--eEECCCCCCHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHH
Confidence            3211  111111     111111 111111  23445678999999999987 777788888763 34799999999998


Q ss_pred             HHHHHHHHHcCCCCcEEEEEcc--ccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCC-CEEEEEeC
Q 026506          147 ASAREDFERTGVSSFVTVGVRD--IQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFSP  214 (237)
Q Consensus       147 ~~a~~~~~~~~~~~~i~~~~~d--~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  214 (237)
                      +.+++    .|.+..+.....+  +.+ .+.....+++|+|+...... ..+..+.+.|+++ |+++.++.
T Consensus       223 ~~~~~----~ga~~~i~~~~~~~~~~~-~~~~~~~~g~d~vid~~g~~-~~~~~~~~~l~~~~G~~v~~g~  287 (365)
T cd08277         223 EKAKE----FGATDFINPKDSDKPVSE-VIREMTGGGVDYSFECTGNA-DLMNEALESTKLGWGVSVVVGV  287 (365)
T ss_pred             HHHHH----cCCCcEeccccccchHHH-HHHHHhCCCCCEEEECCCCh-HHHHHHHHhcccCCCEEEEEcC
Confidence            88865    4654322222111  110 01111114699977655433 4788899999885 99987764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.88  E-value=3.3e-08  Score=78.79  Aligned_cols=100  Identities=25%  Similarity=0.286  Sum_probs=78.1

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      +....+..+..+|+|+|+|.|.++..+++.. |..+++..|. |+.++.+++       .+++++..+|+. ..+|    
T Consensus        92 ~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f-~~~P----  157 (241)
T PF00891_consen   92 LLEAFDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFF-DPLP----  157 (241)
T ss_dssp             HHHHSTTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TT-TCCS----
T ss_pred             hhccccccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc-------ccccccccccHH-hhhc----
Confidence            4555667777899999999999999999886 6789999998 888888877       356999999998 5565    


Q ss_pred             CCCCEEEEeC-----CCh--hchHHHHHhcccCC--CEEEEEeC
Q 026506          180 GLADSIFLDL-----PQP--WLAIPSAKKMLKQD--GILCSFSP  214 (237)
Q Consensus       180 ~~~D~v~~~~-----~~~--~~~l~~~~~~L~~g--G~l~~~~~  214 (237)
                      . +|++++..     ++.  ..+|+++.+.|+||  |+|+++..
T Consensus       158 ~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~  200 (241)
T PF00891_consen  158 V-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEM  200 (241)
T ss_dssp             S-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred             c-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence            4 99998632     222  25899999999999  99997753

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.87  E-value=8.5e-09  Score=85.27  Aligned_cols=127  Identities=18%  Similarity=0.153  Sum_probs=86.3

Q ss_pred             ccccccccHHH-HHHhcCCCCCCEEEEEccCccHHHHHHHHHh------CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 026506           89 TQILYIADISF-VIMYLELVPGCLVLESGTGSGSLTTSLARAV------APTGHVYTFDFHEQRAASAREDFERTGVSSF  161 (237)
Q Consensus        89 ~~~~~~~~~~~-~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~------~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~  161 (237)
                      .+...|..+.. ++..+...++.+|+|.+||+|.+...+...+      ....+++|+|+++.....|+-++...+....
T Consensus        26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~  105 (311)
T PF02384_consen   26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNS  105 (311)
T ss_dssp             GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCB
T ss_pred             ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccc
Confidence            45556666654 6777888888999999999999998887753      2457899999999999999988776664332


Q ss_pred             -EEEEEccccCCCCCCCCCCCCCEEEEeCCCh--------------------------hchHHHHHhcccCCCEEEEEeC
Q 026506          162 -VTVGVRDIQGQGFPDEFSGLADSIFLDLPQP--------------------------WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       162 -i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~--------------------------~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                       ..+..+|........ ....||+|+.++|--                          +.+++.+.+.|++||+++++.|
T Consensus       106 ~~~i~~~d~l~~~~~~-~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp  184 (311)
T PF02384_consen  106 NINIIQGDSLENDKFI-KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP  184 (311)
T ss_dssp             GCEEEES-TTTSHSCT-ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cccccccccccccccc-cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence             457788876422211 126799999987611                          1368889999999999988887


Q ss_pred             CH
Q 026506          215 CI  216 (237)
Q Consensus       215 ~~  216 (237)
                      ..
T Consensus       185 ~~  186 (311)
T PF02384_consen  185 NG  186 (311)
T ss_dssp             HH
T ss_pred             ch
Confidence            53

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.84  E-value=3.3e-08  Score=79.81  Aligned_cols=98  Identities=26%  Similarity=0.266  Sum_probs=78.4

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ...+..|||+|||+|.++...+..  +..+|+++|- .+|.+.|++.++.+.+.++|.++.+.+.+..+|    ++.|++
T Consensus       175 DF~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP----Ek~Dvi  247 (517)
T KOG1500|consen  175 DFQDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIELP----EKVDVI  247 (517)
T ss_pred             ccCCcEEEEecCCccHHHHHHHHh--CcceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccCc----hhccEE
Confidence            346789999999999999777665  5689999996 578999999998888888899999988875566    579999


Q ss_pred             EEeCCChh-------chHHHHHhcccCCCEEE
Q 026506          186 FLDLPQPW-------LAIPSAKKMLKQDGILC  210 (237)
Q Consensus       186 ~~~~~~~~-------~~l~~~~~~L~~gG~l~  210 (237)
                      +..+-..-       +..-.+.+.|+|.|.++
T Consensus       248 ISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf  279 (517)
T KOG1500|consen  248 ISEPMGYMLVNERMLESYLHARKWLKPNGKMF  279 (517)
T ss_pred             EeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence            87664332       23334679999999886

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=98.84  E-value=2.5e-08  Score=83.77  Aligned_cols=175  Identities=18%  Similarity=0.148  Sum_probs=101.5

Q ss_pred             CCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCC------c--
Q 026506           18 EGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSH------R--   88 (237)
Q Consensus        18 ~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~--   88 (237)
                      +||||.+....+        ||.|..|+.|..+.|..... .|..   ..|++. |...|....+  .++.      .  
T Consensus        76 ~GdrV~~~~~~~--------cg~c~~c~~g~~~~c~~~~~-~g~~---~~G~~ae~~~v~~~~~~--~ip~~~~~~~~~~  141 (349)
T TIGR03201        76 IGKAVIVPAVIP--------CGECELCKTGRGTICRAQKM-PGND---MQGGFASHIVVPAKGLC--VVDEARLAAAGLP  141 (349)
T ss_pred             CCCEEEECCCCC--------CCCChhhhCcCcccCCCCCc-cCcC---CCCcccceEEechHHeE--ECCcccccccCCC
Confidence            999999987666        88889998888777753211 1211   124443 3333322111  1111      0  


Q ss_pred             ---cc-ccccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcE
Q 026506           89 ---TQ-ILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFV  162 (237)
Q Consensus        89 ---~~-~~~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i  162 (237)
                         .. +..+...+ ..+....++++++|+.+|+|+ |..+.++++..+  .++++++.+++.++.+++    .|.+..+
T Consensus       142 ~~~~a~~~~~~~ta~~a~~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~~----~Ga~~~i  215 (349)
T TIGR03201       142 LEHVSVVADAVTTPYQAAVQAGLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMKG----FGADLTL  215 (349)
T ss_pred             HHHhhhhcchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH----hCCceEe
Confidence               00 01111111 123345678899999999988 788888888863  479999999999988866    3543323


Q ss_pred             EEEEc---cccCCCCCC-CCCCCCC----EEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          163 TVGVR---DIQGQGFPD-EFSGLAD----SIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       163 ~~~~~---d~~~~~~~~-~~~~~~D----~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +....   ++.+ .... ..+.++|    +|+... .....++.+.+.|++||++++++.
T Consensus       216 ~~~~~~~~~~~~-~~~~~t~~~g~d~~~d~v~d~~-g~~~~~~~~~~~l~~~G~iv~~G~  273 (349)
T TIGR03201       216 NPKDKSAREVKK-LIKAFAKARGLRSTGWKIFECS-GSKPGQESALSLLSHGGTLVVVGY  273 (349)
T ss_pred             cCccccHHHHHH-HHHhhcccCCCCCCcCEEEECC-CChHHHHHHHHHHhcCCeEEEECc
Confidence            22221   1111 0110 0113455    555444 434478889999999999998763

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.84  E-value=1.2e-09  Score=83.55  Aligned_cols=114  Identities=21%  Similarity=0.126  Sum_probs=79.9

Q ss_pred             cccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc
Q 026506           90 QILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI  169 (237)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~  169 (237)
                      ..-.|...+.++..++..+-.++||+|||||..+..+....   .++.++|+|++|++.|.++    +.-+  ...+.|.
T Consensus       107 ~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea  177 (287)
T COG4976         107 GYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK----GLYD--TLYVAEA  177 (287)
T ss_pred             cCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc----cchH--HHHHHHH
Confidence            33445666667777777778899999999999998888774   6799999999999999885    3222  1223333


Q ss_pred             cCCCCCCCCCCCCCEEEE-e----CCChhchHHHHHhcccCCCEEEEEe
Q 026506          170 QGQGFPDEFSGLADSIFL-D----LPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       170 ~~~~~~~~~~~~~D~v~~-~----~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .. -.+.....+||+|.. |    ...-..++..+...|+|||.+.+.+
T Consensus       178 ~~-Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSv  225 (287)
T COG4976         178 VL-FLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSV  225 (287)
T ss_pred             HH-HhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEe
Confidence            21 011122368999864 2    2333457888899999999998665

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.84  E-value=1.3e-08  Score=79.43  Aligned_cols=104  Identities=25%  Similarity=0.181  Sum_probs=73.6

Q ss_pred             HhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-c-----C-----CCCcEEEEEcccc
Q 026506          102 MYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER-T-----G-----VSSFVTVGVRDIQ  170 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~-----~-----~~~~i~~~~~d~~  170 (237)
                      ..+...++.+||+.|||.|.....++.+   +.+|+++|+++.+++.+.+.... .     +     -..+|++.++|++
T Consensus        31 ~~l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF  107 (218)
T PF05724_consen   31 DSLALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFF  107 (218)
T ss_dssp             HHHTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TT
T ss_pred             HhcCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccc
Confidence            3355678889999999999999999886   37999999999999988442111 0     0     0124789999998


Q ss_pred             CCCCCCCCCCCCCEEEEe-------CCChhchHHHHHhcccCCCEEE
Q 026506          171 GQGFPDEFSGLADSIFLD-------LPQPWLAIPSAKKMLKQDGILC  210 (237)
Q Consensus       171 ~~~~~~~~~~~~D~v~~~-------~~~~~~~l~~~~~~L~~gG~l~  210 (237)
                      +  ++....++||+|+-.       +....+..+.+.++|+|||.++
T Consensus       108 ~--l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~l  152 (218)
T PF05724_consen  108 E--LPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGL  152 (218)
T ss_dssp             T--GGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEE
T ss_pred             c--CChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEE
Confidence            7  322222579998742       2233468999999999999943

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.83  E-value=1.4e-08  Score=76.69  Aligned_cols=120  Identities=23%  Similarity=0.199  Sum_probs=72.3

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--CCCcEEEEEccccCCCCCC-CCCCCC
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG--VSSFVTVGVRDIQGQGFPD-EFSGLA  182 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~-~~~~~~  182 (237)
                      ...+.+|||+|||+|..++.++... +..+|+..|.++ .++.++.|++.++  ....+.+...|+.+..... .....|
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~  120 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF  120 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred             hcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence            4678899999999999988888774 457999999988 9999999999876  4455788887775411000 112579


Q ss_pred             CEEEE-eC----CChhchHHHHHhcccCCCEEEEEeCCH-HHHHHHHHHHH
Q 026506          183 DSIFL-DL----PQPWLAIPSAKKMLKQDGILCSFSPCI-EQVQRSCESLR  227 (237)
Q Consensus       183 D~v~~-~~----~~~~~~l~~~~~~L~~gG~l~~~~~~~-~~~~~~~~~l~  227 (237)
                      |+|+. |.    .....++..+.++|+++|.+++..+.. ....++.+.++
T Consensus       121 D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R~~~~~~F~~~~~  171 (173)
T PF10294_consen  121 DVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRRRKSEQEFFDRLK  171 (173)
T ss_dssp             SEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S-TGGCHHHHHH-
T ss_pred             CEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEecHHHHHHHHHhh
Confidence            99875 22    233357778888999999855444322 33455555554

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=98.81  E-value=8.6e-08  Score=80.90  Aligned_cols=177  Identities=19%  Similarity=0.207  Sum_probs=99.8

Q ss_pred             CCCCCCCCEEEEEEc-CCcEEEEEEcCCCeeeeccceeeccccccCCC------CceEEeccCcEE-EEECCCHHHHhhh
Q 026506           13 TRCIKEGDLVIVYER-HDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPF------GSMVFSNKGGFV-YLLAPTPELWTLV   84 (237)
Q Consensus        13 ~~~~~~Gd~V~i~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------g~~~~~~~~~~~-~~~~~~~~~~~~~   84 (237)
                      ...|++||||++... .+        ||.|.+|+.|..+.|+......      |.   ...|++. |...|....  ..
T Consensus        85 v~~~~vGdrV~~~~~~~~--------Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~---~~~G~~aey~~v~~~~~--~~  151 (360)
T PLN02586         85 VKKFKEGDRVGVGVIVGS--------CKSCESCDQDLENYCPKMIFTYNSIGHDGT---KNYGGYSDMIVVDQHFV--LR  151 (360)
T ss_pred             CCccCCCCEEEEccccCc--------CCCCccccCCCcccCCCccccccccccCCC---cCCCccceEEEEchHHe--ee
Confidence            346899999986542 34        8999999999888886321100      11   1134444 444443221  11


Q ss_pred             cCCc-----ccccccccH-HH-HHHh-cCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHH-HHHHHHH
Q 026506           85 LSHR-----TQILYIADI-SF-VIMY-LELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAA-SAREDFE  154 (237)
Q Consensus        85 ~~~~-----~~~~~~~~~-~~-~~~~-~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~-~a~~~~~  154 (237)
                      ++..     +..+..... .. .+.. ....++++||..|+|+ |..+.++++..+  .++++++.+++... .+++   
T Consensus       152 lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~G--a~vi~~~~~~~~~~~~~~~---  226 (360)
T PLN02586        152 FPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISSSSNKEDEAINR---  226 (360)
T ss_pred             CCCCCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCcchhhhHHHh---
Confidence            1211     111111111 11 2222 2356899999999988 888888888863  46888877765433 3333   


Q ss_pred             HcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          155 RTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       155 ~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                       .|.+..++....+    .+.... +.+|+|+.....+ ..++.+.+.|++||+++.++.
T Consensus       227 -~Ga~~vi~~~~~~----~~~~~~-~~~D~vid~~g~~-~~~~~~~~~l~~~G~iv~vG~  279 (360)
T PLN02586        227 -LGADSFLVSTDPE----KMKAAI-GTMDYIIDTVSAV-HALGPLLGLLKVNGKLITLGL  279 (360)
T ss_pred             -CCCcEEEcCCCHH----HHHhhc-CCCCEEEECCCCH-HHHHHHHHHhcCCcEEEEeCC
Confidence             4643312111111    111111 3589987555433 378889999999999997753

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.81  E-value=1.3e-08  Score=78.55  Aligned_cols=106  Identities=18%  Similarity=0.171  Sum_probs=67.7

Q ss_pred             HhcCCCCCC-EEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506          102 MYLELVPGC-LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG  180 (237)
Q Consensus       102 ~~~~~~~~~-~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  180 (237)
                      ......++. .++|+|||+|.-+..++.+.   .+|+++|+++.+++.|++.....-..........+..+  +.. ..+
T Consensus        26 ~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~--L~g-~e~   99 (261)
T KOG3010|consen   26 KIASRTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVD--LLG-GEE   99 (261)
T ss_pred             HHHhhCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCcccccccccc--ccC-CCc
Confidence            334445555 88999999997777777774   78999999999999998853211111111222222221  221 127


Q ss_pred             CCCEEEEeCC----ChhchHHHHHhcccCCC-EEEEEe
Q 026506          181 LADSIFLDLP----QPWLAIPSAKKMLKQDG-ILCSFS  213 (237)
Q Consensus       181 ~~D~v~~~~~----~~~~~l~~~~~~L~~gG-~l~~~~  213 (237)
                      ++|+|++.-.    +...+.+.+.+.||+.| .+.++.
T Consensus       100 SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iavW~  137 (261)
T KOG3010|consen  100 SVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAVWN  137 (261)
T ss_pred             ceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEEEE
Confidence            8999876443    33468899999998766 666654

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.81  E-value=2.5e-07  Score=71.29  Aligned_cols=85  Identities=24%  Similarity=0.336  Sum_probs=61.7

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC-C-CCCCCCCCCCCE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-Q-GFPDEFSGLADS  184 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~~~~D~  184 (237)
                      .++.+|||+|||+|.++..++...  ...++++|+++++++.++++    +    +++...|+.+ . .++.   +.||+
T Consensus        12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~----~----~~~~~~d~~~~l~~~~~---~sfD~   78 (194)
T TIGR02081        12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVAR----G----VNVIQGDLDEGLEAFPD---KSFDY   78 (194)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHc----C----CeEEEEEhhhcccccCC---CCcCE
Confidence            467899999999999998887653  35789999999999888652    2    5667777753 1 2333   67999


Q ss_pred             EEEe-----CCChhchHHHHHhccc
Q 026506          185 IFLD-----LPQPWLAIPSAKKMLK  204 (237)
Q Consensus       185 v~~~-----~~~~~~~l~~~~~~L~  204 (237)
                      |+++     .+++..+++++.+.++
T Consensus        79 Vi~~~~l~~~~d~~~~l~e~~r~~~  103 (194)
T TIGR02081        79 VILSQTLQATRNPEEILDEMLRVGR  103 (194)
T ss_pred             EEEhhHhHcCcCHHHHHHHHHHhCC
Confidence            9864     3456667777766554

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.79  E-value=5.1e-08  Score=75.30  Aligned_cols=48  Identities=25%  Similarity=0.338  Sum_probs=43.0

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE  154 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~  154 (237)
                      ...+..+|||||-+|.+++++++.+++ ..+.++|+++..++.|++++.
T Consensus        56 ~f~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r  103 (288)
T KOG2899|consen   56 WFEPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIR  103 (288)
T ss_pred             ccCcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhcc
Confidence            455779999999999999999999865 789999999999999999864

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.77  E-value=2e-07  Score=84.92  Aligned_cols=126  Identities=21%  Similarity=0.177  Sum_probs=90.4

Q ss_pred             ccccccHHHHHHhcCC-CCCCEEEEEccCccHHHHHHHHHhC--------------------------------------
Q 026506           91 ILYIADISFVIMYLEL-VPGCLVLESGTGSGSLTTSLARAVA--------------------------------------  131 (237)
Q Consensus        91 ~~~~~~~~~~~~~~~~-~~~~~vldiG~G~G~~~~~~~~~~~--------------------------------------  131 (237)
                      .+.+..++.++...+. .++..++|.+||+|++.+..+....                                      
T Consensus       172 pl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~  251 (702)
T PRK11783        172 PLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG  251 (702)
T ss_pred             CCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence            3444445556677776 6789999999999999987765310                                      


Q ss_pred             ---CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCCh------h---ch---H
Q 026506          132 ---PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP------W---LA---I  196 (237)
Q Consensus       132 ---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~------~---~~---l  196 (237)
                         ...+++++|+++.+++.|++|+...|+.+.+++..+|+.+...+. ..+.+|+|+.|+|--      .   ++   +
T Consensus       252 ~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~l  330 (702)
T PRK11783        252 LAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL-PKGPTGLVISNPPYGERLGEEPALIALYSQL  330 (702)
T ss_pred             ccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc-ccCCCCEEEECCCCcCccCchHHHHHHHHHH
Confidence               113699999999999999999999999877999999997633221 114699999998721      1   12   2


Q ss_pred             HHHHhcccCCCEEEEEeCCHH
Q 026506          197 PSAKKMLKQDGILCSFSPCIE  217 (237)
Q Consensus       197 ~~~~~~L~~gG~l~~~~~~~~  217 (237)
                      ....+...+|+.++++++...
T Consensus       331 g~~lk~~~~g~~~~llt~~~~  351 (702)
T PRK11783        331 GRRLKQQFGGWNAALFSSSPE  351 (702)
T ss_pred             HHHHHHhCCCCeEEEEeCCHH
Confidence            233444459999998888654

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=7.3e-08  Score=76.37  Aligned_cols=87  Identities=25%  Similarity=0.315  Sum_probs=72.2

Q ss_pred             HHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC
Q 026506           98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE  177 (237)
Q Consensus        98 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  177 (237)
                      ..++..+++.+++.|||||+|.|.+|..+++..   .+|+++|+++.+++..++.+.   ...+++++.+|+....++..
T Consensus        20 ~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~l   93 (259)
T COG0030          20 DKIVEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPSL   93 (259)
T ss_pred             HHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchhh
Confidence            347888889999999999999999999999984   679999999999999998764   22349999999998666632


Q ss_pred             CCCCCCEEEEeCCCh
Q 026506          178 FSGLADSIFLDLPQP  192 (237)
Q Consensus       178 ~~~~~D~v~~~~~~~  192 (237)
                        ..++.|+.|.|-.
T Consensus        94 --~~~~~vVaNlPY~  106 (259)
T COG0030          94 --AQPYKVVANLPYN  106 (259)
T ss_pred             --cCCCEEEEcCCCc
Confidence              1689999998844

>PRK10083 putative oxidoreductase; Provisional

Probab=98.77  E-value=1.8e-07  Score=78.18  Aligned_cols=180  Identities=14%  Similarity=0.139  Sum_probs=103.2

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc----
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR----   88 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----   88 (237)
                      ..+++||+|.+.+..+        |+.|.+|..|..+.|.-.+    .......|.+. |...+....+  .++..    
T Consensus        73 ~~~~~Gd~V~~~~~~~--------~~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~--~ip~~~~~~  138 (339)
T PRK10083         73 DAARIGERVAVDPVIS--------CGHCYPCSIGKPNVCTSLV----VLGVHRDGGFSEYAVVPAKNAH--RIPDAIADQ  138 (339)
T ss_pred             ccCCCCCEEEEccccC--------CCCCccccCcCcccCCCCc----eEEEccCCcceeeEEechHHeE--ECcCCCCHH
Confidence            4689999999987666        7888888888777775221    11111123333 3333322111  11111    


Q ss_pred             -ccccccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 026506           89 -TQILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG  165 (237)
Q Consensus        89 -~~~~~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~  165 (237)
                       .....+.... .+....++.++++|+..|+|. |..+.++++...+...+++++.+++..+.+++    .|++..+...
T Consensus       139 ~a~~~~~~~~a~~~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~  214 (339)
T PRK10083        139 YAVMVEPFTIAANVTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKE----SGADWVINNA  214 (339)
T ss_pred             HHhhhchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH----hCCcEEecCc
Confidence             1111111111 133455688999999999877 66677777753233568889999998888876    4554322322


Q ss_pred             EccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          166 VRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       166 ~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ..++. ..+... +..+|+++...... ..+..+.+.|+++|+++.++.
T Consensus       215 ~~~~~-~~~~~~-g~~~d~vid~~g~~-~~~~~~~~~l~~~G~~v~~g~  260 (339)
T PRK10083        215 QEPLG-EALEEK-GIKPTLIIDAACHP-SILEEAVTLASPAARIVLMGF  260 (339)
T ss_pred             cccHH-HHHhcC-CCCCCEEEECCCCH-HHHHHHHHHhhcCCEEEEEcc
Confidence            22222 111111 12356766544433 378889999999999998753

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=98.76  E-value=1.1e-07  Score=81.05  Aligned_cols=187  Identities=18%  Similarity=0.225  Sum_probs=106.3

Q ss_pred             CCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCC------CCce----------EEeccCcEE-EEEC
Q 026506           13 TRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKP------FGSM----------VFSNKGGFV-YLLA   75 (237)
Q Consensus        13 ~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~g~~----------~~~~~~~~~-~~~~   75 (237)
                      ...+++||+|......+        ||.|.+|+.|..+.|+.....      +|..          .....|.+. +...
T Consensus        73 v~~~~~Gd~V~~~~~~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v  144 (386)
T cd08283          73 VRNLKVGDRVVVPFTIA--------CGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYSHLTGGYAGGQAEYVRV  144 (386)
T ss_pred             CCCCCCCCEEEEcCcCC--------CCCChhhcCCCcccCCCcccccccccccccccccccccccccCCCCCeeEEEEEc
Confidence            44689999999987666        888999988877776532110      0000          000123333 2232


Q ss_pred             CCHHHHhhhcCCc-----cc-ccccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHH
Q 026506           76 PTPELWTLVLSHR-----TQ-ILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAA  147 (237)
Q Consensus        76 ~~~~~~~~~~~~~-----~~-~~~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~  147 (237)
                      +........++..     +. +......+ ..+....+.++.+||+.|+|+ |..+..+++..+ ..++++++.++++.+
T Consensus       145 ~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~  223 (386)
T cd08283         145 PFADVGPFKIPDDLSDEKALFLSDILPTGYHAAELAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLE  223 (386)
T ss_pred             ccccCeEEECCCCCCHHHHhhhccchhhhHHHHhhccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHH
Confidence            2211011111111     01 11111111 123456678899999999988 888888888863 346999999999999


Q ss_pred             HHHHHHHHcCCCCcEEEEEcc-ccC--CCCCCCCCCCCCEEEEeCC--------------------ChhchHHHHHhccc
Q 026506          148 SAREDFERTGVSSFVTVGVRD-IQG--QGFPDEFSGLADSIFLDLP--------------------QPWLAIPSAKKMLK  204 (237)
Q Consensus       148 ~a~~~~~~~~~~~~i~~~~~d-~~~--~~~~~~~~~~~D~v~~~~~--------------------~~~~~l~~~~~~L~  204 (237)
                      .+++..   +. ..+.....+ +.+  ..+..  +..+|+|+....                    ++...+..+.+.|+
T Consensus       224 ~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~--~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  297 (386)
T cd08283         224 MARSHL---GA-ETINFEEVDDVVEALRELTG--GRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVR  297 (386)
T ss_pred             HHHHcC---Cc-EEEcCCcchHHHHHHHHHcC--CCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhc
Confidence            888742   22 112222221 211  01111  136999776442                    12347888999999


Q ss_pred             CCCEEEEEeC
Q 026506          205 QDGILCSFSP  214 (237)
Q Consensus       205 ~gG~l~~~~~  214 (237)
                      ++|+++.++.
T Consensus       298 ~~G~iv~~g~  307 (386)
T cd08283         298 KGGTVSIIGV  307 (386)
T ss_pred             cCCEEEEEcC
Confidence            9999998753

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.76  E-value=1.3e-07  Score=71.70  Aligned_cols=98  Identities=23%  Similarity=0.190  Sum_probs=79.8

Q ss_pred             EEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCC
Q 026506          111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP  190 (237)
Q Consensus       111 ~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~  190 (237)
                      +++|+|+|.|.-++.++-.. |..+++.+|.+...+.+.+......+++| +++....+.+ ....   ..||+|+.-+-
T Consensus        51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~-~~~~---~~fd~v~aRAv  124 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSN-VEVINGRAEE-PEYR---ESFDVVTARAV  124 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEES-HHH-TTTT---T-EEEEEEESS
T ss_pred             eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEEeeecc-cccC---CCccEEEeehh
Confidence            89999999999888888775 67899999999999999999999999987 9999998875 2222   78999998765


Q ss_pred             Ch-hchHHHHHhcccCCCEEEEEeC
Q 026506          191 QP-WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       191 ~~-~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .+ ..+++-+.+.+++||+++++-.
T Consensus       125 ~~l~~l~~~~~~~l~~~G~~l~~KG  149 (184)
T PF02527_consen  125 APLDKLLELARPLLKPGGRLLAYKG  149 (184)
T ss_dssp             SSHHHHHHHHGGGEEEEEEEEEEES
T ss_pred             cCHHHHHHHHHHhcCCCCEEEEEcC
Confidence            43 4578888999999999998864

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=98.75  E-value=8e-08  Score=80.71  Aligned_cols=183  Identities=20%  Similarity=0.240  Sum_probs=104.0

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhh--hcC-Ccc
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTL--VLS-HRT   89 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~--~~~-~~~   89 (237)
                      ..+++||+|......+        |+.|.+|+.|....|...+. .|.  ....|.+. |...+....+..  .++ ...
T Consensus        84 ~~~~~Gd~V~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~--~~~~g~~a~~~~~~~~~~~~lP~~~~~~~a  152 (351)
T cd08233          84 TGFKVGDRVVVEPTIK--------CGTCGACKRGLYNLCDSLGF-IGL--GGGGGGFAEYVVVPAYHVHKLPDNVPLEEA  152 (351)
T ss_pred             CCCCCCCEEEECCCCC--------CCCChHHhCcCcccCCCCce-ecc--CCCCCceeeEEEechHHeEECcCCCCHHHh
Confidence            4689999999977556        88888888887666653221 010  00023333 333332111100  001 011


Q ss_pred             cccccccHHH-HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q 026506           90 QILYIADISF-VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR  167 (237)
Q Consensus        90 ~~~~~~~~~~-~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~  167 (237)
                      ..+.+...+. .+......++++||..|+|. |..+.++++..+ ..++++++.+++..+.+++    .|.+..+.....
T Consensus       153 a~~~~~~ta~~~l~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G-~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~  227 (351)
T cd08233         153 ALVEPLAVAWHAVRRSGFKPGDTALVLGAGPIGLLTILALKAAG-ASKIIVSEPSEARRELAEE----LGATIVLDPTEV  227 (351)
T ss_pred             hhccHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----hCCCEEECCCcc
Confidence            1111211121 33556778899999999876 777778888763 2378999999998888765    354332222222


Q ss_pred             cccCCCCCC-CCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          168 DIQGQGFPD-EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       168 d~~~~~~~~-~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ++.+ .+.. ..+.++|+++...... ..++.+.+.|+++|+++.++.
T Consensus       228 ~~~~-~l~~~~~~~~~d~vid~~g~~-~~~~~~~~~l~~~G~~v~~g~  273 (351)
T cd08233         228 DVVA-EVRKLTGGGGVDVSFDCAGVQ-ATLDTAIDALRPRGTAVNVAI  273 (351)
T ss_pred             CHHH-HHHHHhCCCCCCEEEECCCCH-HHHHHHHHhccCCCEEEEEcc
Confidence            2221 1111 1113599977655433 378889999999999987754

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=98.73  E-value=1.2e-07  Score=79.56  Aligned_cols=183  Identities=20%  Similarity=0.186  Sum_probs=103.9

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccc--cCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc--
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWI--GKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR--   88 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--   88 (237)
                      ..+++||+|...+..+        |+.|..|..|..+.|...  +...+.   ...|.+. |...|....+...++..  
T Consensus        73 ~~~~~Gd~V~~~~~~~--------~~~c~~c~~g~~~~~~~~~~~~~~~~---~~~g~~~~y~~v~~~~~~~~~lP~~~~  141 (351)
T cd08285          73 KDFKPGDRVIVPAITP--------DWRSVAAQRGYPSQSGGMLGGWKFSN---FKDGVFAEYFHVNDADANLAPLPDGLT  141 (351)
T ss_pred             CccCCCCEEEEcCcCC--------CCCCHHHHCcCcccCcCCCCCccccC---CCCcceeEEEEcchhhCceEECCCCCC
Confidence            4589999999876555        888888888877666521  111110   1123333 33333211111111111  


Q ss_pred             ---cccc-ccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcE
Q 026506           89 ---TQIL-YIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFV  162 (237)
Q Consensus        89 ---~~~~-~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i  162 (237)
                         ...+ .+...+ ..+.....+++++||..|+|+ |..+.++++..+ ...+++++.+++..+.+++    .|.+..+
T Consensus       142 ~~~aa~~~~~~~ta~~~~~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v  216 (351)
T cd08285         142 DEQAVMLPDMMSTGFHGAELANIKLGDTVAVFGIGPVGLMAVAGARLRG-AGRIIAVGSRPNRVELAKE----YGATDIV  216 (351)
T ss_pred             HHHhhhhccchhhHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCceEe
Confidence               1111 111111 123455678899999999887 777788888763 3479999999988888776    4543322


Q ss_pred             EEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          163 TVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       163 ~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +....+..+.......+.++|+++...... ..+..+.+.|+++|+++.++
T Consensus       217 ~~~~~~~~~~i~~~~~~~~~d~vld~~g~~-~~~~~~~~~l~~~G~~v~~g  266 (351)
T cd08285         217 DYKNGDVVEQILKLTGGKGVDAVIIAGGGQ-DTFEQALKVLKPGGTISNVN  266 (351)
T ss_pred             cCCCCCHHHHHHHHhCCCCCcEEEECCCCH-HHHHHHHHHhhcCCEEEEec
Confidence            222222211000001114699977655433 47889999999999998765

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.73  E-value=4.5e-07  Score=73.85  Aligned_cols=88  Identities=18%  Similarity=0.239  Sum_probs=69.2

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC--CCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPD  176 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~  176 (237)
                      .+++.+.+.++..++|.-+|.|+.+..++..++. ++|+++|.++.+++.+++++..+  .+++.++++++.+.  .+..
T Consensus        11 Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~   87 (305)
T TIGR00006        11 EVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDE   87 (305)
T ss_pred             HHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHh
Confidence            3677788889999999999999999999998754 89999999999999999988654  35689999888751  1111


Q ss_pred             CCCCCCCEEEEeC
Q 026506          177 EFSGLADSIFLDL  189 (237)
Q Consensus       177 ~~~~~~D~v~~~~  189 (237)
                      .....+|.|+.|.
T Consensus        88 ~~~~~vDgIl~DL  100 (305)
T TIGR00006        88 LLVTKIDGILVDL  100 (305)
T ss_pred             cCCCcccEEEEec
Confidence            1114689998764

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.72  E-value=1.1e-08  Score=77.82  Aligned_cols=124  Identities=18%  Similarity=0.194  Sum_probs=75.2

Q ss_pred             HHHhcC-CCC--CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC----
Q 026506          100 VIMYLE-LVP--GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ----  172 (237)
Q Consensus       100 ~~~~~~-~~~--~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----  172 (237)
                      +.+..+ +.+  +.++||+||+||+++..++.+.++..+|+++|+.+.           ....+ +....+|+.+.    
T Consensus        12 i~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~-~~~i~~d~~~~~~~~   79 (181)
T PF01728_consen   12 IDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQN-VSFIQGDITNPENIK   79 (181)
T ss_dssp             HHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TT-EEBTTGGGEEEEHSH
T ss_pred             HHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccc-eeeeecccchhhHHH
Confidence            344444 344  489999999999999998888645689999999765           11112 44445554330    


Q ss_pred             CCCCC---CCCCCCEEEEeCCCh----------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHhcCccc
Q 026506          173 GFPDE---FSGLADSIFLDLPQP----------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGK  233 (237)
Q Consensus       173 ~~~~~---~~~~~D~v~~~~~~~----------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~v  233 (237)
                      .+...   ....+|+|++|....                ...+.-+.+.|+|||.+++-.-......+++..++..|..+
T Consensus        80 ~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v  159 (181)
T PF01728_consen   80 DIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKV  159 (181)
T ss_dssp             HGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHE
T ss_pred             hhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEE
Confidence            01111   125799999987211                12455667889999987755433333347777777777766


Q ss_pred             cc
Q 026506          234 ES  235 (237)
Q Consensus       234 ~~  235 (237)
                      ++
T Consensus       160 ~~  161 (181)
T PF01728_consen  160 KI  161 (181)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.72  E-value=1.1e-07  Score=76.50  Aligned_cols=183  Identities=22%  Similarity=0.193  Sum_probs=102.8

Q ss_pred             ccCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccc--cc---cC-CCCceEEeccCcEE-EEECCCHHHHhh
Q 026506           11 SFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSD--WI---GK-PFGSMVFSNKGGFV-YLLAPTPELWTL   83 (237)
Q Consensus        11 ~~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~---~~-~~g~~~~~~~~~~~-~~~~~~~~~~~~   83 (237)
                      +-...||.||||-|-...+       .|.+|-.|..|.=+.|.  .+   +. ..|.   ..+|+|. |.......  ..
T Consensus        82 s~V~~~kiGD~vGVg~~~~-------sC~~CE~C~~~~E~yCpk~~~t~~g~~~DGt---~~~ggf~~~~~v~~~~--a~  149 (360)
T KOG0023|consen   82 SNVTGFKIGDRVGVGWLNG-------SCLSCEYCKSGNENYCPKMHFTYNGVYHDGT---ITQGGFQEYAVVDEVF--AI  149 (360)
T ss_pred             CCcccccccCeeeeeEEec-------cccCccccccCCcccCCceeEeccccccCCC---CccCccceeEEEeeee--EE
Confidence            4478899999999965433       36666666666555554  11   11 1111   1234444 22221111  11


Q ss_pred             hcCC-----cccccccccHH--HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q 026506           84 VLSH-----RTQILYIADIS--FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER  155 (237)
Q Consensus        84 ~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~  155 (237)
                      ..+.     .++.+.-..+.  ..+.+.+..||.++-..|.|. |.++..++.++  ..+|+++|.+...-+.+-+   .
T Consensus       150 kIP~~~pl~~aAPlLCaGITvYspLk~~g~~pG~~vgI~GlGGLGh~aVq~AKAM--G~rV~vis~~~~kkeea~~---~  224 (360)
T KOG0023|consen  150 KIPENLPLASAAPLLCAGITVYSPLKRSGLGPGKWVGIVGLGGLGHMAVQYAKAM--GMRVTVISTSSKKKEEAIK---S  224 (360)
T ss_pred             ECCCCCChhhccchhhcceEEeehhHHcCCCCCcEEEEecCcccchHHHHHHHHh--CcEEEEEeCCchhHHHHHH---h
Confidence            1111     11111100000  145677788999999999988 99999999998  3789999998755554433   3


Q ss_pred             cCCCCcEEEE-EccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          156 TGVSSFVTVG-VRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       156 ~~~~~~i~~~-~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +|.+.-+... ..|..+ .+...+.+..|.+. +.  ....++.+.++||++|++++++.
T Consensus       225 LGAd~fv~~~~d~d~~~-~~~~~~dg~~~~v~-~~--a~~~~~~~~~~lk~~Gt~V~vg~  280 (360)
T KOG0023|consen  225 LGADVFVDSTEDPDIMK-AIMKTTDGGIDTVS-NL--AEHALEPLLGLLKVNGTLVLVGL  280 (360)
T ss_pred             cCcceeEEecCCHHHHH-HHHHhhcCcceeee-ec--cccchHHHHHHhhcCCEEEEEeC
Confidence            6766534433 333332 12211224455533 22  22368889999999999997753

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.69  E-value=2.1e-08  Score=71.29  Aligned_cols=79  Identities=19%  Similarity=0.279  Sum_probs=63.5

Q ss_pred             CCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       105 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      +--.|..++|+|||.|.+..+.+..  ....+.++|++|++++.+.+|++...+.  +++.+.|+.+..+..   +.||.
T Consensus        45 gdiEgkkl~DLgcgcGmLs~a~sm~--~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~~---g~fDt  117 (185)
T KOG3420|consen   45 GDIEGKKLKDLGCGCGMLSIAFSMP--KNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELKG---GIFDT  117 (185)
T ss_pred             ccccCcchhhhcCchhhhHHHhhcC--CCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhccC---CeEee
Confidence            4456899999999999999554433  4578999999999999999999877653  688888887644433   78999


Q ss_pred             EEEeCC
Q 026506          185 IFLDLP  190 (237)
Q Consensus       185 v~~~~~  190 (237)
                      ++.|+|
T Consensus       118 aviNpp  123 (185)
T KOG3420|consen  118 AVINPP  123 (185)
T ss_pred             EEecCC
Confidence            999987

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=98.68  E-value=2.6e-07  Score=78.39  Aligned_cols=177  Identities=20%  Similarity=0.204  Sum_probs=100.7

Q ss_pred             CCCCCCCCEEEEEEcC-CcEEEEEEcCCCeeeeccceeeccccccCC------CCceEEeccCcEE-EEECCCHHHHhhh
Q 026506           13 TRCIKEGDLVIVYERH-DCMKAVKVCQNSAFQNRFGAFKHSDWIGKP------FGSMVFSNKGGFV-YLLAPTPELWTLV   84 (237)
Q Consensus        13 ~~~~~~Gd~V~i~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~g~~~~~~~~~~~-~~~~~~~~~~~~~   84 (237)
                      ...|++||||.+.... +        ||.|..|+.|..+.|+.....      .|.   ...|++. |...|....  ..
T Consensus        79 v~~~~vGdrV~~~~~~~~--------cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~---~~~G~~aey~~v~~~~~--~~  145 (375)
T PLN02178         79 VTKFKEGDRVGVGVIIGS--------CQSCESCNQDLENYCPKVVFTYNSRSSDGT---RNQGGYSDVIVVDHRFV--LS  145 (375)
T ss_pred             CCccCCCCEEEEcCccCC--------CCCChhHhCcchhcCCCccccccccccCCC---cCCCccccEEEEchHHe--EE
Confidence            3468999999875432 3        889999999988888642110      011   1134444 444443221  11


Q ss_pred             cCCc-----ccccccccH-HH-HHHhcC--CCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHH-HHHHHHHH
Q 026506           85 LSHR-----TQILYIADI-SF-VIMYLE--LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQR-AASAREDF  153 (237)
Q Consensus        85 ~~~~-----~~~~~~~~~-~~-~~~~~~--~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~-~~~a~~~~  153 (237)
                      ++..     +..+..... .. .+....  .+++++|+..|+|+ |..+.++++..+  .++++++.+++. .+.+++  
T Consensus       146 lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~G--a~Vi~~~~~~~~~~~~a~~--  221 (375)
T PLN02178        146 IPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFG--LRVTVISRSSEKEREAIDR--  221 (375)
T ss_pred             CCCCCCHHHcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcC--CeEEEEeCChHHhHHHHHh--
Confidence            1211     111111111 11 222232  35799999999988 788888888864  468888877543 455543  


Q ss_pred             HHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          154 ERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       154 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                        .|.+..+...  +..  .+.... +.+|+++.....+ ..+..+.+.++++|+++.++.
T Consensus       222 --lGa~~~i~~~--~~~--~v~~~~-~~~D~vid~~G~~-~~~~~~~~~l~~~G~iv~vG~  274 (375)
T PLN02178        222 --LGADSFLVTT--DSQ--KMKEAV-GTMDFIIDTVSAE-HALLPLFSLLKVSGKLVALGL  274 (375)
T ss_pred             --CCCcEEEcCc--CHH--HHHHhh-CCCcEEEECCCcH-HHHHHHHHhhcCCCEEEEEcc
Confidence              5654322211  100  111111 3589977655443 368889999999999997763

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=98.68  E-value=2.4e-07  Score=78.91  Aligned_cols=183  Identities=20%  Similarity=0.261  Sum_probs=102.5

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhh--------
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLV--------   84 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~--------   84 (237)
                      ..|++||||+..+..+        |+.|..|..|...+|.... ..|   ....|.+. +...+....+...        
T Consensus       107 ~~~~~Gd~V~~~~~~~--------~~~~~~c~~~~~~~~~~~~-~~g---~~~~g~~~~~v~v~~~~~~~lP~~~~~~~~  174 (384)
T cd08265         107 KNFEKGDPVTAEEMMW--------CGMCRACRSGSPNHCKNLK-ELG---FSADGAFAEYIAVNARYAWEINELREIYSE  174 (384)
T ss_pred             CCCCCCCEEEECCCCC--------CCCChhhhCcCcccCCCcc-eee---ecCCCcceeeEEechHHeEECCcccccccc
Confidence            3588999999987667        8888888888766665211 011   11123333 3333321111100        


Q ss_pred             -cC-CcccccccccHHH-HH-Hh-cCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q 026506           85 -LS-HRTQILYIADISF-VI-MY-LELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV  158 (237)
Q Consensus        85 -~~-~~~~~~~~~~~~~-~~-~~-~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~  158 (237)
                       .. ..+....+...+. .+ .. .+++++++||..|+|. |..++++++..+ ..++++++.+++..+.+++    .|+
T Consensus       175 ~~~~~~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G-~~~vi~~~~~~~~~~~~~~----~g~  249 (384)
T cd08265         175 DKAFEAGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAG-ASKVIAFEISEERRNLAKE----MGA  249 (384)
T ss_pred             CCCHHHhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCC
Confidence             00 0111111211111 22 22 4678899999999887 777777787763 3479999988887776666    455


Q ss_pred             CCcEEEEEc---cccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          159 SSFVTVGVR---DIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       159 ~~~i~~~~~---d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +..+.....   +..........+..+|+|+.....+...+..+.+.|+++|+++.++
T Consensus       250 ~~~v~~~~~~~~~~~~~v~~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~~g  307 (384)
T cd08265         250 DYVFNPTKMRDCLSGEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAINGKIVYIG  307 (384)
T ss_pred             CEEEcccccccccHHHHHHHhcCCCCCCEEEECCCCcHHHHHHHHHHHHcCCEEEEEC
Confidence            332222211   1111000011124699987554443457888999999999999775

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.67  E-value=1.8e-07  Score=77.49  Aligned_cols=109  Identities=19%  Similarity=0.268  Sum_probs=72.4

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC---------CCCcEEEEEccccCC----CC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG---------VSSFVTVGVRDIQGQ----GF  174 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---------~~~~i~~~~~d~~~~----~~  174 (237)
                      ++.+|||+|||-|+.+.-+...  .-..++++|++...++.|+++.....         ..-...+...|....    .+
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~  139 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL  139 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred             CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence            7899999999998877666554  34799999999999999999883211         011245677776642    12


Q ss_pred             CCCCCCCCCEEEEeCC---------ChhchHHHHHhcccCCCEEEEEeCCHHHH
Q 026506          175 PDEFSGLADSIFLDLP---------QPWLAIPSAKKMLKQDGILCSFSPCIEQV  219 (237)
Q Consensus       175 ~~~~~~~~D~v~~~~~---------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~  219 (237)
                      +. ....||+|-+-..         .....|.++...|+|||+++...|..+.+
T Consensus       140 ~~-~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i  192 (331)
T PF03291_consen  140 PP-RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEI  192 (331)
T ss_dssp             SS-TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred             cc-cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence            22 1248999865322         11247999999999999999888866554

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.66  E-value=5.5e-08  Score=73.97  Aligned_cols=114  Identities=24%  Similarity=0.291  Sum_probs=71.7

Q ss_pred             HHHHHHhcCCCC-CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCC
Q 026506           97 ISFVIMYLELVP-GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP  175 (237)
Q Consensus        97 ~~~~~~~~~~~~-~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  175 (237)
                      +..+++++.-.| ...|.|+|||.+.++..+.    ...+|+.+|+-..              ..  .+...|+...+++
T Consensus        60 vd~iI~~l~~~~~~~viaD~GCGdA~la~~~~----~~~~V~SfDLva~--------------n~--~Vtacdia~vPL~  119 (219)
T PF05148_consen   60 VDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP----NKHKVHSFDLVAP--------------NP--RVTACDIANVPLE  119 (219)
T ss_dssp             HHHHHHHHCTS-TTS-EEEES-TT-HHHHH------S---EEEEESS-S--------------ST--TEEES-TTS-S--
T ss_pred             HHHHHHHHHhcCCCEEEEECCCchHHHHHhcc----cCceEEEeeccCC--------------CC--CEEEecCccCcCC
Confidence            344677776444 5699999999998884432    2357999998431              12  3566888776676


Q ss_pred             CCCCCCCCEEEEeCC----ChhchHHHHHhcccCCCEEEEEeCCH--HHHHHHHHHHHh-cCccc
Q 026506          176 DEFSGLADSIFLDLP----QPWLAIPSAKKMLKQDGILCSFSPCI--EQVQRSCESLRL-NFTGK  233 (237)
Q Consensus       176 ~~~~~~~D~v~~~~~----~~~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~l~~-~f~~v  233 (237)
                      .   +.+|+++.+..    +...++.++.|.|||||.|.+.....  ...+.+.+.+.. ||...
T Consensus       120 ~---~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~  181 (219)
T PF05148_consen  120 D---ESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLK  181 (219)
T ss_dssp             T---T-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEE
T ss_pred             C---CceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEE
Confidence            6   78999987643    44579999999999999999876443  457888888888 88643

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=98.66  E-value=6e-07  Score=69.37  Aligned_cols=105  Identities=25%  Similarity=0.395  Sum_probs=80.9

Q ss_pred             HHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHH----HHHHHHHHHHcCCCCcEEEEEccccCCCCCC
Q 026506          101 IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQR----AASAREDFERTGVSSFVTVGVRDIQGQGFPD  176 (237)
Q Consensus       101 ~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~----~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  176 (237)
                      ++.++++||.+||-+|+++|....+++.-.++...|+++|.++..    +.+|+++      .| |-.+..|+.......
T Consensus       149 vdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR------tN-iiPIiEDArhP~KYR  221 (317)
T KOG1596|consen  149 VDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR------TN-IIPIIEDARHPAKYR  221 (317)
T ss_pred             ccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc------CC-ceeeeccCCCchhee
Confidence            356678999999999999999999999999999999999998653    4444432      24 777888987532223


Q ss_pred             CCCCCCCEEEEeCCChhc---hHHHHHhcccCCCEEEEE
Q 026506          177 EFSGLADSIFLDLPQPWL---AIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       177 ~~~~~~D~v~~~~~~~~~---~l~~~~~~L~~gG~l~~~  212 (237)
                      ..-+-+|+||.|.+.+.+   +.-++...||+||-++++
T Consensus       222 mlVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvis  260 (317)
T KOG1596|consen  222 MLVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVIS  260 (317)
T ss_pred             eeeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEE
Confidence            333578999999887753   456678899999988865

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.65  E-value=1.1e-07  Score=73.33  Aligned_cols=123  Identities=20%  Similarity=0.172  Sum_probs=74.0

Q ss_pred             cccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-------HcCC-CCcEE
Q 026506           92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE-------RTGV-SSFVT  163 (237)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~-------~~~~-~~~i~  163 (237)
                      +.+.....+++.+++.+++..+|+|||.|....+.+... +..+.+|+|+.+...+.|+....       ..+. ...++
T Consensus        26 i~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~  104 (205)
T PF08123_consen   26 ISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVE  104 (205)
T ss_dssp             CHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEE
T ss_pred             cCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccce
Confidence            334445567788899999999999999999998888775 44679999999998887765332       2333 23477


Q ss_pred             EEEccccCCCCCCCCCCCCCEEEEeCCC----hhchHHHHHhcccCCCEEEEEeCC
Q 026506          164 VGVRDIQGQGFPDEFSGLADSIFLDLPQ----PWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       164 ~~~~d~~~~~~~~~~~~~~D~v~~~~~~----~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      +..+|+.+..+....-...|+||+|.-.    ....+.+....||+|.+++...+.
T Consensus       105 l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~~~  160 (205)
T PF08123_consen  105 LIHGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTKPF  160 (205)
T ss_dssp             EECS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS-S
T ss_pred             eeccCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECCCc
Confidence            8888887522211111358999987542    234567777889999998854443

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.64  E-value=8.7e-07  Score=73.64  Aligned_cols=122  Identities=15%  Similarity=0.163  Sum_probs=91.0

Q ss_pred             cccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhC---C----------------------------Cc----
Q 026506           90 QILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVA---P----------------------------TG----  134 (237)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~---~----------------------------~~----  134 (237)
                      +.+-...++.++.+.+..++..++|--||+|++.+..|....   |                            ..    
T Consensus       173 ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~  252 (381)
T COG0116         173 APLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGK  252 (381)
T ss_pred             CCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcC
Confidence            334444444577888999999999999999999988765531   0                            01    


Q ss_pred             ---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCC------h-------hchHHH
Q 026506          135 ---HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQ------P-------WLAIPS  198 (237)
Q Consensus       135 ---~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~------~-------~~~l~~  198 (237)
                         .++++|+++.+++.|+.|+...|+.+.|++.+.|+..  +.... ..+|+|+.|+|-      .       .++.+.
T Consensus       253 ~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~--l~~~~-~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~  329 (381)
T COG0116         253 ELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATD--LKEPL-EEYGVVISNPPYGERLGSEALVAKLYREFGRT  329 (381)
T ss_pred             ccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhh--CCCCC-CcCCEEEeCCCcchhcCChhhHHHHHHHHHHH
Confidence               3789999999999999999999999989999999975  33311 579999999871      1       123345


Q ss_pred             HHhcccCCCEEEEEeC
Q 026506          199 AKKMLKQDGILCSFSP  214 (237)
Q Consensus       199 ~~~~L~~gG~l~~~~~  214 (237)
                      +.+.++..++.++.++
T Consensus       330 lk~~~~~ws~~v~tt~  345 (381)
T COG0116         330 LKRLLAGWSRYVFTTS  345 (381)
T ss_pred             HHHHhcCCceEEEEcc
Confidence            5577777777776665

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.63  E-value=3.7e-07  Score=71.81  Aligned_cols=88  Identities=23%  Similarity=0.226  Sum_probs=65.8

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL  187 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~  187 (237)
                      ...++||||+|-|..+..++...   .+|++.|.|+.|....++    .|.    ++...|-    +.. .+.+||+|.+
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~----kg~----~vl~~~~----w~~-~~~~fDvIsc  157 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSK----KGF----TVLDIDD----WQQ-TDFKFDVISC  157 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHh----CCC----eEEehhh----hhc-cCCceEEEee
Confidence            45689999999999999999886   679999999999776665    353    3332221    211 1257999864


Q ss_pred             -e----CCChhchHHHHHhcccCCCEEEE
Q 026506          188 -D----LPQPWLAIPSAKKMLKQDGILCS  211 (237)
Q Consensus       188 -~----~~~~~~~l~~~~~~L~~gG~l~~  211 (237)
                       |    ...|..+|+.+++.|+|+|++++
T Consensus       158 LNvLDRc~~P~~LL~~i~~~l~p~G~lil  186 (265)
T PF05219_consen  158 LNVLDRCDRPLTLLRDIRRALKPNGRLIL  186 (265)
T ss_pred             hhhhhccCCHHHHHHHHHHHhCCCCEEEE
Confidence             2    35677899999999999999873

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.62  E-value=2e-07  Score=69.56  Aligned_cols=74  Identities=15%  Similarity=0.132  Sum_probs=57.8

Q ss_pred             EEEeCCHHHHHHHHHHHHHcC--CCCcEEEEEccccCCCCCCCCCCCCCEEEE-----eCCChhchHHHHHhcccCCCEE
Q 026506          137 YTFDFHEQRAASAREDFERTG--VSSFVTVGVRDIQGQGFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGIL  209 (237)
Q Consensus       137 ~~vD~~~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l  209 (237)
                      +++|+|++|++.|+++.....  ..+++++..+|+.+.+++.   +.||+|++     +.+++..+++++.+.|||||.+
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~---~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l   77 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDD---CEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRV   77 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCC---CCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEE
Confidence            379999999999987754322  1234899999998755554   68999975     3456778999999999999999


Q ss_pred             EEEe
Q 026506          210 CSFS  213 (237)
Q Consensus       210 ~~~~  213 (237)
                      ++..
T Consensus        78 ~i~d   81 (160)
T PLN02232         78 SILD   81 (160)
T ss_pred             EEEE
Confidence            8664

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=98.62  E-value=5.8e-07  Score=76.26  Aligned_cols=186  Identities=15%  Similarity=0.108  Sum_probs=100.6

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCC--C-------------CceE--EeccCcEE-EEEC
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKP--F-------------GSMV--FSNKGGFV-YLLA   75 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~-------------g~~~--~~~~~~~~-~~~~   75 (237)
                      ..+++||||......+        ||+|.+|+.|..+.|......  .             |...  ....|++. |...
T Consensus        80 ~~~~~Gd~V~~~~~~~--------c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~e~~~v  151 (373)
T cd08299          80 TTVKPGDKVIPLFVPQ--------CGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFTCKGKPIHHFLGTSTFSEYTVV  151 (373)
T ss_pred             ccCCCCCEEEECCCCC--------CCCChhhhCCCcccCcCcccccccccccCCccccccCCcccccccCCCcccceEEe
Confidence            3589999999876666        889999998887777632110  0             0000  00123333 2333


Q ss_pred             CCHHHHhh--hcCC-cccccc-cccHHH--HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 026506           76 PTPELWTL--VLSH-RTQILY-IADISF--VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAAS  148 (237)
Q Consensus        76 ~~~~~~~~--~~~~-~~~~~~-~~~~~~--~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~  148 (237)
                      |....+..  .++. ....+. +...++  +....+++++++||.+|+|. |..+..+++..+ ..+|++++.+++..+.
T Consensus       152 ~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~~~  230 (373)
T cd08299         152 DEIAVAKIDAAAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAG-ASRIIAVDINKDKFAK  230 (373)
T ss_pred             cccceeeCCCCCChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHH
Confidence            32211110  0110 111111 111111  23456788899999998877 666777777753 2479999999988888


Q ss_pred             HHHHHHHcCCCCcEEEEEcc--ccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhc-ccCCCEEEEEeC
Q 026506          149 AREDFERTGVSSFVTVGVRD--IQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKM-LKQDGILCSFSP  214 (237)
Q Consensus       149 a~~~~~~~~~~~~i~~~~~d--~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~-L~~gG~l~~~~~  214 (237)
                      +++    .|++..+.....+  ... .+.....+.+|+++-....+ ..+..+... ++++|+++.++.
T Consensus       231 a~~----lGa~~~i~~~~~~~~~~~-~v~~~~~~~~d~vld~~g~~-~~~~~~~~~~~~~~G~~v~~g~  293 (373)
T cd08299         231 AKE----LGATECINPQDYKKPIQE-VLTEMTDGGVDFSFEVIGRL-DTMKAALASCHEGYGVSVIVGV  293 (373)
T ss_pred             HHH----cCCceEecccccchhHHH-HHHHHhCCCCeEEEECCCCc-HHHHHHHHhhccCCCEEEEEcc
Confidence            855    4654323322111  111 01111114699876544433 356665554 467999987763

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.61  E-value=7.3e-08  Score=71.63  Aligned_cols=93  Identities=24%  Similarity=0.272  Sum_probs=76.4

Q ss_pred             CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506          109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD  188 (237)
Q Consensus       109 ~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~  188 (237)
                      .+.+.|+|+|+|-++...+..   +.+|+++|.+|...+.|++|+...|..+ ++++.+|+.+..+.     ..|+|++.
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n-~evv~gDA~~y~fe-----~ADvvicE  103 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVN-WEVVVGDARDYDFE-----NADVVICE  103 (252)
T ss_pred             hhceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcc-eEEEeccccccccc-----ccceeHHH
Confidence            379999999999999877776   3789999999999999999987677666 99999999875553     47998765


Q ss_pred             CCC-------hhchHHHHHhcccCCCEEE
Q 026506          189 LPQ-------PWLAIPSAKKMLKQDGILC  210 (237)
Q Consensus       189 ~~~-------~~~~l~~~~~~L~~gG~l~  210 (237)
                      +-+       ....+..+++.|+..+.++
T Consensus       104 mlDTaLi~E~qVpV~n~vleFLr~d~tii  132 (252)
T COG4076         104 MLDTALIEEKQVPVINAVLEFLRYDPTII  132 (252)
T ss_pred             HhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence            432       2357888999999999887

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.60  E-value=7.5e-08  Score=74.40  Aligned_cols=99  Identities=24%  Similarity=0.269  Sum_probs=69.5

Q ss_pred             EEEEEccCccHHHHHHHHHhCCC--cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCC-CCCCCCCCEEEE
Q 026506          111 LVLESGTGSGSLTTSLARAVAPT--GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP-DEFSGLADSIFL  187 (237)
Q Consensus       111 ~vldiG~G~G~~~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~~~D~v~~  187 (237)
                      +|||+|||.|.....+++-. ++  -.++++|.+|.+++..+++.....  .+......|+....+. ....+.+|.|.+
T Consensus        74 ~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~  150 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITL  150 (264)
T ss_pred             hheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEE
Confidence            89999999999998888764 33  689999999999999988653221  3344455555442211 112378898742


Q ss_pred             ----eC---CChhchHHHHHhcccCCCEEEEE
Q 026506          188 ----DL---PQPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       188 ----~~---~~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                          .+   .....+++++.++|||||.|++=
T Consensus       151 IFvLSAi~pek~~~a~~nl~~llKPGG~llfr  182 (264)
T KOG2361|consen  151 IFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFR  182 (264)
T ss_pred             EEEEeccChHHHHHHHHHHHHHhCCCcEEEEe
Confidence                22   23346899999999999999843

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=98.60  E-value=4.7e-07  Score=67.32  Aligned_cols=115  Identities=21%  Similarity=0.245  Sum_probs=79.5

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cccC--------CCCCC
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQG--------QGFPD  176 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~--------~~~~~  176 (237)
                      ++|+++|||+||.+|.++....+..+|.+.|.++|+-+-           ..... ..++.+ |+.+        +.++.
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~G-a~~i~~~dvtdp~~~~ki~e~lp~  134 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEG-ATIIQGNDVTDPETYRKIFEALPN  134 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCC-cccccccccCCHHHHHHHHHhCCC
Confidence            578999999999999999888888888999999998321           11112 233333 5543        12222


Q ss_pred             CCCCCCCEEEEeCCCh---------h-------chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHhcCccccc
Q 026506          177 EFSGLADSIFLDLPQP---------W-------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGKES  235 (237)
Q Consensus       177 ~~~~~~D~v~~~~~~~---------~-------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~v~~  235 (237)
                         ..+|+|+.|+...         .       +++.-+...++|+|.++.-.-..++..++...|.+.|++|+.
T Consensus       135 ---r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~Vk~  206 (232)
T KOG4589|consen  135 ---RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTNVKK  206 (232)
T ss_pred             ---CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhhcEe
Confidence               6799999886422         1       234455677889999886555556677777888878887764

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=98.59  E-value=8.1e-07  Score=74.92  Aligned_cols=183  Identities=16%  Similarity=0.144  Sum_probs=100.7

Q ss_pred             CCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceE----EeccCcEE-EEECCCHHHHhhhcCCc--
Q 026506           16 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMV----FSNKGGFV-YLLAPTPELWTLVLSHR--   88 (237)
Q Consensus        16 ~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~--   88 (237)
                      |++||+|+.....+        |+.|.+|+.|..+.|+.. ..+|...    ....|++. |...|... +...++..  
T Consensus        82 ~~~Gd~V~~~~~~~--------~~~c~~~~~~~~~~c~~~-~~~~~~~~~~~~~~~g~~a~~~~v~~~~-~~~~lP~~~~  151 (361)
T cd08231          82 LKVGDRVTWSVGAP--------CGRCYRCLVGDPTKCENR-KKYGHEASCDDPHLSGGYAEHIYLPPGT-AIVRVPDNVP  151 (361)
T ss_pred             cCCCCEEEEcccCC--------CCCChhHhCcCccccccc-hhccccccccCCCCCcccceEEEecCCC-ceEECCCCCC
Confidence            99999999987666        888999988866666532 1111100    00123332 33333211 01111111  


Q ss_pred             --c-ccc-ccccHH-HHHHhcCC-CCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 026506           89 --T-QIL-YIADIS-FVIMYLEL-VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSF  161 (237)
Q Consensus        89 --~-~~~-~~~~~~-~~~~~~~~-~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~  161 (237)
                        . ..+ .+...+ ..+..+.. .++.+||..|+|. |..+.++++..+ ..++++++.+++..+.+++    .+++..
T Consensus       152 ~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~v  226 (361)
T cd08231         152 DEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAG-ARRVIVIDGSPERLELARE----FGADAT  226 (361)
T ss_pred             HHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCCeE
Confidence              1 111 111111 12333443 4889999999877 777778888763 2389999988888777754    455332


Q ss_pred             EEEEEccccC--CCCCC-CCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          162 VTVGVRDIQG--QGFPD-EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       162 i~~~~~d~~~--~~~~~-~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +.....+..+  ..+.. ..+..+|+++..... ...+..+.+.|+++|+++.++.
T Consensus       227 i~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~-~~~~~~~~~~l~~~G~~v~~g~  281 (361)
T cd08231         227 IDIDELPDPQRRAIVRDITGGRGADVVIEASGH-PAAVPEGLELLRRGGTYVLVGS  281 (361)
T ss_pred             EcCcccccHHHHHHHHHHhCCCCCcEEEECCCC-hHHHHHHHHHhccCCEEEEEcC
Confidence            2222111100  00100 111469997755443 2367888999999999997764

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.59  E-value=7e-07  Score=79.06  Aligned_cols=82  Identities=13%  Similarity=0.181  Sum_probs=58.5

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCC-------CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCC--CCCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAP-------TGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF--PDEF  178 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~-------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~  178 (237)
                      ...+|+|.+||+|.+...++..+..       ...++++|+++..++.++.++...+... +++...|.....+  ....
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~-~~i~~~d~l~~~~~~~~~~  109 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLE-INVINFNSLSYVLLNIESY  109 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCC-ceeeecccccccccccccc
Confidence            3469999999999999988876521       2578999999999999999987665222 5556666543211  1111


Q ss_pred             CCCCCEEEEeCC
Q 026506          179 SGLADSIFLDLP  190 (237)
Q Consensus       179 ~~~~D~v~~~~~  190 (237)
                      .+.||+|+.|+|
T Consensus       110 ~~~fD~IIgNPP  121 (524)
T TIGR02987       110 LDLFDIVITNPP  121 (524)
T ss_pred             cCcccEEEeCCC
Confidence            257999999886

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.59  E-value=8.4e-07  Score=69.63  Aligned_cols=101  Identities=20%  Similarity=0.245  Sum_probs=63.7

Q ss_pred             HHHhcCC-CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHH-HHHHHHHcCCCCcEEEEEccccCCCCCCC
Q 026506          100 VIMYLEL-VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAAS-AREDFERTGVSSFVTVGVRDIQGQGFPDE  177 (237)
Q Consensus       100 ~~~~~~~-~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~-a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  177 (237)
                      ++..+++ .++.++||+|||+|.++..+++.  +..+|+++|+++.++.. .+++      .....+...|+....+.+.
T Consensus        66 ~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~l~~~l~~~------~~v~~~~~~ni~~~~~~~~  137 (228)
T TIGR00478        66 ALEEFNIDVKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQLAEKLRQD------ERVKVLERTNIRYVTPADI  137 (228)
T ss_pred             HHHhcCCCCCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHhcC------CCeeEeecCCcccCCHhHc
Confidence            4444443 46789999999999999988886  35789999999977765 3321      1112233334432111110


Q ss_pred             --CCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEE
Q 026506          178 --FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       178 --~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                        .-..+|++|+....   .+..+.+.|++ |.++++
T Consensus       138 ~~d~~~~DvsfiS~~~---~l~~i~~~l~~-~~~~~L  170 (228)
T TIGR00478       138 FPDFATFDVSFISLIS---ILPELDLLLNP-NDLTLL  170 (228)
T ss_pred             CCCceeeeEEEeehHh---HHHHHHHHhCc-CeEEEE
Confidence              01357877765432   68888999999 776644

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.58  E-value=1.2e-06  Score=74.65  Aligned_cols=121  Identities=17%  Similarity=0.267  Sum_probs=82.1

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      +-++++..++..++|+.||||.+++.+++..   .+|+++|++++.++.|+.|+..+|+.| .+++++-+++ .++....
T Consensus       375 i~e~~~l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~NgisN-a~Fi~gqaE~-~~~sl~~  449 (534)
T KOG2187|consen  375 IGEWAGLPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGISN-ATFIVGQAED-LFPSLLT  449 (534)
T ss_pred             HHHHhCCCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCccc-eeeeecchhh-ccchhcc
Confidence            5677888899999999999999998888774   789999999999999999999999988 9999885443 2222111


Q ss_pred             C---CCC-EEEEeCCCh---hchHHHHHhcccCCCEEEEEeCCHHH--HHHHHHHHH
Q 026506          180 G---LAD-SIFLDLPQP---WLAIPSAKKMLKQDGILCSFSPCIEQ--VQRSCESLR  227 (237)
Q Consensus       180 ~---~~D-~v~~~~~~~---~~~l~~~~~~L~~gG~l~~~~~~~~~--~~~~~~~l~  227 (237)
                      .   .-+ ++++|+|..   ..+++.+...-++--.+  |..|...  ...+....+
T Consensus       450 ~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlv--yvSCn~~t~ar~v~~lc~  504 (534)
T KOG2187|consen  450 PCCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLV--YVSCNPHTAARNVIDLCS  504 (534)
T ss_pred             cCCCCCceEEEECCCcccccHHHHHHHHhccCccceE--EEEcCHHHhhhhHHHhhc
Confidence            1   345 567787743   23344433333243333  3434322  455554444

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=98.58  E-value=1.3e-06  Score=73.81  Aligned_cols=106  Identities=14%  Similarity=0.157  Sum_probs=69.5

Q ss_pred             HhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc--cccCCCCCCCC
Q 026506          102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR--DIQGQGFPDEF  178 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~--d~~~~~~~~~~  178 (237)
                      ...++.++++||..|+|. |..+.++++..+ ...+++++.+++..+.+++    .|....+.....  ++.+ .+....
T Consensus       177 ~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~-~l~~~~  250 (365)
T cd05279         177 NTAKVTPGSTCAVFGLGGVGLSVIMGCKAAG-ASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVE-VLTEMT  250 (365)
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHH-HHHHHh
Confidence            345678899999999887 777777888763 3468889988888888755    454332332222  2111 011111


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhccc-CCCEEEEEeC
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLK-QDGILCSFSP  214 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~  214 (237)
                      ++.+|+++..... ...+..+.+.|+ ++|+++.++.
T Consensus       251 ~~~~d~vid~~g~-~~~~~~~~~~l~~~~G~~v~~g~  286 (365)
T cd05279         251 DGGVDYAFEVIGS-ADTLKQALDATRLGGGTSVVVGV  286 (365)
T ss_pred             CCCCcEEEECCCC-HHHHHHHHHHhccCCCEEEEEec
Confidence            2569998754433 347888999999 9999987653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=98.57  E-value=7.9e-07  Score=74.18  Aligned_cols=177  Identities=23%  Similarity=0.239  Sum_probs=101.4

Q ss_pred             CCCCCCCEEEEEE-cCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc---
Q 026506           14 RCIKEGDLVIVYE-RHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR---   88 (237)
Q Consensus        14 ~~~~~Gd~V~i~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---   88 (237)
                      ..+++||||++.. ...        ||.|..|..|.++.|.... ..|.   ...|.+. +...|..  +...++..   
T Consensus        74 ~~~~~Gd~V~~~~~~~~--------~~~~~~~~~g~~~~c~~~~-~~~~---~~~g~~a~~~~v~~~--~~~~lp~~~~~  139 (333)
T cd08296          74 SRWKVGDRVGVGWHGGH--------CGTCDACRRGDFVHCENGK-VTGV---TRDGGYAEYMLAPAE--ALARIPDDLDA  139 (333)
T ss_pred             ccCCCCCEEEeccccCC--------CCCChhhhCcCcccCCCCC-ccCc---ccCCcceeEEEEchh--heEeCCCCCCH
Confidence            3588999998743 223        8999999999888886321 1111   1122222 2222221  11111111   


Q ss_pred             --ccccc-cccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 026506           89 --TQILY-IADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT  163 (237)
Q Consensus        89 --~~~~~-~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~  163 (237)
                        ...+. ....+ ..+..+.+.++++||..|+|. |..+.++++..+  .++++++.+++..+.+++    .|.+..+.
T Consensus       140 ~~aa~l~~~~~ta~~~~~~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~----~g~~~~i~  213 (333)
T cd08296         140 AEAAPLLCAGVTTFNALRNSGAKPGDLVAVQGIGGLGHLAVQYAAKMG--FRTVAISRGSDKADLARK----LGAHHYID  213 (333)
T ss_pred             HHhhhhhhhhHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHH----cCCcEEec
Confidence              11111 11111 123445778899999999877 777778888763  479999999888888865    45433222


Q ss_pred             EEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          164 VGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       164 ~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ....+... .+...  ..+|+++..... ...++.+.+.|+++|+++.++.
T Consensus       214 ~~~~~~~~-~~~~~--~~~d~vi~~~g~-~~~~~~~~~~l~~~G~~v~~g~  260 (333)
T cd08296         214 TSKEDVAE-ALQEL--GGAKLILATAPN-AKAISALVGGLAPRGKLLILGA  260 (333)
T ss_pred             CCCccHHH-HHHhc--CCCCEEEECCCc-hHHHHHHHHHcccCCEEEEEec
Confidence            22222211 11111  358997754322 3478889999999999997753

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=98.55  E-value=1.4e-06  Score=73.41  Aligned_cols=181  Identities=17%  Similarity=0.166  Sum_probs=98.6

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceE---EeccCcEE-EEECCCHHHHhhhcCCc-
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMV---FSNKGGFV-YLLAPTPELWTLVLSHR-   88 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~-   88 (237)
                      ..|++||||.+....+       .|+.|.+|+.|..+.|......++...   ....|.+. |...|....+  ..+.. 
T Consensus        83 ~~~~~Gd~V~~~~~~~-------~c~~C~~c~~g~~~~c~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~--~iP~~~  153 (357)
T PLN02514         83 SKFTVGDIVGVGVIVG-------CCGECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQGGFASAMVVDQKFVV--KIPEGM  153 (357)
T ss_pred             ccccCCCEEEEcCccc-------cCCCChhHhCCCcccCCCccccccccccCCccCCCccccEEEEchHHeE--ECCCCC
Confidence            4689999998744221       288999999998887763211100000   00123333 3444432211  11111 


Q ss_pred             ----ccccccc-cHHH-HHHhcC-CCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC
Q 026506           89 ----TQILYIA-DISF-VIMYLE-LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS  160 (237)
Q Consensus        89 ----~~~~~~~-~~~~-~~~~~~-~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~  160 (237)
                          ...+... ..+. .+..+. .+++++++..|+|+ |..+.++++..+  .++++++.+++..+.+.+.   .|.+.
T Consensus       154 ~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G--~~vi~~~~~~~~~~~~~~~---~Ga~~  228 (357)
T PLN02514        154 APEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMG--HHVTVISSSDKKREEALEH---LGADD  228 (357)
T ss_pred             CHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHh---cCCcE
Confidence                1111111 1111 222233 46899999999888 778888888863  4688888777766555432   45432


Q ss_pred             cEEEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          161 FVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       161 ~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .+..  .+.  ..+.... ..+|+++...+.. ..+..+.+.|+++|+++.++.
T Consensus       229 ~i~~--~~~--~~~~~~~-~~~D~vid~~g~~-~~~~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        229 YLVS--SDA--AEMQEAA-DSLDYIIDTVPVF-HPLEPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             EecC--CCh--HHHHHhc-CCCcEEEECCCch-HHHHHHHHHhccCCEEEEECC
Confidence            1111  110  1111111 3589977655433 378889999999999997764

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.55  E-value=9.7e-07  Score=68.21  Aligned_cols=114  Identities=17%  Similarity=0.182  Sum_probs=77.5

Q ss_pred             EEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe-CC
Q 026506          112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD-LP  190 (237)
Q Consensus       112 vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~-~~  190 (237)
                      |+|+||-.|++.+.++.. +...+++++|+++.-++.|++++...++.+++++..+|..+ .++..  ...|.|++. ++
T Consensus         1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~~~--e~~d~ivIAGMG   76 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLKPG--EDVDTIVIAGMG   76 (205)
T ss_dssp             EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G--GG--G---EEEEEEE-
T ss_pred             CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccCCC--CCCCEEEEecCC
Confidence            689999999999999887 45578999999999999999999999998889999999873 44441  237888764 33


Q ss_pred             Ch--hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCc
Q 026506          191 QP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT  231 (237)
Q Consensus       191 ~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~  231 (237)
                      ..  .+.+++....++..-.++ +.|.. ....+.++|.+ +|.
T Consensus        77 G~lI~~ILe~~~~~~~~~~~lI-LqP~~-~~~~LR~~L~~~gf~  118 (205)
T PF04816_consen   77 GELIIEILEAGPEKLSSAKRLI-LQPNT-HAYELRRWLYENGFE  118 (205)
T ss_dssp             HHHHHHHHHHTGGGGTT--EEE-EEESS--HHHHHHHHHHTTEE
T ss_pred             HHHHHHHHHhhHHHhccCCeEE-EeCCC-ChHHHHHHHHHCCCE
Confidence            22  245666666666555555 66654 45666667777 665

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=98.54  E-value=2.8e-06  Score=68.13  Aligned_cols=88  Identities=22%  Similarity=0.294  Sum_probs=70.8

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC--CCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDE  177 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~  177 (237)
                      ++..+.++++...+|.--|.|+.+..++..+++.++++++|.++.+++.|++.+..++  .++.+++.++.+.  .++..
T Consensus        15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~   92 (314)
T COG0275          15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKEL   92 (314)
T ss_pred             HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhc
Confidence            6778889999999999999999999999998777889999999999999999987655  5588888887651  11221


Q ss_pred             CCCCCCEEEEeC
Q 026506          178 FSGLADSIFLDL  189 (237)
Q Consensus       178 ~~~~~D~v~~~~  189 (237)
                      ..+.+|-|+.|.
T Consensus        93 ~i~~vDGiL~DL  104 (314)
T COG0275          93 GIGKVDGILLDL  104 (314)
T ss_pred             CCCceeEEEEec
Confidence            125788887654

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.54  E-value=3.1e-07  Score=73.86  Aligned_cols=118  Identities=19%  Similarity=0.169  Sum_probs=79.8

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC-CCC----cEEEEEccccCCCCCCCC--
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG-VSS----FVTVGVRDIQGQGFPDEF--  178 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~----~i~~~~~d~~~~~~~~~~--  178 (237)
                      .++++.++++|||-|+-++.+-.+  +-..++++|+.+..++.|+++..... ...    ...++.+|-....+....  
T Consensus       115 ~~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~  192 (389)
T KOG1975|consen  115 TKRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF  192 (389)
T ss_pred             hccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence            467899999999999887766544  34789999999999999988765432 111    256777776542111110  


Q ss_pred             -CCCCCEEEEe---------CCChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh
Q 026506          179 -SGLADSIFLD---------LPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL  228 (237)
Q Consensus       179 -~~~~D~v~~~---------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~  228 (237)
                       ..+||+|-+-         -....-++.++.+.|+|||.++-..|...   .+.+.|+.
T Consensus       193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd---~Ii~rlr~  249 (389)
T KOG1975|consen  193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD---VIIKRLRA  249 (389)
T ss_pred             CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH---HHHHHHHh
Confidence             1349998431         11223479999999999999997777554   45555554

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=98.54  E-value=6.7e-07  Score=75.64  Aligned_cols=105  Identities=20%  Similarity=0.257  Sum_probs=69.0

Q ss_pred             hcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCC
Q 026506          103 YLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL  181 (237)
Q Consensus       103 ~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  181 (237)
                      ...+.++++||..|+|. |..+.++++..+ ...+++++.+++..+.+++    .+.+..+.....++.+ .+....+.+
T Consensus       181 ~~~~~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~~----~g~~~~i~~~~~~~~~-~v~~~~~~~  254 (365)
T cd08278         181 VLKPRPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAKE----LGATHVINPKEEDLVA-AIREITGGG  254 (365)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCcEEecCCCcCHHH-HHHHHhCCC
Confidence            45678899999999877 777888888864 3479999999988887765    3443212211112111 011001256


Q ss_pred             CCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          182 ADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       182 ~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +|+|+-..... ..+..+.+.|+++|+++.++.
T Consensus       255 ~d~vld~~g~~-~~~~~~~~~l~~~G~~v~~g~  286 (365)
T cd08278         255 VDYALDTTGVP-AVIEQAVDALAPRGTLALVGA  286 (365)
T ss_pred             CcEEEECCCCc-HHHHHHHHHhccCCEEEEeCc
Confidence            99977555433 378899999999999998764

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.53  E-value=1.2e-06  Score=70.39  Aligned_cols=102  Identities=20%  Similarity=0.151  Sum_probs=64.8

Q ss_pred             CCEEEEEccCccHH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          109 GCLVLESGTGSGSL-TTSLARAVAPTGHVYTFDFHEQRAASAREDFE-RTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       109 ~~~vldiG~G~G~~-~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      ..+|+=||+|+=-+ ++.++...+....++.+|+++++.+.+++.+. ..++...+.+..+|..+.....   ..||+|+
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl---~~~DvV~  197 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL---KEYDVVF  197 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-------SEEE
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc---ccCCEEE
Confidence            35999999999554 45556555556789999999999999999877 5566677999999987532222   5799998


Q ss_pred             EeCC------ChhchHHHHHhcccCCCEEEEEe
Q 026506          187 LDLP------QPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       187 ~~~~------~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +..-      .-.+.++++.+.++||..+++=+
T Consensus       198 lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs  230 (276)
T PF03059_consen  198 LAALVGMDAEPKEEILEHLAKHMAPGARLVVRS  230 (276)
T ss_dssp             E-TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred             EhhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence            7542      44579999999999999988543

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=98.52  E-value=1.4e-06  Score=72.89  Aligned_cols=185  Identities=18%  Similarity=0.152  Sum_probs=97.8

Q ss_pred             CCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc---
Q 026506           13 TRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR---   88 (237)
Q Consensus        13 ~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---   88 (237)
                      ...+++||+|......+        ||.|.+|..|...+|+. +...........|.+. |...+..+.+...++..   
T Consensus        73 v~~~~~Gd~V~~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~~~~  143 (347)
T cd05278          73 VKRLKPGDRVSVPCITF--------CGRCRFCRRGYHAHCEN-GLWGWKLGNRIDGGQAEYVRVPYADMNLAKIPDGLPD  143 (347)
T ss_pred             ccccCCCCEEEecCCCC--------CCCChhHhCcCcccCcC-CCcccccccCCCCeeeEEEEecchhCeEEECCCCCCH
Confidence            34589999999977556        88888888887666652 1100000000112222 22222110010111100   


Q ss_pred             ---ccccccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 026506           89 ---TQILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT  163 (237)
Q Consensus        89 ---~~~~~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~  163 (237)
                         ..+......+ ..+...+..++++||..|+|. |..++++++..+ ...+++++.++...+.+++    .+....+.
T Consensus       144 ~~aa~l~~~~~ta~~~~~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~  218 (347)
T cd05278         144 EDALMLSDILPTGFHGAELAGIKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKE----AGATDIIN  218 (347)
T ss_pred             HHHhhhcchhhheeehhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH----hCCcEEEc
Confidence               0000000000 012344577899999988765 677777888763 2478888888877777665    34322222


Q ss_pred             EEEccccCCCCCC-CCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          164 VGVRDIQGQGFPD-EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       164 ~~~~d~~~~~~~~-~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ....++.+ .+.. ..+..+|+++..... ...++.+.+.|+++|+++.++
T Consensus       219 ~~~~~~~~-~i~~~~~~~~~d~vld~~g~-~~~~~~~~~~l~~~G~~v~~g  267 (347)
T cd05278         219 PKNGDIVE-QILELTGGRGVDCVIEAVGF-EETFEQAVKVVRPGGTIANVG  267 (347)
T ss_pred             CCcchHHH-HHHHHcCCCCCcEEEEccCC-HHHHHHHHHHhhcCCEEEEEc
Confidence            22222211 0100 111469997754433 247888999999999998664

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.52  E-value=1.5e-06  Score=71.10  Aligned_cols=120  Identities=17%  Similarity=0.146  Sum_probs=87.8

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH---c--C-CCCcEEEEEccccCCCCCCCCC
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER---T--G-VSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~---~--~-~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ++...++|.+|.|-|.-...+.+. +...+++-+|.+|.+++.++++...   +  . .+.++.+...|+.+  +.....
T Consensus       287 ~~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~--wlr~a~  363 (508)
T COG4262         287 VRGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQ--WLRTAA  363 (508)
T ss_pred             ccccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHH--HHHhhc
Confidence            355679999999999999888887 3368999999999999999854322   1  1 13568888889876  333333


Q ss_pred             CCCCEEEEeCCChh----------chHHHHHhcccCCCEEEEEeCCH----HHHHHHHHHHHh
Q 026506          180 GLADSIFLDLPQPW----------LAIPSAKKMLKQDGILCSFSPCI----EQVQRSCESLRL  228 (237)
Q Consensus       180 ~~~D~v~~~~~~~~----------~~l~~~~~~L~~gG~l~~~~~~~----~~~~~~~~~l~~  228 (237)
                      ..||.|+.|.++|.          ++...+.+.|+++|.+++-....    +...++...+++
T Consensus       364 ~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~  426 (508)
T COG4262         364 DMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKS  426 (508)
T ss_pred             ccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHh
Confidence            68999999988774          46777889999999999765432    223444555555

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=98.51  E-value=9.4e-07  Score=74.00  Aligned_cols=105  Identities=17%  Similarity=0.218  Sum_probs=67.7

Q ss_pred             hcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCC
Q 026506          103 YLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL  181 (237)
Q Consensus       103 ~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  181 (237)
                      ...+.++.++|..|+|. |..+.++++..+. .++++++.++...+.+++    .+.+..+.....+..........+..
T Consensus       161 ~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~  235 (345)
T cd08286         161 NGKVKPGDTVAIVGAGPVGLAALLTAQLYSP-SKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELTDGRG  235 (345)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHhCCCC
Confidence            44578899999988876 6677778887632 578889998888777765    45543233332232110000011146


Q ss_pred             CCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          182 ADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       182 ~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +|+++...... ..++.+.+.|+++|+++.++
T Consensus       236 ~d~vld~~g~~-~~~~~~~~~l~~~g~~v~~g  266 (345)
T cd08286         236 VDVVIEAVGIP-ATFELCQELVAPGGHIANVG  266 (345)
T ss_pred             CCEEEECCCCH-HHHHHHHHhccCCcEEEEec
Confidence            99977554433 36788889999999998765

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>PLN02702 L-idonate 5-dehydrogenase

Probab=98.51  E-value=8.8e-07  Score=74.83  Aligned_cols=182  Identities=17%  Similarity=0.223  Sum_probs=103.7

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc----
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR----   88 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----   88 (237)
                      ..|++||+|......+        |+.|.+|+.|..+.|.... .++.  ....|.+. |...|....+  .++..    
T Consensus        93 ~~~~~Gd~V~~~~~~~--------~~~c~~c~~g~~~~c~~~~-~~~~--~~~~g~~~~y~~v~~~~~~--~~P~~l~~~  159 (364)
T PLN02702         93 KHLVVGDRVALEPGIS--------CWRCNLCKEGRYNLCPEMK-FFAT--PPVHGSLANQVVHPADLCF--KLPENVSLE  159 (364)
T ss_pred             CCCCCCCEEEEcCCCC--------CCCCcchhCcCcccCCCcc-ccCC--CCCCCcccceEEcchHHeE--ECCCCCCHH
Confidence            4589999999877666        8889999888877775211 0110  00123332 2333321111  11111    


Q ss_pred             -ccccccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 026506           89 -TQILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG  165 (237)
Q Consensus        89 -~~~~~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~  165 (237)
                       .....+...+ ..+...++.++.+||.+|+|. |..+.++++..+ ...+++++.+++..+.+++    .+.+..+.+.
T Consensus       160 ~aa~~~~~~~a~~~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~  234 (364)
T PLN02702        160 EGAMCEPLSVGVHACRRANIGPETNVLVMGAGPIGLVTMLAARAFG-APRIVIVDVDDERLSVAKQ----LGADEIVLVS  234 (364)
T ss_pred             HHhhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----hCCCEEEecC
Confidence             1111111111 123456678899999998876 777788888764 3568899998888887665    4544322221


Q ss_pred             --EccccCC--CCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          166 --VRDIQGQ--GFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       166 --~~d~~~~--~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                        ..++.+.  .+.....+.+|+|+...+.. ..+..+.+.|+++|+++.++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~d~vid~~g~~-~~~~~~~~~l~~~G~~v~~g~  286 (364)
T PLN02702        235 TNIEDVESEVEEIQKAMGGGIDVSFDCVGFN-KTMSTALEATRAGGKVCLVGM  286 (364)
T ss_pred             cccccHHHHHHHHhhhcCCCCCEEEECCCCH-HHHHHHHHHHhcCCEEEEEcc
Confidence              1122110  01001124699977655433 478999999999999987753

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=98.49  E-value=1.8e-06  Score=71.26  Aligned_cols=89  Identities=20%  Similarity=0.200  Sum_probs=63.0

Q ss_pred             CCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       107 ~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      .+++++|.+|+|+ |.++.++++..+ ...++++|.++++++.+++.    ..   +     |..+.  .   ..++|+|
T Consensus       143 ~~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~~----~~---i-----~~~~~--~---~~g~Dvv  204 (308)
T TIGR01202       143 VKVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRRRDGATGY----EV---L-----DPEKD--P---RRDYRAI  204 (308)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhhhc----cc---c-----Chhhc--c---CCCCCEE
Confidence            4578999999998 888888888863 35677889988887766541    11   1     11110  1   1469998


Q ss_pred             EEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          186 FLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      |.....+ ..++.+.+.|+++|++++++.
T Consensus       205 id~~G~~-~~~~~~~~~l~~~G~iv~~G~  232 (308)
T TIGR01202       205 YDASGDP-SLIDTLVRRLAKGGEIVLAGF  232 (308)
T ss_pred             EECCCCH-HHHHHHHHhhhcCcEEEEEee
Confidence            7665544 378999999999999997763

>PRK04148 hypothetical protein; Provisional

Probab=98.48  E-value=2.4e-06  Score=60.99  Aligned_cols=98  Identities=18%  Similarity=0.099  Sum_probs=63.7

Q ss_pred             HHHhcCCCCCCEEEEEccCccH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGS-LTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~-~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      +...+....+.+++|+|||+|. ++..+++.   ...|+++|+++.+++.++++    +    +++...|+++..+.-  
T Consensus         8 l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~----~----~~~v~dDlf~p~~~~--   74 (134)
T PRK04148          8 IAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL----G----LNAFVDDLFNPNLEI--   74 (134)
T ss_pred             HHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh----C----CeEEECcCCCCCHHH--
Confidence            3444444456899999999997 66555543   37999999999999888774    3    678889998633331  


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhccc-CCCEEEE
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLK-QDGILCS  211 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~-~gG~l~~  211 (237)
                      -..+|+|+.--|.+. ....+.++-+ -|.-+++
T Consensus        75 y~~a~liysirpp~e-l~~~~~~la~~~~~~~~i  107 (134)
T PRK04148         75 YKNAKLIYSIRPPRD-LQPFILELAKKINVPLII  107 (134)
T ss_pred             HhcCCEEEEeCCCHH-HHHHHHHHHHHcCCCEEE
Confidence            157999887544332 3333333333 3334443

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=98.47  E-value=1.5e-06  Score=72.91  Aligned_cols=181  Identities=17%  Similarity=0.170  Sum_probs=100.5

Q ss_pred             CCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCC-----c
Q 026506           15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSH-----R   88 (237)
Q Consensus        15 ~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~   88 (237)
                      .|++||+|......+        |+.|.+|+.|....|... ..+|.. ....|.+. +...+... +...++.     .
T Consensus        85 ~~~~Gd~V~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~g~~-~~~~g~~~~~~~~~~~~-~~~~lP~~~~~~~  153 (350)
T cd08256          85 GVKVGDRVISEQIVP--------CWNCRFCNRGQYWMCQKH-DLYGFQ-NNVNGGMAEYMRFPKEA-IVHKVPDDIPPED  153 (350)
T ss_pred             CCCCCCEEEECCcCC--------CCCChHHhCcCcccCcCc-cceeec-cCCCCcceeeEEccccc-ceEECCCCCCHHH
Confidence            689999999887666        888999998887777521 111110 00122222 22222110 0001110     1


Q ss_pred             ccccccccHHH-HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 026506           89 TQILYIADISF-VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV  166 (237)
Q Consensus        89 ~~~~~~~~~~~-~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~  166 (237)
                      ...+.+..... .+......++++||..|+|. |..+.++++.++ ...+++++.+++..+.+++    .+.+..+....
T Consensus       154 aa~~~~~~ta~~a~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~  228 (350)
T cd08256         154 AILIEPLACALHAVDRANIKFDDVVVLAGAGPLGLGMIGAARLKN-PKKLIVLDLKDERLALARK----FGADVVLNPPE  228 (350)
T ss_pred             HhhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEcCCHHHHHHHHH----cCCcEEecCCC
Confidence            11111111111 23455678899999988877 777788888874 3568889988887776655    45432111111


Q ss_pred             ccccCCCCCC-CCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          167 RDIQGQGFPD-EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       167 ~d~~~~~~~~-~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .++.+ .+.. ..+.++|+++...+.. ..+..+.+.++++|+++.++
T Consensus       229 ~~~~~-~~~~~~~~~~vdvvld~~g~~-~~~~~~~~~l~~~G~~v~~g  274 (350)
T cd08256         229 VDVVE-KIKELTGGYGCDIYIEATGHP-SAVEQGLNMIRKLGRFVEFS  274 (350)
T ss_pred             cCHHH-HHHHHhCCCCCCEEEECCCCh-HHHHHHHHHhhcCCEEEEEc
Confidence            11111 0111 1113599977554433 36788899999999998764

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.45  E-value=1.7e-06  Score=66.95  Aligned_cols=114  Identities=18%  Similarity=0.172  Sum_probs=85.2

Q ss_pred             CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCC-CCEEEE
Q 026506          109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL-ADSIFL  187 (237)
Q Consensus       109 ~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~-~D~v~~  187 (237)
                      +.+++|||+|.|.-++.++-.. +..+++.+|....++.+.+......+++| +++.++.+.+  +...  .. ||+|.+
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~~~~~eL~L~n-v~i~~~RaE~--~~~~--~~~~D~vts  141 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLREVKKELGLEN-VEIVHGRAEE--FGQE--KKQYDVVTS  141 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhc-cCCcEEEEccCchHHHHHHHHHHHhCCCC-eEEehhhHhh--cccc--cccCcEEEe
Confidence            6899999999999988888443 66779999999999999999999999988 9999988875  3321  23 999987


Q ss_pred             eCCC-hhchHHHHHhcccCCCEEEEEe--CCHHHHHHHHHHHHh
Q 026506          188 DLPQ-PWLAIPSAKKMLKQDGILCSFS--PCIEQVQRSCESLRL  228 (237)
Q Consensus       188 ~~~~-~~~~l~~~~~~L~~gG~l~~~~--~~~~~~~~~~~~l~~  228 (237)
                      -+-. -...++-+...+++||.++++-  ...+...+..++...
T Consensus       142 RAva~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~  185 (215)
T COG0357         142 RAVASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILP  185 (215)
T ss_pred             ehccchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHh
Confidence            6533 3347788899999999876442  223444444444444

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.44  E-value=1.9e-06  Score=67.35  Aligned_cols=111  Identities=21%  Similarity=0.248  Sum_probs=79.0

Q ss_pred             HHHHHhcCCCCCC-EEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC
Q 026506           98 SFVIMYLELVPGC-LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD  176 (237)
Q Consensus        98 ~~~~~~~~~~~~~-~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  176 (237)
                      ..++..+...++. .|.|+|||-+-++.    .  ...+|+.+|+-+              + + -++...|+.+.++++
T Consensus       169 d~ii~~ik~r~~~~vIaD~GCGEakiA~----~--~~~kV~SfDL~a--------------~-~-~~V~~cDm~~vPl~d  226 (325)
T KOG3045|consen  169 DVIIRKIKRRPKNIVIADFGCGEAKIAS----S--ERHKVHSFDLVA--------------V-N-ERVIACDMRNVPLED  226 (325)
T ss_pred             HHHHHHHHhCcCceEEEecccchhhhhh----c--cccceeeeeeec--------------C-C-CceeeccccCCcCcc
Confidence            3467777655544 77899999987764    1  236799999732              1 1 456778888766666


Q ss_pred             CCCCCCCEEEEeCC----ChhchHHHHHhcccCCCEEEEEeCCH--HHHHHHHHHHHh-cCccc
Q 026506          177 EFSGLADSIFLDLP----QPWLAIPSAKKMLKQDGILCSFSPCI--EQVQRSCESLRL-NFTGK  233 (237)
Q Consensus       177 ~~~~~~D~v~~~~~----~~~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~l~~-~f~~v  233 (237)
                         +++|+++.+..    +...++.++.++|++||.+++-....  .....+.+.+.. ||...
T Consensus       227 ---~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~  287 (325)
T KOG3045|consen  227 ---ESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVK  287 (325)
T ss_pred             ---CcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeee
Confidence               88999987642    34468999999999999999765433  456667777777 77643

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.41  E-value=1.4e-06  Score=70.74  Aligned_cols=103  Identities=20%  Similarity=0.285  Sum_probs=69.9

Q ss_pred             CCEEEEEccCccHH----HHHHHHHhC---CCcEEEEEeCCHHHHHHHHHHH------------------HHc-----C-
Q 026506          109 GCLVLESGTGSGSL----TTSLARAVA---PTGHVYTFDFHEQRAASAREDF------------------ERT-----G-  157 (237)
Q Consensus       109 ~~~vldiG~G~G~~----~~~~~~~~~---~~~~v~~vD~~~~~~~~a~~~~------------------~~~-----~-  157 (237)
                      .-+|+..||++|--    ++.+.+..+   ...+|+|+|+|+..++.|++..                  ...     + 
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            36999999999952    333333321   1357999999999999998742                  000     0 


Q ss_pred             ------CCCcEEEEEccccCCCCCCCCCCCCCEEEE-------eCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          158 ------VSSFVTVGVRDIQGQGFPDEFSGLADSIFL-------DLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       158 ------~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~-------~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                            +...+.+...|+.+.+++.  .+.||+|++       +......+++.+.+.|+|||.|+ +++
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~--~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~-lG~  262 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAV--PGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLF-AGH  262 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCcc--CCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEE-EeC
Confidence                  1244677788887534432  168999986       22344578999999999999876 444

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=98.41  E-value=7.2e-08  Score=66.76  Aligned_cols=97  Identities=29%  Similarity=0.305  Sum_probs=41.2

Q ss_pred             EEEccCccHHHHHHHHHhCCCc--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCC
Q 026506          113 LESGTGSGSLTTSLARAVAPTG--HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP  190 (237)
Q Consensus       113 ldiG~G~G~~~~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~  190 (237)
                      ||+|+..|..+..+++.+....  +++++|..+. .+..++.++..+..+++++..++..+ .++....+++|++++|..
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~-~l~~~~~~~~dli~iDg~   78 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPD-FLPSLPDGPIDLIFIDGD   78 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THH-HHHHHHH--EEEEEEES-
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHH-HHHHcCCCCEEEEEECCC
Confidence            6899999999988887765443  7999999885 33344444445666669999999864 121111268999999986


Q ss_pred             Ch----hchHHHHHhcccCCCEEEE
Q 026506          191 QP----WLAIPSAKKMLKQDGILCS  211 (237)
Q Consensus       191 ~~----~~~l~~~~~~L~~gG~l~~  211 (237)
                      ..    ...++.+.+.|+|||.+++
T Consensus        79 H~~~~~~~dl~~~~~~l~~ggviv~  103 (106)
T PF13578_consen   79 HSYEAVLRDLENALPRLAPGGVIVF  103 (106)
T ss_dssp             --HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHcCCCeEEEE
Confidence            43    2468889999999999885

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=98.40  E-value=5.7e-06  Score=69.25  Aligned_cols=181  Identities=19%  Similarity=0.202  Sum_probs=98.8

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCccc--
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHRTQ--   90 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--   90 (237)
                      ..+++||+|......+        ||.|..|..|...++.... -.+.   ...|++. |...|........++....  
T Consensus        73 ~~~~~Gd~V~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~---~~~g~~~~~~~v~~~~~~~~~lP~~l~~~  140 (345)
T cd08287          73 TSVKPGDFVIAPFAIS--------DGTCPFCRAGFTTSCVHGG-FWGA---FVDGGQGEYVRVPLADGTLVKVPGSPSDD  140 (345)
T ss_pred             CccCCCCEEEeccccC--------CCCChhhhCcCcccCCCCC-cccC---CCCCceEEEEEcchhhCceEECCCCCChh
Confidence            3588999998754444        7888888888766664211 1111   1123333 3333321111111111100  


Q ss_pred             --cc-------ccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC
Q 026506           91 --IL-------YIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS  159 (237)
Q Consensus        91 --~~-------~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~  159 (237)
                        ..       .....+ ..+......++.+|+..|+|. |..+.++++..+ ...+++++.+++..+.+++    .|++
T Consensus       141 ~~~~~~~~~l~~~~~~a~~~~~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~----~ga~  215 (345)
T cd08287         141 EDLLPSLLALSDVMGTGHHAAVSAGVRPGSTVVVVGDGAVGLCAVLAAKRLG-AERIIAMSRHEDRQALARE----FGAT  215 (345)
T ss_pred             hhhhhhhHhhhcHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCc
Confidence              00       000111 122345677899999999887 777778888763 3468999988877776665    4543


Q ss_pred             CcEEEEEccccCCCCCC-CCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          160 SFVTVGVRDIQGQGFPD-EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       160 ~~i~~~~~d~~~~~~~~-~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ..++....+..+ .+.. .....+|+++..... ...+..+.+.++++|+++.++
T Consensus       216 ~v~~~~~~~~~~-~i~~~~~~~~~d~il~~~g~-~~~~~~~~~~l~~~g~~v~~g  268 (345)
T cd08287         216 DIVAERGEEAVA-RVRELTGGVGADAVLECVGT-QESMEQAIAIARPGGRVGYVG  268 (345)
T ss_pred             eEecCCcccHHH-HHHHhcCCCCCCEEEECCCC-HHHHHHHHHhhccCCEEEEec
Confidence            322222111111 0100 111468997754433 347899999999999998765

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=98.39  E-value=3.4e-06  Score=72.48  Aligned_cols=108  Identities=22%  Similarity=0.328  Sum_probs=68.0

Q ss_pred             hcCCCCCCEEEEEc-cCc-cHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHc----CCCC-cEEEEE-ccccCCC
Q 026506          103 YLELVPGCLVLESG-TGS-GSLTTSLARAVA-PTGHVYTFDFHEQRAASAREDFERT----GVSS-FVTVGV-RDIQGQG  173 (237)
Q Consensus       103 ~~~~~~~~~vldiG-~G~-G~~~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~----~~~~-~i~~~~-~d~~~~~  173 (237)
                      ...+++|++|+.+| +|+ |.++.++++..+ +..+++++|.++++++.+++.....    |... .++... .++.+ .
T Consensus       170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~-~  248 (410)
T cd08238         170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHA-T  248 (410)
T ss_pred             hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHH-H
Confidence            34678899999997 577 888888888763 2347999999999999998742111    2211 011110 11111 0


Q ss_pred             CCC-CCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEE
Q 026506          174 FPD-EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       174 ~~~-~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                      ... ..+.++|+++...+.+ ..+..+.+.++++|.++++
T Consensus       249 v~~~t~g~g~D~vid~~g~~-~~~~~a~~~l~~~G~~v~~  287 (410)
T cd08238         249 LMELTGGQGFDDVFVFVPVP-ELVEEADTLLAPDGCLNFF  287 (410)
T ss_pred             HHHHhCCCCCCEEEEcCCCH-HHHHHHHHHhccCCeEEEE
Confidence            100 1114699988765543 4788999999999877655

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.37  E-value=1.7e-06  Score=69.44  Aligned_cols=102  Identities=25%  Similarity=0.315  Sum_probs=66.1

Q ss_pred             CCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          106 LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       106 ~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      ..++.+||..|+|+ |..+..+++..+  .++++++.+++..+.+++.    +....++....+...... ......+|+
T Consensus       132 ~~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~-~~~~~~~d~  204 (271)
T cd05188         132 LKPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAKEL----GADHVIDYKEEDLEEELR-LTGGGGADV  204 (271)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHHh----CCceeccCCcCCHHHHHH-HhcCCCCCE
Confidence            47899999999987 666777777753  7899999998887777552    322211111111110000 011256999


Q ss_pred             EEEeCCChhchHHHHHhcccCCCEEEEEeCC
Q 026506          185 IFLDLPQPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       185 v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      ++...... ..+..+.+.|+++|+++.++..
T Consensus       205 vi~~~~~~-~~~~~~~~~l~~~G~~v~~~~~  234 (271)
T cd05188         205 VIDAVGGP-ETLAQALRLLRPGGRIVVVGGT  234 (271)
T ss_pred             EEECCCCH-HHHHHHHHhcccCCEEEEEccC
Confidence            88765542 3678889999999999977643

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.37  E-value=1.1e-05  Score=64.58  Aligned_cols=120  Identities=12%  Similarity=0.123  Sum_probs=87.0

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAP-TGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ...-+||||.||+|.....+....+. ...+...|.++..++..++.++..|+.+.+++..+|+++..-.......++++
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~  213 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA  213 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence            34569999999999998887777533 36889999999999999999999999997799999998732222222557888


Q ss_pred             EEeC-----CChh---chHHHHHhcccCCCEEEEEe-CCHHHHHHHHHHH
Q 026506          186 FLDL-----PQPW---LAIPSAKKMLKQDGILCSFS-PCIEQVQRSCESL  226 (237)
Q Consensus       186 ~~~~-----~~~~---~~l~~~~~~L~~gG~l~~~~-~~~~~~~~~~~~l  226 (237)
                      ++..     ++..   ..+..+.+++.|||.++.-. |.-.|++-.-..|
T Consensus       214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~L  263 (311)
T PF12147_consen  214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVL  263 (311)
T ss_pred             EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHH
Confidence            7643     2322   35788899999999998443 3444544333333

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=98.36  E-value=1.7e-06  Score=70.51  Aligned_cols=90  Identities=16%  Similarity=0.203  Sum_probs=62.3

Q ss_pred             HHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC--CCC
Q 026506           98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFP  175 (237)
Q Consensus        98 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~  175 (237)
                      ..+++.+.+.++..++|.--|.|+.+.+++..+++ ++++++|.++++++.+++++...  .+++.+...++.+.  .+.
T Consensus        10 ~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~   86 (310)
T PF01795_consen   10 KEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLK   86 (310)
T ss_dssp             HHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHH
T ss_pred             HHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHH
Confidence            34778888999999999999999999999998865 99999999999999999876543  46699999988761  111


Q ss_pred             CC-CCCCCCEEEEeCC
Q 026506          176 DE-FSGLADSIFLDLP  190 (237)
Q Consensus       176 ~~-~~~~~D~v~~~~~  190 (237)
                      .. ....+|-|++|.+
T Consensus        87 ~~~~~~~~dgiL~DLG  102 (310)
T PF01795_consen   87 ELNGINKVDGILFDLG  102 (310)
T ss_dssp             HTTTTS-EEEEEEE-S
T ss_pred             HccCCCccCEEEEccc
Confidence            11 1257999987654

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=98.36  E-value=3.3e-06  Score=71.29  Aligned_cols=104  Identities=21%  Similarity=0.200  Sum_probs=65.8

Q ss_pred             HhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC--CCCCCC
Q 026506          102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDEF  178 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~  178 (237)
                      ....+.++.+||..|+|. |..+..+++..+ ..++++++.+++..+.+++    .+....+.....+....  .+..  
T Consensus       176 ~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G-~~~Vi~~~~~~~~~~~~~~----~g~~~vv~~~~~~~~~~l~~~~~--  248 (363)
T cd08279         176 NTARVRPGDTVAVIGCGGVGLNAIQGARIAG-ASRIIAVDPVPEKLELARR----FGATHTVNASEDDAVEAVRDLTD--  248 (363)
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHHH----hCCeEEeCCCCccHHHHHHHHcC--
Confidence            345678899999998876 777777887763 2358899888888777754    35422111111121110  1111  


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ...+|+++..... ...+..+.+.|+++|+++.++
T Consensus       249 ~~~vd~vld~~~~-~~~~~~~~~~l~~~G~~v~~g  282 (363)
T cd08279         249 GRGADYAFEAVGR-AATIRQALAMTRKGGTAVVVG  282 (363)
T ss_pred             CCCCCEEEEcCCC-hHHHHHHHHHhhcCCeEEEEe
Confidence            2569987654432 347788999999999998775

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=98.35  E-value=1.2e-05  Score=67.43  Aligned_cols=179  Identities=18%  Similarity=0.171  Sum_probs=101.4

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCC-----
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSH-----   87 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----   87 (237)
                      ..|++||+|...+..+        |+.|..|..|....|..+.. .+.  ....|.+. +...+...  ...++.     
T Consensus        74 ~~~~~Gd~V~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~--~~~~g~~~~~~~v~~~~--~~~lP~~~~~~  140 (343)
T cd05285          74 THLKVGDRVAIEPGVP--------CRTCEFCKSGRYNLCPDMRF-AAT--PPVDGTLCRYVNHPADF--CHKLPDNVSLE  140 (343)
T ss_pred             CCCCCCCEEEEccccC--------CCCChhHhCcCcccCcCccc-ccc--ccCCCceeeeEEecHHH--cEECcCCCCHH
Confidence            4589999999877666        88888898887766642211 000  00122222 22332211  111111     


Q ss_pred             cccccccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 026506           88 RTQILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG  165 (237)
Q Consensus        88 ~~~~~~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~  165 (237)
                      .+..+.+...+ ..+....+.++++||..|+|. |..+.++++..+. ..+++++.+++..+.+++    .+.+..+...
T Consensus       141 ~aa~~~~~~~a~~~~~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~-~~v~~~~~~~~~~~~~~~----~g~~~vi~~~  215 (343)
T cd05285         141 EGALVEPLSVGVHACRRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGA-TKVVVTDIDPSRLEFAKE----LGATHTVNVR  215 (343)
T ss_pred             HhhhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHH----cCCcEEeccc
Confidence            11111111111 123566788999999988877 7777888887632 348888888888777755    3443322222


Q ss_pred             Eccc---cC--CCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          166 VRDI---QG--QGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       166 ~~d~---~~--~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ..+.   .+  .....  +.++|+|+...... ..+....+.|+++|+++.++
T Consensus       216 ~~~~~~~~~~~~~~~~--~~~~d~vld~~g~~-~~~~~~~~~l~~~G~~v~~g  265 (343)
T cd05285         216 TEDTPESAEKIAELLG--GKGPDVVIECTGAE-SCIQTAIYATRPGGTVVLVG  265 (343)
T ss_pred             cccchhHHHHHHHHhC--CCCCCEEEECCCCH-HHHHHHHHHhhcCCEEEEEc
Confidence            2221   00  00111  14599977654432 37888899999999998765

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.34  E-value=3e-07  Score=70.12  Aligned_cols=77  Identities=23%  Similarity=0.221  Sum_probs=63.6

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC----CCCCCCCCCCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ----GFPDEFSGLAD  183 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~~~~D  183 (237)
                      ....|+|..||.|+.+++++...   ..|+++|++|..+..|++|++..|+++++.++++|+.+.    .+..   ..+|
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K---~~~~  167 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADK---IKYD  167 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhh---heee
Confidence            45789999999999998888773   689999999999999999999999999999999999861    1111   3467


Q ss_pred             EEEEeCC
Q 026506          184 SIFLDLP  190 (237)
Q Consensus       184 ~v~~~~~  190 (237)
                      +|+..+|
T Consensus       168 ~vf~spp  174 (263)
T KOG2730|consen  168 CVFLSPP  174 (263)
T ss_pred             eeecCCC
Confidence            8887654

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=98.33  E-value=6.9e-06  Score=68.67  Aligned_cols=179  Identities=20%  Similarity=0.216  Sum_probs=96.3

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCC-----
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSH-----   87 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----   87 (237)
                      ..|++||+|......+        |+.|++|..+....|.-. +.++   ....|.+. +...+....  ..++.     
T Consensus        75 ~~~~~Gd~V~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~---~~~~g~~~~~~~~~~~~~--~~lp~~~~~~  140 (340)
T TIGR00692        75 EGIKVGDYVSVETHIV--------CGKCYACRRGQYHVCQNT-KIFG---VDTDGCFAEYAVVPAQNI--WKNPKSIPPE  140 (340)
T ss_pred             CcCCCCCEEEECCcCC--------CCCChhhhCcChhhCcCc-ceEe---ecCCCcceeEEEeehHHc--EECcCCCChH
Confidence            4589999999887666        777888877765555421 1111   00122222 222222111  11111     


Q ss_pred             cccccccccHHHHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 026506           88 RTQILYIADISFVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV  166 (237)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~  166 (237)
                      .+....+...+.........++.+|+..|+|. |..+..+++..+ ...+++++.+++..+.+++    .+....+....
T Consensus       141 ~a~~~~~~~~a~~~~~~~~~~g~~vlI~~~g~vg~~a~~la~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~  215 (340)
T TIGR00692       141 YATIQEPLGNAVHTVLAGPISGKSVLVTGAGPIGLMAIAVAKASG-AYPVIVSDPNEYRLELAKK----MGATYVVNPFK  215 (340)
T ss_pred             hhhhcchHHHHHHHHHccCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----hCCcEEEcccc
Confidence            11111111111111123356788999888765 667777777763 2348888888887777665    35432222222


Q ss_pred             ccccCC--CCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          167 RDIQGQ--GFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       167 ~d~~~~--~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .++.+.  .+..  ..++|+++..... ...+..+.+.|+++|+++.++.
T Consensus       216 ~~~~~~l~~~~~--~~~~d~vld~~g~-~~~~~~~~~~l~~~g~~v~~g~  262 (340)
T TIGR00692       216 EDVVKEVADLTD--GEGVDVFLEMSGA-PKALEQGLQAVTPGGRVSLLGL  262 (340)
T ss_pred             cCHHHHHHHhcC--CCCCCEEEECCCC-HHHHHHHHHhhcCCCEEEEEcc
Confidence            222110  1111  1469997765343 2468888999999999988764

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.33  E-value=1e-05  Score=59.00  Aligned_cols=104  Identities=19%  Similarity=0.223  Sum_probs=70.9

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHHcC--CCCcEEEEEccccCCCCCCCCCC
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAV---APTGHVYTFDFHEQRAASAREDFERTG--VSSFVTVGVRDIQGQGFPDEFSG  180 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~~  180 (237)
                      ..+..+|+|+|||-|+++..++..+   .+..+|+++|.++...+.+.++....+  ....+.+...+...... .   .
T Consensus        23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~   98 (141)
T PF13679_consen   23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-S---D   98 (141)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-c---C
Confidence            4678899999999999999998833   356899999999999999999887766  43335555555442111 1   4


Q ss_pred             CCCEEEE-e--CCChhchHHHHHhcccCCCEEEEEeCCH
Q 026506          181 LADSIFL-D--LPQPWLAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       181 ~~D~v~~-~--~~~~~~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                      ..++++- +  ..-....++.+.+   ++...++.+||-
T Consensus        99 ~~~~~vgLHaCG~Ls~~~l~~~~~---~~~~~l~~vpCC  134 (141)
T PF13679_consen   99 PPDILVGLHACGDLSDRALRLFIR---PNARFLVLVPCC  134 (141)
T ss_pred             CCeEEEEeecccchHHHHHHHHHH---cCCCEEEEcCCc
Confidence            4566552 2  2222335555554   777777788875

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.32  E-value=7.7e-06  Score=65.98  Aligned_cols=100  Identities=22%  Similarity=0.202  Sum_probs=74.3

Q ss_pred             cHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCC
Q 026506           96 DISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP  175 (237)
Q Consensus        96 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  175 (237)
                      .+..+++.+++.+++.|+|+|+|+|.++..++...   .+++++|+++.+.+..++.+.   ...+++++.+|+.+...+
T Consensus        18 ~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~   91 (262)
T PF00398_consen   18 IADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLY   91 (262)
T ss_dssp             HHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGG
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccH
Confidence            33457888888899999999999999999999884   799999999999999998754   234499999999874443


Q ss_pred             CCCCCCCCEEEEeCCChh--chHHHHHh
Q 026506          176 DEFSGLADSIFLDLPQPW--LAIPSAKK  201 (237)
Q Consensus       176 ~~~~~~~D~v~~~~~~~~--~~l~~~~~  201 (237)
                      .........|+.+.|-..  ..+.++..
T Consensus        92 ~~~~~~~~~vv~NlPy~is~~il~~ll~  119 (262)
T PF00398_consen   92 DLLKNQPLLVVGNLPYNISSPILRKLLE  119 (262)
T ss_dssp             GHCSSSEEEEEEEETGTGHHHHHHHHHH
T ss_pred             HhhcCCceEEEEEecccchHHHHHHHhh
Confidence            211134567788887432  35555555

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=98.31  E-value=8e-06  Score=67.96  Aligned_cols=103  Identities=23%  Similarity=0.256  Sum_probs=66.7

Q ss_pred             hcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCC
Q 026506          103 YLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL  181 (237)
Q Consensus       103 ~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  181 (237)
                      ...+.++++||..|+|. |..+.++++..+  .++++++.+++..+.+++    .+.+..+.....+.. ..........
T Consensus       160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~-~~~~~~~~~~  232 (338)
T cd08254         160 AGEVKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPK-DKKAAGLGGG  232 (338)
T ss_pred             ccCCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHH-HHHHHhcCCC
Confidence            34578889999988876 778888888763  569999999998888765    354321111111110 0000111256


Q ss_pred             CCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          182 ADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       182 ~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +|+++.... ....++.+.+.|+++|+++.++
T Consensus       233 ~D~vid~~g-~~~~~~~~~~~l~~~G~~v~~g  263 (338)
T cd08254         233 FDVIFDFVG-TQPTFEDAQKAVKPGGRIVVVG  263 (338)
T ss_pred             ceEEEECCC-CHHHHHHHHHHhhcCCEEEEEC
Confidence            998765443 2347889999999999998775

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=98.30  E-value=2e-05  Score=65.78  Aligned_cols=180  Identities=21%  Similarity=0.275  Sum_probs=98.7

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceE--EeccCcEE-EEECCCHHHHhhhcCC---
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMV--FSNKGGFV-YLLAPTPELWTLVLSH---   87 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~--~~~~~~~~-~~~~~~~~~~~~~~~~---   87 (237)
                      ..|++||+|......+        |+.|.+|..|...+|.-.. ..+...  ....|.+. +...+...  ...++.   
T Consensus        73 ~~~~~Gd~V~~~~~~~--------~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~g~~~~~v~v~~~~--~~~iP~~~~  141 (339)
T cd08232          73 TGLAPGQRVAVNPSRP--------CGTCDYCRAGRPNLCLNMR-FLGSAMRFPHVQGGFREYLVVDASQ--CVPLPDGLS  141 (339)
T ss_pred             CcCCCCCEEEEccCCc--------CCCChHHhCcCcccCcccc-ceeeccccCCCCCceeeEEEechHH--eEECcCCCC
Confidence            4588999999877666        7888888877766665210 000000  00123333 33333211  111111   


Q ss_pred             --cccccccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 026506           88 --RTQILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT  163 (237)
Q Consensus        88 --~~~~~~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~  163 (237)
                        .+....+...+ ..+..+...++++||..|+|. |..+.++++..+ ..++++++.+++..+.+++    .+.+..+.
T Consensus       142 ~~~aa~~~~~~~a~~~l~~~~~~~~~~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~~s~~~~~~~~~----~g~~~vi~  216 (339)
T cd08232         142 LRRAALAEPLAVALHAVNRAGDLAGKRVLVTGAGPIGALVVAAARRAG-AAEIVATDLADAPLAVARA----MGADETVN  216 (339)
T ss_pred             HHHhhhcchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----cCCCEEEc
Confidence              11111111111 123334434889999998876 777777888763 2378999988888876655    34332122


Q ss_pred             EEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          164 VGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       164 ~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ....+...  ... ..+++|+++...... ..++.+.+.|+++|+++.++
T Consensus       217 ~~~~~~~~--~~~-~~~~vd~vld~~g~~-~~~~~~~~~L~~~G~~v~~g  262 (339)
T cd08232         217 LARDPLAA--YAA-DKGDFDVVFEASGAP-AALASALRVVRPGGTVVQVG  262 (339)
T ss_pred             CCchhhhh--hhc-cCCCccEEEECCCCH-HHHHHHHHHHhcCCEEEEEe
Confidence            11111111  111 114599977654432 36888999999999999775

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.29  E-value=1.1e-06  Score=67.60  Aligned_cols=99  Identities=19%  Similarity=0.163  Sum_probs=66.0

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL  187 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~  187 (237)
                      ...+.||.|+|.|..+..++...  ..+|..+|..+.+++.|++.+... .....++....+.+...+.   ++||+|.+
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~~---~~YDlIW~  128 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPEE---GKYDLIWI  128 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG----T---T-EEEEEE
T ss_pred             CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCCC---CcEeEEEe
Confidence            45699999999999998775443  478999999999999999875431 1233456666554322222   68999987


Q ss_pred             eCC-------ChhchHHHHHhcccCCCEEEEE
Q 026506          188 DLP-------QPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       188 ~~~-------~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                      -.-       +..++|+++...|+|+|.+++=
T Consensus       129 QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvK  160 (218)
T PF05891_consen  129 QWCLGHLTDEDLVAFLKRCKQALKPNGVIVVK  160 (218)
T ss_dssp             ES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hHhhccCCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence            432       2246899999999999999843

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=98.27  E-value=6.8e-05  Score=58.64  Aligned_cols=99  Identities=21%  Similarity=0.250  Sum_probs=61.1

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      -.|.+||-+|-.--.. ++++ ..+...+|+++|+++..++..++.++..|++  ++....|+. .++|+...+.||+++
T Consensus        43 L~gk~il~lGDDDLtS-lA~a-l~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR-~~LP~~~~~~fD~f~  117 (243)
T PF01861_consen   43 LEGKRILFLGDDDLTS-LALA-LTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLR-DPLPEELRGKFDVFF  117 (243)
T ss_dssp             STT-EEEEES-TT-HH-HHHH-HHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TT-S---TTTSS-BSEEE
T ss_pred             ccCCEEEEEcCCcHHH-HHHH-hhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEeccc-ccCCHHHhcCCCEEE
Confidence            4588999998665322 2222 2234589999999999999999999999975  999999998 677776678999999


Q ss_pred             EeCCChh----chHHHHHhcccCCC-EEE
Q 026506          187 LDLPQPW----LAIPSAKKMLKQDG-ILC  210 (237)
Q Consensus       187 ~~~~~~~----~~l~~~~~~L~~gG-~l~  210 (237)
                      .|+|...    .++.+....||..| ..+
T Consensus       118 TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy  146 (243)
T PF01861_consen  118 TDPPYTPEGLKLFLSRGIEALKGEGCAGY  146 (243)
T ss_dssp             E---SSHHHHHHHHHHHHHTB-STT-EEE
T ss_pred             eCCCCCHHHHHHHHHHHHHHhCCCCceEE
Confidence            9998664    46888899998666 443

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.26  E-value=5.9e-06  Score=66.26  Aligned_cols=99  Identities=18%  Similarity=0.160  Sum_probs=68.8

Q ss_pred             CCEEEEEccCccH----HHHHHHHHhC----CCcEEEEEeCCHHHHHHHHHHHHH-----cCC-----------------
Q 026506          109 GCLVLESGTGSGS----LTTSLARAVA----PTGHVYTFDFHEQRAASAREDFER-----TGV-----------------  158 (237)
Q Consensus       109 ~~~vldiG~G~G~----~~~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~-----~~~-----------------  158 (237)
                      .-+|+-.||++|-    +++.+.+..+    ...+|+|+|+|...++.|+.-.-.     .++                 
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            5699999999993    3444445543    247899999999999998762100     011                 


Q ss_pred             ------CCcEEEEEccccCCCCCCCCCCCCCEEEE-------eCCChhchHHHHHhcccCCCEEE
Q 026506          159 ------SSFVTVGVRDIQGQGFPDEFSGLADSIFL-------DLPQPWLAIPSAKKMLKQDGILC  210 (237)
Q Consensus       159 ------~~~i~~~~~d~~~~~~~~~~~~~~D~v~~-------~~~~~~~~l~~~~~~L~~gG~l~  210 (237)
                            ...+.+...|.....+..   +.||+||+       |.+....+++..+..|+|||.|+
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~~~---~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~Lf  238 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSPFL---GKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLF  238 (268)
T ss_pred             EEChHHhcccEEeecCCCCCcccc---CCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEE
Confidence                  123556667776544222   77999986       34455578999999999999998

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=98.25  E-value=1.9e-05  Score=67.06  Aligned_cols=185  Identities=18%  Similarity=0.151  Sum_probs=98.7

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCC-----CCce-EEeccCcEE-EEECCCHHHHhhhcC
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKP-----FGSM-VFSNKGGFV-YLLAPTPELWTLVLS   86 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~g~~-~~~~~~~~~-~~~~~~~~~~~~~~~   86 (237)
                      ..+++||||+.....+        ||.|..|+.|....|......     ++.. .....|.+. |...|..+.+...++
T Consensus        73 ~~~~~Gd~V~~~~~~~--------~g~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~~~lP  144 (375)
T cd08282          73 ESLKVGDRVVVPFNVA--------CGRCRNCKRGLTGVCLTVNPGRAGGAYGYVDMGPYGGGQAEYLRVPYADFNLLKLP  144 (375)
T ss_pred             CcCCCCCEEEEeCCCC--------CCCCHHHHCcCcccCCCCCcccccccccccccCCCCCeeeeEEEeecccCcEEECC
Confidence            4589999999887666        788888887766555421100     0100 000112222 233332110111111


Q ss_pred             C----c-----ccccccccHHH-HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q 026506           87 H----R-----TQILYIADISF-VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER  155 (237)
Q Consensus        87 ~----~-----~~~~~~~~~~~-~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~  155 (237)
                      .    .     .....+...+. .+......++++||..|+|. |..+.++++..+ ..+++++|.+++..+.+++    
T Consensus       145 ~~~~~~~~~~~a~~~~~~~ta~~a~~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G-~~~vi~~~~~~~~~~~~~~----  219 (375)
T cd08282         145 DRDGAKEKDDYLMLSDIFPTGWHGLELAGVQPGDTVAVFGAGPVGLMAAYSAILRG-ASRVYVVDHVPERLDLAES----  219 (375)
T ss_pred             CCCChhhhhheeeecchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----
Confidence            1    0     11111111111 23455678899999998887 777778887763 2478889999988887775    


Q ss_pred             cCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCCh----------hchHHHHHhcccCCCEEEEEe
Q 026506          156 TGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP----------WLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       156 ~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~----------~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .+... +.....+..+ .+.....+.+|+++......          ...+..+.+.|+++|+++.++
T Consensus       220 ~g~~~-v~~~~~~~~~-~i~~~~~~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g  285 (375)
T cd08282         220 IGAIP-IDFSDGDPVE-QILGLEPGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVG  285 (375)
T ss_pred             cCCeE-eccCcccHHH-HHHHhhCCCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEe
Confidence            34311 2111111111 01111114689977654322          125888999999999997554

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=98.24  E-value=1.7e-05  Score=65.96  Aligned_cols=107  Identities=20%  Similarity=0.147  Sum_probs=72.6

Q ss_pred             HhcCCCCCCEEEEEccCc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          102 MYLELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~G~--G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ...+.++|++||..|+..  |.+++++++.++.  .++++-.+++..+.+++    .|.+..+++...|+.+.......+
T Consensus       136 ~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~--~~v~~~~s~~k~~~~~~----lGAd~vi~y~~~~~~~~v~~~t~g  209 (326)
T COG0604         136 DRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA--TVVAVVSSSEKLELLKE----LGADHVINYREEDFVEQVRELTGG  209 (326)
T ss_pred             HhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC--cEEEEecCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHcCC
Confidence            345688899999998544  7888999999743  55566666666666665    577665666666665421111112


Q ss_pred             CCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCCH
Q 026506          180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       180 ~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                      .++|+|+-.... . .+.+..+.|+++|+++.+....
T Consensus       210 ~gvDvv~D~vG~-~-~~~~~l~~l~~~G~lv~ig~~~  244 (326)
T COG0604         210 KGVDVVLDTVGG-D-TFAASLAALAPGGRLVSIGALS  244 (326)
T ss_pred             CCceEEEECCCH-H-HHHHHHHHhccCCEEEEEecCC
Confidence            369997654443 2 6788999999999999886543

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.23  E-value=2.8e-05  Score=63.11  Aligned_cols=116  Identities=15%  Similarity=0.029  Sum_probs=74.0

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      ....+|||+|+|+|..+.++...++...+++.+|.|+.+++.++..+....... ......+......+.   ...|+|+
T Consensus        32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~---~~~DLvi  107 (274)
T PF09243_consen   32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNR-NAEWRRVLYRDFLPF---PPDDLVI  107 (274)
T ss_pred             CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccc-cchhhhhhhcccccC---CCCcEEE
Confidence            345799999999998777666666545789999999999999988765432111 111111111111111   2349987


Q ss_pred             Ee-----CCC--hhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh
Q 026506          187 LD-----LPQ--PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL  228 (237)
Q Consensus       187 ~~-----~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~  228 (237)
                      ..     .+.  ..++++++++.+++  .|+++.|.....-+.+..+|+
T Consensus       108 ~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~  154 (274)
T PF09243_consen  108 ASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARD  154 (274)
T ss_pred             EehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHH
Confidence            53     222  23466667666665  888898888777666666666

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=98.22  E-value=1.7e-05  Score=66.15  Aligned_cols=104  Identities=21%  Similarity=0.258  Sum_probs=67.4

Q ss_pred             HhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC-CCC
Q 026506          102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-EFS  179 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~  179 (237)
                      ....+.++++||..|+|. |..++++++..+  .+++++..+++..+.+++    .+.+..+.....++.+ .+.. ..+
T Consensus       153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g--~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~-~l~~~~~~  225 (337)
T cd08261         153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKARG--ARVIVVDIDDERLEFARE----LGADDTINVGDEDVAA-RLRELTDG  225 (337)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHH-HHHHHhCC
Confidence            455678899999998776 777788888863  678888888888877755    3433322222222111 1100 011


Q ss_pred             CCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       180 ~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ..+|+++..... ...+..+.+.|+++|+++.++
T Consensus       226 ~~vd~vld~~g~-~~~~~~~~~~l~~~G~~i~~g  258 (337)
T cd08261         226 EGADVVIDATGN-PASMEEAVELVAHGGRVVLVG  258 (337)
T ss_pred             CCCCEEEECCCC-HHHHHHHHHHHhcCCEEEEEc
Confidence            459997765433 236788899999999998765

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=98.22  E-value=8.4e-06  Score=65.06  Aligned_cols=128  Identities=18%  Similarity=0.189  Sum_probs=98.7

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEccccC--CCCCCCCCC
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT--GV-SSFVTVGVRDIQG--QGFPDEFSG  180 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~--~~~~~~~~~  180 (237)
                      ....+++|.+|.|-|+.....+.+ ..-.++..+|++...++..++.+...  |. ..++.+..+|...  .....   +
T Consensus       119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~---~  194 (337)
T KOG1562|consen  119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKE---N  194 (337)
T ss_pred             CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhcc---C
Confidence            345689999999999998887776 34478999999999999999887653  32 3458888888765  22223   7


Q ss_pred             CCCEEEEeCCChh---------chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh----cCccccccC
Q 026506          181 LADSIFLDLPQPW---------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL----NFTGKESCI  237 (237)
Q Consensus       181 ~~D~v~~~~~~~~---------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~----~f~~v~~~~  237 (237)
                      .||+|+.+..++.         .+++.+.+.||++|+++..+-|.....+..+.+++    .|..++.+|
T Consensus       195 ~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~~~~~~f~~t~ya~  264 (337)
T KOG1562|consen  195 PFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRSFCYVIFDLTAYAI  264 (337)
T ss_pred             CceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHHHhHHHhcCccceee
Confidence            8999998876552         47888999999999999999888887788777777    277766543

>cd05281 TDH Threonine dehydrogenase

Probab=98.22  E-value=2.3e-05  Score=65.52  Aligned_cols=178  Identities=20%  Similarity=0.220  Sum_probs=95.2

Q ss_pred             CCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc-----
Q 026506           15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR-----   88 (237)
Q Consensus        15 ~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----   88 (237)
                      .+++||+|......+        ||.|+.|+.|.-+.|+-.+. .|   ....|.+. +...+...  ...++..     
T Consensus        78 ~~~~Gd~V~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~---~~~~g~~~~~v~v~~~~--~~~lP~~~~~~~  143 (341)
T cd05281          78 RVKVGDYVSAETHIV--------CGKCYQCRTGNYHVCQNTKI-LG---VDTDGCFAEYVVVPEEN--LWKNDKDIPPEI  143 (341)
T ss_pred             CCCCCCEEEECCccC--------CCCChHHHCcCcccCcccce-Ee---ccCCCcceEEEEechHH--cEECcCCCCHHH
Confidence            478999998865555        78888887666555531110 00   01122222 33333211  1111211     


Q ss_pred             ccccccccHHHHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q 026506           89 TQILYIADISFVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR  167 (237)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~  167 (237)
                      .....+...+.........++.+||..|+|. |..+.++++..+ ..++++++.+++..+.+++    .+.+..+.....
T Consensus       144 a~~~~~~~~a~~~~~~~~~~g~~vlV~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~  218 (341)
T cd05281         144 ASIQEPLGNAVHTVLAGDVSGKSVLITGCGPIGLMAIAVAKAAG-ASLVIASDPNPYRLELAKK----MGADVVINPREE  218 (341)
T ss_pred             hhhhhHHHHHHHHHHhcCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----hCcceeeCcccc
Confidence            1111111111111113456889999988776 777777888763 2368888878877776665    354321222222


Q ss_pred             cccC-CCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          168 DIQG-QGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       168 d~~~-~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ++.. ....  .++++|+++...... .....+.+.|+++|+++.++.
T Consensus       219 ~~~~~~~~~--~~~~vd~vld~~g~~-~~~~~~~~~l~~~G~~v~~g~  263 (341)
T cd05281         219 DVVEVKSVT--DGTGVDVVLEMSGNP-KAIEQGLKALTPGGRVSILGL  263 (341)
T ss_pred             cHHHHHHHc--CCCCCCEEEECCCCH-HHHHHHHHHhccCCEEEEEcc
Confidence            2210 0011  114699977655433 367888999999999987753

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=98.21  E-value=1.9e-05  Score=67.51  Aligned_cols=179  Identities=19%  Similarity=0.250  Sum_probs=97.4

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc----
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR----   88 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----   88 (237)
                      ..+++||+|+......        |+.|.+|..|...+|.. ...+|..  ...|++. |...|...  ...++..    
T Consensus       101 ~~~~~Gd~V~~~~~~~--------~~~~~~c~~~~~~~~~~-~~~~g~~--~~~g~~a~y~~v~~~~--l~~iP~~l~~~  167 (393)
T cd08246         101 KNWKVGDEVVVHCSVW--------DGNDPERAGGDPMFDPS-QRIWGYE--TNYGSFAQFALVQATQ--LMPKPKHLSWE  167 (393)
T ss_pred             CcCCCCCEEEEecccc--------ccCcccccccccccccc-ccccccc--CCCCcceeEEEechHH--eEECCCCCCHH
Confidence            3588999999876555        67777787776666642 1112211  1224443 33333221  1111111    


Q ss_pred             --ccccccccHHH-HHH-h--cCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC
Q 026506           89 --TQILYIADISF-VIM-Y--LELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS  160 (237)
Q Consensus        89 --~~~~~~~~~~~-~~~-~--~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~  160 (237)
                        .....+...+. .+. .  ..+.++++||..|+ |+ |..+..+++..+  .++++++.+++..+.+++    .|...
T Consensus       168 ~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G--~~vv~~~~s~~~~~~~~~----~G~~~  241 (393)
T cd08246         168 EAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAG--ANPVAVVSSEEKAEYCRA----LGAEG  241 (393)
T ss_pred             HHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHH----cCCCE
Confidence              01111111111 111 1  45788999999997 55 777777887763  567788888998888876    35332


Q ss_pred             cEEEEEccc---------------------cCCCCCCCCC-C-CCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          161 FVTVGVRDI---------------------QGQGFPDEFS-G-LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       161 ~i~~~~~d~---------------------~~~~~~~~~~-~-~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .++....+.                     ....+..... . ++|+++.... . ..+..+.+.++++|+++.++
T Consensus       242 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g-~-~~~~~~~~~l~~~G~~v~~g  315 (393)
T cd08246         242 VINRRDFDHWGVLPDVNSEAYTAWTKEARRFGKAIWDILGGREDPDIVFEHPG-R-ATFPTSVFVCDRGGMVVICA  315 (393)
T ss_pred             EEcccccccccccccccchhhhhhhhccchHHHHHHHHhCCCCCCeEEEECCc-h-HhHHHHHHHhccCCEEEEEc
Confidence            122110000                     0000000011 2 6898774433 3 46888999999999999775

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=98.21  E-value=2.3e-05  Score=65.56  Aligned_cols=184  Identities=20%  Similarity=0.177  Sum_probs=96.4

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCce-EEeccCcEE-EEECCCHHHHhhhcCC----
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSM-VFSNKGGFV-YLLAPTPELWTLVLSH----   87 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~-~~~~~~~~~-~~~~~~~~~~~~~~~~----   87 (237)
                      ..+++||+|......+        |+.|.+|+.|....|.-.+. +|.. .....|.+. +...+....+....+.    
T Consensus        73 ~~~~~Gd~V~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~v~~~~~~~~~~p~~l~~  143 (344)
T cd08284          73 RTLKVGDRVVSPFTIA--------CGECFYCRRGQSGRCAKGGL-FGYAGSPNLDGAQAEYVRVPFADGTLLKLPDGLSD  143 (344)
T ss_pred             cccCCCCEEEEcccCC--------CCCChHHhCcCcccCCCCcc-ccccccCCCCCceeEEEEcccccCceEECCCCCCH
Confidence            3588999999877666        78888887776555532111 1000 000112222 2222211001011110    


Q ss_pred             --cccccccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 026506           88 --RTQILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT  163 (237)
Q Consensus        88 --~~~~~~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~  163 (237)
                        ..........+ ..+......++.+||..|+|. |..+..+++..+ ..++++++.+++..+.+++    .|... +.
T Consensus       144 ~~a~~l~~~~~ta~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~-~~  217 (344)
T cd08284         144 EAALLLGDILPTGYFGAKRAQVRPGDTVAVIGCGPVGLCAVLSAQVLG-AARVFAVDPVPERLERAAA----LGAEP-IN  217 (344)
T ss_pred             HHhhhhcCchHHHHhhhHhcCCccCCEEEEECCcHHHHHHHHHHHHcC-CceEEEEcCCHHHHHHHHH----hCCeE-Ee
Confidence              00111111111 123345677899999998776 667777777753 2478888888877776655    35321 21


Q ss_pred             EEEccccCCCCCC-CCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          164 VGVRDIQGQGFPD-EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       164 ~~~~d~~~~~~~~-~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ....++.. .+.. ..+.++|+++..... ...+..+.+.|+++|+++.++.
T Consensus       218 ~~~~~~~~-~l~~~~~~~~~dvvid~~~~-~~~~~~~~~~l~~~g~~v~~g~  267 (344)
T cd08284         218 FEDAEPVE-RVREATEGRGADVVLEAVGG-AAALDLAFDLVRPGGVISSVGV  267 (344)
T ss_pred             cCCcCHHH-HHHHHhCCCCCCEEEECCCC-HHHHHHHHHhcccCCEEEEECc
Confidence            11111111 0100 111469987755443 3478889999999999987753

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=98.21  E-value=9.1e-06  Score=67.83  Aligned_cols=178  Identities=22%  Similarity=0.275  Sum_probs=97.2

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc----
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR----   88 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----   88 (237)
                      ..+++||||+......        |+.|.+|+.|..++++... ..|.   ...|.+. +...+..  +....+..    
T Consensus        77 ~~~~~Gd~V~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~---~~~g~~~~~~~v~~~--~~~~~P~~ls~~  142 (340)
T cd05284          77 DGLKEGDPVVVHPPWG--------CGTCRYCRRGEENYCENAR-FPGI---GTDGGFAEYLLVPSR--RLVKLPRGLDPV  142 (340)
T ss_pred             CcCcCCCEEEEcCCCC--------CCCChHHhCcCcccCCCCc-ccCc---cCCCcceeeEEecHH--HeEECCCCCCHH
Confidence            4588999999877555        7778888888766654211 1111   1122222 2222211  11111111    


Q ss_pred             -cccccc-ccHHH-HHHhc--CCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcE
Q 026506           89 -TQILYI-ADISF-VIMYL--ELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFV  162 (237)
Q Consensus        89 -~~~~~~-~~~~~-~~~~~--~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i  162 (237)
                       ...+.. ...+. .+...  ...++++||..|+|+ |..+.++++..+. .++++++.+++..+.+++    .+.+..+
T Consensus       143 ~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~~~  217 (340)
T cd05284         143 EAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTP-ATVIAVDRSEEALKLAER----LGADHVL  217 (340)
T ss_pred             HhhhhcchHHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCC-CcEEEEeCCHHHHHHHHH----hCCcEEE
Confidence             111111 11111 22222  467789999999877 6667777777642 678888888887777654    4543211


Q ss_pred             EEEEccccCCCCCC-CCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          163 TVGVRDIQGQGFPD-EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       163 ~~~~~d~~~~~~~~-~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ... .++. ..+.. ..+..+|+++...+.. ..++.+.+.|+++|+++.++
T Consensus       218 ~~~-~~~~-~~i~~~~~~~~~dvvld~~g~~-~~~~~~~~~l~~~g~~i~~g  266 (340)
T cd05284         218 NAS-DDVV-EEVRELTGGRGADAVIDFVGSD-ETLALAAKLLAKGGRYVIVG  266 (340)
T ss_pred             cCC-ccHH-HHHHHHhCCCCCCEEEEcCCCH-HHHHHHHHHhhcCCEEEEEc
Confidence            111 1111 11110 0114699987665543 36888899999999998775

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=98.20  E-value=1.3e-05  Score=67.11  Aligned_cols=180  Identities=19%  Similarity=0.195  Sum_probs=100.0

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCC-----
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSH-----   87 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----   87 (237)
                      ..+++||+|....-.+        ||+|.+|..|..+.|+-. ...+.   ...|.+. +...+....+...++.     
T Consensus        74 ~~~~~Gd~V~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~---~~~g~~~~~~~v~~~~~~~~~iP~~~~~~  141 (345)
T cd08260          74 SRWRVGDRVTVPFVLG--------CGTCPYCRAGDSNVCEHQ-VQPGF---THPGSFAEYVAVPRADVNLVRLPDDVDFV  141 (345)
T ss_pred             ccCCCCCEEEECCCCC--------CCCCccccCcCcccCCCC-ccccc---CCCCcceeEEEcccccCceEECCCCCCHH
Confidence            4589999998854334        888999988887777631 11111   0112222 2222221001111111     


Q ss_pred             -cccccccccHHH--HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 026506           88 -RTQILYIADISF--VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT  163 (237)
Q Consensus        88 -~~~~~~~~~~~~--~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~  163 (237)
                       ......+...+.  +.......++.+|+..|+|. |..+.++++..  ..++++++.+++..+.+++    .|++..+.
T Consensus       142 ~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~  215 (345)
T cd08260         142 TAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASAL--GARVIAVDIDDDKLELARE----LGAVATVN  215 (345)
T ss_pred             HhhhhccchHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHH----hCCCEEEc
Confidence             111111111111  22344577889999999876 77777778876  3578999888888887754    45533222


Q ss_pred             EEE-ccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          164 VGV-RDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       164 ~~~-~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ... .+... .+.....+.+|+++..... ...+....+.|+++|+++.++
T Consensus       216 ~~~~~~~~~-~~~~~~~~~~d~vi~~~g~-~~~~~~~~~~l~~~g~~i~~g  264 (345)
T cd08260         216 ASEVEDVAA-AVRDLTGGGAHVSVDALGI-PETCRNSVASLRKRGRHVQVG  264 (345)
T ss_pred             cccchhHHH-HHHHHhCCCCCEEEEcCCC-HHHHHHHHHHhhcCCEEEEeC
Confidence            222 22211 0110111369997755443 336788899999999988765

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.20  E-value=1.5e-06  Score=66.73  Aligned_cols=100  Identities=19%  Similarity=0.224  Sum_probs=61.1

Q ss_pred             CCCEEEEEccCccH----HHHHHHHHhC---C-CcEEEEEeCCHHHHHHHHHHH--------------HHc-----C---
Q 026506          108 PGCLVLESGTGSGS----LTTSLARAVA---P-TGHVYTFDFHEQRAASAREDF--------------ERT-----G---  157 (237)
Q Consensus       108 ~~~~vldiG~G~G~----~~~~~~~~~~---~-~~~v~~vD~~~~~~~~a~~~~--------------~~~-----~---  157 (237)
                      ..-+|+..||++|.    +++.+.....   + ..+++|+|+|+.+++.|++-.              .+.     +   
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            45799999999995    2333333211   1 358999999999999987731              100     1   


Q ss_pred             -----CCCcEEEEEccccCCCCCCCCCCCCCEEEEe-------CCChhchHHHHHhcccCCCEEE
Q 026506          158 -----VSSFVTVGVRDIQGQGFPDEFSGLADSIFLD-------LPQPWLAIPSAKKMLKQDGILC  210 (237)
Q Consensus       158 -----~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~-------~~~~~~~l~~~~~~L~~gG~l~  210 (237)
                           +.+.+.+...|..+...+.   +.||+|++-       ......+++.+.+.|+|||.|+
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~---~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~  172 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPF---GRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLF  172 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S---------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEE
T ss_pred             eEChHHcCceEEEecccCCCCccc---CCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEE
Confidence                 0135788888888512222   789999873       2233568999999999999998

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK10742 putative methyltransferase; Provisional

Probab=98.19  E-value=1.2e-05  Score=63.38  Aligned_cols=88  Identities=17%  Similarity=0.160  Sum_probs=68.7

Q ss_pred             HHHhcCCCCCC--EEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc------C--CCCcEEEEEccc
Q 026506          100 VIMYLELVPGC--LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT------G--VSSFVTVGVRDI  169 (237)
Q Consensus       100 ~~~~~~~~~~~--~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~--~~~~i~~~~~d~  169 (237)
                      +++..++++|.  +|||+.+|+|..+..++..   .++|+++|.++......++++.+.      +  +..++++..+|.
T Consensus        78 l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da  154 (250)
T PRK10742         78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (250)
T ss_pred             HHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence            66777888888  9999999999999988877   356999999999999999988764      2  124588888888


Q ss_pred             cCCCCCCCCCCCCCEEEEeCCCh
Q 026506          170 QGQGFPDEFSGLADSIFLDLPQP  192 (237)
Q Consensus       170 ~~~~~~~~~~~~~D~v~~~~~~~  192 (237)
                      .+. +.. ....||+|++|++-+
T Consensus       155 ~~~-L~~-~~~~fDVVYlDPMfp  175 (250)
T PRK10742        155 LTA-LTD-ITPRPQVVYLDPMFP  175 (250)
T ss_pred             HHH-Hhh-CCCCCcEEEECCCCC
Confidence            751 111 224799999998744

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.18  E-value=8.7e-05  Score=61.40  Aligned_cols=169  Identities=18%  Similarity=0.179  Sum_probs=95.8

Q ss_pred             CCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc-----c
Q 026506           16 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR-----T   89 (237)
Q Consensus        16 ~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~   89 (237)
                      +++||||......+        |+.|.+|..|....+.  +.. ...+....|.+. +...+..  +...++..     .
T Consensus        69 ~~~G~~V~~~~~~~--------~~~~~~~~~~~~~~~~--~~~-~~~~~~~~g~~~~~~~v~~~--~~~~lP~~~~~~~a  135 (319)
T cd08242          69 ELVGKRVVGEINIA--------CGRCEYCRRGLYTHCP--NRT-VLGIVDRDGAFAEYLTLPLE--NLHVVPDLVPDEQA  135 (319)
T ss_pred             CCCCCeEEECCCcC--------CCCChhhhCcCcccCC--CCc-ccCccCCCCceEEEEEechH--HeEECcCCCCHHHh
Confidence            68999998876555        7777788777654433  110 000001123332 3333321  11111111     1


Q ss_pred             cccccccHHH-HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q 026506           90 QILYIADISF-VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR  167 (237)
Q Consensus        90 ~~~~~~~~~~-~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~  167 (237)
                      ..+.+..... ++...+..++.+||..|+|. |..+.++++..+  .++++++.+++..+.+++    .|....+..   
T Consensus       136 a~~~~~~~~~~~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G--~~vi~~~~~~~~~~~~~~----~g~~~~~~~---  206 (319)
T cd08242         136 VFAEPLAAALEILEQVPITPGDKVAVLGDGKLGLLIAQVLALTG--PDVVLVGRHSEKLALARR----LGVETVLPD---  206 (319)
T ss_pred             hhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH----cCCcEEeCc---
Confidence            1111111111 33455678899999998877 777777787763  468999999998888876    354321111   


Q ss_pred             cccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          168 DIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       168 d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                        ... ...   ..+|+++..... ...++.+.+.|+++|+++...
T Consensus       207 --~~~-~~~---~~~d~vid~~g~-~~~~~~~~~~l~~~g~~v~~~  245 (319)
T cd08242         207 --EAE-SEG---GGFDVVVEATGS-PSGLELALRLVRPRGTVVLKS  245 (319)
T ss_pred             --ccc-ccC---CCCCEEEECCCC-hHHHHHHHHHhhcCCEEEEEc
Confidence              111 121   569997755433 336788899999999998643

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=98.18  E-value=1.2e-05  Score=60.67  Aligned_cols=118  Identities=17%  Similarity=0.261  Sum_probs=80.9

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC-------CCCcEEEEEccccCCCCCCC-CC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG-------VSSFVTVGVRDIQGQGFPDE-FS  179 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-------~~~~i~~~~~d~~~~~~~~~-~~  179 (237)
                      ..-.+.|||||-|++.+.++... |+..+.+.|+.....+..++++..+.       ..+ +.+...+... -++.. ..
T Consensus        60 ~kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~n-i~vlr~namk-~lpn~f~k  136 (249)
T KOG3115|consen   60 KKVEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPN-ISVLRTNAMK-FLPNFFEK  136 (249)
T ss_pred             ccceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhcccccccccc-ceeeeccchh-hccchhhh
Confidence            34578999999999999999986 67889999998888888887776554       333 5566555543 11211 11


Q ss_pred             CCCCEEEEeCCChh-------------chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh
Q 026506          180 GLADSIFLDLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL  228 (237)
Q Consensus       180 ~~~D~v~~~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~  228 (237)
                      ++.+-.|...|++.             ..+.+..-+|++||.++.+....+.-..+.+.+.+
T Consensus       137 gqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e~  198 (249)
T KOG3115|consen  137 GQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKHLEE  198 (249)
T ss_pred             cccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHHh
Confidence            44455555444431             35777788999999999777766655555556655

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=98.17  E-value=1.3e-05  Score=67.77  Aligned_cols=103  Identities=21%  Similarity=0.257  Sum_probs=65.0

Q ss_pred             CCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCC
Q 026506          105 ELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLAD  183 (237)
Q Consensus       105 ~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D  183 (237)
                      .+.++.+||..|+|. |..+.++++..+ ...+++++.+++..+.+++    .+....+.....+..........+..+|
T Consensus       184 ~~~~g~~VlI~g~g~vG~~~~~lak~~G-~~~vi~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~~~~~~d  258 (367)
T cd08263         184 DVRPGETVAVIGVGGVGSSAIQLAKAFG-ASPIIAVDVRDEKLAKAKE----LGATHTVNAAKEDAVAAIREITGGRGVD  258 (367)
T ss_pred             cCCCCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCceEecCCcccHHHHHHHHhCCCCCC
Confidence            457889999888776 777777887763 2448889888888877754    3543212222112110000001114699


Q ss_pred             EEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          184 SIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       184 ~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +|+...+.. ..+..+.+.|+++|+++.++
T Consensus       259 ~vld~vg~~-~~~~~~~~~l~~~G~~v~~g  287 (367)
T cd08263         259 VVVEALGKP-ETFKLALDVVRDGGRAVVVG  287 (367)
T ss_pred             EEEEeCCCH-HHHHHHHHHHhcCCEEEEEc
Confidence            988655543 36788899999999998775

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=98.16  E-value=2.2e-05  Score=65.60  Aligned_cols=181  Identities=19%  Similarity=0.121  Sum_probs=96.7

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc----
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR----   88 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----   88 (237)
                      ..+++||+|.......        |+.|..|..+..++|.-.   .+.. ....|.+. +...|..  +...++..    
T Consensus        77 ~~~~~Gd~V~~~~~~~--------~~~~~~~~~~~~~~~~~~---~~~~-~~~~g~~~~~~~v~~~--~~~~iP~~l~~~  142 (341)
T PRK05396         77 TGFKVGDRVSGEGHIV--------CGHCRNCRAGRRHLCRNT---KGVG-VNRPGAFAEYLVIPAF--NVWKIPDDIPDD  142 (341)
T ss_pred             CcCCCCCEEEECCCCC--------CCCChhhhCcChhhCCCc---ceee-ecCCCcceeeEEechH--HeEECcCCCCHH
Confidence            4578999998876555        677778877776666421   1110 11123332 3333321  11111111    


Q ss_pred             -ccccccccHHHHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 026506           89 -TQILYIADISFVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV  166 (237)
Q Consensus        89 -~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~  166 (237)
                       ...+.+.............++++|+..|+|. |..+.++++..+ ..++++++.+++..+.+++    .|.+..+....
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~g~~vlV~~~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----lg~~~~~~~~~  217 (341)
T PRK05396        143 LAAIFDPFGNAVHTALSFDLVGEDVLITGAGPIGIMAAAVAKHVG-ARHVVITDVNEYRLELARK----MGATRAVNVAK  217 (341)
T ss_pred             HhHhhhHHHHHHHHHHcCCCCCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----hCCcEEecCcc
Confidence             1111111111111112235788999988877 777778888763 2468888888887777665    35433222222


Q ss_pred             ccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          167 RDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       167 ~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .++.+.......+..+|+|+..... ...++.+.+.|+++|.++.++.
T Consensus       218 ~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~~l~~~G~~v~~g~  264 (341)
T PRK05396        218 EDLRDVMAELGMTEGFDVGLEMSGA-PSAFRQMLDNMNHGGRIAMLGI  264 (341)
T ss_pred             ccHHHHHHHhcCCCCCCEEEECCCC-HHHHHHHHHHHhcCCEEEEEec
Confidence            2221100000112568997754543 3378889999999999998864

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.16  E-value=6.7e-06  Score=61.81  Aligned_cols=101  Identities=26%  Similarity=0.263  Sum_probs=73.3

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      .-.|.+|||+|+|+|..++..+..  ++..|++.|+.|...+.++-|.+.+++.  +.+...|...   +.   ..||++
T Consensus        77 tVrgkrVLd~gagsgLvaIAaa~a--GA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g---~~---~~~Dl~  146 (218)
T COG3897          77 TVRGKRVLDLGAGSGLVAIAAARA--GAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG---SP---PAFDLL  146 (218)
T ss_pred             ccccceeeecccccChHHHHHHHh--hhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC---CC---cceeEE
Confidence            446899999999999998776665  4678999999999999999999988853  7788888763   33   679998


Q ss_pred             EEe-----CCChhchHHHHHhcccCCCE-EEEEeCCHH
Q 026506          186 FLD-----LPQPWLAIPSAKKMLKQDGI-LCSFSPCIE  217 (237)
Q Consensus       186 ~~~-----~~~~~~~l~~~~~~L~~gG~-l~~~~~~~~  217 (237)
                      +..     ......++. ..+.++..|. +++..|...
T Consensus       147 LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~  183 (218)
T COG3897         147 LAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGRA  183 (218)
T ss_pred             EeeceecCchHHHHHHH-HHHHHHhCCCEEEEeCCCCC
Confidence            752     233334555 6666666664 555555543

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=98.12  E-value=1.9e-05  Score=66.23  Aligned_cols=101  Identities=20%  Similarity=0.254  Sum_probs=64.4

Q ss_pred             CCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          106 LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       106 ~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      ..++++||..|+|+ |..+.++++..+ ..++++++.+++..+.+++    .|.+..+.....+..+ .+.....+++|+
T Consensus       173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~-~~~~~~~~~~d~  246 (350)
T cd08240         173 LVADEPVVIIGAGGLGLMALALLKALG-PANIIVVDIDEAKLEAAKA----AGADVVVNGSDPDAAK-RIIKAAGGGVDA  246 (350)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCcEEecCCCccHHH-HHHHHhCCCCcE
Confidence            34788999998877 777788888864 3478899988888887755    3542211111111110 011111136899


Q ss_pred             EEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          185 IFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       185 v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ++...+.. ..+..+.+.|+++|+++.++
T Consensus       247 vid~~g~~-~~~~~~~~~l~~~g~~v~~g  274 (350)
T cd08240         247 VIDFVNNS-ATASLAFDILAKGGKLVLVG  274 (350)
T ss_pred             EEECCCCH-HHHHHHHHHhhcCCeEEEEC
Confidence            77544433 47899999999999998764

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=98.11  E-value=1.3e-05  Score=67.66  Aligned_cols=109  Identities=21%  Similarity=0.180  Sum_probs=80.2

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS-FVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      .+-++||.=+|+|.=++..+..+.+..+|++.|+|+++++.+++|++.+++.. ++++...|+.. .+. .....||+|=
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~-ll~-~~~~~fD~ID  126 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANV-LLY-SRQERFDVID  126 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHH-HHC-HSTT-EEEEE
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHH-Hhh-hccccCCEEE
Confidence            45699999999999999998887666799999999999999999999999887 68898888864 221 1127899998


Q ss_pred             EeC-CChhchHHHHHhcccCCCEEEEEeCCHHH
Q 026506          187 LDL-PQPWLAIPSAKKMLKQDGILCSFSPCIEQ  218 (237)
Q Consensus       187 ~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  218 (237)
                      +|+ +.+..++..+.+.++.||.|.+-++-...
T Consensus       127 lDPfGSp~pfldsA~~~v~~gGll~vTaTD~a~  159 (377)
T PF02005_consen  127 LDPFGSPAPFLDSALQAVKDGGLLCVTATDTAV  159 (377)
T ss_dssp             E--SS--HHHHHHHHHHEEEEEEEEEEE--HHH
T ss_pred             eCCCCCccHhHHHHHHHhhcCCEEEEecccccc
Confidence            887 45557999999999999999977765433

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=98.10  E-value=4.7e-05  Score=66.73  Aligned_cols=127  Identities=15%  Similarity=0.168  Sum_probs=94.1

Q ss_pred             ccccccccHHH-HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE
Q 026506           89 TQILYIADISF-VIMYLELVPGCLVLESGTGSGSLTTSLARAVAP---TGHVYTFDFHEQRAASAREDFERTGVSSFVTV  164 (237)
Q Consensus        89 ~~~~~~~~~~~-~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~  164 (237)
                      .+...|..+.. +++.+.+.+..+|.|..||+|++.......+..   ...+++.|+++.....++.++-.+++...+..
T Consensus       166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i  245 (489)
T COG0286         166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI  245 (489)
T ss_pred             CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccc
Confidence            55666777664 677788888889999999999998888777642   26789999999999999999988887633566


Q ss_pred             EEccccCCCCCC--CCCCCCCEEEEeCCCh------------------------------hchHHHHHhcccCCCEEEEE
Q 026506          165 GVRDIQGQGFPD--EFSGLADSIFLDLPQP------------------------------WLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       165 ~~~d~~~~~~~~--~~~~~~D~v~~~~~~~------------------------------~~~l~~~~~~L~~gG~l~~~  212 (237)
                      ..+|....+...  ...+.||.|+.++|-.                              +..++.+...|+|||+..++
T Consensus       246 ~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv  325 (489)
T COG0286         246 RHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV  325 (489)
T ss_pred             cccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence            666665433321  1225699988876621                              34688899999998877766


Q ss_pred             eCC
Q 026506          213 SPC  215 (237)
Q Consensus       213 ~~~  215 (237)
                      .|.
T Consensus       326 l~~  328 (489)
T COG0286         326 LPD  328 (489)
T ss_pred             ecC
Confidence            554

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=98.10  E-value=4.4e-05  Score=63.64  Aligned_cols=105  Identities=20%  Similarity=0.295  Sum_probs=68.7

Q ss_pred             HHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-ccccCCCCCCCC
Q 026506          101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV-RDIQGQGFPDEF  178 (237)
Q Consensus       101 ~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~  178 (237)
                      +....+.++++||..|+|+ |..+.++++... ..++++++.+++..+.+++    .+.+..+.... .+.. ..+....
T Consensus       155 ~~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~-g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~-~~v~~~~  228 (338)
T PRK09422        155 IKVSGIKPGQWIAIYGAGGLGNLALQYAKNVF-NAKVIAVDINDDKLALAKE----VGADLTINSKRVEDVA-KIIQEKT  228 (338)
T ss_pred             HHhcCCCCCCEEEEECCcHHHHHHHHHHHHhC-CCeEEEEeCChHHHHHHHH----cCCcEEecccccccHH-HHHHHhc
Confidence            3456788999999999876 777777777642 3579999999998888855    45433122111 1111 1111111


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                       +++|.++.+.... ..++.+.+.|+++|+++.++
T Consensus       229 -~~~d~vi~~~~~~-~~~~~~~~~l~~~G~~v~~g  261 (338)
T PRK09422        229 -GGAHAAVVTAVAK-AAFNQAVDAVRAGGRVVAVG  261 (338)
T ss_pred             -CCCcEEEEeCCCH-HHHHHHHHhccCCCEEEEEe
Confidence             3588767665543 47899999999999998765

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=98.05  E-value=5.4e-05  Score=62.81  Aligned_cols=177  Identities=19%  Similarity=0.216  Sum_probs=95.8

Q ss_pred             CCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc----c
Q 026506           15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR----T   89 (237)
Q Consensus        15 ~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~   89 (237)
                      .+++||+|......+        ||.|..|..+..+.|...+. .|..   ..|.+. +...+...  ....+..    .
T Consensus        78 ~~~~Gd~V~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~g~~---~~g~~~~~~~~~~~~--~~~~p~~~~~~~  143 (342)
T cd08266          78 NVKPGQRVVIYPGIS--------CGRCEYCLAGRENLCAQYGI-LGEH---VDGGYAEYVAVPARN--LLPIPDNLSFEE  143 (342)
T ss_pred             CCCCCCEEEEccccc--------cccchhhccccccccccccc-cccc---cCcceeEEEEechHH--ceeCCCCCCHHH
Confidence            588999999887555        88888888887777763221 1111   122222 23333211  1111111    0


Q ss_pred             ccccccc--HH--HHHHhcCCCCCCEEEEEccCc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 026506           90 QILYIAD--IS--FVIMYLELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT  163 (237)
Q Consensus        90 ~~~~~~~--~~--~~~~~~~~~~~~~vldiG~G~--G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~  163 (237)
                      ....+..  .+  .+.......++.+++..|++.  |..+..++...  ..+++.++.+++..+.++.    .+....+.
T Consensus       144 a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~----~~~~~~~~  217 (342)
T cd08266         144 AAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLF--GATVIATAGSEDKLERAKE----LGADYVID  217 (342)
T ss_pred             HHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCeEEe
Confidence            0011111  11  122345677889999999864  55555566654  3578888988887776644    23322121


Q ss_pred             EEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          164 VGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       164 ~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ....+.............+|+++...+.  ..+..+.+.++++|.++.++
T Consensus       218 ~~~~~~~~~~~~~~~~~~~d~~i~~~g~--~~~~~~~~~l~~~G~~v~~~  265 (342)
T cd08266         218 YRKEDFVREVRELTGKRGVDVVVEHVGA--ATWEKSLKSLARGGRLVTCG  265 (342)
T ss_pred             cCChHHHHHHHHHhCCCCCcEEEECCcH--HHHHHHHHHhhcCCEEEEEe
Confidence            1111111000000011468998866554  35788889999999998765

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=98.04  E-value=9.6e-06  Score=65.99  Aligned_cols=112  Identities=24%  Similarity=0.278  Sum_probs=86.8

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHH-------HHHHHHHHcC-CCCcEEEEEccccC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAA-------SAREDFERTG-VSSFVTVGVRDIQG  171 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~-------~a~~~~~~~~-~~~~i~~~~~d~~~  171 (237)
                      +...+.++||+.|+|-..|||++....+..   ++-|+|.|++-.++.       ..+.|+++.| .+.-+.+..+|+..
T Consensus       200 ~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn  276 (421)
T KOG2671|consen  200 MANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSN  276 (421)
T ss_pred             HhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccC
Confidence            455677899999999999999998777766   378999999877665       3577888888 34556788899886


Q ss_pred             CCCCCCCCCCCCEEEEeCCCh--------------------------------------hchHHHHHhcccCCCEEEEEe
Q 026506          172 QGFPDEFSGLADSIFLDLPQP--------------------------------------WLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       172 ~~~~~~~~~~~D~v~~~~~~~--------------------------------------~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .++-.  ...||.|++|+|--                                      ...+.-..+.|..||+++++-
T Consensus       277 ~~~rs--n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~  354 (421)
T KOG2671|consen  277 PPLRS--NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWL  354 (421)
T ss_pred             cchhh--cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEec
Confidence            44433  25799999998710                                      135777899999999999998


Q ss_pred             CCH
Q 026506          214 PCI  216 (237)
Q Consensus       214 ~~~  216 (237)
                      |..
T Consensus       355 p~~  357 (421)
T KOG2671|consen  355 PTI  357 (421)
T ss_pred             Cch
Confidence            754

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.04  E-value=6.7e-05  Score=61.91  Aligned_cols=108  Identities=12%  Similarity=0.119  Sum_probs=72.6

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEccccCC-C-CCC-CC
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAP---TGHVYTFDFHEQRAASAREDFERTGVSS-FVTVGVRDIQGQ-G-FPD-EF  178 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~-~-~~~-~~  178 (237)
                      +.++..++|+|||.|.-+..++..+..   ...++.+|+|.+.++.+.+++.....+. .+..+.+|+.+. . ++. ..
T Consensus        74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~  153 (319)
T TIGR03439        74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPEN  153 (319)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccc
Confidence            356779999999999998887776632   3679999999999999999887333333 244477888641 1 111 11


Q ss_pred             CCCCCEEEE------eC--CChhchHHHHHh-cccCCCEEEEEe
Q 026506          179 SGLADSIFL------DL--PQPWLAIPSAKK-MLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~------~~--~~~~~~l~~~~~-~L~~gG~l~~~~  213 (237)
                      .....+++.      |.  .....+|+++.+ .|+||+.+++-.
T Consensus       154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~  197 (319)
T TIGR03439       154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL  197 (319)
T ss_pred             cCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence            133555543      11  122357888988 999999988543

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.00  E-value=3.4e-05  Score=56.18  Aligned_cols=58  Identities=17%  Similarity=0.251  Sum_probs=48.6

Q ss_pred             EEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 026506          111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ  170 (237)
Q Consensus       111 ~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~  170 (237)
                      +++|+|||.|..+..++... +..+++++|.++.+.+.+++++..++..+ +.+....+.
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~   58 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVG   58 (143)
T ss_pred             CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeee
Confidence            48999999999998888764 55689999999999999999998887765 777665554

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=98.00  E-value=0.00013  Score=60.66  Aligned_cols=100  Identities=24%  Similarity=0.239  Sum_probs=65.6

Q ss_pred             HhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506          102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG  180 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  180 (237)
                      ......++.+||..|+|. |..+..+++..+  .++++++.+++..+.+++    .+....+.....+.. .. ..   +
T Consensus       156 ~~~~~~~~~~vlI~g~g~iG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~-~~-~~---~  224 (330)
T cd08245         156 RDAGPRPGERVAVLGIGGLGHLAVQYARAMG--FETVAITRSPDKRELARK----LGADEVVDSGAELDE-QA-AA---G  224 (330)
T ss_pred             HhhCCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----hCCcEEeccCCcchH-Hh-cc---C
Confidence            345678899999999886 777777777753  578999999988877754    343221111111111 11 11   4


Q ss_pred             CCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       181 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .+|+++...... ..+..+.+.|+++|+++.++
T Consensus       225 ~~d~vi~~~~~~-~~~~~~~~~l~~~G~~i~~~  256 (330)
T cd08245         225 GADVILVTVVSG-AAAEAALGGLRRGGRIVLVG  256 (330)
T ss_pred             CCCEEEECCCcH-HHHHHHHHhcccCCEEEEEC
Confidence            699977543332 37788899999999998775

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=97.99  E-value=0.00018  Score=60.11  Aligned_cols=101  Identities=21%  Similarity=0.269  Sum_probs=67.3

Q ss_pred             HhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506          102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG  180 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  180 (237)
                      ..+.+.++.+++..|+|. |..+.++++..+  .++++++.+++..+.+++    .+.+..+.....+..     .....
T Consensus       163 ~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~-----~~~~~  231 (337)
T cd05283         163 KRNGVGPGKRVGVVGIGGLGHLAVKFAKALG--AEVTAFSRSPSKKEDALK----LGADEFIATKDPEAM-----KKAAG  231 (337)
T ss_pred             HhcCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH----cCCcEEecCcchhhh-----hhccC
Confidence            445678899999998877 777777777753  579999998888887754    353321211111111     11125


Q ss_pred             CCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       181 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .+|+++...+.. ..++.+.+.|+++|+++.++.
T Consensus       232 ~~d~v~~~~g~~-~~~~~~~~~l~~~G~~v~~g~  264 (337)
T cd05283         232 SLDLIIDTVSAS-HDLDPYLSLLKPGGTLVLVGA  264 (337)
T ss_pred             CceEEEECCCCc-chHHHHHHHhcCCCEEEEEec
Confidence            699988655543 357888999999999997763

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=97.99  E-value=3e-05  Score=58.28  Aligned_cols=105  Identities=26%  Similarity=0.288  Sum_probs=65.1

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHH---------H-HHHHHHHHHcCCCCcEEEEEccc
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQR---------A-ASAREDFERTGVSSFVTVGVRDI  169 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~---------~-~~a~~~~~~~~~~~~i~~~~~d~  169 (237)
                      ++...++++|++|+|+-.|.|+++..++...++.+.|+++-..+..         + ..+++.    ...| .+....+.
T Consensus        40 ~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~----~~aN-~e~~~~~~  114 (238)
T COG4798          40 VLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP----VYAN-VEVIGKPL  114 (238)
T ss_pred             eeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh----hhhh-hhhhCCcc
Confidence            4556678999999999999999999999999988889888543321         1 111111    1112 22222222


Q ss_pred             cCCCCCCCCCCCCCEEE--------E----eCCChhchHHHHHhcccCCCEEEEEe
Q 026506          170 QGQGFPDEFSGLADSIF--------L----DLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       170 ~~~~~~~~~~~~~D~v~--------~----~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .... +.   +..|++.        .    .......+...+++.|||||.+.+..
T Consensus       115 ~A~~-~p---q~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d  166 (238)
T COG4798         115 VALG-AP---QKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED  166 (238)
T ss_pred             cccC-CC---CcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence            2111 11   2334432        2    12222357888999999999998774

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=97.99  E-value=6.3e-05  Score=59.03  Aligned_cols=105  Identities=21%  Similarity=0.236  Sum_probs=76.8

Q ss_pred             HHhcCCCCCCEEEEEcc--CccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          101 IMYLELVPGCLVLESGT--GSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       101 ~~~~~~~~~~~vldiG~--G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .+..+++||++||..-+  |.|.+..++++..  ..++++.-.+.+..+.|+++    |....|.....|+.+....-..
T Consensus       139 ~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~--~a~tI~~asTaeK~~~aken----G~~h~I~y~~eD~v~~V~kiTn  212 (336)
T KOG1197|consen  139 FEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAV--GAHTIATASTAEKHEIAKEN----GAEHPIDYSTEDYVDEVKKITN  212 (336)
T ss_pred             HHhcCCCCCCEEEEEeccccHHHHHHHHHHhc--CcEEEEEeccHHHHHHHHhc----CCcceeeccchhHHHHHHhccC
Confidence            34567999999997644  3367777788775  46788888888888888884    7766688888888763222222


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +.++|+++-....  ++++..+..||++|.++.++
T Consensus       213 gKGVd~vyDsvG~--dt~~~sl~~Lk~~G~mVSfG  245 (336)
T KOG1197|consen  213 GKGVDAVYDSVGK--DTFAKSLAALKPMGKMVSFG  245 (336)
T ss_pred             CCCceeeeccccc--hhhHHHHHHhccCceEEEec
Confidence            3679997754443  37899999999999999774

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=97.98  E-value=0.00012  Score=64.14  Aligned_cols=103  Identities=19%  Similarity=0.220  Sum_probs=68.7

Q ss_pred             CCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEccccCCC----CCCC--
Q 026506          106 LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS-FVTVGVRDIQGQG----FPDE--  177 (237)
Q Consensus       106 ~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~----~~~~--  177 (237)
                      ..++++|+.+|+|+ |..++..++.++  ..|+++|.++++++.+++    .|... .++....+.....    ....  
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes----lGA~~v~i~~~e~~~~~~gya~~~s~~~~  235 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES----MGAEFLELDFEEEGGSGDGYAKVMSEEFI  235 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCeEEEeccccccccccchhhhcchhHH
Confidence            45799999999999 888888888874  379999999999998887    45431 0111111100000    0000  


Q ss_pred             -------C--CCCCCEEEEeCCCh----hch-HHHHHhcccCCCEEEEEeC
Q 026506          178 -------F--SGLADSIFLDLPQP----WLA-IPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       178 -------~--~~~~D~v~~~~~~~----~~~-l~~~~~~L~~gG~l~~~~~  214 (237)
                             .  ..++|+||.....+    ..+ .+++.+.+||||+++.++.
T Consensus       236 ~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        236 KAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence                   0  13699998765432    224 5999999999999997764

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=97.96  E-value=0.00011  Score=61.48  Aligned_cols=105  Identities=18%  Similarity=0.256  Sum_probs=65.9

Q ss_pred             HHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC-CCCCCCC
Q 026506          101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGFPDEF  178 (237)
Q Consensus       101 ~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~  178 (237)
                      +......++.+||..|+|. |..+..+++..+ ...+++++.+++..+.+++    .+....+........+ .....  
T Consensus       152 l~~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G-~~~v~~~~~~~~~~~~l~~----~g~~~~~~~~~~~~~~~~~~~~--  224 (343)
T cd08236         152 VRLAGITLGDTVVVIGAGTIGLLAIQWLKILG-AKRVIAVDIDDEKLAVARE----LGADDTINPKEEDVEKVRELTE--  224 (343)
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCCCEEecCccccHHHHHHHhC--
Confidence            3456678899999998776 777778888763 2348888888877776644    3442212221111000 01111  


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +..+|+++..... ...+..+.+.|+++|+++.++
T Consensus       225 ~~~~d~vld~~g~-~~~~~~~~~~l~~~G~~v~~g  258 (343)
T cd08236         225 GRGADLVIEAAGS-PATIEQALALARPGGKVVLVG  258 (343)
T ss_pred             CCCCCEEEECCCC-HHHHHHHHHHhhcCCEEEEEc
Confidence            1359997755433 337788899999999998775

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=97.96  E-value=7.8e-05  Score=61.80  Aligned_cols=171  Identities=19%  Similarity=0.265  Sum_probs=94.0

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCcc---
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHRT---   89 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---   89 (237)
                      ..+++||+|+.....+        |+.|.+|..|..+.|.... .++.   ...|.+. +...+...  ...++...   
T Consensus        74 ~~~~~Gd~V~~~~~~~--------~~~c~~~~~~~~~~~~~~~-~~~~---~~~g~~~~~~~v~~~~--~~~~p~~~~~~  139 (325)
T cd08264          74 KGVKKGDRVVVYNRVF--------DGTCDMCLSGNEMLCRNGG-IIGV---VSNGGYAEYIVVPEKN--LFKIPDSISDE  139 (325)
T ss_pred             CCCCCCCEEEECCCcC--------CCCChhhcCCCccccCccc-eeec---cCCCceeeEEEcCHHH--ceeCCCCCCHH
Confidence            3589999999876444        8889999989888876321 1111   1123333 33333211  11111110   


Q ss_pred             -cccccc--cH-HHHHHhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 026506           90 -QILYIA--DI-SFVIMYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT  163 (237)
Q Consensus        90 -~~~~~~--~~-~~~~~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~  163 (237)
                       ....+.  .. ...+....++++++|+.+|+ |+ |..++.+++..+  .+++++..    .+.++    ..+.+..+.
T Consensus       140 ~~~~~~~~~~~a~~~l~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G--~~v~~~~~----~~~~~----~~g~~~~~~  209 (325)
T cd08264         140 LAASLPVAALTAYHALKTAGLGPGETVVVFGASGNTGIFAVQLAKMMG--AEVIAVSR----KDWLK----EFGADEVVD  209 (325)
T ss_pred             HhhhhhhhhHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcC--CeEEEEeH----HHHHH----HhCCCeeec
Confidence             000010  01 11234467789999999997 66 777788888764  46777752    13332    245432122


Q ss_pred             EEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          164 VGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       164 ~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ..  +.. ..+.... +.+|+|+.....  ..+..+.+.|+++|+++.++.
T Consensus       210 ~~--~~~-~~l~~~~-~~~d~vl~~~g~--~~~~~~~~~l~~~g~~v~~g~  254 (325)
T cd08264         210 YD--EVE-EKVKEIT-KMADVVINSLGS--SFWDLSLSVLGRGGRLVTFGT  254 (325)
T ss_pred             ch--HHH-HHHHHHh-CCCCEEEECCCH--HHHHHHHHhhccCCEEEEEec
Confidence            11  111 1111111 458997754443  478999999999999997653

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.95  E-value=0.00011  Score=56.20  Aligned_cols=100  Identities=22%  Similarity=0.265  Sum_probs=73.3

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC--CCCCCCCCCCCC
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLAD  183 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~~~~D  183 (237)
                      ..+|.+||++|-|.|.....+.++ .+ .+-+.+|.+|+.++..++.....  ..++.+..+-..+  ..+++   +.||
T Consensus        99 ~tkggrvLnVGFGMgIidT~iQe~-~p-~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~WeDvl~~L~d---~~FD  171 (271)
T KOG1709|consen   99 STKGGRVLNVGFGMGIIDTFIQEA-PP-DEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGRWEDVLNTLPD---KHFD  171 (271)
T ss_pred             hhCCceEEEeccchHHHHHHHhhc-CC-cceEEEecCHHHHHHHHhccccc--ccceEEEecchHhhhccccc---cCcc
Confidence            377899999999999988777776 35 45566899999999998864322  1235555554432  34454   7799


Q ss_pred             EEEEeCC-----ChhchHHHHHhcccCCCEEEEE
Q 026506          184 SIFLDLP-----QPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       184 ~v~~~~~-----~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                      -|+.|.-     +.+.+.+.+.++|||+|++-.+
T Consensus       172 GI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Syf  205 (271)
T KOG1709|consen  172 GIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYF  205 (271)
T ss_pred             eeEeechhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence            9998864     3456888999999999998654

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=97.94  E-value=0.00011  Score=61.04  Aligned_cols=173  Identities=15%  Similarity=0.132  Sum_probs=97.8

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc----
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR----   88 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----   88 (237)
                      ..+++||+|+.....+        |+.|.+|..|..+.|.... .+|..   ..|.+. +...|. + +...++..    
T Consensus        74 ~~~~~G~~V~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~~---~~g~~~~~~~~~~-~-~~~~lp~~~~~~  139 (334)
T PRK13771         74 KGFKPGDRVASLLYAP--------DGTCEYCRSGEEAYCKNRL-GYGEE---LDGFFAEYAKVKV-T-SLVKVPPNVSDE  139 (334)
T ss_pred             ccCCCCCEEEECCCCC--------CcCChhhcCCCcccCcccc-ccccc---cCceeeeeeecch-h-ceEECCCCCCHH
Confidence            3578999999876445        8888889888877775321 12211   122222 222221 1 11111110    


Q ss_pred             -cc-ccccccHH-HHHHhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 026506           89 -TQ-ILYIADIS-FVIMYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT  163 (237)
Q Consensus        89 -~~-~~~~~~~~-~~~~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~  163 (237)
                       .. .......+ ..+..+...++++|+..|+ |. |..+.++++..+  .++++++.+++..+.+++. ...-    +.
T Consensus       140 ~~a~l~~~~~~a~~~~~~~~~~~~~~vlI~g~~g~~g~~~~~la~~~g--~~vi~~~~~~~~~~~~~~~-~~~~----~~  212 (334)
T PRK13771        140 GAVIVPCVTGMVYRGLRRAGVKKGETVLVTGAGGGVGIHAIQVAKALG--AKVIAVTSSESKAKIVSKY-ADYV----IV  212 (334)
T ss_pred             HhhcccchHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHH-HHHh----cC
Confidence             00 01111111 1233447788999999998 44 778888888863  5788888888888887553 1111    11


Q ss_pred             EEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          164 VGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       164 ~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ..  +.. ..+...  +.+|+++.....  ..+..+.+.|+++|+++.++.
T Consensus       213 ~~--~~~-~~v~~~--~~~d~~ld~~g~--~~~~~~~~~l~~~G~~v~~g~  256 (334)
T PRK13771        213 GS--KFS-EEVKKI--GGADIVIETVGT--PTLEESLRSLNMGGKIIQIGN  256 (334)
T ss_pred             ch--hHH-HHHHhc--CCCcEEEEcCCh--HHHHHHHHHHhcCCEEEEEec
Confidence            11  111 111111  258997755443  257888999999999987753

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=97.93  E-value=0.00022  Score=59.53  Aligned_cols=106  Identities=19%  Similarity=0.150  Sum_probs=66.1

Q ss_pred             HhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC--C-CCCC
Q 026506          102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--G-FPDE  177 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~-~~~~  177 (237)
                      ......++++||..|+|. |..+.++++..+ ...+++++.+++..+.+++    .+....+.....+..+.  . ....
T Consensus       155 ~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~~~  229 (341)
T cd08262         155 RRARLTPGEVALVIGCGPIGLAVIAALKARG-VGPIVASDFSPERRALALA----MGADIVVDPAADSPFAAWAAELARA  229 (341)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----cCCcEEEcCCCcCHHHHHHHHHHHh
Confidence            455678899999998766 667777787764 3458888988888887765    34322122111111000  0 0001


Q ss_pred             CCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       178 ~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .+..+|+++..... ...+..+.+.++++|+++.++
T Consensus       230 ~~~~~d~vid~~g~-~~~~~~~~~~l~~~g~~v~~g  264 (341)
T cd08262         230 GGPKPAVIFECVGA-PGLIQQIIEGAPPGGRIVVVG  264 (341)
T ss_pred             CCCCCCEEEECCCC-HHHHHHHHHHhccCCEEEEEC
Confidence            12469997754433 236788899999999998765

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=97.92  E-value=2e-05  Score=60.74  Aligned_cols=95  Identities=19%  Similarity=0.205  Sum_probs=70.9

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL  187 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~  187 (237)
                      ....++||||+-|.+..++...  +-.+++-+|.|-.|++.++..- ..++  ......+|-...++.+   .++|+|+.
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~~q-dp~i--~~~~~v~DEE~Ldf~e---ns~DLiis  143 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRDAQ-DPSI--ETSYFVGDEEFLDFKE---NSVDLIIS  143 (325)
T ss_pred             hCcceeecccchhhhhHHHHhc--chhheeeeecchHHHHHhhccC-CCce--EEEEEecchhcccccc---cchhhhhh
Confidence            3458999999999999888765  3478999999999999887631 1121  1445666765555665   88999986


Q ss_pred             eCCChh-----chHHHHHhcccCCCEEE
Q 026506          188 DLPQPW-----LAIPSAKKMLKQDGILC  210 (237)
Q Consensus       188 ~~~~~~-----~~l~~~~~~L~~gG~l~  210 (237)
                      ....+|     ..+.++...|||.|.++
T Consensus       144 SlslHW~NdLPg~m~~ck~~lKPDg~Fi  171 (325)
T KOG2940|consen  144 SLSLHWTNDLPGSMIQCKLALKPDGLFI  171 (325)
T ss_pred             hhhhhhhccCchHHHHHHHhcCCCccch
Confidence            554444     46889999999999987

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=97.90  E-value=0.00018  Score=59.69  Aligned_cols=95  Identities=23%  Similarity=0.285  Sum_probs=65.3

Q ss_pred             HhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506          102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG  180 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  180 (237)
                      ...+++++.++|..|+|. |..+..+++..+  .++++++.+++..+.+++    .|.+..+     +...  .+.   .
T Consensus       161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g--~~v~~~~~~~~~~~~~~~----~g~~~~~-----~~~~--~~~---~  224 (329)
T cd08298         161 KLAGLKPGQRLGLYGFGASAHLALQIARYQG--AEVFAFTRSGEHQELARE----LGADWAG-----DSDD--LPP---E  224 (329)
T ss_pred             HhhCCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEcCChHHHHHHHH----hCCcEEe-----ccCc--cCC---C
Confidence            556788899999998887 666677777753  688888888887777754    3542211     1111  122   4


Q ss_pred             CCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       181 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .+|+++...+.. ..++.+.+.|+++|+++.++
T Consensus       225 ~vD~vi~~~~~~-~~~~~~~~~l~~~G~~v~~g  256 (329)
T cd08298         225 PLDAAIIFAPVG-ALVPAALRAVKKGGRVVLAG  256 (329)
T ss_pred             cccEEEEcCCcH-HHHHHHHHHhhcCCEEEEEc
Confidence            689877644433 47899999999999999765

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=97.88  E-value=3.7e-05  Score=64.44  Aligned_cols=105  Identities=22%  Similarity=0.214  Sum_probs=84.6

Q ss_pred             cCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCC
Q 026506          104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLAD  183 (237)
Q Consensus       104 ~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D  183 (237)
                      ....++..++|+|||.|.....++..  ....+++++.++..+..+........+++...+...|+.+.++++   ..||
T Consensus       106 ~~~~~~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fed---n~fd  180 (364)
T KOG1269|consen  106 ESCFPGSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFED---NTFD  180 (364)
T ss_pred             hcCcccccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCc---cccC
Confidence            35678889999999999999888877  347899999999888877776666666666667888888766776   7788


Q ss_pred             EEE-----EeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          184 SIF-----LDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       184 ~v~-----~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .+.     ...+..+..++++++.++|||..+.+.
T Consensus       181 ~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e  215 (364)
T KOG1269|consen  181 GVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKE  215 (364)
T ss_pred             cEEEEeecccCCcHHHHHHHHhcccCCCceEEeHH
Confidence            874     356788889999999999999998554

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.88  E-value=0.00033  Score=53.96  Aligned_cols=116  Identities=18%  Similarity=0.157  Sum_probs=83.9

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      +.+..++|+||-.+++...+... ++...+++.|+++.-++.|.+++.++++..++++..+|.. ..+...  ..+|+++
T Consensus        15 ~~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl-~~l~~~--d~~d~iv   90 (226)
T COG2384          15 KQGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGL-AVLELE--DEIDVIV   90 (226)
T ss_pred             HcCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCc-cccCcc--CCcCEEE
Confidence            45666999999999999998887 4678899999999999999999999999888999999987 444431  4799987


Q ss_pred             Ee-CCCh--hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh
Q 026506          187 LD-LPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL  228 (237)
Q Consensus       187 ~~-~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~  228 (237)
                      +. ++..  .+.+++..+.|+.=-+++ +.|... ...+.++|..
T Consensus        91 IAGMGG~lI~~ILee~~~~l~~~~rlI-LQPn~~-~~~LR~~L~~  133 (226)
T COG2384          91 IAGMGGTLIREILEEGKEKLKGVERLI-LQPNIH-TYELREWLSA  133 (226)
T ss_pred             EeCCcHHHHHHHHHHhhhhhcCcceEE-ECCCCC-HHHHHHHHHh
Confidence            65 3433  245666666665443444 666542 2334444444

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.87  E-value=2.2e-05  Score=67.26  Aligned_cols=94  Identities=24%  Similarity=0.325  Sum_probs=61.5

Q ss_pred             CEEEEEccCccHHHHHHHHHhCCCcEEEEE-----eCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          110 CLVLESGTGSGSLTTSLARAVAPTGHVYTF-----DFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       110 ~~vldiG~G~G~~~~~~~~~~~~~~~v~~v-----D~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      .++||+|||+|.++..++.+     .|+++     |..+..+++|.++    |+...+.+ .+. ...+++.   +.||+
T Consensus       119 R~~LDvGcG~aSF~a~l~~r-----~V~t~s~a~~d~~~~qvqfaleR----Gvpa~~~~-~~s-~rLPfp~---~~fDm  184 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLER-----NVTTMSFAPNDEHEAQVQFALER----GVPAMIGV-LGS-QRLPFPS---NAFDM  184 (506)
T ss_pred             EEEEeccceeehhHHHHhhC-----CceEEEcccccCCchhhhhhhhc----Ccchhhhh-hcc-ccccCCc---cchhh
Confidence            37899999999999888775     23333     4445566777664    65442221 112 2266777   78999


Q ss_pred             EEEe-CCCh-----hchHHHHHhcccCCCEEEEEeCCHH
Q 026506          185 IFLD-LPQP-----WLAIPSAKKMLKQDGILCSFSPCIE  217 (237)
Q Consensus       185 v~~~-~~~~-----~~~l~~~~~~L~~gG~l~~~~~~~~  217 (237)
                      |-+. ...+     .-+|-++.|+|+|||.++..+|...
T Consensus       185 vHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~  223 (506)
T PF03141_consen  185 VHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY  223 (506)
T ss_pred             hhcccccccchhcccceeehhhhhhccCceEEecCCccc
Confidence            7542 1112     2478889999999999997777544

; GO: 0008168 methyltransferase activity

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.86  E-value=4.7e-05  Score=54.74  Aligned_cols=76  Identities=28%  Similarity=0.479  Sum_probs=54.1

Q ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC--CCCCCCCCCCCCEEEEeCC-----C---------hhchHHH
Q 026506          135 HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLADSIFLDLP-----Q---------PWLAIPS  198 (237)
Q Consensus       135 ~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~~~~D~v~~~~~-----~---------~~~~l~~  198 (237)
                      +|+++|+.+++++.++++++..+..++++++..+=..  .-++.   +.+|+++.|.+     +         ...+++.
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~---~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~   77 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPE---GPVDAAIFNLGYLPGGDKSITTKPETTLKALEA   77 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S-----EEEEEEEESB-CTS-TTSB--HHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCcc---CCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHH
Confidence            5899999999999999999999887778888765433  11222   47999988753     1         1257999


Q ss_pred             HHhcccCCCEEEEEe
Q 026506          199 AKKMLKQDGILCSFS  213 (237)
Q Consensus       199 ~~~~L~~gG~l~~~~  213 (237)
                      +.+.|+|||++.++.
T Consensus        78 al~lL~~gG~i~iv~   92 (140)
T PF06962_consen   78 ALELLKPGGIITIVV   92 (140)
T ss_dssp             HHHHEEEEEEEEEEE
T ss_pred             HHHhhccCCEEEEEE
Confidence            999999999987554

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=97.81  E-value=0.00032  Score=58.30  Aligned_cols=104  Identities=20%  Similarity=0.216  Sum_probs=65.5

Q ss_pred             HhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506          102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG  180 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  180 (237)
                      ......++++||.+|+|. |..+.++++..+ ...+++++.+++..+.+++    .+....+.....+....  ......
T Consensus       153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~--~~~~~~  225 (334)
T cd08234         153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNG-ASRVTVAEPNEEKLELAKK----LGATETVDPSREDPEAQ--KEDNPY  225 (334)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----hCCeEEecCCCCCHHHH--HHhcCC
Confidence            456778899999998765 667777777753 2348888888888877754    34321111111111000  001125


Q ss_pred             CCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       181 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .+|+++...+. ...++.+.+.|+++|+++.++
T Consensus       226 ~vd~v~~~~~~-~~~~~~~~~~l~~~G~~v~~g  257 (334)
T cd08234         226 GFDVVIEATGV-PKTLEQAIEYARRGGTVLVFG  257 (334)
T ss_pred             CCcEEEECCCC-hHHHHHHHHHHhcCCEEEEEe
Confidence            69998765443 347888899999999998765

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=97.80  E-value=0.00013  Score=59.96  Aligned_cols=92  Identities=20%  Similarity=0.274  Sum_probs=69.3

Q ss_pred             CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE-
Q 026506          109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL-  187 (237)
Q Consensus       109 ~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~-  187 (237)
                      -...+|+|.|.|..+..++...   .++-+++.+...+..++.... .|    ++...+|.++. .|.     .|+|++ 
T Consensus       178 v~~avDvGgGiG~v~k~ll~~f---p~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~P~-----~daI~mk  243 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKY---PHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-TPK-----GDAIWMK  243 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhC---CCCceeecCHHHHHhhhhhhc-CC----cceeccccccc-CCC-----cCeEEEE
Confidence            3789999999999999998864   347788888777777766543 33    66688898854 554     578875 


Q ss_pred             ----eCCCh--hchHHHHHhcccCCCEEEEEeC
Q 026506          188 ----DLPQP--WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       188 ----~~~~~--~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                          |.++.  ..+|+++++.|+|||.+++...
T Consensus       244 WiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~  276 (342)
T KOG3178|consen  244 WILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN  276 (342)
T ss_pred             eecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence                34333  3689999999999999997754

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.79  E-value=0.00013  Score=60.03  Aligned_cols=87  Identities=21%  Similarity=0.110  Sum_probs=59.4

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..+|.++||+||++|+++..+++.   +.+|+++|..+ +-....      . +.++.....|.... .+.  .+.+|.+
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-l~~~L~------~-~~~V~h~~~d~fr~-~p~--~~~vDwv  274 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-MAQSLM------D-TGQVEHLRADGFKF-RPP--RKNVDWL  274 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-cCHhhh------C-CCCEEEEeccCccc-CCC--CCCCCEE
Confidence            468999999999999999888887   35999999543 222111      1 23477777777642 221  2789999


Q ss_pred             EEeCCCh-hchHHHHHhcccCC
Q 026506          186 FLDLPQP-WLAIPSAKKMLKQD  206 (237)
Q Consensus       186 ~~~~~~~-~~~l~~~~~~L~~g  206 (237)
                      ++|+... ..+.+.+.+.|..|
T Consensus       275 VcDmve~P~rva~lm~~Wl~~g  296 (357)
T PRK11760        275 VCDMVEKPARVAELMAQWLVNG  296 (357)
T ss_pred             EEecccCHHHHHHHHHHHHhcC
Confidence            9998644 34556666666555

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.79  E-value=6.6e-05  Score=57.60  Aligned_cols=109  Identities=17%  Similarity=0.155  Sum_probs=58.0

Q ss_pred             CCCEEEEEccCccHHHHHHHH---HhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC----CCCC-CCC
Q 026506          108 PGCLVLESGTGSGSLTTSLAR---AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ----GFPD-EFS  179 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~---~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~-~~~  179 (237)
                      +++.|+|+|.-.|+.++..|.   .+++.++|+++|++.....  ++..+.+....+|++.++|..+.    .... ...
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~  109 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMSPRITFIQGDSIDPEIVDQVRELASP  109 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccccCceEEEECCCCCHHHHHHHHHhhcc
Confidence            358999999999988877764   4456789999999643322  12222334456799999998751    1111 111


Q ss_pred             CCCCEEEEeCCCh----hchHHHHHhcccCCCEEEEEeCCHHH
Q 026506          180 GLADSIFLDLPQP----WLAIPSAKKMLKQDGILCSFSPCIEQ  218 (237)
Q Consensus       180 ~~~D~v~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~~~  218 (237)
                      ....+|+.|....    .+.|+.....+++|+++++.....+.
T Consensus       110 ~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~  152 (206)
T PF04989_consen  110 PHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIED  152 (206)
T ss_dssp             -SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHH
T ss_pred             CCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccc
Confidence            3456788776522    35688889999999999866554443

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=97.75  E-value=0.00098  Score=57.10  Aligned_cols=180  Identities=20%  Similarity=0.194  Sum_probs=95.3

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc----
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR----   88 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----   88 (237)
                      ..+++||+|+.....+        |++|.+|+.|....|... ...|.  ....|.+. +...+...  ....+..    
T Consensus        97 ~~~~~Gd~V~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~g~--~~~~g~~ae~~~v~~~~--~~~vP~~l~~~  163 (398)
T TIGR01751        97 TRWKVGDEVVASCLQV--------DLTAPDGRVGDPMLSSEQ-RIWGY--ETNFGSFAEFALVKDYQ--LMPKPKHLTWE  163 (398)
T ss_pred             CCCCCCCEEEEccccc--------cCCchhhccCcccccccc-ccccc--cCCCccceEEEEechHH--eEECCCCCCHH
Confidence            4588999999987555        777888877755444311 11111  01123332 23333211  1111111    


Q ss_pred             -cc-ccccccHHH-HHH---hcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC
Q 026506           89 -TQ-ILYIADISF-VIM---YLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS  160 (237)
Q Consensus        89 -~~-~~~~~~~~~-~~~---~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~  160 (237)
                       .. .......+. ++.   .....+++++|..|+ |. |..+.++++..+  .+++.++.+++..+.+++    .+...
T Consensus       164 ~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G--~~vi~~~~~~~~~~~~~~----~g~~~  237 (398)
T TIGR01751       164 EAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGG--GNPVAVVSSPEKAEYCRE----LGAEA  237 (398)
T ss_pred             HHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH----cCCCE
Confidence             00 011111111 211   245678999999998 55 777777787753  567778888887777765    35432


Q ss_pred             cEEEEEccc----cC-------------CCC----C-CCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          161 FVTVGVRDI----QG-------------QGF----P-DEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       161 ~i~~~~~d~----~~-------------~~~----~-~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .++....|.    .+             ..+    . ...+.++|+++.....  ..+....+.|+++|+++.++.
T Consensus       238 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~--~~~~~~~~~l~~~G~~v~~g~  311 (398)
T TIGR01751       238 VIDRNDFGHWGRLPDLNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGR--ATFPTSVFVCRRGGMVVICGG  311 (398)
T ss_pred             EecCCCcchhhccccccccccchhhhcchhHHHHHHHHcCCCCceEEEECCcH--HHHHHHHHhhccCCEEEEEcc
Confidence            222111000    00             000    0 0011459987765543  468889999999999987753

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=97.75  E-value=9.9e-06  Score=57.93  Aligned_cols=91  Identities=19%  Similarity=0.204  Sum_probs=62.9

Q ss_pred             CccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC-CCCCEEEEeCCChhchH
Q 026506          118 GSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS-GLADSIFLDLPQPWLAI  196 (237)
Q Consensus       118 G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~-~~~D~v~~~~~~~~~~l  196 (237)
                      |.|..+.++++..+  .+++++|.++..++.+++    .|....++....|+.+ .+.+... .++|+||...+.. ..+
T Consensus         1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~----~Ga~~~~~~~~~~~~~-~i~~~~~~~~~d~vid~~g~~-~~~   72 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKE----LGADHVIDYSDDDFVE-QIRELTGGRGVDVVIDCVGSG-DTL   72 (130)
T ss_dssp             HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHH----TTESEEEETTTSSHHH-HHHHHTTTSSEEEEEESSSSH-HHH
T ss_pred             ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHh----hccccccccccccccc-ccccccccccceEEEEecCcH-HHH
Confidence            45788899999874  899999999999999887    4644322222222221 1111111 4799987666544 489


Q ss_pred             HHHHhcccCCCEEEEEeCCH
Q 026506          197 PSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       197 ~~~~~~L~~gG~l~~~~~~~  216 (237)
                      +.+.+.|+++|++++++...
T Consensus        73 ~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   73 QEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             HHHHHHEEEEEEEEEESSTS
T ss_pred             HHHHHHhccCCEEEEEEccC
Confidence            99999999999999887543

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.73  E-value=0.00024  Score=55.31  Aligned_cols=105  Identities=24%  Similarity=0.362  Sum_probs=69.0

Q ss_pred             HHHhcCC-CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          100 VIMYLEL-VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       100 ~~~~~~~-~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      +++.+.+ .++..+||+|+.||+++.-+++.  ++.+|+++|..-.-+..--+     .-+..+.....|+... .++..
T Consensus        70 ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~Ql~~kLR-----~d~rV~~~E~tN~r~l-~~~~~  141 (245)
T COG1189          70 ALEEFELDVKGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYGQLHWKLR-----NDPRVIVLERTNVRYL-TPEDF  141 (245)
T ss_pred             HHHhcCcCCCCCEEEEecCCCccHHHHHHHc--CCcEEEEEEccCCccCHhHh-----cCCcEEEEecCChhhC-CHHHc
Confidence            4455553 46789999999999999888776  56899999986654443222     1123344555666532 22222


Q ss_pred             CCCCCEEEEeCC--ChhchHHHHHhcccCCCEEEEE
Q 026506          179 SGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       179 ~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                      .+..|++++|..  .....|..+...+++++.++..
T Consensus       142 ~~~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~L  177 (245)
T COG1189         142 TEKPDLIVIDVSFISLKLILPALLLLLKDGGDLVLL  177 (245)
T ss_pred             ccCCCeEEEEeehhhHHHHHHHHHHhcCCCceEEEE
Confidence            246889988764  3335788888888888877644

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=97.71  E-value=0.00015  Score=61.00  Aligned_cols=104  Identities=17%  Similarity=0.127  Sum_probs=70.6

Q ss_pred             hcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cccCCCCCCCCC
Q 026506          103 YLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPDEFS  179 (237)
Q Consensus       103 ~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~  179 (237)
                      ...+++|++||..|+ |+ |..+.++++..+  .++++++.+++..+.+++.   .|.+..++.... ++.+ .+.....
T Consensus       153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~-~i~~~~~  226 (348)
T PLN03154        153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDA-ALKRYFP  226 (348)
T ss_pred             hcCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHH-HHHHHCC
Confidence            456889999999998 55 888888888863  5799999999888877632   465443332211 2221 1111112


Q ss_pred             CCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       180 ~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +++|+++-....  ..+..+.+.|+++|++++++.
T Consensus       227 ~gvD~v~d~vG~--~~~~~~~~~l~~~G~iv~~G~  259 (348)
T PLN03154        227 EGIDIYFDNVGG--DMLDAALLNMKIHGRIAVCGM  259 (348)
T ss_pred             CCcEEEEECCCH--HHHHHHHHHhccCCEEEEECc
Confidence            469997755443  378999999999999998764

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=97.70  E-value=0.00036  Score=57.83  Aligned_cols=173  Identities=20%  Similarity=0.247  Sum_probs=94.5

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc----
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR----   88 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----   88 (237)
                      ..+++||+|.......        |+.|.+|+.+..+.|... ..+|..   ..|.+. +...+..  +....+..    
T Consensus        74 ~~~~~Gd~V~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~---~~g~~~~~~~v~~~--~~~~ip~~~~~~  139 (332)
T cd08259          74 ERFKPGDRVILYYYIP--------CGKCEYCLSGEENLCRNR-AEYGEE---VDGGFAEYVKVPER--SLVKLPDNVSDE  139 (332)
T ss_pred             ccCCCCCEEEECCCCC--------CcCChhhhCCCcccCCCc-cccccc---cCCeeeeEEEechh--heEECCCCCCHH
Confidence            4688999999976555        788888888877777642 222211   123332 2222221  11111111    


Q ss_pred             --ccccccccHH-HHHHhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 026506           89 --TQILYIADIS-FVIMYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT  163 (237)
Q Consensus        89 --~~~~~~~~~~-~~~~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~  163 (237)
                        .........+ ..+....+.++.++|..|+ |. |..+..++...  ..+++++..+++..+.+++    .+... + 
T Consensus       140 ~~~~~~~~~~ta~~~l~~~~~~~~~~vlI~ga~g~vG~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~~~~~-~-  211 (332)
T cd08259         140 SAALAACVVGTAVHALKRAGVKKGDTVLVTGAGGGVGIHAIQLAKAL--GARVIAVTRSPEKLKILKE----LGADY-V-  211 (332)
T ss_pred             HHhhhccHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHH----cCCcE-E-
Confidence              0011111111 1223356788999999986 33 66666777665  3578888877777666543    34322 1 


Q ss_pred             EEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          164 VGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       164 ~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +...++. ..+...  ..+|+++......  .+..+.+.++++|+++.++
T Consensus       212 ~~~~~~~-~~~~~~--~~~d~v~~~~g~~--~~~~~~~~~~~~g~~v~~g  256 (332)
T cd08259         212 IDGSKFS-EDVKKL--GGADVVIELVGSP--TIEESLRSLNKGGRLVLIG  256 (332)
T ss_pred             EecHHHH-HHHHhc--cCCCEEEECCChH--HHHHHHHHhhcCCEEEEEc
Confidence            1111111 111111  2589987655432  4778889999999988764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=97.69  E-value=0.00022  Score=59.24  Aligned_cols=104  Identities=13%  Similarity=0.095  Sum_probs=69.8

Q ss_pred             HhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cccCCCCCCCC
Q 026506          102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPDEF  178 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~  178 (237)
                      ...++++|++||..|+ |+ |..+.++++..+  .++++++.+++..+.+++    .|.+..+..... +..+ ......
T Consensus       132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G--~~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~-~~~~~~  204 (325)
T TIGR02825       132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEE-TLKKAS  204 (325)
T ss_pred             HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHH-HHHHhC
Confidence            4567889999999995 54 888888888863  578999989988888865    465432332221 1111 011111


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ++++|+++-....  ..+..+.+.|+++|+++.++.
T Consensus       205 ~~gvdvv~d~~G~--~~~~~~~~~l~~~G~iv~~G~  238 (325)
T TIGR02825       205 PDGYDCYFDNVGG--EFSNTVIGQMKKFGRIAICGA  238 (325)
T ss_pred             CCCeEEEEECCCH--HHHHHHHHHhCcCcEEEEecc
Confidence            2469997754443  256889999999999998764

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.68  E-value=3.6e-05  Score=56.14  Aligned_cols=125  Identities=22%  Similarity=0.195  Sum_probs=80.7

Q ss_pred             CCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC--cEEEEEccccCCCCCCCCCCC
Q 026506          105 ELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS--FVTVGVRDIQGQGFPDEFSGL  181 (237)
Q Consensus       105 ~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~--~i~~~~~d~~~~~~~~~~~~~  181 (237)
                      ....|.+|+++|.|- |..++.+|... +...|+..|-++..++..++....+-...  ......-+... .........
T Consensus        26 n~~rg~~ilelgggft~laglmia~~a-~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~-aqsq~eq~t  103 (201)
T KOG3201|consen   26 NKIRGRRILELGGGFTGLAGLMIACKA-PDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWG-AQSQQEQHT  103 (201)
T ss_pred             hHHhHHHHHHhcCchhhhhhhheeeec-CCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhh-hHHHHhhCc
Confidence            344578999999998 54555566554 56889999999999988887654432111  01111111111 011111257


Q ss_pred             CCEEEE-eCC----ChhchHHHHHhcccCCCEEEEEeCCH-HHHHHHHHHHHh-cCc
Q 026506          182 ADSIFL-DLP----QPWLAIPSAKKMLKQDGILCSFSPCI-EQVQRSCESLRL-NFT  231 (237)
Q Consensus       182 ~D~v~~-~~~----~~~~~l~~~~~~L~~gG~l~~~~~~~-~~~~~~~~~l~~-~f~  231 (237)
                      ||.|+. |..    ....++..+...|+|.|.-++++|-. +++++++..... +|.
T Consensus       104 FDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~  160 (201)
T KOG3201|consen  104 FDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFT  160 (201)
T ss_pred             ccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeE
Confidence            999875 322    22346777889999999999999986 668888888877 664

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.66  E-value=0.00043  Score=56.37  Aligned_cols=80  Identities=20%  Similarity=0.181  Sum_probs=47.7

Q ss_pred             CCEEEEEccCccHH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEccccCCCCCC--CCCCCCCE
Q 026506          109 GCLVLESGTGSGSL-TTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-GVSSFVTVGVRDIQGQGFPD--EFSGLADS  184 (237)
Q Consensus       109 ~~~vldiG~G~G~~-~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~~~~--~~~~~~D~  184 (237)
                      .-++||||+|.... .+..++..  .-+++|.|+++..++.|+++++.+ ++..+|++....-...-+..  .....||.
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~--~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df  180 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLY--GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF  180 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred             ceEeecCCccHHHHHHHHhhhhc--CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence            45899999999644 33334433  479999999999999999999999 88888988764322111111  11247999


Q ss_pred             EEEeCC
Q 026506          185 IFLDLP  190 (237)
Q Consensus       185 v~~~~~  190 (237)
                      .++++|
T Consensus       181 tmCNPP  186 (299)
T PF05971_consen  181 TMCNPP  186 (299)
T ss_dssp             EEE---
T ss_pred             EecCCc
Confidence            999887

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=97.66  E-value=0.00064  Score=56.76  Aligned_cols=105  Identities=25%  Similarity=0.326  Sum_probs=65.5

Q ss_pred             HHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC--CCCCCC
Q 026506          101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDE  177 (237)
Q Consensus       101 ~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~  177 (237)
                      +..+.+.++.+||..|+|. |..+.++++..+. ..+++++.+++..+.+++    .+.+..+.....++.+  ..... 
T Consensus       158 l~~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~-~~v~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~i~~~~~-  231 (343)
T cd08235         158 QRKAGIKPGDTVLVIGAGPIGLLHAMLAKASGA-RKVIVSDLNEFRLEFAKK----LGADYTIDAAEEDLVEKVRELTD-  231 (343)
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHH----hCCcEEecCCccCHHHHHHHHhC-
Confidence            3445778999999998765 6777777777532 338888888888777654    3432211111111111  00111 


Q ss_pred             CCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       178 ~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                       +..+|+|+...... ..+..+.+.|+++|+++.++
T Consensus       232 -~~~vd~vld~~~~~-~~~~~~~~~l~~~g~~v~~~  265 (343)
T cd08235         232 -GRGADVVIVATGSP-EAQAQALELVRKGGRILFFG  265 (343)
T ss_pred             -CcCCCEEEECCCCh-HHHHHHHHHhhcCCEEEEEe
Confidence             14589977554432 37788899999999998775

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=97.64  E-value=0.00012  Score=56.26  Aligned_cols=105  Identities=26%  Similarity=0.231  Sum_probs=73.1

Q ss_pred             CEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe-
Q 026506          110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD-  188 (237)
Q Consensus       110 ~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~-  188 (237)
                      -++||+||=+..........    -.|+.+|+++.               . -.+.+.|+.+.++|....+.||+|.+. 
T Consensus        53 lrlLEVGals~~N~~s~~~~----fdvt~IDLns~---------------~-~~I~qqDFm~rplp~~~~e~FdvIs~SL  112 (219)
T PF11968_consen   53 LRLLEVGALSTDNACSTSGW----FDVTRIDLNSQ---------------H-PGILQQDFMERPLPKNESEKFDVISLSL  112 (219)
T ss_pred             ceEEeecccCCCCcccccCc----eeeEEeecCCC---------------C-CCceeeccccCCCCCCcccceeEEEEEE
Confidence            69999999765444322222    45999999652               1 235678898877765555789999653 


Q ss_pred             ----CCCh---hchHHHHHhcccCCCE-----EEEEeCCHH--H-----HHHHHHHHHh-cCcccc
Q 026506          189 ----LPQP---WLAIPSAKKMLKQDGI-----LCSFSPCIE--Q-----VQRSCESLRL-NFTGKE  234 (237)
Q Consensus       189 ----~~~~---~~~l~~~~~~L~~gG~-----l~~~~~~~~--~-----~~~~~~~l~~-~f~~v~  234 (237)
                          .|++   .+.+.++.+.|+|+|.     |+++.|-..  .     .+++.+.|.. ||..++
T Consensus       113 VLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~  178 (219)
T PF11968_consen  113 VLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVK  178 (219)
T ss_pred             EEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEE
Confidence                3444   4789999999999999     887765432  1     3677788888 887654

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=97.61  E-value=0.0018  Score=54.12  Aligned_cols=104  Identities=25%  Similarity=0.319  Sum_probs=66.7

Q ss_pred             HhcCCCCCCEEEEEccCc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC-CC
Q 026506          102 MYLELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-EF  178 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~G~--G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~  178 (237)
                      ..+.+.++.+||..|+++  |..+..+++..+  .+++++..+++..+.+++    .+.+..+.....+..+ .+.. ..
T Consensus       159 ~~~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~-~~~~~~~  231 (341)
T cd08297         159 KKAGLKPGDWVVISGAGGGLGHLGVQYAKAMG--LRVIAIDVGDEKLELAKE----LGADAFVDFKKSDDVE-AVKELTG  231 (341)
T ss_pred             HhcCCCCCCEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH----cCCcEEEcCCCccHHH-HHHHHhc
Confidence            334778899999999875  667777788763  589999988887776643    3543312222112211 0110 01


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +..+|+++.+.... ..+..+.+.++++|+++.++
T Consensus       232 ~~~vd~vl~~~~~~-~~~~~~~~~l~~~g~~v~~g  265 (341)
T cd08297         232 GGGAHAVVVTAVSA-AAYEQALDYLRPGGTLVCVG  265 (341)
T ss_pred             CCCCCEEEEcCCch-HHHHHHHHHhhcCCEEEEec
Confidence            25699977544433 37788899999999999775

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=97.55  E-value=0.00037  Score=57.78  Aligned_cols=103  Identities=15%  Similarity=0.156  Sum_probs=69.7

Q ss_pred             HhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ...++.+|++||..|+ |. |..+.++++..+  .++++++.+++..+.+++    .|.+..++....|+.+ .+.....
T Consensus       137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G--~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~-~v~~~~~  209 (329)
T cd08294         137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKG--CKVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEE-ALKEAAP  209 (329)
T ss_pred             HhcCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHH-HHHHHCC
Confidence            4456889999999984 44 778888888863  579999989988888876    4654323332223221 1111112


Q ss_pred             CCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       180 ~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +++|+|+-....  ..++...+.|+++|+++.++
T Consensus       210 ~gvd~vld~~g~--~~~~~~~~~l~~~G~iv~~g  241 (329)
T cd08294         210 DGIDCYFDNVGG--EFSSTVLSHMNDFGRVAVCG  241 (329)
T ss_pred             CCcEEEEECCCH--HHHHHHHHhhccCCEEEEEc
Confidence            569997744433  47889999999999998765

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.54  E-value=0.00054  Score=56.71  Aligned_cols=102  Identities=17%  Similarity=0.168  Sum_probs=79.4

Q ss_pred             CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506          109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD  188 (237)
Q Consensus       109 ~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~  188 (237)
                      ..+|+|.-+|+|.=++.++...+. .+++.-|+||++++.+++|+..+...+ ......|+... +.. ....||+|=+|
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~-~~v~lNDisp~Avelik~Nv~~N~~~~-~~v~n~DAN~l-m~~-~~~~fd~IDiD  128 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGV-VKVVLNDISPKAVELIKENVRLNSGED-AEVINKDANAL-LHE-LHRAFDVIDID  128 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCc-cEEEEccCCHHHHHHHHHHHHhcCccc-ceeecchHHHH-HHh-cCCCccEEecC
Confidence            689999999999999988888644 489999999999999999999884444 44444666531 111 12679998888


Q ss_pred             C-CChhchHHHHHhcccCCCEEEEEeC
Q 026506          189 L-PQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       189 ~-~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      + +.|..++..+.+.++.||.+.+-.+
T Consensus       129 PFGSPaPFlDaA~~s~~~~G~l~vTAT  155 (380)
T COG1867         129 PFGSPAPFLDAALRSVRRGGLLCVTAT  155 (380)
T ss_pred             CCCCCchHHHHHHHHhhcCCEEEEEec
Confidence            6 4555699999999999999986654

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.53  E-value=9.1e-05  Score=59.06  Aligned_cols=104  Identities=18%  Similarity=0.191  Sum_probs=61.9

Q ss_pred             CCCCEEEEEccCccHHH-HHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC----------------C----------
Q 026506          107 VPGCLVLESGTGSGSLT-TSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV----------------S----------  159 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~-~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----------------~----------  159 (237)
                      ..|.++||+|||+-..- +.++..   ..+++..|..+.-++..++.+...+.                .          
T Consensus        55 ~~g~~llDiGsGPtiy~~lsa~~~---f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~l  131 (256)
T PF01234_consen   55 VKGETLLDIGSGPTIYQLLSACEW---FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKL  131 (256)
T ss_dssp             S-EEEEEEES-TT--GGGTTGGGT---EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHhhhhHHHh---hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence            45789999999994332 222222   36899999998888766665433211                0          


Q ss_pred             -CcE-EEEEccccCCC-CCC--CCCCCCCEEEEeC---------CChhchHHHHHhcccCCCEEEEEe
Q 026506          160 -SFV-TVGVRDIQGQG-FPD--EFSGLADSIFLDL---------PQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       160 -~~i-~~~~~d~~~~~-~~~--~~~~~~D~v~~~~---------~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                       ..+ ++...|+.+.+ +..  ...++||+|+...         .....+++++.++|||||.|++.+
T Consensus       132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~  199 (256)
T PF01234_consen  132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG  199 (256)
T ss_dssp             HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             HHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence             112 46678887632 222  1123599987532         233468999999999999998654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.52  E-value=0.00014  Score=62.06  Aligned_cols=111  Identities=22%  Similarity=0.237  Sum_probs=89.9

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCC-CCCCCCCCE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP-DEFSGLADS  184 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~~~D~  184 (237)
                      ..++-+|||.=+++|.-++..+..+++..++.+.|.+++.++..+.|++.++..+.++....|+...-+. ......||+
T Consensus       107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDv  186 (525)
T KOG1253|consen  107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDV  186 (525)
T ss_pred             ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccce
Confidence            3567799999999999999999998777899999999999999999999998888788888887541111 111267999


Q ss_pred             EEEeC-CChhchHHHHHhcccCCCEEEEEeCCH
Q 026506          185 IFLDL-PQPWLAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       185 v~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                      |=+|+ +.+..+|..+.+.++.||.|.+-.+..
T Consensus       187 IDLDPyGs~s~FLDsAvqav~~gGLL~vT~TD~  219 (525)
T KOG1253|consen  187 IDLDPYGSPSPFLDSAVQAVRDGGLLCVTCTDM  219 (525)
T ss_pred             EecCCCCCccHHHHHHHHHhhcCCEEEEEecch
Confidence            98887 455569999999999999999766543

>cd08293 PTGR2 Prostaglandin reductase

Probab=97.45  E-value=0.00074  Score=56.47  Aligned_cols=104  Identities=13%  Similarity=0.203  Sum_probs=67.7

Q ss_pred             hcCCCCC--CEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          103 YLELVPG--CLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       103 ~~~~~~~--~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      ..+++++  ++||..|+ |. |..++++++..+ ..++++++.+++..+.+++.   .|.+..+.....++.+ .+....
T Consensus       147 ~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G-~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~-~i~~~~  221 (345)
T cd08293         147 KGHITPGANQTMVVSGAAGACGSLAGQIGRLLG-CSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAE-RLRELC  221 (345)
T ss_pred             hccCCCCCCCEEEEECCCcHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHH-HHHHHC
Confidence            3446665  89999997 54 778888888863 23799999998888877663   4654323322222221 111111


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ..++|+|+-.....  .++.+.+.|+++|+++.++
T Consensus       222 ~~gvd~vid~~g~~--~~~~~~~~l~~~G~iv~~G  254 (345)
T cd08293         222 PEGVDVYFDNVGGE--ISDTVISQMNENSHIILCG  254 (345)
T ss_pred             CCCceEEEECCCcH--HHHHHHHHhccCCEEEEEe
Confidence            24699987544443  4688999999999999876

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=97.45  E-value=0.0028  Score=53.05  Aligned_cols=102  Identities=17%  Similarity=0.157  Sum_probs=62.3

Q ss_pred             HHhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          101 IMYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       101 ~~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      +....+.++.+||..|+ |. |..+.++++..+  .++++++.+. ..+.+++    .+... +.....+.... .....
T Consensus       170 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g--~~vi~~~~~~-~~~~~~~----~g~~~-~~~~~~~~~~~-~~~~~  240 (350)
T cd08274         170 LERAGVGAGETVLVTGASGGVGSALVQLAKRRG--AIVIAVAGAA-KEEAVRA----LGADT-VILRDAPLLAD-AKALG  240 (350)
T ss_pred             HhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcC--CEEEEEeCch-hhHHHHh----cCCeE-EEeCCCccHHH-HHhhC
Confidence            34556788999999998 55 777777888763  5677777544 5555543    45421 11110000000 11111


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ...+|+++.....  ..+..+.+.|+++|+++.++
T Consensus       241 ~~~~d~vi~~~g~--~~~~~~~~~l~~~G~~v~~g  273 (350)
T cd08274         241 GEPVDVVADVVGG--PLFPDLLRLLRPGGRYVTAG  273 (350)
T ss_pred             CCCCcEEEecCCH--HHHHHHHHHhccCCEEEEec
Confidence            2569998755443  36888999999999998664

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=97.44  E-value=6.3e-05  Score=60.23  Aligned_cols=96  Identities=22%  Similarity=0.265  Sum_probs=70.5

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL  187 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~  187 (237)
                      .+..|+|+-+|.|+++..+.-.. ++..|+++|.||..++..+.+++.+++..+..+..+|-.. .-+.   ..+|.|.+
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~a-gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~-~~~~---~~AdrVnL  268 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTA-GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRN-PKPR---LRADRVNL  268 (351)
T ss_pred             ccchhhhhhcccceEEeehhhcc-CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccc-cCcc---ccchheee
Confidence            45899999999999998554443 4589999999999999999999998877666677777653 2233   67899887


Q ss_pred             eC-CChhchHHHHHhcccCCCE
Q 026506          188 DL-PQPWLAIPSAKKMLKQDGI  208 (237)
Q Consensus       188 ~~-~~~~~~l~~~~~~L~~gG~  208 (237)
                      .. |...+---.+.++|+|.|-
T Consensus       269 GLlPSse~~W~~A~k~Lk~egg  290 (351)
T KOG1227|consen  269 GLLPSSEQGWPTAIKALKPEGG  290 (351)
T ss_pred             ccccccccchHHHHHHhhhcCC
Confidence            54 3333334456677776553

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=97.44  E-value=0.0017  Score=53.52  Aligned_cols=106  Identities=22%  Similarity=0.202  Sum_probs=61.5

Q ss_pred             HhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEE--eCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTF--DFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~v--D~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      ....+.++.+||..|+|. |..+.++++..+  .+++.+  +.+++..+.+++    .++.. +.....|+.+.......
T Consensus       158 ~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G--~~v~~~~~~~~~~~~~~~~~----~g~~~-~~~~~~~~~~~l~~~~~  230 (306)
T cd08258         158 ERSGIRPGDTVVVFGPGPIGLLAAQVAKLQG--ATVVVVGTEKDEVRLDVAKE----LGADA-VNGGEEDLAELVNEITD  230 (306)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEECCCCCHHHHHHHHH----hCCcc-cCCCcCCHHHHHHHHcC
Confidence            345677889999977655 666677777763  456665  334445555554    35432 11112222110000011


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCC
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      ...+|+++...+. ...+....+.|+++|+++.++..
T Consensus       231 ~~~vd~vld~~g~-~~~~~~~~~~l~~~G~~v~~g~~  266 (306)
T cd08258         231 GDGADVVIECSGA-VPALEQALELLRKGGRIVQVGIF  266 (306)
T ss_pred             CCCCCEEEECCCC-hHHHHHHHHHhhcCCEEEEEccc
Confidence            1469997655432 34788899999999999977653

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.43  E-value=0.004  Score=45.25  Aligned_cols=100  Identities=30%  Similarity=0.293  Sum_probs=63.8

Q ss_pred             EEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC--CCCCCCCCCCCCEEEEeC
Q 026506          112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLADSIFLDL  189 (237)
Q Consensus       112 vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~~~~D~v~~~~  189 (237)
                      ++|+|||+|... .+.........++++|.++.+++.++.......... +.+...|...  ..+...  ..+|++....
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~d~~~~~~  127 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGL-VDFVVADALGGVLPFEDS--ASFDLVISLL  127 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCc-eEEEEeccccCCCCCCCC--CceeEEeeee
Confidence            999999999977 333332111378889999999888555432211111 4666666653  223320  2689983322


Q ss_pred             CC----hhchHHHHHhcccCCCEEEEEeCC
Q 026506          190 PQ----PWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       190 ~~----~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      ..    ....+..+.+.++|+|.+++....
T Consensus       128 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  157 (257)
T COG0500         128 VLHLLPPAKALRELLRVLKPGGRLVLSDLL  157 (257)
T ss_pred             ehhcCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence            21    356899999999999998866543

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=97.42  E-value=0.00078  Score=56.29  Aligned_cols=104  Identities=14%  Similarity=0.144  Sum_probs=69.8

Q ss_pred             HhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cccCCCCCCCC
Q 026506          102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPDEF  178 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~  178 (237)
                      ...++++|++||..|+ |. |..+.++++..+  .+++++..+++..+.+++.   .|.+..++.... ++.+ .+....
T Consensus       145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G--~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~-~i~~~~  218 (338)
T cd08295         145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKG--CYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDA-ALKRYF  218 (338)
T ss_pred             HhcCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHH-HHHHhC
Confidence            3456889999999997 54 788888888863  5788888888888877763   355432332211 2221 111111


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .+++|+|+-....  ..+..+.+.|+++|+++.++
T Consensus       219 ~~gvd~v~d~~g~--~~~~~~~~~l~~~G~iv~~G  251 (338)
T cd08295         219 PNGIDIYFDNVGG--KMLDAVLLNMNLHGRIAACG  251 (338)
T ss_pred             CCCcEEEEECCCH--HHHHHHHHHhccCcEEEEec
Confidence            2569997754443  47889999999999999775

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.35  E-value=0.00094  Score=48.10  Aligned_cols=107  Identities=16%  Similarity=0.080  Sum_probs=73.7

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .++..+.-++..+.+|+|+|-|....+.++.  +.....++|+|+-.+..++-+..+.|......|..-|..+.++.+  
T Consensus        63 nVLSll~~n~~GklvDlGSGDGRiVlaaar~--g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d--  138 (199)
T KOG4058|consen   63 NVLSLLRGNPKGKLVDLGSGDGRIVLAAARC--GLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD--  138 (199)
T ss_pred             HHHHHccCCCCCcEEeccCCCceeehhhhhh--CCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc--
Confidence            3556666677779999999999998777766  246788999999999999998888888777888888877544433  


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEE
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILC  210 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~  210 (237)
                       -.+-+||....-...+-..+..-|..|..++
T Consensus       139 -y~~vviFgaes~m~dLe~KL~~E~p~nt~vv  169 (199)
T KOG4058|consen  139 -YRNVVIFGAESVMPDLEDKLRTELPANTRVV  169 (199)
T ss_pred             -cceEEEeehHHHHhhhHHHHHhhCcCCCeEE
Confidence             2233333221111223444555677777776

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.33  E-value=0.0026  Score=51.16  Aligned_cols=124  Identities=20%  Similarity=0.194  Sum_probs=78.4

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC-----------------------------
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG-----------------------------  157 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-----------------------------  157 (237)
                      +...+||.-|||-|.++..++..   .-.+.+.|.|-.|+-...-.+....                             
T Consensus        55 ~~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i  131 (270)
T PF07942_consen   55 RSKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI  131 (270)
T ss_pred             CCccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEe
Confidence            34579999999999999999987   3689999998877654433222100                             


Q ss_pred             ----------CCCcEEEEEccccCCCCCCCCCCCCCEEE----EeCCC-hhchHHHHHhcccCCCEEEEEeCCHH-----
Q 026506          158 ----------VSSFVTVGVRDIQGQGFPDEFSGLADSIF----LDLPQ-PWLAIPSAKKMLKQDGILCSFSPCIE-----  217 (237)
Q Consensus       158 ----------~~~~i~~~~~d~~~~~~~~~~~~~~D~v~----~~~~~-~~~~l~~~~~~L~~gG~l~~~~~~~~-----  217 (237)
                                ....+....+|+.+.-.+....+.||+|+    +|... -.++++.+.++|||||..+=++|-..     
T Consensus       132 PDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~  211 (270)
T PF07942_consen  132 PDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPM  211 (270)
T ss_pred             CCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCC
Confidence                      01123444556554211111125799885    45543 34789999999999998886655321     


Q ss_pred             ----------HHHHHHHHHHh-cCccc
Q 026506          218 ----------QVQRSCESLRL-NFTGK  233 (237)
Q Consensus       218 ----------~~~~~~~~l~~-~f~~v  233 (237)
                                ..+++.+.... ||..+
T Consensus       212 ~~~~~~sveLs~eEi~~l~~~~GF~~~  238 (270)
T PF07942_consen  212 SIPNEMSVELSLEEIKELIEKLGFEIE  238 (270)
T ss_pred             CCCCCcccCCCHHHHHHHHHHCCCEEE
Confidence                      24556666666 77643

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PHA01634 hypothetical protein

Probab=97.29  E-value=0.0027  Score=44.56  Aligned_cols=74  Identities=12%  Similarity=0.018  Sum_probs=54.1

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL  187 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~  187 (237)
                      .+.+|+|+|++.|..++.++..  ++..|+++|.++...+..+++.+.+.+-++. +...+     ++. .=+.||+..+
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~kl~k~~een~k~nnI~DK~-v~~~e-----W~~-~Y~~~Di~~i   98 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLR--GASFVVQYEKEEKLRKKWEEVCAYFNICDKA-VMKGE-----WNG-EYEDVDIFVM   98 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhc--CccEEEEeccCHHHHHHHHHHhhhheeeece-eeccc-----ccc-cCCCcceEEE
Confidence            4689999999999999888876  5689999999999999999987766432211 11122     221 1157999888


Q ss_pred             eCC
Q 026506          188 DLP  190 (237)
Q Consensus       188 ~~~  190 (237)
                      |..
T Consensus        99 DCe  101 (156)
T PHA01634         99 DCE  101 (156)
T ss_pred             Ecc
Confidence            765

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.27  E-value=0.0012  Score=52.03  Aligned_cols=75  Identities=25%  Similarity=0.298  Sum_probs=53.9

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..+..+|+|||||-=-++..+... .+...++++|++..++++....+...+..  .++...|... ..+.   ...|+.
T Consensus       103 ~~~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~-~~~~---~~~Dla  175 (251)
T PF07091_consen  103 IPPPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLS-DPPK---EPADLA  175 (251)
T ss_dssp             S---SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTT-SHTT---SEESEE
T ss_pred             CCCCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeec-cCCC---CCcchh
Confidence            455789999999998888776654 34579999999999999999998888754  6677778874 3333   568998


Q ss_pred             EE
Q 026506          186 FL  187 (237)
Q Consensus       186 ~~  187 (237)
                      ++
T Consensus       176 Ll  177 (251)
T PF07091_consen  176 LL  177 (251)
T ss_dssp             EE
T ss_pred             hH
Confidence            76

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.24  E-value=0.0022  Score=54.90  Aligned_cols=90  Identities=17%  Similarity=0.209  Sum_probs=63.9

Q ss_pred             CCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       107 ~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      .+|++|+.+|+|+ |......++..+  .+|+++|.++.+.+.|+.    .|..    ..  +.. ...     ..+|+|
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~G--a~ViV~d~d~~R~~~A~~----~G~~----~~--~~~-e~v-----~~aDVV  261 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQG--ARVIVTEVDPICALQAAM----EGYE----VM--TME-EAV-----KEGDIF  261 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECChhhHHHHHh----cCCE----Ec--cHH-HHH-----cCCCEE
Confidence            5799999999999 777777777653  479999999998888776    4532    11  111 111     347998


Q ss_pred             EEeCCChhchHHHH-HhcccCCCEEEEEeCC
Q 026506          186 FLDLPQPWLAIPSA-KKMLKQDGILCSFSPC  215 (237)
Q Consensus       186 ~~~~~~~~~~l~~~-~~~L~~gG~l~~~~~~  215 (237)
                      +....... .+... .+.+++||+++..+..
T Consensus       262 I~atG~~~-~i~~~~l~~mk~GgilvnvG~~  291 (413)
T cd00401         262 VTTTGNKD-IITGEHFEQMKDGAIVCNIGHF  291 (413)
T ss_pred             EECCCCHH-HHHHHHHhcCCCCcEEEEeCCC
Confidence            87655444 66665 9999999999877643

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.19  E-value=0.00066  Score=55.78  Aligned_cols=114  Identities=11%  Similarity=0.029  Sum_probs=66.4

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC--CCCCCCCCCCCCEE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLADSI  185 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~~~~D~v  185 (237)
                      ...+|||+|.|+|....+.-..++.-..++.+|.|+..-+..... ..+-..........|+..  ..++..  ..|+++
T Consensus       113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl-~~nv~t~~td~r~s~vt~dRl~lp~a--d~ytl~  189 (484)
T COG5459         113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTL-AENVSTEKTDWRASDVTEDRLSLPAA--DLYTLA  189 (484)
T ss_pred             CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHH-HhhcccccCCCCCCccchhccCCCcc--ceeehh
Confidence            346799999999987766655554445677788887655544332 222222212223334432  122221  346665


Q ss_pred             EE-e----CCC---hhchHHHHHhcccCCCEEEEEeCCHHHHHHHHH
Q 026506          186 FL-D----LPQ---PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCE  224 (237)
Q Consensus       186 ~~-~----~~~---~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~  224 (237)
                      +. |    ...   -...++.++.++.|||.++++.+.....-+.+.
T Consensus       190 i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~  236 (484)
T COG5459         190 IVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERIL  236 (484)
T ss_pred             hhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHH
Confidence            53 1    111   123789999999999999999876654433333

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=97.18  E-value=0.0032  Score=50.22  Aligned_cols=116  Identities=16%  Similarity=0.192  Sum_probs=79.4

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      -.|..|+.+|--- ..+++++ ..+-..++.++|+++..+++..+.++..|+.+ ++...-|+. .++|+...+.||+.+
T Consensus       151 L~gK~I~vvGDDD-Ltsia~a-Lt~mpk~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dlr-~plpe~~~~kFDvfi  226 (354)
T COG1568         151 LEGKEIFVVGDDD-LTSIALA-LTGMPKRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDLR-NPLPEDLKRKFDVFI  226 (354)
T ss_pred             cCCCeEEEEcCch-hhHHHHH-hcCCCceEEEEechHHHHHHHHHHHHHhCccc-hhheeehhc-ccChHHHHhhCCeee
Confidence            3578899998433 2222222 22334789999999999999999999999877 888999988 677776667899999


Q ss_pred             EeCCChhc----hHHHHHhcccCC---CEEEEEeCCHHHHHHHHHHHH
Q 026506          187 LDLPQPWL----AIPSAKKMLKQD---GILCSFSPCIEQVQRSCESLR  227 (237)
Q Consensus       187 ~~~~~~~~----~l~~~~~~L~~g---G~l~~~~~~~~~~~~~~~~l~  227 (237)
                      .|+|....    ++.+-...||.-   |++.+ +-.-.+..+|.+.=+
T Consensus       227 TDPpeTi~alk~FlgRGI~tLkg~~~aGyfgi-T~ressidkW~eiQr  273 (354)
T COG1568         227 TDPPETIKALKLFLGRGIATLKGEGCAGYFGI-TRRESSIDKWREIQR  273 (354)
T ss_pred             cCchhhHHHHHHHHhccHHHhcCCCccceEee-eeccccHHHHHHHHH
Confidence            99987653    445556677755   45442 222234566655433

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.14  E-value=0.0046  Score=56.63  Aligned_cols=119  Identities=21%  Similarity=0.277  Sum_probs=73.9

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHh------CC-----CcEEEEEeCCH---HHHHHH-----------HHHHHH-----c
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAV------AP-----TGHVYTFDFHE---QRAASA-----------REDFER-----T  156 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~------~~-----~~~v~~vD~~~---~~~~~a-----------~~~~~~-----~  156 (237)
                      +..-+|+|+|-|+|...+...+.+      .+     .-+++++|..|   +-+..+           ++..+.     .
T Consensus        56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  135 (662)
T PRK01747         56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP  135 (662)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence            344699999999999776665444      12     24789999654   222222           121111     1


Q ss_pred             CC------CC--cEEEEEccccCCCCCCCCCCCCCEEEEeCCCh------h--chHHHHHhcccCCCEEEEEeCCHHHHH
Q 026506          157 GV------SS--FVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP------W--LAIPSAKKMLKQDGILCSFSPCIEQVQ  220 (237)
Q Consensus       157 ~~------~~--~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~------~--~~l~~~~~~L~~gG~l~~~~~~~~~~~  220 (237)
                      |.      ..  .+++..+|+.+ .++.. ...+|++|+|.-.|      |  +++..+.+.++|||+++.|+.    ..
T Consensus       136 g~~~~~~~~~~~~l~l~~gd~~~-~~~~~-~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~----a~  209 (662)
T PRK01747        136 GCHRLLFDDGRVTLDLWFGDANE-LLPQL-DARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFTS----AG  209 (662)
T ss_pred             CceEEEecCCcEEEEEEecCHHH-HHHhc-cccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEeeh----HH
Confidence            21      01  24566688764 22221 14699999986433      3  689999999999999998874    34


Q ss_pred             HHHHHHHh-cCc
Q 026506          221 RSCESLRL-NFT  231 (237)
Q Consensus       221 ~~~~~l~~-~f~  231 (237)
                      .+.+.|.+ ||.
T Consensus       210 ~vr~~l~~~GF~  221 (662)
T PRK01747        210 FVRRGLQEAGFT  221 (662)
T ss_pred             HHHHHHHHcCCe
Confidence            45566666 775

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.07  E-value=0.0054  Score=49.10  Aligned_cols=107  Identities=17%  Similarity=0.161  Sum_probs=63.2

Q ss_pred             CCCEEEEEccCc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC-C-CC--C-----
Q 026506          108 PGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-G-FP--D-----  176 (237)
Q Consensus       108 ~~~~vldiG~G~--G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~~--~-----  176 (237)
                      .=...||||||-  -...-++++...+.++|.-+|.+|-.+..++..+....- ....++.+|+.+. . +.  .     
T Consensus        68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~l  146 (267)
T PF04672_consen   68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLL  146 (267)
T ss_dssp             ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC-
T ss_pred             CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcC
Confidence            345899999996  345667888888899999999999999999988765432 2377889998761 0 11  0     


Q ss_pred             CCCCCCCEEEE-------eCCChhchHHHHHhcccCCCEEEEEeCC
Q 026506          177 EFSGLADSIFL-------DLPQPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       177 ~~~~~~D~v~~-------~~~~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      .....+=+++.       |-.++..+++.+.+.|.||..|++.-.+
T Consensus       147 D~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t  192 (267)
T PF04672_consen  147 DFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT  192 (267)
T ss_dssp             -TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred             CCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence            01112223222       2246678999999999999999866433

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.07  E-value=0.0018  Score=53.88  Aligned_cols=97  Identities=26%  Similarity=0.361  Sum_probs=74.9

Q ss_pred             cccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC
Q 026506           92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG  171 (237)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~  171 (237)
                      +......+....+++.+|.+|+|..|.+|.-+.+++..+...++++++|.+..+.+..++.+...|... ++...+|+..
T Consensus       197 lqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~-~~~~~~df~~  275 (413)
T KOG2360|consen  197 LQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSI-VESVEGDFLN  275 (413)
T ss_pred             EechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCc-cccccccccC
Confidence            334444456778889999999999999999999999998778999999999999999999988888776 6666888876


Q ss_pred             CCCCCCCCCCCCEEEEeCC
Q 026506          172 QGFPDEFSGLADSIFLDLP  190 (237)
Q Consensus       172 ~~~~~~~~~~~D~v~~~~~  190 (237)
                      ...+... .....+++|++
T Consensus       276 t~~~~~~-~~v~~iL~Dps  293 (413)
T KOG2360|consen  276 TATPEKF-RDVTYILVDPS  293 (413)
T ss_pred             CCCcccc-cceeEEEeCCC
Confidence            3222211 23455666665

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=97.00  E-value=0.0073  Score=53.04  Aligned_cols=98  Identities=20%  Similarity=0.305  Sum_probs=64.3

Q ss_pred             CCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-ccccC-CC----------
Q 026506          107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV-RDIQG-QG----------  173 (237)
Q Consensus       107 ~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~-~~----------  173 (237)
                      .++.+++.+|+|. |..+..++..++  ..|+++|.+++.++.+++    .|... +.+.. .+... ..          
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~----lGa~~-v~v~~~e~g~~~~gYa~~~s~~~~  234 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQS----MGAEF-LELDFKEEGGSGDGYAKVMSEEFI  234 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCeE-EeccccccccccccceeecCHHHH
Confidence            4678999999999 777888888874  469999999998887776    34322 12111 00000 00          


Q ss_pred             ------CCCCCCCCCCEEEEeC-----CChhchHHHHHhcccCCCEEEEE
Q 026506          174 ------FPDEFSGLADSIFLDL-----PQPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       174 ------~~~~~~~~~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                            +.+ ....+|+||...     +.|.-..++..+.+|||+.++-+
T Consensus       235 ~~~~~~~~e-~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl  283 (511)
T TIGR00561       235 AAEMELFAA-QAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL  283 (511)
T ss_pred             HHHHHHHHH-HhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence                  110 014699997655     34444788899999999998844

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.98  E-value=0.021  Score=47.29  Aligned_cols=102  Identities=17%  Similarity=0.131  Sum_probs=64.0

Q ss_pred             cCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-ccccCCCCC-CCCCC
Q 026506          104 LELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV-RDIQGQGFP-DEFSG  180 (237)
Q Consensus       104 ~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~-~~~~~  180 (237)
                      ...+++.+++..|+|. |..+..++...  ..+++.++.+++..+.+++    .+....+.... .+... .+. ...+.
T Consensus       156 ~~~~~g~~vli~g~g~~g~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~-~~~~~~~~~  228 (336)
T cd08276         156 GPLKPGDTVLVQGTGGVSLFALQFAKAA--GARVIATSSSDEKLERAKA----LGADHVINYRTTPDWGE-EVLKLTGGR  228 (336)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEcCCcccCHHH-HHHHHcCCC
Confidence            4578899999887766 55666667665  3578999988888887765    24333122111 11111 010 01114


Q ss_pred             CCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       181 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ++|+++....  ...+..+.+.|+++|+++.++.
T Consensus       229 ~~d~~i~~~~--~~~~~~~~~~l~~~G~~v~~g~  260 (336)
T cd08276         229 GVDHVVEVGG--PGTLAQSIKAVAPGGVISLIGF  260 (336)
T ss_pred             CCcEEEECCC--hHHHHHHHHhhcCCCEEEEEcc
Confidence            6999875543  2367888999999999987653

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=96.97  E-value=0.0023  Score=54.13  Aligned_cols=96  Identities=22%  Similarity=0.229  Sum_probs=64.4

Q ss_pred             EEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeC-
Q 026506          111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDL-  189 (237)
Q Consensus       111 ~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~-  189 (237)
                      .+||||+|+|.++...++. + +-.++++|.-..|.+.|++....+|..++|+++..-..+...-.  ..+.|+++... 
T Consensus        69 ~vLdigtGTGLLSmMAvra-g-aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~--~~RadI~v~e~f  144 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRA-G-ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGG--SSRADIAVREDF  144 (636)
T ss_pred             EEEEccCCccHHHHHHHHh-c-CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecC--cchhhhhhHhhh
Confidence            6899999999999777766 3 45799999999999999999999999888888765443311110  02366654211 


Q ss_pred             ------CChhchHHHHHhcc-cCCCEEE
Q 026506          190 ------PQPWLAIPSAKKML-KQDGILC  210 (237)
Q Consensus       190 ------~~~~~~l~~~~~~L-~~gG~l~  210 (237)
                            ......++.+++.| ++|-+.+
T Consensus       145 dtEligeGalps~qhAh~~L~~~nc~~V  172 (636)
T KOG1501|consen  145 DTELIGEGALPSLQHAHDMLLVDNCKTV  172 (636)
T ss_pred             hhhhhccccchhHHHHHHHhcccCCeec
Confidence                  11223566666555 5555544

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.93  E-value=0.011  Score=46.59  Aligned_cols=85  Identities=18%  Similarity=0.153  Sum_probs=50.9

Q ss_pred             HHHhcCCCCCC--EEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH---HcCC-----CCcEEEEEccc
Q 026506          100 VIMYLELVPGC--LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE---RTGV-----SSFVTVGVRDI  169 (237)
Q Consensus       100 ~~~~~~~~~~~--~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~---~~~~-----~~~i~~~~~d~  169 (237)
                      +++..+++++.  +|||.-+|-|.-+..++.. |  ++|+++|.||-.....+.-+.   ....     ..+++++.+|.
T Consensus        65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~-G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~  141 (234)
T PF04445_consen   65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASL-G--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA  141 (234)
T ss_dssp             HHHHTT-BTTB---EEETT-TTSHHHHHHHHH-T----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred             HHHHhCCCCCCCCEEEECCCcchHHHHHHHcc-C--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence            66667777765  9999999999999888754 3  689999999987666554332   2111     13699999998


Q ss_pred             cCCCCCCCCCCCCCEEEEeC
Q 026506          170 QGQGFPDEFSGLADSIFLDL  189 (237)
Q Consensus       170 ~~~~~~~~~~~~~D~v~~~~  189 (237)
                      .+ -+. .....||+|++|+
T Consensus       142 ~~-~L~-~~~~s~DVVY~DP  159 (234)
T PF04445_consen  142 LE-YLR-QPDNSFDVVYFDP  159 (234)
T ss_dssp             CC-HCC-CHSS--SEEEE--
T ss_pred             HH-HHh-hcCCCCCEEEECC
Confidence            76 111 2227899999986

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=96.90  E-value=0.021  Score=46.02  Aligned_cols=100  Identities=24%  Similarity=0.224  Sum_probs=66.5

Q ss_pred             HHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       101 ~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      +....+.+++++|..|+|. |..+..+++..+. .++++++.+++..+.+++.    +..+.+.....+    ....   
T Consensus        90 ~~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~-~~vi~~~~~~~~~~~~~~~----g~~~~~~~~~~~----~~~~---  157 (277)
T cd08255          90 VRDAEPRLGERVAVVGLGLVGLLAAQLAKAAGA-REVVGVDPDAARRELAEAL----GPADPVAADTAD----EIGG---  157 (277)
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEECCCHHHHHHHHHc----CCCccccccchh----hhcC---
Confidence            3456778999999999877 7777788887643 3499999999888877663    411111111000    0111   


Q ss_pred             CCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       180 ~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ..+|+++...... ..+....+.|+++|+++.++
T Consensus       158 ~~~d~vl~~~~~~-~~~~~~~~~l~~~g~~~~~g  190 (277)
T cd08255         158 RGADVVIEASGSP-SALETALRLLRDRGRVVLVG  190 (277)
T ss_pred             CCCCEEEEccCCh-HHHHHHHHHhcCCcEEEEEe
Confidence            4699977554433 37788899999999998775

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PF04189 Gcd10p: Gcd10p family; InterPro: IPR007316 eIF-3 is a multisubunit complex that stimulates translation initiation in vitro at several different steps

Probab=96.87  E-value=0.049  Score=44.61  Aligned_cols=55  Identities=36%  Similarity=0.576  Sum_probs=44.8

Q ss_pred             CCCCCCEEEEEEcCCcEEEEEEcCCCeee-eccceeeccccccCCCCceEEeccCc
Q 026506           15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQ-NRFGAFKHSDWIGKPFGSMVFSNKGG   69 (237)
Q Consensus        15 ~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~g~~~~~~~~~   69 (237)
                      .+++||.|++..+.+..+.+.+.++.... .+.|.++..+++|.+||.++....+.
T Consensus         3 ~I~~gd~Vil~~~~~~~k~v~l~~~~~i~lGK~~sf~~~~lIG~pyg~tfEi~~~~   58 (299)
T PF04189_consen    3 IIQEGDYVILRLPSGNMKIVKLKPNKTISLGKFGSFPLNDLIGRPYGSTFEIQDDK   58 (299)
T ss_pred             CcCCCCEEEEEcCCCcEEEEEECCCCEEEecCCCcccHHHhcCCCCCcEEEEeCCC
Confidence            57999999999888888888999887666 46777889999999999887554433

This family corresponds to the gamma subunit of eIF3 [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=96.85  E-value=0.015  Score=47.30  Aligned_cols=110  Identities=17%  Similarity=0.082  Sum_probs=68.0

Q ss_pred             EEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCC
Q 026506          111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP  190 (237)
Q Consensus       111 ~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~  190 (237)
                      +++|+.||.|++...+...  +...++++|+++.+.+..+.|....       ...+|+.+..... ..+.+|+++.++|
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~~-------~~~~Di~~~~~~~-~~~~~D~l~~gpP   71 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPNK-------LIEGDITKIDEKD-FIPDIDLLTGGFP   71 (275)
T ss_pred             cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCCC-------CccCccccCchhh-cCCCCCEEEeCCC
Confidence            6899999999998777654  3467899999999999988875311       3455665422111 0256999998877


Q ss_pred             Chh---------------c---hHHHHHhcccCCCEEEEEeCC------HHHHHHHHHHHHh-cC
Q 026506          191 QPW---------------L---AIPSAKKMLKQDGILCSFSPC------IEQVQRSCESLRL-NF  230 (237)
Q Consensus       191 ~~~---------------~---~l~~~~~~L~~gG~l~~~~~~------~~~~~~~~~~l~~-~f  230 (237)
                      +..               .   .+-++.+.++|.=.++=.++.      ......+++.+++ |+
T Consensus        72 Cq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY  136 (275)
T cd00315          72 CQPFSIAGKRKGFEDTRGTLFFEIIRILKEKKPKYFLLENVKGLLTHDNGNTLKVILNTLEELGY  136 (275)
T ss_pred             ChhhhHHhhcCCCCCchHHHHHHHHHHHHhcCCCEEEEEcCcchhccCchHHHHHHHHHHHhCCc
Confidence            431               1   123344555666444422322      2335666677766 54

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=96.85  E-value=0.00022  Score=54.28  Aligned_cols=85  Identities=18%  Similarity=0.236  Sum_probs=60.0

Q ss_pred             CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-ccccCCCCCCCCCCCCCEEEE
Q 026506          109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV-RDIQGQGFPDEFSGLADSIFL  187 (237)
Q Consensus       109 ~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~~~~D~v~~  187 (237)
                      +.++||+|+|-|-.+..++...   .+|++.|.|..|....++.    +    .++.. .+..+.      +-++|+|.+
T Consensus       113 ~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~kk----~----ynVl~~~ew~~t------~~k~dli~c  175 (288)
T KOG3987|consen  113 PVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKKK----N----YNVLTEIEWLQT------DVKLDLILC  175 (288)
T ss_pred             CeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhhc----C----Cceeeehhhhhc------CceeehHHH
Confidence            4699999999999999988876   5799999998888776652    3    22211 122211      135888753


Q ss_pred             ----e-CCChhchHHHHHhcccC-CCEEE
Q 026506          188 ----D-LPQPWLAIPSAKKMLKQ-DGILC  210 (237)
Q Consensus       188 ----~-~~~~~~~l~~~~~~L~~-gG~l~  210 (237)
                          | .-++..+++.++.+|+| +|+++
T Consensus       176 lNlLDRc~~p~kLL~Di~~vl~psngrvi  204 (288)
T KOG3987|consen  176 LNLLDRCFDPFKLLEDIHLVLAPSNGRVI  204 (288)
T ss_pred             HHHHHhhcChHHHHHHHHHHhccCCCcEE
Confidence                1 34666789999999998 88766

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=96.82  E-value=0.0039  Score=54.02  Aligned_cols=98  Identities=21%  Similarity=0.249  Sum_probs=72.7

Q ss_pred             CCEEEEEccCccHHHHHHHHH---hCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          109 GCLVLESGTGSGSLTTSLARA---VAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       109 ~~~vldiG~G~G~~~~~~~~~---~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      -..|+.+|+|.|-+.....+.   .....+++++|-+|+++-..+. .....++++++++..|+....-+.   .+.|++
T Consensus       368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap~---eq~DI~  443 (649)
T KOG0822|consen  368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAPR---EQADII  443 (649)
T ss_pred             eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCch---hhccch
Confidence            346788999999887655433   3345789999999999888766 444566788999999998744332   679998


Q ss_pred             EEeC-------CChhchHHHHHhcccCCCEEE
Q 026506          186 FLDL-------PQPWLAIPSAKKMLKQDGILC  210 (237)
Q Consensus       186 ~~~~-------~~~~~~l~~~~~~L~~gG~l~  210 (237)
                      +...       .-..+.|..+.+.|||.|+.+
T Consensus       444 VSELLGSFGDNELSPECLDG~q~fLkpdgIsI  475 (649)
T KOG0822|consen  444 VSELLGSFGDNELSPECLDGAQKFLKPDGISI  475 (649)
T ss_pred             HHHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence            7422       233468999999999999877

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=96.67  E-value=0.013  Score=47.54  Aligned_cols=107  Identities=12%  Similarity=0.101  Sum_probs=80.4

Q ss_pred             HHHhcCCCCCCEEEEEccC-c-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTG-S-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE  177 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G-~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  177 (237)
                      +++..++++|++|+.-++. . |....++++..  .++|+++=-+++.++++++.   .|.+..+++...|+.+ .+.+.
T Consensus       142 Ll~igqpk~GetvvVSaAaGaVGsvvgQiAKlk--G~rVVGiaGg~eK~~~l~~~---lGfD~~idyk~~d~~~-~L~~a  215 (340)
T COG2130         142 LLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLK--GCRVVGIAGGAEKCDFLTEE---LGFDAGIDYKAEDFAQ-ALKEA  215 (340)
T ss_pred             HHHhcCCCCCCEEEEEecccccchHHHHHHHhh--CCeEEEecCCHHHHHHHHHh---cCCceeeecCcccHHH-HHHHH
Confidence            4455578999999887653 3 88888899874  58999999999999998875   4666667888777764 23322


Q ss_pred             CCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       178 ~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ...+.|+.|.|....  .++.+...|+..+++.+.+.
T Consensus       216 ~P~GIDvyfeNVGg~--v~DAv~~~ln~~aRi~~CG~  250 (340)
T COG2130         216 CPKGIDVYFENVGGE--VLDAVLPLLNLFARIPVCGA  250 (340)
T ss_pred             CCCCeEEEEEcCCch--HHHHHHHhhccccceeeeee
Confidence            336799999888764  67888888888888876543

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=96.59  E-value=0.039  Score=44.55  Aligned_cols=109  Identities=12%  Similarity=0.226  Sum_probs=65.8

Q ss_pred             HHHhcCCCCCCEEEEEccCc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC-
Q 026506          100 VIMYLELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-  176 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~--G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-  176 (237)
                      +-...++++|+.|+-=|+-+  |...+++++.++- ..+-.+ .+..-++.+++.++..|.+..+.  .....+..... 
T Consensus       152 L~dfv~L~~GD~vIQNganS~VG~~ViQlaka~Gi-ktinvV-RdR~~ieel~~~Lk~lGA~~ViT--eeel~~~~~~k~  227 (354)
T KOG0025|consen  152 LKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGI-KTINVV-RDRPNIEELKKQLKSLGATEVIT--EEELRDRKMKKF  227 (354)
T ss_pred             HHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCc-ceEEEe-ecCccHHHHHHHHHHcCCceEec--HHHhcchhhhhh
Confidence            34566889999999988877  6678889988743 344433 34455777788888888765222  11111100000 


Q ss_pred             -CCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          177 -EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       177 -~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                       ....+.-+.+-+....  .-.++.+.|..||.++.|+-
T Consensus       228 ~~~~~~prLalNcVGGk--sa~~iar~L~~GgtmvTYGG  264 (354)
T KOG0025|consen  228 KGDNPRPRLALNCVGGK--SATEIARYLERGGTMVTYGG  264 (354)
T ss_pred             hccCCCceEEEeccCch--hHHHHHHHHhcCceEEEecC
Confidence             0012344444444433  34667889999999997753

>PRK11524 putative methyltransferase; Provisional

Probab=96.58  E-value=0.0077  Score=49.23  Aligned_cols=47  Identities=13%  Similarity=0.129  Sum_probs=40.1

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER  155 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~  155 (237)
                      -.+|+.|||..+|+|..+.+..+.   ..+.+++|++++.++.|++++..
T Consensus       206 S~~GD~VLDPF~GSGTT~~AA~~l---gR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        206 SNPGDIVLDPFAGSFTTGAVAKAS---GRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             CCCCCEEEECCCCCcHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh
Confidence            478999999999999988665544   47899999999999999999753

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.57  E-value=0.0061  Score=47.34  Aligned_cols=113  Identities=18%  Similarity=0.110  Sum_probs=68.1

Q ss_pred             CCEEEEEccCccHHHHHHHHHhCC----C----cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCC----C
Q 026506          109 GCLVLESGTGSGSLTTSLARAVAP----T----GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP----D  176 (237)
Q Consensus       109 ~~~vldiG~G~G~~~~~~~~~~~~----~----~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~----~  176 (237)
                      -.+++|+++.+|.++..+++.+..    .    .+++++|+.+-           ..++. +.-.++|+....-.    .
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~G-V~qlq~DIT~~stae~Ii~  109 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEG-VIQLQGDITSASTAEAIIE  109 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccCc-eEEeecccCCHhHHHHHHH
Confidence            358999999999999998887632    1    23999998541           13334 55567787651111    1


Q ss_pred             C-CCCCCCEEEEeCCCh----------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHhcCccc
Q 026506          177 E-FSGLADSIFLDLPQP----------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGK  233 (237)
Q Consensus       177 ~-~~~~~D~v~~~~~~~----------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~v  233 (237)
                      . .+...|+|++|....                ..+|.-...+|+|||.++.-.--......+...|+.-|..|
T Consensus       110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLysql~~ff~kv  183 (294)
T KOG1099|consen  110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLYSQLRKFFKKV  183 (294)
T ss_pred             HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHHHHHHHHHhhce
Confidence            1 124799999875422                13566678899999999833222222333333444334444

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=96.52  E-value=0.014  Score=48.47  Aligned_cols=99  Identities=10%  Similarity=0.009  Sum_probs=60.8

Q ss_pred             CCCEEEEE--ccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          108 PGCLVLES--GTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       108 ~~~~vldi--G~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      ++..++.+  |+|. |..+.++++..+  .++++++.+++..+.+++    .|.+..+.....++.+.......+.++|+
T Consensus       142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G--~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~v~~~~~~~~~d~  215 (324)
T cd08291         142 EGAKAVVHTAAASALGRMLVRLCKADG--IKVINIVRRKEQVDLLKK----IGAEYVLNSSDPDFLEDLKELIAKLNATI  215 (324)
T ss_pred             CCCcEEEEccCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCCcEEEECCCccHHHHHHHHhCCCCCcE
Confidence            45555554  6666 777778888763  579999999988888876    46543233222222210000011146999


Q ss_pred             EEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          185 IFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       185 v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ++......  ......+.++++|+++.++.
T Consensus       216 vid~~g~~--~~~~~~~~l~~~G~~v~~g~  243 (324)
T cd08291         216 FFDAVGGG--LTGQILLAMPYGSTLYVYGY  243 (324)
T ss_pred             EEECCCcH--HHHHHHHhhCCCCEEEEEEe
Confidence            87554432  45667889999999988763

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=96.31  E-value=0.11  Score=40.20  Aligned_cols=114  Identities=15%  Similarity=0.126  Sum_probs=69.2

Q ss_pred             ccccHHHHHHhcCCCCCCEEEEEccCcc----HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q 026506           93 YIADISFVIMYLELVPGCLVLESGTGSG----SLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD  168 (237)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~vldiG~G~G----~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d  168 (237)
                      .|....++...+.=.....+++..++.|    .+++..|.+- ..++++.+-.+++.+...++.+...+..+..+|..++
T Consensus        26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~-TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~  104 (218)
T PF07279_consen   26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQ-TGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGE  104 (218)
T ss_pred             CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHh-cCCeEEEEcCChhhHHHHHHHHhhccccccceEEecC
Confidence            4444444545544455678888866543    2333334432 4578888888888777777777767776657888887


Q ss_pred             ccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhccc--CCCEEE
Q 026506          169 IQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLK--QDGILC  210 (237)
Q Consensus       169 ~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~--~gG~l~  210 (237)
                      ..+..++..  ..+|.+++|.... +..+++++.++  |.|-++
T Consensus       105 ~~e~~~~~~--~~iDF~vVDc~~~-d~~~~vl~~~~~~~~GaVV  145 (218)
T PF07279_consen  105 APEEVMPGL--KGIDFVVVDCKRE-DFAARVLRAAKLSPRGAVV  145 (218)
T ss_pred             CHHHHHhhc--cCCCEEEEeCCch-hHHHHHHHHhccCCCceEE
Confidence            543223222  4699999998643 24445555554  445544

The function of this family is unknown.

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=96.31  E-value=0.0083  Score=46.88  Aligned_cols=43  Identities=21%  Similarity=0.317  Sum_probs=33.0

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASARE  151 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~  151 (237)
                      ..+|+.|||..+|+|..+.+....   +.+.+++|++++..+.|++
T Consensus       189 t~~gdiVlDpF~GSGTT~~aa~~l---~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  189 TNPGDIVLDPFAGSGTTAVAAEEL---GRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             S-TT-EEEETT-TTTHHHHHHHHT---T-EEEEEESSHHHHHHHHH
T ss_pred             hccceeeehhhhccChHHHHHHHc---CCeEEEEeCCHHHHHHhcC
Confidence            477999999999999988665554   4789999999999998864

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=96.29  E-value=0.024  Score=46.88  Aligned_cols=102  Identities=17%  Similarity=0.234  Sum_probs=65.5

Q ss_pred             cCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCC
Q 026506          104 LELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL  181 (237)
Q Consensus       104 ~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  181 (237)
                      ....++.+||..|+ |. |..+.++++..+  .++++++.++...+.+++.   .+....+.....++.. .+.....+.
T Consensus       141 ~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~-~v~~~~~~~  214 (329)
T cd05288         141 GKPKPGETVVVSAAAGAVGSVVGQIAKLLG--ARVVGIAGSDEKCRWLVEE---LGFDAAINYKTPDLAE-ALKEAAPDG  214 (329)
T ss_pred             cCCCCCCEEEEecCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhh---cCCceEEecCChhHHH-HHHHhccCC
Confidence            45678899999984 54 777777888753  5799999888887777653   3433222222212211 011111146


Q ss_pred             CCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          182 ADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       182 ~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +|+++.....  ..+..+.+.++++|+++.++
T Consensus       215 ~d~vi~~~g~--~~~~~~~~~l~~~G~~v~~g  244 (329)
T cd05288         215 IDVYFDNVGG--EILDAALTLLNKGGRIALCG  244 (329)
T ss_pred             ceEEEEcchH--HHHHHHHHhcCCCceEEEEe
Confidence            9997754443  37888999999999998765

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=96.28  E-value=0.0057  Score=52.60  Aligned_cols=106  Identities=17%  Similarity=0.173  Sum_probs=72.6

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC---CCCC-CCCCCCCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG---QGFP-DEFSGLAD  183 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~-~~~~~~~D  183 (237)
                      .+..+|.+|-|+|.+...+...+ +..++++++++|++++.|++++....-. +..+...|..+   .... ......||
T Consensus       295 ~~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~d  372 (482)
T KOG2352|consen  295 TGGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPD  372 (482)
T ss_pred             ccCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHHHhhccccccCCc
Confidence            45678999999999988777776 4578999999999999999987543222 23444444433   1010 01225799


Q ss_pred             EEEEeCCCh--------------hchHHHHHhcccCCCEEEEEeCC
Q 026506          184 SIFLDLPQP--------------WLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       184 ~v~~~~~~~--------------~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      +++.|....              ..++..+...|.|.|.+++...+
T Consensus       373 vl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~  418 (482)
T KOG2352|consen  373 VLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVT  418 (482)
T ss_pred             EEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEec
Confidence            998764311              24688889999999998866543

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=96.26  E-value=0.0053  Score=49.20  Aligned_cols=97  Identities=19%  Similarity=0.183  Sum_probs=69.4

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      ..+..++|+|||-|-.+..     .+...+++.|++...+.-+++.    +-   ......|+...++..   .+||.++
T Consensus        44 ~~gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~~l~~~ak~~----~~---~~~~~ad~l~~p~~~---~s~d~~l  108 (293)
T KOG1331|consen   44 PTGSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCTGLLGGAKRS----GG---DNVCRADALKLPFRE---ESFDAAL  108 (293)
T ss_pred             CCcceeeecccCCcccCcC-----CCcceeeecchhhhhccccccC----CC---ceeehhhhhcCCCCC---Cccccch
Confidence            3488999999999866521     2456799999998888877652    21   256778888766665   7888865


Q ss_pred             EeC--------CChhchHHHHHhcccCCCEEEEEeCCHHH
Q 026506          187 LDL--------PQPWLAIPSAKKMLKQDGILCSFSPCIEQ  218 (237)
Q Consensus       187 ~~~--------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  218 (237)
                      .-.        .....+++++.+.|+|||...+|+-...+
T Consensus       109 siavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q  148 (293)
T KOG1331|consen  109 SIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALEQ  148 (293)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhhc
Confidence            321        12236899999999999998878754443

>PRK13699 putative methylase; Provisional

Probab=96.24  E-value=0.019  Score=45.27  Aligned_cols=48  Identities=19%  Similarity=0.275  Sum_probs=40.6

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT  156 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~  156 (237)
                      ..+|+.|||..||+|..+.+..+.   ..+.+++|++++..+.+.+++...
T Consensus       161 s~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        161 THPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHH
Confidence            468999999999999988665554   478999999999999999987653

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=96.16  E-value=0.018  Score=45.90  Aligned_cols=120  Identities=18%  Similarity=0.167  Sum_probs=66.4

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHh---C-CCcEEEEEeCC--------------------------HHHHHHHHHHHHHc
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAV---A-PTGHVYTFDFH--------------------------EQRAASAREDFERT  156 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~---~-~~~~v~~vD~~--------------------------~~~~~~a~~~~~~~  156 (237)
                      .-...++|+|+-.|+.++.++..+   + ...+++++|.=                          .-..+..++++...
T Consensus        73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~  152 (248)
T PF05711_consen   73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY  152 (248)
T ss_dssp             TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred             CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence            344689999999998776654433   2 34689999831                          11344555555555


Q ss_pred             CC-CCcEEEEEccccCCCCCCCCCCCCCEEEEeCCCh---hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHH
Q 026506          157 GV-SSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP---WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLR  227 (237)
Q Consensus       157 ~~-~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~---~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~  227 (237)
                      ++ +.++.++.+.+.+ .++.....++-++.+|..-.   ...|+.++..|.|||++++-.-......+.....+
T Consensus       153 gl~~~~v~~vkG~F~d-TLp~~p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY~~~gcr~AvdeF~  226 (248)
T PF05711_consen  153 GLLDDNVRFVKGWFPD-TLPDAPIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDDYGHPGCRKAVDEFR  226 (248)
T ss_dssp             TTSSTTEEEEES-HHH-HCCC-TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESSTTTHHHHHHHHHHH
T ss_pred             CCCcccEEEECCcchh-hhccCCCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeCCCChHHHHHHHHHH
Confidence            53 3459999999874 34432224555555666533   36799999999999999966543333333333333

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=96.15  E-value=0.029  Score=46.28  Aligned_cols=104  Identities=19%  Similarity=0.242  Sum_probs=63.1

Q ss_pred             HHhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCC-CC
Q 026506          101 IMYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP-DE  177 (237)
Q Consensus       101 ~~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~  177 (237)
                      +....+.++.+||..|+ |. |..+.++++.++  .+++.+..+++..+.+++    .+.+..+.....++.. .+. ..
T Consensus       132 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~-~i~~~~  204 (324)
T cd08292         132 LDFLGVKPGQWLIQNAAGGAVGKLVAMLAAARG--INVINLVRRDAGVAELRA----LGIGPVVSTEQPGWQD-KVREAA  204 (324)
T ss_pred             HHhhCCCCCCEEEEcccccHHHHHHHHHHHHCC--CeEEEEecCHHHHHHHHh----cCCCEEEcCCCchHHH-HHHHHh
Confidence            34467788999999986 44 777788888863  466666656666665554    3543211111111110 000 01


Q ss_pred             CCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       178 ~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .+.++|+|+......  .+..+.+.|+++|+++.++
T Consensus       205 ~~~~~d~v~d~~g~~--~~~~~~~~l~~~g~~v~~g  238 (324)
T cd08292         205 GGAPISVALDSVGGK--LAGELLSLLGEGGTLVSFG  238 (324)
T ss_pred             CCCCCcEEEECCCCh--hHHHHHHhhcCCcEEEEEe
Confidence            114699988554442  5688899999999998775

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=96.15  E-value=0.042  Score=47.47  Aligned_cols=100  Identities=16%  Similarity=0.153  Sum_probs=72.2

Q ss_pred             CCCC-EEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          107 VPGC-LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       107 ~~~~-~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ++-. +++.+|||---+..++.+.  +...++.+|+|+..++.....-. ..... +.+...|.....++.   ..||+|
T Consensus        46 ~p~~~~~l~lGCGNS~l~e~ly~~--G~~dI~~iD~S~V~V~~m~~~~~-~~~~~-~~~~~~d~~~l~fed---ESFdiV  118 (482)
T KOG2352|consen   46 SPSDFKILQLGCGNSELSEHLYKN--GFEDITNIDSSSVVVAAMQVRNA-KERPE-MQMVEMDMDQLVFED---ESFDIV  118 (482)
T ss_pred             chhhceeEeecCCCCHHHHHHHhc--CCCCceeccccHHHHHHHHhccc-cCCcc-eEEEEecchhccCCC---cceeEE
Confidence            4445 9999999998888776654  45789999999999888766432 11222 678888888777877   788887


Q ss_pred             EE---------eCCChh------chHHHHHhcccCCCEEEEEe
Q 026506          186 FL---------DLPQPW------LAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       186 ~~---------~~~~~~------~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +.         +....+      ..+.++++.+++||+.+.++
T Consensus       119 IdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt  161 (482)
T KOG2352|consen  119 IDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT  161 (482)
T ss_pred             EecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence            64         111222      35788999999999977554

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=96.14  E-value=0.033  Score=45.62  Aligned_cols=104  Identities=25%  Similarity=0.194  Sum_probs=63.9

Q ss_pred             HhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCC-CCC
Q 026506          102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGH-VYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP-DEF  178 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~  178 (237)
                      ....+.++.+++..|+|. |..+..+++..+  .+ ++++..+++..+.+++    .++...+.....+..+ .+. ...
T Consensus       123 ~~~~~~~~~~vlI~g~g~vg~~~~~la~~~g--~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~-~l~~~~~  195 (312)
T cd08269         123 RRGWIRAGKTVAVIGAGFIGLLFLQLAAAAG--ARRVIAIDRRPARLALARE----LGATEVVTDDSEAIVE-RVRELTG  195 (312)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----hCCceEecCCCcCHHH-HHHHHcC
Confidence            355678899999998766 666777777763  45 8888888877775543    4543211111111111 010 011


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +.++|+++..... ...+....+.|+++|+++.++
T Consensus       196 ~~~vd~vld~~g~-~~~~~~~~~~l~~~g~~~~~g  229 (312)
T cd08269         196 GAGADVVIEAVGH-QWPLDLAGELVAERGRLVIFG  229 (312)
T ss_pred             CCCCCEEEECCCC-HHHHHHHHHHhccCCEEEEEc
Confidence            1469997755433 336788899999999999775

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=96.13  E-value=0.034  Score=45.32  Aligned_cols=103  Identities=22%  Similarity=0.230  Sum_probs=64.8

Q ss_pred             hcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506          103 YLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG  180 (237)
Q Consensus       103 ~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  180 (237)
                      ...+.++.+||..|+ |. |..+..++...+  .++++++.+++..+.+++    .+....+.....+..........+.
T Consensus       131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~  204 (320)
T cd05286         131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALG--ATVIGTVSSEEKAELARA----AGADHVINYRDEDFVERVREITGGR  204 (320)
T ss_pred             hcCCCCCCEEEEEcCCchHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH----CCCCEEEeCCchhHHHHHHHHcCCC
Confidence            356778999999994 54 777777787763  578888888888877754    4543211111111111000001114


Q ss_pred             CCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       181 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .+|+++.....  ..+..+.+.|+++|+++.++
T Consensus       205 ~~d~vl~~~~~--~~~~~~~~~l~~~g~~v~~g  235 (320)
T cd05286         205 GVDVVYDGVGK--DTFEGSLDSLRPRGTLVSFG  235 (320)
T ss_pred             CeeEEEECCCc--HhHHHHHHhhccCcEEEEEe
Confidence            69998755443  36788899999999998764

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=96.10  E-value=0.021  Score=48.00  Aligned_cols=81  Identities=14%  Similarity=0.087  Sum_probs=56.1

Q ss_pred             CCCCCCEEEEEccCc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCC
Q 026506          105 ELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA  182 (237)
Q Consensus       105 ~~~~~~~vldiG~G~--G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  182 (237)
                      +.++|..||.+|.++  |..++++|+..+  ...++.-.+.+.++.+++    +|.+..+++...|+.+...... ..+|
T Consensus       154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~--~~~v~t~~s~e~~~l~k~----lGAd~vvdy~~~~~~e~~kk~~-~~~~  226 (347)
T KOG1198|consen  154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAG--AIKVVTACSKEKLELVKK----LGADEVVDYKDENVVELIKKYT-GKGV  226 (347)
T ss_pred             ccCCCCeEEEEeCCcHHHHHHHHHHHhcC--CcEEEEEcccchHHHHHH----cCCcEeecCCCHHHHHHHHhhc-CCCc
Confidence            578899999998877  567788888864  245555667888888877    5777667777666664322221 3689


Q ss_pred             CEEEEeCCCh
Q 026506          183 DSIFLDLPQP  192 (237)
Q Consensus       183 D~v~~~~~~~  192 (237)
                      |+|+-.....
T Consensus       227 DvVlD~vg~~  236 (347)
T KOG1198|consen  227 DVVLDCVGGS  236 (347)
T ss_pred             cEEEECCCCC
Confidence            9977655543

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=96.04  E-value=0.16  Score=40.44  Aligned_cols=106  Identities=16%  Similarity=0.031  Sum_probs=60.1

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-----CCCCcEEEEEccccCCCCCCCCCCC-
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-----GVSSFVTVGVRDIQGQGFPDEFSGL-  181 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----~~~~~i~~~~~d~~~~~~~~~~~~~-  181 (237)
                      ....||++|+|+|..++.++...  ..++...|. +..++..+.+...+     .....+.+...+...........+. 
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~-~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~  162 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLL--GAEVVLTDL-PKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNP  162 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHh--cceeccCCc-hhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCc
Confidence            46789999999997776666653  467888886 44444444443222     2222355555444431111111133 


Q ss_pred             CCEEEEe-----CCChhchHHHHHhcccCCCEEEEEeCCH
Q 026506          182 ADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       182 ~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                      +|+|+..     ...+..++..+...|..++++++..+-.
T Consensus       163 ~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr  202 (248)
T KOG2793|consen  163 FDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLR  202 (248)
T ss_pred             ccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEecc
Confidence            8988742     2233346777788888888665555443

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.04  E-value=0.019  Score=44.28  Aligned_cols=105  Identities=20%  Similarity=0.210  Sum_probs=58.5

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHc-----------------------------
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAP-TGHVYTFDFHEQRAASAREDFERT-----------------------------  156 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~-----------------------------  156 (237)
                      ..+-++.|-+||+|++...+.-..+. -..|++.|+++++++.|++|+...                             
T Consensus        50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~  129 (246)
T PF11599_consen   50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE  129 (246)
T ss_dssp             -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred             CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence            44569999999999987666544322 268999999999999998884211                             


Q ss_pred             ------------CCCCcEEEEEccccCCCCC--CCCCCCCCEEEEeCC----Chh----------chHHHHHhcccCCCE
Q 026506          157 ------------GVSSFVTVGVRDIQGQGFP--DEFSGLADSIFLDLP----QPW----------LAIPSAKKMLKQDGI  208 (237)
Q Consensus       157 ------------~~~~~i~~~~~d~~~~~~~--~~~~~~~D~v~~~~~----~~~----------~~l~~~~~~L~~gG~  208 (237)
                                  |-.....+...|+++....  .......|+|+.|.|    ..|          ..|+.+...|.++++
T Consensus       130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV  209 (246)
T PF11599_consen  130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV  209 (246)
T ss_dssp             HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred             HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence                        1112255667777651110  001134799999876    122          468999999955555


Q ss_pred             EEE
Q 026506          209 LCS  211 (237)
Q Consensus       209 l~~  211 (237)
                      +++
T Consensus       210 V~v  212 (246)
T PF11599_consen  210 VAV  212 (246)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=96.02  E-value=0.0053  Score=54.10  Aligned_cols=91  Identities=18%  Similarity=0.228  Sum_probs=60.2

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC----C---CCCCC
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ----G---FPDEF  178 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~---~~~~~  178 (237)
                      +.++..|||+||.+|++....+..++.++-|+++|+-|-           ..+++ +...+.|+...    .   .... 
T Consensus        42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi-----------kp~~~-c~t~v~dIttd~cr~~l~k~l~t-  108 (780)
T KOG1098|consen   42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI-----------KPIPN-CDTLVEDITTDECRSKLRKILKT-  108 (780)
T ss_pred             ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec-----------ccCCc-cchhhhhhhHHHHHHHHHHHHHh-
Confidence            578899999999999999888888877788999998552           12223 33333444321    0   0111 


Q ss_pred             CCCCCEEEEeCCCh----h------------chHHHHHhcccCCCEEE
Q 026506          179 SGLADSIFLDLPQP----W------------LAIPSAKKMLKQDGILC  210 (237)
Q Consensus       179 ~~~~D~v~~~~~~~----~------------~~l~~~~~~L~~gG~l~  210 (237)
                       -..|+|++|....    |            ..+..+...|..||.++
T Consensus       109 -~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv  155 (780)
T KOG1098|consen  109 -WKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFV  155 (780)
T ss_pred             -CCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc
Confidence             2469988875422    2            24566678888999976

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.00  E-value=0.046  Score=46.80  Aligned_cols=90  Identities=19%  Similarity=0.202  Sum_probs=60.4

Q ss_pred             CCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       107 ~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..|.+|+.+|+|. |......++.+  ..+|+++|.++.....++.    .|.    .+.  +.. ..+     ...|+|
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~~----~G~----~v~--~le-eal-----~~aDVV  254 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGM--GARVIVTEVDPIRALEAAM----DGF----RVM--TME-EAA-----KIGDIF  254 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhC--cCEEEEEeCChhhHHHHHh----cCC----EeC--CHH-HHH-----hcCCEE
Confidence            5789999999999 76676677765  3589999999876544443    242    111  221 111     347998


Q ss_pred             EEeCCChhchHH-HHHhcccCCCEEEEEeCC
Q 026506          186 FLDLPQPWLAIP-SAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       186 ~~~~~~~~~~l~-~~~~~L~~gG~l~~~~~~  215 (237)
                      +...+... .+. .....+|+|++++..+-.
T Consensus       255 ItaTG~~~-vI~~~~~~~mK~GailiN~G~~  284 (406)
T TIGR00936       255 ITATGNKD-VIRGEHFENMKDGAIVANIGHF  284 (406)
T ss_pred             EECCCCHH-HHHHHHHhcCCCCcEEEEECCC
Confidence            76655443 555 488899999999977643

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=96.00  E-value=0.061  Score=44.09  Aligned_cols=100  Identities=25%  Similarity=0.320  Sum_probs=65.9

Q ss_pred             cCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCC
Q 026506          104 LELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL  181 (237)
Q Consensus       104 ~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  181 (237)
                      ....++++||..|+ |. |..+.++++..+  .+++++..+++..+.+++    .|++. +.....++.+ .+... +.+
T Consensus       138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~~-~~~~~~~~~~-~i~~~-~~~  208 (320)
T cd08243         138 LGLQPGDTLLIRGGTSSVGLAALKLAKALG--ATVTATTRSPERAALLKE----LGADE-VVIDDGAIAE-QLRAA-PGG  208 (320)
T ss_pred             cCCCCCCEEEEEcCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----cCCcE-EEecCccHHH-HHHHh-CCC
Confidence            34778999999997 44 778888888863  568888888887777754    45432 2111112111 11111 257


Q ss_pred             CCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          182 ADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       182 ~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +|+++.....  ..+..+.+.|+++|+++.++.
T Consensus       209 ~d~vl~~~~~--~~~~~~~~~l~~~g~~v~~g~  239 (320)
T cd08243         209 FDKVLELVGT--ATLKDSLRHLRPGGIVCMTGL  239 (320)
T ss_pred             ceEEEECCCh--HHHHHHHHHhccCCEEEEEcc
Confidence            9998755443  378889999999999987653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=95.81  E-value=0.062  Score=44.26  Aligned_cols=106  Identities=22%  Similarity=0.176  Sum_probs=66.3

Q ss_pred             HHhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          101 IMYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       101 ~~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      ......+++.+|+..|+ |. |..+..+++..+  .++++++.+++..+.+++    .+....+.....+..........
T Consensus       135 ~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g--~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~  208 (324)
T cd08244         135 LDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAG--ATVVGAAGGPAKTALVRA----LGADVAVDYTRPDWPDQVREALG  208 (324)
T ss_pred             HHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCCEEEecCCccHHHHHHHHcC
Confidence            34456788999999985 44 777778888863  578999988888877754    35432122111121110000011


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +..+|+++......  ..+.+.+.|+++|+++.++.
T Consensus       209 ~~~~d~vl~~~g~~--~~~~~~~~l~~~g~~v~~g~  242 (324)
T cd08244         209 GGGVTVVLDGVGGA--IGRAALALLAPGGRFLTYGW  242 (324)
T ss_pred             CCCceEEEECCChH--hHHHHHHHhccCcEEEEEec
Confidence            14699987555443  45888999999999987753

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=95.77  E-value=0.058  Score=46.50  Aligned_cols=90  Identities=19%  Similarity=0.228  Sum_probs=60.3

Q ss_pred             CCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       107 ~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..|.+|+.+|+|. |......++.++  .+|+++|.++.....+..    .|.    ++.  +.. ..+     ..+|+|
T Consensus       210 l~Gk~VlViG~G~IG~~vA~~lr~~G--a~ViV~d~dp~ra~~A~~----~G~----~v~--~l~-eal-----~~aDVV  271 (425)
T PRK05476        210 IAGKVVVVAGYGDVGKGCAQRLRGLG--ARVIVTEVDPICALQAAM----DGF----RVM--TME-EAA-----ELGDIF  271 (425)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCchhhHHHHh----cCC----Eec--CHH-HHH-----hCCCEE
Confidence            3789999999999 666666676653  589999999876544433    232    111  221 111     358998


Q ss_pred             EEeCCChhchHH-HHHhcccCCCEEEEEeCC
Q 026506          186 FLDLPQPWLAIP-SAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       186 ~~~~~~~~~~l~-~~~~~L~~gG~l~~~~~~  215 (237)
                      +....... .+. .....+|+|++++..+..
T Consensus       272 I~aTG~~~-vI~~~~~~~mK~GailiNvG~~  301 (425)
T PRK05476        272 VTATGNKD-VITAEHMEAMKDGAILANIGHF  301 (425)
T ss_pred             EECCCCHH-HHHHHHHhcCCCCCEEEEcCCC
Confidence            76654443 565 688999999999877644

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.77  E-value=0.089  Score=36.49  Aligned_cols=97  Identities=21%  Similarity=0.170  Sum_probs=61.0

Q ss_pred             EEEEccCccHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCCCCCCCCCEEEEeC
Q 026506          112 VLESGTGSGSLTTSLARAVAPTG-HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLADSIFLDL  189 (237)
Q Consensus       112 vldiG~G~G~~~~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~~D~v~~~~  189 (237)
                      |+.+|+|  .++..+++.+.... .++.+|.+++..+.+++.    +    +.+..+|..+.. +....-..+|.+++..
T Consensus         1 vvI~G~g--~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~   70 (116)
T PF02254_consen    1 VVIIGYG--RIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G----VEVIYGDATDPEVLERAGIEKADAVVILT   70 (116)
T ss_dssp             EEEES-S--HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----SEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred             eEEEcCC--HHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c----cccccccchhhhHHhhcCccccCEEEEcc
Confidence            3455554  55555555543334 899999999998888763    3    567889887621 1111115689998887


Q ss_pred             CChhch--HHHHHhcccCCCEEEEEeCCHHH
Q 026506          190 PQPWLA--IPSAKKMLKQDGILCSFSPCIEQ  218 (237)
Q Consensus       190 ~~~~~~--l~~~~~~L~~gG~l~~~~~~~~~  218 (237)
                      ++....  +....+.+.|...+++.......
T Consensus        71 ~~d~~n~~~~~~~r~~~~~~~ii~~~~~~~~  101 (116)
T PF02254_consen   71 DDDEENLLIALLARELNPDIRIIARVNDPEN  101 (116)
T ss_dssp             SSHHHHHHHHHHHHHHTTTSEEEEEESSHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCeEEEEECCHHH
Confidence            766533  34455667788888877765544

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=95.75  E-value=0.2  Score=44.47  Aligned_cols=122  Identities=14%  Similarity=0.059  Sum_probs=75.9

Q ss_pred             cccccHHH-HHHhcCC--CCCCEEEEEccCccHHHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEE
Q 026506           92 LYIADISF-VIMYLEL--VPGCLVLESGTGSGSLTTSLARAVA---PTGHVYTFDFHEQRAASAREDFERTGVS-SFVTV  164 (237)
Q Consensus        92 ~~~~~~~~-~~~~~~~--~~~~~vldiG~G~G~~~~~~~~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~i~~  164 (237)
                      ..|..+.. +...+.+  .|+..+.|..||+|++.......+.   ....+++.+.++.+...++.++..++.. +....
T Consensus       198 ~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~  277 (501)
T TIGR00497       198 FTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNI  277 (501)
T ss_pred             eCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCc
Confidence            33444433 4444443  3668999999999998866554432   1246899999999999999987666542 22333


Q ss_pred             EEccccCC-CCCCCCCCCCCEEEEeCCCh------------------------------hchHHHHHhcccCCCEEEEEe
Q 026506          165 GVRDIQGQ-GFPDEFSGLADSIFLDLPQP------------------------------WLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       165 ~~~d~~~~-~~~~~~~~~~D~v~~~~~~~------------------------------~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ..+|-... .+..  ...||.|+.++|-.                              ..++......|++||+..++-
T Consensus       278 ~~~dtl~~~d~~~--~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~  355 (501)
T TIGR00497       278 INADTLTTKEWEN--ENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC  355 (501)
T ss_pred             ccCCcCCCccccc--cccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence            34444321 1111  14588887766410                              135667788999999877665


Q ss_pred             CC
Q 026506          214 PC  215 (237)
Q Consensus       214 ~~  215 (237)
                      |.
T Consensus       356 ~~  357 (501)
T TIGR00497       356 FP  357 (501)
T ss_pred             cC
Confidence            53

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=95.73  E-value=0.068  Score=44.13  Aligned_cols=97  Identities=14%  Similarity=0.092  Sum_probs=62.6

Q ss_pred             CCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          108 PGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       108 ~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ++++||..|+ |. |..+.++++..+  .++++++.+++..+.+++    .|....+...  +.....+.......+|+|
T Consensus       146 ~~~~vlI~g~~g~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~~v~~~~--~~~~~~~~~~~~~~~d~v  217 (326)
T cd08289         146 EQGPVLVTGATGGVGSLAVSILAKLG--YEVVASTGKADAADYLKK----LGAKEVIPRE--ELQEESIKPLEKQRWAGA  217 (326)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCC--CeEEEEecCHHHHHHHHH----cCCCEEEcch--hHHHHHHHhhccCCcCEE
Confidence            4679999998 55 777778888763  578999988888887755    4543211111  110011111112569997


Q ss_pred             EEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          186 FLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +-....  ..++...+.|+++|+++.++.
T Consensus       218 ld~~g~--~~~~~~~~~l~~~G~~i~~g~  244 (326)
T cd08289         218 VDPVGG--KTLAYLLSTLQYGGSVAVSGL  244 (326)
T ss_pred             EECCcH--HHHHHHHHHhhcCCEEEEEee
Confidence            744433  378889999999999998864

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>PLN02494 adenosylhomocysteinase

Probab=95.70  E-value=0.058  Score=46.90  Aligned_cols=90  Identities=17%  Similarity=0.223  Sum_probs=61.2

Q ss_pred             CCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       107 ~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..|.+|+.+|+|. |......++.++  .+|+++|.++.....+..    .|..    +.  +.. ..+     ...|+|
T Consensus       252 LaGKtVvViGyG~IGr~vA~~aka~G--a~VIV~e~dp~r~~eA~~----~G~~----vv--~le-Eal-----~~ADVV  313 (477)
T PLN02494        252 IAGKVAVICGYGDVGKGCAAAMKAAG--ARVIVTEIDPICALQALM----EGYQ----VL--TLE-DVV-----SEADIF  313 (477)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhhHHHHh----cCCe----ec--cHH-HHH-----hhCCEE
Confidence            5689999999999 666666666653  589999999876554433    2422    11  221 111     347998


Q ss_pred             EEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          186 FLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +........+.+..++.||+||+++..+-
T Consensus       314 I~tTGt~~vI~~e~L~~MK~GAiLiNvGr  342 (477)
T PLN02494        314 VTTTGNKDIIMVDHMRKMKNNAIVCNIGH  342 (477)
T ss_pred             EECCCCccchHHHHHhcCCCCCEEEEcCC
Confidence            87555444345889999999999997765

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=95.69  E-value=0.045  Score=45.29  Aligned_cols=103  Identities=16%  Similarity=0.175  Sum_probs=63.6

Q ss_pred             hcCCCCCCEEEEEc-cCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506          103 YLELVPGCLVLESG-TGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG  180 (237)
Q Consensus       103 ~~~~~~~~~vldiG-~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  180 (237)
                      .....++++++..| +|. |..+.++++..+  .++++++.+++..+.+++    .|.+..+.....++.+.......+.
T Consensus       135 ~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G--~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~  208 (327)
T PRK10754        135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGSAQKAQRAKK----AGAWQVINYREENIVERVKEITGGK  208 (327)
T ss_pred             hcCCCCCCEEEEEeCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----CCCCEEEcCCCCcHHHHHHHHcCCC
Confidence            34578899999986 444 777778888863  578889988888877754    4543212211111110000001114


Q ss_pred             CCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       181 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .+|+++.....  ..+....+.++++|+++.++
T Consensus       209 ~~d~vl~~~~~--~~~~~~~~~l~~~g~~v~~g  239 (327)
T PRK10754        209 KVRVVYDSVGK--DTWEASLDCLQRRGLMVSFG  239 (327)
T ss_pred             CeEEEEECCcH--HHHHHHHHHhccCCEEEEEc
Confidence            68987744433  36777889999999998764

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=95.64  E-value=0.072  Score=44.06  Aligned_cols=101  Identities=18%  Similarity=0.225  Sum_probs=63.5

Q ss_pred             cCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCC
Q 026506          104 LELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL  181 (237)
Q Consensus       104 ~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  181 (237)
                      ....++++++..|+ |. |..+..++...+  .+++++..+++..+.+++    .+.+..+.....+... .+.......
T Consensus       135 ~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~-~~~~~~~~~  207 (329)
T cd08250         135 GEMKSGETVLVTAAAGGTGQFAVQLAKLAG--CHVIGTCSSDEKAEFLKS----LGCDRPINYKTEDLGE-VLKKEYPKG  207 (329)
T ss_pred             cCCCCCCEEEEEeCccHHHHHHHHHHHHcC--CeEEEEeCcHHHHHHHHH----cCCceEEeCCCccHHH-HHHHhcCCC
Confidence            46788999999985 44 777777887763  568888888887777654    3542211111111110 010111145


Q ss_pred             CCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          182 ADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       182 ~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +|+++.....  ..+..+.+.|+++|+++.++
T Consensus       208 vd~v~~~~g~--~~~~~~~~~l~~~g~~v~~g  237 (329)
T cd08250         208 VDVVYESVGG--EMFDTCVDNLALKGRLIVIG  237 (329)
T ss_pred             CeEEEECCcH--HHHHHHHHHhccCCeEEEEe
Confidence            8997755443  47888899999999988665

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>PRK07340 ornithine cyclodeaminase; Validated

Probab=95.61  E-value=0.081  Score=43.69  Aligned_cols=103  Identities=16%  Similarity=0.047  Sum_probs=66.2

Q ss_pred             HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      ..+.+......+++.+|+|. |......+....+..++...+.+++..+...+.+...+    +.+...+.. ...    
T Consensus       116 a~~~La~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~----~~~~~~~~~-~av----  186 (304)
T PRK07340        116 AARTLAPAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALG----PTAEPLDGE-AIP----  186 (304)
T ss_pred             HHHHhCCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC----CeeEECCHH-HHh----
Confidence            45566666678999999998 55554444333455789999999888777666654332    222222322 111    


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCC
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                       ..+|+|+...+....++..   .++||-.+..++..
T Consensus       187 -~~aDiVitaT~s~~Pl~~~---~~~~g~hi~~iGs~  219 (304)
T PRK07340        187 -EAVDLVVTATTSRTPVYPE---AARAGRLVVAVGAF  219 (304)
T ss_pred             -hcCCEEEEccCCCCceeCc---cCCCCCEEEecCCC
Confidence             4689999877766656654   37888877766643

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=95.57  E-value=0.081  Score=43.23  Aligned_cols=103  Identities=21%  Similarity=0.201  Sum_probs=63.3

Q ss_pred             hcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506          103 YLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG  180 (237)
Q Consensus       103 ~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  180 (237)
                      ...+.++.+|+..|+ |. |..+..++...  ..++++++.+++..+.+++    .+....+.....+..+.......+.
T Consensus       134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~i~~~~~~~  207 (323)
T cd08241         134 RARLQPGETVLVLGAAGGVGLAAVQLAKAL--GARVIAAASSEEKLALARA----LGADHVIDYRDPDLRERVKALTGGR  207 (323)
T ss_pred             hcCCCCCCEEEEEcCCchHHHHHHHHHHHh--CCEEEEEeCCHHHHHHHHH----cCCceeeecCCccHHHHHHHHcCCC
Confidence            446778999999998 43 66667777775  3578999988888777754    3432212222112211000000114


Q ss_pred             CCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       181 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .+|+++.....  ..+..+.+.++++|+++.++
T Consensus       208 ~~d~v~~~~g~--~~~~~~~~~~~~~g~~v~~~  238 (323)
T cd08241         208 GVDVVYDPVGG--DVFEASLRSLAWGGRLLVIG  238 (323)
T ss_pred             CcEEEEECccH--HHHHHHHHhhccCCEEEEEc
Confidence            68997755443  36677889999999988665

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=95.55  E-value=0.082  Score=43.67  Aligned_cols=102  Identities=10%  Similarity=0.031  Sum_probs=63.6

Q ss_pred             cCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc-ccCCCCCCCCCC
Q 026506          104 LELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD-IQGQGFPDEFSG  180 (237)
Q Consensus       104 ~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~~~  180 (237)
                      ....++++|+..|+ |. |..+..+++..+  .+++.+..+++..+.+++    .+....+.....+ +.........+.
T Consensus       136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~  209 (334)
T PTZ00354        136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYG--AATIITTSSEEKVDFCKK----LAAIILIRYPDEEGFAPKVKKLTGEK  209 (334)
T ss_pred             cCCCCCCEEEEEcCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCCcEEEecCChhHHHHHHHHHhCCC
Confidence            45778999999985 44 777788888763  456667888888887754    4543212221112 111000000114


Q ss_pred             CCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       181 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ++|+++....  ...+..+.+.|+++|+++.++
T Consensus       210 ~~d~~i~~~~--~~~~~~~~~~l~~~g~~i~~~  240 (334)
T PTZ00354        210 GVNLVLDCVG--GSYLSETAEVLAVDGKWIVYG  240 (334)
T ss_pred             CceEEEECCc--hHHHHHHHHHhccCCeEEEEe
Confidence            6999885543  247788999999999998664

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=95.49  E-value=0.11  Score=43.17  Aligned_cols=97  Identities=19%  Similarity=0.219  Sum_probs=62.1

Q ss_pred             CCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          109 GCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       109 ~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      +.+|+..|+ |. |..+..+++..+. .++++++.+++..+.+++    .+....+... .+... .+......++|+++
T Consensus       150 g~~vlV~g~~g~vg~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~----~g~~~~~~~~-~~~~~-~i~~~~~~~~d~vl  222 (336)
T cd08252         150 GKTLLIIGGAGGVGSIAIQLAKQLTG-LTVIATASRPESIAWVKE----LGADHVINHH-QDLAE-QLEALGIEPVDYIF  222 (336)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHcCC-cEEEEEcCChhhHHHHHh----cCCcEEEeCC-ccHHH-HHHhhCCCCCCEEE
Confidence            899999985 44 7777788888632 689999988888887754    4543212211 12211 01111124699977


Q ss_pred             EeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          187 LDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ...+.. ..+..+.+.++++|+++.++
T Consensus       223 ~~~~~~-~~~~~~~~~l~~~g~~v~~g  248 (336)
T cd08252         223 CLTDTD-QHWDAMAELIAPQGHICLIV  248 (336)
T ss_pred             EccCcH-HHHHHHHHHhcCCCEEEEec
Confidence            554432 37888999999999988664

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=95.49  E-value=0.19  Score=40.73  Aligned_cols=96  Identities=23%  Similarity=0.293  Sum_probs=59.7

Q ss_pred             CCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCC
Q 026506          105 ELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA  182 (237)
Q Consensus       105 ~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  182 (237)
                      .+.++.+++..|+ |. |..+..++...  ..+++.++.++ ..+.+++    .+....+.....+...    ......+
T Consensus       141 ~~~~~~~vlv~g~~g~~g~~~~~~a~~~--g~~v~~~~~~~-~~~~~~~----~g~~~~~~~~~~~~~~----~~~~~~~  209 (309)
T cd05289         141 GLKAGQTVLIHGAAGGVGSFAVQLAKAR--GARVIATASAA-NADFLRS----LGADEVIDYTKGDFER----AAAPGGV  209 (309)
T ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHc--CCEEEEEecch-hHHHHHH----cCCCEEEeCCCCchhh----ccCCCCc
Confidence            3778999999996 54 66677777775  35677777655 5555533    4432212211112211    1112468


Q ss_pred             CEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          183 DSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       183 D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      |+++...+..  ....+.+.|+++|.++.++
T Consensus       210 d~v~~~~~~~--~~~~~~~~l~~~g~~v~~g  238 (309)
T cd05289         210 DAVLDTVGGE--TLARSLALVKPGGRLVSIA  238 (309)
T ss_pred             eEEEECCchH--HHHHHHHHHhcCcEEEEEc
Confidence            9988655544  6788889999999998665

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=95.38  E-value=0.11  Score=42.75  Aligned_cols=99  Identities=17%  Similarity=0.170  Sum_probs=61.3

Q ss_pred             CCCCCC-EEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCC
Q 026506          105 ELVPGC-LVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL  181 (237)
Q Consensus       105 ~~~~~~-~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  181 (237)
                      ...++. +|+..|+ |+ |..+..++...+  .+++.+..+++..+.+++    .+....+.....+........   ++
T Consensus       141 ~~~~~~~~vlI~g~~g~vg~~~~~la~~~G--~~vi~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~---~~  211 (323)
T TIGR02823       141 GLTPEDGPVLVTGATGGVGSLAVAILSKLG--YEVVASTGKAEEEDYLKE----LGASEVIDREDLSPPGKPLEK---ER  211 (323)
T ss_pred             CCCCCCceEEEEcCCcHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHh----cCCcEEEccccHHHHHHHhcC---CC
Confidence            367888 9999997 55 777788888863  467777666766666644    454321221111110001111   35


Q ss_pred             CCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          182 ADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       182 ~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +|+++......  .+..+.+.|+++|+++.++.
T Consensus       212 ~d~vld~~g~~--~~~~~~~~l~~~G~~v~~g~  242 (323)
T TIGR02823       212 WAGAVDTVGGH--TLANVLAQLKYGGAVAACGL  242 (323)
T ss_pred             ceEEEECccHH--HHHHHHHHhCCCCEEEEEcc
Confidence            89866544432  57888999999999987753

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>smart00829 PKS_ER Enoylreductase

Probab=95.26  E-value=0.13  Score=41.16  Aligned_cols=104  Identities=16%  Similarity=0.180  Sum_probs=63.9

Q ss_pred             HhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC--CCcEEEEEccccCCCCCCC
Q 026506          102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV--SSFVTVGVRDIQGQGFPDE  177 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~i~~~~~d~~~~~~~~~  177 (237)
                      ......++++|+..|. |. |..+..+++..  ..++++++.+++..+.+++    .+.  ...+.....+..+......
T Consensus        98 ~~~~~~~g~~vlv~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~  171 (288)
T smart00829       98 DLARLRPGESVLIHAAAGGVGQAAIQLAQHL--GAEVFATAGSPEKRDFLRE----LGIPDDHIFSSRDLSFADEILRAT  171 (288)
T ss_pred             HHhCCCCCCEEEEecCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCChhheeeCCCccHHHHHHHHh
Confidence            3456788999999984 44 66777777765  3579999988988887754    354  2212221112111000000


Q ss_pred             CCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       178 ~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .+..+|+++.... . ..+..+.+.++++|.++.++
T Consensus       172 ~~~~~d~vi~~~~-~-~~~~~~~~~l~~~g~~v~~g  205 (288)
T smart00829      172 GGRGVDVVLNSLA-G-EFLDASLRCLAPGGRFVEIG  205 (288)
T ss_pred             CCCCcEEEEeCCC-H-HHHHHHHHhccCCcEEEEEc
Confidence            1145898775444 2 46778889999999998765

Enoylreductase in Polyketide synthases.

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=95.18  E-value=0.11  Score=42.77  Aligned_cols=101  Identities=14%  Similarity=0.219  Sum_probs=62.1

Q ss_pred             cCCCCCCEEEEEccC-c-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCC-CCCCC
Q 026506          104 LELVPGCLVLESGTG-S-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP-DEFSG  180 (237)
Q Consensus       104 ~~~~~~~~vldiG~G-~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~  180 (237)
                      ....++.+||..|++ . |..+..+++..+  .+++++..+++..+.+++    .+.+..+.....+... .+. ...+.
T Consensus       134 ~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~-~~~~~~~~~  206 (323)
T cd05282         134 LKLPPGDWVIQNAANSAVGRMLIQLAKLLG--FKTINVVRRDEQVEELKA----LGADEVIDSSPEDLAQ-RVKEATGGA  206 (323)
T ss_pred             ccCCCCCEEEEcccccHHHHHHHHHHHHCC--CeEEEEecChHHHHHHHh----cCCCEEecccchhHHH-HHHHHhcCC
Confidence            346789999999873 3 777777888763  578888777877777654    4543322222111111 011 01114


Q ss_pred             CCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       181 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .+|+|+......  ......+.|+++|+++.++
T Consensus       207 ~~d~vl~~~g~~--~~~~~~~~l~~~g~~v~~g  237 (323)
T cd05282         207 GARLALDAVGGE--SATRLARSLRPGGTLVNYG  237 (323)
T ss_pred             CceEEEECCCCH--HHHHHHHhhCCCCEEEEEc
Confidence            699987555443  3567788999999988654

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=95.16  E-value=0.061  Score=44.56  Aligned_cols=109  Identities=19%  Similarity=0.176  Sum_probs=67.9

Q ss_pred             EEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCC
Q 026506          111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP  190 (237)
Q Consensus       111 ~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~  190 (237)
                      +++|+.||.|++...+...  +-..++++|+++.+.+.-+.|..        ....+|+.+....... ..+|+++..+|
T Consensus         2 ~~~dlFsG~Gg~~~g~~~a--g~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~-~~~D~l~ggpP   70 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQA--GFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLP-KDVDLLIGGPP   70 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHT--TEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHH-HT-SEEEEE--
T ss_pred             cEEEEccCccHHHHHHHhc--CcEEEEEeecCHHHHHhhhhccc--------cccccccccccccccc-ccceEEEeccC
Confidence            6899999999998777665  24678999999999999988853        5577787752211110 14999888776


Q ss_pred             Chh------------------chHHHHHhcccCCCEEEEEeCCH------HHHHHHHHHHHh-cC
Q 026506          191 QPW------------------LAIPSAKKMLKQDGILCSFSPCI------EQVQRSCESLRL-NF  230 (237)
Q Consensus       191 ~~~------------------~~l~~~~~~L~~gG~l~~~~~~~------~~~~~~~~~l~~-~f  230 (237)
                      +..                  ..+-++.+.++|.-.++=.++..      ...+.+++.|.+ |+
T Consensus        71 CQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY  135 (335)
T PF00145_consen   71 CQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGLLSSKNGEVFKEILEELEELGY  135 (335)
T ss_dssp             -TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTTE
T ss_pred             CceEeccccccccccccchhhHHHHHHHhhccceEEEecccceeeccccccccccccccccccce
Confidence            431                  12344456677876665344332      345777777776 53

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=95.15  E-value=0.15  Score=41.97  Aligned_cols=89  Identities=19%  Similarity=0.222  Sum_probs=57.4

Q ss_pred             CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-ccccCCCCCCCCCCCCCEE
Q 026506          108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV-RDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~~~~D~v  185 (237)
                      .+.+++.+|.|. |......+..++  .+|+++|.+++..+.++.    .+..    +.. .+.. ..+     ..+|+|
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~G--a~V~v~~r~~~~~~~~~~----~G~~----~~~~~~l~-~~l-----~~aDiV  214 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALG--ANVTVGARKSAHLARITE----MGLS----PFHLSELA-EEV-----GKIDII  214 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH----cCCe----eecHHHHH-HHh-----CCCCEE
Confidence            578999999998 666666666653  589999999876655543    3422    111 1111 111     458998


Q ss_pred             EEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          186 FLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      |...|... .-+...+.++||+.++-++
T Consensus       215 I~t~p~~~-i~~~~l~~~~~g~vIIDla  241 (296)
T PRK08306        215 FNTIPALV-LTKEVLSKMPPEALIIDLA  241 (296)
T ss_pred             EECCChhh-hhHHHHHcCCCCcEEEEEc
Confidence            88766432 4466778899988877443

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=95.13  E-value=0.06  Score=44.95  Aligned_cols=98  Identities=19%  Similarity=0.173  Sum_probs=60.3

Q ss_pred             CCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          107 VPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       107 ~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      .+++++|..|+ |. |..+..+++..+  .+++++. +++..+.+++    .|....+.....++.+ .+.....+.+|+
T Consensus       153 ~~~~~vlI~ga~g~vg~~~~~~a~~~G--~~v~~~~-~~~~~~~~~~----~g~~~v~~~~~~~~~~-~l~~~~~~~~d~  224 (339)
T cd08249         153 SKGKPVLIWGGSSSVGTLAIQLAKLAG--YKVITTA-SPKNFDLVKS----LGADAVFDYHDPDVVE-DIRAATGGKLRY  224 (339)
T ss_pred             CCCCEEEEEcChhHHHHHHHHHHHHcC--CeEEEEE-CcccHHHHHh----cCCCEEEECCCchHHH-HHHHhcCCCeeE
Confidence            67899999996 34 777888888863  4677665 5666666644    4553322222112111 111111256999


Q ss_pred             EEEeCCChhchHHHHHhcccC--CCEEEEEe
Q 026506          185 IFLDLPQPWLAIPSAKKMLKQ--DGILCSFS  213 (237)
Q Consensus       185 v~~~~~~~~~~l~~~~~~L~~--gG~l~~~~  213 (237)
                      ++.....+ ..+..+.+.|++  +|+++.++
T Consensus       225 vl~~~g~~-~~~~~~~~~l~~~~~g~~v~~g  254 (339)
T cd08249         225 ALDCISTP-ESAQLCAEALGRSGGGKLVSLL  254 (339)
T ss_pred             EEEeeccc-hHHHHHHHHHhccCCCEEEEec
Confidence            77544332 378889999999  99888664

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.12  E-value=0.55  Score=38.23  Aligned_cols=94  Identities=23%  Similarity=0.253  Sum_probs=62.8

Q ss_pred             hcCCCCCCEEEEEccC-c-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506          103 YLELVPGCLVLESGTG-S-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG  180 (237)
Q Consensus       103 ~~~~~~~~~vldiG~G-~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  180 (237)
                      .+...++++++..|+. . |..+..+++..+  .++++++.+++..+.+++    .|... .-....     .+..   +
T Consensus       127 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~~-~~~~~~-----~~~~---~  191 (305)
T cd08270         127 RGGPLLGRRVLVTGASGGVGRFAVQLAALAG--AHVVAVVGSPARAEGLRE----LGAAE-VVVGGS-----ELSG---A  191 (305)
T ss_pred             HhCCCCCCEEEEECCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCCcE-EEeccc-----cccC---C
Confidence            3444468999999983 3 667777777753  578999888888887765    35432 111111     1222   4


Q ss_pred             CCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       181 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .+|+++..... . .+....+.|+++|+++.++
T Consensus       192 ~~d~vl~~~g~-~-~~~~~~~~l~~~G~~v~~g  222 (305)
T cd08270         192 PVDLVVDSVGG-P-QLARALELLAPGGTVVSVG  222 (305)
T ss_pred             CceEEEECCCc-H-HHHHHHHHhcCCCEEEEEe
Confidence            68997754443 2 6788999999999999775

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=95.12  E-value=0.22  Score=40.73  Aligned_cols=36  Identities=25%  Similarity=0.355  Sum_probs=26.5

Q ss_pred             CCCCEEEE----eCCCh-hchHHHHHhcccCCCEEEEEeCC
Q 026506          180 GLADSIFL----DLPQP-WLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       180 ~~~D~v~~----~~~~~-~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      +.||+|+.    |.... .+.+..+.+.|||||+.+-++|-
T Consensus       258 ~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPL  298 (369)
T KOG2798|consen  258 GSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPL  298 (369)
T ss_pred             CccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccce
Confidence            46898854    44433 36889999999999999866553

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=95.11  E-value=0.09  Score=44.25  Aligned_cols=120  Identities=17%  Similarity=0.177  Sum_probs=77.8

Q ss_pred             cccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH-------HHHHcCC-CCcEEEE
Q 026506           94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASARE-------DFERTGV-SSFVTVG  165 (237)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~-------~~~~~~~-~~~i~~~  165 (237)
                      +...+.+.+.+.+.+++...|+|+|.|.+..+++... +...-+|+++...-.+.+..       ..+..|- .+.++.+
T Consensus       178 ~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a-~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i  256 (419)
T KOG3924|consen  178 LEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYA-GCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETI  256 (419)
T ss_pred             HHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhh-ccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeec
Confidence            3334457788899999999999999999998888775 33566777775443333322       2333443 4557888


Q ss_pred             EccccCCCCCCCCCCCCCEEEEeCC--Chh--chHHHHHhcccCCCEEEEEeC
Q 026506          166 VRDIQGQGFPDEFSGLADSIFLDLP--QPW--LAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       166 ~~d~~~~~~~~~~~~~~D~v~~~~~--~~~--~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ++++.....-.......++|+++-.  ++.  .-+++++.-+++|-+++-..|
T Consensus       257 ~gsf~~~~~v~eI~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~~  309 (419)
T KOG3924|consen  257 HGSFLDPKRVTEIQTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSKP  309 (419)
T ss_pred             ccccCCHHHHHHHhhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEecccc
Confidence            8888752221112245888887643  221  235578888999999984443

>PRK08618 ornithine cyclodeaminase; Validated

Probab=95.05  E-value=0.21  Score=41.68  Aligned_cols=103  Identities=15%  Similarity=0.075  Sum_probs=64.1

Q ss_pred             HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEE-EccccCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER-TGVSSFVTVG-VRDIQGQGFPD  176 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~i~~~-~~d~~~~~~~~  176 (237)
                      ..+.+......+++.+|||. |...........+..++..++.+++..+...+.+.. .+    +++. ..|.. ...  
T Consensus       118 a~~~la~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~----~~~~~~~~~~-~~~--  190 (325)
T PRK08618        118 ATKYLAREDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFN----TEIYVVNSAD-EAI--  190 (325)
T ss_pred             HHHHhcCCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcC----CcEEEeCCHH-HHH--
Confidence            44566656677999999998 554443332233457899999998887766655542 23    2222 22322 111  


Q ss_pred             CCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCC
Q 026506          177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       177 ~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                         ...|+|+...+.....+.   +.|+||-.+..++..
T Consensus       191 ---~~aDiVi~aT~s~~p~i~---~~l~~G~hV~~iGs~  223 (325)
T PRK08618        191 ---EEADIIVTVTNAKTPVFS---EKLKKGVHINAVGSF  223 (325)
T ss_pred             ---hcCCEEEEccCCCCcchH---HhcCCCcEEEecCCC
Confidence               358999988776654554   788998887666543

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=95.03  E-value=0.17  Score=42.17  Aligned_cols=104  Identities=11%  Similarity=0.036  Sum_probs=64.2

Q ss_pred             HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      ..+.+......++..||||. |...+.......+..++...|.+++..+...+.+.+.+..  +.. ..|.. ...    
T Consensus       119 aa~~La~~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~--v~~-~~~~~-eav----  190 (325)
T TIGR02371       119 AAKYLARKDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVP--VRA-ATDPR-EAV----  190 (325)
T ss_pred             HHHHhCCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCc--EEE-eCCHH-HHh----
Confidence            44566656668999999998 6554333333445688999999999887766665544421  222 22332 112    


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                       ...|+|+...+....++.  .+.||||-.+..++.
T Consensus       191 -~~aDiVitaT~s~~P~~~--~~~l~~g~~v~~vGs  223 (325)
T TIGR02371       191 -EGCDILVTTTPSRKPVVK--ADWVSEGTHINAIGA  223 (325)
T ss_pred             -ccCCEEEEecCCCCcEec--HHHcCCCCEEEecCC
Confidence             358999887765544443  345688777766654

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=95.01  E-value=0.15  Score=40.81  Aligned_cols=105  Identities=16%  Similarity=0.106  Sum_probs=62.9

Q ss_pred             hcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506          103 YLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG  180 (237)
Q Consensus       103 ~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  180 (237)
                      ...++++++++..|+ |. |..+..+++..+  .++++++.+++..+.+++...  .....+.....++.........+.
T Consensus       103 ~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  178 (293)
T cd05195         103 LARLQKGESVLIHAAAGGVGQAAIQLAQHLG--AEVFATVGSEEKREFLRELGG--PVDHIFSSRDLSFADGILRATGGR  178 (293)
T ss_pred             HhccCCCCEEEEecCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHhCC--CcceEeecCchhHHHHHHHHhCCC
Confidence            456789999999974 44 667777777753  578888888887777765310  011111111111111000000114


Q ss_pred             CCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       181 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .+|+++......  .++.+.+.++++|+++.++
T Consensus       179 ~~d~vi~~~~~~--~~~~~~~~l~~~g~~v~~g  209 (293)
T cd05195         179 GVDVVLNSLSGE--LLRASWRCLAPFGRFVEIG  209 (293)
T ss_pred             CceEEEeCCCch--HHHHHHHhcccCceEEEee
Confidence            689877555543  7888899999999988664

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=94.96  E-value=0.19  Score=41.62  Aligned_cols=97  Identities=14%  Similarity=0.107  Sum_probs=59.4

Q ss_pred             CCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          109 GCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       109 ~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      +.+||..|+ |. |..+.++++... ..+++++..+++..+.+++    .|.+..+.. ..+... .+.....+++|+|+
T Consensus       149 g~~vlV~ga~g~vg~~~~~~ak~~~-G~~vi~~~~~~~~~~~l~~----~g~~~~~~~-~~~~~~-~i~~~~~~~vd~vl  221 (336)
T TIGR02817       149 KRALLIIGGAGGVGSILIQLARQLT-GLTVIATASRPESQEWVLE----LGAHHVIDH-SKPLKA-QLEKLGLEAVSYVF  221 (336)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHhC-CCEEEEEcCcHHHHHHHHH----cCCCEEEEC-CCCHHH-HHHHhcCCCCCEEE
Confidence            899999986 33 667777777652 3578998888887777754    455332221 112111 11111124699977


Q ss_pred             EeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          187 LDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ..... ...+....+.|+++|+++.+.
T Consensus       222 ~~~~~-~~~~~~~~~~l~~~G~~v~~~  247 (336)
T TIGR02817       222 SLTHT-DQHFKEIVELLAPQGRFALID  247 (336)
T ss_pred             EcCCc-HHHHHHHHHHhccCCEEEEEc
Confidence            43322 236788899999999988653

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=94.95  E-value=0.33  Score=38.43  Aligned_cols=82  Identities=16%  Similarity=0.139  Sum_probs=46.3

Q ss_pred             CCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCH-------------------HHHHHHHHHHHHcCCCCcEEEEEcc
Q 026506          109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHE-------------------QRAASAREDFERTGVSSFVTVGVRD  168 (237)
Q Consensus       109 ~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~i~~~~~d  168 (237)
                      ..+|+.+|||. |......+.+. +-++++.+|.+.                   ...+.+++++...+-.-.++.....
T Consensus        11 ~~~VlVvG~GGvGs~va~~Lar~-GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~~   89 (231)
T cd00755          11 NAHVAVVGLGGVGSWAAEALARS-GVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEF   89 (231)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeeee
Confidence            46899999997 77776666665 447888888531                   2445556666554432224444433


Q ss_pred             ccCCCCCCCCCCCCCEEEEeCCC
Q 026506          169 IQGQGFPDEFSGLADSIFLDLPQ  191 (237)
Q Consensus       169 ~~~~~~~~~~~~~~D~v~~~~~~  191 (237)
                      +............||+|+.....
T Consensus        90 i~~~~~~~l~~~~~D~VvdaiD~  112 (231)
T cd00755          90 LTPDNSEDLLGGDPDFVVDAIDS  112 (231)
T ss_pred             cCHhHHHHHhcCCCCEEEEcCCC
Confidence            32111111111459997765443

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=94.93  E-value=0.36  Score=39.84  Aligned_cols=92  Identities=22%  Similarity=0.199  Sum_probs=54.6

Q ss_pred             CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506          110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD  188 (237)
Q Consensus       110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~  188 (237)
                      .+|..+|+|. |......+...+...+|+++|.+++..+.+++    .+...  . ...+.. ...     ...|+|++.
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~--~-~~~~~~-~~~-----~~aDvViia   73 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGD--R-VTTSAA-EAV-----KGADLVILC   73 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCc--e-ecCCHH-HHh-----cCCCEEEEC
Confidence            5799999887 44333333332222479999999987776654    34211  1 111111 111     458999998


Q ss_pred             CCCh--hchHHHHHhcccCCCEEEEEeC
Q 026506          189 LPQP--WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       189 ~~~~--~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .|..  ..+++.+...++++..++..+.
T Consensus        74 vp~~~~~~v~~~l~~~l~~~~iv~dvgs  101 (307)
T PRK07502         74 VPVGASGAVAAEIAPHLKPGAIVTDVGS  101 (307)
T ss_pred             CCHHHHHHHHHHHHhhCCCCCEEEeCcc
Confidence            8754  2456667777888887664443

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=94.92  E-value=0.13  Score=42.00  Aligned_cols=94  Identities=18%  Similarity=0.203  Sum_probs=65.7

Q ss_pred             CCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506          109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL  187 (237)
Q Consensus       109 ~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~  187 (237)
                      +.+|..+|.|. |..+..++..+  .+.|+..|+|.+++......+   +  .+++....+...  +.+. -..+|+++-
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~f---~--~rv~~~~st~~~--iee~-v~~aDlvIg  237 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDLF---G--GRVHTLYSTPSN--IEEA-VKKADLVIG  237 (371)
T ss_pred             CccEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHhh---C--ceeEEEEcCHHH--HHHH-hhhccEEEE
Confidence            46788999998 88888888775  478999999999998877753   2  235555444432  2211 145898763


Q ss_pred             e-----CCChhchHHHHHhcccCCCEEEEE
Q 026506          188 D-----LPQPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       188 ~-----~~~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                      .     ...|.-..++..+.||||+.++=+
T Consensus       238 aVLIpgakaPkLvt~e~vk~MkpGsVivDV  267 (371)
T COG0686         238 AVLIPGAKAPKLVTREMVKQMKPGSVIVDV  267 (371)
T ss_pred             EEEecCCCCceehhHHHHHhcCCCcEEEEE
Confidence            2     234556788999999999999833

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=94.91  E-value=0.29  Score=37.11  Aligned_cols=94  Identities=22%  Similarity=0.284  Sum_probs=55.6

Q ss_pred             EEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-------cC-CC--------CcEEEEEccccCCC
Q 026506          111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER-------TG-VS--------SFVTVGVRDIQGQG  173 (237)
Q Consensus       111 ~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-------~~-~~--------~~i~~~~~d~~~~~  173 (237)
                      +|..+|+|+ |.-...++...  +.+|+.+|.+++.++.+++++..       .+ ..        .++.+ ..|+.   
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~---   74 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLE---   74 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGG---
T ss_pred             CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHH---
Confidence            477899998 54333333332  47999999999999888776654       11 11        12332 23332   


Q ss_pred             CCCCCCCCCCEEEEeCCChh----chHHHHHhcccCCCEEEEEeC
Q 026506          174 FPDEFSGLADSIFLDLPQPW----LAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       174 ~~~~~~~~~D~v~~~~~~~~----~~l~~~~~~L~~gG~l~~~~~  214 (237)
                        ..  ...|+|+...+...    ++++++.+.++|+..|...+.
T Consensus        75 --~~--~~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTS  115 (180)
T PF02737_consen   75 --EA--VDADLVIEAIPEDLELKQELFAELDEICPPDTILASNTS  115 (180)
T ss_dssp             --GG--CTESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--S
T ss_pred             --HH--hhhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCC
Confidence              11  25899998887654    578888888888888875543

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=94.89  E-value=0.33  Score=36.29  Aligned_cols=100  Identities=23%  Similarity=0.175  Sum_probs=57.4

Q ss_pred             EEccCccHHHHHHHHHhCCCcEEEEE--eCCHHHHHH---HHHHHHHcCCCCcEEEEEccccCC-CCCCCCCCCCCEEEE
Q 026506          114 ESGTGSGSLTTSLARAVAPTGHVYTF--DFHEQRAAS---AREDFERTGVSSFVTVGVRDIQGQ-GFPDEFSGLADSIFL  187 (237)
Q Consensus       114 diG~G~G~~~~~~~~~~~~~~~v~~v--D~~~~~~~~---a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~~~D~v~~  187 (237)
                      -+|=|-=.++..++...+...++++.  |..++..+.   +..++..+.-....-....|+.+. .........||.|+.
T Consensus         2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF   81 (166)
T PF10354_consen    2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF   81 (166)
T ss_pred             eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence            35666667777888887545667666  444433332   224444332112122233455441 111112368999998


Q ss_pred             eCCChh------------------chHHHHHhcccCCCEEEEEe
Q 026506          188 DLPQPW------------------LAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       188 ~~~~~~------------------~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +-|...                  .+++++.++|+++|.+.+.-
T Consensus        82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl  125 (166)
T PF10354_consen   82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTL  125 (166)
T ss_pred             eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            876432                  46889999999999988654

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.88  E-value=0.44  Score=38.96  Aligned_cols=99  Identities=23%  Similarity=0.278  Sum_probs=56.1

Q ss_pred             CCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCC
Q 026506          105 ELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA  182 (237)
Q Consensus       105 ~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  182 (237)
                      ...++.+++..|+ |. |..+..++...+  .++++++.+ +..+.+++    .+....+.....++.   .....+..+
T Consensus       140 ~~~~g~~vli~g~~g~~g~~~~~la~~~g--~~v~~~~~~-~~~~~~~~----~g~~~~~~~~~~~~~---~~~~~~~~~  209 (319)
T cd08267         140 KVKPGQRVLINGASGGVGTFAVQIAKALG--AHVTGVCST-RNAELVRS----LGADEVIDYTTEDFV---ALTAGGEKY  209 (319)
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHcC--CEEEEEeCH-HHHHHHHH----cCCCEeecCCCCCcc---hhccCCCCC
Confidence            3778999999997 44 667777777753  578888754 55555543    454221221111111   001112569


Q ss_pred             CEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          183 DSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       183 D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      |+++................++++|+++.++
T Consensus       210 d~vi~~~~~~~~~~~~~~~~l~~~g~~i~~g  240 (319)
T cd08267         210 DVIFDAVGNSPFSLYRASLALKPGGRYVSVG  240 (319)
T ss_pred             cEEEECCCchHHHHHHhhhccCCCCEEEEec
Confidence            9988654422212223333499999998765

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK06141 ornithine cyclodeaminase; Validated

Probab=94.85  E-value=0.22  Score=41.31  Aligned_cols=103  Identities=21%  Similarity=0.213  Sum_probs=59.5

Q ss_pred             HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      ..+.+......+++.+|+|. |...........+..+++..+.+++..+...+.+...+..  +.. ..+.. ...    
T Consensus       116 a~~~La~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~--~~~-~~~~~-~av----  187 (314)
T PRK06141        116 AASYLARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFD--AEV-VTDLE-AAV----  187 (314)
T ss_pred             HHHHhCCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCc--eEE-eCCHH-HHH----
Confidence            44566666678999999998 6655443333335578999999988877666655443321  222 12221 111    


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                       ..+|+|+...+....++..  +.++||-.+...+
T Consensus       188 -~~aDIVi~aT~s~~pvl~~--~~l~~g~~i~~ig  219 (314)
T PRK06141        188 -RQADIISCATLSTEPLVRG--EWLKPGTHLDLVG  219 (314)
T ss_pred             -hcCCEEEEeeCCCCCEecH--HHcCCCCEEEeeC
Confidence             3589887655544333332  4567776554443

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=94.68  E-value=0.47  Score=38.67  Aligned_cols=97  Identities=15%  Similarity=0.054  Sum_probs=63.3

Q ss_pred             CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506          110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD  188 (237)
Q Consensus       110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~  188 (237)
                      .+|+.+|.|- |++....++..+....+++.|.+...++.+.+    .++.+   -...+...  ...   ...|+|++.
T Consensus         4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv~d---~~~~~~~~--~~~---~~aD~Viva   71 (279)
T COG0287           4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGVID---ELTVAGLA--EAA---AEADLVIVA   71 (279)
T ss_pred             cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCccc---ccccchhh--hhc---ccCCEEEEe
Confidence            5789999988 66655555555666678999998888877765    34322   11112111  111   458999998


Q ss_pred             CCCh--hchHHHHHhcccCCCEEEEEeCCHHH
Q 026506          189 LPQP--WLAIPSAKKMLKQDGILCSFSPCIEQ  218 (237)
Q Consensus       189 ~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~  218 (237)
                      .|-.  .++++++...|++|..+.=++.+...
T Consensus        72 vPi~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~  103 (279)
T COG0287          72 VPIEATEEVLKELAPHLKKGAIVTDVGSVKSS  103 (279)
T ss_pred             ccHHHHHHHHHHhcccCCCCCEEEecccccHH
Confidence            8744  35788888889999888755554433

>PRK06823 ornithine cyclodeaminase; Validated

Probab=94.65  E-value=0.26  Score=40.91  Aligned_cols=105  Identities=13%  Similarity=0.097  Sum_probs=65.7

Q ss_pred             HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      ..+.+......++..+|||. +..-........+-.+|...+.+++..+...+.+...+..  +.. ..+.. ...    
T Consensus       119 a~~~La~~d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~--v~~-~~~~~-~av----  190 (315)
T PRK06823        119 VARLLAPQHVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFA--VNT-TLDAA-EVA----  190 (315)
T ss_pred             HHHHhcCCCCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCc--EEE-ECCHH-HHh----
Confidence            45566666678999999999 6655555544556689999999999888766666544321  222 22222 111    


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCC
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                       ...|+|+...+....+++.  +.|+||-.+..++..
T Consensus       191 -~~ADIV~taT~s~~P~~~~--~~l~~G~hi~~iGs~  224 (315)
T PRK06823        191 -HAANLIVTTTPSREPLLQA--EDIQPGTHITAVGAD  224 (315)
T ss_pred             -cCCCEEEEecCCCCceeCH--HHcCCCcEEEecCCC
Confidence             4589988766554444432  456777776655543

>PRK13699 putative methylase; Provisional

Probab=94.60  E-value=0.056  Score=42.66  Aligned_cols=66  Identities=24%  Similarity=0.287  Sum_probs=42.9

Q ss_pred             EEEEccccC--CCCCCCCCCCCCEEEEeCCCh--------------------hchHHHHHhcccCCCEEEEEeCCHHHHH
Q 026506          163 TVGVRDIQG--QGFPDEFSGLADSIFLDLPQP--------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQ  220 (237)
Q Consensus       163 ~~~~~d~~~--~~~~~~~~~~~D~v~~~~~~~--------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~  220 (237)
                      ++..+|..+  ..+++   +++|+|+.|+|-.                    ...++++.++|||||.++++.... +..
T Consensus         3 ~l~~gD~le~l~~lpd---~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~-~~~   78 (227)
T PRK13699          3 RFILGNCIDVMARFPD---NAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN-RVD   78 (227)
T ss_pred             eEEechHHHHHHhCCc---cccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc-cHH
Confidence            345566654  23444   6788888877631                    146788899999999988765432 245


Q ss_pred             HHHHHHHh-cCcc
Q 026506          221 RSCESLRL-NFTG  232 (237)
Q Consensus       221 ~~~~~l~~-~f~~  232 (237)
                      .+...+++ +|.-
T Consensus        79 ~~~~al~~~GF~l   91 (227)
T PRK13699         79 RFMAAWKNAGFSV   91 (227)
T ss_pred             HHHHHHHHCCCEE
Confidence            56666766 7753

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=94.60  E-value=0.15  Score=42.44  Aligned_cols=101  Identities=13%  Similarity=0.176  Sum_probs=57.9

Q ss_pred             cCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCH----HHHHHHHHHHHHcCCCCcEEEEEc---cccCCCC
Q 026506          104 LELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHE----QRAASAREDFERTGVSSFVTVGVR---DIQGQGF  174 (237)
Q Consensus       104 ~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~----~~~~~a~~~~~~~~~~~~i~~~~~---d~~~~~~  174 (237)
                      ....++.+||..|+ |+ |..+.+++...+  .+++++..++    +..+.+++    .+.+..+.....   +... .+
T Consensus       142 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~-~i  214 (341)
T cd08290         142 VKLQPGDWVIQNGANSAVGQAVIQLAKLLG--IKTINVVRDRPDLEELKERLKA----LGADHVLTEEELRSLLATE-LL  214 (341)
T ss_pred             cccCCCCEEEEccchhHHHHHHHHHHHHcC--CeEEEEEcCCCcchhHHHHHHh----cCCCEEEeCcccccccHHH-HH
Confidence            45688999999986 44 777788888864  3455544333    34454433    454332222111   1111 01


Q ss_pred             CCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          175 PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       175 ~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .....+.+|+|+......  .+..+.+.|+++|+++.++
T Consensus       215 ~~~~~~~~d~vld~~g~~--~~~~~~~~l~~~G~~v~~g  251 (341)
T cd08290         215 KSAPGGRPKLALNCVGGK--SATELARLLSPGGTMVTYG  251 (341)
T ss_pred             HHHcCCCceEEEECcCcH--hHHHHHHHhCCCCEEEEEe
Confidence            111112689987544432  4567889999999998765

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=94.58  E-value=0.072  Score=41.65  Aligned_cols=83  Identities=12%  Similarity=0.112  Sum_probs=52.7

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEccccCCCCCCCC--CCCCC
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-GVSSFVTVGVRDIQGQGFPDEF--SGLAD  183 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~~~~~~--~~~~D  183 (237)
                      .+..++||||.|.-..--.+-.+. =+-+.++.|+++..++.|+.++..+ ++...|+.....-.+.-++...  .+.||
T Consensus        77 ~~~i~~LDIGvGAnCIYPliG~~e-YgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd  155 (292)
T COG3129          77 GKNIRILDIGVGANCIYPLIGVHE-YGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYD  155 (292)
T ss_pred             cCceEEEeeccCccccccccccee-ecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceee
Confidence            456789999887643221111111 1257899999999999999998877 5665566654322222233221  25799


Q ss_pred             EEEEeCC
Q 026506          184 SIFLDLP  190 (237)
Q Consensus       184 ~v~~~~~  190 (237)
                      ...+|+|
T Consensus       156 ~tlCNPP  162 (292)
T COG3129         156 ATLCNPP  162 (292)
T ss_pred             eEecCCC
Confidence            9999887

>PTZ00357 methyltransferase; Provisional

Probab=94.54  E-value=0.29  Score=44.38  Aligned_cols=98  Identities=19%  Similarity=0.165  Sum_probs=62.5

Q ss_pred             EEEEEccCccHHHHHHHHH---hCCCcEEEEEeCCHHHHHHHHHHHH-HcCC-------CCcEEEEEccccCCCCCC---
Q 026506          111 LVLESGTGSGSLTTSLARA---VAPTGHVYTFDFHEQRAASAREDFE-RTGV-------SSFVTVGVRDIQGQGFPD---  176 (237)
Q Consensus       111 ~vldiG~G~G~~~~~~~~~---~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~-------~~~i~~~~~d~~~~~~~~---  176 (237)
                      .|+.+|+|-|-+....++.   .+-..+++++|-|++.....+.+.. ...+       .++++++..|+.....+.   
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            5899999999886555443   3445689999999775444443321 1122       345899999998733221   


Q ss_pred             -----CCCCCCCEEEEeCC-------ChhchHHHHHhcccC----CCE
Q 026506          177 -----EFSGLADSIFLDLP-------QPWLAIPSAKKMLKQ----DGI  208 (237)
Q Consensus       177 -----~~~~~~D~v~~~~~-------~~~~~l~~~~~~L~~----gG~  208 (237)
                           ...+++|+|+...-       -..+.|..+.+.||+    +|+
T Consensus       783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence                 01136999985321       223578888888876    776

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.50  E-value=0.51  Score=38.93  Aligned_cols=97  Identities=23%  Similarity=0.309  Sum_probs=60.5

Q ss_pred             cCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCC
Q 026506          104 LELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL  181 (237)
Q Consensus       104 ~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  181 (237)
                      ....++++++..|+ |. |..+..+++..+  .+++++.. +...+.+++    .|... +.....+.......   .+.
T Consensus       135 ~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g--~~v~~~~~-~~~~~~~~~----~g~~~-~~~~~~~~~~~~~~---~~~  203 (331)
T cd08273         135 AKVLTGQRVLIHGASGGVGQALLELALLAG--AEVYGTAS-ERNHAALRE----LGATP-IDYRTKDWLPAMLT---PGG  203 (331)
T ss_pred             cCCCCCCEEEEECCCcHHHHHHHHHHHHcC--CEEEEEeC-HHHHHHHHH----cCCeE-EcCCCcchhhhhcc---CCC
Confidence            46788999999996 44 667777777753  57887776 766666644    34211 11111122111011   146


Q ss_pred             CCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          182 ADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       182 ~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +|+++......  .+....+.++++|+++.++
T Consensus       204 ~d~vl~~~~~~--~~~~~~~~l~~~g~~v~~g  233 (331)
T cd08273         204 VDVVFDGVGGE--SYEESYAALAPGGTLVCYG  233 (331)
T ss_pred             ceEEEECCchH--HHHHHHHHhcCCCEEEEEc
Confidence            89977554443  3788899999999998665

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=94.50  E-value=0.025  Score=47.94  Aligned_cols=62  Identities=18%  Similarity=0.258  Sum_probs=52.4

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEEcccc
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSF-VTVGVRDIQ  170 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-i~~~~~d~~  170 (237)
                      .++|+.|.|+.||.|-+++.++..   .+.|++.|.++++++..+.++..+.++.. +.....|+.
T Consensus       247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~  309 (495)
T KOG2078|consen  247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAK  309 (495)
T ss_pred             cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHH
Confidence            578999999999999999887776   38999999999999999999988777654 676666554

>TIGR00518 alaDH alanine dehydrogenase

Probab=94.46  E-value=0.2  Score=42.55  Aligned_cols=96  Identities=18%  Similarity=0.201  Sum_probs=58.0

Q ss_pred             CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      ++.+|+.+|+|. |..+...+..++  .+|+++|.+++.++.+...+   +. . +.....+..  .+... -..+|+|+
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~~~---g~-~-v~~~~~~~~--~l~~~-l~~aDvVI  235 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDAEF---GG-R-IHTRYSNAY--EIEDA-VKRADLLI  235 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHhc---Cc-e-eEeccCCHH--HHHHH-HccCCEEE
Confidence            456799999998 777777777764  47999999988776655432   21 1 211111111  01110 13589988


Q ss_pred             EeCCC-----hhchHHHHHhcccCCCEEEEEe
Q 026506          187 LDLPQ-----PWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       187 ~~~~~-----~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ...+.     +.-.-+...+.++|++.++-++
T Consensus       236 ~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva  267 (370)
T TIGR00518       236 GAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVA  267 (370)
T ss_pred             EccccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence            65421     2223477778889998887544

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=94.46  E-value=0.75  Score=34.22  Aligned_cols=95  Identities=15%  Similarity=0.173  Sum_probs=55.9

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC-CCCCCCCCCCCCEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGFPDEFSGLADSI  185 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~~~~D~v  185 (237)
                      .++.+|+-+||=+-...+  .+...+..+++..|++...-.        .+  .. ++..-|..+ ..++....+.+|+|
T Consensus        24 ~~~~~iaclstPsl~~~l--~~~~~~~~~~~Lle~D~RF~~--------~~--~~-~F~fyD~~~p~~~~~~l~~~~d~v   90 (162)
T PF10237_consen   24 LDDTRIACLSTPSLYEAL--KKESKPRIQSFLLEYDRRFEQ--------FG--GD-EFVFYDYNEPEELPEELKGKFDVV   90 (162)
T ss_pred             CCCCEEEEEeCcHHHHHH--HhhcCCCccEEEEeecchHHh--------cC--Cc-ceEECCCCChhhhhhhcCCCceEE
Confidence            456899999887755443  332234578999999764332        22  11 234445443 23343334789999


Q ss_pred             EEeCCChh-----chHHHHHhcccCCCEEEEEeC
Q 026506          186 FLDLPQPW-----LAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       186 ~~~~~~~~-----~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ++|+|=-.     .+.+.+..++++++.+++..+
T Consensus        91 v~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg  124 (162)
T PF10237_consen   91 VIDPPFLSEECLTKTAETIRLLLKPGGKIILCTG  124 (162)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHhCccceEEEecH
Confidence            99998321     122444455578788875543

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=94.45  E-value=0.22  Score=43.47  Aligned_cols=90  Identities=18%  Similarity=0.159  Sum_probs=59.9

Q ss_pred             CCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       107 ~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      -.|.+|+.+|+|. |......+..+  ..+|+++|.++.....+..    .|.    ++.  ++.+ .+     ...|+|
T Consensus       252 LaGKtVgVIG~G~IGr~vA~rL~a~--Ga~ViV~e~dp~~a~~A~~----~G~----~~~--~lee-ll-----~~ADIV  313 (476)
T PTZ00075        252 IAGKTVVVCGYGDVGKGCAQALRGF--GARVVVTEIDPICALQAAM----EGY----QVV--TLED-VV-----ETADIF  313 (476)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhHHHHHh----cCc----eec--cHHH-HH-----hcCCEE
Confidence            4689999999998 66666666654  3589999988776543332    232    211  2211 11     458999


Q ss_pred             EEeCCChhchH-HHHHhcccCCCEEEEEeCC
Q 026506          186 FLDLPQPWLAI-PSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       186 ~~~~~~~~~~l-~~~~~~L~~gG~l~~~~~~  215 (237)
                      +....... ++ ....+.||||++|+-.+-.
T Consensus       314 I~atGt~~-iI~~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        314 VTATGNKD-IITLEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             EECCCccc-ccCHHHHhccCCCcEEEEcCCC
Confidence            88765443 55 5889999999999977654

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=94.39  E-value=0.24  Score=40.76  Aligned_cols=95  Identities=16%  Similarity=0.120  Sum_probs=60.3

Q ss_pred             CCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc-cCCCCCCCCCCCCCEE
Q 026506          109 GCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI-QGQGFPDEFSGLADSI  185 (237)
Q Consensus       109 ~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~~~~D~v  185 (237)
                      +.+|+..|+ |. |..+..+++..+  .++++++.+++..+.+++    .+.+..+.....+. .......   +.+|+|
T Consensus       147 ~~~vlI~g~~g~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~---~~~d~v  217 (325)
T cd05280         147 DGPVLVTGATGGVGSIAVAILAKLG--YTVVALTGKEEQADYLKS----LGASEVLDREDLLDESKKPLLK---ARWAGA  217 (325)
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----cCCcEEEcchhHHHHHHHHhcC---CCccEE
Confidence            568999987 55 777777788763  468999999988887754    45432111111000 0011111   458987


Q ss_pred             EEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          186 FLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +.....  ..+..+.+.++++|+++.++.
T Consensus       218 i~~~~~--~~~~~~~~~l~~~g~~v~~g~  244 (325)
T cd05280         218 IDTVGG--DVLANLLKQTKYGGVVASCGN  244 (325)
T ss_pred             EECCch--HHHHHHHHhhcCCCEEEEEec
Confidence            744433  378899999999999987753

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=94.36  E-value=0.57  Score=42.18  Aligned_cols=97  Identities=18%  Similarity=0.156  Sum_probs=60.7

Q ss_pred             CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCCCCCCCCCEEEE
Q 026506          110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLADSIFL  187 (237)
Q Consensus       110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~~D~v~~  187 (237)
                      ++++.+|+|. |......+..  ....++.+|.|++..+.+++    .+    .....+|..+.. +....-..+|.++.
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~--~g~~vvvId~d~~~~~~~~~----~g----~~~i~GD~~~~~~L~~a~i~~a~~viv  487 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLA--AGIPLVVIETSRTRVDELRE----RG----IRAVLGNAANEEIMQLAHLDCARWLLL  487 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHH----CC----CeEEEcCCCCHHHHHhcCccccCEEEE
Confidence            6788888888 5554444333  23579999999999888875    23    667889987622 11111257898887


Q ss_pred             eCCChhch--HHHHHhcccCCCEEEEEeCCH
Q 026506          188 DLPQPWLA--IPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       188 ~~~~~~~~--l~~~~~~L~~gG~l~~~~~~~  216 (237)
                      ..++..+.  +-...+...|...++.-....
T Consensus       488 ~~~~~~~~~~iv~~~~~~~~~~~iiar~~~~  518 (558)
T PRK10669        488 TIPNGYEAGEIVASAREKRPDIEIIARAHYD  518 (558)
T ss_pred             EcCChHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence            76654432  333345556777777555433

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=94.32  E-value=0.2  Score=38.76  Aligned_cols=81  Identities=15%  Similarity=0.110  Sum_probs=46.0

Q ss_pred             CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCC-------------------HHHHHHHHHHHHHcCCCCcEEEEEc
Q 026506          108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFH-------------------EQRAASAREDFERTGVSSFVTVGVR  167 (237)
Q Consensus       108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~-------------------~~~~~~a~~~~~~~~~~~~i~~~~~  167 (237)
                      ...+|+.+|||. |......+... +-++++.+|.+                   ....+.+.+++....-.-.++....
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~   98 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE   98 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence            457999999997 76665555554 34789999865                   2345556666654432222443333


Q ss_pred             cccCCCCCCCCCCCCCEEEEeCC
Q 026506          168 DIQGQGFPDEFSGLADSIFLDLP  190 (237)
Q Consensus       168 d~~~~~~~~~~~~~~D~v~~~~~  190 (237)
                      .+....+.+ .-..+|+|+....
T Consensus        99 ~i~~~~~~~-~~~~~D~Vi~~~d  120 (202)
T TIGR02356        99 RVTAENLEL-LINNVDLVLDCTD  120 (202)
T ss_pred             cCCHHHHHH-HHhCCCEEEECCC
Confidence            332211111 1146999876544

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=94.23  E-value=0.36  Score=39.41  Aligned_cols=102  Identities=18%  Similarity=0.197  Sum_probs=61.3

Q ss_pred             cCCCCCCEEEEEccC-c-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCC
Q 026506          104 LELVPGCLVLESGTG-S-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL  181 (237)
Q Consensus       104 ~~~~~~~~vldiG~G-~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  181 (237)
                      ....++.+++..|+. . |..++.++...  ..++++++.+++..+.+++    .+.+..+.....+.............
T Consensus       140 ~~~~~g~~vlI~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~  213 (325)
T cd08253         140 AGAKAGETVLVHGGSGAVGHAAVQLARWA--GARVIATASSAEGAELVRQ----AGADAVFNYRAEDLADRILAATAGQG  213 (325)
T ss_pred             hCCCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCcCHHHHHHHHcCCCc
Confidence            567789999999863 3 55566666664  3679999988887777654    35432122211111110000001146


Q ss_pred             CCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          182 ADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       182 ~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +|+++......  .++...+.++++|.++.++
T Consensus       214 ~d~vi~~~~~~--~~~~~~~~l~~~g~~v~~~  243 (325)
T cd08253         214 VDVIIEVLANV--NLAKDLDVLAPGGRIVVYG  243 (325)
T ss_pred             eEEEEECCchH--HHHHHHHhhCCCCEEEEEe
Confidence            99988655443  4567778899999888664

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=94.16  E-value=0.27  Score=41.01  Aligned_cols=94  Identities=22%  Similarity=0.285  Sum_probs=56.5

Q ss_pred             CCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          108 PGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       108 ~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ++++|+..|. |. |..+..+++..+  .+++++..+ +..+.+++    .+....+.....+.. ..+..  .+.+|++
T Consensus       162 ~g~~vlI~g~~g~ig~~~~~~a~~~G--~~v~~~~~~-~~~~~~~~----~g~~~~~~~~~~~~~-~~l~~--~~~vd~v  231 (350)
T cd08248         162 AGKRVLILGGSGGVGTFAIQLLKAWG--AHVTTTCST-DAIPLVKS----LGADDVIDYNNEDFE-EELTE--RGKFDVI  231 (350)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCC--CeEEEEeCc-chHHHHHH----hCCceEEECCChhHH-HHHHh--cCCCCEE
Confidence            4899999984 55 777777777764  467766543 44444433    454321221111111 11111  1469998


Q ss_pred             EEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          186 FLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +......  .++.+.+.|+++|+++.++
T Consensus       232 i~~~g~~--~~~~~~~~l~~~G~~v~~g  257 (350)
T cd08248         232 LDTVGGD--TEKWALKLLKKGGTYVTLV  257 (350)
T ss_pred             EECCChH--HHHHHHHHhccCCEEEEec
Confidence            8655543  7888999999999999764

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.15  E-value=0.3  Score=39.97  Aligned_cols=103  Identities=17%  Similarity=0.170  Sum_probs=61.2

Q ss_pred             hcCCCCCCEEEEEccC-c-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506          103 YLELVPGCLVLESGTG-S-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG  180 (237)
Q Consensus       103 ~~~~~~~~~vldiG~G-~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  180 (237)
                      .....++.+++..|+. . |..+..++...  ..+++.++.++...+.+++    .+....+.....+............
T Consensus       139 ~~~~~~~~~vli~g~~~~~g~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~  212 (328)
T cd08268         139 LAGLRPGDSVLITAASSSVGLAAIQIANAA--GATVIATTRTSEKRDALLA----LGAAHVIVTDEEDLVAEVLRITGGK  212 (328)
T ss_pred             hcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----cCCCEEEecCCccHHHHHHHHhCCC
Confidence            3456788999999873 3 55566666664  3678888888877776644    3432212211111110000000113


Q ss_pred             CCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       181 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .+|+++.....  .....+.+.++++|+++.++
T Consensus       213 ~~d~vi~~~~~--~~~~~~~~~l~~~g~~v~~g  243 (328)
T cd08268         213 GVDVVFDPVGG--PQFAKLADALAPGGTLVVYG  243 (328)
T ss_pred             CceEEEECCch--HhHHHHHHhhccCCEEEEEE
Confidence            58998865554  35778889999999998665

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=94.11  E-value=0.33  Score=33.74  Aligned_cols=105  Identities=22%  Similarity=0.212  Sum_probs=64.1

Q ss_pred             EEEEEccCc-cHHHHHHHHHhCCCcEEE-EEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506          111 LVLESGTGS-GSLTTSLARAVAPTGHVY-TFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD  188 (237)
Q Consensus       111 ~vldiG~G~-G~~~~~~~~~~~~~~~v~-~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~  188 (237)
                      +|..+|+|. |.....-.....+..++. .+|.+++..+.+.+.   .+.    . ...|..+ -+..   ..+|+|++.
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~---~~~----~-~~~~~~~-ll~~---~~~D~V~I~   69 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK---YGI----P-VYTDLEE-LLAD---EDVDAVIIA   69 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH---TTS----E-EESSHHH-HHHH---TTESEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH---hcc----c-chhHHHH-HHHh---hcCCEEEEe
Confidence            678899988 443332333333445555 669998877766443   443    2 3334332 1221   469999998


Q ss_pred             CCChhchHHHHHhcccCCCEEEEEeCC---HHHHHHHHHHHHh
Q 026506          189 LPQPWLAIPSAKKMLKQDGILCSFSPC---IEQVQRSCESLRL  228 (237)
Q Consensus       189 ~~~~~~~l~~~~~~L~~gG~l~~~~~~---~~~~~~~~~~l~~  228 (237)
                      .+... -.+.+...|+.|--+++--|.   .++.+++.+..++
T Consensus        70 tp~~~-h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~  111 (120)
T PF01408_consen   70 TPPSS-HAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKE  111 (120)
T ss_dssp             SSGGG-HHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred             cCCcc-hHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHH
Confidence            87654 567777788888777766554   4556666666655

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.10  E-value=1  Score=35.21  Aligned_cols=104  Identities=14%  Similarity=0.167  Sum_probs=61.3

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CC----C--CCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FP----D--EFS  179 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~----~--~~~  179 (237)
                      .+.+|+..|++ |.++..+++.+ ....+|++++.+++..+.+.+.....+  + +.+...|+.+.. ..    .  ...
T Consensus         4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~-~~~~~~Dl~~~~~~~~~~~~~~~~~   79 (238)
T PRK05786          4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG--N-IHYVVGDVSSTESARNVIEKAAKVL   79 (238)
T ss_pred             CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--C-eEEEECCCCCHHHHHHHHHHHHHHh
Confidence            35789999875 44444444333 234689999998877766544433222  3 777788876511 00    0  001


Q ss_pred             CCCCEEEEeCCCh----------------------hchHHHHHhcccCCCEEEEEeCC
Q 026506          180 GLADSIFLDLPQP----------------------WLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       180 ~~~D~v~~~~~~~----------------------~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      +.+|.++.+....                      ..+++.+.+.++++|.+++++..
T Consensus        80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~  137 (238)
T PRK05786         80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSM  137 (238)
T ss_pred             CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecc
Confidence            4578888765421                      12355666777788888877643

>cd08251 polyketide_synthase polyketide synthase

Probab=94.09  E-value=0.37  Score=38.96  Aligned_cols=104  Identities=16%  Similarity=0.159  Sum_probs=63.7

Q ss_pred             HhcCCCCCCEEEEEccC-c-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          102 MYLELVPGCLVLESGTG-S-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~G-~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ......++++++..|.. . |..+..+++..  ..++++++.+++..+.+++    .+.+..+.....+..........+
T Consensus       114 ~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~i~~~~~~  187 (303)
T cd08251         114 ARAGLAKGEHILIQTATGGTGLMAVQLARLK--GAEIYATASSDDKLEYLKQ----LGVPHVINYVEEDFEEEIMRLTGG  187 (303)
T ss_pred             HhcCCCCCCEEEEecCCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHcCC
Confidence            45667889999987543 3 55666777776  3679999888887777754    455332222222221100000111


Q ss_pred             CCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       180 ~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ..+|+++.... . ..+....+.++++|+++.++
T Consensus       188 ~~~d~v~~~~~-~-~~~~~~~~~l~~~g~~v~~~  219 (303)
T cd08251         188 RGVDVVINTLS-G-EAIQKGLNCLAPGGRYVEIA  219 (303)
T ss_pred             CCceEEEECCc-H-HHHHHHHHHhccCcEEEEEe
Confidence            46898775443 2 36778889999999988664

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>PRK07589 ornithine cyclodeaminase; Validated

Probab=94.08  E-value=0.33  Score=40.84  Aligned_cols=103  Identities=13%  Similarity=0.146  Sum_probs=62.8

Q ss_pred             HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-ccccCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV-RDIQGQGFPDE  177 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~  177 (237)
                      ..+++......++..+|||. +..-........+-.+|...+.+++..+...+.+...+    +++.. .|.. ...   
T Consensus       120 a~~~Lar~da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~----~~v~~~~~~~-~av---  191 (346)
T PRK07589        120 AAKYLARPDSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPG----LRIVACRSVA-EAV---  191 (346)
T ss_pred             HHHHhccCCCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcC----CcEEEeCCHH-HHH---
Confidence            44556556667899999999 66555444444566899999999998877666665433    22222 2322 112   


Q ss_pred             CCCCCCEEEEeCCChh--chHHHHHhcccCCCEEEEEeC
Q 026506          178 FSGLADSIFLDLPQPW--LAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       178 ~~~~~D~v~~~~~~~~--~~l~~~~~~L~~gG~l~~~~~  214 (237)
                        ...|+|+...+...  .++..  +.|+||-.+..++.
T Consensus       192 --~~ADIIvtaT~S~~~~Pvl~~--~~lkpG~hV~aIGs  226 (346)
T PRK07589        192 --EGADIITTVTADKTNATILTD--DMVEPGMHINAVGG  226 (346)
T ss_pred             --hcCCEEEEecCCCCCCceecH--HHcCCCcEEEecCC
Confidence              35898887654322  23332  46677776665543

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=94.06  E-value=1.2  Score=32.38  Aligned_cols=110  Identities=17%  Similarity=0.218  Sum_probs=55.3

Q ss_pred             CCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       107 ~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..+.+++.+|+|. |......+...+ ...++.+|.+++..+...+......    +.....|..+  . .   ..+|+|
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~--~-~---~~~Dvv   85 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGELG----IAIAYLDLEE--L-L---AEADLI   85 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhcc----cceeecchhh--c-c---ccCCEE
Confidence            4467999999875 332222222222 3579999999877665544332111    1111222211  1 1   568999


Q ss_pred             EEeCCChhc---hHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh
Q 026506          186 FLDLPQPWL---AIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL  228 (237)
Q Consensus       186 ~~~~~~~~~---~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~  228 (237)
                      +...+....   ........++++..++-.+..... ..+.+.+++
T Consensus        86 i~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~-~~l~~~~~~  130 (155)
T cd01065          86 INTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLE-TPLLKEARA  130 (155)
T ss_pred             EeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCC-CHHHHHHHH
Confidence            887654331   111112346777766644332221 155555555

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=93.95  E-value=0.47  Score=39.63  Aligned_cols=113  Identities=13%  Similarity=0.115  Sum_probs=69.3

Q ss_pred             CEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC-CCCEEEEe
Q 026506          110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG-LADSIFLD  188 (237)
Q Consensus       110 ~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~-~~D~v~~~  188 (237)
                      .+++|+.||.|++..-+... + -.-+.++|+++.+++.-+.|...      -.+...|+.+..... ... .+|+++-.
T Consensus         4 ~~~idLFsG~GG~~lGf~~a-g-f~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~-~~~~~~DvligG   74 (328)
T COG0270           4 MKVIDLFAGIGGLSLGFEEA-G-FEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEA-LRKSDVDVLIGG   74 (328)
T ss_pred             ceEEeeccCCchHHHHHHhc-C-CeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhh-ccccCCCEEEeC
Confidence            58999999999998666654 2 46788999999999988887532      233445554311111 112 68998876


Q ss_pred             CCChh------------------chHHHHHhcccCCCEEEEEeCCH-----HHHHHHHHHHHh-cCc
Q 026506          189 LPQPW------------------LAIPSAKKMLKQDGILCSFSPCI-----EQVQRSCESLRL-NFT  231 (237)
Q Consensus       189 ~~~~~------------------~~l~~~~~~L~~gG~l~~~~~~~-----~~~~~~~~~l~~-~f~  231 (237)
                      +|+..                  --+.++...++|.-.++=.++..     ...+.+.+.|++ |+.
T Consensus        75 pPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~  141 (328)
T COG0270          75 PPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRPKFFVLENVKGLLSSKGQTFDEIKKELEELGYG  141 (328)
T ss_pred             CCCcchhhcCcccCCcCccceeeHHHHHHHHhhCCCEEEEecCchHHhcCchHHHHHHHHHHHcCCc
Confidence            66431                  13556677778832222112222     245667777777 664

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=93.94  E-value=0.39  Score=39.13  Aligned_cols=107  Identities=13%  Similarity=0.107  Sum_probs=77.4

Q ss_pred             HHhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cccCCCCCCC
Q 026506          101 IMYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPDE  177 (237)
Q Consensus       101 ~~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~  177 (237)
                      .+...++.|++|+.-|+ |. |.+.-++++.+  .+.|++.=-+++.+...+..   .|.+..+++... |.. ..+...
T Consensus       146 ~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~--Gc~VVGsaGS~EKv~ll~~~---~G~d~afNYK~e~~~~-~aL~r~  219 (343)
T KOG1196|consen  146 YEICSPKKGETVFVSAASGAVGQLVGQFAKLM--GCYVVGSAGSKEKVDLLKTK---FGFDDAFNYKEESDLS-AALKRC  219 (343)
T ss_pred             HHhcCCCCCCEEEEeeccchhHHHHHHHHHhc--CCEEEEecCChhhhhhhHhc---cCCccceeccCccCHH-HHHHHh
Confidence            34556788998887765 44 88899999987  36899998899999988875   466665777665 443 222223


Q ss_pred             CCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCC
Q 026506          178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       178 ~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      ...+.|+-|.|....  .++.+...|+..|++++-+..
T Consensus       220 ~P~GIDiYfeNVGG~--~lDavl~nM~~~gri~~CG~I  255 (343)
T KOG1196|consen  220 FPEGIDIYFENVGGK--MLDAVLLNMNLHGRIAVCGMI  255 (343)
T ss_pred             CCCcceEEEeccCcH--HHHHHHHhhhhccceEeeeee
Confidence            336799988887754  678888889999998865543

>PRK11524 putative methyltransferase; Provisional

Probab=93.83  E-value=0.12  Score=42.29  Aligned_cols=66  Identities=24%  Similarity=0.252  Sum_probs=42.7

Q ss_pred             EEEEEccccC--CCCCCCCCCCCCEEEEeCCCh---------------------hchHHHHHhcccCCCEEEEEeCCHHH
Q 026506          162 VTVGVRDIQG--QGFPDEFSGLADSIFLDLPQP---------------------WLAIPSAKKMLKQDGILCSFSPCIEQ  218 (237)
Q Consensus       162 i~~~~~d~~~--~~~~~~~~~~~D~v~~~~~~~---------------------~~~l~~~~~~L~~gG~l~~~~~~~~~  218 (237)
                      ..+..+|..+  ..++.   +++|+|+.|+|-.                     ...+..+.++|||||.+++.... ..
T Consensus         9 ~~i~~gD~~~~l~~l~~---~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~-~~   84 (284)
T PRK11524          9 KTIIHGDALTELKKIPS---ESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST-EN   84 (284)
T ss_pred             CEEEeccHHHHHHhccc---CcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc-hh
Confidence            4567777765  23443   6899999988721                     14788999999999999976543 23


Q ss_pred             HHHHHHHHHhcCc
Q 026506          219 VQRSCESLRLNFT  231 (237)
Q Consensus       219 ~~~~~~~l~~~f~  231 (237)
                      +..+...++.+|.
T Consensus        85 ~~~~~~~~~~~f~   97 (284)
T PRK11524         85 MPFIDLYCRKLFT   97 (284)
T ss_pred             hhHHHHHHhcCcc
Confidence            3333334443553

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=93.83  E-value=0.11  Score=45.20  Aligned_cols=104  Identities=12%  Similarity=0.186  Sum_probs=62.8

Q ss_pred             CEEEEEccCccHHHHHHHHHhCCCcEEEEEeCC----HHHHHHHHHHHHHcCCCCcEEEEEccccC--CCCCCCCCCCCC
Q 026506          110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFH----EQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLAD  183 (237)
Q Consensus       110 ~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~----~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~~~~D  183 (237)
                      ..|+|+.+|.|++++++...     .|++...-    ++.+...-+    .|+-.    .--|..+  ..+|    ..||
T Consensus       367 RNVMDMnAg~GGFAAAL~~~-----~VWVMNVVP~~~~ntL~vIyd----RGLIG----~yhDWCE~fsTYP----RTYD  429 (506)
T PF03141_consen  367 RNVMDMNAGYGGFAAALIDD-----PVWVMNVVPVSGPNTLPVIYD----RGLIG----VYHDWCEAFSTYP----RTYD  429 (506)
T ss_pred             eeeeeecccccHHHHHhccC-----CceEEEecccCCCCcchhhhh----cccch----hccchhhccCCCC----cchh
Confidence            47999999999999887653     25555433    333333333    23221    2224432  2233    6799


Q ss_pred             EEEEeCC--------ChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCc
Q 026506          184 SIFLDLP--------QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT  231 (237)
Q Consensus       184 ~v~~~~~--------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~  231 (237)
                      +|-.+.-        ....++-++.|+|+|+|.++ +-...+-+.++.+.++. .|.
T Consensus       430 LlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~i-iRD~~~vl~~v~~i~~~lrW~  485 (506)
T PF03141_consen  430 LLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVI-IRDTVDVLEKVKKIAKSLRWE  485 (506)
T ss_pred             heehhhhhhhhcccccHHHHHHHhHhhcCCCceEE-EeccHHHHHHHHHHHHhCcce
Confidence            9754321        22357889999999999988 44445566666666665 443

; GO: 0008168 methyltransferase activity

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=93.70  E-value=0.54  Score=35.42  Aligned_cols=79  Identities=16%  Similarity=0.184  Sum_probs=43.8

Q ss_pred             EEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCH------------------HHHHHHHHHHHHcCCCCcEEEEEccccC
Q 026506          111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHE------------------QRAASAREDFERTGVSSFVTVGVRDIQG  171 (237)
Q Consensus       111 ~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~------------------~~~~~a~~~~~~~~~~~~i~~~~~d~~~  171 (237)
                      +|+.+|||. |......+.+. +-.+++.+|.+.                  ...+.+++++.+.+-.-.+......+..
T Consensus         1 ~VlViG~GglGs~ia~~La~~-Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~   79 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARS-GVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE   79 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence            478999997 66555555554 346788888653                  3455556666554432224444444332


Q ss_pred             CCCCCCCCCCCCEEEEeCCC
Q 026506          172 QGFPDEFSGLADSIFLDLPQ  191 (237)
Q Consensus       172 ~~~~~~~~~~~D~v~~~~~~  191 (237)
                      ..... .-..+|+|+.....
T Consensus        80 ~~~~~-~l~~~DlVi~~~d~   98 (174)
T cd01487          80 NNLEG-LFGDCDIVVEAFDN   98 (174)
T ss_pred             hhHHH-HhcCCCEEEECCCC
Confidence            11111 11469998866443

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=93.68  E-value=1.1  Score=41.03  Aligned_cols=98  Identities=13%  Similarity=0.098  Sum_probs=63.0

Q ss_pred             CCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCC-CCCCCCCCCEEE
Q 026506          109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF-PDEFSGLADSIF  186 (237)
Q Consensus       109 ~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~~D~v~  186 (237)
                      ..+|+.+|+|. |......+...  ...++++|.|++.++.+++    .|    ..+..+|..+... ....-..+|.++
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~~~L~~agi~~A~~vv  469 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSS--GVKMTVLDHDPDHIETLRK----FG----MKVFYGDATRMDLLESAGAAKAEVLI  469 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHh----cC----CeEEEEeCCCHHHHHhcCCCcCCEEE
Confidence            36899999998 66655555442  3579999999999998876    24    5678889876322 111125789988


Q ss_pred             EeCCChhch--HHHHHhcccCCCEEEEEeCCH
Q 026506          187 LDLPQPWLA--IPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       187 ~~~~~~~~~--l~~~~~~L~~gG~l~~~~~~~  216 (237)
                      +...++...  +-...+.+.|.-.+++-....
T Consensus       470 v~~~d~~~n~~i~~~ar~~~p~~~iiaRa~d~  501 (621)
T PRK03562        470 NAIDDPQTSLQLVELVKEHFPHLQIIARARDV  501 (621)
T ss_pred             EEeCCHHHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            877665432  223344556776666544433

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=93.64  E-value=0.026  Score=39.98  Aligned_cols=64  Identities=22%  Similarity=0.378  Sum_probs=40.7

Q ss_pred             EEEEEccccCCCCCCCCCCCCCEEEEeCCCh------h--chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCc
Q 026506          162 VTVGVRDIQGQGFPDEFSGLADSIFLDLPQP------W--LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT  231 (237)
Q Consensus       162 i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~------~--~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~  231 (237)
                      +++..+|+.+ .++. ....+|+|++|.-.|      |  ++++.+.+.++|||++..|+..    ..+.+.|.+ ||.
T Consensus        33 L~L~~gDa~~-~l~~-l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a----~~Vr~~L~~aGF~  105 (124)
T PF05430_consen   33 LTLWFGDARE-MLPQ-LDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSSA----GAVRRALQQAGFE  105 (124)
T ss_dssp             EEEEES-HHH-HHHH-B-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--B----HHHHHHHHHCTEE
T ss_pred             EEEEEcHHHH-HHHh-CcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeech----HHHHHHHHHcCCE
Confidence            5667788764 1211 116799999986322      2  6899999999999999988763    336667777 775

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=93.57  E-value=0.16  Score=36.97  Aligned_cols=103  Identities=20%  Similarity=0.193  Sum_probs=60.3

Q ss_pred             EEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc------ccC-CCCCCCCCCCCC
Q 026506          112 VLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD------IQG-QGFPDEFSGLAD  183 (237)
Q Consensus       112 vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d------~~~-~~~~~~~~~~~D  183 (237)
                      |+.+|+|. |.+..+.+..  ...+|..+..++ .++..++.    +    +.+...+      ... ...+......+|
T Consensus         1 I~I~G~GaiG~~~a~~L~~--~g~~V~l~~r~~-~~~~~~~~----g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D   69 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQ--AGHDVTLVSRSP-RLEAIKEQ----G----LTITGPDGDETVQPPIVISAPSADAGPYD   69 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHH--TTCEEEEEESHH-HHHHHHHH----C----EEEEETTEEEEEEEEEEESSHGHHHSTES
T ss_pred             CEEECcCHHHHHHHHHHHH--CCCceEEEEccc-cHHhhhhe----e----EEEEecccceecccccccCcchhccCCCc
Confidence            67888888 6655555544  246899998866 66654442    3    2222111      000 001100126799


Q ss_pred             EEEEeCCCh--hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHH
Q 026506          184 SIFLDLPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCES  225 (237)
Q Consensus       184 ~v~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~  225 (237)
                      +||+.....  .+.++.+.+.+.++..++++.......+.+.+.
T Consensus        70 ~viv~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~  113 (151)
T PF02558_consen   70 LVIVAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEY  113 (151)
T ss_dssp             EEEE-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCH
T ss_pred             EEEEEecccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHH
Confidence            999887543  357888999999998888776655554444433

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=93.50  E-value=0.22  Score=38.78  Aligned_cols=69  Identities=14%  Similarity=0.159  Sum_probs=50.5

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG  171 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~  171 (237)
                      .++..++.-..+.|.+||.|+|+.+..+...  +..+...+|.++.+..-.+...+.  .+.+..++..|+..
T Consensus        41 KIvK~A~~~~~~~v~eIgPgpggitR~il~a--~~~RL~vVE~D~RFip~LQ~L~EA--a~~~~~IHh~D~LR  109 (326)
T KOG0821|consen   41 KIVKKAGNLTNAYVYEIGPGPGGITRSILNA--DVARLLVVEKDTRFIPGLQMLSEA--APGKLRIHHGDVLR  109 (326)
T ss_pred             HHHHhccccccceeEEecCCCCchhHHHHhc--chhheeeeeeccccChHHHHHhhc--CCcceEEeccccce
Confidence            4666677677789999999999999998876  346788999988876665554432  22347777777754

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=93.49  E-value=0.3  Score=41.58  Aligned_cols=78  Identities=18%  Similarity=0.055  Sum_probs=50.5

Q ss_pred             CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506          110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD  188 (237)
Q Consensus       110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~  188 (237)
                      .+||.||||. |....+.+.+- ...+|+..|.+.+..+.+....    .. +++....|+.+..-....-..+|+|+..
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~-~d~~V~iAdRs~~~~~~i~~~~----~~-~v~~~~vD~~d~~al~~li~~~d~VIn~   75 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQN-GDGEVTIADRSKEKCARIAELI----GG-KVEALQVDAADVDALVALIKDFDLVINA   75 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHhhc----cc-cceeEEecccChHHHHHHHhcCCEEEEe
Confidence            5799999987 55555554442 3379999999988888776642    11 4788888887621111111457998876


Q ss_pred             CCChh
Q 026506          189 LPQPW  193 (237)
Q Consensus       189 ~~~~~  193 (237)
                      .|.+.
T Consensus        76 ~p~~~   80 (389)
T COG1748          76 APPFV   80 (389)
T ss_pred             CCchh
Confidence            66543

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=93.49  E-value=1.6  Score=34.82  Aligned_cols=110  Identities=15%  Similarity=0.089  Sum_probs=68.3

Q ss_pred             cCCCCCCEEEEEccCccHHHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506          104 LELVPGCLVLESGTGSGSLTTSLARAVA---PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG  180 (237)
Q Consensus       104 ~~~~~~~~vldiG~G~G~~~~~~~~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  180 (237)
                      .....+.+.+|+|+|+...+..+...+.   ...+++.+|++...++...+.+...-..-.+.-..+|... .+....++
T Consensus        74 a~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~-~La~~~~~  152 (321)
T COG4301          74 ASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYEL-ALAELPRG  152 (321)
T ss_pred             HHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHH-HHhcccCC
Confidence            3445578999999999988877766552   2368999999999887655544332212225666777753 22221112


Q ss_pred             CCCEE-EEe-------CCChhchHHHHHhcccCCCEEEEEeC
Q 026506          181 LADSI-FLD-------LPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       181 ~~D~v-~~~-------~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +--++ |+.       +..-..++.++...|+||-.+.+-+.
T Consensus       153 ~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvD  194 (321)
T COG4301         153 GRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVD  194 (321)
T ss_pred             CeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecc
Confidence            22222 221       12223589999999999999885443

>PRK06940 short chain dehydrogenase; Provisional

Probab=93.41  E-value=0.61  Score=37.74  Aligned_cols=100  Identities=17%  Similarity=0.229  Sum_probs=60.0

Q ss_pred             CEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CC----C-CCCCCCC
Q 026506          110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FP----D-EFSGLAD  183 (237)
Q Consensus       110 ~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~----~-~~~~~~D  183 (237)
                      ..++..|+  |+++.++++.+....+|+.++.+++.++...+.+...+  ..+.+...|+.+.. ..    . ...+.+|
T Consensus         3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id   78 (275)
T PRK06940          3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVT   78 (275)
T ss_pred             CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence            45666665  46777777766545789999998877665555444333  23667777876510 00    0 0015689


Q ss_pred             EEEEeCCCh-----------------hchHHHHHhcccCCCEEEEEe
Q 026506          184 SIFLDLPQP-----------------WLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       184 ~v~~~~~~~-----------------~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .++.+....                 ..+++.+.+.++++|.+++++
T Consensus        79 ~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~is  125 (275)
T PRK06940         79 GLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIA  125 (275)
T ss_pred             EEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEE
Confidence            988765311                 123556666777777766554

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=93.35  E-value=0.49  Score=39.70  Aligned_cols=81  Identities=17%  Similarity=0.163  Sum_probs=48.1

Q ss_pred             CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCH---------------------HHHHHHHHHHHHcCCCCcEEEE
Q 026506          108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHE---------------------QRAASAREDFERTGVSSFVTVG  165 (237)
Q Consensus       108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~---------------------~~~~~a~~~~~~~~~~~~i~~~  165 (237)
                      ...+|+.+|||. |......+... +-++++.+|.+.                     ...+.+++++...+-.-.++..
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~  101 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRA-GIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV  101 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence            357899999997 66655555554 346899898753                     2456666666655433335555


Q ss_pred             EccccCCCCCCCCCCCCCEEEEeCC
Q 026506          166 VRDIQGQGFPDEFSGLADSIFLDLP  190 (237)
Q Consensus       166 ~~d~~~~~~~~~~~~~~D~v~~~~~  190 (237)
                      ..+.....+.+ .-..+|+|+....
T Consensus       102 ~~~~~~~~~~~-~~~~~DlVid~~D  125 (338)
T PRK12475        102 VTDVTVEELEE-LVKEVDLIIDATD  125 (338)
T ss_pred             eccCCHHHHHH-HhcCCCEEEEcCC
Confidence            55553211111 1146999776543

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=93.22  E-value=1.2  Score=40.50  Aligned_cols=98  Identities=14%  Similarity=0.023  Sum_probs=62.7

Q ss_pred             CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCC-CCCCCCCCCEEEE
Q 026506          110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF-PDEFSGLADSIFL  187 (237)
Q Consensus       110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~~D~v~~  187 (237)
                      .+|+.+|+|. |......+..  ....++++|.|++.++.+++    .|    ..+..+|..+... ....-.++|.++.
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~--~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~~~L~~agi~~A~~vv~  470 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMA--NKMRITVLERDISAVNLMRK----YG----YKVYYGDATQLELLRAAGAEKAEAIVI  470 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHh----CC----CeEEEeeCCCHHHHHhcCCccCCEEEE
Confidence            5788888887 5544444443  23579999999999998876    34    5568888876222 1111257899888


Q ss_pred             eCCChhch--HHHHHhcccCCCEEEEEeCCHH
Q 026506          188 DLPQPWLA--IPSAKKMLKQDGILCSFSPCIE  217 (237)
Q Consensus       188 ~~~~~~~~--l~~~~~~L~~gG~l~~~~~~~~  217 (237)
                      ..+++...  +-...+.+.|...++.-.....
T Consensus       471 ~~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~  502 (601)
T PRK03659        471 TCNEPEDTMKIVELCQQHFPHLHILARARGRV  502 (601)
T ss_pred             EeCCHHHHHHHHHHHHHHCCCCeEEEEeCCHH
Confidence            77765433  2233555678877775554433

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=93.15  E-value=0.64  Score=38.92  Aligned_cols=103  Identities=19%  Similarity=0.223  Sum_probs=58.9

Q ss_pred             CCCCCCEEEEEccCc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc---ccCCCCCCCC-
Q 026506          105 ELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD---IQGQGFPDEF-  178 (237)
Q Consensus       105 ~~~~~~~vldiG~G~--G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~~~~-  178 (237)
                      .+.+|++++..|+++  |..+..+++..+....++++.. ++..+.+++    .|.+..+.....+   .......... 
T Consensus       148 ~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~~-~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~~~~~  222 (352)
T cd08247         148 KLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTCS-SRSAELNKK----LGADHFIDYDAHSGVKLLKPVLENVKG  222 (352)
T ss_pred             ccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEeC-hhHHHHHHH----hCCCEEEecCCCcccchHHHHHHhhcC
Confidence            478899999999864  6666777776433226777654 444444432    4553322221112   1100011111 


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhccc---CCCEEEEEe
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLK---QDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~---~gG~l~~~~  213 (237)
                      ..++|+++...... ..+..+.+.|+   ++|+++.++
T Consensus       223 ~~~~d~vl~~~g~~-~~~~~~~~~l~~~~~~G~~v~~~  259 (352)
T cd08247         223 QGKFDLILDCVGGY-DLFPHINSILKPKSKNGHYVTIV  259 (352)
T ss_pred             CCCceEEEECCCCH-HHHHHHHHHhCccCCCCEEEEEe
Confidence            25699877654432 36788889999   999998653

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=93.10  E-value=0.59  Score=38.04  Aligned_cols=102  Identities=20%  Similarity=0.165  Sum_probs=61.0

Q ss_pred             cCCCCCCEEEEEccC-c-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCC
Q 026506          104 LELVPGCLVLESGTG-S-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL  181 (237)
Q Consensus       104 ~~~~~~~~vldiG~G-~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  181 (237)
                      ..+.++.+++..|++ . |..+..++...  ..+++.++.+++..+.+++    .+....+.....+..........+.+
T Consensus       135 ~~~~~~~~vlv~g~~~~ig~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~  208 (323)
T cd05276         135 GGLKAGETVLIHGGASGVGTAAIQLAKAL--GARVIATAGSEEKLEACRA----LGADVAINYRTEDFAEEVKEATGGRG  208 (323)
T ss_pred             cCCCCCCEEEEEcCcChHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----cCCCEEEeCCchhHHHHHHHHhCCCC
Confidence            457789999999863 3 56666666665  3568888888887777644    34322112111111110000001146


Q ss_pred             CCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          182 ADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       182 ~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +|+++......  .+....+.++++|+++.++
T Consensus       209 ~d~vi~~~g~~--~~~~~~~~~~~~g~~i~~~  238 (323)
T cd05276         209 VDVILDMVGGD--YLARNLRALAPDGRLVLIG  238 (323)
T ss_pred             eEEEEECCchH--HHHHHHHhhccCCEEEEEe
Confidence            89988655533  3677788899999888664

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.87  E-value=0.59  Score=38.20  Aligned_cols=96  Identities=14%  Similarity=0.190  Sum_probs=55.5

Q ss_pred             CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc---CC-----C--------CcEEEEEccccCC
Q 026506          110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT---GV-----S--------SFVTVGVRDIQGQ  172 (237)
Q Consensus       110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~---~~-----~--------~~i~~~~~d~~~~  172 (237)
                      .+|..+|+|. |.-....+..  ...+|+.+|.+++.++.+.++....   +.     .        .++.+ ..|.. .
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~-~   77 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAV--SGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLK-A   77 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHH-H
Confidence            3688999987 4433222222  2367999999999998876543211   10     0        01221 11211 1


Q ss_pred             CCCCCCCCCCCEEEEeCCChh----chHHHHHhcccCCCEEEEEeC
Q 026506          173 GFPDEFSGLADSIFLDLPQPW----LAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       173 ~~~~~~~~~~D~v~~~~~~~~----~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ..     ...|+|+...+...    .++.++.+.++++..++....
T Consensus        78 ~~-----~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tS  118 (288)
T PRK09260         78 AV-----ADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTS  118 (288)
T ss_pred             hh-----cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence            11     45899999888664    346667777888776654433

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=92.74  E-value=0.46  Score=37.48  Aligned_cols=82  Identities=16%  Similarity=0.124  Sum_probs=47.7

Q ss_pred             CCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeC-------------------CHHHHHHHHHHHHHcCCCCcEEEEEcc
Q 026506          109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDF-------------------HEQRAASAREDFERTGVSSFVTVGVRD  168 (237)
Q Consensus       109 ~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~-------------------~~~~~~~a~~~~~~~~~~~~i~~~~~d  168 (237)
                      ..+|+.+|||. |......+.+.+ -++++.+|.                   .....+.+++++...+-.-.++.....
T Consensus        21 ~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~   99 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNER   99 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecce
Confidence            57999999998 666655555553 477888853                   344566777777665432235554444


Q ss_pred             ccCCCCCCCCCCCCCEEEEeCCCh
Q 026506          169 IQGQGFPDEFSGLADSIFLDLPQP  192 (237)
Q Consensus       169 ~~~~~~~~~~~~~~D~v~~~~~~~  192 (237)
                      +......+ .-..+|+|+.....+
T Consensus       100 i~~~~~~~-~~~~~DvVi~~~d~~  122 (228)
T cd00757         100 LDAENAEE-LIAGYDLVLDCTDNF  122 (228)
T ss_pred             eCHHHHHH-HHhCCCEEEEcCCCH
Confidence            32111111 114599988665433

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK08324 short chain dehydrogenase; Validated

Probab=92.72  E-value=0.74  Score=42.54  Aligned_cols=104  Identities=16%  Similarity=0.215  Sum_probs=61.0

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-C----CC--CC
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-F----PD--EF  178 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~----~~--~~  178 (237)
                      .++.++|..|+++ +++..+++.+ ....+|+.+|.+++.++.+.+.+...   ..+.+...|+.+.. .    ..  ..
T Consensus       420 l~gk~vLVTGasg-gIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~  495 (681)
T PRK08324        420 LAGKVALVTGAAG-GIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALA  495 (681)
T ss_pred             CCCCEEEEecCCC-HHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            3578999998643 3333333332 12358999999988776665543221   23777778876511 1    00  00


Q ss_pred             CCCCCEEEEeCCC------------------------hhchHHHHHhcccC---CCEEEEEeC
Q 026506          179 SGLADSIFLDLPQ------------------------PWLAIPSAKKMLKQ---DGILCSFSP  214 (237)
Q Consensus       179 ~~~~D~v~~~~~~------------------------~~~~l~~~~~~L~~---gG~l~~~~~  214 (237)
                      .+++|+||.+...                        ...+++.+.+.+++   +|.+++++.
T Consensus       496 ~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS  558 (681)
T PRK08324        496 FGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS  558 (681)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence            1468999876541                        12345666777766   688887654

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=92.70  E-value=2  Score=35.10  Aligned_cols=96  Identities=18%  Similarity=0.167  Sum_probs=53.5

Q ss_pred             EEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC---CcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS---SFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       111 ~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      +|+.+|+|. |......+...  ..+|+.++.+++.++..++.    +..   ..... ..... ..... . ..+|+|+
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~----g~~~~~~~~~~-~~~~~-~~~~~-~-~~~d~vi   71 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQA--GHDVTLVARRGAHLDALNEN----GLRLEDGEITV-PVLAA-DDPAE-L-GPQDLVI   71 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhC--CCeEEEEECChHHHHHHHHc----CCcccCCceee-cccCC-CChhH-c-CCCCEEE
Confidence            688999988 54443333332  35799999877776655542    321   10100 00001 11111 1 5699999


Q ss_pred             EeCCCh--hchHHHHHhcccCCCEEEEEeCCH
Q 026506          187 LDLPQP--WLAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       187 ~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                      +..+..  ..+++.+...+.++..++......
T Consensus        72 la~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~  103 (304)
T PRK06522         72 LAVKAYQLPAALPSLAPLLGPDTPVLFLQNGV  103 (304)
T ss_pred             EecccccHHHHHHHHhhhcCCCCEEEEecCCC
Confidence            876643  356777777777777777554433

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=92.70  E-value=0.9  Score=37.11  Aligned_cols=101  Identities=20%  Similarity=0.203  Sum_probs=60.7

Q ss_pred             HhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC-CC
Q 026506          102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-EF  178 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~  178 (237)
                      ....+.++.+++..|+ |. |..+..++...+  .++++++.+ +..+.+++    .+....+.... +... .+.. ..
T Consensus       138 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g--~~v~~~~~~-~~~~~~~~----~g~~~~~~~~~-~~~~-~~~~~~~  208 (326)
T cd08272         138 DRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAG--ARVYATASS-EKAAFARS----LGADPIIYYRE-TVVE-YVAEHTG  208 (326)
T ss_pred             HhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcC--CEEEEEech-HHHHHHHH----cCCCEEEecch-hHHH-HHHHhcC
Confidence            3456788999999984 44 666667777753  568888776 76666644    35432112111 1111 0110 11


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +..+|+++.....  ..+....+.++++|+++.++
T Consensus       209 ~~~~d~v~~~~~~--~~~~~~~~~l~~~g~~v~~~  241 (326)
T cd08272         209 GRGFDVVFDTVGG--ETLDASFEAVALYGRVVSIL  241 (326)
T ss_pred             CCCCcEEEECCCh--HHHHHHHHHhccCCEEEEEe
Confidence            1468998755443  25777889999999988664

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=92.68  E-value=0.25  Score=39.63  Aligned_cols=48  Identities=15%  Similarity=0.218  Sum_probs=37.2

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCC-------CcEEEEEeCCHHHHHHHHHHHHH
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAP-------TGHVYTFDFHEQRAASAREDFER  155 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~-------~~~v~~vD~~~~~~~~a~~~~~~  155 (237)
                      ..-+|+|+|+|.|.++..++..+..       ..+++.+|.|+.+.+.-++++..
T Consensus        18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            3469999999999999999887743       25899999999998888877654

; PDB: 4F3N_A 1ZKD_B.

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=92.63  E-value=1.2  Score=36.85  Aligned_cols=103  Identities=17%  Similarity=0.056  Sum_probs=59.4

Q ss_pred             CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-----CcEEEEEccccCCCCCCCCCCCCC
Q 026506          110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS-----SFVTVGVRDIQGQGFPDEFSGLAD  183 (237)
Q Consensus       110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~i~~~~~d~~~~~~~~~~~~~~D  183 (237)
                      .+|+.+|+|. |++....+...  ...|+.++.+++.++..++.   .|+.     ....+. .... .  ++ ..+.+|
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~--G~~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~-~~~~-~--~~-~~~~~D   72 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARA--GLPVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYA-IPAE-T--AD-AAEPIH   72 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhC--CCCeEEEEechHHHHHHhhc---CCeEEeeCCcceeec-cCCC-C--cc-cccccC
Confidence            5799999998 66554444443  25788888877666655542   1211     101110 0000 0  11 115799


Q ss_pred             EEEEeCCC--hhchHHHHHhcccCCCEEEEEeCCHHHHHHH
Q 026506          184 SIFLDLPQ--PWLAIPSAKKMLKQDGILCSFSPCIEQVQRS  222 (237)
Q Consensus       184 ~v~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~  222 (237)
                      +|++..-.  ..+.++.+...+.++..++.+.--....+.+
T Consensus        73 ~viv~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l  113 (305)
T PRK05708         73 RLLLACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAV  113 (305)
T ss_pred             EEEEECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHH
Confidence            99987543  3457888888899999887665443333333

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=92.58  E-value=0.48  Score=33.93  Aligned_cols=101  Identities=17%  Similarity=0.108  Sum_probs=57.2

Q ss_pred             CCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeC-------------------CHHHHHHHHHHHHHcCCCCcEEEEEcc
Q 026506          109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDF-------------------HEQRAASAREDFERTGVSSFVTVGVRD  168 (237)
Q Consensus       109 ~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~-------------------~~~~~~~a~~~~~~~~~~~~i~~~~~d  168 (237)
                      ..+|+.+|||. |......+.+.+ -++++.+|.                   .....+.+++++......-.++....+
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~G-v~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~   80 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSG-VGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK   80 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHT-TSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhC-CCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence            36899999997 766655555553 478988883                   233567777777765433336666666


Q ss_pred             ccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEE
Q 026506          169 IQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       169 ~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                      +......... ..+|+|+..... ......+.+.++..+.-++.
T Consensus        81 ~~~~~~~~~~-~~~d~vi~~~d~-~~~~~~l~~~~~~~~~p~i~  122 (135)
T PF00899_consen   81 IDEENIEELL-KDYDIVIDCVDS-LAARLLLNEICREYGIPFID  122 (135)
T ss_dssp             CSHHHHHHHH-HTSSEEEEESSS-HHHHHHHHHHHHHTT-EEEE
T ss_pred             cccccccccc-cCCCEEEEecCC-HHHHHHHHHHHHHcCCCEEE
Confidence            5221111111 368998776554 33444444455545544433

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=92.57  E-value=0.69  Score=38.38  Aligned_cols=104  Identities=19%  Similarity=0.176  Sum_probs=56.4

Q ss_pred             HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE-EccccCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG-VRDIQGQGFPDE  177 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~-~~d~~~~~~~~~  177 (237)
                      ..+++......++..+|||. +......+....+-.+|...+.+++..+...+.+...+    +.+. ..|.. ...   
T Consensus       119 a~~~La~~~~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~----~~v~~~~~~~-~av---  190 (313)
T PF02423_consen  119 AARYLARPDARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLG----VPVVAVDSAE-EAV---  190 (313)
T ss_dssp             HHHHHS-TT--EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCC----TCEEEESSHH-HHH---
T ss_pred             HHHHhCcCCCceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcccc----ccceeccchh-hhc---
Confidence            44566656667999999999 76665555555567899999999998888777776533    2222 23332 222   


Q ss_pred             CCCCCCEEEEeCCChh--chHHHHHhcccCCCEEEEEeCC
Q 026506          178 FSGLADSIFLDLPQPW--LAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       178 ~~~~~D~v~~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                        ...|+|+...+...  .++..  +.|+||-.+..++..
T Consensus       191 --~~aDii~taT~s~~~~P~~~~--~~l~~g~hi~~iGs~  226 (313)
T PF02423_consen  191 --RGADIIVTATPSTTPAPVFDA--EWLKPGTHINAIGSY  226 (313)
T ss_dssp             --TTSSEEEE----SSEEESB-G--GGS-TT-EEEE-S-S
T ss_pred             --ccCCEEEEccCCCCCCccccH--HHcCCCcEEEEecCC
Confidence              35899987665544  44442  478888777766543

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=92.50  E-value=2.1  Score=34.78  Aligned_cols=86  Identities=22%  Similarity=0.213  Sum_probs=50.6

Q ss_pred             EEEEEccCc-cH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506          111 LVLESGTGS-GS-LTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD  188 (237)
Q Consensus       111 ~vldiG~G~-G~-~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~  188 (237)
                      +|..+|+|. |. ++..+.+.   ..+|+++|.+++.++.+.+.    +.   +.....+.     ..  ....|+|++.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~---g~~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~-----~~--~~~aDlVila   64 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSL---GHTVYGVSRRESTCERAIER----GL---VDEASTDL-----SL--LKDCDLVILA   64 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHC----CC---cccccCCH-----hH--hcCCCEEEEc
Confidence            578889887 44 33333332   35899999999888776652    32   11111111     11  1458999998


Q ss_pred             CCChh--chHHHHHhcccCCCEEEEEe
Q 026506          189 LPQPW--LAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       189 ~~~~~--~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .|...  +.++++...++++..+.-.+
T Consensus        65 vp~~~~~~~~~~l~~~l~~~~ii~d~~   91 (279)
T PRK07417         65 LPIGLLLPPSEQLIPALPPEAIVTDVG   91 (279)
T ss_pred             CCHHHHHHHHHHHHHhCCCCcEEEeCc
Confidence            87543  35667777777775554333

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=92.49  E-value=0.71  Score=38.69  Aligned_cols=57  Identities=21%  Similarity=0.306  Sum_probs=42.6

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHh---CC----CcEEEEEeCCHHHHHHHHHHHHHc
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAV---AP----TGHVYTFDFHEQRAASAREDFERT  156 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~---~~----~~~v~~vD~~~~~~~~a~~~~~~~  156 (237)
                      +.+.......-.++|+|+|.|.++..+++.+   .|    ..+++.+|+|++..+.=+++++..
T Consensus        69 ~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          69 LWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             HHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            3444555556789999999999998887654   22    478999999999887766666543

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=92.45  E-value=2.9  Score=33.30  Aligned_cols=117  Identities=21%  Similarity=0.226  Sum_probs=79.9

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC---CCCCCCCCCCC
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG---QGFPDEFSGLA  182 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~~~~~~  182 (237)
                      .+++.+ +..-+|+-.++..+.+.   .-++..+|+.|+-....++++.   -+.++.+..+|-..   ..+|..  .+=
T Consensus        87 lN~~~~-l~~YpGSP~lA~~llR~---qDRl~l~ELHp~D~~~L~~~f~---~d~~vrv~~~DG~~~l~a~LPP~--erR  157 (279)
T COG2961          87 LNPGGG-LRYYPGSPLLARQLLRE---QDRLVLTELHPSDAPLLRNNFA---GDRRVRVLRGDGFLALKAHLPPK--ERR  157 (279)
T ss_pred             hCCCCC-cccCCCCHHHHHHHcch---hceeeeeecCccHHHHHHHHhC---CCcceEEEecCcHHHHhhhCCCC--Ccc
Confidence            445544 78889998888777665   3679999999999999988875   23448888888765   223332  345


Q ss_pred             CEEEEeCC-----ChhchHHHHHhccc--CCCEEEEEeCCH--HHHHHHHHHHHh-cCc
Q 026506          183 DSIFLDLP-----QPWLAIPSAKKMLK--QDGILCSFSPCI--EQVQRSCESLRL-NFT  231 (237)
Q Consensus       183 D~v~~~~~-----~~~~~l~~~~~~L~--~gG~l~~~~~~~--~~~~~~~~~l~~-~f~  231 (237)
                      -+|++|+|     +...+++.+.+.++  ++|+..++-|..  .+.+++.+.|+. +..
T Consensus       158 glVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~L~~~~i~  216 (279)
T COG2961         158 GLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRALEALGIR  216 (279)
T ss_pred             eEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHHHhhcCcc
Confidence            67889987     22334444444444  677777787765  667888888887 553

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=92.38  E-value=0.95  Score=36.92  Aligned_cols=103  Identities=20%  Similarity=0.157  Sum_probs=61.3

Q ss_pred             hcCCCCCCEEEEEccCc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506          103 YLELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG  180 (237)
Q Consensus       103 ~~~~~~~~~vldiG~G~--G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  180 (237)
                      ...+.++.+++..|++.  |..+..++...  ..+++++..+++..+.+++    .+....+.....++.........+.
T Consensus       134 ~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~  207 (325)
T TIGR02824       134 RGGLKAGETVLIHGGASGIGTTAIQLAKAF--GARVFTTAGSDEKCAACEA----LGADIAINYREEDFVEVVKAETGGK  207 (325)
T ss_pred             hcCCCCCCEEEEEcCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEecCchhHHHHHHHHcCCC
Confidence            45678899999998632  55666666665  3678888888887776643    3442211111111111000001114


Q ss_pred             CCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       181 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ++|+++.....  ..+..+.+.++++|+++.++
T Consensus       208 ~~d~~i~~~~~--~~~~~~~~~l~~~g~~v~~g  238 (325)
T TIGR02824       208 GVDVILDIVGG--SYLNRNIKALALDGRIVQIG  238 (325)
T ss_pred             CeEEEEECCch--HHHHHHHHhhccCcEEEEEe
Confidence            58997765443  25777888999999998664

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>PRK08507 prephenate dehydrogenase; Validated

Probab=92.36  E-value=1.9  Score=35.02  Aligned_cols=91  Identities=21%  Similarity=0.318  Sum_probs=51.4

Q ss_pred             EEEEEccCc-cH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506          111 LVLESGTGS-GS-LTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD  188 (237)
Q Consensus       111 ~vldiG~G~-G~-~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~  188 (237)
                      +|..+|+|. |. ++..+... +....++++|.+++..+.+++    .+...   . ..+..  ..     ...|+||+.
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~-g~~~~v~~~d~~~~~~~~~~~----~g~~~---~-~~~~~--~~-----~~aD~Vila   65 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEK-GLISKVYGYDHNELHLKKALE----LGLVD---E-IVSFE--EL-----KKCDVIFLA   65 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhc-CCCCEEEEEcCCHHHHHHHHH----CCCCc---c-cCCHH--HH-----hcCCEEEEe
Confidence            577888876 43 33333322 222479999999988776643    34321   1 11211  11     238999998


Q ss_pred             CCChh--chHHHHHhcccCCCEEEEEeCCHHH
Q 026506          189 LPQPW--LAIPSAKKMLKQDGILCSFSPCIEQ  218 (237)
Q Consensus       189 ~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~~  218 (237)
                      .|...  +.+..+.. ++++..++-.+.....
T Consensus        66 vp~~~~~~~~~~l~~-l~~~~iv~d~gs~k~~   96 (275)
T PRK08507         66 IPVDAIIEILPKLLD-IKENTTIIDLGSTKAK   96 (275)
T ss_pred             CcHHHHHHHHHHHhc-cCCCCEEEECccchHH
Confidence            87543  45666666 7777766644443333

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=92.31  E-value=0.26  Score=40.89  Aligned_cols=68  Identities=16%  Similarity=0.198  Sum_probs=45.7

Q ss_pred             EEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCC
Q 026506          112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP  190 (237)
Q Consensus       112 vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~  190 (237)
                      |+|+.||.|++..-+...  +-..+.++|+++.+.+..+.|...       .+..+|+.+......  ..+|+++..+|
T Consensus         1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~~-------~~~~~Di~~~~~~~~--~~~dvl~gg~P   68 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFGN-------KVPFGDITKISPSDI--PDFDILLGGFP   68 (315)
T ss_pred             CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCCC-------CCCccChhhhhhhhC--CCcCEEEecCC
Confidence            589999999999777654  335577899999999988887431       223456654221111  35899876655

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=92.23  E-value=1.8  Score=35.63  Aligned_cols=99  Identities=13%  Similarity=0.097  Sum_probs=58.6

Q ss_pred             cCCC-CCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506          104 LELV-PGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG  180 (237)
Q Consensus       104 ~~~~-~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  180 (237)
                      +... ++.++|..|+ |+ |..+.++++.++  .++++++.+++..+.+++    .|....+...  +.. ........+
T Consensus       141 ~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G--~~vi~~~~~~~~~~~~~~----~g~~~~~~~~--~~~-~~~~~~~~~  211 (324)
T cd08288         141 HGVTPGDGPVLVTGAAGGVGSVAVALLARLG--YEVVASTGRPEEADYLRS----LGASEIIDRA--ELS-EPGRPLQKE  211 (324)
T ss_pred             cCcCCCCCEEEEECCCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHh----cCCCEEEEcc--hhh-HhhhhhccC
Confidence            3444 5679999997 55 777888888863  578888888888877754    4553312211  111 111111113


Q ss_pred             CCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       181 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ++|.++-....  ..+..+...++.+|.++.++
T Consensus       212 ~~~~~~d~~~~--~~~~~~~~~~~~~g~~~~~G  242 (324)
T cd08288         212 RWAGAVDTVGG--HTLANVLAQTRYGGAVAACG  242 (324)
T ss_pred             cccEEEECCcH--HHHHHHHHHhcCCCEEEEEE
Confidence            57775544332  24566667778878777654

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=92.22  E-value=2.5  Score=36.13  Aligned_cols=105  Identities=17%  Similarity=0.226  Sum_probs=65.1

Q ss_pred             HHHHHHhcCCC-CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEEccccCCCC
Q 026506           97 ISFVIMYLELV-PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSF-VTVGVRDIQGQGF  174 (237)
Q Consensus        97 ~~~~~~~~~~~-~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-i~~~~~d~~~~~~  174 (237)
                      ..++++.+... ....|+.++-.-|.++..++.. ++ .  ...|. --.-...++|+..++++.. ++..  +.. ..+
T Consensus        32 de~ll~~~~~~~~~~~~~i~nd~fGal~~~l~~~-~~-~--~~~ds-~~~~~~~~~n~~~n~~~~~~~~~~--~~~-~~~  103 (378)
T PRK15001         32 DEYLLQQLDDTEIRGPVLILNDAFGALSCALAEH-KP-Y--SIGDS-YISELATRENLRLNGIDESSVKFL--DST-ADY  103 (378)
T ss_pred             HHHHHHHHhhcccCCCEEEEcCchhHHHHHHHhC-CC-C--eeehH-HHHHHHHHHHHHHcCCCcccceee--ccc-ccc
Confidence            33455554322 2238999999999999988843 22 2  22342 2334445678888886532 3332  332 233


Q ss_pred             CCCCCCCCCEEEEeCCChhc----hHHHHHhcccCCCEEEEEe
Q 026506          175 PDEFSGLADSIFLDLPQPWL----AIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       175 ~~~~~~~~D~v~~~~~~~~~----~l~~~~~~L~~gG~l~~~~  213 (237)
                      +    +.+|+|++-.|...+    .+..+...|.||+.+++-.
T Consensus       104 ~----~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g~  142 (378)
T PRK15001        104 P----QQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGA  142 (378)
T ss_pred             c----CCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence            4    569999998886653    4666777999999987443

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.19  E-value=1.2  Score=37.07  Aligned_cols=106  Identities=17%  Similarity=0.067  Sum_probs=60.8

Q ss_pred             CEEEEEccCc-cHH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-------cCCC-----CcEEEEEccccCCCCC
Q 026506          110 CLVLESGTGS-GSL-TTSLARAVAPTGHVYTFDFHEQRAASAREDFER-------TGVS-----SFVTVGVRDIQGQGFP  175 (237)
Q Consensus       110 ~~vldiG~G~-G~~-~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-------~~~~-----~~i~~~~~d~~~~~~~  175 (237)
                      .+|..+|+|+ |.- +..++.   ....|+..|.+++.++.+++.+..       .+..     .++.+. .|..     
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~---aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~-----   78 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALA---HGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIE-----   78 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHH-----
Confidence            5799999998 443 333333   247899999999888776554331       1211     111211 1111     


Q ss_pred             CCCCCCCCEEEEeCCChh----chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHH
Q 026506          176 DEFSGLADSIFLDLPQPW----LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL  226 (237)
Q Consensus       176 ~~~~~~~D~v~~~~~~~~----~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l  226 (237)
                      + .-...|+|+...+...    .+++++.+.++|+.+|. .+++.....++.+.+
T Consensus        79 ~-av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIla-SnTS~l~~s~la~~~  131 (321)
T PRK07066         79 A-CVADADFIQESAPEREALKLELHERISRAAKPDAIIA-SSTSGLLPTDFYARA  131 (321)
T ss_pred             H-HhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEE-ECCCccCHHHHHHhc
Confidence            1 0146899999887654    46788888889887444 333333334444333

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.11  E-value=2.8  Score=34.20  Aligned_cols=121  Identities=17%  Similarity=0.160  Sum_probs=71.4

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC------CCCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFSG  180 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~------~~~~  180 (237)
                      .+..|+.-||.+|--..........+.+++.+-...+.++...+.+.+.+..+++.+...|+.+.. .+.      ..-+
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg   90 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFG   90 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcC
Confidence            477889999888643222222222346677777777777777555554443335888899987621 110      1126


Q ss_pred             CCCEEEEeCCCh------------------------hchHHHHHhcccCC--CEEEEE---------------eCCHHHH
Q 026506          181 LADSIFLDLPQP------------------------WLAIPSAKKMLKQD--GILCSF---------------SPCIEQV  219 (237)
Q Consensus       181 ~~D~v~~~~~~~------------------------~~~l~~~~~~L~~g--G~l~~~---------------~~~~~~~  219 (237)
                      +.|+.+.|.+-.                        ....+.+.+.|++.  |.++++               ++....+
T Consensus        91 ~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~~P~~~~Y~ASK~Al  170 (282)
T KOG1205|consen   91 RVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMPLPFRSIYSASKHAL  170 (282)
T ss_pred             CCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccccCCCcccccchHHHHH
Confidence            799988765311                        12345566666544  887744               3444456


Q ss_pred             HHHHHHHHh
Q 026506          220 QRSCESLRL  228 (237)
Q Consensus       220 ~~~~~~l~~  228 (237)
                      .-+.+.||.
T Consensus       171 ~~f~etLR~  179 (282)
T KOG1205|consen  171 EGFFETLRQ  179 (282)
T ss_pred             HHHHHHHHH
Confidence            777777776

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.09  E-value=2.7  Score=34.42  Aligned_cols=92  Identities=16%  Similarity=0.165  Sum_probs=55.0

Q ss_pred             CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-------CC-C--------CcEEEEEccccCC
Q 026506          110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-------GV-S--------SFVTVGVRDIQGQ  172 (237)
Q Consensus       110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-------~~-~--------~~i~~~~~d~~~~  172 (237)
                      .+|..+|+|. |.-....+..  ....|+.+|.+++.++.+.+.+..+       +. .        .++.+ ..|..  
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~--   79 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCAL--AGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLE--   79 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHH--
Confidence            4788999998 4333222222  2368999999999888765543221       21 0        11222 12221  


Q ss_pred             CCCCCCCCCCCEEEEeCCChh----chHHHHHhcccCCCEEEE
Q 026506          173 GFPDEFSGLADSIFLDLPQPW----LAIPSAKKMLKQDGILCS  211 (237)
Q Consensus       173 ~~~~~~~~~~D~v~~~~~~~~----~~l~~~~~~L~~gG~l~~  211 (237)
                      ..     ...|+|+...+...    .+++.+...++++..++.
T Consensus        80 ~~-----~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s  117 (292)
T PRK07530         80 DL-----ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILAT  117 (292)
T ss_pred             Hh-----cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence            11     45899999887642    456777788888887663

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.08  E-value=1.6  Score=35.61  Aligned_cols=94  Identities=17%  Similarity=0.174  Sum_probs=55.2

Q ss_pred             CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--------CCC---------CcEEEEEccccC
Q 026506          110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT--------GVS---------SFVTVGVRDIQG  171 (237)
Q Consensus       110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------~~~---------~~i~~~~~d~~~  171 (237)
                      .+|..+|+|. |.-....+..  ...+|+.+|.+++.++.+++.+...        ...         .++.+ ..|.. 
T Consensus         4 ~kIaViGaG~mG~~iA~~la~--~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~-   79 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAF--HGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLA-   79 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHH-
Confidence            4788999988 4333232222  2368999999999888887653211        110         11221 12221 


Q ss_pred             CCCCCCCCCCCCEEEEeCCChh----chHHHHHhcccCCCEEEEE
Q 026506          172 QGFPDEFSGLADSIFLDLPQPW----LAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       172 ~~~~~~~~~~~D~v~~~~~~~~----~~l~~~~~~L~~gG~l~~~  212 (237)
                      ...     ...|+|+...+...    .+++++.+.++++..+...
T Consensus        80 ~a~-----~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sn  119 (287)
T PRK08293         80 EAV-----KDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATN  119 (287)
T ss_pred             HHh-----cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEEC
Confidence            111     45899999888653    4567777777777665433

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=92.00  E-value=1.3  Score=39.82  Aligned_cols=86  Identities=16%  Similarity=0.111  Sum_probs=51.6

Q ss_pred             hcCCCCCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHc-----CC--CCcEEEEEccccCCC-
Q 026506          103 YLELVPGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERT-----GV--SSFVTVGVRDIQGQG-  173 (237)
Q Consensus       103 ~~~~~~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~-----~~--~~~i~~~~~d~~~~~-  173 (237)
                      ..+.+.|.+||..|+ +|+++..+++.+ ..+.+|++++.+++.++...+.+...     +.  ...+.++.+|+.+.. 
T Consensus        74 ~~~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es  152 (576)
T PLN03209         74 ELDTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ  152 (576)
T ss_pred             ccccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence            445667888888876 455666655443 23468999988887766554433221     11  123778888987521 


Q ss_pred             CCCCCCCCCCEEEEeCC
Q 026506          174 FPDEFSGLADSIFLDLP  190 (237)
Q Consensus       174 ~~~~~~~~~D~v~~~~~  190 (237)
                      +.. .-+++|+||++..
T Consensus       153 I~~-aLggiDiVVn~AG  168 (576)
T PLN03209        153 IGP-ALGNASVVICCIG  168 (576)
T ss_pred             HHH-HhcCCCEEEEccc
Confidence            111 1156899887653

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=91.97  E-value=0.5  Score=39.79  Aligned_cols=45  Identities=18%  Similarity=0.192  Sum_probs=35.7

Q ss_pred             CCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026506          105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASARE  151 (237)
Q Consensus       105 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~  151 (237)
                      +..+-+.++|+|+|.|+++..++-..  +-.|.++|.|....+.|++
T Consensus       150 ~f~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  150 DFTGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             hhcCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHH
Confidence            44566799999999999999888765  4689999999776665544

>PRK08223 hypothetical protein; Validated

Probab=91.95  E-value=1.3  Score=36.24  Aligned_cols=81  Identities=16%  Similarity=0.103  Sum_probs=46.8

Q ss_pred             CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCC-------------------HHHHHHHHHHHHHcCCCCcEEEEEc
Q 026506          108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFH-------------------EQRAASAREDFERTGVSSFVTVGVR  167 (237)
Q Consensus       108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~-------------------~~~~~~a~~~~~~~~~~~~i~~~~~  167 (237)
                      ...+|+.+|||. |...+..+.+.+ -+++..+|.+                   ....+.+++++...+-.-.++....
T Consensus        26 ~~s~VlIvG~GGLGs~va~~LA~aG-VG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~  104 (287)
T PRK08223         26 RNSRVAIAGLGGVGGIHLLTLARLG-IGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPE  104 (287)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHhC-CCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence            357999999997 776655555554 4678888742                   2356667777765543323554444


Q ss_pred             cccCCCCCCCCCCCCCEEEEeCCC
Q 026506          168 DIQGQGFPDEFSGLADSIFLDLPQ  191 (237)
Q Consensus       168 d~~~~~~~~~~~~~~D~v~~~~~~  191 (237)
                      .+......+ .-..+|+|+ |..+
T Consensus       105 ~l~~~n~~~-ll~~~DlVv-D~~D  126 (287)
T PRK08223        105 GIGKENADA-FLDGVDVYV-DGLD  126 (287)
T ss_pred             ccCccCHHH-HHhCCCEEE-ECCC
Confidence            443222111 114699987 4433

>PRK08339 short chain dehydrogenase; Provisional

Probab=91.84  E-value=1.4  Score=35.29  Aligned_cols=80  Identities=20%  Similarity=0.288  Sum_probs=46.3

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC-----CCCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD-----EFSG  180 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~-----~~~~  180 (237)
                      .+.++|..|++.| ++..+++.+ ....+|+.++.+++.++.+.+.+.... ...+.+...|+.+.. ...     ...+
T Consensus         7 ~~k~~lItGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g   84 (263)
T PRK08339          7 SGKLAFTTASSKG-IGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIG   84 (263)
T ss_pred             CCCEEEEeCCCCc-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence            4678888887653 333333332 234689999998887776665544321 123777788876511 100     0014


Q ss_pred             CCCEEEEeC
Q 026506          181 LADSIFLDL  189 (237)
Q Consensus       181 ~~D~v~~~~  189 (237)
                      ..|+++.+.
T Consensus        85 ~iD~lv~na   93 (263)
T PRK08339         85 EPDIFFFST   93 (263)
T ss_pred             CCcEEEECC
Confidence            689888664

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=91.80  E-value=3.4  Score=34.22  Aligned_cols=104  Identities=17%  Similarity=0.191  Sum_probs=60.9

Q ss_pred             CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc----cC-CCCCCCCCCCCC
Q 026506          110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI----QG-QGFPDEFSGLAD  183 (237)
Q Consensus       110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~----~~-~~~~~~~~~~~D  183 (237)
                      .+|+.+|+|. |++....+...+  ..|+.+ ..++.++..+++    |+    .+...+-    .. ..........+|
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g--~~V~~~-~R~~~~~~l~~~----GL----~i~~~~~~~~~~~~~~~~~~~~~~~D   69 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAG--HDVTLL-VRSRRLEALKKK----GL----RIEDEGGNFTTPVVAATDAEALGPAD   69 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCC--CeEEEE-ecHHHHHHHHhC----Ce----EEecCCCccccccccccChhhcCCCC
Confidence            4789999999 766555555532  344444 445446666553    42    2222111    10 011111225799


Q ss_pred             EEEEeCC--ChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHH
Q 026506          184 SIFLDLP--QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCE  224 (237)
Q Consensus       184 ~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~  224 (237)
                      +|++..-  ...+.++.+.+.+++...++++-......+...+
T Consensus        70 lviv~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~  112 (307)
T COG1893          70 LVIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRK  112 (307)
T ss_pred             EEEEEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHH
Confidence            9998764  3346889999999999998877766665554433

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=91.79  E-value=0.58  Score=34.35  Aligned_cols=43  Identities=19%  Similarity=0.336  Sum_probs=27.8

Q ss_pred             EEccCcc--HHHHHHH-HHhCCCcEEEEEeCCHHHHHHHHHH--HHHc
Q 026506          114 ESGTGSG--SLTTSLA-RAVAPTGHVYTFDFHEQRAASARED--FERT  156 (237)
Q Consensus       114 diG~G~G--~~~~~~~-~~~~~~~~v~~vD~~~~~~~~a~~~--~~~~  156 (237)
                      |+|+..|  .....++ +..++..+++++|.+|..++..+++  +..+
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~   48 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN   48 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence            7999999  5555444 3455678999999999999999888  5443

; PDB: 2PY6_A.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=91.77  E-value=1.5  Score=35.45  Aligned_cols=34  Identities=18%  Similarity=0.295  Sum_probs=25.5

Q ss_pred             CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCC
Q 026506          108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFH  142 (237)
Q Consensus       108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~  142 (237)
                      ...+|+.+|||. |..+...+.+.+ -++++.+|.+
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~G-Vg~itLiD~D   63 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTG-IGAITLIDMD   63 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcC-CCEEEEEeCC
Confidence            457899999997 777777666653 3688888854

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=91.77  E-value=5.1  Score=33.15  Aligned_cols=99  Identities=17%  Similarity=0.082  Sum_probs=51.5

Q ss_pred             EEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHH-HHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506          111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAA-SAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD  188 (237)
Q Consensus       111 ~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~-~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~  188 (237)
                      +|..+|+|. |......+...+...++..+|.+++..+ .+.+............+...|..  .+     ...|+|++.
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~--~l-----~~aDiViit   74 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYA--DC-----KGADVVVIT   74 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHH--Hh-----CCCCEEEEc
Confidence            688999988 5544444444333358999999987665 23222111111111233333322  12     458999886


Q ss_pred             CCChh--------------chHHHHHh---cccCCCEEEEEeCCH
Q 026506          189 LPQPW--------------LAIPSAKK---MLKQDGILCSFSPCI  216 (237)
Q Consensus       189 ~~~~~--------------~~l~~~~~---~L~~gG~l~~~~~~~  216 (237)
                      .+.++              ..++++.+   ...|.|.+++.+...
T Consensus        75 a~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~  119 (308)
T cd05292          75 AGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPV  119 (308)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence            54321              12222222   245889888775433

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=91.76  E-value=2.5  Score=31.43  Aligned_cols=91  Identities=19%  Similarity=0.187  Sum_probs=49.1

Q ss_pred             CCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          106 LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       106 ~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      .-.|.+++.+|-|. |.-....++.+  ..+|+++|.+|-..-.|..    .|    .++..  .. ...     ...|+
T Consensus        20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~--Ga~V~V~e~DPi~alqA~~----dG----f~v~~--~~-~a~-----~~adi   81 (162)
T PF00670_consen   20 MLAGKRVVVIGYGKVGKGIARALRGL--GARVTVTEIDPIRALQAAM----DG----FEVMT--LE-EAL-----RDADI   81 (162)
T ss_dssp             --TTSEEEEE--SHHHHHHHHHHHHT--T-EEEEE-SSHHHHHHHHH----TT-----EEE---HH-HHT-----TT-SE
T ss_pred             eeCCCEEEEeCCCcccHHHHHHHhhC--CCEEEEEECChHHHHHhhh----cC----cEecC--HH-HHH-----hhCCE
Confidence            35688999999988 55555555554  4799999999965544433    34    33332  22 112     34798


Q ss_pred             EEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          185 IFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       185 v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ++.......-.-.+-.+.||+|.++.-.+.
T Consensus        82 ~vtaTG~~~vi~~e~~~~mkdgail~n~Gh  111 (162)
T PF00670_consen   82 FVTATGNKDVITGEHFRQMKDGAILANAGH  111 (162)
T ss_dssp             EEE-SSSSSSB-HHHHHHS-TTEEEEESSS
T ss_pred             EEECCCCccccCHHHHHHhcCCeEEeccCc
Confidence            776665544334566778888887774443

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK05867 short chain dehydrogenase; Provisional

Probab=91.73  E-value=1.5  Score=34.73  Aligned_cols=79  Identities=15%  Similarity=0.111  Sum_probs=47.5

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC------CCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFS  179 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~------~~~  179 (237)
                      .+.++|..|+++ +++..++..+ ....+|+.++.+++.++...+.+...+  .++.....|+.+.. ...      ...
T Consensus         8 ~~k~vlVtGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T PRK05867          8 HGKRALITGAST-GIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL   84 (253)
T ss_pred             CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            467899998754 4444444333 224689999998887776666555443  33667778876511 100      001


Q ss_pred             CCCCEEEEeC
Q 026506          180 GLADSIFLDL  189 (237)
Q Consensus       180 ~~~D~v~~~~  189 (237)
                      +..|.++.+.
T Consensus        85 g~id~lv~~a   94 (253)
T PRK05867         85 GGIDIAVCNA   94 (253)
T ss_pred             CCCCEEEECC
Confidence            4689988754

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=91.72  E-value=0.93  Score=36.48  Aligned_cols=75  Identities=21%  Similarity=0.283  Sum_probs=46.3

Q ss_pred             CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCCh--hchHHHHHhcccCCCE
Q 026506          131 APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP--WLAIPSAKKMLKQDGI  208 (237)
Q Consensus       131 ~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~--~~~l~~~~~~L~~gG~  208 (237)
                      ++..+|+++|.++..++.|++    .|+...   ...+.  ..+     ..+|+|++..|-.  .++++++...+++|+.
T Consensus         9 g~~~~v~g~d~~~~~~~~a~~----~g~~~~---~~~~~--~~~-----~~~DlvvlavP~~~~~~~l~~~~~~~~~~~i   74 (258)
T PF02153_consen    9 GPDVEVYGYDRDPETLEAALE----LGIIDE---ASTDI--EAV-----EDADLVVLAVPVSAIEDVLEEIAPYLKPGAI   74 (258)
T ss_dssp             TTTSEEEEE-SSHHHHHHHHH----TTSSSE---EESHH--HHG-----GCCSEEEE-S-HHHHHHHHHHHHCGS-TTSE
T ss_pred             CCCeEEEEEeCCHHHHHHHHH----CCCeee---ccCCH--hHh-----cCCCEEEEcCCHHHHHHHHHHhhhhcCCCcE
Confidence            556899999999999888876    465431   11211  112     3479999988743  3578888889999998


Q ss_pred             EEEEeCCHHHH
Q 026506          209 LCSFSPCIEQV  219 (237)
Q Consensus       209 l~~~~~~~~~~  219 (237)
                      +.=++......
T Consensus        75 v~Dv~SvK~~~   85 (258)
T PF02153_consen   75 VTDVGSVKAPI   85 (258)
T ss_dssp             EEE--S-CHHH
T ss_pred             EEEeCCCCHHH
Confidence            88666554443

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=91.67  E-value=1.5  Score=36.28  Aligned_cols=104  Identities=14%  Similarity=0.081  Sum_probs=54.7

Q ss_pred             CCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc-----CCCCCCCCCCCC
Q 026506          109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ-----GQGFPDEFSGLA  182 (237)
Q Consensus       109 ~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~-----~~~~~~~~~~~~  182 (237)
                      ..+|+.+|+|. |......+...  ...|+.+..++  .+..++    .++.  +....++..     ....++ ....+
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~--g~~V~~~~r~~--~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~~~-~~~~~   73 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARA--GFDVHFLLRSD--YEAVRE----NGLQ--VDSVHGDFHLPPVQAYRSAE-DMPPC   73 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeCC--HHHHHh----CCeE--EEeCCCCeeecCceEEcchh-hcCCC
Confidence            36899999998 65544444443  25677676654  222222    2311  111011100     000111 11569


Q ss_pred             CEEEEeCCCh--hchHHHHHhcccCCCEEEEEeCCHHHHHHHH
Q 026506          183 DSIFLDLPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSC  223 (237)
Q Consensus       183 D~v~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~  223 (237)
                      |+|++..+..  .++++.+...+++++.++.........+.+.
T Consensus        74 D~vilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~  116 (313)
T PRK06249         74 DWVLVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLR  116 (313)
T ss_pred             CEEEEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHH
Confidence            9999876533  3567788888899998776644334333343

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=91.60  E-value=0.41  Score=36.17  Aligned_cols=104  Identities=20%  Similarity=0.165  Sum_probs=62.5

Q ss_pred             CCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       107 ~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      -.|.+|..+|+|. |.-....++.+  ..+|+++|.+....+....    .+    +..  .++.+ .+     ...|+|
T Consensus        34 l~g~tvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~~~~~~~----~~----~~~--~~l~e-ll-----~~aDiv   95 (178)
T PF02826_consen   34 LRGKTVGIIGYGRIGRAVARRLKAF--GMRVIGYDRSPKPEEGADE----FG----VEY--VSLDE-LL-----AQADIV   95 (178)
T ss_dssp             STTSEEEEESTSHHHHHHHHHHHHT--T-EEEEEESSCHHHHHHHH----TT----EEE--SSHHH-HH-----HH-SEE
T ss_pred             cCCCEEEEEEEcCCcCeEeeeeecC--CceeEEecccCChhhhccc----cc----cee--eehhh-hc-----chhhhh
Confidence            4588999999998 66666667766  3699999998775552221    22    222  23321 12     348999


Q ss_pred             EEeCCChh----chHHHHHhcccCCCEEEEEeCCH-HHHHHHHHHHHh
Q 026506          186 FLDLPQPW----LAIPSAKKMLKQDGILCSFSPCI-EQVQRSCESLRL  228 (237)
Q Consensus       186 ~~~~~~~~----~~l~~~~~~L~~gG~l~~~~~~~-~~~~~~~~~l~~  228 (237)
                      ++..|...    -+=++.+..||+|.+++-.+-.. -.-+.+.+.|++
T Consensus        96 ~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~  143 (178)
T PF02826_consen   96 SLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALES  143 (178)
T ss_dssp             EE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred             hhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhh
Confidence            98877433    23456688999998887433111 123556777776

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=91.59  E-value=1.5  Score=34.51  Aligned_cols=70  Identities=11%  Similarity=0.025  Sum_probs=41.7

Q ss_pred             CCCEEEEEccCccHHH-HHHHHHhCCCcEEEEE--eCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          108 PGCLVLESGTGSGSLT-TSLARAVAPTGHVYTF--DFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~-~~~~~~~~~~~~v~~v--D~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      .+.+||.+|.|.-..- +..+...  +++|+++  +++++..+.+..        ..+.+...++....+     ..+++
T Consensus        24 ~~~~VLVVGGG~VA~RK~~~Ll~~--gA~VtVVap~i~~el~~l~~~--------~~i~~~~r~~~~~dl-----~g~~L   88 (223)
T PRK05562         24 NKIKVLIIGGGKAAFIKGKTFLKK--GCYVYILSKKFSKEFLDLKKY--------GNLKLIKGNYDKEFI-----KDKHL   88 (223)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCCCHHHHHHHhC--------CCEEEEeCCCChHHh-----CCCcE
Confidence            4789999999984433 2222223  3455555  777776654432        237777766653222     45888


Q ss_pred             EEEeCCCh
Q 026506          185 IFLDLPQP  192 (237)
Q Consensus       185 v~~~~~~~  192 (237)
                      |+....++
T Consensus        89 ViaATdD~   96 (223)
T PRK05562         89 IVIATDDE   96 (223)
T ss_pred             EEECCCCH
Confidence            88766544

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=91.56  E-value=1.2  Score=35.63  Aligned_cols=81  Identities=17%  Similarity=0.199  Sum_probs=45.3

Q ss_pred             CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCC-------------------HHHHHHHHHHHHHcCCCCcEEEEEc
Q 026506          108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFH-------------------EQRAASAREDFERTGVSSFVTVGVR  167 (237)
Q Consensus       108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~-------------------~~~~~~a~~~~~~~~~~~~i~~~~~  167 (237)
                      ...+|+.+|+|. |......+... +-++++.+|.+                   ....+.+++++...+-.-.++....
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~-Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~  109 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAA-GVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINA  109 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEec
Confidence            357999999987 66655555554 34688888742                   2345566666665543323444444


Q ss_pred             cccCCCCCCCCCCCCCEEEEeCC
Q 026506          168 DIQGQGFPDEFSGLADSIFLDLP  190 (237)
Q Consensus       168 d~~~~~~~~~~~~~~D~v~~~~~  190 (237)
                      .+....... .-..+|+|+....
T Consensus       110 ~i~~~~~~~-~~~~~DiVi~~~D  131 (245)
T PRK05690        110 RLDDDELAA-LIAGHDLVLDCTD  131 (245)
T ss_pred             cCCHHHHHH-HHhcCCEEEecCC
Confidence            332211111 1146999876544

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=91.54  E-value=6.2  Score=32.77  Aligned_cols=39  Identities=21%  Similarity=0.180  Sum_probs=26.9

Q ss_pred             CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHH
Q 026506          108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRA  146 (237)
Q Consensus       108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~  146 (237)
                      +..+|..+|+|. |....+.+...+-...+..+|++++..
T Consensus         2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~   41 (312)
T cd05293           2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKL   41 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHH
Confidence            456899999988 555544444434446899999987644

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	237
3mb5_A	255	Crystal Structure Of P. Abyssi Trna M1a58 Methyltra		5e-19
3lhd_C	253	Crystal Structure Of P. Abyssi Trna M1a58 Methyltra		5e-19
1o54_A	277	Crystal Structure Of Sam-Dependent O-Methyltransfer		3e-17
1i9g_A	280	Crystal Structure Of An Adomet Dependent Methyltran		1e-10
2pwy_A	258	Crystal Structure Of A M1a58 Trna Methyltransferase		2e-06
2b25_A	336	Human Putative Trna(1-Methyladenosine)methyltransfe		1e-05
2yvl_A	248	Crystal Structure Of Trna (m1a58) Methyltransferase		1e-04

>pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58 Methyltransferase In Complex With S-Adenosyl-L-Methionine Length = 255

Iteration: 1
 Score = 91.3 bits (225), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 95/212 (44%), Gaps = 5/212 (2%)
Query: 16  IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLA 75
           I+EGD V++ +       + V +   F    G  K  + IG+ FG  + S+KG    +L 
Sbjct: 2   IREGDKVVLVDPRGKRYLITVSKRD-FHTDLGILKLEEIIGRNFGEAIKSHKGHEFKILR 60
Query: 76  PTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGH 135
           P    +   +    QI++  D + ++ Y  + PG  +              A  V P G 
Sbjct: 61  PRIVDYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGR 120
Query: 136 VYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLA 195
           V +++  E  A  A E+ +  G    VT+ ++DI  +G  +E     D + LDLPQP   
Sbjct: 121 VVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIY-EGIEEEN---VDHVILDLPQPERV 176
Query: 196 IPSAKKMLKQDGILCSFSPCIEQVQRSCESLR 227
           +  A K LK  G   +++PC  QV R  E LR
Sbjct: 177 VEHAAKALKPGGFFVAYTPCSNQVMRLHEKLR 208

>pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58 Methyltransferase In Complex With S-Adenosyl-L-Homocysteine Length = 253

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 95/212 (44%), Gaps = 5/212 (2%)
Query: 16  IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLA 75
           I+EGD V++ +       + V +   F    G  K  + IG+ FG  + S+KG    +L 
Sbjct: 2   IREGDKVVLVDPRGKRYLITVSKRD-FHTDLGILKLEEIIGRNFGEAIKSHKGHEFKILR 60
Query: 76  PTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGH 135
           P    +   +    QI++  D + ++ Y  + PG  +              A  V P G 
Sbjct: 61  PRIVDYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGR 120
Query: 136 VYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLA 195
           V +++  E  A  A E+ +  G    VT+ ++DI  +G  +E     D + LDLPQP   
Sbjct: 121 VVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIY-EGIEEEN---VDHVILDLPQPERV 176
Query: 196 IPSAKKMLKQDGILCSFSPCIEQVQRSCESLR 227
           +  A K LK  G   +++PC  QV R  E LR
Sbjct: 177 VEHAAKALKPGGFFVAYTPCSNQVMRLHEKLR 208

>pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase (Tm0748) From Thermotoga Maritima At 1.65 A Resolution Length = 277

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 99/213 (46%), Gaps = 4/213 (1%)
Query: 15  CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLL 74
            +K GD V++    +    V + ++       G    ++   K  G ++ ++ G   Y+L
Sbjct: 19  TLKPGDRVLLSFEDESEFLVDLEKDKKLHTHLGIIDLNEVFEKGPGEIIRTSAGKKGYIL 78
Query: 75  APTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTG 134
            P+     + +  RTQI+Y  D SF+ M L++  G  +              ARAV  +G
Sbjct: 79  IPSLIDEIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSG 138
Query: 135 HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWL 194
            V+ ++  E+ A  A  +  + G+   VT+ VRDI  +GF ++     D++FLD+P PW 
Sbjct: 139 KVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS-EGFDEKD---VDALFLDVPDPWN 194
Query: 195 AIPSAKKMLKQDGILCSFSPCIEQVQRSCESLR 227
            I    + LK  G   +  P   QVQ + + L+
Sbjct: 195 YIDKCWEALKGGGRFATVCPTTNQVQETLKKLQ 227

>pdb|1I9G|A Chain A, Crystal Structure Of An Adomet Dependent Methyltransferase Length = 280

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 82/201 (40%), Gaps = 15/201 (7%)
Query: 34  VKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILY 93
           + +   + F    G+  H   IG   GS+V S+ G    +L P    + + +    Q++Y
Sbjct: 25  MSLTPGAEFHTHRGSIAHDAVIGLEQGSVVKSSNGALFLVLRPLLVDYVMSMPRGPQVIY 84
Query: 94  IADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDF 153
             D + ++   ++ PG  V               RAV P G V ++   EQRA  A  + 
Sbjct: 85  PKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISY---EQRADHA--EH 139
Query: 154 ERTGVSSFV-------TVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD 206
            R  VS           + V D+     PD   G  D   LD+  PW  + +  ++L   
Sbjct: 140 ARRNVSGCYGQPPDNWRLVVSDLADSELPD---GSVDRAVLDMLAPWEVLDAVSRLLVAG 196
Query: 207 GILCSFSPCIEQVQRSCESLR 227
           G+L  +   + Q+ R  E+LR
Sbjct: 197 GVLMVYVATVTQLSRIVEALR 217

>pdb|2PWY|A Chain A, Crystal Structure Of A M1a58 Trna Methyltransferase Length = 258

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 74/184 (40%), Gaps = 7/184 (3%)
Query: 38  QNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADI 97
           +   F +  G+  H   +    G +V ++ G  + +  PT E + L +       Y  D 
Sbjct: 26  EGGVFHHHKGSVPHEALLEAGPGGVVRTHLGEELSVHRPTLEEYLLHMKRSATPTYPKDA 85
Query: 98  SFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
           S ++  L+L PG  V              ARAV   G V +++      A A  +     
Sbjct: 86  SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERN----- 140
Query: 158 VSSFVTV-GVRDIQGQGFPDEFSGLA-DSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215
           V +F  V  VR   G+    E    A D + LDL +PW  +  A   LK D  L ++ P 
Sbjct: 141 VRAFWQVENVRFHLGKLEEAELEEAAYDGVALDLMEPWKVLEKAALALKPDRFLVAYLPN 200
Query: 216 IEQV 219
           I QV
Sbjct: 201 ITQV 204

>pdb|2B25|A Chain A, Human Putative Trna(1-Methyladenosine)methyltransferase Length = 336

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 82/202 (40%), Gaps = 20/202 (9%)
Query: 44  NRFGAFKHSDWIGKPFGSMVFSNKG-------GFVYLLA-PTPELWTLVLSHRTQILYIA 95
           N FG   +S+W   PFG +V    G       G  Y+L  P  E + +++   T I +  
Sbjct: 34  NNFGLL-NSNWGAVPFGKIVGKFPGQILRSSFGKQYMLRRPALEDYVVLMKRGTAITFPK 92
Query: 96  DISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFER 155
           DI+ ++  +++ PG  V              ++AV   G V +F+  +     A+++++ 
Sbjct: 93  DINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKH 152
Query: 156 TGVS----------SFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQ 205
              S            V    +DI G    D  S   D++ LD+  P + +P     LK 
Sbjct: 153 WRDSWKLSHVEEWPDNVDFIHKDISG-ATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKH 211
Query: 206 DGILCSFSPCIEQVQRSCESLR 227
            G+   +   I QV    + +R
Sbjct: 212 GGVCAVYVVNITQVIELLDGIR 233

>pdb|2YVL|A Chain A, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi From Aquifex Aeolicus Length = 248

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 87/219 (39%), Gaps = 14/219 (6%)
Query: 15  CIKEGDLVIVYERHDCMKAV-KVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYL 73
             KEG+ V++  R    K + K+    +   +    K  + IGKP G  +     GF   
Sbjct: 3   SFKEGEYVLI--RFGEKKFLRKLLPKQSLSVKKSVLKFDEVIGKPEGVKI----NGFEVY 56
Query: 74  LAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPT 133
                E+  L    +TQI+Y  D  ++ + L L     V              +      
Sbjct: 57  RPTLEEIILLGFERKTQIIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV---A 113
Query: 134 GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPW 193
           G V+TF+  E+   +A+++ ++  +   V     D +    P+   G+  + F+D+ +PW
Sbjct: 114 GEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPE---GIFHAAFVDVREPW 170
Query: 194 LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTG 232
             +    K L +   +    P   QV +  ES+  N+ G
Sbjct: 171 HYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIE-NYFG 208

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	237
2b25_A	336	Hypothetical protein; structural genomics, methyl	3e-71
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	1e-70
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	1e-70
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	8e-69
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	4e-67
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	3e-65
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	6e-64
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	9e-14
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	4e-12
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	1e-11
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	1e-11
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	3e-11
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	3e-11
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	7e-10
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	1e-09
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	1e-09
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	4e-09
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	5e-09
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	7e-09
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	8e-09
3ocj_A	305	Putative exported protein; structural genomics, PS	9e-09
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	2e-08
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	2e-08
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	4e-08
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	6e-08
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	7e-08
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	8e-08
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	2e-07
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	2e-07
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	2e-07
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	3e-07
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	3e-07
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	3e-07
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	4e-07
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	4e-07
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	4e-07
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	5e-07
3f4k_A	257	Putative methyltransferase; structural genomics, P	7e-07
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	8e-07
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	9e-07
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	9e-07
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	9e-07
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	1e-06
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	1e-06
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	1e-06
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	1e-06
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	1e-06
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	1e-06
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	2e-06
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	3e-06
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	4e-06
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	4e-06
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	7e-06
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	7e-06
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	8e-06
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	8e-06
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	1e-05
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	2e-05
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	2e-05
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	3e-05
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	3e-05
3i9f_A	170	Putative type 11 methyltransferase; structural gen	5e-05
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	1e-04
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	2e-04
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	2e-04
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	3e-04
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	3e-04
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	3e-04
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	4e-04
1xxl_A	239	YCGJ protein; structural genomics, protein structu	4e-04
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	5e-04
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	6e-04
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	7e-04
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	7e-04
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	8e-04
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	8e-04

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336

 Score =  220 bits (560), Expect = 3e-71
 Identities = 52/232 (22%), Positives = 100/232 (43%), Gaps = 14/232 (6%)

Query: 11  SFTRCIKEGDLVIVYERHDCMKA---VKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNK 67
           S  R  + G+L++        K     ++       + +GA      +GK  G ++ S+ 
Sbjct: 5   SRERPFQAGELILAETGEGETKFKKLFRLNNFGLLNSNWGAVPFGKIVGKFPGQILRSSF 64

Query: 68  GGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLA 127
           G    L  P  E + +++   T I +  DI+ ++  +++ PG  VLE+G+GSG ++  L+
Sbjct: 65  GKQYMLRRPALEDYVVLMKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLS 124

Query: 128 RAVAPTGHVYTFDFHEQRAASAREDFER----------TGVSSFVTVGVRDIQGQGFPDE 177
           +AV   G V +F+  +     A+++++                 V    +DI G     +
Sbjct: 125 KAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIK 184

Query: 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLN 229
            S   D++ LD+  P + +P     LK  G+   +   I QV    + +R  
Sbjct: 185 -SLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTC 235

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280

 Score =  216 bits (552), Expect = 1e-70
 Identities = 58/221 (26%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 11  SFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGF 70
           S T     G+ V + +       + +   + F    G+  H   IG   GS+V S+ G  
Sbjct: 2   SATGPFSIGERVQLTDAKGRRYTMSLTPGAEFHTHRGSIAHDAVIGLEQGSVVKSSNGAL 61

Query: 71  VYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAV 130
             +L P    + + +    Q++Y  D + ++   ++ PG  VLE+G GSG+LT SL RAV
Sbjct: 62  FLVLRPLLVDYVMSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAV 121

Query: 131 APTGHVYTFDFHEQRAASAREDFERT--GVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
            P G V +++     A  AR +             + V D+     PD      D   LD
Sbjct: 122 GPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGS---VDRAVLD 178

Query: 189 LPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLN 229
           +  PW  + +  ++L   G+L  +   + Q+ R  E+LR  
Sbjct: 179 MLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAK 219

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277

 Score =  216 bits (551), Expect = 1e-70
 Identities = 63/226 (27%), Positives = 108/226 (47%), Gaps = 5/226 (2%)

Query: 11  SFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGF 70
                +K GD V++    +    V + ++       G    ++   K  G ++ ++ G  
Sbjct: 15  KVADTLKPGDRVLLSFEDESEFLVDLEKDKKLHTHLGIIDLNEVFEKGPGEIIRTSAGKK 74

Query: 71  VYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAV 130
            Y+L P+     + +  RTQI+Y  D SF+ M L++  G  ++++G GSG++   LARAV
Sbjct: 75  GYILIPSLIDEIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAV 134

Query: 131 APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP 190
             +G V+ ++  E+ A  A  +  + G+   VT+ VRDI       +     D++FLD+P
Sbjct: 135 GSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDV----DALFLDVP 190

Query: 191 QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLR-LNFTGKES 235
            PW  I    + LK  G   +  P   QVQ + + L+ L F   E 
Sbjct: 191 DPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEV 236

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255

 Score =  211 bits (538), Expect = 8e-69
 Identities = 66/212 (31%), Positives = 102/212 (48%), Gaps = 5/212 (2%)

Query: 16  IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLA 75
           I+EGD V++ +       + V     F    G  K  + IG+ FG  + S+KG    +L 
Sbjct: 2   IREGDKVVLVDPRGKRYLITV-SKRDFHTDLGILKLEEIIGRNFGEAIKSHKGHEFKILR 60

Query: 76  PTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGH 135
           P    +   +    QI++  D + ++ Y  + PG  ++E+G GSG+LT  LA  V P G 
Sbjct: 61  PRIVDYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGR 120

Query: 136 VYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLA 195
           V +++  E  A  A E+ +  G    VT+ ++DI      +      D + LDLPQP   
Sbjct: 121 VVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENV----DHVILDLPQPERV 176

Query: 196 IPSAKKMLKQDGILCSFSPCIEQVQRSCESLR 227
           +  A K LK  G   +++PC  QV R  E LR
Sbjct: 177 VEHAAKALKPGGFFVAYTPCSNQVMRLHEKLR 208

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275

 Score =  207 bits (528), Expect = 4e-67
 Identities = 43/212 (20%), Positives = 79/212 (37%), Gaps = 7/212 (3%)

Query: 16  IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLA 75
           +K    VI+    +  K  +   ++      G   H                G    +  
Sbjct: 21  MKRSSPVILVSEDEYGKFDE---STNSILVKGKMHHLGISRVIEPGDELIVSGKSFIVSD 77

Query: 76  PTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGH 135
            +P  +  V+   TQI+   D S++IM   L PG  +LE G GSG++++ +  A+   G 
Sbjct: 78  FSPMYFGRVIRRNTQIISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGT 137

Query: 136 VYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLA 195
           +   +  E     A ++         V     DI        +    D++  D+P PW  
Sbjct: 138 LTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMY----DAVIADIPDPWNH 193

Query: 196 IPSAKKMLKQDGILCSFSPCIEQVQRSCESLR 227
           +     M+K   +   + P  +Q +++  SL 
Sbjct: 194 VQKIASMMKPGSVATFYLPNFDQSEKTVLSLS 225

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} Length = 248

 Score =  202 bits (514), Expect = 3e-65
 Identities = 54/220 (24%), Positives = 92/220 (41%), Gaps = 11/220 (5%)

Query: 16  IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLA 75
            KEG+ V++          K+    +   +    K  + IGKP G  +      F     
Sbjct: 4   FKEGEYVLIRFGEK-KFLRKLLPKQSLSVKKSVLKFDEVIGKPEGVKING----FEVYRP 58

Query: 76  PTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGH 135
              E+  L    +TQI+Y  D  ++ + L L     VLE GTGSG+L   L+      G 
Sbjct: 59  TLEEIILLGFERKTQIIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVA---GE 115

Query: 136 VYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLA 195
           V+TF+  E+   +A+++ ++  +   V     D +    P+   G+  + F+D+ +PW  
Sbjct: 116 VWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPE---GIFHAAFVDVREPWHY 172

Query: 196 IPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGKES 235
           +    K L +   +    P   QV +  ES+   F   E 
Sbjct: 173 LEKVHKSLMEGAPVGFLLPTANQVIKLLESIENYFGNLEV 212

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} Length = 258

 Score =  198 bits (505), Expect = 6e-64
 Identities = 55/216 (25%), Positives = 89/216 (41%), Gaps = 4/216 (1%)

Query: 14  RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYL 73
                G  +++ +R      V   +   F +  G+  H   +    G +V ++ G  + +
Sbjct: 3   HMAWPGP-LLLKDRKGRAYLVFPKEGGVFHHHKGSVPHEALLEAGPGGVVRTHLGEELSV 61

Query: 74  LAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPT 133
             PT E + L +       Y  D S ++  L+L PG  VLE+GTGSG LT  LARAV   
Sbjct: 62  HRPTLEEYLLHMKRSATPTYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEK 121

Query: 134 GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPW 193
           G V +++      A A  +         V   +  ++     +      D + LDL +PW
Sbjct: 122 GLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAA---YDGVALDLMEPW 178

Query: 194 LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLN 229
             +  A   LK D  L ++ P I QV     +   +
Sbjct: 179 KVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAH 214

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 66.9 bits (163), Expect = 9e-14
 Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 12/122 (9%)

Query: 101 IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS 160
            + + +  G  V+++  G+G+ T  LA  V   G V+ FD  ++  A+  +      +  
Sbjct: 15  YIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLID 74

Query: 161 FVTVGVRDIQGQGFPDEFSGLADSIFLDL------------PQPWLAIPSAKKMLKQDGI 208
            VT+     Q      +    A    L                   A+  A ++L   GI
Sbjct: 75  RVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGI 134

Query: 209 LC 210
           + 
Sbjct: 135 IT 136

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204

 Score = 62.2 bits (151), Expect = 4e-12
 Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 10/112 (8%)

Query: 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS 159
            +  L    G L+ + G GSGS++          G   T +    R  + +++ +  G+S
Sbjct: 47  TLAALAPRRGELLWDIGGGSGSVSVEWCL---AGGRAITIEPRADRIENIQKNIDTYGLS 103

Query: 160 SFVTVGVRDIQGQGFPDEFSGL--ADSIFLDLPQPWLAIPSAKKMLKQDGIL 209
             +      +QG   P   + L   +++F+             + L     +
Sbjct: 104 PRMRA----VQGT-APAALADLPLPEAVFIGGGGSQALYDRLWEWLAPGTRI 150

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} Length = 215

 Score = 61.0 bits (149), Expect = 1e-11
 Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 21/114 (18%)

Query: 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163
           L+L PG  VLE GTG G      A  V   G V + +   + A  A     + G  + V 
Sbjct: 73  LDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDN-VI 131

Query: 164 VGVRDIQG-QGFPDE--FSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGIL 209
           V V D  G  G+     +    D I+       +P+P +      + LK  G L
Sbjct: 132 VIVGD--GTLGYEPLAPY----DRIYTTAAGPKIPEPLI------RQLKDGGKL 173

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Length = 317

 Score = 62.1 bits (151), Expect = 1e-11
 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 21/114 (18%)

Query: 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163
           + L  G  VLE G G+G     ++R V   G V + ++  +    A+ + ER G+ + V 
Sbjct: 71  VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VI 129

Query: 164 VGVRDIQG-QGFPDE--FSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGIL 209
               D  G  G P+   +    D IF+     ++P+ W         LK+ G +
Sbjct: 130 FVCGD--GYYGVPEFSPY----DVIFVTVGVDEVPETWFT------QLKEGGRV 171

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178

 Score = 59.4 bits (144), Expect = 3e-11
 Identities = 28/115 (24%), Positives = 40/115 (34%), Gaps = 11/115 (9%)

Query: 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS 159
            I  L   P   + + G GSGS+     R+  P      F+  E+R      +    GVS
Sbjct: 17  AISALAPKPHETLWDIGGGSGSIAIEWLRS-TPQTTAVCFEISEERRERILSNAINLGVS 75

Query: 160 SFVTVGVRDIQGQGFPDEFSGL---ADSIFLDLPQPWLAI-PSAKKMLKQDGILC 210
                    +Q  G P  F  +    D IF+        +  +A K L   G L 
Sbjct: 76  -----DRIAVQQ-GAPRAFDDVPDNPDVIFIGGGLTAPGVFAAAWKRLPVGGRLV 124

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 60.7 bits (147), Expect = 3e-11
 Identities = 20/117 (17%), Positives = 33/117 (28%), Gaps = 11/117 (9%)

Query: 103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFV 162
             ++     +++ G G G L   L   +         D  E   A ARE F         
Sbjct: 17  VWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYD--S 74

Query: 163 TVGVRDIQGQGFPDEFSGLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSP 214
                D       D++    D          +  P   +      +K+ G +  F P
Sbjct: 75  EFLEGDATEIELNDKY----DIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEP 127

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* Length = 226

 Score = 56.4 bits (137), Expect = 7e-10
 Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 20/115 (17%)

Query: 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164
           +L  G   L+ G+GSG LT   AR V  TG V   D  ++    +  +  +   +   + 
Sbjct: 74  QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSG 133

Query: 165 GVRDIQG---QGFPDE--FSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGIL 209
            V+ + G    G+ +E  +    D+I +      +PQ  +        LK  G L
Sbjct: 134 RVQLVVGDGRMGYAEEAPY----DAIHVGAAAPVVPQALI------DQLKPGGRL 178

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 21/115 (18%), Positives = 44/115 (38%), Gaps = 14/115 (12%)

Query: 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS 159
           ++   E     + ++ G G+G +T  LA        VY  D + +  ++   + +R G+ 
Sbjct: 25  IMCLAEPGKNDVAVDVGCGTGGVTLELAG---RVRRVYAIDRNPEAISTTEMNLQRHGLG 81

Query: 160 SFVTVGVRDIQGQGFPDEFSGL--ADSIFL---DLPQPWLAIPSAKKMLKQDGIL 209
             VT+    ++G   P+    +   D   +         + +   K  LK  G +
Sbjct: 82  DNVTL----MEGD-APEALCKIPDIDIAVVGGSGGELQEI-LRIIKDKLKPGGRI 130

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233

 Score = 55.5 bits (133), Expect = 1e-09
 Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 6/119 (5%)

Query: 95  ADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE 154
           A +   ++ L +  G  +L  G  SG+  + ++  + P G +Y  +F  +     R+   
Sbjct: 64  AALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPR---VMRDLLT 120

Query: 155 RTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP---WLAIPSAKKMLKQDGILC 210
                  +   + D +            D ++ D+ QP    + + +A+  L+  G + 
Sbjct: 121 VVRDRRNIFPILGDARFPEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYML 179

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 54.5 bits (131), Expect = 4e-09
 Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 98  SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
             +       PG  VLE+G G G+ T  LA+   P   + + D   +    ARE+ E+ G
Sbjct: 27  KLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTEKNG 85

Query: 158 VSSFVTVGVRDIQGQGFPDE-FSG-LADSIFLDLPQPWLAIPSAKKMLKQDGILC 210
           + + V     +I    F D  F       +   L  P  A+ S KK+LK  G + 
Sbjct: 86  IKN-VKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTIT 139

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 53.9 bits (130), Expect = 5e-09
 Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 9/115 (7%)

Query: 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS 159
           V+    L  G  VL+ GTG+G     L++ V   G VY  D  E+    A E   + G+ 
Sbjct: 29  VLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK 88

Query: 160 SFVTVGVRDIQGQGFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGIL 209
           +   +   +      PD      D IF+     +L +P   +   K++ K    L
Sbjct: 89  NVEVL-KSEENKIPLPDNT---VDFIFMAFTFHELSEPLKFLEELKRVAKPFAYL 139

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204

 Score = 53.0 bits (127), Expect = 7e-09
 Identities = 20/115 (17%), Positives = 45/115 (39%), Gaps = 11/115 (9%)

Query: 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS 159
            +  L L    ++ + G GS S++   +    P G ++  + + Q     R++ ++    
Sbjct: 32  TLSKLRLQDDLVMWDIGAGSASVSIEASNL-MPNGRIFALERNPQYLGFIRDNLKKFVAR 90

Query: 160 SFVTVGVRDIQGQGFPDEFSGLA--DSIFLDLPQPWLA--IPSAKKMLKQDGILC 210
                 V  ++    P+    L   D +F+      L   I +  + LK +G++ 
Sbjct: 91  -----NVTLVEAF-APEGLDDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIV 139

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183

 Score = 52.6 bits (127), Expect = 8e-09
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 10/89 (11%)

Query: 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS 159
            I  L L    +V++ G GSG +T  +A+       VY  D+ +      +++  +  + 
Sbjct: 27  SIGKLNLNKDDVVVDVGCGSGGMTVEIAKRC---KFVYAIDYLDGAIEVTKQNLAKFNIK 83

Query: 160 SFVTVGVRDIQGQGFPDEFSGL-ADSIFL 187
                  + I+G+   D    L  +  F+
Sbjct: 84  -----NCQIIKGR-AEDVLDKLEFNKAFI 106

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 53.5 bits (128), Expect = 9e-09
 Identities = 18/110 (16%), Positives = 36/110 (32%), Gaps = 4/110 (3%)

Query: 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164
            L PGC+V     G  S   +L  +  P   +   D+  +    A        ++  +T+
Sbjct: 115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITL 174

Query: 165 GVRDIQGQGFPDEF---SGLADSIFLDLPQPWLAI-PSAKKMLKQDGILC 210
             +D       + +   +    +I+         +     + LK  G L 
Sbjct: 175 HRQDAWKLDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALV 224

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Length = 235

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 23/114 (20%)

Query: 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163
             L PG  +LE GTGSG     ++  V     VYT +   +    A+ + ER GV + V 
Sbjct: 87  ANLKPGMNILEVGTGSGWNAALISEIVKT--DVYTIERIPELVEFAKRNLERAGVKN-VH 143

Query: 164 VGVRDIQG-QGFPDE--FSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGIL 209
           V + D  G +GFP +  +    D I +      +P+P +      + LK  G L
Sbjct: 144 VILGD--GSKGFPPKAPY----DVIIVTAGAPKIPEPLI------EQLKIGGKL 185

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} Length = 227

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 20/119 (16%)

Query: 105 ELVPGCLVLESGTGSGSLTTSLARAVA----PTGHVYTFDFHEQRAASAREDFERTGVSS 160
            L PG   ++ G+GSG LT  +A  +        +V   +  +     + E+ +R     
Sbjct: 77  VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPEL 136

Query: 161 FVTVGVRDIQGQGFPDEFSGLA-----DSIFL-----DLPQPWLAIPSAKKMLKQDGIL 209
                 + I    +             D+I +     +LP+  +       +L ++G L
Sbjct: 137 LKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASELPEILV------DLLAENGKL 189

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Length = 210

 Score = 51.0 bits (123), Expect = 4e-08
 Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 24/114 (21%)

Query: 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163
           LEL P   VLE GTGSG  T  LA  V    HV + +  +     AR   +   + + V+
Sbjct: 73  LELTPQSRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKNLDLHN-VS 128

Query: 164 VGVRDIQG-QGFPDE--FSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGIL 209
               D  G QG+     F    D+I +     ++P   +        L + GIL
Sbjct: 129 TRHGD--GWQGWQARAPF----DAIIVTAAPPEIPTALM------TQLDEGGIL 170

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 51.0 bits (122), Expect = 6e-08
 Identities = 26/113 (23%), Positives = 41/113 (36%), Gaps = 17/113 (15%)

Query: 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164
            L    L+ + G G+G  T  LA  V   G V   DF          +  ++G+ + VT 
Sbjct: 43  NLTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTG 100

Query: 165 GVRDIQGQGFPDE-FSGLADSI-------FLDLPQPWLAIPSAKKMLKQDGIL 209
            V  +    F +E      D I        +   +    +   +K LK+ G L
Sbjct: 101 IVGSMDDLPFRNEEL----DLIWSEGAIYNIGFER---GLNEWRKYLKKGGYL 146

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A Length = 227

 Score = 50.4 bits (120), Expect = 7e-08
 Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 8/118 (6%)

Query: 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163
             + PG  VL  G  SG+  + ++  V   G ++  +F  +     RE          + 
Sbjct: 69  FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPR---VLRELVPIVEERRNIV 125

Query: 164 VGVRDIQGQGFPDEFSGLADSIFLDLPQPWLA---IPSAKKMLKQDG--ILCSFSPCI 216
             + D              D IF D+ QP  A   I +A+  LK+ G  ++   S  I
Sbjct: 126 PILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSI 183

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Length = 223

 Score = 50.3 bits (121), Expect = 8e-08
 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 10/83 (12%)

Query: 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG 171
           +LE GT  G  T  LAR ++  G V T +  E+ A  AR + ER  ++  V V      G
Sbjct: 62  ILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEV----RTG 117

Query: 172 ------QGFPDEFSGLADSIFLD 188
                 Q   +E     D IF+D
Sbjct: 118 LALDSLQQIENEKYEPFDFIFID 140

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 50.0 bits (119), Expect = 2e-07
 Identities = 24/106 (22%), Positives = 35/106 (33%), Gaps = 10/106 (9%)

Query: 87  HRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRA 146
              Q    A    +    ++ PG  +LE G G G L+  LA  V  +GHV   D      
Sbjct: 22  RTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDY 81

Query: 147 AS------AREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186
            +      A        +   +TV           D+   +AD  F
Sbjct: 82  GAPLTLGQAWNHLLAGPLGDRLTV----HFNTNLSDDLGPIADQHF 123

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} Length = 456

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 41/155 (26%), Positives = 55/155 (35%), Gaps = 36/155 (23%)

Query: 93  YIADIS--FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAR 150
           Y  + S   V       PG  VL+     G  +T LA  +   G + T +   +RA    
Sbjct: 88  YSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILS 147

Query: 151 EDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP--------------QPW--- 193
           E+ ER GVS+   V             FSG  D I +D P              + W   
Sbjct: 148 ENIERWGVSN-AIVTNHA--PAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEE 204

Query: 194 ----LA------IPSAKKMLKQDGIL----CSFSP 214
                       + SA KMLK  G L    C+F+P
Sbjct: 205 SPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAP 239

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 49.7 bits (118), Expect = 2e-07
 Identities = 23/126 (18%), Positives = 42/126 (33%), Gaps = 15/126 (11%)

Query: 99  FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV 158
             +     + G  VL+ G G+G      ++ V   G V   D  + +   AR+  E    
Sbjct: 74  STLPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAE 133

Query: 159 SSFVTVG---VRDIQGQ----------GFPDEF--SGLADSIFLDLPQPWLAIPSAKKML 203
             F +     VR ++G           G PD      +++ +               ++L
Sbjct: 134 KFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVL 193

Query: 204 KQDGIL 209
           +  G L
Sbjct: 194 RDGGEL 199

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 Length = 231

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 26/114 (22%)

Query: 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163
           L+L  G  VLE GTG G  T  +A  V     V + + +E+    A +          + 
Sbjct: 66  LDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYN---NIK 119

Query: 164 VGVRDIQG-QGFPDE--FSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGIL 209
           + + D  G  G+ +E  +    D + +      L           + LK+ GI+
Sbjct: 120 LILGD--GTLGYEEEKPY----DRVVVWATAPTLLCKPY------EQLKEGGIM 161

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 Length = 227

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 25/119 (21%)

Query: 106 LVPGCLVLESGTGSGSLTTSLARAVAPTG-----HVYTFDFHEQRAASAREDFERTGVSS 160
           L PG  +L+ G+GSG LT    R +   G      +   +   +    ++ +      S 
Sbjct: 82  LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSM 141

Query: 161 FVTVGVRDIQG---QGFPDE--FSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGIL 209
             +  +  ++G   +G+P    +    ++I +     D P   +        L   G L
Sbjct: 142 LDSGQLLIVEGDGRKGYPPNAPY----NAIHVGAAAPDTPTELI------NQLASGGRL 190

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210

 Score = 48.3 bits (116), Expect = 3e-07
 Identities = 13/53 (24%), Positives = 20/53 (37%)

Query: 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164
           V+  G G G  +   ARA++ +  V   D        AR      G+   V +
Sbjct: 60  VVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVEL 112

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* Length = 464

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 39/181 (21%), Positives = 61/181 (33%), Gaps = 40/181 (22%)

Query: 67  KGGFVYLLAPTPELWTLVLSHRTQILYIADIS--FVIMYLELVPGCLVLESGTGSGSLTT 124
           + GF Y     P            + YI + S   V + L+  PG  VL+     G  TT
Sbjct: 61  QEGFYYPEEARP---GPHPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTT 117

Query: 125 SLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184
            LA  +   G +   +   +R     E+ ER G    VT        +   + F      
Sbjct: 118 HLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQA----PPRALAEAFGTYFHR 173

Query: 185 IFLDLP--------------QPW-------LA------IPSAKKMLKQDGIL----CSFS 213
           + LD P              + W       +A      +  A ++L   G+L    C+F+
Sbjct: 174 VLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFA 233

Query: 214 P 214
           P
Sbjct: 234 P 234

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Length = 221

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 15/110 (13%)

Query: 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV----- 166
           VLE G   G     +AR + P   + T + +   AA  ++     G+   VT+       
Sbjct: 62  VLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQD 121

Query: 167 --RDIQGQGFPDEFSGLADSIFLD----LPQPWLAIPSAKKMLKQDGILC 210
               ++ +   D      D +FLD       P   +     +L++  +L 
Sbjct: 122 LIPQLKKKYDVDTL----DMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLL 167

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 Length = 315

 Score = 48.7 bits (117), Expect = 4e-07
 Identities = 36/155 (23%), Positives = 53/155 (34%), Gaps = 37/155 (23%)

Query: 93  YIADIS--FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAR 150
           YI + S  +  + L+  PG +V +     G  T+ LA+ +   G +Y FD  E R    R
Sbjct: 101 YIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETR 160

Query: 151 EDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP--------------QPW--- 193
            +  R GV + V +            E +   D I LD P                    
Sbjct: 161 LNLSRLGVLN-VILFHSS--SLHIG-ELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMD 216

Query: 194 ----LA------IPSAKKMLKQDGIL----CSFSP 214
                       +    ++LK  GIL    CS  P
Sbjct: 217 DIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP 251

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 4/81 (4%)

Query: 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD--- 168
            +E G  +G    + A A+   G +   D +++         ++ GV   +         
Sbjct: 83  TMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALP 142

Query: 169 -IQGQGFPDEFSGLADSIFLD 188
            +      ++  G  D IF+D
Sbjct: 143 VLDEMIKDEKNHGSYDFIFVD 163

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 47.9 bits (114), Expect = 7e-07
 Identities = 23/123 (18%), Positives = 38/123 (30%), Gaps = 17/123 (13%)

Query: 95  ADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE 154
           A    V    EL     + + G G+G  T  LA  V   G +   D          E+  
Sbjct: 33  ATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAV 90

Query: 155 RTGVSSFVTVGVRDIQGQGFPDE-FSGLADSIF-------LDLPQPWLAIPSAKKMLKQD 206
           +   +  V      +    F +E      D I+       +   +    +    K LK+ 
Sbjct: 91  KANCADRVKGITGSMDNLPFQNEEL----DLIWSEGAIYNIGFER---GMNEWSKYLKKG 143

Query: 207 GIL 209
           G +
Sbjct: 144 GFI 146

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Length = 248

 Score = 47.7 bits (114), Expect = 8e-07
 Identities = 18/53 (33%), Positives = 26/53 (49%)

Query: 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164
           +LE GT  G  T  +AR +   G + T +     A  ARE+ +  GV   VT+
Sbjct: 67  ILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTL 119

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Length = 239

 Score = 47.3 bits (113), Expect = 9e-07
 Identities = 12/53 (22%), Positives = 26/53 (49%)

Query: 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164
           ++E GT +G  +   A A+   G +   D  E+    AR+ ++  G+ + + +
Sbjct: 64  IIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFL 116

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} Length = 479

 Score = 48.2 bits (115), Expect = 9e-07
 Identities = 28/126 (22%), Positives = 45/126 (35%), Gaps = 34/126 (26%)

Query: 120 GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179
           GS TT ++  +   G +   +F   R      +  R G+S+ V +   D  G+ F     
Sbjct: 129 GSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISN-VALTHFD--GRVFGAAVP 185

Query: 180 GLADSIFLDLP--------------QPW-------LA------IPSAKKMLKQDGIL--- 209
            + D+I LD P              + W       +A      I SA   L+  G L   
Sbjct: 186 EMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYS 245

Query: 210 -CSFSP 214
            C+ + 
Sbjct: 246 TCTLNQ 251

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232

 Score = 47.3 bits (113), Expect = 9e-07
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 11/84 (13%)

Query: 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD--- 168
           VLE G   G    ++A  + P G +   D      A A++ +++ GV+  +++ +     
Sbjct: 76  VLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALA 135

Query: 169 ----IQGQGFPDEFSGLADSIFLD 188
               +       EF    D IF+D
Sbjct: 136 TLEQLTQGKPLPEF----DLIFID 155

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 7/49 (14%), Positives = 15/49 (30%)

Query: 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS 160
            +     +G +   +   +A    +   D   +    A+  F   G S 
Sbjct: 60  AIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSP 108

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 4/81 (4%)

Query: 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD--- 168
            +E G  +G      A ++   G +   DF  +          + GV   +     D   
Sbjct: 74  TIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAML 133

Query: 169 -IQGQGFPDEFSGLADSIFLD 188
            +       E  G  D  F+D
Sbjct: 134 ALDNLLQGQESEGSYDFGFVD 154

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 15/53 (28%), Positives = 29/53 (54%)

Query: 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164
           V++ GT +G    ++  A+   G + T D  E+  A A+E +E+ G+S  + +
Sbjct: 68  VIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGL 120

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} Length = 233

 Score = 47.0 bits (111), Expect = 1e-06
 Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 8/112 (7%)

Query: 103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE-RTGVSSF 161
            + + PG  VL  G  SG+  + ++  V P G VY  +F  +         + RT +   
Sbjct: 72  QIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPV 131

Query: 162 VTVGVRDIQGQGFPDEFSGLADSIFLDLPQP---WLAIPSAKKMLKQDGILC 210
           +     D +          + D IF D+ QP    +   +A   L+  G   
Sbjct: 132 IE----DARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFV 179

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} PDB: 3id5_B* 3pla_E* Length = 232

 Score = 47.0 bits (111), Expect = 1e-06
 Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 16/123 (13%)

Query: 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE-RTGVSSFV 162
             +  G  VL  G  SG+  + ++  +   G  Y  +F  +         + R  +    
Sbjct: 72  NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNI---- 127

Query: 163 TVGVRDIQGQGFPDEFSGL---ADSIFLDLPQPWLA---IPSAKKMLKQDG--ILCSFSP 214
                 +    FP  +  +    D +++D+ QP      I +AK  LK +G  +L   + 
Sbjct: 128 ---FPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIKAR 184

Query: 215 CIE 217
            I+
Sbjct: 185 SID 187

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A Length = 274

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 31/155 (20%), Positives = 48/155 (30%), Gaps = 37/155 (23%)

Query: 93  YIADIS--FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAR 150
               IS     + L       +L+     G  TT LA+ +   G +   +  + R  + +
Sbjct: 66  MPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALK 125

Query: 151 EDFERTGVSSFVTVGVRDIQGQGFPDEF---SGLADSIFLDLP----------------- 190
            +  R GV +   +   D   + + D         D I LD P                 
Sbjct: 126 SNINRMGVLN-TIIINAD--MRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEED 182

Query: 191 -------QPWLAIPSAKKMLKQDGIL----CSFSP 214
                  Q  L I     +LK+DG L    CS   
Sbjct: 183 IKYCSLRQKEL-IDIGIDLLKKDGELVYSTCSMEV 216

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Length = 242

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 11/84 (13%)

Query: 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD--- 168
           VLE GT +G    +++ A+   G V T D +E     A   +        + + +     
Sbjct: 64  VLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALD 123

Query: 169 ----IQGQGFPDEFSGLADSIFLD 188
               +  +G   +F    D IF+D
Sbjct: 124 TLHSLLNEGGEHQF----DFIFID 143

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 Length = 309

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 33/156 (21%), Positives = 53/156 (33%), Gaps = 14/156 (8%)

Query: 48  AFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPEL-WTLVLSHRTQI----------LYIAD 96
            FK   +  +   S +   +          P +   LV   +T +          L + D
Sbjct: 29  YFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQD 88

Query: 97  IS--FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE 154
            +     M L+  PG  V+++    G+ T+ LA  +   G ++ FD   +R AS      
Sbjct: 89  RASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLA 148

Query: 155 RTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP 190
           R GVS    +   D       D        I LD  
Sbjct: 149 RAGVSC-CELAEEDFLAVSPSDPRYHEVHYILLDPS 183

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 19/118 (16%)

Query: 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS 159
           ++  +       VLE G G+G+LT  L  A      VY  +   +    A+E   +    
Sbjct: 37  ILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGR---TVYGIEPSREMRMIAKEKLPKE--- 90

Query: 160 SFVTVGVRDIQGQGFPDEFSGLADSIF-------LDLPQPWLAIPSAKKMLKQDGILC 210
              ++   D      P       D+I        L   +  +AI    ++L + G + 
Sbjct: 91  --FSITEGDFLSFEVPTSI----DTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIV 142

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Length = 229

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 3/80 (3%)

Query: 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV---RD 168
            L+ GT +G    +LA A+   G V T +   Q     R  + +      + + +    +
Sbjct: 73  ALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALE 132

Query: 169 IQGQGFPDEFSGLADSIFLD 188
              +      +G  D   +D
Sbjct: 133 TLDELLAAGEAGTFDVAVVD 152

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Length = 233

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164
           +LE GT  G     +A+A+ P   + + +  E+R   A +  +  G+ S + +
Sbjct: 58  ILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALGLESRIEL 109

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 45.2 bits (106), Expect = 7e-06
 Identities = 17/120 (14%), Positives = 32/120 (26%), Gaps = 9/120 (7%)

Query: 93  YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASARED 152
           Y+  +           G   +  G G   LT  L  +      V   +     A  +R+ 
Sbjct: 107 YLELLKNEAALGRFRRGERAVFIGGGPLPLTGILL-SHVYGMRVNVVEIEPDIAELSRKV 165

Query: 153 FERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDL--PQPWLAIPSAKKMLKQDGILC 210
            E  GV   V V   D       +      D + +            +  + +  +  + 
Sbjct: 166 IEGLGVDG-VNVITGDETVIDGLE-----FDVLMVAALAEPKRRVFRNIHRYVDTETRII 219

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 44.1 bits (104), Expect = 8e-06
 Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 14/116 (12%)

Query: 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS--SFVT 163
           L    +V+++  G+G+ T  LA     +  VY FD  EQ      +     G+     + 
Sbjct: 20  LDDESIVVDATMGNGNDTAFLAG---LSKKVYAFDVQEQALGKTSQRLSDLGIENTELIL 76

Query: 164 VGVRDI--------QGQGFPDEFSGLADSIFLDLPQP-WLAIPSAKKMLKQDGILC 210
            G  ++        +   F   +   AD   +  P     AI      L+  G L 
Sbjct: 77  DGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLA 132

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225

 Score = 44.4 bits (104), Expect = 8e-06
 Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 22/116 (18%)

Query: 111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQR----AASAREDFERTGVS--SFVTV 164
           + ++ GTG G     LA            D  ++     +    +   + G+S   FV  
Sbjct: 27  VHIDLGTGDGRNIYKLAIND-QNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIA 85

Query: 165 GVRDIQGQGFPDEFSGLADSIFLDLPQP----WLAIPSA------KKMLKQDGILC 210
               +     P E   +ADSI +  P      ++  P+         + K++    
Sbjct: 86  AAESL-----PFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFE 136

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Length = 230

 Score = 44.3 bits (104), Expect = 1e-05
 Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 7/119 (5%)

Query: 95  ADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE 154
           A I   +  + +     +L  G  +G+  + +A  +A  G VY  ++  +     RE  +
Sbjct: 61  AAIIKGLKVMPIKRDSKILYLGASAGTTPSHVAD-IADKGIVYAIEYAPR---IMRELLD 116

Query: 155 RTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP---WLAIPSAKKMLKQDGILC 210
                  +   + D              D I+ D+ QP    + I +AK  LK+ G   
Sbjct: 117 ACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGM 175

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 24/114 (21%), Positives = 38/114 (33%), Gaps = 9/114 (7%)

Query: 99  FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGH-VYTFDFHEQRAASAREDFERTG 157
           F++     +P   +L    G G     LA      G+ V   D      A A++  +  G
Sbjct: 20  FLVSVANQIPQGKILCLAEGEGRNACFLASL----GYEVTAVDQSSVGLAKAKQLAQEKG 75

Query: 158 VSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWL--AIPSAKKMLKQDGIL 209
           V   +T    ++       +      SIF  LP        P   + LK  G+ 
Sbjct: 76  VK--ITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVF 127

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 8/111 (7%)

Query: 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS----SFVT 163
              L+++ G G G+ T  +A+ + P   +   D       +A    E +  +    SF  
Sbjct: 36  ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKI 95

Query: 164 VGVRDIQGQGFPDEFSGLADSIFLDLPQPWL----AIPSAKKMLKQDGILC 210
               D +  G         D I       W        SA   L++DG + 
Sbjct: 96  SSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIA 146

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} Length = 450

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 35/193 (18%), Positives = 64/193 (33%), Gaps = 50/193 (25%)

Query: 76  PTPEL-WTLVLSHRTQI----------LYIADIS--FVIMYLELVPGCLVLESGTGSGSL 122
            +  +   L +                + + + +     + L+  PG  V++     G  
Sbjct: 214 RSERVPTILKIKGPYNFDTSSAFNEGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGK 273

Query: 123 TTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG-L 181
           TT LA  +   G +Y FD  + R    ++  +R G+   V   V+D   +  P+     +
Sbjct: 274 TTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKI-VKPLVKD--ARKAPEIIGEEV 330

Query: 182 ADSIFLDLP---------QP---WLAIP---------------SAKKMLKQDGIL----C 210
           AD + LD P          P   W                   SA +++K  G L    C
Sbjct: 331 ADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTC 390

Query: 211 SFSPC--IEQVQR 221
           S       + ++ 
Sbjct: 391 SIFKEENEKNIRW 403

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 9/107 (8%)

Query: 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG 165
           +     VL+ G G G  T  L+R           D  E      +E  E   + SF+  G
Sbjct: 51  VKKEAEVLDVGCGDGYGTYKLSRTGY---KAVGVDISEVMIQKGKERGEGPDL-SFI-KG 105

Query: 166 VRDIQGQGFPDE-FSG-LADSIFLDLPQPWLAIPSAKKMLKQDGILC 210
             D+    F +E F   +A +      +P  A+   K++LK DG  C
Sbjct: 106 --DLSSLPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYAC 150

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 20/123 (16%)

Query: 92  LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASARE 151
           + +      +  +      ++++ G G+G     L         +Y  D +       +E
Sbjct: 1   MSLERPEEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKE 57

Query: 152 DFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQD 206
            F+           +     +  PD      D I       D+      I   K++LK D
Sbjct: 58  KFDSV---------ITLSDPKEIPDNS---VDFILFANSFHDMDDKQHVISEVKRILKDD 105

Query: 207 GIL 209
           G +
Sbjct: 106 GRV 108

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163
           L + PG  +L+ G+GSG +  + AR           D      A A+   E  GVS  V 
Sbjct: 32  LRMKPGTRILDLGSGSGEMLCTWAR--DHGITGTGIDMSSLFTAQAKRRAEELGVSERVH 89

Query: 164 VGVRDIQGQGFPDEF 178
               D  G    ++ 
Sbjct: 90  FIHNDAAGYVANEKC 104

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 3/79 (3%)

Query: 99  FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV 158
            +I    +  G   ++ G+G G+L+ +LA+       +   DF +     A ++     +
Sbjct: 35  NIINRFGITAG-TCIDIGSGPGALSIALAKQSD--FSIRALDFSKHMNEIALKNIADANL 91

Query: 159 SSFVTVGVRDIQGQGFPDE 177
           +  + +   D+      D 
Sbjct: 92  NDRIQIVQGDVHNIPIEDN 110

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Length = 232

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164
           +LE GT  G  +   A +++   HV T + +E     A+++       + V +
Sbjct: 75  ILEIGTAIGYSSMQFA-SISDDIHVTTIERNETMIQYAKQNLATYHFENQVRI 126

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 16/111 (14%), Positives = 38/111 (34%), Gaps = 16/111 (14%)

Query: 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR 167
           P   +++   G+G+ T  L++       V   D  +     A ++     +S      + 
Sbjct: 56  PELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTAANIS----YRLL 108

Query: 168 DIQGQGFPDEF-SGLADSI--------FLDLPQPWLAIPSAKKMLKQDGIL 209
           D        +  S + D+          + + +  L   S + +L + G +
Sbjct: 109 DGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAM 159

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 13/125 (10%)

Query: 91  ILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAR 150
           + Y   +++V+  +E  PG  + + G G+G+ T  LA     TG     D  E+    A+
Sbjct: 18  VPYPEWVAWVLEQVE--PGKRIADIGCGTGTATLLLADHYEVTG----VDLSEEMLEIAQ 71

Query: 151 EDFERTGVSSFVTVGVRDIQGQGFPDEFSG---LADSI--FLDLPQPWLAIPSAKKMLKQ 205
           E    T     V   V+D++    P+       L DS+              SA ++L  
Sbjct: 72  EKAMETNRH--VDFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTD 129

Query: 206 DGILC 210
            G L 
Sbjct: 130 GGKLL 134

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 20/115 (17%), Positives = 43/115 (37%), Gaps = 7/115 (6%)

Query: 98  SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
           S V+  +++V     L+ G G+G  +  LA        V  +D +    A+         
Sbjct: 22  SEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGY---DVDAWDKNAMSIANVERIKSIEN 78

Query: 158 VSSFVTVGVRDIQGQGFPDEFSGLADSI---FLDLPQPWLAIPSAKKMLKQDGIL 209
           + + +   V D+    F  ++  +  ++   FL+       I + ++  K  G  
Sbjct: 79  LDN-LHTRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYN 132

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 39.6 bits (92), Expect = 4e-04
 Identities = 19/109 (17%), Positives = 26/109 (23%), Gaps = 11/109 (10%)

Query: 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG 165
           L P   VLE+G G G          A       +DF  +    AR        +      
Sbjct: 46  LTPQTRVLEAGCGHGPDAARFGPQAA---RWAAYDFSPELLKLAR---ANAPHADVYEWN 99

Query: 166 VRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214
            +       P         I      P   I    ++   D       P
Sbjct: 100 GKG----ELPAGLGAPFGLIV-SRRGPTSVILRLPELAAPDAHFLYVGP 143

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 25/121 (20%), Positives = 40/121 (33%), Gaps = 14/121 (11%)

Query: 95  ADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE 154
             +  +I   E      VL+ G G+G    + +  V         D  ++    A    +
Sbjct: 8   HSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQ 64

Query: 155 RTGVSSFVTVGVRDIQGQGFPDE-FSGLADSIFLD-----LPQPWLAIPSAKKMLKQDGI 208
             GV + V       +   FPD+ F    D I              A+    ++LKQDG 
Sbjct: 65  EKGVEN-VRFQQGTAESLPFPDDSF----DIITCRYAAHHFSDVRKAVREVARVLKQDGR 119

Query: 209 L 209
            
Sbjct: 120 F 120

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 14/112 (12%)

Query: 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163
           L  V G  +++ G G G          A   +V   D  E+  A AR     TG+ ++  
Sbjct: 39  LPEVGGLRIVDLGCGFGWFCRWAHEHGA--SYVLGLDLSEKMLARARAAGPDTGI-TYE- 94

Query: 164 VGVRDIQGQGFPDE-----FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILC 210
               D+     P +     +S LA      +        +  + L   G   
Sbjct: 95  --RADLDKLHLPQDSFDLAYSSLA---LHYVEDVARLFRTVHQALSPGGHFV 141

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 32/153 (20%), Positives = 51/153 (33%), Gaps = 14/153 (9%)

Query: 93  YIADISFVIMYLE---LVPGCLVLESGTGSGSLTTSLARAVAPTGH-VYTFDFHEQRAAS 148
             A+I FV    +         VL+   G+G  T  LA      G+ V   D HE+    
Sbjct: 23  VKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER----GYEVVGLDLHEEMLRV 78

Query: 149 AREDFERTGVSSFVTVGVRDIQGQGFPDEFSG---LADSI-FLDLPQPWLAIPSAKKMLK 204
           AR   +   +   +     D+    F +EF        +I + D            + LK
Sbjct: 79  ARRKAKERNLK--IEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALK 136

Query: 205 QDGILCSFSPCIEQVQRSCESLRLNFTGKESCI 237
             G+  +  PC     R    +     G+E  +
Sbjct: 137 PGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLV 169

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225

 Score = 38.7 bits (90), Expect = 7e-04
 Identities = 17/110 (15%), Positives = 29/110 (26%), Gaps = 11/110 (10%)

Query: 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR 167
            G ++L+ G+    L   L             +  E    SA ++ E  G+   + V   
Sbjct: 15  QGAILLDVGSDHAYLPIELVER-GQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQV--- 70

Query: 168 DIQGQGF-PDEFSGLADSIF---LDLPQPWLAIPSAKKMLKQDG--ILCS 211
                G    E +     I    +        +      L      IL  
Sbjct: 71  -RLANGLAAFEETDQVSVITIAGMGGRLIARILEEGLGKLANVERLILQP 119

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 38.8 bits (90), Expect = 7e-04
 Identities = 22/116 (18%), Positives = 48/116 (41%), Gaps = 10/116 (8%)

Query: 98  SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGH-VYTFDFHEQRAASAREDFERT 156
             V+   +++  C VL+ G G G  +  L+      G+ V ++D +E   A   E  E+ 
Sbjct: 110 GDVVDAAKIISPCKVLDLGCGQGRNSLYLSLL----GYDVTSWDHNENSIAFLNETKEKE 165

Query: 157 GVSSFVTVGVRDIQGQGFPDEFSGLADSI---FLDLPQPWLAIPSAKKMLKQDGIL 209
            ++  ++  + DI      + +  +  ++   FL+  +    I + K+     G  
Sbjct: 166 NLN--ISTALYDINAANIQENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYN 219

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 16/120 (13%), Positives = 33/120 (27%), Gaps = 16/120 (13%)

Query: 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS 159
           ++  + L       + G G G+ T  L         +   D  +     A +        
Sbjct: 25  LLAQVPLERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADRLPN---- 79

Query: 160 SFVTVGVRDIQGQGFPDEFSGLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSP 214
                G  D+       +     D ++ +     +P     +      L+  G+L    P
Sbjct: 80  --TNFGKADLATWKPAQKA----DLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMP 133

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 16/114 (14%)

Query: 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS 159
           ++  L   PG  +L+ G G+G LT  +A++ A    V   D        AR+++      
Sbjct: 49  LLQLLNPQPGEFILDLGCGTGQLTEKIAQSGA---EVLGTDNAATMIEKARQNYPH---- 101

Query: 160 SFVTVGVRDIQGQGFPDEF----SGLADSIFLDLPQPWLAIPSAKKMLKQDGIL 209
             +   V D +            S         + +P  AI S  + LK  G  
Sbjct: 102 --LHFDVADARNFRVDKPLDAVFSNAM---LHWVKEPEAAIASIHQALKSGGRF 150

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	237
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	100.0
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	100.0
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.98
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.97
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.97
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.97
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.9
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.79
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.78
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.78
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.75
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.75
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.72
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.72
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.71
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.71
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.7
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.7
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.69
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.69
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.68
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.68
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.68
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.67
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.67
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.67
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.67
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.66
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.66
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.66
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.66
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.66
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.65
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.65
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.65
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.64
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.64
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.64
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.64
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.64
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.64
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.64
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.63
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.63
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.63
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.63
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.63
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.62
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.62
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.62
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.62
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.62
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.62
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.61
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.61
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.61
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.61
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.61
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.61
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.61
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.61
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.61
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.61
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.61
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.6
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.6
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.6
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.6
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.59
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.59
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.59
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.58
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.58
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.58
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.58
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.58
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.58
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.57
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.57
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.57
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.57
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.57
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.57
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.56
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.56
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.56
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.56
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.56
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.56
3ocj_A	305	Putative exported protein; structural genomics, PS	99.56
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.56
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.56
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.56
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.55
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.55
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.55
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.55
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.55
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.55
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.54
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.54
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.54
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.54
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.54
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.54
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.54
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.53
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.53
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.53
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.53
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.53
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.53
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.53
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.53
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.52
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.52
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.51
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.51
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.51
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.51
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.51
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.51
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.5
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.5
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.5
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.5
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.5
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.5
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.5
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.5
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.5
2o07_A	304	Spermidine synthase; structural genomics, structur	99.5
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.5
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.5
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.5
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.5
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.5
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.49
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.49
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.49
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.49
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.49
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.49
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.49
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.49
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.49
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.48
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.48
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.48
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.48
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.47
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.47
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.47
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.47
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.47
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.47
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.47
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.47
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.47
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.47
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.47
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.46
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.46
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.46
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.46
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.46
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.46
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.45
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.45
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.45
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.45
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.44
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.44
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.43
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.43
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.43
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.43
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.43
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.43
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.43
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.43
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.43
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.43
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.43
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.42
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.42
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	99.42
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.42
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.42
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.42
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.42
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.41
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.41
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.4
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.4
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.4
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	99.4
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.4
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.4
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.4
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	99.4
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.39
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.39
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.39
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.38
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.38
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.38
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	99.38
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	99.37
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.37
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.37
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.37
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	99.37
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.36
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.36
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.36
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.36
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	99.36
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.36
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.36
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.36
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.35
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.35
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	99.35
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.35
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.34
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	99.34
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.34
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.33
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.33
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	99.33
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.33
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.33
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.33
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.32
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.32
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	99.32
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	99.31
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.31
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	99.31
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.31
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	99.31
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.31
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.31
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	99.3
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.3
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.29
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.29
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	99.29
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	99.28
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.28
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	99.28
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	99.28
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	99.27
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.27
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.27
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	99.27
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	99.26
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.26
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.26
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	99.25
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.25
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.25
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.25
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.25
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	99.24
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.23
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.23
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	99.22
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	99.2
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.19
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.19
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.18
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.18
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.18
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	99.18
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.17
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.17
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.17
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.16
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	99.16
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	99.15
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.13
3lkd_A	542	Type I restriction-modification system methyltrans	99.13
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.12
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	99.11
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.11
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	99.11
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.1
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.1
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.1
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.1
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	99.08
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.08
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	99.07
3khk_A	544	Type I restriction-modification system methylation	99.06
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.06
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	99.05
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.04
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.02
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	99.01
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.01
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	98.98
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	98.97
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.96
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.95
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.93
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.93
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.91
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.91
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.89
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.88
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	98.86
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.84
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.82
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.81
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.8
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.79
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.78
3ufb_A	530	Type I restriction-modification system methyltran	98.78
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.77
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.74
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	98.72
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.72
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	98.68
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	98.67
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	98.57
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	98.57
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	98.56
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.53
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	98.51
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	98.46
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	98.46
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.44
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	98.44
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	98.43
4eye_A	342	Probable oxidoreductase; structural genomics, niai	98.41
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	98.35
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	98.33
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	98.31
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	98.3
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	98.29
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	98.29
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	98.25
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.23
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	98.13
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.09
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	98.06
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	98.06
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	97.98
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	97.93
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.92
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	97.9
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	97.89
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	97.88
3gms_A	340	Putative NADPH:quinone reductase; structural genom	97.86
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	97.85
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.8
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	97.78
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	97.74
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	97.71
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	97.71
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	97.71
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	97.68
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.67
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	97.64
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	97.64
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	97.63
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.56
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.55
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.42
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.27
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	97.22
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	97.17
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.02
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.94
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	96.85
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	96.84
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	96.79
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	96.75
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	96.6
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	96.57
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	96.55
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.52
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.47
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.42
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.17
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.14
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	96.13
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	96.09
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.99
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	95.93
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	95.92
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	95.92
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	95.81
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.76
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	95.6
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	95.5
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.5
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	95.44
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	95.43
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	95.15
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	95.14
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	95.11
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	95.03
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	94.99
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	94.99
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	94.99
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	94.94
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	94.92
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	94.63
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	94.62
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	94.59
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	94.48
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	94.47
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	94.19
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	94.17
2hwk_A	320	Helicase NSP2; rossman fold, alpha/beta/alpha, mul	94.05
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	94.0
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	94.0
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	93.86
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	93.8
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	93.78
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	93.78
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	93.74
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	93.73
2zig_A	297	TTHA0409, putative modification methylase; methylt	93.57
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	93.54
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	93.51
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	93.5
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	93.48
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	93.48
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	93.45
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	93.45
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	93.41
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	93.36
3me5_A	482	Cytosine-specific methyltransferase; structural ge	93.35
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	93.31
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	93.3
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	93.3
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	93.2
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	93.19
1id1_A	153	Putative potassium channel protein; RCK domain, E.	93.17
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	93.15
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	93.15
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	93.14
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	93.07
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	93.07
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	93.06
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	92.98
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	92.94
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	92.93
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	92.87
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	92.84
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	92.7
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	92.65
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	92.6
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	92.59
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	92.56
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	92.4
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	92.39
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	92.37
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	92.36
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	92.36
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	92.32
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	92.31
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	92.31
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	92.14
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	92.06
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	91.92
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	91.81
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	91.6
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	91.58
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	91.57
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	91.57
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	91.48
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	91.43
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	91.38
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.37
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	91.37
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	91.36
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	91.35
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	91.35
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	91.34
4ezb_A	317	Uncharacterized conserved protein; structural geno	91.29
3trk_A	324	Nonstructural polyprotein; hydrolase; 2.40A {Chiku	91.28
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	91.25
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	91.14
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	91.13
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	90.98
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	90.93
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	90.83
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	90.83
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	90.82
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	90.73
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	90.69
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	90.69
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	90.65
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	90.62
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	90.61

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=100.00  E-value=1.2e-31  Score=214.16  Aligned_cols=216  Identities=31%  Similarity=0.523  Sum_probs=197.3

Q ss_pred             CCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEEEEECCCHHHHhhhcCCccccccc
Q 026506           15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYI   94 (237)
Q Consensus        15 ~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (237)
                      +||+||+|++....++++.+.+..| +++|+.|.+.+++++|+++|..+....|..++...|....+...+.+..+.+++
T Consensus         1 ~~~~Gd~v~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~ig~~~g~~i~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~   79 (255)
T 3mb5_A            1 MIREGDKVVLVDPRGKRYLITVSKR-DFHTDLGILKLEEIIGRNFGEAIKSHKGHEFKILRPRIVDYLDKMKRGPQIVHP   79 (255)
T ss_dssp             CCCTTCEEEEECTTSCEEEEECCSS-EEEETTEEEEGGGGTTCCTTCEEECTTCCEEEEECCCHHHHHHHSCCCSCCCCH
T ss_pred             CCCCCCEEEEEECCCcEEEEEecCC-eEecCCEEEEHHHhcCCCCCcEEEECCCcEEEEeCCCHHHHHhhCccccccccH
Confidence            5899999999999999998888887 999999999999999999999999988888888999977776688888888999


Q ss_pred             ccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCC
Q 026506           95 ADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF  174 (237)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~  174 (237)
                      .....++..+++.++.+|||+|||+|.++..++..+++..+++++|+++++++.|+++++..++.+++++..+|+.+ .+
T Consensus        80 ~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~  158 (255)
T 3mb5_A           80 KDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE-GI  158 (255)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG-CC
T ss_pred             hHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh-cc
Confidence            98888889999999999999999999999999998777789999999999999999999998987779999999984 45


Q ss_pred             CCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-c--Cccccc
Q 026506          175 PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-N--FTGKES  235 (237)
Q Consensus       175 ~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~--f~~v~~  235 (237)
                      +.   +.||+|+++.+.++.+++++.+.|+|||+++++.++.++..++.+.+++ +  |..+++
T Consensus       159 ~~---~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g~~f~~~~~  219 (255)
T 3mb5_A          159 EE---ENVDHVILDLPQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRT  219 (255)
T ss_dssp             CC---CSEEEEEECSSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTGGGBSCCEE
T ss_pred             CC---CCcCEEEECCCCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCccccEE
Confidence            54   6799999999999999999999999999999999999999999999999 7  987764

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=100.00  E-value=1.5e-30  Score=210.56  Aligned_cols=221  Identities=27%  Similarity=0.459  Sum_probs=197.8

Q ss_pred             cCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEEEEECCCHHHHhhhcCCcccc
Q 026506           12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQI   91 (237)
Q Consensus        12 ~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (237)
                      ++..||+||+|++...+++++.+.+..|..+++..|.+.+.+++|..+|..+....+..++...|....+...+.+..+.
T Consensus         3 ~~~~~~~Gd~v~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~ig~~~g~~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~   82 (280)
T 1i9g_A            3 ATGPFSIGERVQLTDAKGRRYTMSLTPGAEFHTHRGSIAHDAVIGLEQGSVVKSSNGALFLVLRPLLVDYVMSMPRGPQV   82 (280)
T ss_dssp             -CCSCCTTCEEEEEETTCCEEEEECCTTCEEEETTEEEEHHHHTTCCTTEEEECSSCCEEEEECCCHHHHHTTSCSCSCC
T ss_pred             CCCcCCCCCEEEEEECCCCEEEEEECCCCeEEcCCceEEHHHhcCCCCceEEEecCCcEEEEeCCCHHHHHhhcccccee
Confidence            45679999999999999999999999999999999999999999999999999888888889999999999888888888


Q ss_pred             cccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-C-CCCcEEEEEccc
Q 026506           92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-G-VSSFVTVGVRDI  169 (237)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~-~~~~i~~~~~d~  169 (237)
                      +++.....++..+++.++.+|||+|||+|.++..++..+++..+++++|+++.+++.|++++... + +..++++..+|+
T Consensus        83 ~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~  162 (280)
T 1i9g_A           83 IYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL  162 (280)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG
T ss_pred             ecHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECch
Confidence            99988888888999999999999999999999999998766789999999999999999999877 5 334499999999


Q ss_pred             cCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh--cCccccc
Q 026506          170 QGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL--NFTGKES  235 (237)
Q Consensus       170 ~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~--~f~~v~~  235 (237)
                      .+..++.   +.||+|+++.+.++.+++++.+.|+|||+++++.++.++..++.+.+++  +|..++.
T Consensus       163 ~~~~~~~---~~~D~v~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~~~~~  227 (280)
T 1i9g_A          163 ADSELPD---GSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPRA  227 (280)
T ss_dssp             GGCCCCT---TCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCCCEE
T ss_pred             HhcCCCC---CceeEEEECCcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcCCcEE
Confidence            8644443   6799999999999999999999999999999999999999999999887  5776543

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.98  E-value=1.1e-30  Score=211.21  Aligned_cols=222  Identities=28%  Similarity=0.456  Sum_probs=199.4

Q ss_pred             cccCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEEEEECCCHHHHhhhcCCcc
Q 026506           10 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRT   89 (237)
Q Consensus        10 ~~~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (237)
                      -++...+++||+|++...++++....++.|..++++.|.+++.+++|+.+|..+....+..++...|..+.+...+.+..
T Consensus        14 ~~~~~~~~~gd~v~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~g~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~   93 (277)
T 1o54_A           14 GKVADTLKPGDRVLLSFEDESEFLVDLEKDKKLHTHLGIIDLNEVFEKGPGEIIRTSAGKKGYILIPSLIDEIMNMKRRT   93 (277)
T ss_dssp             CCGGGCCCTTCEEEEEETTSCEEEEECCTTCEEEETTEEEEHHHHTTSCTTCEEECTTCCEEEEECCCHHHHHHTCCC-C
T ss_pred             ccccCCCCCCCEEEEEECCCcEEEEEEcCCCEEecCCceEEHHHhcCCCCCcEEEEcCCcEEEEeCCCHHHHHhhccccC
Confidence            46778999999999999999999999999999999999999999999999999988888777889999999988888888


Q ss_pred             cccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc
Q 026506           90 QILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI  169 (237)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~  169 (237)
                      +.+++.+...++..+++.++.+|||+|||+|.++..++..+++..+++++|+++.+++.|++++...++.+++++..+|+
T Consensus        94 ~~~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~  173 (277)
T 1o54_A           94 QIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI  173 (277)
T ss_dssp             CCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCG
T ss_pred             CccCHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCH
Confidence            88999988888999999999999999999999999999887667899999999999999999998888755699999998


Q ss_pred             cCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCccccc
Q 026506          170 QGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGKES  235 (237)
Q Consensus       170 ~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~~  235 (237)
                      .+. ++.   +.||+|+++++.++.+++.+.+.|+|||+++++.++..+..++.+.+++ +|..+++
T Consensus       174 ~~~-~~~---~~~D~V~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~  236 (277)
T 1o54_A          174 SEG-FDE---KDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEV  236 (277)
T ss_dssp             GGC-CSC---CSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEEE
T ss_pred             HHc-ccC---CccCEEEECCcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCceeEE
Confidence            753 443   6799999999999999999999999999999999999899999999998 7876654

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.97  E-value=4.9e-30  Score=204.95  Aligned_cols=218  Identities=26%  Similarity=0.346  Sum_probs=190.0

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEEEEECCCHHHHhhhcCCcccccc
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILY   93 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (237)
                      .++|+||+|++...++++....+..|.+++++.|.+.+++++|..+|..+....|..++...|....+.....+..+.++
T Consensus         2 ~~~~~Gd~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   81 (258)
T 2pwy_A            2 SHMAWPGPLLLKDRKGRAYLVFPKEGGVFHHHKGSVPHEALLEAGPGGVVRTHLGEELSVHRPTLEEYLLHMKRSATPTY   81 (258)
T ss_dssp             ------CCEEEECTTCCEEEECCCTTCEECCTTCCEEHHHHHHHCTTCEEECSTTCEEEEECCCHHHHHHHSCCSSCCCC
T ss_pred             CCCCCCCEEEEEECCCcEEEEEecCCCEEecCCceEEHHHhcCCCCCcEEEeCCCcEEEEeCCCHHHHhhcCcccccccc
Confidence            46899999999988888888788899999999999999999999999999888887778899999988888888888899


Q ss_pred             cccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEccccCC
Q 026506           94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-GVSSFVTVGVRDIQGQ  172 (237)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~  172 (237)
                      +.....++..+++.++.+|||+|||+|.++..++..+++..+++++|+++.+++.|++++... +.. ++++..+|+.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~-~v~~~~~d~~~~  160 (258)
T 2pwy_A           82 PKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVE-NVRFHLGKLEEA  160 (258)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCC-CEEEEESCGGGC
T ss_pred             chHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCC-CEEEEECchhhc
Confidence            988888888899999999999999999999999998766789999999999999999999877 744 499999999864


Q ss_pred             CCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCccccc
Q 026506          173 GFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGKES  235 (237)
Q Consensus       173 ~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~~  235 (237)
                      .++.   +.||+|+++.++++.+++++.+.|+|||+++++.++.++..++.+.+++ +|..+++
T Consensus       161 ~~~~---~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~  221 (258)
T 2pwy_A          161 ELEE---AAYDGVALDLMEPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFRLERV  221 (258)
T ss_dssp             CCCT---TCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEEEEEE
T ss_pred             CCCC---CCcCEEEECCcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCceEEE
Confidence            3544   6799999999999999999999999999999999999999999999988 7876553

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.97  E-value=2.6e-29  Score=199.59  Aligned_cols=208  Identities=26%  Similarity=0.369  Sum_probs=178.1

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEEEEECCCHHHHh-hhcCCccccc
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWT-LVLSHRTQIL   92 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   92 (237)
                      +.+++||||++.+.. |+++..+.||.|.+|+.|.+++|+++|..+|..+     ..++...|..+.+. ..+....+.+
T Consensus         2 ~~~~~Gd~V~~~~~~-~~~~~~~~~g~~~~~~~G~~~~~~~~g~~~G~~~-----~~~~~~~p~~~~~~~~~~~~~~~~~   75 (248)
T 2yvl_A            2 NSFKEGEYVLIRFGE-KKFLRKLLPKQSLSVKKSVLKFDEVIGKPEGVKI-----NGFEVYRPTLEEIILLGFERKTQII   75 (248)
T ss_dssp             CCCCTTCEEEEEETT-EEEEEECCTTCEEEETTEEEEGGGTTTCCTTEEE-----TTEEEECCCHHHHHHHTSCCSSCCC
T ss_pred             CcCCCCCEEEEEeCC-eEEEEEEcCCCEEecCCceEEHHHhcCCCCCCEE-----EEEEEeCCCHHHHHHhcCcCCCCcc
Confidence            369999999999988 9999999999999999999999999988888765     34456778777666 5556677788


Q ss_pred             ccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC
Q 026506           93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ  172 (237)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~  172 (237)
                      ++.....++..+++.++.+|||+|||+|.++..+++.   ..+++++|+++++++.|+++....++..++++...|+.+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  152 (248)
T 2yvl_A           76 YPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDA  152 (248)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTS
T ss_pred             cchhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhc
Confidence            8888888888899999999999999999999999887   4799999999999999999998888755699999998752


Q ss_pred             CCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHhcCccc
Q 026506          173 GFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGK  233 (237)
Q Consensus       173 ~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~v  233 (237)
                      ..+.   +.||+|+++.+.++.+++++.+.|+|||++++..++..+..++.+.+++.|.++
T Consensus       153 ~~~~---~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~~  210 (248)
T 2yvl_A          153 EVPE---GIFHAAFVDVREPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENYFGNL  210 (248)
T ss_dssp             CCCT---TCBSEEEECSSCGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTTEEEE
T ss_pred             ccCC---CcccEEEECCcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCcc
Confidence            2133   679999999999989999999999999999999999888888888876555444

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.97  E-value=2.7e-29  Score=208.35  Aligned_cols=216  Identities=24%  Similarity=0.381  Sum_probs=177.1

Q ss_pred             cccCCCCCCCCEEEEEEcCCc---EEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEEEEECCCHHHHhhhcC
Q 026506           10 ISFTRCIKEGDLVIVYERHDC---MKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLS   86 (237)
Q Consensus        10 ~~~~~~~~~Gd~V~i~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (237)
                      .+++++||+||+|++...++.   ++...+++|.+++|+.|.+.++++++..+|..+....|..++...|.++.+...++
T Consensus         4 ~~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ig~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~   83 (336)
T 2b25_A            4 TSRERPFQAGELILAETGEGETKFKKLFRLNNFGLLNSNWGAVPFGKIVGKFPGQILRSSFGKQYMLRRPALEDYVVLMK   83 (336)
T ss_dssp             ----CCCCTTCEEEEEC----CCCEEEEECCSSCBCC-----CBHHHHTTCCTTEEEECTTSCEEEEECCCHHHHHHHSC
T ss_pred             cccCCCCCCCCEEEEEeCCCCccceeeEEecCCCEEEcccCcEeHHHHcCCCCCceEEeCCCcEEEecCCCHHHHhhhhc
Confidence            456789999999999877664   56778999999999999999999999999999888878777778999999988888


Q ss_pred             CcccccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC---------
Q 026506           87 HRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG---------  157 (237)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---------  157 (237)
                      +..+..++.+...++..+.+.++.+|||+|||+|.++..++...++..+++++|+++.+++.|++++...+         
T Consensus        84 ~~~~~~~~~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~  163 (336)
T 2b25_A           84 RGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVE  163 (336)
T ss_dssp             CSSCCCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSS
T ss_pred             CCCcccCHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhccccccccc
Confidence            88888999988888888899999999999999999999999887666899999999999999999987532         


Q ss_pred             -CCCcEEEEEccccCC--CCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh
Q 026506          158 -VSSFVTVGVRDIQGQ--GFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL  228 (237)
Q Consensus       158 -~~~~i~~~~~d~~~~--~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~  228 (237)
                       ...++++..+|+.+.  .++.   +.||+|+++.+.++..++.+.+.|+|||+++++.++..+..++.+.+++
T Consensus       164 ~~~~~v~~~~~d~~~~~~~~~~---~~fD~V~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~  234 (336)
T 2b25_A          164 EWPDNVDFIHKDISGATEDIKS---LTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRT  234 (336)
T ss_dssp             CCCCCEEEEESCTTCCC----------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred             ccCCceEEEECChHHcccccCC---CCeeEEEECCCCHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence             223499999999753  2333   5799999999999989999999999999999999999999999998885

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.90  E-value=1.5e-22  Score=163.22  Aligned_cols=212  Identities=20%  Similarity=0.301  Sum_probs=151.5

Q ss_pred             CCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEEEEECCCHHHHhhhcCCcccccccc
Q 026506           16 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIA   95 (237)
Q Consensus        16 ~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (237)
                      ++-...|++...... .....+. .+.++..+.+...++.|+.+|..+. ..+..++...|....+.....+....+++.
T Consensus        21 ~~~~~~~i~~~~~~~-~~~~~r~-~~~~~~~~~~~~~~l~g~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (275)
T 1yb2_A           21 MKRSSPVILVSEDEY-GKFDEST-NSILVKGKMHHLGISRVIEPGDELI-VSGKSFIVSDFSPMYFGRVIRRNTQIISEI   97 (275)
T ss_dssp             -----CCEEECSSCC-EEEETTT-TEEEC-CCEEECC-CCCCCTTCEEE-ETTEEEEEECCCGGGHHHHC----------
T ss_pred             cccCceEEEEecCCC-Cceeccc-cceeccCCccchhheeCCCCCcEEE-ECCeEEEEeCCCHHHHHhhccccccccChh
Confidence            344445555443322 2222223 2456677777888899999988777 666666778888877777777777888888


Q ss_pred             cHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEccccCCCC
Q 026506           96 DISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-GVSSFVTVGVRDIQGQGF  174 (237)
Q Consensus        96 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~~  174 (237)
                      ....++..+.+.++.+|||+|||+|.++..+++.+.+..+++++|+++.+++.+++++... +..+ +++..+|+.+ .+
T Consensus        98 ~~~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~-v~~~~~d~~~-~~  175 (275)
T 1yb2_A           98 DASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGN-VRTSRSDIAD-FI  175 (275)
T ss_dssp             --------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTT-EEEECSCTTT-CC
T ss_pred             hHHHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCc-EEEEECchhc-cC
Confidence            8777888889999999999999999999999988656689999999999999999999877 7555 9999999974 44


Q ss_pred             CCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCccccc
Q 026506          175 PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGKES  235 (237)
Q Consensus       175 ~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~~  235 (237)
                      +.   +.||+|+++.+.++.+++++.+.|+|||++++..+...+.+++.+.+++ +|..+++
T Consensus       176 ~~---~~fD~Vi~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~~~~  234 (275)
T 1yb2_A          176 SD---QMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLET  234 (275)
T ss_dssp             CS---CCEEEEEECCSCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEEE
T ss_pred             cC---CCccEEEEcCcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEE
Confidence            43   6799999999999999999999999999999999999888899888888 7876554

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.79  E-value=8.5e-18  Score=129.35  Aligned_cols=136  Identities=16%  Similarity=0.240  Sum_probs=113.2

Q ss_pred             ccccH-HHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC
Q 026506           93 YIADI-SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG  171 (237)
Q Consensus        93 ~~~~~-~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~  171 (237)
                      .+..+ ..++..+.+.++.+|||+|||+|.++..++.. ++..+++++|+++.+++.+++++...+..+ +++..+|+.+
T Consensus        24 ~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~  101 (204)
T 3e05_A           24 TKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNL-MPNGRIFALERNPQYLGFIRDNLKKFVARN-VTLVEAFAPE  101 (204)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHH-CTTSEEEEEECCHHHHHHHHHHHHHHTCTT-EEEEECCTTT
T ss_pred             ChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeCChhh
Confidence            44444 34777888999999999999999999999988 456899999999999999999999888855 9999999864


Q ss_pred             CCCCCCCCCCCCEEEEeCC--ChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCcccc
Q 026506          172 QGFPDEFSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGKE  234 (237)
Q Consensus       172 ~~~~~~~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~  234 (237)
                      . ++..  +.||+|+++..  ....+++++.+.|+|||++++..+...+.+++.+.+++ +| +++
T Consensus       102 ~-~~~~--~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~-~~~  163 (204)
T 3e05_A          102 G-LDDL--PDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGY-MVE  163 (204)
T ss_dssp             T-CTTS--CCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTC-EEE
T ss_pred             h-hhcC--CCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCC-cee
Confidence            2 2221  57999998754  45678999999999999999998888888999999988 77 443

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.78  E-value=2.5e-18  Score=134.11  Aligned_cols=159  Identities=16%  Similarity=0.209  Sum_probs=116.3

Q ss_pred             CCCceEEeccCcEEEEECCCHHHHhhhcCCcccccccccHHHH---HHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCc
Q 026506           58 PFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFV---IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTG  134 (237)
Q Consensus        58 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~  134 (237)
                      -||+......+..|+.+.|.....               .+.+   +..+.++||++|||+|||+|.++.++++..++.+
T Consensus        39 vyge~~~~~~~~e~r~w~p~rskl---------------aa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G  103 (233)
T 4df3_A           39 VYGERIFRYNGEEYREWNAYRSKL---------------AAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRG  103 (233)
T ss_dssp             SSSCCEEEETTEEEEECCTTTCHH---------------HHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTC
T ss_pred             ccCceEEEcCCceeeeECCCchHH---------------HHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCc
Confidence            466666655666666666643211               1112   2346789999999999999999999999999999


Q ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCChh---chHHHHHhcccCCCEEEE
Q 026506          135 HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPW---LAIPSAKKMLKQDGILCS  211 (237)
Q Consensus       135 ~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~---~~l~~~~~~L~~gG~l~~  211 (237)
                      +|+++|+++++++.+++++...+  + +..+.+|...........+.+|+|+++.+.++   .++.++.+.|||||++++
T Consensus       104 ~V~avD~s~~~~~~l~~~a~~~~--n-i~~V~~d~~~p~~~~~~~~~vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI  180 (233)
T 4df3_A          104 RIYGVEFAPRVMRDLLTVVRDRR--N-IFPILGDARFPEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLM  180 (233)
T ss_dssp             EEEEEECCHHHHHHHHHHSTTCT--T-EEEEESCTTCGGGGTTTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             eEEEEeCCHHHHHHHHHhhHhhc--C-eeEEEEeccCccccccccceEEEEEEeccCChhHHHHHHHHHHhccCCCEEEE
Confidence            99999999999999998865433  4 88888887652211122267999999887665   478999999999999986


Q ss_pred             Ee---------CCHHHHHHHHHHHHh-cCcccc
Q 026506          212 FS---------PCIEQVQRSCESLRL-NFTGKE  234 (237)
Q Consensus       212 ~~---------~~~~~~~~~~~~l~~-~f~~v~  234 (237)
                      ..         +.....++..+.|++ ||.-++
T Consensus       181 ~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e  213 (233)
T 4df3_A          181 AIKARSIDVTTEPSEVYKREIKTLMDGGLEIKD  213 (233)
T ss_dssp             EEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEE
T ss_pred             EEecccCCCCCChHHHHHHHHHHHHHCCCEEEE
Confidence            52         223445677788888 887554

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.78  E-value=1.6e-17  Score=127.98  Aligned_cols=128  Identities=15%  Similarity=0.136  Sum_probs=108.2

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .++..+.+.++.+|||+|||+|.++..++..   ..+|+++|+++++++.|+++++.+++.+++++..+|+.+ .++.. 
T Consensus        46 ~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-~~~~~-  120 (204)
T 3njr_A           46 LTLAALAPRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPA-ALADL-  120 (204)
T ss_dssp             HHHHHHCCCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTG-GGTTS-
T ss_pred             HHHHhcCCCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhh-hcccC-
Confidence            4677888899999999999999999998887   478999999999999999999999987459999999875 22221 


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCcc
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTG  232 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~  232 (237)
                       ..||+|+++......+++.+.+.|+|||++++.....++..+..+.+++ +|.-
T Consensus       121 -~~~D~v~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i  174 (204)
T 3njr_A          121 -PLPEAVFIGGGGSQALYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQL  174 (204)
T ss_dssp             -CCCSEEEECSCCCHHHHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEE
T ss_pred             -CCCCEEEECCcccHHHHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcE
Confidence             5799999876533338999999999999999999989999999999988 6543

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.75  E-value=2.1e-17  Score=131.31  Aligned_cols=143  Identities=20%  Similarity=0.095  Sum_probs=113.6

Q ss_pred             CcccccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 026506           87 HRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV  166 (237)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~  166 (237)
                      ...+...+.....++..+.+.++.+|||+|||+|.++..++...  ..+++++|+++.+++.+++++...++.+++++..
T Consensus        15 ~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~   92 (256)
T 1nkv_A           15 RIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIH   92 (256)
T ss_dssp             SSSSSCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred             cccCCCCHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEE
Confidence            34445556666668888888999999999999999999999886  3689999999999999999998888876699999


Q ss_pred             ccccCCCCCCCCCCCCCEEEEe-----CCChhchHHHHHhcccCCCEEEEEeCCH---------------------HHHH
Q 026506          167 RDIQGQGFPDEFSGLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSPCI---------------------EQVQ  220 (237)
Q Consensus       167 ~d~~~~~~~~~~~~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~---------------------~~~~  220 (237)
                      +|+.+..+ .   +.||+|++.     .+++..+++++.+.|||||++++..+..                     ....
T Consensus        93 ~d~~~~~~-~---~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (256)
T 1nkv_A           93 NDAAGYVA-N---EKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLP  168 (256)
T ss_dssp             SCCTTCCC-S---SCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHH
T ss_pred             CChHhCCc-C---CCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHH
Confidence            99986433 3   789999863     3456678999999999999999865421                     0125


Q ss_pred             HHHHHHHh-cCccccc
Q 026506          221 RSCESLRL-NFTGKES  235 (237)
Q Consensus       221 ~~~~~l~~-~f~~v~~  235 (237)
                      ++.+.+++ ||..+++
T Consensus       169 ~~~~~l~~aGf~~~~~  184 (256)
T 1nkv_A          169 GLVGAFDDLGYDVVEM  184 (256)
T ss_dssp             HHHHHHHTTTBCCCEE
T ss_pred             HHHHHHHHCCCeeEEE
Confidence            67777887 8887654

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.75  E-value=7.5e-17  Score=125.02  Aligned_cols=123  Identities=19%  Similarity=0.294  Sum_probs=103.6

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC--CCCCCCCCCCE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--FPDEFSGLADS  184 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~~~D~  184 (237)
                      .++.+|||+|||+|.++..++... +..+++++|+++.+++.|++++...++.+ +.+..+|+.+..  ++.   +.||+
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~---~~~D~  114 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGVPN-IKLLWVDGSDLTDYFED---GEIDR  114 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCCSS-EEEEECCSSCGGGTSCT---TCCSE
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHC-CCCCEEEEEcCHHHHHHHHHHHHHcCCCC-EEEEeCCHHHHHhhcCC---CCCCE
Confidence            467899999999999999999885 56799999999999999999999888755 999999997522  333   67999


Q ss_pred             EEEeCCChh-------------chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCcccc
Q 026506          185 IFLDLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGKE  234 (237)
Q Consensus       185 v~~~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~  234 (237)
                      |+++.+.+|             .+++.+.+.|+|||.+++........+.+.+.+.+ +|..++
T Consensus       115 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~  178 (214)
T 1yzh_A          115 LYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNG  178 (214)
T ss_dssp             EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEE
T ss_pred             EEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeeee
Confidence            999988753             58999999999999999888777777888888887 776543

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.72  E-value=3.9e-17  Score=130.36  Aligned_cols=103  Identities=18%  Similarity=0.204  Sum_probs=86.3

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVA-PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      ++++.+|||+|||+|..+..+++... +..+|+++|+|+.+++.|++++...+...++++.++|+.+  ++.   +.||+
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~--~~~---~~~d~  142 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD--IAI---ENASM  142 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTT--CCC---CSEEE
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccc--ccc---ccccc
Confidence            68899999999999999999998763 3469999999999999999999888877779999999976  343   56999


Q ss_pred             EEEeCC-------ChhchHHHHHhcccCCCEEEEEe
Q 026506          185 IFLDLP-------QPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       185 v~~~~~-------~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      |++...       +...+++++++.|||||++++..
T Consensus       143 v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e  178 (261)
T 4gek_A          143 VVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE  178 (261)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEe
Confidence            987542       12357999999999999998763

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.72  E-value=1.7e-16  Score=123.01  Aligned_cols=121  Identities=15%  Similarity=0.247  Sum_probs=101.4

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC--CCCCCCCCCCE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--FPDEFSGLADS  184 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~~~D~  184 (237)
                      .++.+|||+|||+|.++..++... +..+++++|+++.+++.|++++...++.+ +.+..+|+.+..  ++.   +.||.
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~~~~~n-v~~~~~d~~~l~~~~~~---~~~d~  111 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEAQN-VKLLNIDADTLTDVFEP---GEVKR  111 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCCSS-EEEECCCGGGHHHHCCT---TSCCE
T ss_pred             CCCceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHHcCCCC-EEEEeCCHHHHHhhcCc---CCcCE
Confidence            467899999999999999999885 56899999999999999999999888766 999999987521  333   67999


Q ss_pred             EEEeCCChh-------------chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCcc
Q 026506          185 IFLDLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTG  232 (237)
Q Consensus       185 v~~~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~  232 (237)
                      |+++.+++|             .+++.+.+.|+|||.+++.+........+++.+.+ +|..
T Consensus       112 v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~  173 (213)
T 2fca_A          112 VYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLL  173 (213)
T ss_dssp             EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEE
T ss_pred             EEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCcc
Confidence            998876553             46899999999999999888887777788888877 6653

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.71  E-value=2.1e-16  Score=122.31  Aligned_cols=116  Identities=18%  Similarity=0.245  Sum_probs=96.3

Q ss_pred             cccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC
Q 026506           92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG  171 (237)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~  171 (237)
                      +++.....++..+...++ +|||+|||+|.++..++..  +..+++++|+++.+++.+++++...+...++++..+|+.+
T Consensus        28 ~~~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  104 (219)
T 3dlc_A           28 IYPIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHN  104 (219)
T ss_dssp             HHHHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTB
T ss_pred             ccHHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHH
Confidence            344444456677777776 9999999999999999887  4479999999999999999999988877679999999987


Q ss_pred             CCCCCCCCCCCCEEEEeC-----CChhchHHHHHhcccCCCEEEEEe
Q 026506          172 QGFPDEFSGLADSIFLDL-----PQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       172 ~~~~~~~~~~~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .+++.   +.||+|+++.     +++..+++++.+.|+|||++++..
T Consensus       105 ~~~~~---~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  148 (219)
T 3dlc_A          105 IPIED---NYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGG  148 (219)
T ss_dssp             CSSCT---TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCc---ccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEe
Confidence            55554   7899998754     455679999999999999999764

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.71  E-value=1.8e-16  Score=123.02  Aligned_cols=134  Identities=24%  Similarity=0.272  Sum_probs=109.5

Q ss_pred             HHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC
Q 026506           98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE  177 (237)
Q Consensus        98 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  177 (237)
                      ..++..+...++.+|||+|||+|.++..++...++..+++++|+++.+++.+++++...+..+ +++..+|+.+..++. 
T Consensus        27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~-  104 (219)
T 3dh0_A           27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKN-VEVLKSEENKIPLPD-  104 (219)
T ss_dssp             HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTT-EEEEECBTTBCSSCS-
T ss_pred             HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEecccccCCCCC-
Confidence            447777788899999999999999999999987666799999999999999999998888775 999999998655554 


Q ss_pred             CCCCCCEEEEeC-----CChhchHHHHHhcccCCCEEEEEeCCHH------------HHHHHHHHHHh-cCccccc
Q 026506          178 FSGLADSIFLDL-----PQPWLAIPSAKKMLKQDGILCSFSPCIE------------QVQRSCESLRL-NFTGKES  235 (237)
Q Consensus       178 ~~~~~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~~~------------~~~~~~~~l~~-~f~~v~~  235 (237)
                        +.||+|++..     +++..+++++.+.|+|||.+++......            ..+++.+.+++ ||..+++
T Consensus       105 --~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  178 (219)
T 3dh0_A          105 --NTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRV  178 (219)
T ss_dssp             --SCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEE
T ss_pred             --CCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEE
Confidence              7899998743     4566799999999999999998753211            24677777887 7886653

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.70  E-value=3.8e-16  Score=117.18  Aligned_cols=128  Identities=22%  Similarity=0.201  Sum_probs=104.1

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .++..+.+.++.+|||+|||+|.++..++... +..+++++|+++.+++.+++++...+...++ +...|..+ .++. .
T Consensus        16 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~-~~~~-~   91 (178)
T 3hm2_A           16 LAISALAPKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPR-AFDD-V   91 (178)
T ss_dssp             HHHHHHCCCTTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTG-GGGG-C
T ss_pred             HHHHHhcccCCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHh-hhhc-c
Confidence            36677788899999999999999999988875 5589999999999999999999988887458 77788753 3332 1


Q ss_pred             CCCCCEEEEeCCCh-hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cC
Q 026506          179 SGLADSIFLDLPQP-WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NF  230 (237)
Q Consensus       179 ~~~~D~v~~~~~~~-~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f  230 (237)
                      .+.||+|+++.... ..+++++.+.|+|||++++.....+......+.+++ ++
T Consensus        92 ~~~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~  145 (178)
T 3hm2_A           92 PDNPDVIFIGGGLTAPGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGG  145 (178)
T ss_dssp             CSCCSEEEECC-TTCTTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCC
T ss_pred             CCCCCEEEECCcccHHHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCC
Confidence            15799999866433 468999999999999999888888888888888877 44

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.70  E-value=3.7e-16  Score=118.60  Aligned_cols=130  Identities=16%  Similarity=0.198  Sum_probs=107.3

Q ss_pred             HHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEccccCCCCCC
Q 026506           98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS-FVTVGVRDIQGQGFPD  176 (237)
Q Consensus        98 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~~~  176 (237)
                      ..++..+...++.+|||+|||+|.++..++..   ..+++++|+++.+++.+++++...+..+ ++++..+|+.+ ..+.
T Consensus        42 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~  117 (194)
T 1dus_A           42 KILVENVVVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKD  117 (194)
T ss_dssp             HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTT
T ss_pred             HHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc-cccc
Confidence            34677777788999999999999999888876   4799999999999999999998877654 59999999874 3333


Q ss_pred             CCCCCCCEEEEeCCCh------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHhcCcccc
Q 026506          177 EFSGLADSIFLDLPQP------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGKE  234 (237)
Q Consensus       177 ~~~~~~D~v~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~v~  234 (237)
                         +.||+|+++.+-.      ..+++.+.+.|+|||.+++..+.....+++.+.+++.|.+++
T Consensus       118 ---~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~~~~~~  178 (194)
T 1dus_A          118 ---RKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVE  178 (194)
T ss_dssp             ---SCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCE
T ss_pred             ---CCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHHhcceE
Confidence               6899999987633      367899999999999999999888777778888877665554

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.69  E-value=7.1e-16  Score=120.64  Aligned_cols=123  Identities=20%  Similarity=0.193  Sum_probs=100.7

Q ss_pred             HhcCCCCCCEEEEEccC-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC-CCCCCCCC
Q 026506          102 MYLELVPGCLVLESGTG-SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGFPDEFS  179 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~G-~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~  179 (237)
                      ......++.+|||+||| +|.++..++...  ..+++++|+++.+++.|++++..++. + +++..+|+.. ..++.   
T Consensus        49 ~~~~~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~-v~~~~~d~~~~~~~~~---  121 (230)
T 3evz_A           49 LKTFLRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNS-N-VRLVKSNGGIIKGVVE---  121 (230)
T ss_dssp             HHTTCCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTC-C-CEEEECSSCSSTTTCC---
T ss_pred             hHhhcCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCC-C-cEEEeCCchhhhhccc---
Confidence            33446789999999999 999999998885  47999999999999999999998887 4 8999999643 23343   


Q ss_pred             CCCCEEEEeCCC------------------------hhchHHHHHhcccCCCEEEEEeCCH-HHHHHHHHHHHh-cCc
Q 026506          180 GLADSIFLDLPQ------------------------PWLAIPSAKKMLKQDGILCSFSPCI-EQVQRSCESLRL-NFT  231 (237)
Q Consensus       180 ~~~D~v~~~~~~------------------------~~~~l~~~~~~L~~gG~l~~~~~~~-~~~~~~~~~l~~-~f~  231 (237)
                      +.||+|++++|-                        ...+++.+.+.|+|||+++++.+.. ...+++.+.+++ +|.
T Consensus       122 ~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~  199 (230)
T 3evz_A          122 GTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYS  199 (230)
T ss_dssp             SCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCE
T ss_pred             CceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCc
Confidence            789999998763                        1457999999999999999887754 667888888888 674

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.69  E-value=2e-16  Score=123.02  Aligned_cols=122  Identities=18%  Similarity=0.258  Sum_probs=102.3

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC---CCCCCCCCCCC
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ---GFPDEFSGLAD  183 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~~~~D  183 (237)
                      .++.+|||+|||+|.++..++... +..+|+++|+++.+++.|++++...++.+ +.+..+|+.+.   .++.   +.+|
T Consensus        33 ~~~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~~~l~n-v~~~~~Da~~~l~~~~~~---~~~d  107 (218)
T 3dxy_A           33 REAPVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHEEGLSN-LRVMCHDAVEVLHKMIPD---NSLR  107 (218)
T ss_dssp             SCCCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHTTCSS-EEEECSCHHHHHHHHSCT---TCEE
T ss_pred             CCCCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHcCC---CChh
Confidence            367899999999999999999874 56899999999999999999999888877 99999998751   1444   7899


Q ss_pred             EEEEeCCChh-------------chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh--cCccc
Q 026506          184 SIFLDLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL--NFTGK  233 (237)
Q Consensus       184 ~v~~~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~--~f~~v  233 (237)
                      .|+++.+++|             .+++.+.+.|||||++++.+......+.+.+.+..  +|..+
T Consensus       108 ~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~~~~~~~~  172 (218)
T 3dxy_A          108 MVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSIDGYKNL  172 (218)
T ss_dssp             EEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEEEC
T ss_pred             eEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHhCCCcccc
Confidence            9999866553             38999999999999999988888888888888876  36544

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.68  E-value=3.3e-16  Score=125.37  Aligned_cols=132  Identities=19%  Similarity=0.233  Sum_probs=104.5

Q ss_pred             HHHHhcC-CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC
Q 026506           99 FVIMYLE-LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE  177 (237)
Q Consensus        99 ~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  177 (237)
                      .++..+. +.++.+|||+|||+|.++..++..  +..+++++|+++.+++.+++++...++.+++++..+|+.+.+++. 
T Consensus        36 ~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-  112 (267)
T 3kkz_A           36 KALSFIDNLTEKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRN-  112 (267)
T ss_dssp             HHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT-
T ss_pred             HHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCC-
Confidence            3555554 678999999999999999998887  457999999999999999999998888777999999997655444 


Q ss_pred             CCCCCCEEEEeCC----ChhchHHHHHhcccCCCEEEEEeCC-------H-------------HHHHHHHHHHHh-cCcc
Q 026506          178 FSGLADSIFLDLP----QPWLAIPSAKKMLKQDGILCSFSPC-------I-------------EQVQRSCESLRL-NFTG  232 (237)
Q Consensus       178 ~~~~~D~v~~~~~----~~~~~l~~~~~~L~~gG~l~~~~~~-------~-------------~~~~~~~~~l~~-~f~~  232 (237)
                        +.||+|++...    ++..+++++.+.|||||++++..+.       .             ....++.+.+++ ||..
T Consensus       113 --~~fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~  190 (267)
T 3kkz_A          113 --EELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLP  190 (267)
T ss_dssp             --TCEEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEE
T ss_pred             --CCEEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEE
Confidence              78999986432    5567899999999999999977542       0             123456667777 7876


Q ss_pred             ccc
Q 026506          233 KES  235 (237)
Q Consensus       233 v~~  235 (237)
                      +++
T Consensus       191 v~~  193 (267)
T 3kkz_A          191 VAT  193 (267)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.68  E-value=5.4e-16  Score=123.21  Aligned_cols=131  Identities=17%  Similarity=0.197  Sum_probs=104.1

Q ss_pred             HHHHhc-CCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC
Q 026506           99 FVIMYL-ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE  177 (237)
Q Consensus        99 ~~~~~~-~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  177 (237)
                      .++..+ .+.++.+|||+|||+|.++..+++.. + .+++++|+++.+++.+++++...++.+++++..+|+.+.+++. 
T Consensus        36 ~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-  112 (257)
T 3f4k_A           36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYV-K-GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQN-  112 (257)
T ss_dssp             HHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHC-C-SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCT-
T ss_pred             HHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhC-C-CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCC-
Confidence            345555 56788999999999999999999885 3 4999999999999999999999898888999999997655554 


Q ss_pred             CCCCCCEEEEeC----CChhchHHHHHhcccCCCEEEEEeCC--------------------HHHHHHHHHHHHh-cCcc
Q 026506          178 FSGLADSIFLDL----PQPWLAIPSAKKMLKQDGILCSFSPC--------------------IEQVQRSCESLRL-NFTG  232 (237)
Q Consensus       178 ~~~~~D~v~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~--------------------~~~~~~~~~~l~~-~f~~  232 (237)
                        +.||+|++..    .++..+++++.+.|+|||++++..+.                    .....++.+.+++ ||..
T Consensus       113 --~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~  190 (257)
T 3f4k_A          113 --EELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTP  190 (257)
T ss_dssp             --TCEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEE
T ss_pred             --CCEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeE
Confidence              7899998643    24567899999999999999987642                    0123556667777 7876


Q ss_pred             cc
Q 026506          233 KE  234 (237)
Q Consensus       233 v~  234 (237)
                      ++
T Consensus       191 v~  192 (257)
T 3f4k_A          191 TA  192 (257)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.68  E-value=1.8e-16  Score=121.11  Aligned_cols=109  Identities=21%  Similarity=0.304  Sum_probs=90.9

Q ss_pred             HhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCCCCCC
Q 026506          102 MYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSG  180 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~  180 (237)
                      ....++++.+|||+|||+|.++..++...++.++++++|+++.+++.|++++...++..++++..+|+.+.. ...   +
T Consensus        16 ~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~   92 (197)
T 3eey_A           16 IKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYID---C   92 (197)
T ss_dssp             HHHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCC---S
T ss_pred             HHhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhcc---C
Confidence            344567889999999999999999999886667999999999999999999998887556999999987522 222   6


Q ss_pred             CCCEEEEeCCC--------------hhchHHHHHhcccCCCEEEEEe
Q 026506          181 LADSIFLDLPQ--------------PWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       181 ~~D~v~~~~~~--------------~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .||+|+++.+-              ...+++++.+.|+|||++++..
T Consensus        93 ~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~  139 (197)
T 3eey_A           93 PVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI  139 (197)
T ss_dssp             CEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence            89999988642              2358999999999999998775

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.67  E-value=1.5e-15  Score=118.59  Aligned_cols=128  Identities=20%  Similarity=0.221  Sum_probs=90.2

Q ss_pred             cCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCC
Q 026506          104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLAD  183 (237)
Q Consensus       104 ~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D  183 (237)
                      +.+++|++|||+|||+|.++.+++..+++.++|+++|+++.+++.+.+.....  .+ +.+..+|+..........+.||
T Consensus        72 ~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~n-v~~i~~Da~~~~~~~~~~~~~D  148 (232)
T 3id6_C           72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--PN-IFPLLADARFPQSYKSVVENVD  148 (232)
T ss_dssp             CSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--TT-EEEEECCTTCGGGTTTTCCCEE
T ss_pred             cCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CC-eEEEEcccccchhhhccccceE
Confidence            34889999999999999999999999887889999999999876555444332  34 8999999875221111226799


Q ss_pred             EEEEeCCChhc--h-HHHHHhcccCCCEEEEEe--CCHHH-------HHHHHHHHHh-cCcccc
Q 026506          184 SIFLDLPQPWL--A-IPSAKKMLKQDGILCSFS--PCIEQ-------VQRSCESLRL-NFTGKE  234 (237)
Q Consensus       184 ~v~~~~~~~~~--~-l~~~~~~L~~gG~l~~~~--~~~~~-------~~~~~~~l~~-~f~~v~  234 (237)
                      +|++|.+.+..  . ...+.+.|||||++++..  +|.+.       .+...+.|++ +|+-++
T Consensus       149 ~I~~d~a~~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~  212 (232)
T 3id6_C          149 VLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQ  212 (232)
T ss_dssp             EEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEE
T ss_pred             EEEecCCChhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEE
Confidence            99999876542  2 445566999999998764  33211       2455567766 676444

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.67  E-value=4.2e-16  Score=124.31  Aligned_cols=128  Identities=16%  Similarity=0.167  Sum_probs=103.1

Q ss_pred             HHHhcCCC-CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC--CCC
Q 026506          100 VIMYLELV-PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--FPD  176 (237)
Q Consensus       100 ~~~~~~~~-~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~  176 (237)
                      +...+... ++.+|||+|||+|.++..++... + .+++++|+++.+++.|++++..+++.+++++..+|+.+..  ++.
T Consensus        40 l~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~-~-~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~  117 (259)
T 3lpm_A           40 LAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRT-K-AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPK  117 (259)
T ss_dssp             HHHHCCCCSSCCEEEETTCTTTHHHHHHHTTC-C-CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCT
T ss_pred             HHHHhcCCCCCCEEEEcCCchhHHHHHHHHhc-C-CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhcc
Confidence            45566777 89999999999999999888773 3 4999999999999999999999998877999999997622  223


Q ss_pred             CCCCCCCEEEEeCCCh-------------------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cC
Q 026506          177 EFSGLADSIFLDLPQP-------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NF  230 (237)
Q Consensus       177 ~~~~~~D~v~~~~~~~-------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f  230 (237)
                         +.||+|++|+|-.                         ..+++.+.+.|+|||+++++.+. ....++.+.+++ +|
T Consensus       118 ---~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~l~~~~~  193 (259)
T 3lpm_A          118 ---ERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP-ERLLDIIDIMRKYRL  193 (259)
T ss_dssp             ---TCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT-TTHHHHHHHHHHTTE
T ss_pred             ---CCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH-HHHHHHHHHHHHCCC
Confidence               7899999987631                         24789999999999999987653 456777788877 66


Q ss_pred             ccc
Q 026506          231 TGK  233 (237)
Q Consensus       231 ~~v  233 (237)
                      ...
T Consensus       194 ~~~  196 (259)
T 3lpm_A          194 EPK  196 (259)
T ss_dssp             EEE
T ss_pred             ceE
Confidence            543

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.67  E-value=6.8e-16  Score=123.01  Aligned_cols=113  Identities=25%  Similarity=0.282  Sum_probs=93.9

Q ss_pred             cccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC
Q 026506           94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG  173 (237)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~  173 (237)
                      ......++..+...++.+|||+|||+|.++..++...   .+++++|+++.+++.+++++...+..+ +.+..+|+.+.+
T Consensus        23 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~-v~~~~~d~~~l~   98 (260)
T 1vl5_A           23 GSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQ-VEYVQGDAEQMP   98 (260)
T ss_dssp             CCCHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCC-CCC
T ss_pred             HHHHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEecHHhCC
Confidence            3344457777888899999999999999998888763   489999999999999999988877766 999999998655


Q ss_pred             CCCCCCCCCCEEEEe-----CCChhchHHHHHhcccCCCEEEEEe
Q 026506          174 FPDEFSGLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       174 ~~~~~~~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +++   +.||+|++.     .+++..+++++.+.|||||++++..
T Consensus        99 ~~~---~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~  140 (260)
T 1vl5_A           99 FTD---ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVD  140 (260)
T ss_dssp             SCT---TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCC---CCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence            554   789999875     3466689999999999999998753

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.67  E-value=1.2e-15  Score=122.49  Aligned_cols=106  Identities=16%  Similarity=0.038  Sum_probs=88.7

Q ss_pred             HhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCC
Q 026506          102 MYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL  181 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  181 (237)
                      ..++++++++|||+|||+|.++..+++.. +.++|+++|+++++++.|+++++..++ +++++..+|+.+  ++.   +.
T Consensus       116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~-~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~--l~d---~~  188 (298)
T 3fpf_A          116 ALGRFRRGERAVFIGGGPLPLTGILLSHV-YGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETV--IDG---LE  188 (298)
T ss_dssp             HHTTCCTTCEEEEECCCSSCHHHHHHHHT-TCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGG--GGG---CC
T ss_pred             HHcCCCCcCEEEEECCCccHHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhh--CCC---CC
Confidence            45788999999999999988775555443 357999999999999999999998888 559999999975  443   78


Q ss_pred             CCEEEEeCC--ChhchHHHHHhcccCCCEEEEEeC
Q 026506          182 ADSIFLDLP--QPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       182 ~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ||+|+++..  +...+++++.+.|||||++++...
T Consensus       189 FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          189 FDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             CSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             cCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence            999998653  445799999999999999997764

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.66  E-value=5.2e-16  Score=127.19  Aligned_cols=109  Identities=28%  Similarity=0.340  Sum_probs=92.3

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      +...+++.++.+|||+|||+|..+.+++..+++.++|+++|+++.+++.++++++.+++.+ +++..+|+.......   
T Consensus       110 ~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~-v~~~~~D~~~~~~~~---  185 (315)
T 1ixk_A          110 PPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN-VILFHSSSLHIGELN---  185 (315)
T ss_dssp             HHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS-EEEESSCGGGGGGGC---
T ss_pred             HHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCe-EEEEECChhhccccc---
Confidence            4567788999999999999999999999987666899999999999999999999999876 999999987522222   


Q ss_pred             CCCCEEEEeCCCh---------------------------hchHHHHHhcccCCCEEEEE
Q 026506          180 GLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       180 ~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~gG~l~~~  212 (237)
                      +.||+|++|+|+.                           ..+++++.+.|||||++++.
T Consensus       186 ~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~s  245 (315)
T 1ixk_A          186 VEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYS  245 (315)
T ss_dssp             CCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence            6799999987731                           26789999999999999853

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.66  E-value=5.3e-16  Score=119.32  Aligned_cols=121  Identities=21%  Similarity=0.225  Sum_probs=101.0

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..++.+|||+|||+|.++..+++.  +..+++++|+++.+++.|++++...+..+ +++..+|+.+  ...   +.||+|
T Consensus        58 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~--~~~---~~fD~i  129 (205)
T 3grz_A           58 MVKPLTVADVGTGSGILAIAAHKL--GAKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLA--DVD---GKFDLI  129 (205)
T ss_dssp             CSSCCEEEEETCTTSHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTT--TCC---SCEEEE
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccc--cCC---CCceEE
Confidence            567899999999999999887764  44699999999999999999999888877 9999999874  333   789999


Q ss_pred             EEeCCCh--hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCcccc
Q 026506          186 FLDLPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGKE  234 (237)
Q Consensus       186 ~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~  234 (237)
                      +.+.+..  ..+++++.+.|+|||++++......+.+.+.+.+++ +|..++
T Consensus       130 ~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~  181 (205)
T 3grz_A          130 VANILAEILLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDL  181 (205)
T ss_dssp             EEESCHHHHHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEE
T ss_pred             EECCcHHHHHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEE
Confidence            9987644  357899999999999999876666677888888888 787654

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.66  E-value=7.4e-16  Score=121.15  Aligned_cols=122  Identities=14%  Similarity=0.270  Sum_probs=97.7

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH------cCCCCcEEEEEccccC-CC--CCC
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER------TGVSSFVTVGVRDIQG-QG--FPD  176 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~------~~~~~~i~~~~~d~~~-~~--~~~  176 (237)
                      ..++.+|||||||+|.++..++... +...++++|+++.+++.|++++..      .+..+ +.+..+|+.+ ..  ++.
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~n-v~~~~~d~~~~l~~~~~~  121 (235)
T 3ckk_A           44 AQAQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQN-IACLRSNAMKHLPNFFYK  121 (235)
T ss_dssp             --CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTT-EEEEECCTTTCHHHHCCT
T ss_pred             cCCCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCe-EEEEECcHHHhhhhhCCC
Confidence            4567799999999999999988774 567999999999999999988764      34555 9999999874 22  334


Q ss_pred             CCCCCCCEEEEeCCChh-------------chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-c-Ccc
Q 026506          177 EFSGLADSIFLDLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-N-FTG  232 (237)
Q Consensus       177 ~~~~~~D~v~~~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~-f~~  232 (237)
                         +.+|.|+++.+++|             .+++.+.+.|+|||.+++.+........+.+.+.+ + |..
T Consensus       122 ---~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~~~f~~  189 (235)
T 3ckk_A          122 ---GQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFER  189 (235)
T ss_dssp             ---TCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEEE
T ss_pred             ---cCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHCCCccc
Confidence               78999999887765             58999999999999999988888777888888877 3 553

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.66  E-value=1.2e-15  Score=115.59  Aligned_cols=129  Identities=20%  Similarity=0.223  Sum_probs=107.4

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .++..+...++.+|||+|||+|.++..++...   .+++++|+++.+++.+++++...+...++++..+|+.+ .++.. 
T Consensus        24 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~-   98 (192)
T 1l3i_A           24 LIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKI-   98 (192)
T ss_dssp             HHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTS-
T ss_pred             HHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccC-
Confidence            36667788899999999999999998888763   79999999999999999999888874559999999864 23321 


Q ss_pred             CCCCCEEEEeCC--ChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCcccc
Q 026506          179 SGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGKE  234 (237)
Q Consensus       179 ~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~  234 (237)
                       +.||+|+++.+  ....+++.+.+.|+|||.+++..+......++.+.+++ +| .++
T Consensus        99 -~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~-~~~  155 (192)
T 1l3i_A           99 -PDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGF-DVN  155 (192)
T ss_dssp             -CCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTC-CCE
T ss_pred             -CCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCC-ceE
Confidence             47999998764  34578999999999999999988888888999999998 78 444

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.66  E-value=1.2e-15  Score=124.95  Aligned_cols=111  Identities=14%  Similarity=0.182  Sum_probs=94.0

Q ss_pred             HHHHhcC-CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC
Q 026506           99 FVIMYLE-LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE  177 (237)
Q Consensus        99 ~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  177 (237)
                      .++..+. +.++.+|||+|||+|.++..+++..  ..+|+++|+++.+++.|++++...++.+++++..+|+.+.+++. 
T Consensus       107 ~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-  183 (312)
T 3vc1_A          107 FLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDK-  183 (312)
T ss_dssp             HHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT-
T ss_pred             HHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCC-
Confidence            3556666 7889999999999999999999885  36899999999999999999999888767999999998655554 


Q ss_pred             CCCCCCEEEEeC----CChhchHHHHHhcccCCCEEEEEeC
Q 026506          178 FSGLADSIFLDL----PQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       178 ~~~~~D~v~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                        +.||+|+...    .+...+++++.+.|||||++++..+
T Consensus       184 --~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~  222 (312)
T 3vc1_A          184 --GAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITG  222 (312)
T ss_dssp             --TCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --CCEeEEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence              7899998642    2466799999999999999997763

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.65  E-value=8.9e-16  Score=122.53  Aligned_cols=129  Identities=19%  Similarity=0.246  Sum_probs=102.9

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH---cCCCCcEEEEEccccCC----
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER---TGVSSFVTVGVRDIQGQ----  172 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~---~~~~~~i~~~~~d~~~~----  172 (237)
                      +...+...++.+|||+|||+|.++..++... +..+++++|+++.+++.|++++..   +++.+++++..+|+.+.    
T Consensus        28 L~~~~~~~~~~~VLDlG~G~G~~~l~la~~~-~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~  106 (260)
T 2ozv_A           28 LASLVADDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKAR  106 (260)
T ss_dssp             HHHTCCCCSCEEEEECCSSSSHHHHHHHHHC-TTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHH
T ss_pred             HHHHhcccCCCEEEEeCChHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhh
Confidence            4556677788999999999999999999885 457999999999999999999987   77776799999999753    


Q ss_pred             ---CCCCCCCCCCCEEEEeCCC-----------------------hhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHH
Q 026506          173 ---GFPDEFSGLADSIFLDLPQ-----------------------PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL  226 (237)
Q Consensus       173 ---~~~~~~~~~~D~v~~~~~~-----------------------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l  226 (237)
                         .++.   +.||+|++|+|-                       ...+++.+.+.|+|||+++++.+. .+..++.+.+
T Consensus       107 ~~~~~~~---~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~l  182 (260)
T 2ozv_A          107 VEAGLPD---EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP-QSVAEIIAAC  182 (260)
T ss_dssp             HHTTCCT---TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECG-GGHHHHHHHH
T ss_pred             hhhccCC---CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH-HHHHHHHHHH
Confidence               1223   689999998652                       224688899999999999987764 4567777777


Q ss_pred             HhcCccc
Q 026506          227 RLNFTGK  233 (237)
Q Consensus       227 ~~~f~~v  233 (237)
                      ++.|..+
T Consensus       183 ~~~~~~~  189 (260)
T 2ozv_A          183 GSRFGGL  189 (260)
T ss_dssp             TTTEEEE
T ss_pred             HhcCCce
Confidence            7655443

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.65  E-value=5.1e-15  Score=111.29  Aligned_cols=122  Identities=14%  Similarity=0.198  Sum_probs=103.4

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .++..+...++.+|||+|||+|.++..++.   +..+++++|+++.+++.+++++..+++.+ +++..+|+.+ .++.  
T Consensus        26 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~~~d~~~-~~~~--   98 (183)
T 2yxd_A           26 VSIGKLNLNKDDVVVDVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFNIKN-CQIIKGRAED-VLDK--   98 (183)
T ss_dssp             HHHHHHCCCTTCEEEEESCCCSHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHHTTCCS-EEEEESCHHH-HGGG--
T ss_pred             HHHHHcCCCCCCEEEEeCCCCCHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEECCccc-cccC--
Confidence            466777888899999999999999988887   35799999999999999999999888755 9999999875 4444  


Q ss_pred             CCCCCEEEEeCC-ChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cC
Q 026506          179 SGLADSIFLDLP-QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NF  230 (237)
Q Consensus       179 ~~~~D~v~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f  230 (237)
                       +.||+|+++.+ ....+++.+.+.  |||.+++..+......+..+.+++ +|
T Consensus        99 -~~~D~i~~~~~~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~  149 (183)
T 2yxd_A           99 -LEFNKAFIGGTKNIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGY  149 (183)
T ss_dssp             -CCCSEEEECSCSCHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             -CCCcEEEECCcccHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCC
Confidence             67999998776 444677777777  999999999889999999999988 65

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.65  E-value=1.4e-15  Score=123.53  Aligned_cols=111  Identities=18%  Similarity=0.224  Sum_probs=94.0

Q ss_pred             HHHHhc----CCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCC
Q 026506           99 FVIMYL----ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF  174 (237)
Q Consensus        99 ~~~~~~----~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~  174 (237)
                      .++..+    ...++.+|||+|||+|.++..+++..  ..+++++|+++.+++.++++....+...++++..+|+.+.++
T Consensus        69 ~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  146 (297)
T 2o57_A           69 WLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC  146 (297)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS
T ss_pred             HHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCC
Confidence            355666    77889999999999999999999886  258999999999999999999888887679999999987555


Q ss_pred             CCCCCCCCCEEEEe-----CCChhchHHHHHhcccCCCEEEEEeC
Q 026506          175 PDEFSGLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       175 ~~~~~~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +.   +.||+|++.     .+++..+++++.+.|||||++++..+
T Consensus       147 ~~---~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  188 (297)
T 2o57_A          147 ED---NSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP  188 (297)
T ss_dssp             CT---TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CC---CCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            54   789999864     34556789999999999999997754

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.64  E-value=2.1e-15  Score=116.27  Aligned_cols=114  Identities=25%  Similarity=0.186  Sum_probs=94.5

Q ss_pred             cccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC
Q 026506           94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG  173 (237)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~  173 (237)
                      +.....++..+...++.+|||+|||+|.++..++..   ..+++++|+++.+++.+++++...+..+ +++..+|+.+..
T Consensus        63 ~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~  138 (210)
T 3lbf_A           63 PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLDLHN-VSTRHGDGWQGW  138 (210)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCc-eEEEECCcccCC
Confidence            444455778888899999999999999999999887   3799999999999999999999888776 999999997533


Q ss_pred             CCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCC
Q 026506          174 FPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       174 ~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      .+.   +.||+|+++...+. ..+.+.+.|+|||++++..+.
T Consensus       139 ~~~---~~~D~i~~~~~~~~-~~~~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          139 QAR---APFDAIIVTAAPPE-IPTALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             GGG---CCEEEEEESSBCSS-CCTHHHHTEEEEEEEEEEECS
T ss_pred             ccC---CCccEEEEccchhh-hhHHHHHhcccCcEEEEEEcC
Confidence            232   68999998765433 556889999999999987765

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.64  E-value=5.2e-15  Score=120.51  Aligned_cols=108  Identities=19%  Similarity=0.209  Sum_probs=92.2

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .++..+.+.++.+|||+|||+|.++..+++..+  .+|+++|+++.+++.|++++...++..++++..+|+.+  + .  
T Consensus        63 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~-~--  135 (302)
T 3hem_A           63 LALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE--F-D--  135 (302)
T ss_dssp             HHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGG--C-C--
T ss_pred             HHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHH--c-C--
Confidence            366777889999999999999999999998863  78999999999999999999988887679999999975  3 3  


Q ss_pred             CCCCCEEEEe-----CCCh---------hchHHHHHhcccCCCEEEEEeC
Q 026506          179 SGLADSIFLD-----LPQP---------WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       179 ~~~~D~v~~~-----~~~~---------~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                       +.||+|++.     .+++         ..+++++.+.|||||++++...
T Consensus       136 -~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  184 (302)
T 3hem_A          136 -EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI  184 (302)
T ss_dssp             -CCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred             -CCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence             789999874     3333         3689999999999999997654

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.64  E-value=1.3e-15  Score=120.67  Aligned_cols=110  Identities=23%  Similarity=0.266  Sum_probs=90.7

Q ss_pred             cCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC--CCCCCCCCC
Q 026506          104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDEFSGL  181 (237)
Q Consensus       104 ~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~  181 (237)
                      +...++.+|||+|||+|..+..++..+++..+|+++|+++.+++.|++++...++.+++++..+|+.+.  .+..  .+.
T Consensus        59 ~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~--~~~  136 (248)
T 3tfw_A           59 VRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGE--CPA  136 (248)
T ss_dssp             HHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCS--CCC
T ss_pred             HhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCC--CCC
Confidence            355678999999999999999999887546899999999999999999999989876799999998641  1111  148


Q ss_pred             CCEEEEeCCCh--hchHHHHHhcccCCCEEEEEeCC
Q 026506          182 ADSIFLDLPQP--WLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       182 ~D~v~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      ||+|+++.+..  ..+++.+.+.|+|||++++....
T Consensus       137 fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~~  172 (248)
T 3tfw_A          137 FDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDNVV  172 (248)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred             eEEEEECCchHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence            99999987643  36899999999999999876543

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.64  E-value=1.1e-15  Score=119.04  Aligned_cols=109  Identities=13%  Similarity=0.060  Sum_probs=88.9

Q ss_pred             hcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccCCCCCCCCCCC
Q 026506          103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS-SFVTVGVRDIQGQGFPDEFSGL  181 (237)
Q Consensus       103 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~  181 (237)
                      ..+.+++.+|||+|||+|..+..++..+++.++++++|+++++++.|+++++..++. +++++..+|+.+. ++....+.
T Consensus        51 ~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~-l~~~~~~~  129 (221)
T 3dr5_A           51 TTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDV-MSRLANDS  129 (221)
T ss_dssp             HSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH-GGGSCTTC
T ss_pred             hhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHH-HHHhcCCC
Confidence            334445569999999999999999998766789999999999999999999998987 6799999998651 11111278


Q ss_pred             CCEEEEeCCC--hhchHHHHHhcccCCCEEEEE
Q 026506          182 ADSIFLDLPQ--PWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       182 ~D~v~~~~~~--~~~~l~~~~~~L~~gG~l~~~  212 (237)
                      ||+||++...  ...+++.+.+.|+|||++++.
T Consensus       130 fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d  162 (221)
T 3dr5_A          130 YQLVFGQVSPMDLKALVDAAWPLLRRGGALVLA  162 (221)
T ss_dssp             EEEEEECCCTTTHHHHHHHHHHHEEEEEEEEET
T ss_pred             cCeEEEcCcHHHHHHHHHHHHHHcCCCcEEEEe
Confidence            9999998653  346899999999999999964

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.64  E-value=1.2e-15  Score=120.10  Aligned_cols=109  Identities=22%  Similarity=0.238  Sum_probs=92.8

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .++..+++.++.+|||+|||+|.++..++...   .+++++|+++.+++.+++++...+..+ +++..+|+.+.+++.  
T Consensus        12 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~--   85 (239)
T 1xxl_A           12 LMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVEN-VRFQQGTAESLPFPD--   85 (239)
T ss_dssp             HHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCS-EEEEECBTTBCCSCT--
T ss_pred             hHHHHhCcCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCC-eEEEecccccCCCCC--
Confidence            47788889999999999999999998888763   589999999999999999998888766 999999997655544  


Q ss_pred             CCCCCEEEEeC-----CChhchHHHHHhcccCCCEEEEEeC
Q 026506          179 SGLADSIFLDL-----PQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       179 ~~~~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                       +.||+|++..     +++..+++++.+.|+|||++++..+
T Consensus        86 -~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  125 (239)
T 1xxl_A           86 -DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDH  125 (239)
T ss_dssp             -TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -CcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEc
Confidence             7899998753     4566789999999999999997643

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.64  E-value=1.6e-15  Score=120.17  Aligned_cols=127  Identities=13%  Similarity=0.008  Sum_probs=100.1

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..++.+|||+|||+|..++.++... +..+|+++|+++.+++.+++++..+++.+ +++..+|+.+........+.||+|
T Consensus        78 ~~~~~~vLDiG~G~G~~~i~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~l~~-v~~~~~d~~~~~~~~~~~~~fD~I  155 (249)
T 3g89_A           78 WQGPLRVLDLGTGAGFPGLPLKIVR-PELELVLVDATRKKVAFVERAIEVLGLKG-ARALWGRAEVLAREAGHREAYARA  155 (249)
T ss_dssp             CCSSCEEEEETCTTTTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEECCHHHHTTSTTTTTCEEEE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCc-eEEEECcHHHhhcccccCCCceEE
Confidence            3578899999999999999988875 56899999999999999999999999877 999999987532211112679999


Q ss_pred             EEeCC-ChhchHHHHHhcccCCCEEEEEeC--CHHHHHHHHHHHHh-cCcccc
Q 026506          186 FLDLP-QPWLAIPSAKKMLKQDGILCSFSP--CIEQVQRSCESLRL-NFTGKE  234 (237)
Q Consensus       186 ~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~--~~~~~~~~~~~l~~-~f~~v~  234 (237)
                      ++... ....+++.+.+.|+|||+++++..  ..+....+...++. +|...+
T Consensus       156 ~s~a~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~  208 (249)
T 3g89_A          156 VARAVAPLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGE  208 (249)
T ss_dssp             EEESSCCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEE
T ss_pred             EECCcCCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEE
Confidence            98754 345688999999999999987764  34666667777776 665443

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.64  E-value=1.8e-15  Score=121.61  Aligned_cols=108  Identities=31%  Similarity=0.422  Sum_probs=91.8

Q ss_pred             HHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506          101 IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG  180 (237)
Q Consensus       101 ~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  180 (237)
                      .......++.+|||+|||+|.++..++... +..+++++|+++.+++.+++++...+..+ +++...|+.+..++.   +
T Consensus        30 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~---~  104 (276)
T 3mgg_A           30 HHDTVYPPGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTEKNGIKN-VKFLQANIFSLPFED---S  104 (276)
T ss_dssp             HTTCCCCTTCEEEETTCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCGGGCCSCT---T
T ss_pred             hhcccCCCCCeEEEecCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCC-cEEEEcccccCCCCC---C
Confidence            334456789999999999999999999884 56899999999999999999998888766 999999998655554   7


Q ss_pred             CCCEEEEe-----CCChhchHHHHHhcccCCCEEEEEe
Q 026506          181 LADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       181 ~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .||+|++.     .+++..+++++.+.|+|||.+++..
T Consensus       105 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  142 (276)
T 3mgg_A          105 SFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIE  142 (276)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            89999874     3566689999999999999999865

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.63  E-value=1.1e-15  Score=115.55  Aligned_cols=103  Identities=19%  Similarity=0.247  Sum_probs=83.1

Q ss_pred             CCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC-CCCCCCCCCCC
Q 026506          105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GFPDEFSGLAD  183 (237)
Q Consensus       105 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~~~D  183 (237)
                      .+.++.+|||+|||+|.++..++..   ..+|+++|+++.+++.|++++...++.+ +++...|.... .+..   +.||
T Consensus        19 ~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~~~-v~~~~~~~~~l~~~~~---~~fD   91 (185)
T 3mti_A           19 VLDDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGIEN-TELILDGHENLDHYVR---EPIR   91 (185)
T ss_dssp             TCCTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTCCC-EEEEESCGGGGGGTCC---SCEE
T ss_pred             hCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEeCcHHHHHhhcc---CCcC
Confidence            4678999999999999999998876   4799999999999999999999888854 89888776541 1222   6799


Q ss_pred             EEEEeCC--------------ChhchHHHHHhcccCCCEEEEEeC
Q 026506          184 SIFLDLP--------------QPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       184 ~v~~~~~--------------~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +|+.+.+              .....++++.+.|||||++++...
T Consensus        92 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  136 (185)
T 3mti_A           92 AAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY  136 (185)
T ss_dssp             EEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence            9998742              112467999999999999987654

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.63  E-value=2e-15  Score=117.13  Aligned_cols=122  Identities=15%  Similarity=0.124  Sum_probs=97.9

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      +.++.+|+|+|||+|.+++.++.. ++..+|+++|+++.+++.|++|++.+++.+++++..+|..+ .++..  ..||+|
T Consensus        13 v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~-~l~~~--~~~D~I   88 (225)
T 3kr9_A           13 VSQGAILLDVGSDHAYLPIELVER-GQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLA-AFEET--DQVSVI   88 (225)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG-GCCGG--GCCCEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhh-hcccC--cCCCEE
Confidence            467889999999999999998876 45679999999999999999999999998889999999973 44431  269988


Q ss_pred             EEe-CCCh--hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCccc
Q 026506          186 FLD-LPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGK  233 (237)
Q Consensus       186 ~~~-~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v  233 (237)
                      ++. +...  ...++.+.+.|+++|++++ +|. .....+.+.|.+ ||.-+
T Consensus        89 viaG~Gg~~i~~Il~~~~~~L~~~~~lVl-q~~-~~~~~vr~~L~~~Gf~i~  138 (225)
T 3kr9_A           89 TIAGMGGRLIARILEEGLGKLANVERLIL-QPN-NREDDLRIWLQDHGFQIV  138 (225)
T ss_dssp             EEEEECHHHHHHHHHHTGGGCTTCCEEEE-EES-SCHHHHHHHHHHTTEEEE
T ss_pred             EEcCCChHHHHHHHHHHHHHhCCCCEEEE-ECC-CCHHHHHHHHHHCCCEEE
Confidence            753 3332  4678999999999999885 554 456777777777 77643

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.63  E-value=6.1e-15  Score=116.70  Aligned_cols=118  Identities=16%  Similarity=0.283  Sum_probs=96.6

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--------CCCCcEEEEEccccC-CC--C
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT--------GVSSFVTVGVRDIQG-QG--F  174 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------~~~~~i~~~~~d~~~-~~--~  174 (237)
                      ..++.+|||+|||+|.++..++... +..+++++|+++.+++.+++++..+        ++.+ +.+..+|+.+ ..  +
T Consensus        47 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~n-v~~~~~D~~~~l~~~~  124 (246)
T 2vdv_E           47 MTKKVTIADIGCGFGGLMIDLSPAF-PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQN-INVLRGNAMKFLPNFF  124 (246)
T ss_dssp             BSCCEEEEEETCTTSHHHHHHHHHS-TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTT-EEEEECCTTSCGGGTS
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhC-CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCc-EEEEeccHHHHHHHhc
Confidence            3567899999999999999998884 5579999999999999999998776        6655 9999999874 11  3


Q ss_pred             CCCCCCCCCEEEEeCCChh-------------chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh
Q 026506          175 PDEFSGLADSIFLDLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL  228 (237)
Q Consensus       175 ~~~~~~~~D~v~~~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~  228 (237)
                      +.   +.+|.|+++.++++             .+++.+.+.|+|||.+++.+......+.+.+.+.+
T Consensus       125 ~~---~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~  188 (246)
T 2vdv_E          125 EK---GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEE  188 (246)
T ss_dssp             CT---TCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred             cc---cccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHh
Confidence            33   67999998887775             68999999999999999887776655556656665

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.63  E-value=4.8e-15  Score=116.12  Aligned_cols=105  Identities=18%  Similarity=0.217  Sum_probs=85.2

Q ss_pred             HhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC--CCCCCC
Q 026506          102 MYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--FPDEFS  179 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~  179 (237)
                      ..+.+.++.+|||+|||+|.++..++...+ ..+|+++|+++.+++.+++++...  .+ +.+..+|+....  .+.  .
T Consensus        68 ~~~~~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~--~~-v~~~~~d~~~~~~~~~~--~  141 (230)
T 1fbn_A           68 KVMPIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER--EN-IIPILGDANKPQEYANI--V  141 (230)
T ss_dssp             CCCCCCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC--TT-EEEEECCTTCGGGGTTT--S
T ss_pred             cccCCCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcC--CC-eEEEECCCCCccccccc--C
Confidence            344567889999999999999999999864 579999999999999999986544  34 999999987510  111  1


Q ss_pred             CCCCEEEEeCCCh---hchHHHHHhcccCCCEEEEE
Q 026506          180 GLADSIFLDLPQP---WLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       180 ~~~D~v~~~~~~~---~~~l~~~~~~L~~gG~l~~~  212 (237)
                      +.||+|+.+.+.+   ..+++++.+.|+|||++++.
T Consensus       142 ~~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          142 EKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             CCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccEEEEEEecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            5799999887776   66799999999999999874

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.63  E-value=5.3e-16  Score=120.83  Aligned_cols=128  Identities=19%  Similarity=0.177  Sum_probs=96.7

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC--CCCC-
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPD-  176 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~-  176 (237)
                      +...+...++.+|||+|||+|..+..+++.+++..+|+++|+++.+++.|++++...++.+++++..+|+.+.  .+.. 
T Consensus        50 l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~  129 (221)
T 3u81_A           50 MDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKK  129 (221)
T ss_dssp             HHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTT
T ss_pred             HHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHh
Confidence            4444455678899999999999999999876556899999999999999999999989877799999998541  1110 


Q ss_pred             CCCCCCCEEEEeCCChh-----chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh
Q 026506          177 EFSGLADSIFLDLPQPW-----LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL  228 (237)
Q Consensus       177 ~~~~~~D~v~~~~~~~~-----~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~  228 (237)
                      ...+.||+|+++.....     ..++.+ +.|+|||++++........+++.+.+++
T Consensus       130 ~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~  185 (221)
T 3u81_A          130 YDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRG  185 (221)
T ss_dssp             SCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHH
T ss_pred             cCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhh
Confidence            00157999999875332     345555 8999999998665444445667777766

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.62  E-value=1.6e-15  Score=127.62  Aligned_cols=127  Identities=20%  Similarity=0.209  Sum_probs=101.1

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-----C-C-CCcEEEEEccccCC------
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-----G-V-SSFVTVGVRDIQGQ------  172 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----~-~-~~~i~~~~~d~~~~------  172 (237)
                      ..++.+|||+|||+|.++..++...++..+|+++|+++.+++.|+++++..     | . ..++++..+|+.+.      
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            568899999999999999999998766689999999999999999987654     3 2 13499999999763      


Q ss_pred             CCCCCCCCCCCEEEEeC-----CChhchHHHHHhcccCCCEEEEEeCCH----------------------HHHHHHHHH
Q 026506          173 GFPDEFSGLADSIFLDL-----PQPWLAIPSAKKMLKQDGILCSFSPCI----------------------EQVQRSCES  225 (237)
Q Consensus       173 ~~~~~~~~~~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~~----------------------~~~~~~~~~  225 (237)
                      +++.   +.||+|+.+.     +++..+++++.+.|||||++++..+..                      ...+++.+.
T Consensus       161 ~~~~---~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  237 (383)
T 4fsd_A          161 GVPD---SSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRL  237 (383)
T ss_dssp             CCCT---TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHH
T ss_pred             CCCC---CCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHH
Confidence            4554   7899999754     466789999999999999998764321                      112677788


Q ss_pred             HHh-cCccccc
Q 026506          226 LRL-NFTGKES  235 (237)
Q Consensus       226 l~~-~f~~v~~  235 (237)
                      +++ ||..+++
T Consensus       238 l~~aGF~~v~~  248 (383)
T 4fsd_A          238 VAEAGFRDVRL  248 (383)
T ss_dssp             HHHTTCCCEEE
T ss_pred             HHHCCCceEEE
Confidence            888 8987654

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.62  E-value=1.5e-15  Score=118.24  Aligned_cols=114  Identities=24%  Similarity=0.214  Sum_probs=91.6

Q ss_pred             hcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC--CCCCCCCC
Q 026506          103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDEFSG  180 (237)
Q Consensus       103 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~  180 (237)
                      .+...++.+|||+|||+|..+..++..+++..+++++|+++.+++.|++++...++.+++++..+|+.+.  .++....+
T Consensus        53 l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  132 (223)
T 3duw_A           53 LVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYE  132 (223)
T ss_dssp             HHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCC
T ss_pred             HHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCC
Confidence            3355678999999999999999999887546899999999999999999999889877799999998641  11110014


Q ss_pred             CCCEEEEeCCCh--hchHHHHHhcccCCCEEEEEeCCH
Q 026506          181 LADSIFLDLPQP--WLAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       181 ~~D~v~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                      .||+|+++.+..  ..+++.+.+.|+|||.+++..+..
T Consensus       133 ~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~  170 (223)
T 3duw_A          133 PFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVVR  170 (223)
T ss_dssp             CCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred             CcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence            699999987643  468999999999999998765443

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.62  E-value=5.4e-15  Score=118.98  Aligned_cols=128  Identities=17%  Similarity=0.236  Sum_probs=101.3

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ++..+. .++.+|||+|||+|.++..++... +..+++++|+++.+++.+++++..++..+ +++..+|+.+ .++.   
T Consensus       102 ~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~-v~~~~~d~~~-~~~~---  174 (276)
T 2b3t_A          102 ALARLP-EQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKN-IHILQSDWFS-ALAG---  174 (276)
T ss_dssp             HHHHSC-SSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCCS-EEEECCSTTG-GGTT---
T ss_pred             HHHhcc-cCCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEEcchhh-hccc---
Confidence            444444 567899999999999999999875 55799999999999999999999888775 9999999874 3333   


Q ss_pred             CCCCEEEEeCCCh------------------------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-
Q 026506          180 GLADSIFLDLPQP------------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-  228 (237)
Q Consensus       180 ~~~D~v~~~~~~~------------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-  228 (237)
                      +.||+|+.++|-.                              ..+++.+.+.|+|||.+++..+. .+.+++.+.+++ 
T Consensus       175 ~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~l~~~  253 (276)
T 2b3t_A          175 QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW-QQGEAVRQAFILA  253 (276)
T ss_dssp             CCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS-SCHHHHHHHHHHT
T ss_pred             CCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-hHHHHHHHHHHHC
Confidence            6799999986521                              24578889999999999976543 345667777777 


Q ss_pred             cCccccc
Q 026506          229 NFTGKES  235 (237)
Q Consensus       229 ~f~~v~~  235 (237)
                      +|..+++
T Consensus       254 Gf~~v~~  260 (276)
T 2b3t_A          254 GYHDVET  260 (276)
T ss_dssp             TCTTCCE
T ss_pred             CCcEEEE
Confidence            7876654

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.62  E-value=3e-15  Score=118.77  Aligned_cols=107  Identities=17%  Similarity=0.077  Sum_probs=86.9

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      +...+...++.+|||+|||+|.++..++.. + ..+++++|+++.+++.++++..    ..++++..+|+.+.+++.   
T Consensus        36 l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~---  106 (253)
T 3g5l_A           36 LKKMLPDFNQKTVLDLGCGFGWHCIYAAEH-G-AKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIAIEP---  106 (253)
T ss_dssp             HHTTCCCCTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCCCCT---
T ss_pred             HHHhhhccCCCEEEEECCCCCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCCCCC---
Confidence            455566668899999999999999988877 2 2489999999999999998754    344999999998655544   


Q ss_pred             CCCCEEEEeC-----CChhchHHHHHhcccCCCEEEEEeCC
Q 026506          180 GLADSIFLDL-----PQPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       180 ~~~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      +.||+|++..     ++...+++++.+.|+|||++++..+.
T Consensus       107 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  147 (253)
T 3g5l_A          107 DAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEH  147 (253)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            7899998743     46678999999999999999987544

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.62  E-value=2.5e-15  Score=121.07  Aligned_cols=120  Identities=17%  Similarity=0.122  Sum_probs=97.9

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      .+++.+|||+|||+|.++..++... . .+|+++|+++.+++.|++++..+++.+++++..+|+.+... .   +.||+|
T Consensus       123 ~~~~~~VLDlgcG~G~~~~~la~~~-~-~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~---~~fD~V  196 (278)
T 2frn_A          123 AKPDELVVDMFAGIGHLSLPIAVYG-K-AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-E---NIADRI  196 (278)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHT-C-CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-C---SCEEEE
T ss_pred             CCCCCEEEEecccCCHHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-c---CCccEE
Confidence            4678999999999999999998873 3 37999999999999999999999988779999999986322 2   789999


Q ss_pred             EEeCCCh-hchHHHHHhcccCCCEEEEEeCC------HHHHHHHHHHHHh-cCc
Q 026506          186 FLDLPQP-WLAIPSAKKMLKQDGILCSFSPC------IEQVQRSCESLRL-NFT  231 (237)
Q Consensus       186 ~~~~~~~-~~~l~~~~~~L~~gG~l~~~~~~------~~~~~~~~~~l~~-~f~  231 (237)
                      +++++.. ..+++.+.+.|+|||.+++....      ....+++.+.+++ +|.
T Consensus       197 i~~~p~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~  250 (278)
T 2frn_A          197 LMGYVVRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYD  250 (278)
T ss_dssp             EECCCSSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCE
T ss_pred             EECCchhHHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCe
Confidence            9988744 46899999999999999976543      2345666666666 554

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.62  E-value=8.8e-15  Score=117.27  Aligned_cols=110  Identities=22%  Similarity=0.279  Sum_probs=94.2

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .++..+.+.++.+|||+|||+|.++..+++..  ..+++++|+++.+++.+++++...++.+++++..+|+.+.+++.  
T Consensus        52 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~--  127 (273)
T 3bus_A           52 EMIALLDVRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED--  127 (273)
T ss_dssp             HHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT--
T ss_pred             HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC--
Confidence            36677788899999999999999999998875  47999999999999999999988887767999999998655554  


Q ss_pred             CCCCCEEEEe-----CCChhchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                       +.||+|++.     .+++..+++++.+.|||||++++..
T Consensus       128 -~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~  166 (273)
T 3bus_A          128 -ASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIAD  166 (273)
T ss_dssp             -TCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             -CCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEE
Confidence             789999864     3466678999999999999998765

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.61  E-value=9.6e-16  Score=130.90  Aligned_cols=114  Identities=25%  Similarity=0.374  Sum_probs=93.5

Q ss_pred             HHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC
Q 026506           97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD  176 (237)
Q Consensus        97 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  176 (237)
                      ...+...+.+.++.+|||+|||+|+.+.+++..+++.++|+++|+++.+++.++++++++|+.  +.+..+|+.+.  +.
T Consensus        90 s~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l--~~  165 (464)
T 3m6w_A           90 AQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRAL--AE  165 (464)
T ss_dssp             THHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHH--HH
T ss_pred             HHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHh--hh
Confidence            334566778899999999999999999999999866689999999999999999999999976  88888887652  11


Q ss_pred             CCCCCCCEEEEeCCCh---------------------------hchHHHHHhcccCCCEEEEEeCC
Q 026506          177 EFSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       177 ~~~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      ...+.||+|++|+|+.                           .++++.+.+.|||||+|+ |++|
T Consensus       166 ~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~Lv-ysTC  230 (464)
T 3m6w_A          166 AFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLV-YSTC  230 (464)
T ss_dssp             HHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEE-EEES
T ss_pred             hccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEE-EEec
Confidence            0126799999998852                           347888999999999998 5444

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.61  E-value=6.9e-15  Score=114.85  Aligned_cols=106  Identities=22%  Similarity=0.239  Sum_probs=84.9

Q ss_pred             cCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCC
Q 026506          104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLAD  183 (237)
Q Consensus       104 ~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D  183 (237)
                      +.+.++.+|||+|||+|.++..++...++..+++++|+++.+++.+++++...  .+ +++..+|+.+........+.||
T Consensus        69 ~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--~~-v~~~~~d~~~~~~~~~~~~~~D  145 (227)
T 1g8a_A           69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RN-IVPILGDATKPEEYRALVPKVD  145 (227)
T ss_dssp             CCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TT-EEEEECCTTCGGGGTTTCCCEE
T ss_pred             cCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--CC-CEEEEccCCCcchhhcccCCce
Confidence            34778999999999999999999998766689999999999999999887654  34 9999999875211011125799


Q ss_pred             EEEEeCCChhc--h-HHHHHhcccCCCEEEEE
Q 026506          184 SIFLDLPQPWL--A-IPSAKKMLKQDGILCSF  212 (237)
Q Consensus       184 ~v~~~~~~~~~--~-l~~~~~~L~~gG~l~~~  212 (237)
                      +|+++.+.++.  . ++++.+.|+|||++++.
T Consensus       146 ~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          146 VIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             EEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEECCCCHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            99998875542  4 89999999999999876

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.61  E-value=3.2e-15  Score=120.78  Aligned_cols=105  Identities=18%  Similarity=0.154  Sum_probs=88.9

Q ss_pred             CCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       105 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      ...++.+|||+|||+|.++..++...+...+++++|+++.+++.+++++...+.  ++++...|+.+..+ .   +.||+
T Consensus        19 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~-~---~~fD~   92 (284)
T 3gu3_A           19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIEL-N---DKYDI   92 (284)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCC-S---SCEEE
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcCc-C---CCeeE
Confidence            567889999999999999999988764457999999999999999999876553  49999999986333 2   68999


Q ss_pred             EEEeC-----CChhchHHHHHhcccCCCEEEEEeCC
Q 026506          185 IFLDL-----PQPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       185 v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      |++..     +++..+++++.+.|+|||.+++..+.
T Consensus        93 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           93 AICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             EEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence            98753     46667999999999999999988877

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.61  E-value=1.4e-15  Score=121.20  Aligned_cols=107  Identities=21%  Similarity=0.211  Sum_probs=88.5

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .++..+...++.+|||+|||+|.++..++...  ..+++++|+++.+++.++++....   .++++..+|+.+.+++.  
T Consensus        46 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~--  118 (266)
T 3ujc_A           46 KILSDIELNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKEFPE--  118 (266)
T ss_dssp             HHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTCCCCT--
T ss_pred             HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccCCCCC--
Confidence            35666678889999999999999999999886  379999999999999999875433   34999999998655554  


Q ss_pred             CCCCCEEEEeC-------CChhchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFLDL-------PQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~~-------~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                       +.||+|++..       +++..+++++.+.|+|||++++..
T Consensus       119 -~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  159 (266)
T 3ujc_A          119 -NNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITD  159 (266)
T ss_dssp             -TCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -CcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEE
Confidence             7899998753       344568999999999999999775

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.61  E-value=4e-15  Score=117.27  Aligned_cols=126  Identities=12%  Similarity=0.101  Sum_probs=98.5

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..++.+|||+|||+|..+..++... +..+|+++|+++.+++.|++++...++.+ +++..+|+.+........+.||+|
T Consensus        68 ~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~V  145 (240)
T 1xdz_A           68 FNQVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQLEN-TTFCHDRAETFGQRKDVRESYDIV  145 (240)
T ss_dssp             GGGCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEESCHHHHTTCTTTTTCEEEE
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEeccHHHhcccccccCCccEE
Confidence            3578899999999999999888753 55799999999999999999999888876 999999987533221112679999


Q ss_pred             EEeC-CChhchHHHHHhcccCCCEEEEEeCC--HHHHHHHHHHHHh-cCccc
Q 026506          186 FLDL-PQPWLAIPSAKKMLKQDGILCSFSPC--IEQVQRSCESLRL-NFTGK  233 (237)
Q Consensus       186 ~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~--~~~~~~~~~~l~~-~f~~v  233 (237)
                      ++.. .....+++.+.+.|+|||+++++...  .+...++.+.++. +|..+
T Consensus       146 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~  197 (240)
T 1xdz_A          146 TARAVARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELE  197 (240)
T ss_dssp             EEECCSCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEE
T ss_pred             EEeccCCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEe
Confidence            9765 44567899999999999999877532  3455667777777 66543

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.61  E-value=2.6e-15  Score=117.80  Aligned_cols=128  Identities=20%  Similarity=0.319  Sum_probs=95.3

Q ss_pred             hcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCCCCCCC
Q 026506          103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGL  181 (237)
Q Consensus       103 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~  181 (237)
                      .+.+.++.+|||+|||+|.++..+++..++..+++++|+++.+++.+.++....  .+ +++..+|+.+.. ++. ..+.
T Consensus        72 ~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--~~-v~~~~~d~~~~~~~~~-~~~~  147 (233)
T 2ipx_A           72 QIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TN-IIPVIEDARHPHKYRM-LIAM  147 (233)
T ss_dssp             CCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--TT-EEEECSCTTCGGGGGG-GCCC
T ss_pred             eecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--CC-eEEEEcccCChhhhcc-cCCc
Confidence            445778999999999999999999998766689999999999888887777654  34 899999987521 111 1267


Q ss_pred             CCEEEEeCCChhc---hHHHHHhcccCCCEEEEEeCCHH---------HHHHHHHHHHh-cCcccc
Q 026506          182 ADSIFLDLPQPWL---AIPSAKKMLKQDGILCSFSPCIE---------QVQRSCESLRL-NFTGKE  234 (237)
Q Consensus       182 ~D~v~~~~~~~~~---~l~~~~~~L~~gG~l~~~~~~~~---------~~~~~~~~l~~-~f~~v~  234 (237)
                      ||+|+++.+.++.   ++.++.+.|||||++++......         ...+.++.+++ ||..++
T Consensus       148 ~D~V~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  213 (233)
T 2ipx_A          148 VDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQE  213 (233)
T ss_dssp             EEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEE
T ss_pred             EEEEEEcCCCccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEE
Confidence            9999999876643   38889999999999997543211         02223566666 787554

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.61  E-value=1.3e-14  Score=120.79  Aligned_cols=126  Identities=24%  Similarity=0.279  Sum_probs=102.9

Q ss_pred             cccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC
Q 026506           94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG  173 (237)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~  173 (237)
                      +.....++..+...++.+|||+|||+|.+++.++...++..+++++|+++.+++.|+++++..++. .+++..+|+.+..
T Consensus       189 ~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~  267 (354)
T 3tma_A          189 PVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLP  267 (354)
T ss_dssp             HHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGG
T ss_pred             HHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCc
Confidence            333445677778889999999999999999999988645688999999999999999999999987 5999999998643


Q ss_pred             CCCCCCCCCCEEEEeCCCh-------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHH
Q 026506          174 FPDEFSGLADSIFLDLPQP-------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSC  223 (237)
Q Consensus       174 ~~~~~~~~~D~v~~~~~~~-------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~  223 (237)
                      .+.   ..||+|+.|+|-.             ..+++.+.+.|+|||+++++.+.....+++.
T Consensus       268 ~~~---~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~~~~~~~  327 (354)
T 3tma_A          268 RFF---PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPALLKRAL  327 (354)
T ss_dssp             GTC---CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHHHHHHHC
T ss_pred             ccc---CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHh
Confidence            333   5689999998721             3578889999999999999998765554443

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.61  E-value=2.8e-15  Score=120.54  Aligned_cols=114  Identities=21%  Similarity=0.235  Sum_probs=92.2

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC-C
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-E  177 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~  177 (237)
                      .+...+++.++.+|||+|||+|+.+.+++..+++..+|+++|+++.+++.++++++..++.+ +++..+|+.+..... .
T Consensus        74 l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~-v~~~~~D~~~~~~~~~~  152 (274)
T 3ajd_A           74 IPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLN-TIIINADMRKYKDYLLK  152 (274)
T ss_dssp             HHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCHHHHHHHHHH
T ss_pred             HHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCc-EEEEeCChHhcchhhhh
Confidence            35566788999999999999999999999987555899999999999999999999988875 999999987522100 0


Q ss_pred             CCCCCCEEEEeCCCh-----------------------hchHHHHHhcccCCCEEEEEe
Q 026506          178 FSGLADSIFLDLPQP-----------------------WLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       178 ~~~~~D~v~~~~~~~-----------------------~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ..+.||+|++|+|..                       ..+++.+.+.|||||++++..
T Consensus       153 ~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~st  211 (274)
T 3ajd_A          153 NEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYST  211 (274)
T ss_dssp             TTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence            016799999997642                       357888999999999998543

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.61  E-value=8.4e-15  Score=113.34  Aligned_cols=117  Identities=26%  Similarity=0.279  Sum_probs=95.3

Q ss_pred             cccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC
Q 026506           94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG  173 (237)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~  173 (237)
                      +.....++..+...++.+|||+|||+|.++..++...++..+++++|+++.+++.+++++...+..+ +++..+|+.. .
T Consensus        63 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~  140 (215)
T 2yxe_A           63 IHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDN-VIVIVGDGTL-G  140 (215)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTT-EEEEESCGGG-C
T ss_pred             HHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEECCccc-C
Confidence            3344457777888899999999999999999999987555799999999999999999998888776 9999999863 3


Q ss_pred             CCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCC
Q 026506          174 FPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       174 ~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      ++.  .+.||+|+++..... ..+.+.+.|+|||++++..+.
T Consensus       141 ~~~--~~~fD~v~~~~~~~~-~~~~~~~~L~pgG~lv~~~~~  179 (215)
T 2yxe_A          141 YEP--LAPYDRIYTTAAGPK-IPEPLIRQLKDGGKLLMPVGR  179 (215)
T ss_dssp             CGG--GCCEEEEEESSBBSS-CCHHHHHTEEEEEEEEEEESS
T ss_pred             CCC--CCCeeEEEECCchHH-HHHHHHHHcCCCcEEEEEECC
Confidence            332  167999998765443 557899999999999977664

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.61  E-value=1.4e-14  Score=118.74  Aligned_cols=109  Identities=16%  Similarity=0.167  Sum_probs=91.3

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .++..+.+.++.+|||+|||+|.++..++...  ..+++++|+++.+++.+++++...++.+++++..+|+.+  ++   
T Consensus        81 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~---  153 (318)
T 2fk8_A           81 LNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED--FA---  153 (318)
T ss_dssp             HHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG--CC---
T ss_pred             HHHHhcCCCCcCEEEEEcccchHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH--CC---
Confidence            35666778899999999999999999999886  359999999999999999999888877679999999865  33   


Q ss_pred             CCCCCEEEEe-----C--CChhchHHHHHhcccCCCEEEEEeCC
Q 026506          179 SGLADSIFLD-----L--PQPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       179 ~~~~D~v~~~-----~--~~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                       +.||+|++.     .  .+...+++++.+.|+|||++++..+.
T Consensus       154 -~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  196 (318)
T 2fk8_A          154 -EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV  196 (318)
T ss_dssp             -CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             -CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence             679999875     3  34457899999999999999976543

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.61  E-value=9e-15  Score=114.06  Aligned_cols=115  Identities=24%  Similarity=0.234  Sum_probs=91.9

Q ss_pred             HHHHHHhcC--CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC----CCcEEEEEcccc
Q 026506           97 ISFVIMYLE--LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV----SSFVTVGVRDIQ  170 (237)
Q Consensus        97 ~~~~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~i~~~~~d~~  170 (237)
                      ...++..+.  +.++.+|||+|||+|..+..+++..++..+++++|+++.+++.+++++...+.    ..++++..+|+.
T Consensus        64 ~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~  143 (226)
T 1i1n_A           64 HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGR  143 (226)
T ss_dssp             HHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGG
T ss_pred             HHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcc
Confidence            334566664  78899999999999999999998876657999999999999999999887653    234999999987


Q ss_pred             CCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCC
Q 026506          171 GQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       171 ~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      ......   +.||+|+++.+... +++.+.+.|||||++++....
T Consensus       144 ~~~~~~---~~fD~i~~~~~~~~-~~~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          144 MGYAEE---APYDAIHVGAAAPV-VPQALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             GCCGGG---CCEEEEEECSBBSS-CCHHHHHTEEEEEEEEEEESC
T ss_pred             cCcccC---CCcCEEEECCchHH-HHHHHHHhcCCCcEEEEEEec
Confidence            422222   67999998876543 779999999999999876543

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.60  E-value=1.7e-14  Score=116.52  Aligned_cols=107  Identities=17%  Similarity=0.169  Sum_probs=89.8

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ++..+.+.++.+|||+|||+|.++..+++..+  .+++++|+++.+++.+++++...+...++++..+|+.+  ++    
T Consensus        56 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~----  127 (287)
T 1kpg_A           56 ALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ--FD----  127 (287)
T ss_dssp             HHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG--CC----
T ss_pred             HHHHcCCCCcCEEEEECCcccHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh--CC----
Confidence            55667788999999999999999999997653  59999999999999999999887876669999999864  33    


Q ss_pred             CCCCEEEEe-----C--CChhchHHHHHhcccCCCEEEEEeC
Q 026506          180 GLADSIFLD-----L--PQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       180 ~~~D~v~~~-----~--~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +.||+|++.     .  .+...+++++.+.|||||++++..+
T Consensus       128 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  169 (287)
T 1kpg_A          128 EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI  169 (287)
T ss_dssp             CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            679999864     2  3456789999999999999987654

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.60  E-value=1.6e-15  Score=129.29  Aligned_cols=115  Identities=32%  Similarity=0.375  Sum_probs=94.9

Q ss_pred             HHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC
Q 026506           97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD  176 (237)
Q Consensus        97 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  176 (237)
                      ...+...+.+.++.+|||+|||+|+.+.+++..+++.++|+++|+++.+++.++++++++|+.+ +.+...|+...  ..
T Consensus        94 s~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~n-v~v~~~Da~~l--~~  170 (456)
T 3m4x_A           94 AMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSN-AIVTNHAPAEL--VP  170 (456)
T ss_dssp             THHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSS-EEEECCCHHHH--HH
T ss_pred             HHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEeCCHHHh--hh
Confidence            3345667788999999999999999999999988666899999999999999999999999877 88999988652  11


Q ss_pred             CCCCCCCEEEEeCCCh---------------------------hchHHHHHhcccCCCEEEEEeCC
Q 026506          177 EFSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       177 ~~~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      ...+.||+|++|+|+.                           .++++.+.+.|||||+|+ |++|
T Consensus       171 ~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~Lv-YsTC  235 (456)
T 3m4x_A          171 HFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLI-YSTC  235 (456)
T ss_dssp             HHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEE-EEES
T ss_pred             hccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEE-EEEe
Confidence            1126799999998842                           156889999999999988 6555

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.60  E-value=1.2e-14  Score=117.26  Aligned_cols=110  Identities=20%  Similarity=0.226  Sum_probs=89.3

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEF  178 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~  178 (237)
                      ++..+... +.+|||+|||+|.++..++..   ..+++++|+++.+++.|++++...++..++++..+|+.+.. ++.  
T Consensus        61 ~l~~~~~~-~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--  134 (285)
T 4htf_A           61 VLAEMGPQ-KLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE--  134 (285)
T ss_dssp             HHHHTCSS-CCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS--
T ss_pred             HHHhcCCC-CCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC--
Confidence            34444433 689999999999999988876   36899999999999999999988887666999999998633 333  


Q ss_pred             CCCCCEEEEe-----CCChhchHHHHHhcccCCCEEEEEeCCH
Q 026506          179 SGLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       179 ~~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                       +.||+|++.     .+++..+++++.+.|||||++++..+..
T Consensus       135 -~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  176 (285)
T 4htf_A          135 -TPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNA  176 (285)
T ss_dssp             -SCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBH
T ss_pred             -CCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCC
Confidence             789999875     3566789999999999999999877654

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.60  E-value=1.1e-14  Score=116.93  Aligned_cols=119  Identities=14%  Similarity=0.126  Sum_probs=98.2

Q ss_pred             cCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCC
Q 026506          104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLAD  183 (237)
Q Consensus       104 ~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D  183 (237)
                      ..+.++.+|||+|||+|.++..++... +..+|+++|+++.+++.|+++++.+++.+ +.+..+|+.+.  +.  .+.||
T Consensus       115 ~~~~~~~~VLDlgcG~G~~s~~la~~~-~~~~V~~vD~s~~av~~a~~n~~~n~l~~-~~~~~~d~~~~--~~--~~~~D  188 (272)
T 3a27_A          115 FISNENEVVVDMFAGIGYFTIPLAKYS-KPKLVYAIEKNPTAYHYLCENIKLNKLNN-VIPILADNRDV--EL--KDVAD  188 (272)
T ss_dssp             TSCCTTCEEEETTCTTTTTHHHHHHHT-CCSEEEEEECCHHHHHHHHHHHHHTTCSS-EEEEESCGGGC--CC--TTCEE
T ss_pred             HhcCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEECChHHc--Cc--cCCce
Confidence            346788999999999999999999885 35799999999999999999999998877 88999999853  22  26799


Q ss_pred             EEEEeCC-ChhchHHHHHhcccCCCEEEEEeCCH-----HHHHHHHHHHHh
Q 026506          184 SIFLDLP-QPWLAIPSAKKMLKQDGILCSFSPCI-----EQVQRSCESLRL  228 (237)
Q Consensus       184 ~v~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~~~-----~~~~~~~~~l~~  228 (237)
                      +|++++| ...+.+..+.+.|+|||++++.....     +...+.++.+.+
T Consensus       189 ~Vi~d~p~~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~  239 (272)
T 3a27_A          189 RVIMGYVHKTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAE  239 (272)
T ss_dssp             EEEECCCSSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHH
T ss_pred             EEEECCcccHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHH
Confidence            9999988 55678999999999999998765433     355666666665

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.59  E-value=4.3e-15  Score=116.53  Aligned_cols=113  Identities=19%  Similarity=0.191  Sum_probs=91.0

Q ss_pred             HHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC
Q 026506           98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE  177 (237)
Q Consensus        98 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  177 (237)
                      ..+...+...++.+|||+|||+|..+..++... +..+++++|+++.+++.|+++++..++.+++++..+|+.+. ++..
T Consensus        61 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~  138 (232)
T 3ntv_A           61 DLIKQLIRMNNVKNILEIGTAIGYSSMQFASIS-DDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQ-FENV  138 (232)
T ss_dssp             HHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTC-TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGC-HHHH
T ss_pred             HHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHH-HHhh
Confidence            334455556678999999999999999998843 46899999999999999999999988876699999999742 2201


Q ss_pred             CCCCCCEEEEeCCC--hhchHHHHHhcccCCCEEEEE
Q 026506          178 FSGLADSIFLDLPQ--PWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       178 ~~~~~D~v~~~~~~--~~~~l~~~~~~L~~gG~l~~~  212 (237)
                      ..+.||+|+++...  ...+++.+.+.|+|||++++.
T Consensus       139 ~~~~fD~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~d  175 (232)
T 3ntv_A          139 NDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVITD  175 (232)
T ss_dssp             TTSCEEEEEEETTSSSHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ccCCccEEEEcCcHHHHHHHHHHHHHhcCCCeEEEEe
Confidence            12689999998753  346889999999999999873

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.59  E-value=9.2e-15  Score=113.57  Aligned_cols=121  Identities=15%  Similarity=0.131  Sum_probs=95.3

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      +.++.+|+|+|||+|.+++.++.. ++..+|+++|+++.+++.|++|++.+++.+++++..+|..+. +...  ..||+|
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~-~~~~--~~~D~I   94 (230)
T 3lec_A           19 VPKGARLLDVGSDHAYLPIFLLQM-GYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSA-FEEA--DNIDTI   94 (230)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHT-TCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG-CCGG--GCCCEE
T ss_pred             CCCCCEEEEECCchHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-cccc--cccCEE
Confidence            567899999999999999998876 456789999999999999999999999988899999999853 3321  369997


Q ss_pred             EE-eCCC--hhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCcc
Q 026506          186 FL-DLPQ--PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTG  232 (237)
Q Consensus       186 ~~-~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~  232 (237)
                      ++ .+..  -...++...+.|+++|+++ ++|.. ....+.++|.+ ||.-
T Consensus        95 viaGmGg~lI~~IL~~~~~~l~~~~~lI-lqp~~-~~~~lr~~L~~~Gf~i  143 (230)
T 3lec_A           95 TICGMGGRLIADILNNDIDKLQHVKTLV-LQPNN-REDDLRKWLAANDFEI  143 (230)
T ss_dssp             EEEEECHHHHHHHHHHTGGGGTTCCEEE-EEESS-CHHHHHHHHHHTTEEE
T ss_pred             EEeCCchHHHHHHHHHHHHHhCcCCEEE-EECCC-ChHHHHHHHHHCCCEE
Confidence            75 4443  2357888888999999888 55543 35666667777 6753

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.59  E-value=5.9e-15  Score=115.21  Aligned_cols=117  Identities=19%  Similarity=0.164  Sum_probs=93.2

Q ss_pred             cccHHHHHHhc--CCCCCCEEEEEccCccHHHHHHHHHhC----CCcEEEEEeCCHHHHHHHHHHHHHcCC----CCcEE
Q 026506           94 IADISFVIMYL--ELVPGCLVLESGTGSGSLTTSLARAVA----PTGHVYTFDFHEQRAASAREDFERTGV----SSFVT  163 (237)
Q Consensus        94 ~~~~~~~~~~~--~~~~~~~vldiG~G~G~~~~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~i~  163 (237)
                      +.....+++.+  .+.++.+|||+|||+|.++..++...+    +..+++++|+++.+++.|++++...+.    ..+++
T Consensus        64 p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~  143 (227)
T 2pbf_A           64 PHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFK  143 (227)
T ss_dssp             HHHHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEE
T ss_pred             hHHHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEE
Confidence            34444466666  578899999999999999999998864    456999999999999999999988772    23499


Q ss_pred             EEEccccCCC----CCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          164 VGVRDIQGQG----FPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       164 ~~~~d~~~~~----~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +..+|+.+..    ...   +.||+|+++...+. +++.+.+.|+|||++++..+
T Consensus       144 ~~~~d~~~~~~~~~~~~---~~fD~I~~~~~~~~-~~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          144 IIHKNIYQVNEEEKKEL---GLFDAIHVGASASE-LPEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             EEECCGGGCCHHHHHHH---CCEEEEEECSBBSS-CCHHHHHHEEEEEEEEEEEE
T ss_pred             EEECChHhcccccCccC---CCcCEEEECCchHH-HHHHHHHhcCCCcEEEEEEc
Confidence            9999987522    222   67999998876554 78999999999999987765

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.58  E-value=1.3e-14  Score=110.16  Aligned_cols=102  Identities=17%  Similarity=0.163  Sum_probs=84.0

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC--CCCCCCCCCCE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--FPDEFSGLADS  184 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~~~D~  184 (237)
                      .++.+|||+|||+|.++..++..  +..+|+++|+++.+++.|+++++.+++.+ +++..+|+.+..  ++.   +.||+
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~---~~fD~  116 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSR--GAASVLFVESDQRSAAVIARNIEALGLSG-ATLRRGAVAAVVAAGTT---SPVDL  116 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEECCHHHHHHHHHHHHHHTCSC-EEEEESCHHHHHHHCCS---SCCSE
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHC--CCCeEEEEECCHHHHHHHHHHHHHcCCCc-eEEEEccHHHHHhhccC---CCccE
Confidence            57889999999999999877764  45689999999999999999999888844 999999987521  223   68999


Q ss_pred             EEEeCCChh------chHHHHHh--cccCCCEEEEEeC
Q 026506          185 IFLDLPQPW------LAIPSAKK--MLKQDGILCSFSP  214 (237)
Q Consensus       185 v~~~~~~~~------~~l~~~~~--~L~~gG~l~~~~~  214 (237)
                      |+++++-..      ..++.+.+  .|+|||.+++..+
T Consensus       117 i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~  154 (189)
T 3p9n_A          117 VLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERA  154 (189)
T ss_dssp             EEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred             EEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEec
Confidence            999876432      46788888  9999999997764

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.58  E-value=8.7e-16  Score=118.49  Aligned_cols=132  Identities=21%  Similarity=0.157  Sum_probs=82.7

Q ss_pred             HHHhcCC-CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC--
Q 026506          100 VIMYLEL-VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD--  176 (237)
Q Consensus       100 ~~~~~~~-~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~--  176 (237)
                      ++..+.. .++.+|||+|||+|.++..++... +..+++++|+++.+++.+++++...+.  ++++..+|+.+ .++.  
T Consensus        21 ~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~-~~~~~~   96 (215)
T 4dzr_A           21 AIRFLKRMPSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGIE-WLIERA   96 (215)
T ss_dssp             HHHHHTTCCTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC---------------------CCHHHHHH-HHHHHH
T ss_pred             HHHHhhhcCCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchHh-hhhhhh
Confidence            4444444 778999999999999999999884 557999999999999999999887776  38888888874 2221  


Q ss_pred             CCCCCCCEEEEeCCCh-------------------------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHH
Q 026506          177 EFSGLADSIFLDLPQP-------------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCES  225 (237)
Q Consensus       177 ~~~~~~D~v~~~~~~~-------------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~  225 (237)
                      ...+.||+|+.++|-.                               ..+++.+.+.|+|||+++++.....+.+.+.+.
T Consensus        97 ~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  176 (215)
T 4dzr_A           97 ERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARL  176 (215)
T ss_dssp             HTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHH
T ss_pred             hccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHH
Confidence            0116799999976521                               456788899999999955455445556777777


Q ss_pred             HH--h-cCccccc
Q 026506          226 LR--L-NFTGKES  235 (237)
Q Consensus       226 l~--~-~f~~v~~  235 (237)
                      ++  + +|..+++
T Consensus       177 l~~~~~gf~~~~~  189 (215)
T 4dzr_A          177 FAPWRERGFRVRK  189 (215)
T ss_dssp             TGGGGGGTEECCE
T ss_pred             HHHhhcCCceEEE
Confidence            77  6 7876653

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.58  E-value=1.5e-14  Score=118.68  Aligned_cols=115  Identities=21%  Similarity=0.212  Sum_probs=94.3

Q ss_pred             ccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCC
Q 026506           95 ADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF  174 (237)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~  174 (237)
                      .....++..+.+.++.+|||+|||+|.++..+++......+|+++|+++++++.|++++...++.+ +++..+|+.+...
T Consensus        62 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~-v~~~~~d~~~~~~  140 (317)
T 1dl5_A           62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYYGVP  140 (317)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCCG
T ss_pred             HHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-eEEEECChhhccc
Confidence            334457778888999999999999999999999886434789999999999999999999888877 9999999875222


Q ss_pred             CCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          175 PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       175 ~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +.   +.||+|+++.+... +.+.+.+.|||||++++...
T Consensus       141 ~~---~~fD~Iv~~~~~~~-~~~~~~~~LkpgG~lvi~~~  176 (317)
T 1dl5_A          141 EF---SPYDVIFVTVGVDE-VPETWFTQLKEGGRVIVPIN  176 (317)
T ss_dssp             GG---CCEEEEEECSBBSC-CCHHHHHHEEEEEEEEEEBC
T ss_pred             cC---CCeEEEEEcCCHHH-HHHHHHHhcCCCcEEEEEEC
Confidence            22   67999998765443 45788999999999987654

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.58  E-value=2.2e-14  Score=120.13  Aligned_cols=120  Identities=18%  Similarity=0.180  Sum_probs=96.6

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC--cEEEEEccccCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS--FVTVGVRDIQGQGFPD  176 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~--~i~~~~~d~~~~~~~~  176 (237)
                      .++..+...++.+|||+|||+|.++..++... +..+|+++|+++.+++.+++++..+++.+  ++++...|+.+ .++.
T Consensus       213 ~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~  290 (375)
T 4dcm_A          213 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEP  290 (375)
T ss_dssp             HHHHTCCCSCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCT
T ss_pred             HHHHhCcccCCCeEEEEeCcchHHHHHHHHHC-CCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCC
Confidence            46777777788999999999999999999884 56899999999999999999999888653  47889999984 4444


Q ss_pred             CCCCCCCEEEEeCCCh----------hchHHHHHhcccCCCEEEEEeCCHHHHHHHH
Q 026506          177 EFSGLADSIFLDLPQP----------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSC  223 (237)
Q Consensus       177 ~~~~~~D~v~~~~~~~----------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~  223 (237)
                         +.||+|++++|-.          +.+++.+.+.|+|||+++++..........+
T Consensus       291 ---~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l  344 (375)
T 4dcm_A          291 ---FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKL  344 (375)
T ss_dssp             ---TCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHH
T ss_pred             ---CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHH
Confidence               6899999987632          2468999999999999998765443333333

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.58  E-value=7.8e-15  Score=126.27  Aligned_cols=121  Identities=26%  Similarity=0.347  Sum_probs=96.2

Q ss_pred             cccccccHHH--HHHhcCCC--CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 026506           90 QILYIADISF--VIMYLELV--PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG  165 (237)
Q Consensus        90 ~~~~~~~~~~--~~~~~~~~--~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~  165 (237)
                      ..++.++.+.  ....+.+.  ++.+|||+|||+|+.+.+++..+++.+.|+++|+++.+++.+++++++.|+.+ +.+.
T Consensus        95 G~~~~Qd~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~n-v~~~  173 (479)
T 2frx_A           95 GLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISN-VALT  173 (479)
T ss_dssp             TSEEECCHHHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCS-EEEE
T ss_pred             cEEEEECHHHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEE
Confidence            3445555443  34566777  99999999999999999999998666899999999999999999999999876 9999


Q ss_pred             EccccCCCC-CCCCCCCCCEEEEeCCCh---------------------------hchHHHHHhcccCCCEEEEEeCC
Q 026506          166 VRDIQGQGF-PDEFSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       166 ~~d~~~~~~-~~~~~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      .+|+..... ..   +.||+|++|+|+.                           ..+++.+.+.|||||+|+ |++|
T Consensus       174 ~~D~~~~~~~~~---~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~Lv-ysTc  247 (479)
T 2frx_A          174 HFDGRVFGAAVP---EMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLV-YSTC  247 (479)
T ss_dssp             CCCSTTHHHHST---TCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEE-EEES
T ss_pred             eCCHHHhhhhcc---ccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEE-Eecc
Confidence            999875221 22   6799999998742                           136788899999999998 5444

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.58  E-value=1.5e-14  Score=113.31  Aligned_cols=106  Identities=19%  Similarity=0.175  Sum_probs=85.3

Q ss_pred             HHHhcC-CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          100 VIMYLE-LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       100 ~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      ++..+. ..++.+|||+|||+|.++..++... +..+++++|+++.+++.+++++...+   ++++..+|+.+..++   
T Consensus        35 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~---  107 (234)
T 3dtn_A           35 SVSIASVDTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDFE---  107 (234)
T ss_dssp             HHHTCCCSCSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCCC---
T ss_pred             HHHHhhcCCCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCCC---
Confidence            445544 5678999999999999999999885 55799999999999999999865444   499999999764333   


Q ss_pred             CCCCCEEEEeCC-----Chh--chHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFLDLP-----QPW--LAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~~~-----~~~--~~l~~~~~~L~~gG~l~~~~  213 (237)
                       +.||+|++...     ++.  .+++++.+.|+|||++++..
T Consensus       108 -~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  148 (234)
T 3dtn_A          108 -EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINAD  148 (234)
T ss_dssp             -SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence             67999987542     222  48999999999999999765

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.57  E-value=1.3e-14  Score=112.45  Aligned_cols=111  Identities=13%  Similarity=0.009  Sum_probs=87.3

Q ss_pred             HHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC----cEEEEEccccCCC
Q 026506           98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS----FVTVGVRDIQGQG  173 (237)
Q Consensus        98 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~----~i~~~~~d~~~~~  173 (237)
                      ..+...+...++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++...++..    ++++..+|+....
T Consensus        19 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~   97 (217)
T 3jwh_A           19 NGVVAALKQSNARRVIDLGCGQGNLLKILLKDS-FFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQD   97 (217)
T ss_dssp             HHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCT-TCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCC
T ss_pred             HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhC-CCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccc
Confidence            345566666778999999999999999988763 44799999999999999999987776653    5999999986433


Q ss_pred             CCCCCCCCCCEEEEeC-----CCh--hchHHHHHhcccCCCEEEEE
Q 026506          174 FPDEFSGLADSIFLDL-----PQP--WLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       174 ~~~~~~~~~D~v~~~~-----~~~--~~~l~~~~~~L~~gG~l~~~  212 (237)
                      .+.   +.||+|++..     +.+  ..+++++.+.|||||.+++.
T Consensus        98 ~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~  140 (217)
T 3jwh_A           98 KRF---HGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTT  140 (217)
T ss_dssp             GGG---CSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred             ccC---CCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEc
Confidence            333   6899998743     322  46899999999999966643

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.57  E-value=2.7e-15  Score=118.08  Aligned_cols=122  Identities=20%  Similarity=0.141  Sum_probs=90.4

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC--CCCCCCCCCCCC
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLAD  183 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~~~~D  183 (237)
                      ..+|.+|||||||+|..+..+++.. + .+++++|+++.+++.|+++.+..+  ..+.+..+|+..  ..++.   +.||
T Consensus        58 ~~~G~rVLdiG~G~G~~~~~~~~~~-~-~~v~~id~~~~~~~~a~~~~~~~~--~~~~~~~~~a~~~~~~~~~---~~FD  130 (236)
T 3orh_A           58 SSKGGRVLEVGFGMAIAASKVQEAP-I-DEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPD---GHFD  130 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHTTSC-E-EEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCT---TCEE
T ss_pred             ccCCCeEEEECCCccHHHHHHHHhC-C-cEEEEEeCCHHHHHHHHHHHhhCC--CceEEEeehHHhhcccccc---cCCc
Confidence            4678999999999999998887652 3 689999999999999999887665  347888888754  23444   7899


Q ss_pred             EEEEeCC----------ChhchHHHHHhcccCCCEEEEEeCCH--------------HHHHHHHHHHHh-cCcccc
Q 026506          184 SIFLDLP----------QPWLAIPSAKKMLKQDGILCSFSPCI--------------EQVQRSCESLRL-NFTGKE  234 (237)
Q Consensus       184 ~v~~~~~----------~~~~~l~~~~~~L~~gG~l~~~~~~~--------------~~~~~~~~~l~~-~f~~v~  234 (237)
                      .|+.|..          +...+++++.++|||||+++++....              ...+.....|.+ ||..+.
T Consensus       131 ~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~eaGF~~~~  206 (236)
T 3orh_A          131 GILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRREN  206 (236)
T ss_dssp             EEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHHTCCGGG
T ss_pred             eEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEecCCchhhhhhhhhhhhhhhHHHHHHHHHHcCCeEEE
Confidence            9987653          22357899999999999998654211              112344556667 787544

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.57  E-value=4.4e-15  Score=118.09  Aligned_cols=120  Identities=23%  Similarity=0.250  Sum_probs=99.2

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..++.+|||+|||+|.++..+++. +  .+++++|+++.+++.+++++..+++.  +++..+|+.+ .++.   +.||+|
T Consensus       118 ~~~~~~VLDiGcG~G~l~~~la~~-g--~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~-~~~~---~~fD~V  188 (254)
T 2nxc_A          118 LRPGDKVLDLGTGSGVLAIAAEKL-G--GKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEA-ALPF---GPFDLL  188 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHH-HGGG---CCEEEE
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHh-C--CeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhh-cCcC---CCCCEE
Confidence            567899999999999999887764 3  39999999999999999999888765  7888888864 2333   679999


Q ss_pred             EEeCCCh--hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCcccc
Q 026506          186 FLDLPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGKE  234 (237)
Q Consensus       186 ~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~  234 (237)
                      +.+....  ..+++.+.+.|+|||++++......+.+.+.+.+++ ||..++
T Consensus       189 v~n~~~~~~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~  240 (254)
T 2nxc_A          189 VANLYAELHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLE  240 (254)
T ss_dssp             EEECCHHHHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEE
T ss_pred             EECCcHHHHHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEE
Confidence            9987533  357899999999999999887777788888888888 787654

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.57  E-value=2.4e-14  Score=110.66  Aligned_cols=105  Identities=21%  Similarity=0.240  Sum_probs=80.4

Q ss_pred             cCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCCCCCCCC
Q 026506          104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLA  182 (237)
Q Consensus       104 ~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~~  182 (237)
                      +.+.++.+|||+|||+|.++..++...+ .++|+++|+++.+++.+.+.....  .+ +.+..+|+.... +.. ..+.|
T Consensus        53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~--~~-v~~~~~d~~~~~~~~~-~~~~f  127 (210)
T 1nt2_A           53 LKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER--NN-IIPLLFDASKPWKYSG-IVEKV  127 (210)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC--SS-EEEECSCTTCGGGTTT-TCCCE
T ss_pred             cCCCCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC--CC-eEEEEcCCCCchhhcc-cccce
Confidence            4567899999999999999999998875 579999999999887766655433  24 888888876421 011 11679


Q ss_pred             CEEEEeCCChhc---hHHHHHhcccCCCEEEEEe
Q 026506          183 DSIFLDLPQPWL---AIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       183 D~v~~~~~~~~~---~l~~~~~~L~~gG~l~~~~  213 (237)
                      |+|+++...+..   +++++.+.|||||++++..
T Consensus       128 D~V~~~~~~~~~~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          128 DLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEEeccChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence            999998765532   3899999999999999774

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.57  E-value=2e-15  Score=117.69  Aligned_cols=116  Identities=20%  Similarity=0.287  Sum_probs=92.1

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC--CCCC-
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPD-  176 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~-  176 (237)
                      +...+...++.+|||+|||+|..+..++..+++..+++++|+++.+++.|++++...++.+++++..+|+.+.  .+.. 
T Consensus        56 l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  135 (225)
T 3tr6_A           56 LALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHA  135 (225)
T ss_dssp             HHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTT
T ss_pred             HHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhc
Confidence            3334445678899999999999999999887546899999999999999999999989887799999998641  1110 


Q ss_pred             CCCCCCCEEEEeCCC--hhchHHHHHhcccCCCEEEEEeCC
Q 026506          177 EFSGLADSIFLDLPQ--PWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       177 ~~~~~~D~v~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      ...+.||+|+++.+.  ...+++.+.+.|+|||++++....
T Consensus       136 ~~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~  176 (225)
T 3tr6_A          136 GQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVL  176 (225)
T ss_dssp             TCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             cCCCCccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            001579999988763  456899999999999999976543

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.57  E-value=7.6e-15  Score=116.22  Aligned_cols=110  Identities=16%  Similarity=0.163  Sum_probs=89.1

Q ss_pred             hcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC--CCCCC--C
Q 026506          103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDE--F  178 (237)
Q Consensus       103 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--~  178 (237)
                      .+...++.+|||+|||+|..+..++..+++..+++++|+++.+++.|+++++..++.+++++..+|+.+.  .+...  .
T Consensus        74 l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~  153 (247)
T 1sui_A           74 LLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKN  153 (247)
T ss_dssp             HHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGG
T ss_pred             HHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCC
Confidence            3444567899999999999999999987546899999999999999999999888876799999998641  11000  0


Q ss_pred             CCCCCEEEEeCC--ChhchHHHHHhcccCCCEEEEE
Q 026506          179 SGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       179 ~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                      .+.||+||++..  ....+++.+.+.|+|||++++-
T Consensus       154 ~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d  189 (247)
T 1sui_A          154 HGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYD  189 (247)
T ss_dssp             TTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             CCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEe
Confidence            167999999864  3457899999999999999864

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.56  E-value=3.9e-14  Score=110.23  Aligned_cols=102  Identities=21%  Similarity=0.155  Sum_probs=83.9

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      .++.+|||+|||+|.++..++...   .+++++|+++.+++.++++....+  .++++..+|+.+..++.   +.||+|+
T Consensus        37 ~~~~~vLDlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~---~~~D~v~  108 (227)
T 1ve3_A           37 KKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSFED---KTFDYVI  108 (227)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCSCT---TCEEEEE
T ss_pred             CCCCeEEEEeccCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCCCCC---CcEEEEE
Confidence            457899999999999998888763   389999999999999999988766  34899999987644444   6899999


Q ss_pred             EeCC-------ChhchHHHHHhcccCCCEEEEEeCCH
Q 026506          187 LDLP-------QPWLAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       187 ~~~~-------~~~~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                      ++.+       +...+++++.+.|+|||++++..+..
T Consensus       109 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  145 (227)
T 1ve3_A          109 FIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDL  145 (227)
T ss_dssp             EESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             EcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecCh
Confidence            8755       23468999999999999999887653

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.56  E-value=3.4e-14  Score=111.25  Aligned_cols=121  Identities=12%  Similarity=0.065  Sum_probs=94.7

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      +.++.+|||+|||+|.+++.++.. ++..+|+++|+++.+++.|++|++.+++.+++++..+|..+ .+...  ..||+|
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~-~~~~~--~~~D~I   94 (244)
T 3gnl_A           19 ITKNERIADIGSDHAYLPCFAVKN-QTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLA-VIEKK--DAIDTI   94 (244)
T ss_dssp             CCSSEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG-GCCGG--GCCCEE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhh-ccCcc--ccccEE
Confidence            567899999999999999998876 45578999999999999999999999998889999999985 33321  359998


Q ss_pred             EE-eCCC--hhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCcc
Q 026506          186 FL-DLPQ--PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTG  232 (237)
Q Consensus       186 ~~-~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~  232 (237)
                      ++ .+..  -...++...+.|++++++++- |.. ....+.+.|.+ ||.-
T Consensus        95 viagmGg~lI~~IL~~~~~~L~~~~~lIlq-~~~-~~~~lr~~L~~~Gf~i  143 (244)
T 3gnl_A           95 VIAGMGGTLIRTILEEGAAKLAGVTKLILQ-PNI-AAWQLREWSEQNNWLI  143 (244)
T ss_dssp             EEEEECHHHHHHHHHHTGGGGTTCCEEEEE-ESS-CHHHHHHHHHHHTEEE
T ss_pred             EEeCCchHHHHHHHHHHHHHhCCCCEEEEE-cCC-ChHHHHHHHHHCCCEE
Confidence            75 3432  235788889999999998844 433 35666667777 6763

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.56  E-value=4.7e-14  Score=120.93  Aligned_cols=111  Identities=26%  Similarity=0.401  Sum_probs=92.5

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC--CCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--FPD  176 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~  176 (237)
                      .+...+++.++.+|||+|||+|+.+.+++..+++.++++++|+++.+++.++++++..++.+ +.+..+|+....  ++.
T Consensus       250 l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~-v~~~~~D~~~~~~~~~~  328 (450)
T 2yxl_A          250 VASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKI-VKPLVKDARKAPEIIGE  328 (450)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCS-EEEECSCTTCCSSSSCS
T ss_pred             HHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEEEcChhhcchhhcc
Confidence            34566788999999999999999999999987555799999999999999999999999876 999999987532  222


Q ss_pred             CCCCCCCEEEEeCCCh---------------------------hchHHHHHhcccCCCEEEEEe
Q 026506          177 EFSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       177 ~~~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~gG~l~~~~  213 (237)
                         +.||+|++|+|+.                           ..+++.+.+.|||||++++..
T Consensus       329 ---~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~t  389 (450)
T 2yxl_A          329 ---EVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTT  389 (450)
T ss_dssp             ---SCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ---CCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence               5799999987752                           246889999999999998543

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.56  E-value=2.7e-14  Score=112.11  Aligned_cols=115  Identities=28%  Similarity=0.336  Sum_probs=94.2

Q ss_pred             cccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC
Q 026506           94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG  173 (237)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~  173 (237)
                      +.....++..++..++.+|||+|||+|.++..+++..+  .+++++|+++.+++.|++++...++.+ +++..+|+. ..
T Consensus        77 ~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~-~~  152 (235)
T 1jg1_A           77 PHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKN-VHVILGDGS-KG  152 (235)
T ss_dssp             HHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGG-GC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEECCcc-cC
Confidence            34445577778888999999999999999999998863  789999999999999999999888877 999999974 44


Q ss_pred             CCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCC
Q 026506          174 FPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       174 ~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      ++..  ..||+|+++..... ..+.+.+.|+|||++++..+.
T Consensus       153 ~~~~--~~fD~Ii~~~~~~~-~~~~~~~~L~pgG~lvi~~~~  191 (235)
T 1jg1_A          153 FPPK--APYDVIIVTAGAPK-IPEPLIEQLKIGGKLIIPVGS  191 (235)
T ss_dssp             CGGG--CCEEEEEECSBBSS-CCHHHHHTEEEEEEEEEEECS
T ss_pred             CCCC--CCccEEEECCcHHH-HHHHHHHhcCCCcEEEEEEec
Confidence            4431  45999998765433 567899999999999977764

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.56  E-value=1.7e-14  Score=115.52  Aligned_cols=102  Identities=22%  Similarity=0.246  Sum_probs=88.4

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      .++|++|||+|||+|.+++.++..  +..+|+++|+|+.+++.+++|++.+++.+++++..+|..+  +...  +.||.|
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~--g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~--~~~~--~~~D~V  196 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRD--FPGE--NIADRI  196 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHH--TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTT--CCCC--SCEEEE
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHH--hccc--cCCCEE
Confidence            478999999999999999988876  3478999999999999999999999999889999999875  3321  679999


Q ss_pred             EEeCC-ChhchHHHHHhcccCCCEEEEEe
Q 026506          186 FLDLP-QPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       186 ~~~~~-~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +++.| ...+++..+.+.|++||.+.++.
T Consensus       197 i~~~p~~~~~~l~~a~~~lk~gG~ih~~~  225 (278)
T 3k6r_A          197 LMGYVVRTHEFIPKALSIAKDGAIIHYHN  225 (278)
T ss_dssp             EECCCSSGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             EECCCCcHHHHHHHHHHHcCCCCEEEEEe
Confidence            99865 44578999999999999998764

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.56  E-value=4.4e-15  Score=121.13  Aligned_cols=105  Identities=18%  Similarity=0.131  Sum_probs=87.0

Q ss_pred             CCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       105 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      .+.++.+|||+|||+|..+..++....+..+++++|+++.+++.+++++...+..+++++..+|+.+..++    +.||+
T Consensus       115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~~fD~  190 (305)
T 3ocj_A          115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR----EGYDL  190 (305)
T ss_dssp             HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC----SCEEE
T ss_pred             hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc----CCeEE
Confidence            46788999999999999998886333466899999999999999999998888877799999999864332    67999


Q ss_pred             EEEeC-----CChhc---hHHHHHhcccCCCEEEEEe
Q 026506          185 IFLDL-----PQPWL---AIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       185 v~~~~-----~~~~~---~l~~~~~~L~~gG~l~~~~  213 (237)
                      |+++.     +++..   +++++.+.|+|||++++..
T Consensus       191 v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  227 (305)
T 3ocj_A          191 LTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSF  227 (305)
T ss_dssp             EECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            98754     33333   6999999999999999765

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.56  E-value=9e-15  Score=109.27  Aligned_cols=110  Identities=15%  Similarity=0.142  Sum_probs=88.7

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      .++.+|||+|||+|.++..+++.   . +++++|+++.+++.          .+++++..+|+.+ .++.   +.||+|+
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~---~-~v~gvD~s~~~~~~----------~~~~~~~~~d~~~-~~~~---~~fD~i~   83 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKR---N-TVVSTDLNIRALES----------HRGGNLVRADLLC-SINQ---ESVDVVV   83 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTT---S-EEEEEESCHHHHHT----------CSSSCEEECSTTT-TBCG---GGCSEEE
T ss_pred             CCCCeEEEeccCccHHHHHHHhc---C-cEEEEECCHHHHhc----------ccCCeEEECChhh-hccc---CCCCEEE
Confidence            56789999999999999888876   2 99999999999887          2337889999974 4444   6899999


Q ss_pred             EeCCCh--------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCccccc
Q 026506          187 LDLPQP--------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGKES  235 (237)
Q Consensus       187 ~~~~~~--------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~~  235 (237)
                      .+++-.              ...++++.+.+ |||++++..+...+.+++.+.+++ +|..+++
T Consensus        84 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~  146 (170)
T 3q87_B           84 FNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRIL  146 (170)
T ss_dssp             ECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEE
T ss_pred             ECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEE
Confidence            987633              35778888888 999999888777778888888888 7876543

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.56  E-value=1.8e-15  Score=119.42  Aligned_cols=112  Identities=20%  Similarity=0.181  Sum_probs=90.7

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC--
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE--  177 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~--  177 (237)
                      +...+...++.+|||+|||+|..+..++..+++.++|+++|+++++++.|+++++..++.+++++..+|+.+. ++..  
T Consensus        52 l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~-l~~~~~  130 (242)
T 3r3h_A           52 MQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDT-LHSLLN  130 (242)
T ss_dssp             HHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHH-HHHHHH
T ss_pred             HHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH-HHHHhh
Confidence            3334445677899999999999999999987556899999999999999999999999876799999998641 1110  


Q ss_pred             --CCCCCCEEEEeCCC--hhchHHHHHhcccCCCEEEEE
Q 026506          178 --FSGLADSIFLDLPQ--PWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       178 --~~~~~D~v~~~~~~--~~~~l~~~~~~L~~gG~l~~~  212 (237)
                        ..+.||+|+++...  ...+++.+.+.|+|||++++.
T Consensus       131 ~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d  169 (242)
T 3r3h_A          131 EGGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAID  169 (242)
T ss_dssp             HHCSSCEEEEEEESCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccCCCCEeEEEEcCChHHhHHHHHHHHHhcCCCeEEEEE
Confidence              01679999998763  335799999999999999974

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.56  E-value=1.4e-14  Score=117.64  Aligned_cols=124  Identities=15%  Similarity=0.112  Sum_probs=94.5

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH--cCC-CCcEEEEEccccCC-CCCCCCCCCCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER--TGV-SSFVTVGVRDIQGQ-GFPDEFSGLAD  183 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~--~~~-~~~i~~~~~d~~~~-~~~~~~~~~~D  183 (237)
                      .+.+|||+|||+|.++..+++.. +..+++++|+++.+++.|++++..  .+. ..++++..+|+.+. ....   +.||
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~---~~fD  165 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFK---NEFD  165 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCS---SCEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCC---CCce
Confidence            45899999999999999988764 457999999999999999998754  222 24599999998641 1122   6799


Q ss_pred             EEEEeCCCh----------hchHHHHHhcccCCCEEEEEeCC----HHHHHHHHHHHHhcCccccc
Q 026506          184 SIFLDLPQP----------WLAIPSAKKMLKQDGILCSFSPC----IEQVQRSCESLRLNFTGKES  235 (237)
Q Consensus       184 ~v~~~~~~~----------~~~l~~~~~~L~~gG~l~~~~~~----~~~~~~~~~~l~~~f~~v~~  235 (237)
                      +|++|.+++          .++++.+.+.|+|||++++...+    ......+.+.+++.|..++.
T Consensus       166 ~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~  231 (296)
T 1inl_A          166 VIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRV  231 (296)
T ss_dssp             EEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEE
T ss_pred             EEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceEE
Confidence            999988665          46789999999999999987533    35567777777777876654

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.55  E-value=4.6e-14  Score=110.98  Aligned_cols=106  Identities=18%  Similarity=0.156  Sum_probs=85.6

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      +...+...++.+|||+|||+|.++..++..  +..+++++|+++.+++.++++...    .++++..+|+.+..++.   
T Consensus        35 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~---  105 (243)
T 3bkw_A           35 LRAMLPEVGGLRIVDLGCGFGWFCRWAHEH--GASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLHLPQ---  105 (243)
T ss_dssp             HHHHSCCCTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCCCCT---
T ss_pred             HHHhccccCCCEEEEEcCcCCHHHHHHHHC--CCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhccCCC---
Confidence            566677778899999999999999888876  224899999999999999986432    24899999998644444   


Q ss_pred             CCCCEEEEeC-----CChhchHHHHHhcccCCCEEEEEeC
Q 026506          180 GLADSIFLDL-----PQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       180 ~~~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +.||+|++..     ++...+++++.+.|+|||++++..+
T Consensus       106 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  145 (243)
T 3bkw_A          106 DSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTE  145 (243)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeC
Confidence            7899998743     4556789999999999999997654

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.55  E-value=1.5e-14  Score=117.92  Aligned_cols=128  Identities=20%  Similarity=0.229  Sum_probs=97.4

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH---cCCCCcEEEEEccccCCCCCCCCCCCC
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER---TGVSSFVTVGVRDIQGQGFPDEFSGLA  182 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~---~~~~~~i~~~~~d~~~~~~~~~~~~~~  182 (237)
                      ..++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++..   .....++++..+|+.+.... ...+.|
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-~~~~~f  170 (304)
T 3bwc_A           93 HPKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQ-TPDNTY  170 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHS-SCTTCE
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHh-ccCCce
Confidence            3567899999999999999988763 457999999999999999998642   11234599999998752111 012689


Q ss_pred             CEEEEeCCCh---------hchHHHHHhcccCCCEEEEEeCCH----HHHHHHHHHHHh-cCccccc
Q 026506          183 DSIFLDLPQP---------WLAIPSAKKMLKQDGILCSFSPCI----EQVQRSCESLRL-NFTGKES  235 (237)
Q Consensus       183 D~v~~~~~~~---------~~~l~~~~~~L~~gG~l~~~~~~~----~~~~~~~~~l~~-~f~~v~~  235 (237)
                      |+|++|.+.+         .++++.+.+.|+|||++++.....    ...+.+.+.+++ ||..+++
T Consensus       171 DvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~  237 (304)
T 3bwc_A          171 DVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQY  237 (304)
T ss_dssp             EEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             eEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEE
Confidence            9999987543         367999999999999999876542    467888888888 7987764

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.55  E-value=3.3e-14  Score=115.13  Aligned_cols=109  Identities=21%  Similarity=0.168  Sum_probs=88.5

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      +.++.+|||+|||+|.++..++..  +..+++++|+++.+++.|+++....+...++.+..+|+.+..++.  .+.||+|
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~fD~v  137 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDL--GKEFDVI  137 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCC--SSCEEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCC--CCCcCEE
Confidence            467899999999999998887775  346999999999999999999887776556999999998654421  2789999


Q ss_pred             EEeCC---------ChhchHHHHHhcccCCCEEEEEeCCHHH
Q 026506          186 FLDLP---------QPWLAIPSAKKMLKQDGILCSFSPCIEQ  218 (237)
Q Consensus       186 ~~~~~---------~~~~~l~~~~~~L~~gG~l~~~~~~~~~  218 (237)
                      ++...         ....+++++.+.|+|||++++..+....
T Consensus       138 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  179 (298)
T 1ri5_A          138 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDV  179 (298)
T ss_dssp             EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHH
T ss_pred             EECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHH
Confidence            87533         2246899999999999999988877643

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.55  E-value=1.9e-14  Score=111.67  Aligned_cols=109  Identities=12%  Similarity=0.062  Sum_probs=85.9

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC----cEEEEEccccCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS----FVTVGVRDIQGQGF  174 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~----~i~~~~~d~~~~~~  174 (237)
                      .+...+...++.+|||+|||+|.++..++... +..+++++|+++.+++.+++++...++..    ++++..+|+.....
T Consensus        20 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~   98 (219)
T 3jwg_A           20 TVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDK   98 (219)
T ss_dssp             HHHHHHHHTTCCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCG
T ss_pred             HHHHHHhhcCCCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccccc
Confidence            35555555678899999999999999888763 44799999999999999999987766543    59999999865433


Q ss_pred             CCCCCCCCCEEEEeC-----CCh--hchHHHHHhcccCCCEEEE
Q 026506          175 PDEFSGLADSIFLDL-----PQP--WLAIPSAKKMLKQDGILCS  211 (237)
Q Consensus       175 ~~~~~~~~D~v~~~~-----~~~--~~~l~~~~~~L~~gG~l~~  211 (237)
                      +.   +.||+|++..     +.+  ..+++++.+.|||||.++.
T Consensus        99 ~~---~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~  139 (219)
T 3jwg_A           99 RF---SGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVS  139 (219)
T ss_dssp             GG---TTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEE
T ss_pred             cc---CCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEE
Confidence            33   6899998643     333  4689999999999996654

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.55  E-value=5.9e-15  Score=115.99  Aligned_cols=120  Identities=20%  Similarity=0.164  Sum_probs=89.3

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC--CCCCCCCCCCC
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDEFSGLAD  183 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~~D  183 (237)
                      ..++.+|||+|||+|.++..++..  +..+++++|+++.+++.|+++....+  .++++..+|+.+.  +++.   +.||
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~---~~fD  130 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEA--PIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPD---GHFD  130 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTS--CEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCT---TCEE
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhc--CCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhcccCC---CceE
Confidence            567889999999999999888653  23589999999999999999877655  4489999998763  4554   7899


Q ss_pred             EEEEe-----CCChh-----chHHHHHhcccCCCEEEEEeCCHHH--------------HHHHHHHHHh-cCcc
Q 026506          184 SIFLD-----LPQPW-----LAIPSAKKMLKQDGILCSFSPCIEQ--------------VQRSCESLRL-NFTG  232 (237)
Q Consensus       184 ~v~~~-----~~~~~-----~~l~~~~~~L~~gG~l~~~~~~~~~--------------~~~~~~~l~~-~f~~  232 (237)
                      +|+++     .+...     .+++++.+.|||||++++.......              .+.....+++ ||..
T Consensus       131 ~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~  204 (236)
T 1zx0_A          131 GILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRR  204 (236)
T ss_dssp             EEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCG
T ss_pred             EEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecCcHHHhhchhhhhhhhhccHHHHHHHHHCCCCC
Confidence            99982     11111     3489999999999999865432110              1344556777 7874

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.55  E-value=7.5e-14  Score=106.37  Aligned_cols=106  Identities=19%  Similarity=0.147  Sum_probs=88.1

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ++..+...++.+|||+|||+|.++..++..   ..+++++|+++.+++.+++++...+..+ +++...|+.+..+ .   
T Consensus        24 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~~-~---   95 (199)
T 2xvm_A           24 VLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIENLDN-LHTRVVDLNNLTF-D---   95 (199)
T ss_dssp             HHHHTTTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCTT-EEEEECCGGGCCC-C---
T ss_pred             HHHHhhccCCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCCCCC-cEEEEcchhhCCC-C---
Confidence            566667778889999999999999988876   3689999999999999999998877755 9999999986443 3   


Q ss_pred             CCCCEEEEeCC-------ChhchHHHHHhcccCCCEEEEEe
Q 026506          180 GLADSIFLDLP-------QPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       180 ~~~D~v~~~~~-------~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +.||+|+....       ....+++++.+.|+|||.+++..
T Consensus        96 ~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A           96 RQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             CCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            78999987532       34568999999999999988765

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.54  E-value=2.6e-14  Score=111.69  Aligned_cols=103  Identities=21%  Similarity=0.245  Sum_probs=84.1

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC----CcEEEEEccccCCCCCCCCCCC
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS----SFVTVGVRDIQGQGFPDEFSGL  181 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~----~~i~~~~~d~~~~~~~~~~~~~  181 (237)
                      +.++.+|||+|||+|.++..++..   ..+++++|+++.+++.++++....+..    .++++...|+....++.   +.
T Consensus        28 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~  101 (235)
T 3sm3_A           28 LQEDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHD---SS  101 (235)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCT---TC
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCC---Cc
Confidence            357889999999999999988877   368999999999999999988766652    24889999998655544   78


Q ss_pred             CCEEEEeC-----CChh---chHHHHHhcccCCCEEEEEeC
Q 026506          182 ADSIFLDL-----PQPW---LAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       182 ~D~v~~~~-----~~~~---~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ||+|++..     +++.   .+++++.+.|+|||++++..+
T Consensus       102 ~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (235)
T 3sm3_A          102 FDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF  142 (235)
T ss_dssp             EEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence            99998753     3444   689999999999999997743

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.54  E-value=2.4e-14  Score=115.06  Aligned_cols=125  Identities=18%  Similarity=0.154  Sum_probs=97.2

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT--GV-SSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      .+.+|||+|||+|.++..+++.. +..+++++|+++.+++.|++++...  +. ..++++..+|+.+. ++. ..+.||+
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~-l~~-~~~~fD~  151 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH-IAK-SENQYDV  151 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH-HHT-CCSCEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH-Hhh-CCCCeeE
Confidence            46899999999999999888763 4579999999999999999987542  23 34599999998641 111 1267999


Q ss_pred             EEEeCCCh---------hchHHHHHhcccCCCEEEEEeCC----HHHHHHHHHHHHhcCccccc
Q 026506          185 IFLDLPQP---------WLAIPSAKKMLKQDGILCSFSPC----IEQVQRSCESLRLNFTGKES  235 (237)
Q Consensus       185 v~~~~~~~---------~~~l~~~~~~L~~gG~l~~~~~~----~~~~~~~~~~l~~~f~~v~~  235 (237)
                      |++|.+.+         .++++.+.+.|+|||++++...+    ......+.+.+++.|..++.
T Consensus       152 Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~  215 (275)
T 1iy9_A          152 IMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKL  215 (275)
T ss_dssp             EEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEE
T ss_pred             EEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEE
Confidence            99987653         46899999999999999987533    45567777888887887664

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.54  E-value=1.3e-14  Score=113.69  Aligned_cols=119  Identities=18%  Similarity=0.250  Sum_probs=94.6

Q ss_pred             cccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC
Q 026506           92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG  171 (237)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~  171 (237)
                      +.+.....+...+...++.+|||+|||+|..+..++... +..+++++|+++.+++.|++++...+..+++++..+|+.+
T Consensus        38 ~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  116 (233)
T 2gpy_A           38 MDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQ  116 (233)
T ss_dssp             CCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHC-TTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGG
T ss_pred             cCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHH
Confidence            344444445556666788999999999999999999886 4589999999999999999999988887669999999874


Q ss_pred             CCCCCC-CCCCCCEEEEeCCC--hhchHHHHHhcccCCCEEEEE
Q 026506          172 QGFPDE-FSGLADSIFLDLPQ--PWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       172 ~~~~~~-~~~~~D~v~~~~~~--~~~~l~~~~~~L~~gG~l~~~  212 (237)
                      . ++.. ..+.||+|+++.+.  ...+++.+.+.|+|||++++.
T Consensus       117 ~-~~~~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          117 L-GEKLELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             S-HHHHTTSCCEEEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             H-HHhcccCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            1 1110 02679999998753  356899999999999999875

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.54  E-value=1.1e-14  Score=114.58  Aligned_cols=110  Identities=19%  Similarity=0.149  Sum_probs=89.3

Q ss_pred             cCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC--CCCCC--CC
Q 026506          104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDE--FS  179 (237)
Q Consensus       104 ~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--~~  179 (237)
                      +...++.+|||+|||+|..+..+++.+++..+++++|+++.+++.|+++++..++.+++++..+|+.+.  .+...  ..
T Consensus        66 ~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~  145 (237)
T 3c3y_A           66 LKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESE  145 (237)
T ss_dssp             HHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCT
T ss_pred             HHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCC
Confidence            444567899999999999999999987656899999999999999999999888877799999998641  11100  01


Q ss_pred             CCCCEEEEeCCC--hhchHHHHHhcccCCCEEEEEe
Q 026506          180 GLADSIFLDLPQ--PWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       180 ~~~D~v~~~~~~--~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +.||+||++...  ...+++.+.+.|+|||++++-.
T Consensus       146 ~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          146 GSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             TCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCcCEEEECCchHHHHHHHHHHHHhcCCCeEEEEec
Confidence            679999998753  3468999999999999998653

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.54  E-value=9.5e-14  Score=112.84  Aligned_cols=112  Identities=18%  Similarity=0.087  Sum_probs=88.1

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEccccCCCCCC--
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-GVSSFVTVGVRDIQGQGFPD--  176 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~~~~--  176 (237)
                      .+......++.+|||+|||+|..+..++..+.+..+++++|+++.+++.|++++... +...++++..+|+.+..++.  
T Consensus        28 ~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  107 (299)
T 3g5t_A           28 MIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGAD  107 (299)
T ss_dssp             HHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTT
T ss_pred             HHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccc
Confidence            333334468899999999999999999987545689999999999999999998876 33455999999997633322  


Q ss_pred             -CCCCCCCEEEEeCC----ChhchHHHHHhcccCCCEEEE
Q 026506          177 -EFSGLADSIFLDLP----QPWLAIPSAKKMLKQDGILCS  211 (237)
Q Consensus       177 -~~~~~~D~v~~~~~----~~~~~l~~~~~~L~~gG~l~~  211 (237)
                       ...+.||+|++...    ++..+++++.+.|+|||.+++
T Consensus       108 ~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          108 SVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             TTTSSCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccCCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEE
Confidence             01157999987533    566799999999999999987

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.54  E-value=3.5e-14  Score=114.62  Aligned_cols=118  Identities=20%  Similarity=0.156  Sum_probs=92.3

Q ss_pred             HHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506          101 IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG  180 (237)
Q Consensus       101 ~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  180 (237)
                      +..+...++.+|||+|||+|.++..++..  +..+++++|+|+.+++.|++++..+++.+++++..+|+.+ .++    +
T Consensus       116 l~~~~~~~~~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~-~~~----~  188 (284)
T 1nv8_A          116 LELIRKYGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE-PFK----E  188 (284)
T ss_dssp             HHHHHHHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTG-GGG----G
T ss_pred             HHHhcccCCCEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchh-hcc----c
Confidence            33333346789999999999999999988  5589999999999999999999999987779999999974 222    4


Q ss_pred             CC---CEEEEeCCCh------------------------hchHHHHH-hcccCCCEEEEEeCCHHHHHHHHHHH
Q 026506          181 LA---DSIFLDLPQP------------------------WLAIPSAK-KMLKQDGILCSFSPCIEQVQRSCESL  226 (237)
Q Consensus       181 ~~---D~v~~~~~~~------------------------~~~l~~~~-~~L~~gG~l~~~~~~~~~~~~~~~~l  226 (237)
                      .|   |+|+.|+|-.                        ..+++++. +.|+|||.+++.... .+.+.+.+.+
T Consensus       189 ~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~-~q~~~v~~~~  261 (284)
T 1nv8_A          189 KFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE-DQVEELKKIV  261 (284)
T ss_dssp             GTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT-TCHHHHTTTS
T ss_pred             ccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc-hHHHHHHHHH
Confidence            68   9999986521                        14688899 999999999976553 4444444443

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.54  E-value=1.2e-14  Score=112.16  Aligned_cols=104  Identities=21%  Similarity=0.266  Sum_probs=86.4

Q ss_pred             CCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC-CCCCCCCCCCC
Q 026506          105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GFPDEFSGLAD  183 (237)
Q Consensus       105 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~~~D  183 (237)
                      ...++.+|||+|||+|..+..++..+++..+++++|+++.+++.|++++...+..+++++..+|+.+. ....   + ||
T Consensus        53 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~-fD  128 (210)
T 3c3p_A           53 RIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQR---D-ID  128 (210)
T ss_dssp             HHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCC---S-EE
T ss_pred             HhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCC---C-CC
Confidence            34567899999999999999999886546899999999999999999998888776799999998641 1222   5 99


Q ss_pred             EEEEeCC--ChhchHHHHHhcccCCCEEEEE
Q 026506          184 SIFLDLP--QPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       184 ~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                      +|+++..  ....+++.+.+.|+|||++++.
T Consensus       129 ~v~~~~~~~~~~~~l~~~~~~LkpgG~lv~~  159 (210)
T 3c3p_A          129 ILFMDCDVFNGADVLERMNRCLAKNALLIAV  159 (210)
T ss_dssp             EEEEETTTSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEEEcCChhhhHHHHHHHHHhcCCCeEEEEE
Confidence            9999864  4456899999999999999864

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.53  E-value=1.1e-14  Score=114.62  Aligned_cols=122  Identities=15%  Similarity=0.113  Sum_probs=94.5

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL  187 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~  187 (237)
                      ++.+|||+|||+|.++..++...  ..+++++|+++.+++.+++++...+. .++++...|+.+..++.   +.||+|++
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~---~~fD~v~~  152 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTPEP---DSYDVIWI  152 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCCCS---SCEEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCC-ceEEEEEcChhhcCCCC---CCEEEEEE
Confidence            68899999999999998887763  46899999999999999998776542 34889999987644443   67999987


Q ss_pred             eCC-----Ch--hchHHHHHhcccCCCEEEEEeCCHH--------------HHHHHHHHHHh-cCccccc
Q 026506          188 DLP-----QP--WLAIPSAKKMLKQDGILCSFSPCIE--------------QVQRSCESLRL-NFTGKES  235 (237)
Q Consensus       188 ~~~-----~~--~~~l~~~~~~L~~gG~l~~~~~~~~--------------~~~~~~~~l~~-~f~~v~~  235 (237)
                      +..     ++  ..+++++.+.|+|||++++..+...              ..+++.+.+++ ||..+++
T Consensus       153 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~  222 (241)
T 2ex4_A          153 QWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAE  222 (241)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred             cchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEe
Confidence            632     22  2689999999999999997553211              35677778887 8886654

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.53  E-value=5.4e-14  Score=111.34  Aligned_cols=128  Identities=12%  Similarity=0.102  Sum_probs=99.1

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ++..+...++.+|||+|||+|.++..++...  ..+++++|+++.+++.+++++...   .++++..+|+.+..++.   
T Consensus        85 ~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~---  156 (254)
T 1xtp_A           85 FIASLPGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPP---  156 (254)
T ss_dssp             HHHTSTTCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCS---
T ss_pred             HHHhhcccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCCCCC---
Confidence            5556666788999999999999999888874  468999999999999999986543   34899999997654444   


Q ss_pred             CCCCEEEEeCC-------ChhchHHHHHhcccCCCEEEEEeCCHH---------------HHHHHHHHHHh-cCccccc
Q 026506          180 GLADSIFLDLP-------QPWLAIPSAKKMLKQDGILCSFSPCIE---------------QVQRSCESLRL-NFTGKES  235 (237)
Q Consensus       180 ~~~D~v~~~~~-------~~~~~l~~~~~~L~~gG~l~~~~~~~~---------------~~~~~~~~l~~-~f~~v~~  235 (237)
                      +.||+|++...       +...+++++.+.|+|||++++..+...               ..+++.+.+++ ||..+++
T Consensus       157 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~  235 (254)
T 1xtp_A          157 NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKE  235 (254)
T ss_dssp             SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred             CCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEe
Confidence            68999987432       234689999999999999998764211               23667777777 8886654

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.53  E-value=3.4e-14  Score=110.93  Aligned_cols=117  Identities=19%  Similarity=0.294  Sum_probs=92.4

Q ss_pred             ccccHHHHHHhc--CCCCCCEEEEEccCccHHHHHHHHHhCC-----CcEEEEEeCCHHHHHHHHHHHHHcC-----CCC
Q 026506           93 YIADISFVIMYL--ELVPGCLVLESGTGSGSLTTSLARAVAP-----TGHVYTFDFHEQRAASAREDFERTG-----VSS  160 (237)
Q Consensus        93 ~~~~~~~~~~~~--~~~~~~~vldiG~G~G~~~~~~~~~~~~-----~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~  160 (237)
                      .|.....+++.+  .+.++.+|||+|||+|.++..+++..+.     ..+|+++|+++.+++.+++++...+     ..+
T Consensus        67 ~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~  146 (227)
T 1r18_A           67 APHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQ  146 (227)
T ss_dssp             CHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             ChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCc
Confidence            344445567766  4788999999999999999999887632     2589999999999999999987755     344


Q ss_pred             cEEEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          161 FVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       161 ~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                       +++..+|..+ .++.  .+.||+|+.+..... +++++.+.|||||++++...
T Consensus       147 -v~~~~~d~~~-~~~~--~~~fD~I~~~~~~~~-~~~~~~~~LkpgG~lvi~~~  195 (227)
T 1r18_A          147 -LLIVEGDGRK-GYPP--NAPYNAIHVGAAAPD-TPTELINQLASGGRLIVPVG  195 (227)
T ss_dssp             -EEEEESCGGG-CCGG--GCSEEEEEECSCBSS-CCHHHHHTEEEEEEEEEEES
T ss_pred             -eEEEECCccc-CCCc--CCCccEEEECCchHH-HHHHHHHHhcCCCEEEEEEe
Confidence             9999999874 3432  157999998876554 67999999999999987654

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.53  E-value=2e-14  Score=107.87  Aligned_cols=112  Identities=16%  Similarity=0.163  Sum_probs=88.0

Q ss_pred             HHHhcC-CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC-CCCCC
Q 026506          100 VIMYLE-LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GFPDE  177 (237)
Q Consensus       100 ~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~  177 (237)
                      ++..+. ..++.+|||+|||+|.++..++..  +..+++++|+++.+++.|++++...++.+++++..+|+.+. .... 
T Consensus        22 ~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-   98 (177)
T 2esr_A           22 IFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLT-   98 (177)
T ss_dssp             HHHHHCSCCCSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBC-
T ss_pred             HHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhc-
Confidence            445554 567889999999999999888876  44799999999999999999998888765699999998751 1111 


Q ss_pred             CCCCCCEEEEeCCCh----hchHHHHH--hcccCCCEEEEEeCCH
Q 026506          178 FSGLADSIFLDLPQP----WLAIPSAK--KMLKQDGILCSFSPCI  216 (237)
Q Consensus       178 ~~~~~D~v~~~~~~~----~~~l~~~~--~~L~~gG~l~~~~~~~  216 (237)
                        +.||+|+++++-.    .+.++.+.  +.|+|||.+++..+..
T Consensus        99 --~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~  141 (177)
T 2esr_A           99 --GRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKT  141 (177)
T ss_dssp             --SCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             --CCCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence              5699999987632    24566665  8999999999776543

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.53  E-value=2.3e-14  Score=119.41  Aligned_cols=117  Identities=17%  Similarity=0.185  Sum_probs=90.5

Q ss_pred             HHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH-------HHcCC-CCcEEEEEcc
Q 026506           97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDF-------ERTGV-SSFVTVGVRD  168 (237)
Q Consensus        97 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~-------~~~~~-~~~i~~~~~d  168 (237)
                      +..++..+.+.++++|||+|||+|.+++.++... +..+++|+|+++.+++.|+++.       ..+++ ..++++..+|
T Consensus       162 i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~-g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD  240 (438)
T 3uwp_A          162 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD  240 (438)
T ss_dssp             HHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHC-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence            4457788889999999999999999999998875 4457999999999999998764       33455 2459999999


Q ss_pred             ccCCCCCCCCCCCCCEEEEeCC----ChhchHHHHHhcccCCCEEEEEeCC
Q 026506          169 IQGQGFPDEFSGLADSIFLDLP----QPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       169 ~~~~~~~~~~~~~~D~v~~~~~----~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      +.+.++... -..||+|+++..    +....|.++++.|||||+|++..+.
T Consensus       241 ~~~lp~~d~-~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE~f  290 (438)
T 3uwp_A          241 FLSEEWRER-IANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPF  290 (438)
T ss_dssp             TTSHHHHHH-HHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESSCS
T ss_pred             ccCCccccc-cCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEeecc
Confidence            986433210 035999998754    3345788899999999999976443

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.53  E-value=1.8e-13  Score=111.57  Aligned_cols=115  Identities=25%  Similarity=0.322  Sum_probs=90.1

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .....+++.+|++|||+|||+|+.+.+++..+++.++|+++|+++.+++.++++++++++.+ +++..+|+.+.......
T Consensus        93 l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~  171 (309)
T 2b9e_A           93 LPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC-CELAEEDFLAVSPSDPR  171 (309)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCGGGSCTTCGG
T ss_pred             HHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCChHhcCccccc
Confidence            45567788999999999999999999999988666899999999999999999999999876 99999998753221100


Q ss_pred             CCCCCEEEEeCCCh------------h-----------------chHHHHHhcccCCCEEEEEeCCH
Q 026506          179 SGLADSIFLDLPQP------------W-----------------LAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       179 ~~~~D~v~~~~~~~------------~-----------------~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                      ...||.|++|+|+.            |                 ++++.+.+.++ ||+|+ |++|.
T Consensus       172 ~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lv-YsTCs  236 (309)
T 2b9e_A          172 YHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLV-YSTCS  236 (309)
T ss_dssp             GTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEE-EEESC
T ss_pred             cCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEE-EECCC
Confidence            14699999987631            0                 24667777776 88766 76554

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.53  E-value=2e-14  Score=110.28  Aligned_cols=104  Identities=18%  Similarity=0.140  Sum_probs=81.2

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccCCCCCCCCCCC-CCEE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS-SFVTVGVRDIQGQGFPDEFSGL-ADSI  185 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~-~D~v  185 (237)
                      ++.+|||+|||+|.++..++..  ...+|+++|+++.+++.|++++..+++. .++++..+|+.+.. +....+. ||+|
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~~~fD~I  129 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSR--QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFL-KQPQNQPHFDVV  129 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHT-TSCCSSCCEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHc--cCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHH-HhhccCCCCCEE
Confidence            6789999999999999886665  2368999999999999999999988873 34999999987521 1101267 9999


Q ss_pred             EEeCC----ChhchHHHH--HhcccCCCEEEEEeC
Q 026506          186 FLDLP----QPWLAIPSA--KKMLKQDGILCSFSP  214 (237)
Q Consensus       186 ~~~~~----~~~~~l~~~--~~~L~~gG~l~~~~~  214 (237)
                      +++++    .....++.+  .+.|+|||.+++...
T Consensus       130 ~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~  164 (201)
T 2ift_A          130 FLDPPFHFNLAEQAISLLCENNWLKPNALIYVETE  164 (201)
T ss_dssp             EECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             EECCCCCCccHHHHHHHHHhcCccCCCcEEEEEEC
Confidence            99887    123467777  567999999987654

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.53  E-value=1.9e-13  Score=114.37  Aligned_cols=107  Identities=19%  Similarity=0.193  Sum_probs=89.3

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ++..++..++.+|||+|||+|.++..+++.. +..+++++|+ +.+++.+++++...++.+++++..+|+. ..++    
T Consensus       194 l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p----  266 (369)
T 3gwz_A          194 VAAAYDFSGAATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIP----  266 (369)
T ss_dssp             HHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCC----
T ss_pred             HHHhCCCccCcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCC----
Confidence            5556677788999999999999999999885 5679999999 9999999999988887777999999998 4444    


Q ss_pred             CCCCEEEEe-----CCChh--chHHHHHhcccCCCEEEEEe
Q 026506          180 GLADSIFLD-----LPQPW--LAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       180 ~~~D~v~~~-----~~~~~--~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .+||+|++.     .++..  .+++++.+.|+|||++++..
T Consensus       267 ~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e  307 (369)
T 3gwz_A          267 DGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVID  307 (369)
T ss_dssp             SSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             CCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            369999873     33332  58999999999999999865

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.52  E-value=1e-13  Score=110.06  Aligned_cols=105  Identities=17%  Similarity=0.230  Sum_probs=87.0

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .++..+...++.+|||+|||+|.++..++... +..+++++|+++.+++.++++     ..+ +++..+|+.+.. +.  
T Consensus        24 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~-----~~~-~~~~~~d~~~~~-~~--   93 (259)
T 2p35_A           24 DLLAQVPLERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADR-----LPN-TNFGKADLATWK-PA--   93 (259)
T ss_dssp             HHHTTCCCSCCSSEEEETCTTTHHHHHHHHHH-CTTSEEEEESCHHHHHHHHHH-----STT-SEEEECCTTTCC-CS--
T ss_pred             HHHHhcCCCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHh-----CCC-cEEEECChhhcC-cc--
Confidence            36666777888999999999999999999886 457899999999999999986     223 888999987633 33  


Q ss_pred             CCCCCEEEEeC-----CChhchHHHHHhcccCCCEEEEEeC
Q 026506          179 SGLADSIFLDL-----PQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       179 ~~~~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                       +.||+|+++.     +++..+++++.+.|+|||++++..+
T Consensus        94 -~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  133 (259)
T 2p35_A           94 -QKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMP  133 (259)
T ss_dssp             -SCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             -CCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeC
Confidence             7899999754     4666789999999999999998765

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.52  E-value=8.9e-15  Score=114.76  Aligned_cols=111  Identities=18%  Similarity=0.231  Sum_probs=88.5

Q ss_pred             hcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC--CCCC-CCC
Q 026506          103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPD-EFS  179 (237)
Q Consensus       103 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~-~~~  179 (237)
                      .+...++.+|||+|||+|..+..++..+++..+++++|+++.+++.|++++...++.+++++..+|+.+.  .++. ...
T Consensus        67 l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~  146 (232)
T 3cbg_A           67 LISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPL  146 (232)
T ss_dssp             HHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSC
T ss_pred             HHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCC
Confidence            3445567899999999999999999887546799999999999999999998888877799999997531  1111 001


Q ss_pred             CCCCEEEEeCC--ChhchHHHHHhcccCCCEEEEEe
Q 026506          180 GLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       180 ~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +.||+|+++..  ....+++.+.+.|+|||++++..
T Consensus       147 ~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~  182 (232)
T 3cbg_A          147 PEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDN  182 (232)
T ss_dssp             CCEEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred             CCcCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            56999999875  33568999999999999999753

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.51  E-value=1e-13  Score=108.32  Aligned_cols=112  Identities=22%  Similarity=0.212  Sum_probs=90.2

Q ss_pred             cccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC
Q 026506           94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG  173 (237)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~  173 (237)
                      +.....++..+...++.+|||+|||+|.++..++...   .+++++|+++.+++.+++++...+   ++++..+|+.+ .
T Consensus        56 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~-~  128 (231)
T 1vbf_A           56 LNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTL-G  128 (231)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGG-C
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCccc-c
Confidence            3444457777888899999999999999999998873   789999999999999999987665   49999999874 2


Q ss_pred             CCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCC
Q 026506          174 FPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       174 ~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      ++.  .+.||+|+++..... ..+.+.+.|+|||++++..+.
T Consensus       129 ~~~--~~~fD~v~~~~~~~~-~~~~~~~~L~pgG~l~~~~~~  167 (231)
T 1vbf_A          129 YEE--EKPYDRVVVWATAPT-LLCKPYEQLKEGGIMILPIGV  167 (231)
T ss_dssp             CGG--GCCEEEEEESSBBSS-CCHHHHHTEEEEEEEEEEECS
T ss_pred             ccc--CCCccEEEECCcHHH-HHHHHHHHcCCCcEEEEEEcC
Confidence            322  267999998765433 567899999999999977654

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.51  E-value=1.5e-13  Score=113.42  Aligned_cols=126  Identities=17%  Similarity=0.170  Sum_probs=98.7

Q ss_pred             hcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCC
Q 026506          103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA  182 (237)
Q Consensus       103 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  182 (237)
                      .++..++.+|||+|||+|.++..+++.. +..+++++|+ +.+++.+++++...++.+++++..+|+. ..++    .+|
T Consensus       164 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p----~~~  236 (332)
T 3i53_A          164 KYDWAALGHVVDVGGGSGGLLSALLTAH-EDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLP----AGA  236 (332)
T ss_dssp             SSCCGGGSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCC----CSC
T ss_pred             hCCCCCCCEEEEeCCChhHHHHHHHHHC-CCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCC----CCC
Confidence            3345567899999999999999999886 5578999999 9999999999988887777999999997 4444    369


Q ss_pred             CEEEEe-----CCCh--hchHHHHHhcccCCCEEEEEeCCHH---------------------HHHHHHHHHHh-cCccc
Q 026506          183 DSIFLD-----LPQP--WLAIPSAKKMLKQDGILCSFSPCIE---------------------QVQRSCESLRL-NFTGK  233 (237)
Q Consensus       183 D~v~~~-----~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~---------------------~~~~~~~~l~~-~f~~v  233 (237)
                      |+|++.     .+++  ..+++++.+.|+|||++++..+...                     ..+++.+.+++ ||+.+
T Consensus       237 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~  316 (332)
T 3i53_A          237 GGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVR  316 (332)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEE
T ss_pred             cEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEE
Confidence            999863     3343  5689999999999999998764321                     13556666777 77765


Q ss_pred             cc
Q 026506          234 ES  235 (237)
Q Consensus       234 ~~  235 (237)
                      ++
T Consensus       317 ~~  318 (332)
T 3i53_A          317 AA  318 (332)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.51  E-value=5.2e-14  Score=114.42  Aligned_cols=121  Identities=15%  Similarity=0.148  Sum_probs=93.9

Q ss_pred             CEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC--CCCCCCCCCCCEEEE
Q 026506          110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDEFSGLADSIFL  187 (237)
Q Consensus       110 ~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~~D~v~~  187 (237)
                      .+|||||||+|.++..+++.. +..+++++|+++.+++.|++++.... ..+++++.+|+.+.  ..+.   +.||+|++
T Consensus        91 ~rVLdIG~G~G~la~~la~~~-p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~~~---~~fDvIi~  165 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVY-PQSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESFTP---ASRDVIIR  165 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHS-TTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTCCT---TCEEEEEE
T ss_pred             CEEEEEECCcCHHHHHHHHHC-CCcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhccC---CCCCEEEE
Confidence            499999999999999999875 45699999999999999999875432 34599999998751  2222   68999999


Q ss_pred             eCCCh---------hchHHHHHhcccCCCEEEEEeCC---HHHHHHHHHHHHhcCccccc
Q 026506          188 DLPQP---------WLAIPSAKKMLKQDGILCSFSPC---IEQVQRSCESLRLNFTGKES  235 (237)
Q Consensus       188 ~~~~~---------~~~l~~~~~~L~~gG~l~~~~~~---~~~~~~~~~~l~~~f~~v~~  235 (237)
                      |...+         .++++.+.+.|+|||++++....   ........+.+++.|..+.+
T Consensus       166 D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF~~v~~  225 (317)
T 3gjy_A          166 DVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFEHVAV  225 (317)
T ss_dssp             CCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHCSEEEE
T ss_pred             CCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHCCceEE
Confidence            86432         35799999999999999876532   23456777788877877654

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.51  E-value=4.9e-14  Score=108.20  Aligned_cols=102  Identities=12%  Similarity=0.086  Sum_probs=81.1

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC-CCCCCCCCCCCCEEE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGFPDEFSGLADSIF  186 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~~~~D~v~  186 (237)
                      ++.+|||+|||+|.++..++..  ...+|+++|+++.+++.|++++..++..+ +++..+|+.+ .....   +.||+|+
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~--~~~~V~~vD~s~~~l~~a~~~~~~~~~~~-v~~~~~D~~~~~~~~~---~~fD~V~  127 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSR--YAAGATLIEMDRAVSQQLIKNLATLKAGN-ARVVNSNAMSFLAQKG---TPHNIVF  127 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCS-EEEECSCHHHHHSSCC---CCEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHhc--CCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHHHhhcC---CCCCEEE
Confidence            6789999999999999887765  23589999999999999999999888744 9999999865 22222   6799999


Q ss_pred             EeCC----ChhchHHHHHh--cccCCCEEEEEeCC
Q 026506          187 LDLP----QPWLAIPSAKK--MLKQDGILCSFSPC  215 (237)
Q Consensus       187 ~~~~----~~~~~l~~~~~--~L~~gG~l~~~~~~  215 (237)
                      ++++    .....++.+.+  .|+|||++++....
T Consensus       128 ~~~p~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~  162 (202)
T 2fpo_A          128 VDPPFRRGLLEETINLLEDNGWLADEALIYVESEV  162 (202)
T ss_dssp             ECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             ECCCCCCCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence            9987    23346677755  59999999866543

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.51  E-value=4.5e-14  Score=106.63  Aligned_cols=114  Identities=15%  Similarity=0.149  Sum_probs=87.1

Q ss_pred             HHHhc-CCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC--CCC
Q 026506          100 VIMYL-ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--FPD  176 (237)
Q Consensus       100 ~~~~~-~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~  176 (237)
                      ++..+ ...++.+|||+|||+|.++..++..  +..+++++|+++.+++.|++++...++.+++++..+|+.+..  ++ 
T Consensus        35 ~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-  111 (187)
T 2fhp_A           35 IFNMIGPYFDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFY-  111 (187)
T ss_dssp             HHHHHCSCCSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHH-
T ss_pred             HHHHHHhhcCCCCEEEeCCccCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHH-
Confidence            44444 3457889999999999999887774  447999999999999999999998887656999999987511  10 


Q ss_pred             CCCCCCCEEEEeCC----ChhchHHHH--HhcccCCCEEEEEeCCH
Q 026506          177 EFSGLADSIFLDLP----QPWLAIPSA--KKMLKQDGILCSFSPCI  216 (237)
Q Consensus       177 ~~~~~~D~v~~~~~----~~~~~l~~~--~~~L~~gG~l~~~~~~~  216 (237)
                      ...+.||+|+++++    .....++.+  .+.|+|||.+++..+..
T Consensus       112 ~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~  157 (187)
T 2fhp_A          112 EEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKT  157 (187)
T ss_dssp             HTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             hcCCCCCEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence            00167999999876    223456666  78899999999776544

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.51  E-value=1.2e-13  Score=107.12  Aligned_cols=107  Identities=14%  Similarity=0.125  Sum_probs=81.6

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH----HHcCCCCcEEEEEccccCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDF----ERTGVSSFVTVGVRDIQGQGFP  175 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~----~~~~~~~~i~~~~~d~~~~~~~  175 (237)
                      .+..+...++.+|||+|||+|.++..++... +..+|+++|+++.+++.+.++.    ...+..+ +.+..+|+.+.+++
T Consensus        19 ~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~-v~~~~~d~~~l~~~   96 (218)
T 3mq2_A           19 EFEQLRSQYDDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADKSRMEKISAKAAAKPAKGGLPN-LLYLWATAERLPPL   96 (218)
T ss_dssp             HHHHHHTTSSEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTT-EEEEECCSTTCCSC
T ss_pred             HHHHhhccCCCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCc-eEEEecchhhCCCC
Confidence            4455567889999999999999999999874 5689999999999888643332    2345555 99999999875544


Q ss_pred             CCCCCCCCEEEEeC----------CChhchHHHHHhcccCCCEEEEE
Q 026506          176 DEFSGLADSIFLDL----------PQPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       176 ~~~~~~~D~v~~~~----------~~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                      .   +. |.+++..          +++..+++++.+.|||||++++.
T Consensus        97 ~---~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  139 (218)
T 3mq2_A           97 S---GV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVA  139 (218)
T ss_dssp             C---CE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEE
T ss_pred             C---CC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEE
Confidence            3   34 7766443          34467899999999999999874

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.50  E-value=2.5e-14  Score=106.71  Aligned_cols=120  Identities=16%  Similarity=0.188  Sum_probs=91.7

Q ss_pred             HHHhcC-CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-----
Q 026506          100 VIMYLE-LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-----  173 (237)
Q Consensus       100 ~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----  173 (237)
                      ++..+. ..++.+|||+|||+|.++..+++..++..+++++|+++ +++.          .+ +++...|+.+..     
T Consensus        13 ~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~-~~~~~~d~~~~~~~~~~   80 (180)
T 1ej0_A           13 IQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VG-VDFLQGDFRDELVMKAL   80 (180)
T ss_dssp             HHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TT-EEEEESCTTSHHHHHHH
T ss_pred             HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------Cc-EEEEEcccccchhhhhh
Confidence            334443 67889999999999999999998876668999999998 5432          23 888999987533     


Q ss_pred             ---CCCCCCCCCCEEEEeCCCh----------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHhcCcccc
Q 026506          174 ---FPDEFSGLADSIFLDLPQP----------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGKE  234 (237)
Q Consensus       174 ---~~~~~~~~~D~v~~~~~~~----------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~v~  234 (237)
                         ++.   +.||+|+.+.+..                ..+++.+.+.|+|||.+++..+.......+.+.+++.|..++
T Consensus        81 ~~~~~~---~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~  157 (180)
T 1ej0_A           81 LERVGD---SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVK  157 (180)
T ss_dssp             HHHHTT---CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHHEEEEE
T ss_pred             hccCCC---CceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHHhhhhEE
Confidence               333   6899999876522                467899999999999999877766666777777776665554

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.50  E-value=4.2e-14  Score=110.93  Aligned_cols=127  Identities=23%  Similarity=0.187  Sum_probs=94.8

Q ss_pred             HHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506          101 IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG  180 (237)
Q Consensus       101 ~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  180 (237)
                      +......+ .+|||+|||+|.++..++..   ..+++++|+++.+++.++++....+...++++..+|+.+.. +.   +
T Consensus        60 ~~~~~~~~-~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~---~  131 (235)
T 3lcc_A           60 VDTSSLPL-GRALVPGCGGGHDVVAMASP---ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PT---E  131 (235)
T ss_dssp             HHTTCSCC-EEEEEETCTTCHHHHHHCBT---TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CS---S
T ss_pred             HHhcCCCC-CCEEEeCCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CC---C
Confidence            33344444 59999999999999887653   47899999999999999999876544455999999998532 22   6


Q ss_pred             CCCEEEEeC-----C--ChhchHHHHHhcccCCCEEEEEeCCH----------HHHHHHHHHHHh-cCccccc
Q 026506          181 LADSIFLDL-----P--QPWLAIPSAKKMLKQDGILCSFSPCI----------EQVQRSCESLRL-NFTGKES  235 (237)
Q Consensus       181 ~~D~v~~~~-----~--~~~~~l~~~~~~L~~gG~l~~~~~~~----------~~~~~~~~~l~~-~f~~v~~  235 (237)
                      .||+|+...     +  ....+++++.+.|+|||++++.....          ...+++.+.+++ ||..+++
T Consensus       132 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  204 (235)
T 3lcc_A          132 LFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSV  204 (235)
T ss_dssp             CEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEE
T ss_pred             CeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEE
Confidence            899998643     2  34568999999999999998764321          124667777777 7876553

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.50  E-value=1.8e-13  Score=109.68  Aligned_cols=111  Identities=21%  Similarity=0.212  Sum_probs=87.5

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHH------HHHHHHHHHHHcCCCCcEEEEEcc-ccC-
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQ------RAASAREDFERTGVSSFVTVGVRD-IQG-  171 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~------~~~~a~~~~~~~~~~~~i~~~~~d-~~~-  171 (237)
                      ++..+.+.++.+|||+|||+|.++..++...++..+++++|+++.      +++.+++++...+...++++...| +.. 
T Consensus        35 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  114 (275)
T 3bkx_A           35 IAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDD  114 (275)
T ss_dssp             HHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTC
T ss_pred             HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhc
Confidence            566778889999999999999999999988766689999999997      999999999887775569999998 432 


Q ss_pred             -CCCCCCCCCCCCEEEEeC-----CChhchHHHHHhcccCCCEEEEEe
Q 026506          172 -QGFPDEFSGLADSIFLDL-----PQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       172 -~~~~~~~~~~~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                       .+++.   +.||+|++..     +++..+++.+..+++|||++++..
T Consensus       115 ~~~~~~---~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~  159 (275)
T 3bkx_A          115 LGPIAD---QHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAE  159 (275)
T ss_dssp             CGGGTT---CCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEE
T ss_pred             cCCCCC---CCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEE
Confidence             22333   6899998743     345555666666677799998764

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.50  E-value=4.9e-14  Score=109.99  Aligned_cols=116  Identities=19%  Similarity=0.174  Sum_probs=89.1

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC-CCCCCCCCCCCCE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGFPDEFSGLADS  184 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~~~~D~  184 (237)
                      ..++.+|||+|||+|.++..++..   ..+|+++|+++.+++.++++     ..+ +++..+|+.+ .+++  ..+.||+
T Consensus        46 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-----~~~-~~~~~~d~~~~~~~~--~~~~fD~  114 (226)
T 3m33_A           46 LTPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARAN-----APH-ADVYEWNGKGELPAG--LGAPFGL  114 (226)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHH-----CTT-SEEEECCSCSSCCTT--CCCCEEE
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHh-----CCC-ceEEEcchhhccCCc--CCCCEEE
Confidence            367899999999999999888876   36999999999999999987     223 8899999853 3333  1278999


Q ss_pred             EEEeCCChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCcccc
Q 026506          185 IFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGKE  234 (237)
Q Consensus       185 v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~  234 (237)
                      |+.+ .++..+++++.+.|||||+++..... ...+.+.+.+++ +|..++
T Consensus       115 v~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~l~~~Gf~~~~  163 (226)
T 3m33_A          115 IVSR-RGPTSVILRLPELAAPDAHFLYVGPR-LNVPEVPERLAAVGWDIVA  163 (226)
T ss_dssp             EEEE-SCCSGGGGGHHHHEEEEEEEEEEESS-SCCTHHHHHHHHTTCEEEE
T ss_pred             EEeC-CCHHHHHHHHHHHcCCCcEEEEeCCc-CCHHHHHHHHHHCCCeEEE
Confidence            9987 45667999999999999999844332 233556666776 676543

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.50  E-value=2.3e-14  Score=111.97  Aligned_cols=114  Identities=18%  Similarity=0.195  Sum_probs=90.1

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC--CCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDE  177 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~  177 (237)
                      +...+...++.+|||+|||+|..+..++..+++..+++++|+++.+++.|++++...+..+++++..+|+.+.  .+...
T Consensus        61 l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~  140 (229)
T 2avd_A           61 LANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAA  140 (229)
T ss_dssp             HHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhc
Confidence            3334455678899999999999999999876546899999999999999999999888866699999998641  11100


Q ss_pred             -CCCCCCEEEEeCCC--hhchHHHHHhcccCCCEEEEEe
Q 026506          178 -FSGLADSIFLDLPQ--PWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       178 -~~~~~D~v~~~~~~--~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                       ..+.||+|+++.+.  ...+++.+.+.|+|||.+++..
T Consensus       141 ~~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~  179 (229)
T 2avd_A          141 GEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLR  179 (229)
T ss_dssp             TCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence             00469999998753  3468999999999999999753

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.50  E-value=8.1e-14  Score=112.12  Aligned_cols=103  Identities=25%  Similarity=0.369  Sum_probs=84.7

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ++..+...++.+|||+|||+|.++..++.   +..+++++|+++.+++.++++.     .+ +.+..+|+...++ .   
T Consensus        49 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~-----~~-~~~~~~d~~~~~~-~---  115 (279)
T 3ccf_A           49 LLQLLNPQPGEFILDLGCGTGQLTEKIAQ---SGAEVLGTDNAATMIEKARQNY-----PH-LHFDVADARNFRV-D---  115 (279)
T ss_dssp             HHHHHCCCTTCEEEEETCTTSHHHHHHHH---TTCEEEEEESCHHHHHHHHHHC-----TT-SCEEECCTTTCCC-S---
T ss_pred             HHHHhCCCCCCEEEEecCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHhhC-----CC-CEEEECChhhCCc-C---
Confidence            66677778899999999999999998887   3479999999999999998863     23 7788899876333 2   


Q ss_pred             CCCCEEEEeC-----CChhchHHHHHhcccCCCEEEEEeCC
Q 026506          180 GLADSIFLDL-----PQPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       180 ~~~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      +.||+|++..     +++..+++++.+.|+|||++++..+.
T Consensus       116 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~  156 (279)
T 3ccf_A          116 KPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGG  156 (279)
T ss_dssp             SCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecC
Confidence            6899998753     45667899999999999999987654

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.50  E-value=1.1e-13  Score=106.36  Aligned_cols=101  Identities=13%  Similarity=0.131  Sum_probs=85.6

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL  187 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~  187 (237)
                      ++.+|||+|||+|.++..++... +..+++++|+++.+++.+++++...+..+ +++..+|+.+.. +.   +.||+|+.
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~-~~---~~~D~i~~  138 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFP-SE---PPFDGVIS  138 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSC-CC---SCEEEEEC
T ss_pred             CCCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEecchhhCC-cc---CCcCEEEE
Confidence            47899999999999999999875 45799999999999999999999888877 999999997532 22   67999997


Q ss_pred             eC-CChhchHHHHHhcccCCCEEEEEeC
Q 026506          188 DL-PQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       188 ~~-~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +. .....+++.+.+.|+|||.+++...
T Consensus       139 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~  166 (207)
T 1jsx_A          139 RAFASLNDMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             SCSSSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred             eccCCHHHHHHHHHHhcCCCcEEEEEeC
Confidence            64 3445789999999999999987754

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.50  E-value=1.8e-13  Score=112.81  Aligned_cols=110  Identities=15%  Similarity=0.154  Sum_probs=89.7

Q ss_pred             HHHhcCC--CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC
Q 026506          100 VIMYLEL--VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE  177 (237)
Q Consensus       100 ~~~~~~~--~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  177 (237)
                      ++..++.  .++.+|||+|||+|.++..+++.. +..+++++|++ .+++.+++++...++.+++++..+|+.+..++  
T Consensus       155 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--  230 (335)
T 2r3s_A          155 IAQLVNENKIEPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYG--  230 (335)
T ss_dssp             HHHHHTC--CCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCC--
T ss_pred             HHHhcccccCCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCC--
Confidence            5555666  778999999999999999999886 55799999999 99999999998888777799999999864443  


Q ss_pred             CCCCCCEEEEeCC-----Ch--hchHHHHHhcccCCCEEEEEeCC
Q 026506          178 FSGLADSIFLDLP-----QP--WLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       178 ~~~~~D~v~~~~~-----~~--~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                        ..||+|++...     ++  ..+++++.+.|+|||++++..+.
T Consensus       231 --~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  273 (335)
T 2r3s_A          231 --NDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFI  273 (335)
T ss_dssp             --SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             --CCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeec
Confidence              34999987322     12  36899999999999999887543

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.50  E-value=2e-13  Score=115.54  Aligned_cols=119  Identities=12%  Similarity=0.108  Sum_probs=90.6

Q ss_pred             cccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH-------HHHHHHcCCC-CcEEEE
Q 026506           94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASA-------REDFERTGVS-SFVTVG  165 (237)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a-------~~~~~~~~~~-~~i~~~  165 (237)
                      +..+..++..+.+.++.+|||+|||+|.++..++... +..+|+++|+++.+++.|       ++++...|+. .++++.
T Consensus       228 p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~-g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i  306 (433)
T 1u2z_A          228 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALEC-GCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFS  306 (433)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHH-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEE
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEE
Confidence            4445567788888999999999999999999999876 346899999999999988       8888888842 349998


Q ss_pred             EccccCCC--CCCCCCCCCCEEEEeC----CChhchHHHHHhcccCCCEEEEEeC
Q 026506          166 VRDIQGQG--FPDEFSGLADSIFLDL----PQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       166 ~~d~~~~~--~~~~~~~~~D~v~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .+|.....  +.. ..+.||+|+++.    ++....++++.+.|||||++++..+
T Consensus       307 ~gD~~~~~~~~~~-~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d~  360 (433)
T 1u2z_A          307 LKKSFVDNNRVAE-LIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKS  360 (433)
T ss_dssp             ESSCSTTCHHHHH-HGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred             EcCcccccccccc-ccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEeec
Confidence            87654221  110 015799999852    2233568899999999999997643

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.50  E-value=9e-14  Score=113.20  Aligned_cols=126  Identities=21%  Similarity=0.207  Sum_probs=94.3

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH--cCC-CCcEEEEEccccCC-CCCCCCCCC
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER--TGV-SSFVTVGVRDIQGQ-GFPDEFSGL  181 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~--~~~-~~~i~~~~~d~~~~-~~~~~~~~~  181 (237)
                      ...+.+|||+|||+|.++..+++.. +..+++++|+++.+++.|++++..  .+. ..++++..+|+.+. ....   +.
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~---~~  168 (304)
T 2o07_A           93 HPNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQ---DA  168 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCS---SC
T ss_pred             CCCCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCC---CC
Confidence            3456899999999999999988763 457999999999999999998765  233 34599999998641 1122   67


Q ss_pred             CCEEEEeCCCh---------hchHHHHHhcccCCCEEEEEeCC----HHHHHHHHHHHHhcCccccc
Q 026506          182 ADSIFLDLPQP---------WLAIPSAKKMLKQDGILCSFSPC----IEQVQRSCESLRLNFTGKES  235 (237)
Q Consensus       182 ~D~v~~~~~~~---------~~~l~~~~~~L~~gG~l~~~~~~----~~~~~~~~~~l~~~f~~v~~  235 (237)
                      ||+|++|.+.+         .++++.+.+.|+|||++++...+    ......+.+.+++.|..+++
T Consensus       169 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~  235 (304)
T 2o07_A          169 FDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAY  235 (304)
T ss_dssp             EEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEEE
T ss_pred             ceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHhCCCcee
Confidence            99999988753         35799999999999999977522    23345566666666776654

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.50  E-value=2.8e-13  Score=113.47  Aligned_cols=109  Identities=21%  Similarity=0.263  Sum_probs=90.4

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .++..++..++.+|||+|||+|.++..++... +..+++++|+ +.+++.+++++...++.+++++..+|+.+ .++   
T Consensus       173 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~---  246 (374)
T 1qzz_A          173 APADAYDWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP---  246 (374)
T ss_dssp             HHHHTSCCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS---
T ss_pred             HHHHhCCCCCCCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCC---
Confidence            35666677888999999999999999999885 5579999999 99999999999888887669999999974 444   


Q ss_pred             CCCCCEEEEeC-----CCh--hchHHHHHhcccCCCEEEEEeC
Q 026506          179 SGLADSIFLDL-----PQP--WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       179 ~~~~D~v~~~~-----~~~--~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                       ..||+|++..     ++.  ..+++++.+.|+|||++++...
T Consensus       247 -~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          247 -VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             -CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             -CCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence             3499998743     333  2689999999999999998766

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.50  E-value=4.6e-14  Score=108.41  Aligned_cols=107  Identities=15%  Similarity=0.073  Sum_probs=79.8

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc------------CCCCcEEEEEc
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT------------GVSSFVTVGVR  167 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------------~~~~~i~~~~~  167 (237)
                      .+..+.+.++.+|||+|||+|..+..+++.   ..+|+++|+|+.+++.|+++....            .. .++++.++
T Consensus        14 ~~~~l~~~~~~~vLD~GCG~G~~~~~la~~---g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~   89 (203)
T 1pjz_A           14 YWSSLNVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAA-PGIEIWCG   89 (203)
T ss_dssp             HHHHHCCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEEC-SSSEEEEE
T ss_pred             HHHhcccCCCCEEEEeCCCCcHhHHHHHHC---CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccC-CccEEEEC
Confidence            345556778899999999999999999887   258999999999999999875421            12 34889999


Q ss_pred             cccCCCCCCCCCCCCCEEEEeC-----C--ChhchHHHHHhcccCCCEEEEE
Q 026506          168 DIQGQGFPDEFSGLADSIFLDL-----P--QPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       168 d~~~~~~~~~~~~~~D~v~~~~-----~--~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                      |+.+..++.  .+.||+|+...     +  ....+++++.+.|||||+++++
T Consensus        90 d~~~l~~~~--~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~  139 (203)
T 1pjz_A           90 DFFALTARD--IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI  139 (203)
T ss_dssp             CCSSSTHHH--HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred             ccccCCccc--CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            997633321  14799998632     1  1224789999999999984433

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.50  E-value=3.6e-14  Score=111.75  Aligned_cols=99  Identities=17%  Similarity=0.184  Sum_probs=81.0

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..++.+|||+|||+|.++..+++..   .+++++|+++.+++.|+++...     ++++..+|+.+. .+.   +.||+|
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~-~~~---~~fD~v  107 (250)
T 2p7i_A           40 FFRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDA-QLP---RRYDNI  107 (250)
T ss_dssp             GCCSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGC-CCS---SCEEEE
T ss_pred             hcCCCcEEEECCCCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHc-CcC---CcccEE
Confidence            3567899999999999998888752   4799999999999999987432     499999998753 333   789999


Q ss_pred             EEe-----CCChhchHHHHH-hcccCCCEEEEEeCCH
Q 026506          186 FLD-----LPQPWLAIPSAK-KMLKQDGILCSFSPCI  216 (237)
Q Consensus       186 ~~~-----~~~~~~~l~~~~-~~L~~gG~l~~~~~~~  216 (237)
                      ++.     .+++..+++++. +.|||||++++..+..
T Consensus       108 ~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~  144 (250)
T 2p7i_A          108 VLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNA  144 (250)
T ss_dssp             EEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred             EEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCCh
Confidence            863     456678999999 9999999999887653

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.50  E-value=6.2e-14  Score=110.31  Aligned_cols=99  Identities=18%  Similarity=0.178  Sum_probs=80.7

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL  187 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~  187 (237)
                      ++.+|||+|||+|.++..++..   ..+++++|+++.+++.++++....+.  ++++..+|+.+..++    +.||+|++
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~----~~fD~v~~  107 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNIN----RKFDLITC  107 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCS----CCEEEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHC---CCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCCcc----CCceEEEE
Confidence            7789999999999999888876   36899999999999999999887664  388899998753332    67999998


Q ss_pred             eC---------CChhchHHHHHhcccCCCEEEEEeCC
Q 026506          188 DL---------PQPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       188 ~~---------~~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      ..         .....+++++.+.|+|||++++..+.
T Consensus       108 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  144 (246)
T 1y8c_A          108 CLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS  144 (246)
T ss_dssp             CTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             cCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence            64         12346899999999999999975443

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.50  E-value=1.3e-13  Score=111.69  Aligned_cols=105  Identities=18%  Similarity=0.083  Sum_probs=80.9

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC---------------------------
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS---------------------------  159 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---------------------------  159 (237)
                      .++.+|||+|||+|.++..++...+ ..+|+++|+++.+++.|++++...+..                           
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~-~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR  123 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTC-CSEEEEEESCHHHHHHHHHTC---------------------------------
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence            3688999999999999999999874 479999999999999999986544321                           


Q ss_pred             ------------------------------CcEEEEEccccCCC-----CCCCCCCCCCEEEEeCC-----------Chh
Q 026506          160 ------------------------------SFVTVGVRDIQGQG-----FPDEFSGLADSIFLDLP-----------QPW  193 (237)
Q Consensus       160 ------------------------------~~i~~~~~d~~~~~-----~~~~~~~~~D~v~~~~~-----------~~~  193 (237)
                                                    .++++..+|+....     +..   +.||+|++...           ...
T Consensus       124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~---~~fD~I~~~~vl~~ihl~~~~~~~~  200 (292)
T 3g07_A          124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQT---PEYDVVLCLSLTKWVHLNWGDEGLK  200 (292)
T ss_dssp             ------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCC---CCEEEEEEESCHHHHHHHHHHHHHH
T ss_pred             ccccchhhhccCccccccccccccccccccccceEEecccccCccccccccC---CCcCEEEEChHHHHhhhcCCHHHHH
Confidence                                          35999999987532     223   78999987654           234


Q ss_pred             chHHHHHhcccCCCEEEEEeCC
Q 026506          194 LAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       194 ~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      .+++++.+.|+|||+|++....
T Consensus       201 ~~l~~~~~~LkpGG~lil~~~~  222 (292)
T 3g07_A          201 RMFRRIYRHLRPGGILVLEPQP  222 (292)
T ss_dssp             HHHHHHHHHEEEEEEEEEECCC
T ss_pred             HHHHHHHHHhCCCcEEEEecCC
Confidence            5899999999999999975443

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.49  E-value=4.1e-14  Score=116.10  Aligned_cols=125  Identities=17%  Similarity=0.152  Sum_probs=96.0

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEccccCC-CCCCCCCCCC
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT--GV-SSFVTVGVRDIQGQ-GFPDEFSGLA  182 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~-~~~~~~~~~~  182 (237)
                      .++.+|||+|||+|.++..+++.. +..+++++|+++.+++.|++++...  +. ..++++..+|+.+. ....   +.|
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~---~~f  190 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVT---NTY  190 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCC---SCE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcC---CCc
Confidence            356899999999999999988763 4579999999999999999987642  22 34599999998641 1112   679


Q ss_pred             CEEEEeCCCh---------hchHHHHHhcccCCCEEEEEeCC----HHHHHHHHHHHHhcCccccc
Q 026506          183 DSIFLDLPQP---------WLAIPSAKKMLKQDGILCSFSPC----IEQVQRSCESLRLNFTGKES  235 (237)
Q Consensus       183 D~v~~~~~~~---------~~~l~~~~~~L~~gG~l~~~~~~----~~~~~~~~~~l~~~f~~v~~  235 (237)
                      |+|++|..++         .++++.+.+.|+|||++++...+    .+...++.+.+++.|..++.
T Consensus       191 DvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~  256 (321)
T 2pt6_A          191 DVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEY  256 (321)
T ss_dssp             EEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSEEEE
T ss_pred             eEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCCeEE
Confidence            9999987543         35789999999999999986533    34567777788877877654

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.49  E-value=4.9e-14  Score=107.95  Aligned_cols=115  Identities=17%  Similarity=0.098  Sum_probs=91.2

Q ss_pred             CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506          109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD  188 (237)
Q Consensus       109 ~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~  188 (237)
                      +.+|||+|||+|.++..++..   ..+++++|+++.+++.++++.     .+ +++..+|+.+..++.   +.||+|++.
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~-----~~-~~~~~~d~~~~~~~~---~~fD~v~~~  109 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL---GHQIEGLEPATRLVELARQTH-----PS-VTFHHGTITDLSDSP---KRWAGLLAW  109 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT---TCCEEEECCCHHHHHHHHHHC-----TT-SEEECCCGGGGGGSC---CCEEEEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhC-----CC-CeEEeCcccccccCC---CCeEEEEeh
Confidence            789999999999999988876   358999999999999999862     23 888999997644444   789999874


Q ss_pred             C-----C--ChhchHHHHHhcccCCCEEEEEeCCHH---------------HHHHHHHHHHh-cCccccc
Q 026506          189 L-----P--QPWLAIPSAKKMLKQDGILCSFSPCIE---------------QVQRSCESLRL-NFTGKES  235 (237)
Q Consensus       189 ~-----~--~~~~~l~~~~~~L~~gG~l~~~~~~~~---------------~~~~~~~~l~~-~f~~v~~  235 (237)
                      .     +  +...+++++.+.|+|||.+++..+...               ..+++.+.+++ ||..+++
T Consensus       110 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  179 (203)
T 3h2b_A          110 YSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSS  179 (203)
T ss_dssp             SSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEE
T ss_pred             hhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEE
Confidence            3     2  556789999999999999997764332               25777778887 7876654

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.49  E-value=9.5e-14  Score=110.71  Aligned_cols=105  Identities=18%  Similarity=0.229  Sum_probs=85.0

Q ss_pred             HHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC
Q 026506           97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD  176 (237)
Q Consensus        97 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  176 (237)
                      ...++..+...++.+|||+|||+|.++..++.   +..+++++|+++.+++.++++.       ++++..+|+.+.+++.
T Consensus        23 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~~~   92 (261)
T 3ege_A           23 VNAIINLLNLPKGSVIADIGAGTGGYSVALAN---QGLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENLALPD   92 (261)
T ss_dssp             HHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT---TTCEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSCCSCT
T ss_pred             HHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh---CCCEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhCCCCC
Confidence            33466777788899999999999999998886   3479999999999998876632       3999999997655554


Q ss_pred             CCCCCCCEEEEeC-----CChhchHHHHHhcccCCCEEEEEeCC
Q 026506          177 EFSGLADSIFLDL-----PQPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       177 ~~~~~~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                         +.||+|++..     +++..+++++.+.|| ||.+++..+.
T Consensus        93 ---~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~  132 (261)
T 3ege_A           93 ---KSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFD  132 (261)
T ss_dssp             ---TCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred             ---CCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcC
Confidence               7899998743     566689999999999 9988776644

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.49  E-value=3e-14  Score=112.14  Aligned_cols=120  Identities=19%  Similarity=0.226  Sum_probs=93.5

Q ss_pred             ccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC
Q 026506           93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ  172 (237)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~  172 (237)
                      .+.....+...+...++.+|||+|||+|..+..++...++..+++++|+++.+++.|++++...+..+++++..+|+.+.
T Consensus        45 ~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~  124 (239)
T 2hnk_A           45 SPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALET  124 (239)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred             CHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHH
Confidence            34444445555556778999999999999999999987546899999999999999999999888877799999987641


Q ss_pred             CCCCC-------------C-C-CCCCEEEEeCCCh--hchHHHHHhcccCCCEEEEEe
Q 026506          173 GFPDE-------------F-S-GLADSIFLDLPQP--WLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       173 ~~~~~-------------~-~-~~~D~v~~~~~~~--~~~l~~~~~~L~~gG~l~~~~  213 (237)
                       ++..             . . +.||+|+++....  ..+++.+.+.|+|||++++..
T Consensus       125 -~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          125 -LQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             -HHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             -HHHHHhhcccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence             1100             0 1 4699999886432  367899999999999999764

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.49  E-value=4e-14  Score=114.13  Aligned_cols=123  Identities=14%  Similarity=0.130  Sum_probs=94.0

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--CC--------CCcEEEEEccccCCCCCC
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT--GV--------SSFVTVGVRDIQGQGFPD  176 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~--------~~~i~~~~~d~~~~~~~~  176 (237)
                      .++.+|||+|||+|.++..+++.  +..+++++|+++.+++.|++++ ..  ++        ..++++..+|+.+. ++.
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~--~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~-l~~  149 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEF-IKN  149 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHH-HHH
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHH-hcc
Confidence            45689999999999999998876  4579999999999999999987 33  22        34599999998641 111


Q ss_pred             CCCCCCCEEEEeCCCh---------hchHHHHHhcccCCCEEEEEeC----CHHHHHHHHHHHHhcCccccc
Q 026506          177 EFSGLADSIFLDLPQP---------WLAIPSAKKMLKQDGILCSFSP----CIEQVQRSCESLRLNFTGKES  235 (237)
Q Consensus       177 ~~~~~~D~v~~~~~~~---------~~~l~~~~~~L~~gG~l~~~~~----~~~~~~~~~~~l~~~f~~v~~  235 (237)
                        .+.||+|++|.+.+         .++++.+.+.|+|||++++...    .......+.+.+++.|..++.
T Consensus       150 --~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~  219 (281)
T 1mjf_A          150 --NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYY  219 (281)
T ss_dssp             --CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEE
T ss_pred             --cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEE
Confidence              26799999998743         4578999999999999997642    234556666777766776553

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.49  E-value=1.6e-13  Score=106.06  Aligned_cols=109  Identities=22%  Similarity=0.142  Sum_probs=87.0

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      +...+...++.+|||+|||+|.++..++...   .+++++|+++.+++.++++....+   ++++..+|+.+.. +.   
T Consensus        43 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~-~~---  112 (216)
T 3ofk_A           43 LRLSLSSGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFS-TA---  112 (216)
T ss_dssp             HHHHTTTSSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCC-CS---
T ss_pred             HHHHcccCCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCC-CC---
Confidence            3345667788999999999999999888762   689999999999999999875433   4999999998633 33   


Q ss_pred             CCCCEEEEeC-----CCh---hchHHHHHhcccCCCEEEEEeCCHHH
Q 026506          180 GLADSIFLDL-----PQP---WLAIPSAKKMLKQDGILCSFSPCIEQ  218 (237)
Q Consensus       180 ~~~D~v~~~~-----~~~---~~~l~~~~~~L~~gG~l~~~~~~~~~  218 (237)
                      +.||+|++..     +++   ..+++++.+.|+|||.+++..+....
T Consensus       113 ~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  159 (216)
T 3ofk_A          113 ELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDAT  159 (216)
T ss_dssp             CCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHH
T ss_pred             CCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCCCc
Confidence            7899998753     333   35699999999999999987765544

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.49  E-value=1.5e-13  Score=113.68  Aligned_cols=105  Identities=19%  Similarity=0.171  Sum_probs=85.4

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      +...+...++.+|||+|||+|.++..+++.  +..+|+++|+++ +++.|+++++.+++.+++++..+|+.+..++.   
T Consensus        56 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~---  129 (340)
T 2fyt_A           56 IYQNPHIFKDKVVLDVGCGTGILSMFAAKA--GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPV---  129 (340)
T ss_dssp             HHHCGGGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSC---
T ss_pred             HHhhhhhcCCCEEEEeeccCcHHHHHHHHc--CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCC---
Confidence            444455678899999999999999888876  346999999996 99999999998888666999999998655554   


Q ss_pred             CCCCEEEEeCC--------ChhchHHHHHhcccCCCEEE
Q 026506          180 GLADSIFLDLP--------QPWLAIPSAKKMLKQDGILC  210 (237)
Q Consensus       180 ~~~D~v~~~~~--------~~~~~l~~~~~~L~~gG~l~  210 (237)
                      +.||+|+.+..        ....++..+.+.|||||+++
T Consensus       130 ~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          130 EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             SCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             CcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            68999997651        12347888899999999987

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.49  E-value=3.7e-13  Score=112.20  Aligned_cols=108  Identities=15%  Similarity=0.217  Sum_probs=89.7

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .++..++..++.+|||+|||+|.++..+++.. +..+++++|+ +.+++.+++++...+..+++++..+|+.+..++   
T Consensus       181 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---  255 (359)
T 1x19_A          181 LLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP---  255 (359)
T ss_dssp             HHHHHCCCTTCCEEEEESCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCC---
T ss_pred             HHHHhcCCCCCCEEEEECCcccHHHHHHHHHC-CCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCC---
Confidence            46667777888999999999999999999885 5579999999 999999999998888777799999999864333   


Q ss_pred             CCCCCEEEEeC-----CC--hhchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFLDL-----PQ--PWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~~-----~~--~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                        .+|+|++..     ++  ...+++++.+.|+|||++++..
T Consensus       256 --~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e  295 (359)
T 1x19_A          256 --EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD  295 (359)
T ss_dssp             --CCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             --CCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence              349998643     33  3467999999999999998775

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.49  E-value=4.3e-13  Score=112.37  Aligned_cols=106  Identities=13%  Similarity=0.089  Sum_probs=84.5

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..++.+|||+| |+|.++..++.. ++..+|+++|+++.+++.|+++++.+++. ++++..+|+.+ .++....+.||+|
T Consensus       170 ~~~~~~VLDlG-G~G~~~~~la~~-~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~-~l~~~~~~~fD~V  245 (373)
T 2qm3_A          170 DLENKDIFVLG-DDDLTSIALMLS-GLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRK-PLPDYALHKFDTF  245 (373)
T ss_dssp             CSTTCEEEEES-CTTCHHHHHHHH-TCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTS-CCCTTTSSCBSEE
T ss_pred             CCCCCEEEEEC-CCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhh-hchhhccCCccEE
Confidence            44688999999 999999988776 44579999999999999999999988876 49999999975 2332112579999


Q ss_pred             EEeCCCh----hchHHHHHhcccCCCEEEEEeCC
Q 026506          186 FLDLPQP----WLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       186 ~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      ++|+|..    ..+++++.+.|+|||++++++.+
T Consensus       246 i~~~p~~~~~~~~~l~~~~~~LkpgG~~~~~~~~  279 (373)
T 2qm3_A          246 ITDPPETLEAIRAFVGRGIATLKGPRCAGYFGIT  279 (373)
T ss_dssp             EECCCSSHHHHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred             EECCCCchHHHHHHHHHHHHHcccCCeEEEEEEe
Confidence            9998743    25788999999999965445443

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.48  E-value=1e-13  Score=115.13  Aligned_cols=100  Identities=20%  Similarity=0.231  Sum_probs=84.3

Q ss_pred             CCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       105 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      ...++.+|||+|||+|.++..+++.  +..+|+++|++ ++++.|++++..+++.+++++..+|+.+..++.   +.||+
T Consensus        63 ~~~~~~~VLDvGcG~G~~~~~la~~--g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~fD~  136 (349)
T 3q7e_A           63 HLFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPV---EKVDI  136 (349)
T ss_dssp             HHHTTCEEEEESCTTSHHHHHHHHT--TCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSS---SCEEE
T ss_pred             ccCCCCEEEEEeccchHHHHHHHHC--CCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCC---CceEE
Confidence            4567899999999999999888876  45799999999 599999999999998888999999998755554   78999


Q ss_pred             EEEeCC--------ChhchHHHHHhcccCCCEEE
Q 026506          185 IFLDLP--------QPWLAIPSAKKMLKQDGILC  210 (237)
Q Consensus       185 v~~~~~--------~~~~~l~~~~~~L~~gG~l~  210 (237)
                      |+.+..        ....+++.+.+.|||||+++
T Consensus       137 Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li  170 (349)
T 3q7e_A          137 IISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF  170 (349)
T ss_dssp             EEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEccccccccCchhHHHHHHHHHHhCCCCCEEc
Confidence            997542        33457788899999999985

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.48  E-value=6e-14  Score=114.05  Aligned_cols=111  Identities=17%  Similarity=0.120  Sum_probs=85.9

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC--CcEEEEEccccCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS--SFVTVGVRDIQGQGFPD  176 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~i~~~~~d~~~~~~~~  176 (237)
                      .++..+...++ +|||+|||+|.++..++..   ..+|+++|+++.+++.|++++...+..  .++++..+|+.+..+ .
T Consensus        74 ~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~  148 (299)
T 3g2m_A           74 EFATRTGPVSG-PVLELAAGMGRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-D  148 (299)
T ss_dssp             HHHHHHCCCCS-CEEEETCTTTTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-S
T ss_pred             HHHHhhCCCCC-cEEEEeccCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-C
Confidence            35555555444 9999999999999888876   368999999999999999998766531  349999999986433 2


Q ss_pred             CCCCCCCEEEEe-----CCC---hhchHHHHHhcccCCCEEEEEeCCHH
Q 026506          177 EFSGLADSIFLD-----LPQ---PWLAIPSAKKMLKQDGILCSFSPCIE  217 (237)
Q Consensus       177 ~~~~~~D~v~~~-----~~~---~~~~l~~~~~~L~~gG~l~~~~~~~~  217 (237)
                         +.||+|++.     ...   ...+++++.+.|+|||++++..+...
T Consensus       149 ---~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  194 (299)
T 3g2m_A          149 ---KRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSE  194 (299)
T ss_dssp             ---CCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred             ---CCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCc
Confidence               789988753     222   25689999999999999998765443

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.48  E-value=1.7e-13  Score=107.64  Aligned_cols=98  Identities=22%  Similarity=0.247  Sum_probs=81.1

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      +.++.+|||+|||+|.++..++..   ..+++++|+++.+++.++++.    ...++++..+|+.+.+++.   +.||+|
T Consensus        51 ~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~~~~---~~fD~v  120 (242)
T 3l8d_A           51 VKKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSLPFEN---EQFEAI  120 (242)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBCSSCT---TCEEEE
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcCCCCC---CCccEE
Confidence            357889999999999999988886   368999999999999998863    2234999999998655544   789999


Q ss_pred             EEe-----CCChhchHHHHHhcccCCCEEEEEe
Q 026506          186 FLD-----LPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       186 ~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ++.     .+++..+++++.+.|+|||++++..
T Consensus       121 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~  153 (242)
T 3l8d_A          121 MAINSLEWTEEPLRALNEIKRVLKSDGYACIAI  153 (242)
T ss_dssp             EEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEcChHhhccCHHHHHHHHHHHhCCCeEEEEEE
Confidence            864     3466679999999999999999776

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.48  E-value=3.3e-13  Score=104.58  Aligned_cols=104  Identities=21%  Similarity=0.205  Sum_probs=83.0

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ++..+...++.+|||+|||+|.++..++..   ..+++++|+++.+++.++++..     .++++..+|+.+..++    
T Consensus        37 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~~----  104 (220)
T 3hnr_A           37 ILEDVVNKSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEVP----  104 (220)
T ss_dssp             HHHHHHHTCCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCCC----
T ss_pred             HHHHhhccCCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCCC----
Confidence            555555668899999999999999998876   3689999999999999998743     3388899998763332    


Q ss_pred             CCCCEEEEeC-----CChhc--hHHHHHhcccCCCEEEEEeCC
Q 026506          180 GLADSIFLDL-----PQPWL--AIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       180 ~~~D~v~~~~-----~~~~~--~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      +.||+|++..     +++..  +++++.+.|||||.+++..+.
T Consensus       105 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  147 (220)
T 3hnr_A          105 TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTI  147 (220)
T ss_dssp             SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred             CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence            6799998753     33333  899999999999999987543

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.47  E-value=4.5e-12  Score=102.22  Aligned_cols=105  Identities=20%  Similarity=0.216  Sum_probs=85.4

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ++..+...++.+|||+|||+|.++..++..   ..+|+++|+++.+++.+++++...+.  ++++..+|+.+... .   
T Consensus       112 ~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-~---  182 (286)
T 3m70_A          112 VVDAAKIISPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI-Q---  182 (286)
T ss_dssp             HHHHHHHSCSCEEEEESCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC-C---
T ss_pred             HHHHhhccCCCcEEEECCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc-c---
Confidence            444444457899999999999999998877   35899999999999999999988876  49999999986433 2   


Q ss_pred             CCCCEEEEeCC-------ChhchHHHHHhcccCCCEEEEEe
Q 026506          180 GLADSIFLDLP-------QPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       180 ~~~D~v~~~~~-------~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +.||+|+++..       ....+++++.+.|+|||.++++.
T Consensus       183 ~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          183 ENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             SCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            78999997542       22368999999999999977664

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.47  E-value=8.9e-14  Score=107.20  Aligned_cols=116  Identities=18%  Similarity=0.136  Sum_probs=90.9

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      +.++.+|||+|||+|.++..++..   ..+++++|+++.+++.++++.   +    +.+..+|+.... +.   +.||+|
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~---~----~~~~~~d~~~~~-~~---~~fD~v  106 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRL---G----RPVRTMLFHQLD-AI---DAYDAV  106 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH---T----SCCEECCGGGCC-CC---SCEEEE
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc---C----CceEEeeeccCC-CC---CcEEEE
Confidence            467889999999999999988876   368999999999999999975   2    556778887533 32   789999


Q ss_pred             EEeC-----C--ChhchHHHHHhcccCCCEEEEEeCCHH--------------HHHHHHHHHHh-c-Cccccc
Q 026506          186 FLDL-----P--QPWLAIPSAKKMLKQDGILCSFSPCIE--------------QVQRSCESLRL-N-FTGKES  235 (237)
Q Consensus       186 ~~~~-----~--~~~~~l~~~~~~L~~gG~l~~~~~~~~--------------~~~~~~~~l~~-~-f~~v~~  235 (237)
                      ++..     +  +...+++++.+.|+|||++++..+...              ..+++.+.+++ | |..+++
T Consensus       107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~  179 (211)
T 3e23_A          107 WAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAV  179 (211)
T ss_dssp             EECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEE
T ss_pred             EecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEE
Confidence            8753     2  334689999999999999987754322              35677778887 8 987654

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.47  E-value=2.7e-13  Score=115.61  Aligned_cols=109  Identities=23%  Similarity=0.261  Sum_probs=90.1

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC--CCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--FPD  176 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~  176 (237)
                      .+...+++.++.+|||+|||+|+.+.+++...+ .++++++|+++.+++.+++++...+..  +.+..+|+....  ++.
T Consensus       237 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~~~~~l~~~~~~~~~~g~~--~~~~~~D~~~~~~~~~~  313 (429)
T 1sqg_A          237 GCMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGRYPSQWCGE  313 (429)
T ss_dssp             THHHHHCCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTCC--CEEEECCTTCTHHHHTT
T ss_pred             HHHHHcCCCCcCeEEEECCCchHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHHcCCC--eEEEeCchhhchhhccc
Confidence            356677889999999999999999999999863 379999999999999999999988863  678889987522  222


Q ss_pred             CCCCCCCEEEEeCCCh---------------------------hchHHHHHhcccCCCEEEEEe
Q 026506          177 EFSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       177 ~~~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~gG~l~~~~  213 (237)
                         +.||+|++|+|+.                           ..+++++.+.|||||++++..
T Consensus       314 ---~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvyst  374 (429)
T 1sqg_A          314 ---QQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT  374 (429)
T ss_dssp             ---CCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             ---CCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence               5799999998743                           256889999999999998543

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.47  E-value=1.3e-13  Score=111.31  Aligned_cols=127  Identities=16%  Similarity=0.157  Sum_probs=96.3

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEccccCCCCCCCCCCCC
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG--V-SSFVTVGVRDIQGQGFPDEFSGLA  182 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~~~~~~~~~~  182 (237)
                      ..++.+|||+|||+|..+..+++.. +..+++++|+++.+++.|++++...+  . ..++++..+|+.+. .+. ..+.|
T Consensus        76 ~~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~-l~~-~~~~f  152 (283)
T 2i7c_A           76 SKEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF-LEN-VTNTY  152 (283)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH-HHH-CCSCE
T ss_pred             CCCCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHH-HHh-CCCCc
Confidence            3456899999999999999988763 45799999999999999999875432  1 24599999998641 111 12679


Q ss_pred             CEEEEeCCCh---------hchHHHHHhcccCCCEEEEEeCC----HHHHHHHHHHHHhcCccccc
Q 026506          183 DSIFLDLPQP---------WLAIPSAKKMLKQDGILCSFSPC----IEQVQRSCESLRLNFTGKES  235 (237)
Q Consensus       183 D~v~~~~~~~---------~~~l~~~~~~L~~gG~l~~~~~~----~~~~~~~~~~l~~~f~~v~~  235 (237)
                      |+|++|...+         .++++.+.+.|+|||++++...+    ......+.+.+++.|..+++
T Consensus       153 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~  218 (283)
T 2i7c_A          153 DVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEY  218 (283)
T ss_dssp             EEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEE
T ss_pred             eEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHHCCceEE
Confidence            9999987543         36789999999999999987542    34566777777777877654

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.47  E-value=2.5e-13  Score=113.91  Aligned_cols=104  Identities=25%  Similarity=0.282  Sum_probs=86.2

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      +.......++.+|||+|||+|.++..+++.  +..+|+++|++ .+++.|++++..+++.+++++..+|+.+..++    
T Consensus        55 i~~~~~~~~~~~VLDlGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----  127 (376)
T 3r0q_C           55 VFQNKHHFEGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP----  127 (376)
T ss_dssp             HHTTTTTTTTCEEEEESCTTTHHHHHHHHT--TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS----
T ss_pred             HHhccccCCCCEEEEeccCcCHHHHHHHhc--CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC----
Confidence            344456778999999999999999888876  34699999999 99999999999999888899999999864443    


Q ss_pred             CCCCEEEEeCC--------ChhchHHHHHhcccCCCEEE
Q 026506          180 GLADSIFLDLP--------QPWLAIPSAKKMLKQDGILC  210 (237)
Q Consensus       180 ~~~D~v~~~~~--------~~~~~l~~~~~~L~~gG~l~  210 (237)
                      +.||+|+++..        ....+++.+.+.|+|||.++
T Consensus       128 ~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li  166 (376)
T 3r0q_C          128 EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMY  166 (376)
T ss_dssp             SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEE
T ss_pred             CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEE
Confidence            67999998652        23457888899999999997

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.47  E-value=2.5e-13  Score=113.86  Aligned_cols=110  Identities=21%  Similarity=0.179  Sum_probs=88.0

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..++.+|||+|||+|.++..++..   ..+|+++|+++.+++.+++++..++..  +++..+|+.+...+.   +.||+|
T Consensus       231 ~~~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis~~al~~A~~n~~~~~~~--v~~~~~D~~~~~~~~---~~fD~I  302 (381)
T 3dmg_A          231 GVRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEANALK--AQALHSDVDEALTEE---ARFDII  302 (381)
T ss_dssp             TTTTCEEEEETCTTSTTHHHHHHT---TCEEEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTSCTT---CCEEEE
T ss_pred             CCCCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEEcchhhccccC---CCeEEE
Confidence            347889999999999999998876   369999999999999999999988754  788999997533332   689999


Q ss_pred             EEeCCCh----------hchHHHHHhcccCCCEEEEEeCCHHHHHHHH
Q 026506          186 FLDLPQP----------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSC  223 (237)
Q Consensus       186 ~~~~~~~----------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~  223 (237)
                      +++++-.          ..+++++.+.|+|||++++..........++
T Consensus       303 i~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l  350 (381)
T 3dmg_A          303 VTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLL  350 (381)
T ss_dssp             EECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHH
T ss_pred             EECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHH
Confidence            9986533          2578999999999999998765443333333

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.47  E-value=8.7e-13  Score=110.12  Aligned_cols=102  Identities=13%  Similarity=0.127  Sum_probs=84.3

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC--CCCCCCCCCCCE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDEFSGLADS  184 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~~D~  184 (237)
                      ....+|||+|||+|.++..+++.. +..+++++|+ +.+++.|++++...+..+++++..+|+.+.  +++    ++||+
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p----~~~D~  251 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP----TGFDA  251 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC----CCCSE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC----CCcCE
Confidence            466899999999999999999885 5679999999 999999999988777766799999999863  233    57999


Q ss_pred             EEEeC-----CCh--hchHHHHHhcccCCCEEEEEeC
Q 026506          185 IFLDL-----PQP--WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       185 v~~~~-----~~~--~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      |++..     ++.  ..+++++.+.|+|||++++..+
T Consensus       252 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (363)
T 3dp7_A          252 VWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMET  288 (363)
T ss_dssp             EEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             EEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEee
Confidence            98743     222  2579999999999999998653

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.47  E-value=1.9e-13  Score=112.54  Aligned_cols=106  Identities=17%  Similarity=0.081  Sum_probs=84.5

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEccccCCCCCCC--CCCCC
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS-FVTVGVRDIQGQGFPDE--FSGLA  182 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~~~~--~~~~~  182 (237)
                      ..++.+|||+|||+|.+++.++..  + .+|+++|+|+.+++.|+++++.+++.+ ++++..+|+.+. .+..  ....|
T Consensus       151 ~~~~~~VLDlgcGtG~~sl~la~~--g-a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~-l~~~~~~~~~f  226 (332)
T 2igt_A          151 ADRPLKVLNLFGYTGVASLVAAAA--G-AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKF-IQREERRGSTY  226 (332)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHT--T-CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHH-HHHHHHHTCCB
T ss_pred             cCCCCcEEEcccccCHHHHHHHHc--C-CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHH-HHHHHhcCCCc
Confidence            356789999999999999988875  3 499999999999999999999988865 489999998751 1100  01579


Q ss_pred             CEEEEeCCC---------------hhchHHHHHhcccCCCEEEEEeCC
Q 026506          183 DSIFLDLPQ---------------PWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       183 D~v~~~~~~---------------~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      |+|++|+|.               ...+++.+.+.|+|||.+++...+
T Consensus       227 D~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~  274 (332)
T 2igt_A          227 DIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY  274 (332)
T ss_dssp             SEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred             eEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence            999999873               235788899999999997766544

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.47  E-value=1.3e-13  Score=107.55  Aligned_cols=102  Identities=19%  Similarity=0.163  Sum_probs=78.2

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCC-HHHHHHH---HHHHHHcCCCCcEEEEEccccCCCCCCCCCCC
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFH-EQRAASA---REDFERTGVSSFVTVGVRDIQGQGFPDEFSGL  181 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~-~~~~~~a---~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  181 (237)
                      ..++.+|||+|||+|.++..++.. .+..+|+++|+| +.+++.|   +++....++.+ +.+..+|+..  ++....+.
T Consensus        22 ~~~~~~vLDiGCG~G~~~~~la~~-~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~-v~~~~~d~~~--l~~~~~d~   97 (225)
T 3p2e_A           22 GQFDRVHIDLGTGDGRNIYKLAIN-DQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSN-VVFVIAAAES--LPFELKNI   97 (225)
T ss_dssp             TTCSEEEEEETCTTSHHHHHHHHT-CTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSS-EEEECCBTTB--CCGGGTTC
T ss_pred             CCCCCEEEEEeccCcHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCC-eEEEEcCHHH--hhhhccCe
Confidence            367889999999999999988865 356899999999 6666665   77776677766 9999999875  33311145


Q ss_pred             CCEEEEeCCCh----------hchHHHHHhcccCCCEEEE
Q 026506          182 ADSIFLDLPQP----------WLAIPSAKKMLKQDGILCS  211 (237)
Q Consensus       182 ~D~v~~~~~~~----------~~~l~~~~~~L~~gG~l~~  211 (237)
                      +|.++++.+.+          ..+++++.+.|||||++++
T Consensus        98 v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A           98 ADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             EEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             EEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            67777665432          3478999999999999997

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.47  E-value=1.3e-13  Score=105.46  Aligned_cols=115  Identities=15%  Similarity=0.085  Sum_probs=84.5

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-----------
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAP-TGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-----------  173 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------  173 (237)
                      +.++.+|||+|||+|.++..+++..++ ..+++++|+++..           ...+ +++..+|+.+..           
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~-v~~~~~d~~~~~~~~~~~~~~i~   87 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPN-VYFIQGEIGKDNMNNIKNINYID   87 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTT-CEEEECCTTTTSSCCC-------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCC-ceEEEccccchhhhhhccccccc
Confidence            578899999999999999999988742 5899999999831           2233 788899987533           


Q ss_pred             --------------CCCCCCCCCCEEEEeCCChh----------------chHHHHHhcccCCCEEEEEeCCHHHHHHHH
Q 026506          174 --------------FPDEFSGLADSIFLDLPQPW----------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSC  223 (237)
Q Consensus       174 --------------~~~~~~~~~D~v~~~~~~~~----------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~  223 (237)
                                    ++.   +.||+|+++...++                .+++.+.+.|+|||.+++..........+.
T Consensus        88 ~~~~~~~~~~~~~~~~~---~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~  164 (201)
T 2plw_A           88 NMNNNSVDYKLKEILQD---KKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLK  164 (201)
T ss_dssp             ----CHHHHHHHHHHTT---CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHH
T ss_pred             cccchhhHHHHHhhcCC---CcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHH
Confidence                          222   57999998754221                267889999999999987554444556677


Q ss_pred             HHHHhcCccccc
Q 026506          224 ESLRLNFTGKES  235 (237)
Q Consensus       224 ~~l~~~f~~v~~  235 (237)
                      +.++..|..++.
T Consensus       165 ~~l~~~f~~v~~  176 (201)
T 2plw_A          165 TYLKGMFQLVHT  176 (201)
T ss_dssp             HHHHTTEEEEEE
T ss_pred             HHHHHHHheEEE
Confidence            777766665543

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.47  E-value=1.3e-13  Score=112.85  Aligned_cols=125  Identities=15%  Similarity=0.132  Sum_probs=95.0

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--C-C-CCcEEEEEccccCC-CCCCCCCCC
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT--G-V-SSFVTVGVRDIQGQ-GFPDEFSGL  181 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~-~-~~~i~~~~~d~~~~-~~~~~~~~~  181 (237)
                      .++.+|||+|||+|.++..+++.. +..+++++|+++.+++.|++++...  + . ..++++..+|+.+. ....   +.
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~---~~  151 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTE---ER  151 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCC---CC
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcC---CC
Confidence            456899999999999999988763 4579999999999999999987641  2 1 34599999998741 1122   67


Q ss_pred             CCEEEEeCCChh------------chHHHHHhcccCCCEEEEEe--CC---HHHHHHHHHHHHhcCccccc
Q 026506          182 ADSIFLDLPQPW------------LAIPSAKKMLKQDGILCSFS--PC---IEQVQRSCESLRLNFTGKES  235 (237)
Q Consensus       182 ~D~v~~~~~~~~------------~~l~~~~~~L~~gG~l~~~~--~~---~~~~~~~~~~l~~~f~~v~~  235 (237)
                      ||+|+++.+.++            ++++.+.+.|+|||++++..  +.   .+....+.+.+++.|..+++
T Consensus       152 fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~  222 (314)
T 1uir_A          152 YDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRS  222 (314)
T ss_dssp             EEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEE
T ss_pred             ccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCCceEE
Confidence            999999876543            56999999999999998764  22   24466677777777876654

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.46  E-value=3.9e-13  Score=106.89  Aligned_cols=100  Identities=19%  Similarity=0.148  Sum_probs=82.3

Q ss_pred             CCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       105 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      ...++.+|||+|||+|.++..++..   ..+++++|+++.+++.+++++ .... .++++..+|+.+.+++.   +.||+
T Consensus        36 ~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-~~~~-~~~~~~~~d~~~~~~~~---~~fD~  107 (263)
T 2yqz_A           36 PKGEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKI-AGVD-RKVQVVQADARAIPLPD---ESVHG  107 (263)
T ss_dssp             CSSSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHT-TTSC-TTEEEEESCTTSCCSCT---TCEEE
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHh-hccC-CceEEEEcccccCCCCC---CCeeE
Confidence            5678899999999999999888875   368999999999999999986 2223 34999999997654444   68999


Q ss_pred             EEEeC-----CChhchHHHHHhcccCCCEEEEE
Q 026506          185 IFLDL-----PQPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       185 v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                      |++..     +++..+++++.+.|+|||.+++.
T Consensus       108 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          108 VIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             EEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence            98754     35567899999999999998865

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.46  E-value=5.1e-14  Score=111.98  Aligned_cols=93  Identities=18%  Similarity=0.172  Sum_probs=76.7

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL  187 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~  187 (237)
                      .+.+|||+|||+|.++..++..   ..+|+++|+|+.+++.|++      . .++++..+|+.+.++++   +.||+|++
T Consensus        39 ~~~~vLDvGcGtG~~~~~l~~~---~~~v~gvD~s~~ml~~a~~------~-~~v~~~~~~~e~~~~~~---~sfD~v~~  105 (257)
T 4hg2_A           39 ARGDALDCGCGSGQASLGLAEF---FERVHAVDPGEAQIRQALR------H-PRVTYAVAPAEDTGLPP---ASVDVAIA  105 (257)
T ss_dssp             CSSEEEEESCTTTTTHHHHHTT---CSEEEEEESCHHHHHTCCC------C-TTEEEEECCTTCCCCCS---SCEEEEEE
T ss_pred             CCCCEEEEcCCCCHHHHHHHHh---CCEEEEEeCcHHhhhhhhh------c-CCceeehhhhhhhcccC---CcccEEEE
Confidence            4579999999999999888876   3689999999999987754      1 23999999998766766   88999986


Q ss_pred             eC----CChhchHHHHHhcccCCCEEEEEe
Q 026506          188 DL----PQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       188 ~~----~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ..    .++..+++++.++|||||+|+++.
T Consensus       106 ~~~~h~~~~~~~~~e~~rvLkpgG~l~~~~  135 (257)
T 4hg2_A          106 AQAMHWFDLDRFWAELRRVARPGAVFAAVT  135 (257)
T ss_dssp             CSCCTTCCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeehhHhhHHHHHHHHHHHcCCCCEEEEEE
Confidence            43    345578999999999999998765

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.46  E-value=7e-14  Score=114.24  Aligned_cols=126  Identities=18%  Similarity=0.140  Sum_probs=93.3

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEccccCCCCCCCCCCCCC
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT--GV-SSFVTVGVRDIQGQGFPDEFSGLAD  183 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~~~~~~~~~~~D  183 (237)
                      ..+.+|||+|||+|..+..+++.. +..+++++|+++.+++.|++++...  +. ..++++..+|+.+. ++. ..+.||
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~-l~~-~~~~fD  183 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEF-LKN-HKNEFD  183 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHH-HHH-CTTCEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHH-HHh-cCCCce
Confidence            345899999999999999988763 4579999999999999999987643  22 34599999998641 111 126799


Q ss_pred             EEEEeCCCh---------hchHHHHHhcccCCCEEEEEeCC----HHHHHHHHHHHHhcCccccc
Q 026506          184 SIFLDLPQP---------WLAIPSAKKMLKQDGILCSFSPC----IEQVQRSCESLRLNFTGKES  235 (237)
Q Consensus       184 ~v~~~~~~~---------~~~l~~~~~~L~~gG~l~~~~~~----~~~~~~~~~~l~~~f~~v~~  235 (237)
                      +|++|.+.+         .++++.+.+.|+|||++++....    ......+.+.+++.|..+++
T Consensus       184 ~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~vF~~v~~  248 (314)
T 2b2c_A          184 VIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTY  248 (314)
T ss_dssp             EEEECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEE
T ss_pred             EEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHHCCcceE
Confidence            999987543         46899999999999999976522    24456666677766876654

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.46  E-value=3.1e-13  Score=103.39  Aligned_cols=100  Identities=18%  Similarity=0.090  Sum_probs=81.8

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      .++ +|||+|||+|.++..++..   ..+++++|+++.+++.++++....+.  ++.+..+|+.+..++.   +.||+|+
T Consensus        29 ~~~-~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~---~~fD~v~   99 (202)
T 2kw5_A           29 PQG-KILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFDIVA---DAWEGIV   99 (202)
T ss_dssp             CSS-EEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBSCCT---TTCSEEE
T ss_pred             CCC-CEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcCCCc---CCccEEE
Confidence            456 9999999999999888775   35999999999999999999887765  3899999987654444   6899998


Q ss_pred             EeCC-----ChhchHHHHHhcccCCCEEEEEeCC
Q 026506          187 LDLP-----QPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       187 ~~~~-----~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      +...     ....+++++.+.|+|||++++..+.
T Consensus       100 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  133 (202)
T 2kw5_A          100 SIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFA  133 (202)
T ss_dssp             EECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEEC
T ss_pred             EEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            7532     2346899999999999999987643

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.46  E-value=3.9e-14  Score=105.48  Aligned_cols=100  Identities=18%  Similarity=0.209  Sum_probs=81.1

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ++..+...++.+|||+|||+|.++..++...   .+++++|+++.+++.++++     . .++++...| .  .++.   
T Consensus         9 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-----~-~~v~~~~~d-~--~~~~---   73 (170)
T 3i9f_A            9 YLPNIFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEK-----F-DSVITLSDP-K--EIPD---   73 (170)
T ss_dssp             THHHHHSSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHH-----C-TTSEEESSG-G--GSCT---
T ss_pred             HHHhcCcCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHh-----C-CCcEEEeCC-C--CCCC---
Confidence            4555567888999999999999999888774   4899999999999999987     2 238888888 2  2444   


Q ss_pred             CCCCEEEEeC-----CChhchHHHHHhcccCCCEEEEEeC
Q 026506          180 GLADSIFLDL-----PQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       180 ~~~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +.||+|++..     +++..+++++.+.|+|||++++...
T Consensus        74 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  113 (170)
T 3i9f_A           74 NSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDW  113 (170)
T ss_dssp             TCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEc
Confidence            7899998753     3556789999999999999998754

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.46  E-value=1.4e-13  Score=108.31  Aligned_cols=96  Identities=17%  Similarity=0.163  Sum_probs=77.3

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC--CCCCCCCCCCC
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDEFSGLAD  183 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~~D  183 (237)
                      ..++.+|||+|||+|.++..++..   ..+++++|+++.+++.++++         +++...|+.+.  +++.   +.||
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~~~---~~fD  103 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEE---GIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSLPD---KYLD  103 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHH---TCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTSCT---TCBS
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhcCC---CCee
Confidence            467899999999999999888876   35799999999999998874         56677777642  4454   7899


Q ss_pred             EEEEe-----CCCh--hchHHHHHhcccCCCEEEEEeCCH
Q 026506          184 SIFLD-----LPQP--WLAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       184 ~v~~~-----~~~~--~~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                      +|++.     .+.+  ..+++++.+.|||||++++..+..
T Consensus       104 ~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  143 (240)
T 3dli_A          104 GVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNP  143 (240)
T ss_dssp             EEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECT
T ss_pred             EEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence            99874     3333  578999999999999999887654

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.45  E-value=2.9e-13  Score=102.55  Aligned_cols=117  Identities=17%  Similarity=0.111  Sum_probs=91.1

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      +.++.+|||+|||+|.++..++..   ..+++++|+++.+++.++++.     .+ +.+...|+.+..++.   +.||+|
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~-----~~-~~~~~~d~~~~~~~~---~~~D~i  111 (195)
T 3cgg_A           44 APRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDF-----PE-ARWVVGDLSVDQISE---TDFDLI  111 (195)
T ss_dssp             SCTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHC-----TT-SEEEECCTTTSCCCC---CCEEEE
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhC-----CC-CcEEEcccccCCCCC---CceeEE
Confidence            467889999999999999988876   368999999999999999864     23 788899987644443   689999


Q ss_pred             EEeCC--------ChhchHHHHHhcccCCCEEEEEeCCHH--HHHHHHHHHHh-cCcccc
Q 026506          186 FLDLP--------QPWLAIPSAKKMLKQDGILCSFSPCIE--QVQRSCESLRL-NFTGKE  234 (237)
Q Consensus       186 ~~~~~--------~~~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~l~~-~f~~v~  234 (237)
                      +++.+        ....+++.+.+.|+|||.+++..+...  ..+++.+.+++ ||..++
T Consensus       112 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  171 (195)
T 3cgg_A          112 VSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELEN  171 (195)
T ss_dssp             EECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEE
T ss_pred             EECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEee
Confidence            98632        124679999999999999998765442  35677777777 776544

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.45  E-value=6.9e-13  Score=102.44  Aligned_cols=103  Identities=21%  Similarity=0.213  Sum_probs=83.1

Q ss_pred             HHHhcC-CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          100 VIMYLE-LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       100 ~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      ++..+. ..++.+|||+|||+|.++..++..   ..+++++|+++.+++.+++    .+..+ +++..+|+.+. ++.  
T Consensus        37 ~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~----~~~~~-~~~~~~d~~~~-~~~--  105 (218)
T 3ou2_A           37 ALERLRAGNIRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMIAEAGR----HGLDN-VEFRQQDLFDW-TPD--  105 (218)
T ss_dssp             HHHHHTTTTSCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHGG----GCCTT-EEEEECCTTSC-CCS--
T ss_pred             HHHHHhcCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHh----cCCCC-eEEEecccccC-CCC--
Confidence            444443 677889999999999999999887   3699999999999999988    45545 99999999754 443  


Q ss_pred             CCCCCEEEEeC-----CCh--hchHHHHHhcccCCCEEEEEeC
Q 026506          179 SGLADSIFLDL-----PQP--WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       179 ~~~~D~v~~~~-----~~~--~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                       +.||+|++..     +++  ..+++++.+.|+|||.+++..+
T Consensus       106 -~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  147 (218)
T 3ou2_A          106 -RQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV  147 (218)
T ss_dssp             -SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -CceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence             7899998753     232  5689999999999999987754

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.45  E-value=3.1e-13  Score=111.99  Aligned_cols=119  Identities=20%  Similarity=0.216  Sum_probs=93.1

Q ss_pred             HHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC
Q 026506           98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE  177 (237)
Q Consensus        98 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  177 (237)
                      ..++..+...++.+|||+|||+|.++..++... +..+++++|+++.+++.+++++..++..  .++...|+.+  ... 
T Consensus       186 ~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~--~~~-  259 (343)
T 2pjd_A          186 QLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHS-PKIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFS--EVK-  259 (343)
T ss_dssp             HHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHC-TTCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTT--TCC-
T ss_pred             HHHHHhcCcCCCCeEEEecCccCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEccccc--ccc-
Confidence            346677766677899999999999999998873 5568999999999999999999887764  5667888864  233 


Q ss_pred             CCCCCCEEEEeCCCh----------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHH
Q 026506          178 FSGLADSIFLDLPQP----------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCE  224 (237)
Q Consensus       178 ~~~~~D~v~~~~~~~----------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~  224 (237)
                        +.||+|+++.+-.          ..+++++.+.|+|||.+++..+.......+++
T Consensus       260 --~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~  314 (343)
T 2pjd_A          260 --GRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLD  314 (343)
T ss_dssp             --SCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTSSHHHHHH
T ss_pred             --CCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCCcHHHHH
Confidence              6899999987632          35799999999999999988754433333333

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.45  E-value=1.9e-12  Score=102.60  Aligned_cols=82  Identities=13%  Similarity=0.123  Sum_probs=66.1

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC---CCCCCCCCCCCE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ---GFPDEFSGLADS  184 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~~~~D~  184 (237)
                      ++.+|||+|||+|.++..++... +..+++++|+++.+++.|++++..+++.+++++..+|+.+.   .++....+.||+
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~  143 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF  143 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence            57899999999999998888775 34799999999999999999999888877799999997531   222100147999


Q ss_pred             EEEeCC
Q 026506          185 IFLDLP  190 (237)
Q Consensus       185 v~~~~~  190 (237)
                      |++++|
T Consensus       144 i~~npp  149 (254)
T 2h00_A          144 CMCNPP  149 (254)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999865

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.44  E-value=5.1e-13  Score=110.00  Aligned_cols=122  Identities=17%  Similarity=0.272  Sum_probs=92.3

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEccccCC--CCCCCCCC
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT--GV-SSFVTVGVRDIQGQ--GFPDEFSG  180 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~--~~~~~~~~  180 (237)
                      ...+.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++++...  ++ ..++++..+|+.+.  ..+.   +
T Consensus       118 ~~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~---~  193 (334)
T 1xj5_A          118 IPNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAE---G  193 (334)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCT---T
T ss_pred             CCCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccC---C
Confidence            4566899999999999999988763 4579999999999999999987653  33 24599999998641  1222   6


Q ss_pred             CCCEEEEeCCCh---------hchHHHHHhcccCCCEEEEEe--CCH--HHHHHHHHHHHhcCc
Q 026506          181 LADSIFLDLPQP---------WLAIPSAKKMLKQDGILCSFS--PCI--EQVQRSCESLRLNFT  231 (237)
Q Consensus       181 ~~D~v~~~~~~~---------~~~l~~~~~~L~~gG~l~~~~--~~~--~~~~~~~~~l~~~f~  231 (237)
                      .||+|++|...+         .++++.+.+.|+|||++++..  +..  .......+.+++.|.
T Consensus       194 ~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~  257 (334)
T 1xj5_A          194 SYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFK  257 (334)
T ss_dssp             CEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCS
T ss_pred             CccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCccccHHHHHHHHHHHHHhCc
Confidence            799999987532         357899999999999999763  222  234556666666676

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.44  E-value=9.3e-13  Score=110.28  Aligned_cols=122  Identities=16%  Similarity=0.082  Sum_probs=94.5

Q ss_pred             cccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC
Q 026506           94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG  173 (237)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~  173 (237)
                      +.....++... ..++.+|||+|||+|.+++.++... ...+++++|+++.+++.|++++...++.+.+++..+|+.+..
T Consensus       204 ~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~-~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~  281 (373)
T 3tm4_A          204 ASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRR-YSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLS  281 (373)
T ss_dssp             HHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTT-CCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGG
T ss_pred             HHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCC
Confidence            33344466666 7889999999999999999988763 335899999999999999999999998666999999998744


Q ss_pred             CCCCCCCCCCEEEEeCCCh-------------hchHHHHHhcccCCCEEEEEeCCHHHHHHH
Q 026506          174 FPDEFSGLADSIFLDLPQP-------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRS  222 (237)
Q Consensus       174 ~~~~~~~~~D~v~~~~~~~-------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~  222 (237)
                      .+.   +.||+|+.|+|-.             ..+++.+.+.|  +|.++++.+.....++.
T Consensus       282 ~~~---~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~~~~~~~~  338 (373)
T 3tm4_A          282 QYV---DSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTEKKAIEEA  338 (373)
T ss_dssp             GTC---SCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESCHHHHHHH
T ss_pred             ccc---CCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECCHHHHHHH
Confidence            443   6799999998711             24566777777  77777777766655543

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.43  E-value=5.4e-13  Score=109.86  Aligned_cols=105  Identities=22%  Similarity=0.250  Sum_probs=84.4

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      +...+...++.+|||+|||+|.++..+++.  +..+|+++|++ .+++.|++++..+++.+++++..+|+.+..++.   
T Consensus        30 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~---  103 (328)
T 1g6q_1           30 IIQNKDLFKDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPF---  103 (328)
T ss_dssp             HHHHHHHHTTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSS---
T ss_pred             HHhhHhhcCCCEEEEecCccHHHHHHHHHC--CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCC---
Confidence            333444567889999999999999888775  44699999999 699999999998888777999999998654543   


Q ss_pred             CCCCEEEEeCC--------ChhchHHHHHhcccCCCEEE
Q 026506          180 GLADSIFLDLP--------QPWLAIPSAKKMLKQDGILC  210 (237)
Q Consensus       180 ~~~D~v~~~~~--------~~~~~l~~~~~~L~~gG~l~  210 (237)
                      +.||+|+++..        ....++..+.+.|+|||+++
T Consensus       104 ~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1          104 PKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             SCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             CcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence            67999998643        12356778889999999987

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.43  E-value=1.1e-12  Score=109.24  Aligned_cols=110  Identities=21%  Similarity=0.271  Sum_probs=90.5

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .++..++..++.+|||+|||+|.++..+++.. +..+++++|+ +.+++.+++++...++.+++++..+|+.+ .++   
T Consensus       174 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~---  247 (360)
T 1tw3_A          174 APAAAYDWTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLP---  247 (360)
T ss_dssp             HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS---
T ss_pred             HHHHhCCCccCcEEEEeCCcCcHHHHHHHHhC-CCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCC---
Confidence            35666677888999999999999999999885 5578999999 99999999999888877669999999874 444   


Q ss_pred             CCCCCEEEEeC-----CCh--hchHHHHHhcccCCCEEEEEeCC
Q 026506          179 SGLADSIFLDL-----PQP--WLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       179 ~~~~D~v~~~~-----~~~--~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                       ..||+|++..     ++.  ..+++++.+.|+|||++++..+.
T Consensus       248 -~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          248 -RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             -SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             -CCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence             3499998743     332  36899999999999999987655

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.43  E-value=4.4e-13  Score=106.32  Aligned_cols=103  Identities=12%  Similarity=-0.063  Sum_probs=77.1

Q ss_pred             CCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH----------c------CCCCcEEEEEcc
Q 026506          105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER----------T------GVSSFVTVGVRD  168 (237)
Q Consensus       105 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~----------~------~~~~~i~~~~~d  168 (237)
                      ...++.+|||+|||+|..+..+++.   ..+|+++|+|+.+++.|+++...          .      ....++++.++|
T Consensus        65 ~~~~~~~vLD~GCG~G~~~~~La~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D  141 (252)
T 2gb4_A           65 KGQSGLRVFFPLCGKAIEMKWFADR---GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCS  141 (252)
T ss_dssp             TTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESC
T ss_pred             cCCCCCeEEEeCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECc
Confidence            4457889999999999999988876   35899999999999999876421          0      011349999999


Q ss_pred             ccCCCCCCCCCCCCCEEEEeC-----C--ChhchHHHHHhcccCCCEEEEE
Q 026506          169 IQGQGFPDEFSGLADSIFLDL-----P--QPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       169 ~~~~~~~~~~~~~~D~v~~~~-----~--~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                      +.+.....  .+.||+|+...     +  ....+++++.++|||||++++.
T Consensus       142 ~~~l~~~~--~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~  190 (252)
T 2gb4_A          142 IFDLPRAN--IGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA  190 (252)
T ss_dssp             TTTGGGGC--CCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cccCCccc--CCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            98643321  16799998532     1  2235799999999999998644

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.43  E-value=6e-13  Score=105.68  Aligned_cols=112  Identities=21%  Similarity=0.248  Sum_probs=81.0

Q ss_pred             cccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC
Q 026506           94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG  173 (237)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~  173 (237)
                      +.....++..+.+.++.+|||+|||+|.++..+++.   ..+|+++|+|+.+++.|++++...    .+.....+.. ..
T Consensus        31 ~~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD~S~~ml~~Ar~~~~~~----~v~~~~~~~~-~~  102 (261)
T 3iv6_A           31 PSDRENDIFLENIVPGSTVAVIGASTRFLIEKALER---GASVTVFDFSQRMCDDLAEALADR----CVTIDLLDIT-AE  102 (261)
T ss_dssp             CCHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTSSS----CCEEEECCTT-SC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhc----cceeeeeecc-cc
Confidence            445556788888899999999999999999999876   368999999999999999986533    1232223322 10


Q ss_pred             CCCCCCCCCCEEEEeCCC-------hhchHHHHHhcccCCCEEEEEeC
Q 026506          174 FPDEFSGLADSIFLDLPQ-------PWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       174 ~~~~~~~~~D~v~~~~~~-------~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .+....+.||+|+++..-       ...+++.+.++| |||++++..+
T Consensus       103 ~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~  149 (261)
T 3iv6_A          103 IPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK  149 (261)
T ss_dssp             CCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred             cccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence            111112689999987531       234789999999 9999986643

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.43  E-value=4.3e-13  Score=108.47  Aligned_cols=115  Identities=15%  Similarity=0.082  Sum_probs=88.7

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC---CcEEEEEccccCCC---
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS---SFVTVGVRDIQGQG---  173 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~i~~~~~d~~~~~---  173 (237)
                      +...+...++.+|||+|||+|.++..++..   ..+++++|+++.+++.|+++....+..   .++.+..+|+....   
T Consensus        49 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  125 (293)
T 3thr_A           49 LLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV  125 (293)
T ss_dssp             HHHHHHHTTCCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS
T ss_pred             HHHHhcccCCCEEEEecCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccc
Confidence            555555567899999999999999998876   259999999999999999876443321   23778888887533   


Q ss_pred             CCCCCCCCCCEEEEe------CCC-------hhchHHHHHhcccCCCEEEEEeCCHHHHH
Q 026506          174 FPDEFSGLADSIFLD------LPQ-------PWLAIPSAKKMLKQDGILCSFSPCIEQVQ  220 (237)
Q Consensus       174 ~~~~~~~~~D~v~~~------~~~-------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~  220 (237)
                      ++.   +.||+|++.      .++       ...+++++.+.|||||++++..+......
T Consensus       126 ~~~---~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~  182 (293)
T 3thr_A          126 PAG---DGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYIL  182 (293)
T ss_dssp             CCT---TCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECHHHHH
T ss_pred             ccC---CCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCHHHHh
Confidence            343   789999874      234       55789999999999999998888765443

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.43  E-value=9.8e-13  Score=109.17  Aligned_cols=105  Identities=21%  Similarity=0.227  Sum_probs=85.1

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ++..+...++.+|||+|||+|.++..+++.  +..+|+++|+++ +++.|+++++.+++.+++++..+|+.+..++    
T Consensus        42 i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~----  114 (348)
T 2y1w_A           42 ILQNHTDFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP----  114 (348)
T ss_dssp             HHHTGGGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS----
T ss_pred             HHhccccCCcCEEEEcCCCccHHHHHHHhC--CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC----
Confidence            555666678899999999999999888875  447999999996 8899999999888866699999999764333    


Q ss_pred             CCCCEEEEeCC-------ChhchHHHHHhcccCCCEEEE
Q 026506          180 GLADSIFLDLP-------QPWLAIPSAKKMLKQDGILCS  211 (237)
Q Consensus       180 ~~~D~v~~~~~-------~~~~~l~~~~~~L~~gG~l~~  211 (237)
                      ++||+|+.+..       .....+..+.+.|||||.+++
T Consensus       115 ~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~  153 (348)
T 2y1w_A          115 EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP  153 (348)
T ss_dssp             SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred             CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEE
Confidence            57999998643       223577888999999999973

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.43  E-value=1.8e-13  Score=107.50  Aligned_cols=108  Identities=14%  Similarity=0.050  Sum_probs=79.9

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHH---hCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARA---VAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FP  175 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~---~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~  175 (237)
                      +...+...++.+|||+|||+|..+..+++.   +++.++|+++|+++.+++.|+.    .  ..++++..+|+.+.. ++
T Consensus        73 l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~----~--~~~v~~~~gD~~~~~~l~  146 (236)
T 2bm8_A           73 YHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----D--MENITLHQGDCSDLTTFE  146 (236)
T ss_dssp             HHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----G--CTTEEEEECCSSCSGGGG
T ss_pred             HHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc----c--CCceEEEECcchhHHHHH
Confidence            444444446789999999999999999887   4566899999999999888762    2  244999999987520 12


Q ss_pred             CCCCCCCCEEEEeCCC--hhchHHHHHh-cccCCCEEEEEe
Q 026506          176 DEFSGLADSIFLDLPQ--PWLAIPSAKK-MLKQDGILCSFS  213 (237)
Q Consensus       176 ~~~~~~~D~v~~~~~~--~~~~l~~~~~-~L~~gG~l~~~~  213 (237)
                      ......||+|+++...  ....+.++.+ .|||||++++..
T Consensus       147 ~~~~~~fD~I~~d~~~~~~~~~l~~~~r~~LkpGG~lv~~d  187 (236)
T 2bm8_A          147 HLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIED  187 (236)
T ss_dssp             GGSSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred             hhccCCCCEEEECCchHhHHHHHHHHHHhhCCCCCEEEEEe
Confidence            1111369999987653  3457888886 999999999753

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.43  E-value=1.2e-13  Score=103.45  Aligned_cols=100  Identities=14%  Similarity=0.083  Sum_probs=79.6

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      .+.++|||+|||+|.++..++... +..+|+++|+|+.+++.+++++..+|...++.+  .|.... .+.   +.||+|+
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~-p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~-~~~---~~~DvVL  120 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNEN-EKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD-VYK---GTYDVVF  120 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSS-CCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH-HTT---SEEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc-CCC---CCcChhh
Confidence            567899999999999998887775 456999999999999999999999998754666  565532 333   6799998


Q ss_pred             EeC-----CChhchHHHHHhcccCCCEEEEEe
Q 026506          187 LDL-----PQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       187 ~~~-----~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ..-     .+....+.++++.|+|||.++.+-
T Consensus       121 a~k~LHlL~~~~~al~~v~~~L~pggvfISfp  152 (200)
T 3fzg_A          121 LLKMLPVLKQQDVNILDFLQLFHTQNFVISFP  152 (200)
T ss_dssp             EETCHHHHHHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred             HhhHHHhhhhhHHHHHHHHHHhCCCCEEEEeC
Confidence            642     233456779999999999999664

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.43  E-value=3.8e-13  Score=106.56  Aligned_cols=110  Identities=16%  Similarity=0.143  Sum_probs=81.8

Q ss_pred             HHhcCCCCCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHc---CCCCc---------------
Q 026506          101 IMYLELVPGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERT---GVSSF---------------  161 (237)
Q Consensus       101 ~~~~~~~~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~---~~~~~---------------  161 (237)
                      +..+...++.+|||+|||+|.++..++..+ .+..+|+++|+++.+++.|++++...   ++.+.               
T Consensus        44 l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (250)
T 1o9g_A           44 LARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPS  123 (250)
T ss_dssp             HHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHH
T ss_pred             HHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhccccc
Confidence            333444467899999999999999998872 13478999999999999999887655   33222               


Q ss_pred             ----------EE-------------EEEccccCCCCC-----CCCCCCCCEEEEeCCC----h----------hchHHHH
Q 026506          162 ----------VT-------------VGVRDIQGQGFP-----DEFSGLADSIFLDLPQ----P----------WLAIPSA  199 (237)
Q Consensus       162 ----------i~-------------~~~~d~~~~~~~-----~~~~~~~D~v~~~~~~----~----------~~~l~~~  199 (237)
                                ++             +..+|+.+ ..+     .  ...||+|++++|-    .          ..+++++
T Consensus       124 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~--~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~  200 (250)
T 1o9g_A          124 YLEAAQAARRLRERLTAEGGALPCAIRTADVFD-PRALSAVLA--GSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSL  200 (250)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTC-GGGHHHHHT--TCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhccccccccccceeeccccc-ccccccccC--CCCceEEEeCCCeeccccccccccccHHHHHHHHH
Confidence                      45             88899874 221     1  1479999998651    1          1578999


Q ss_pred             HhcccCCCEEEEEe
Q 026506          200 KKMLKQDGILCSFS  213 (237)
Q Consensus       200 ~~~L~~gG~l~~~~  213 (237)
                      .+.|+|||++++..
T Consensus       201 ~~~LkpgG~l~~~~  214 (250)
T 1o9g_A          201 ASALPAHAVIAVTD  214 (250)
T ss_dssp             HHHSCTTCEEEEEE
T ss_pred             HHhcCCCcEEEEeC
Confidence            99999999999743

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.43  E-value=2.2e-13  Score=108.61  Aligned_cols=120  Identities=18%  Similarity=0.018  Sum_probs=93.4

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEccccCCCCCCCCCCCCC
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT--GV-SSFVTVGVRDIQGQGFPDEFSGLAD  183 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~~~~~~~~~~~D  183 (237)
                      ..+.+|||+|||+|.++..+++.  + .+++++|+++.+++.|++++...  +. ..++++..+|..+  +.    +.||
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~--~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~--~~----~~fD  141 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY--D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDL--DI----KKYD  141 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS--S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGS--CC----CCEE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC--C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHH--HH----hhCC
Confidence            34579999999999999888877  4 79999999999999999875421  11 2459999999874  22    5699


Q ss_pred             EEEEeCCChhchHHHHHhcccCCCEEEEEeCC----HHHHHHHHHHHHhcCccccc
Q 026506          184 SIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC----IEQVQRSCESLRLNFTGKES  235 (237)
Q Consensus       184 ~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~----~~~~~~~~~~l~~~f~~v~~  235 (237)
                      +|++|..++..+++.+.+.|+|||++++...+    .....++.+.+++.|..+..
T Consensus       142 ~Ii~d~~dp~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~~~  197 (262)
T 2cmg_A          142 LIFCLQEPDIHRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGVFSVAMP  197 (262)
T ss_dssp             EEEESSCCCHHHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTTCSEEEE
T ss_pred             EEEECCCChHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHhCCceEE
Confidence            99999988888899999999999999976422    23456666667766776543

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.43  E-value=5.4e-13  Score=111.13  Aligned_cols=98  Identities=26%  Similarity=0.294  Sum_probs=79.1

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..+|.+|||+|||+|.+++..++.  ++.+|+++|.++ +++.|+++++.+++.++|.++.+|+.+..++    .++|+|
T Consensus        81 ~~~~k~VLDvG~GtGiLs~~Aa~a--GA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp----e~~Dvi  153 (376)
T 4hc4_A           81 ALRGKTVLDVGAGTGILSIFCAQA--GARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP----EQVDAI  153 (376)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS----SCEEEE
T ss_pred             hcCCCEEEEeCCCccHHHHHHHHh--CCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC----ccccEE
Confidence            357899999999999998766654  457999999986 8899999999999998899999999875554    579999


Q ss_pred             EEeCCC--------hhchHHHHHhcccCCCEEE
Q 026506          186 FLDLPQ--------PWLAIPSAKKMLKQDGILC  210 (237)
Q Consensus       186 ~~~~~~--------~~~~l~~~~~~L~~gG~l~  210 (237)
                      +..+-.        ...++....+.|+|||.++
T Consensus       154 vsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~i  186 (376)
T 4hc4_A          154 VSEWMGYGLLHESMLSSVLHARTKWLKEGGLLL  186 (376)
T ss_dssp             ECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred             EeecccccccccchhhhHHHHHHhhCCCCceEC
Confidence            875431        2245666679999999986

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.42  E-value=1.4e-12  Score=103.23  Aligned_cols=107  Identities=20%  Similarity=0.200  Sum_probs=84.7

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ++......++.+|||+|||+|.++..++..   ..+++++|+++.+++.++++....+.  ++++..+|+.+..++    
T Consensus        33 ~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~----  103 (252)
T 1wzn_A           33 IFKEDAKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFK----  103 (252)
T ss_dssp             HHHHTCSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCC----
T ss_pred             HHHHhcccCCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcccC----
Confidence            344445567889999999999999988875   36899999999999999999887664  388999999763332    


Q ss_pred             CCCCEEEEeCC--------ChhchHHHHHhcccCCCEEEEEeCC
Q 026506          180 GLADSIFLDLP--------QPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       180 ~~~D~v~~~~~--------~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      +.||+|++...        ....+++++.+.|+|||.+++-.++
T Consensus       104 ~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~  147 (252)
T 1wzn_A          104 NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC  147 (252)
T ss_dssp             SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence            57999986421        2246789999999999999876654

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.42  E-value=7.8e-13  Score=109.08  Aligned_cols=107  Identities=19%  Similarity=0.243  Sum_probs=86.8

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ++..++..+ .+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++...++.+++++..+|+.+ .++    
T Consensus       160 ~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~----  231 (334)
T 2ip2_A          160 IPRLLDFRG-RSFVDVGGGSGELTKAILQAE-PSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP----  231 (334)
T ss_dssp             HHHHSCCTT-CEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC----
T ss_pred             HHHhCCCCC-CEEEEeCCCchHHHHHHHHHC-CCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC----
Confidence            455556666 899999999999999999885 5579999999 99999999988776665669999999975 343    


Q ss_pred             CCCCEEEEeC-----CChh--chHHHHHhcccCCCEEEEEeC
Q 026506          180 GLADSIFLDL-----PQPW--LAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       180 ~~~D~v~~~~-----~~~~--~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ++||+|++..     ++..  .+++++.+.|+|||++++...
T Consensus       232 ~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  273 (334)
T 2ip2_A          232 SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIER  273 (334)
T ss_dssp             SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            5699998743     2222  689999999999999998743

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=99.42  E-value=6e-14  Score=117.45  Aligned_cols=185  Identities=19%  Similarity=0.193  Sum_probs=116.0

Q ss_pred             cCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHh--hhcC-C
Q 026506           12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWT--LVLS-H   87 (237)
Q Consensus        12 ~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~--~~~~-~   87 (237)
                      ....|++||||++.+..+        ||.|..|+.|..+.|..... +|..   ..|+|. |...|....+.  ..++ .
T Consensus        93 ~v~~~~vGdrV~~~~~~~--------cg~C~~C~~g~~~~C~~~~~-~g~~---~~G~~aey~~v~~~~~~~~P~~~~~~  160 (370)
T 4ej6_A           93 AVRDIAPGARITGDPNIS--------CGRCPQCQAGRVNLCRNLRA-IGIH---RDGGFAEYVLVPRKQAFEIPLTLDPV  160 (370)
T ss_dssp             TCCSSCTTCEEEECCEEC--------CSSSHHHHTTCGGGCTTCEE-BTTT---BCCSSBSEEEEEGGGEEEECTTSCTT
T ss_pred             CCCCCCCCCEEEECCCCC--------CCCChHHhCcCcccCCCccc-cCCC---CCCcceEEEEEchhhEEECCCCCCHH
Confidence            346799999999977444        99999999999888874211 1211   123333 33333221111  0111 1


Q ss_pred             cccccccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 026506           88 RTQILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG  165 (237)
Q Consensus        88 ~~~~~~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~  165 (237)
                      .+....+...+ ..+...++++|++||.+|+|+ |.+++++++..+ ..+|+++|.+++..+.+++    .|.+..++..
T Consensus       161 ~aal~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~  235 (370)
T 4ej6_A          161 HGAFCEPLACCLHGVDLSGIKAGSTVAILGGGVIGLLTVQLARLAG-ATTVILSTRQATKRRLAEE----VGATATVDPS  235 (370)
T ss_dssp             GGGGHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHHHHHHHH----HTCSEEECTT
T ss_pred             HHhhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCCEEECCC
Confidence            22222222222 245667889999999999988 888888998863 3589999999999998877    4654322222


Q ss_pred             EccccC--CCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          166 VRDIQG--QGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       166 ~~d~~~--~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ..|+.+  ......+.+++|+||...... ..++.+.+.|++||++++++.
T Consensus       236 ~~~~~~~i~~~~~~~~gg~Dvvid~~G~~-~~~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          236 AGDVVEAIAGPVGLVPGGVDVVIECAGVA-ETVKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             SSCHHHHHHSTTSSSTTCEEEEEECSCCH-HHHHHHHHHEEEEEEEEECSC
T ss_pred             CcCHHHHHHhhhhccCCCCCEEEECCCCH-HHHHHHHHHhccCCEEEEEec
Confidence            222211  010001225799987665543 478999999999999998753

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.42  E-value=8.7e-12  Score=95.67  Aligned_cols=115  Identities=15%  Similarity=0.100  Sum_probs=87.9

Q ss_pred             CCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       105 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      ...++.+|||+|||+|.++..++..  +..+++++|+++.+++.+++++..++.  ++++..+|+.+  ++    +.||+
T Consensus        46 ~~~~~~~vlD~g~G~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~--~~----~~~D~  115 (207)
T 1wy7_A           46 GDIEGKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSE--FN----SRVDI  115 (207)
T ss_dssp             TSSTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGG--CC----CCCSE
T ss_pred             CCCCcCEEEEeeCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHH--cC----CCCCE
Confidence            4567899999999999999988876  335899999999999999999888776  49999999975  33    47999


Q ss_pred             EEEeCCC-------hhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCc
Q 026506          185 IFLDLPQ-------PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT  231 (237)
Q Consensus       185 v~~~~~~-------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~  231 (237)
                      |++|+|-       ...+++.+.+.+  |+.+++..+.....+...+.+.+ +|.
T Consensus       116 v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~  168 (207)
T 1wy7_A          116 VIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFV  168 (207)
T ss_dssp             EEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEE
T ss_pred             EEEcCCCccccCCchHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCe
Confidence            9999872       124677888887  55444333345556666667766 554

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.42  E-value=8.9e-13  Score=110.80  Aligned_cols=102  Identities=19%  Similarity=0.178  Sum_probs=80.8

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      .++|.+|||+|||+|.+++.++..  + ..|+++|+|+.+++.|++|++.+++..  .+..+|+.+. ++.. .+.||+|
T Consensus       212 ~~~g~~VLDlg~GtG~~sl~~a~~--g-a~V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~-l~~~-~~~fD~I  284 (393)
T 4dmg_A          212 VRPGERVLDVYSYVGGFALRAARK--G-AYALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPT-LRGL-EGPFHHV  284 (393)
T ss_dssp             CCTTCEEEEESCTTTHHHHHHHHT--T-CEEEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHH-HHTC-CCCEEEE
T ss_pred             hcCCCeEEEcccchhHHHHHHHHc--C-CeEEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHH-HHHh-cCCCCEE
Confidence            356899999999999999998875  3 349999999999999999999998764  3558888751 1110 1449999


Q ss_pred             EEeCCCh--------------hchHHHHHhcccCCCEEEEEeC
Q 026506          186 FLDLPQP--------------WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       186 ~~~~~~~--------------~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ++|+|..              ..+++.+.+.|+|||.+++.+-
T Consensus       285 i~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~  327 (393)
T 4dmg_A          285 LLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSC  327 (393)
T ss_dssp             EECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            9998851              2578889999999999986543

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.42  E-value=2.9e-13  Score=105.03  Aligned_cols=124  Identities=16%  Similarity=0.097  Sum_probs=92.6

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC---CCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ---GFPD  176 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~  176 (237)
                      ++..+...++.+|||+|||+|.++..++..   ..+++++|+++.+++.++++    +  + +.+...|+.+.   ....
T Consensus        44 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~----~--~-~~~~~~~~~~~~~~~~~~  113 (227)
T 3e8s_A           44 ILLAILGRQPERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAA----G--A-GEVHLASYAQLAEAKVPV  113 (227)
T ss_dssp             HHHHHHHTCCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHT----C--S-SCEEECCHHHHHTTCSCC
T ss_pred             HHHHhhcCCCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh----c--c-cccchhhHHhhccccccc
Confidence            455555567799999999999999888876   36899999999999999886    1  2 55666666542   2222


Q ss_pred             CCCCCCCEEEEe----CCChhchHHHHHhcccCCCEEEEEeCCH-------------------------------HHHHH
Q 026506          177 EFSGLADSIFLD----LPQPWLAIPSAKKMLKQDGILCSFSPCI-------------------------------EQVQR  221 (237)
Q Consensus       177 ~~~~~~D~v~~~----~~~~~~~l~~~~~~L~~gG~l~~~~~~~-------------------------------~~~~~  221 (237)
                        ...||+|++.    ..++..+++++.+.|+|||++++..+..                               .+.++
T Consensus       114 --~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (227)
T 3e8s_A          114 --GKDYDLICANFALLHQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLAS  191 (227)
T ss_dssp             --CCCEEEEEEESCCCSSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHH
T ss_pred             --CCCccEEEECchhhhhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHH
Confidence              1459999875    3455678999999999999999876521                               13577


Q ss_pred             HHHHHHh-cCccccc
Q 026506          222 SCESLRL-NFTGKES  235 (237)
Q Consensus       222 ~~~~l~~-~f~~v~~  235 (237)
                      +.+.+++ ||..+++
T Consensus       192 ~~~~l~~aGf~~~~~  206 (227)
T 3e8s_A          192 WLNALDMAGLRLVSL  206 (227)
T ss_dssp             HHHHHHHTTEEEEEE
T ss_pred             HHHHHHHcCCeEEEE
Confidence            7788888 7876654

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.42  E-value=6.5e-14  Score=111.85  Aligned_cols=129  Identities=15%  Similarity=0.088  Sum_probs=88.8

Q ss_pred             CCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--C------------------------
Q 026506          105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG--V------------------------  158 (237)
Q Consensus       105 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~------------------------  158 (237)
                      ...++.+|||+|||+|.++...+..  +..+|+++|+|+.+++.|+++++...  .                        
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~--~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~  129 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEE  129 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHh--hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHH
Confidence            4567889999999999877554433  23579999999999999998765431  0                        


Q ss_pred             --CCcEE-EEEccccCC-CCCCCCCCCCCEEEEeC------C---ChhchHHHHHhcccCCCEEEEEeCCHH--------
Q 026506          159 --SSFVT-VGVRDIQGQ-GFPDEFSGLADSIFLDL------P---QPWLAIPSAKKMLKQDGILCSFSPCIE--------  217 (237)
Q Consensus       159 --~~~i~-~~~~d~~~~-~~~~~~~~~~D~v~~~~------~---~~~~~l~~~~~~L~~gG~l~~~~~~~~--------  217 (237)
                        ...+. +..+|+.+. +++....++||+|+...      +   +...+++++.++|||||.+++......        
T Consensus       130 ~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~  209 (263)
T 2a14_A          130 KLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKR  209 (263)
T ss_dssp             HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTE
T ss_pred             HHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCe
Confidence              01133 788898752 22211126899998752      1   223689999999999999997752211        


Q ss_pred             -------HHHHHHHHHHh-cCccccc
Q 026506          218 -------QVQRSCESLRL-NFTGKES  235 (237)
Q Consensus       218 -------~~~~~~~~l~~-~f~~v~~  235 (237)
                             ..+++.+.+++ ||..+++
T Consensus       210 ~~~~~~~~~~~l~~~l~~aGF~i~~~  235 (263)
T 2a14_A          210 EFSCVALEKGEVEQAVLDAGFDIEQL  235 (263)
T ss_dssp             EEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred             EeeccccCHHHHHHHHHHCCCEEEEE
Confidence                   34567778887 7876543

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.41  E-value=6.1e-13  Score=102.44  Aligned_cols=105  Identities=17%  Similarity=0.220  Sum_probs=83.9

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      +.++.+|||+|||+|.++..++.. +. .+++++|+++.+++.++++...  . .++++..+|+.+..++.   +.||+|
T Consensus        40 ~~~~~~vLdiGcG~G~~~~~l~~~-~~-~~v~~~D~s~~~~~~a~~~~~~--~-~~i~~~~~d~~~~~~~~---~~fD~v  111 (215)
T 2pxx_A           40 LRPEDRILVLGCGNSALSYELFLG-GF-PNVTSVDYSSVVVAAMQACYAH--V-PQLRWETMDVRKLDFPS---ASFDVV  111 (215)
T ss_dssp             CCTTCCEEEETCTTCSHHHHHHHT-TC-CCEEEEESCHHHHHHHHHHTTT--C-TTCEEEECCTTSCCSCS---SCEEEE
T ss_pred             cCCCCeEEEECCCCcHHHHHHHHc-CC-CcEEEEeCCHHHHHHHHHhccc--C-CCcEEEEcchhcCCCCC---CcccEE
Confidence            467889999999999999988876 23 3899999999999999998653  2 34889999987644444   689999


Q ss_pred             EEeCC--------------------ChhchHHHHHhcccCCCEEEEEeCCHHH
Q 026506          186 FLDLP--------------------QPWLAIPSAKKMLKQDGILCSFSPCIEQ  218 (237)
Q Consensus       186 ~~~~~--------------------~~~~~l~~~~~~L~~gG~l~~~~~~~~~  218 (237)
                      +.+.+                    ....+++++.+.|+|||++++..+....
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~  164 (215)
T 2pxx_A          112 LEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPH  164 (215)
T ss_dssp             EEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHH
T ss_pred             EECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcH
Confidence            87532                    2246899999999999999988886644

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.41  E-value=8.9e-13  Score=108.90  Aligned_cols=111  Identities=10%  Similarity=0.250  Sum_probs=89.6

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      .++.+|||+|||+|.++.. +.   +..+|+++|+|+.+++.+++|++.+++.+++++..+|+.+  +.    +.||+|+
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~---~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~--~~----~~fD~Vi  263 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK---NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVRE--VD----VKGNRVI  263 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT---TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGG--CC----CCEEEEE
T ss_pred             CCCCEEEEccCccCHHHHh-cc---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHH--hc----CCCcEEE
Confidence            5789999999999999988 65   3579999999999999999999999986569999999975  22    5699999


Q ss_pred             EeCCC-hhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh
Q 026506          187 LDLPQ-PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL  228 (237)
Q Consensus       187 ~~~~~-~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~  228 (237)
                      +|+|. ...+++.+.+.|+|||.+++++.... .+...+.+++
T Consensus       264 ~dpP~~~~~~l~~~~~~L~~gG~l~~~~~~~~-~~~~~~~l~~  305 (336)
T 2yx1_A          264 MNLPKFAHKFIDKALDIVEEGGVIHYYTIGKD-FDKAIKLFEK  305 (336)
T ss_dssp             ECCTTTGGGGHHHHHHHEEEEEEEEEEEEESS-SHHHHHHHHH
T ss_pred             ECCcHhHHHHHHHHHHHcCCCCEEEEEEeecC-chHHHHHHHH
Confidence            99764 34689999999999999887643322 4445555554

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.40  E-value=2e-13  Score=103.80  Aligned_cols=115  Identities=18%  Similarity=0.172  Sum_probs=85.2

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC----CCC--
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD----EFS--  179 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~~--  179 (237)
                      ++++.+|||+|||+|.++..+++.   .++|+++|+++..           ...+ +++..+|+.+.....    ...  
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~-----------~~~~-v~~~~~D~~~~~~~~~~~~~~~~~   87 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME-----------EIAG-VRFIRCDIFKETIFDDIDRALREE   87 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC-----------CCTT-CEEEECCTTSSSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc-----------cCCC-eEEEEccccCHHHHHHHHHHhhcc
Confidence            578999999999999999988876   4799999998741           2234 889999987532110    000  


Q ss_pred             --CCCCEEEEeCCCh----------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHhcCccccc
Q 026506          180 --GLADSIFLDLPQP----------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGKES  235 (237)
Q Consensus       180 --~~~D~v~~~~~~~----------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~v~~  235 (237)
                        +.||+|++|++..                ...++.+.+.|||||.+++..-..+....+.+.++..|..|++
T Consensus        88 ~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~F~~v~~  161 (191)
T 3dou_A           88 GIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKNFSSYKI  161 (191)
T ss_dssp             TCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGGEEEEEE
T ss_pred             cCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHhcCEEEE
Confidence              3799999986421                2457788999999999986665555567788888778887764

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.40  E-value=1.1e-12  Score=109.67  Aligned_cols=125  Identities=18%  Similarity=0.151  Sum_probs=94.4

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC--CCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDE  177 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~  177 (237)
                      +++.+... +.+|||+|||+|.+++.++..   ..+|+++|+++.+++.|++|++.+++.+ +++..+|+.+.  .+...
T Consensus       206 ~~~~~~~~-~~~vLDl~cG~G~~~l~la~~---~~~V~gvd~~~~ai~~a~~n~~~ng~~~-v~~~~~d~~~~~~~~~~~  280 (369)
T 3bt7_A          206 ALDVTKGS-KGDLLELYCGNGNFSLALARN---FDRVLATEIAKPSVAAAQYNIAANHIDN-VQIIRMAAEEFTQAMNGV  280 (369)
T ss_dssp             HHHHTTTC-CSEEEEESCTTSHHHHHHGGG---SSEEEEECCCHHHHHHHHHHHHHTTCCS-EEEECCCSHHHHHHHSSC
T ss_pred             HHHHhhcC-CCEEEEccCCCCHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEECCHHHHHHHHhhc
Confidence            44555544 578999999999999988764   3689999999999999999999998865 99999998641  11110


Q ss_pred             -----------CCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHhcC
Q 026506          178 -----------FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNF  230 (237)
Q Consensus       178 -----------~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f  230 (237)
                                 ....||+|++|+|... ..+.+.+.|+++|+++.++-....+.+-++.|.++|
T Consensus       281 ~~~~~l~~~~~~~~~fD~Vv~dPPr~g-~~~~~~~~l~~~g~ivyvsc~p~t~ard~~~l~~~y  343 (369)
T 3bt7_A          281 REFNRLQGIDLKSYQCETIFVDPPRSG-LDSETEKMVQAYPRILYISCNPETLCKNLETLSQTH  343 (369)
T ss_dssp             CCCTTGGGSCGGGCCEEEEEECCCTTC-CCHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHE
T ss_pred             cccccccccccccCCCCEEEECcCccc-cHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhhCc
Confidence                       0026999999988643 567788888999999877766666666666665443

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.40  E-value=1.5e-13  Score=108.19  Aligned_cols=97  Identities=22%  Similarity=0.180  Sum_probs=80.6

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      .++.+|||+|||+|.++..++..   ..+|+++|+++.+++.|++++...++..++++..+|+.+.. +.   +.||+|+
T Consensus        77 ~~~~~vLD~gcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~---~~~D~v~  149 (241)
T 3gdh_A           77 FKCDVVVDAFCGVGGNTIQFALT---GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SF---LKADVVF  149 (241)
T ss_dssp             SCCSEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GG---CCCSEEE
T ss_pred             cCCCEEEECccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-cc---CCCCEEE
Confidence            47899999999999999999876   27999999999999999999998888555999999997532 22   6899999


Q ss_pred             EeCCChh-----chHHHHHhcccCCCEEE
Q 026506          187 LDLPQPW-----LAIPSAKKMLKQDGILC  210 (237)
Q Consensus       187 ~~~~~~~-----~~l~~~~~~L~~gG~l~  210 (237)
                      ++++...     ..+.++.+.|+|||.++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~L~pgG~~i  178 (241)
T 3gdh_A          150 LSPPWGGPDYATAETFDIRTMMSPDGFEI  178 (241)
T ss_dssp             ECCCCSSGGGGGSSSBCTTTSCSSCHHHH
T ss_pred             ECCCcCCcchhhhHHHHHHhhcCCcceeH
Confidence            9876332     25667889999999865

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=99.40  E-value=6.2e-13  Score=110.02  Aligned_cols=114  Identities=19%  Similarity=0.231  Sum_probs=91.3

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-----CcEEEEEccccCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS-----SFVTVGVRDIQGQG  173 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~i~~~~~d~~~~~  173 (237)
                      .....++++||++|||+++|+|+-+.+++... ..+.++++|+++.+++.+++++.+.+..     +.+.+...|...  
T Consensus       139 l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~-~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~--  215 (359)
T 4fzv_A          139 LPVLALGLQPGDIVLDLCAAPGGKTLALLQTG-CCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRK--  215 (359)
T ss_dssp             HHHHHHCCCTTEEEEESSCTTCHHHHHHHHTT-CEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGG--
T ss_pred             HHHHHhCCCCCCEEEEecCCccHHHHHHHHhc-CCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhh--
Confidence            45667899999999999999999999998864 4578999999999999999999887653     347888888764  


Q ss_pred             CCCCCCCCCCEEEEeCCCh-----------------------------hchHHHHHhcccCCCEEEEEeCCH
Q 026506          174 FPDEFSGLADSIFLDLPQP-----------------------------WLAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       174 ~~~~~~~~~D~v~~~~~~~-----------------------------~~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                      +.....+.||.|++|+|+.                             .++|.++.+.|||||+|+ |++|.
T Consensus       216 ~~~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LV-YsTCS  286 (359)
T 4fzv_A          216 WGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVV-YSTCS  286 (359)
T ss_dssp             HHHHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEE-EEESC
T ss_pred             cchhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEE-EEeCC
Confidence            2211226799999998843                             136788899999999988 87774

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.40  E-value=5.7e-12  Score=107.51  Aligned_cols=126  Identities=18%  Similarity=0.167  Sum_probs=94.7

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC--C
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD--E  177 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~--~  177 (237)
                      ++..+...++.+|||+|||+|.++..++..   ..+|+++|+++.+++.|++++..+++.+ +++..+|+.+ .++.  .
T Consensus       278 ~~~~l~~~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~~-v~f~~~d~~~-~l~~~~~  352 (433)
T 1uwv_A          278 ALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQN-VTFYHENLEE-DVTKQPW  352 (433)
T ss_dssp             HHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCTTS-CCSSSGG
T ss_pred             HHHhhcCCCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEECCHHH-Hhhhhhh
Confidence            555667778899999999999999998876   4799999999999999999999888875 9999999975 2211  1


Q ss_pred             CCCCCCEEEEeCCChh--chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCcc
Q 026506          178 FSGLADSIFLDLPQPW--LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTG  232 (237)
Q Consensus       178 ~~~~~D~v~~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~  232 (237)
                      ..+.||+|++|+|...  +.++.+. .++|++.++ ++-....+.+-...+.+ +|.-
T Consensus       353 ~~~~fD~Vv~dPPr~g~~~~~~~l~-~~~p~~ivy-vsc~p~tlard~~~l~~~Gy~~  408 (433)
T 1uwv_A          353 AKNGFDKVLLDPARAGAAGVMQQII-KLEPIRIVY-VSCNPATLARDSEALLKAGYTI  408 (433)
T ss_dssp             GTTCCSEEEECCCTTCCHHHHHHHH-HHCCSEEEE-EESCHHHHHHHHHHHHHTTCEE
T ss_pred             hcCCCCEEEECCCCccHHHHHHHHH-hcCCCeEEE-EECChHHHHhhHHHHHHCCcEE
Confidence            1257999999988542  3333333 367877666 45556667777777776 6654

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.40  E-value=1.5e-12  Score=105.87  Aligned_cols=108  Identities=11%  Similarity=0.013  Sum_probs=79.4

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC-----cEEEEEccccCC--------C
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS-----FVTVGVRDIQGQ--------G  173 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-----~i~~~~~d~~~~--------~  173 (237)
                      .++.+|||+|||+|..+..++..  +..+|+++|+|+.+++.|+++....+...     .+++...|+...        .
T Consensus        47 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~  124 (302)
T 2vdw_A           47 SNKRKVLAIDFGNGADLEKYFYG--EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREV  124 (302)
T ss_dssp             CSCCEEEETTCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTT
T ss_pred             CCCCeEEEEecCCcHhHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcc
Confidence            35789999999999866555543  34689999999999999999887655321     256777777321        1


Q ss_pred             CCCCCCCCCCEEEEeC--------CChhchHHHHHhcccCCCEEEEEeCCHHHH
Q 026506          174 FPDEFSGLADSIFLDL--------PQPWLAIPSAKKMLKQDGILCSFSPCIEQV  219 (237)
Q Consensus       174 ~~~~~~~~~D~v~~~~--------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~  219 (237)
                      ++.   +.||+|++..        .+...+++++.+.|||||++++..+.....
T Consensus       125 ~~~---~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~  175 (302)
T 2vdw_A          125 FYF---GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKL  175 (302)
T ss_dssp             CCS---SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHH
T ss_pred             ccC---CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHH
Confidence            233   6899997532        233568999999999999999888876543

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.40  E-value=8.8e-13  Score=103.60  Aligned_cols=103  Identities=24%  Similarity=0.239  Sum_probs=82.0

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      .++.+|||+|||+|.++..++..    .+++++|+++.+++.|+++....+  .++++..+|+.+..++    +.||+|+
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~----~~fD~v~  101 (243)
T 3d2l_A           32 EPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELELP----EPVDAIT  101 (243)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCCCS----SCEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcCCC----CCcCEEE
Confidence            45789999999999999877754    689999999999999999987665  3388899998753332    6799998


Q ss_pred             EeC---------CChhchHHHHHhcccCCCEEEEEeCCHHHH
Q 026506          187 LDL---------PQPWLAIPSAKKMLKQDGILCSFSPCIEQV  219 (237)
Q Consensus       187 ~~~---------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~  219 (237)
                      +..         .....+++++.+.|+|||++++..+.....
T Consensus       102 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  143 (243)
T 3d2l_A          102 ILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKM  143 (243)
T ss_dssp             ECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHH
T ss_pred             EeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHH
Confidence            753         122357899999999999999877765443

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=99.40  E-value=1.4e-13  Score=116.29  Aligned_cols=187  Identities=17%  Similarity=0.135  Sum_probs=115.7

Q ss_pred             CCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeecccc--cc-----CCCCceEEeccCcEE-EEECCCHHHHhhh
Q 026506           13 TRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDW--IG-----KPFGSMVFSNKGGFV-YLLAPTPELWTLV   84 (237)
Q Consensus        13 ~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~-----~~~g~~~~~~~~~~~-~~~~~~~~~~~~~   84 (237)
                      ...|++||||++.+..+        ||.|..|+.|..+.|..  ..     ..+|.......|+|. |...|..+.....
T Consensus        79 v~~~~vGDrV~~~~~~~--------Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~~~~~~G~~aey~~v~~~~~~~~~  150 (398)
T 2dph_A           79 VELMDIGDLVSVPFNVA--------CGRCRNCKEARSDVCENNLVNPDADLGAFGFDLKGWSGGQAEYVLVPYADYMLLK  150 (398)
T ss_dssp             CCSCCTTCEEECCSBCC--------CSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTTBSSCCCSSBSEEEESSHHHHCEE
T ss_pred             CCCCCCCCEEEEcCCCC--------CCCChhhhCcCcccCCCccccccccccccccccCCCCceeeeeEEeccccCeEEE
Confidence            46799999999977666        99999999999888863  10     112210001234444 4555543211122


Q ss_pred             cCCc----------ccccccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026506           85 LSHR----------TQILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASARED  152 (237)
Q Consensus        85 ~~~~----------~~~~~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~  152 (237)
                      ++..          +.+..+...+ ..+...++++|++||.+|+|+ |.+++++++..+ ..+|+++|.+++.++.+++ 
T Consensus       151 iP~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~-  228 (398)
T 2dph_A          151 FGDKEQAMEKIKDLTLISDILPTGFHGCVSAGVKPGSHVYIAGAGPVGRCAAAGARLLG-AACVIVGDQNPERLKLLSD-  228 (398)
T ss_dssp             CSSHHHHHHTHHHHTTTTTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHT-
T ss_pred             CCCCCChhhhcchhhhhcCHHHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH-
Confidence            2211          1111122222 244667889999999999988 888899998874 3489999999999988875 


Q ss_pred             HHHcCCCCcEEEEEccc-cCCCCCCCC-CCCCCEEEEeCCChh-------------chHHHHHhcccCCCEEEEEeC
Q 026506          153 FERTGVSSFVTVGVRDI-QGQGFPDEF-SGLADSIFLDLPQPW-------------LAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       153 ~~~~~~~~~i~~~~~d~-~~~~~~~~~-~~~~D~v~~~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~  214 (237)
                         +|.+ .++....|+ .+ .+.... +.++|+||.......             ..++.+.+.|+++|++++++.
T Consensus       229 ---lGa~-~i~~~~~~~~~~-~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~  300 (398)
T 2dph_A          229 ---AGFE-TIDLRNSAPLRD-QIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGI  300 (398)
T ss_dssp             ---TTCE-EEETTSSSCHHH-HHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSC
T ss_pred             ---cCCc-EEcCCCcchHHH-HHHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEecc
Confidence               4642 222211221 10 011101 136999887665432             378999999999999987764

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.39  E-value=4.5e-13  Score=101.93  Aligned_cols=117  Identities=20%  Similarity=0.208  Sum_probs=83.7

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCC--------cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE-EccccCCCCC-
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPT--------GHVYTFDFHEQRAASAREDFERTGVSSFVTVG-VRDIQGQGFP-  175 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~--------~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~-~~d~~~~~~~-  175 (237)
                      +.++.+|||+|||+|.++..+++..+..        .+++++|+++..           ...+ +++. .+|+...... 
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~-~~~~~~~d~~~~~~~~   87 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEG-ATFLCPADVTDPRTSQ   87 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTT-CEEECSCCTTSHHHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCC-CeEEEeccCCCHHHHH
Confidence            5788999999999999999999987543        789999999831           2233 7777 7887542110 


Q ss_pred             ----CCCCCCCCEEEEeCCCh----------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHhcCcccc
Q 026506          176 ----DEFSGLADSIFLDLPQP----------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGKE  234 (237)
Q Consensus       176 ----~~~~~~~D~v~~~~~~~----------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~v~  234 (237)
                          ......||+|+++....                ..+++.+.+.|+|||++++..........+.+.++..|..++
T Consensus        88 ~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~v~  166 (196)
T 2nyu_A           88 RILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVR  166 (196)
T ss_dssp             HHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHHHEEEEE
T ss_pred             HHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHHHhcceE
Confidence                00014799999865311                257889999999999999876655556677777776665543

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.39  E-value=8.3e-13  Score=101.41  Aligned_cols=102  Identities=18%  Similarity=0.134  Sum_probs=80.1

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..++.+|||+|||+|..+..++...  ..+++++|+++.+++.+++++...+  .++++...|+.+.+++.   +.||+|
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~---~~fD~v   93 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVED--GYKTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKLPFKD---ESMSFV   93 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHHT--TCEEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSCCSCT---TCEEEE
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhCCCCC---CceeEE
Confidence            4678899999999998755555442  4689999999999999999987666  23788899987655444   689999


Q ss_pred             EEeC-------CChhchHHHHHhcccCCCEEEEEeC
Q 026506          186 FLDL-------PQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       186 ~~~~-------~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ++..       .+...+++++.+.|+|||++++...
T Consensus        94 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  129 (209)
T 2p8j_A           94 YSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFL  129 (209)
T ss_dssp             EECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            8742       2334689999999999999987654

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.39  E-value=1.5e-12  Score=112.18  Aligned_cols=104  Identities=21%  Similarity=0.220  Sum_probs=84.1

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ++..+...++.+|||+|||+|.++..+++.  +..+|+++|+++ +++.|++++..+++.+++++..+|+.+..++    
T Consensus       150 il~~l~~~~~~~VLDiGcGtG~la~~la~~--~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~----  222 (480)
T 3b3j_A          150 ILQNHTDFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP----  222 (480)
T ss_dssp             HHHTGGGTTTCEEEEESCSTTHHHHHHHHT--TCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS----
T ss_pred             HHHhhhhcCCCEEEEecCcccHHHHHHHHc--CCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC----
Confidence            444455567899999999999999888764  457999999998 9999999999988866799999999863333    


Q ss_pred             CCCCEEEEeCCC-------hhchHHHHHhcccCCCEEE
Q 026506          180 GLADSIFLDLPQ-------PWLAIPSAKKMLKQDGILC  210 (237)
Q Consensus       180 ~~~D~v~~~~~~-------~~~~l~~~~~~L~~gG~l~  210 (237)
                      ++||+|+++.+.       ....+..+.+.|+|||.++
T Consensus       223 ~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li  260 (480)
T 3b3j_A          223 EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMF  260 (480)
T ss_dssp             SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEE
T ss_pred             CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEE
Confidence            579999987651       1346777889999999997

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.38  E-value=4.9e-13  Score=99.36  Aligned_cols=105  Identities=13%  Similarity=0.063  Sum_probs=81.3

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC-CCCCCCCCCCCEEE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GFPDEFSGLADSIF  186 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~~~D~v~  186 (237)
                      ++.+|||+|||+|.++..++...   .+++++|+++.+++.+++++...+. + +++..+|+.+. .......+.||+|+
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~-~-~~~~~~d~~~~~~~~~~~~~~~D~i~  115 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEG---WEAVLVEKDPEAVRLLKENVRRTGL-G-ARVVALPVEVFLPEAKAQGERFTVAF  115 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTT---CEEEEECCCHHHHHHHHHHHHHHTC-C-CEEECSCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCC---CeEEEEeCCHHHHHHHHHHHHHcCC-c-eEEEeccHHHHHHhhhccCCceEEEE
Confidence            78899999999999999888762   3499999999999999999988876 4 88999998641 11010013799999


Q ss_pred             EeCC---ChhchHHHHH--hcccCCCEEEEEeCCHH
Q 026506          187 LDLP---QPWLAIPSAK--KMLKQDGILCSFSPCIE  217 (237)
Q Consensus       187 ~~~~---~~~~~l~~~~--~~L~~gG~l~~~~~~~~  217 (237)
                      ++.+   ...+.++.+.  +.|+|||.+++..+...
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~  151 (171)
T 1ws6_A          116 MAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKDL  151 (171)
T ss_dssp             ECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred             ECCCCchhHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence            9864   3345677777  99999999997766443

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.38  E-value=2.1e-12  Score=107.22  Aligned_cols=109  Identities=18%  Similarity=0.228  Sum_probs=88.8

Q ss_pred             HHHhcCCCC-CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCC-CCC
Q 026506          100 VIMYLELVP-GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF-PDE  177 (237)
Q Consensus       100 ~~~~~~~~~-~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~  177 (237)
                      ++..++..+ +.+|||+|||+|.++..+++.. +..+++++|+ +.+++.+++++...+..+++++..+|+.+... .. 
T Consensus       170 ~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-  246 (352)
T 3mcz_A          170 VVSELGVFARARTVIDLAGGHGTYLAQVLRRH-PQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEG-  246 (352)
T ss_dssp             HHHTCGGGTTCCEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTT-
T ss_pred             HHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhC-CCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCC-
Confidence            455556666 8899999999999999999885 5589999999 88999999999888877779999999986330 22 


Q ss_pred             CCCCCCEEEEeC-----CCh--hchHHHHHhcccCCCEEEEEe
Q 026506          178 FSGLADSIFLDL-----PQP--WLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       178 ~~~~~D~v~~~~-----~~~--~~~l~~~~~~L~~gG~l~~~~  213 (237)
                        ++||+|++..     ++.  ..+++++.+.|+|||++++..
T Consensus       247 --~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e  287 (352)
T 3mcz_A          247 --GAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILT  287 (352)
T ss_dssp             --CCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             --CCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence              5699998743     322  468999999999999999875

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.38  E-value=6.3e-13  Score=105.91  Aligned_cols=92  Identities=15%  Similarity=0.157  Sum_probs=75.1

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      .++.+|||+|||+|.++..++..   ..+++++|+++.+++.|+++..     + +++..+|+.+..+ .   +.||+|+
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~-----~-~~~~~~d~~~~~~-~---~~fD~v~  115 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADS---FGTVEGLELSADMLAIARRRNP-----D-AVLHHGDMRDFSL-G---RRFSAVT  115 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTT---SSEEEEEESCHHHHHHHHHHCT-----T-SEEEECCTTTCCC-S---CCEEEEE
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-----C-CEEEECChHHCCc-c---CCcCEEE
Confidence            46789999999999999888876   2589999999999999998632     3 8899999976433 2   7899998


Q ss_pred             EeC-C--------ChhchHHHHHhcccCCCEEEE
Q 026506          187 LDL-P--------QPWLAIPSAKKMLKQDGILCS  211 (237)
Q Consensus       187 ~~~-~--------~~~~~l~~~~~~L~~gG~l~~  211 (237)
                      +.. .        +...+++++.+.|+|||++++
T Consensus       116 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i  149 (263)
T 3pfg_A          116 CMFSSIGHLAGQAELDAALERFAAHVLPDGVVVV  149 (263)
T ss_dssp             ECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             EcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            764 1        223579999999999999987

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=99.38  E-value=1.6e-13  Score=114.26  Aligned_cols=183  Identities=15%  Similarity=0.177  Sum_probs=112.9

Q ss_pred             cCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCC---
Q 026506           12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSH---   87 (237)
Q Consensus        12 ~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~---   87 (237)
                      ....|++||||.+.+..+        ||.|..|+.|..+.|..... .|..  ...|+|. |...|....  ..++.   
T Consensus        81 ~V~~~~vGdrV~~~~~~~--------cg~C~~C~~g~~~~C~~~~~-~g~~--~~~G~~aey~~v~~~~~--~~iP~~l~  147 (356)
T 1pl8_A           81 SVKHLKPGDRVAIEPGAP--------RENDEFCKMGRYNLSPSIFF-CATP--PDDGNLCRFYKHNAAFC--YKLPDNVT  147 (356)
T ss_dssp             TCCSCCTTCEEEECSEEC--------SSCCHHHHTTCGGGCTTCEE-TTBT--TBCCSCBSEEEEEGGGE--EECCTTSC
T ss_pred             CCCCCCCCCEEEEeccCC--------CCCChHHHCcCcccCCCccc-cCcC--CCCCccccEEEeehHHE--EECcCCCC
Confidence            346799999999876444        99999999999888863211 1110  0123333 333332111  11111   


Q ss_pred             --cccccccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 026506           88 --RTQILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT  163 (237)
Q Consensus        88 --~~~~~~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~  163 (237)
                        .+..+.+...+ ..+...++++|++||.+|+|+ |.++.++++..+ ..+|+++|.+++.++.+++    .|.+..++
T Consensus       148 ~~~aa~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~  222 (356)
T 1pl8_A          148 FEEGALIEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAKE----IGADLVLQ  222 (356)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTCSEEEE
T ss_pred             HHHHHhhchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----hCCCEEEc
Confidence              11122222222 234567889999999999988 888888888863 3489999999999988876    56543222


Q ss_pred             EE---EccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          164 VG---VRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       164 ~~---~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ..   ..+..+ .+......++|+||...+.. ..++.+.+.|+++|+++.++.
T Consensus       223 ~~~~~~~~~~~-~i~~~~~~g~D~vid~~g~~-~~~~~~~~~l~~~G~iv~~G~  274 (356)
T 1pl8_A          223 ISKESPQEIAR-KVEGQLGCKPEVTIECTGAE-ASIQAGIYATRSGGTLVLVGL  274 (356)
T ss_dssp             CSSCCHHHHHH-HHHHHHTSCCSEEEECSCCH-HHHHHHHHHSCTTCEEEECSC
T ss_pred             CcccccchHHH-HHHHHhCCCCCEEEECCCCh-HHHHHHHHHhcCCCEEEEEec
Confidence            21   011111 11111114699988666554 378899999999999997753

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=99.37  E-value=4e-13  Score=113.50  Aligned_cols=187  Identities=18%  Similarity=0.144  Sum_probs=114.1

Q ss_pred             cCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCC-----CCce-EEeccCcEE-EEECCCHHHHhhh
Q 026506           12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKP-----FGSM-VFSNKGGFV-YLLAPTPELWTLV   84 (237)
Q Consensus        12 ~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~g~~-~~~~~~~~~-~~~~~~~~~~~~~   84 (237)
                      ....|++||||++....+        ||.|..|+.|..+.|......     +|.. .....|+|. |...|..+.....
T Consensus        79 ~v~~~~vGDrV~~~~~~~--------cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~~~~  150 (398)
T 1kol_A           79 DVENLQIGDLVSVPFNVA--------CGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLK  150 (398)
T ss_dssp             TCCSCCTTCEEECCSEEC--------CSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHHCEE
T ss_pred             CCCcCCCCCEEEECCcCC--------CCCChHHhCcCcccCCCcccccccceeeeccCCCCCceeeeEEEecchhCeEEE
Confidence            346799999999865334        999999999998888743210     1100 001124444 4555543211122


Q ss_pred             cCCc----------ccccccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026506           85 LSHR----------TQILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASARED  152 (237)
Q Consensus        85 ~~~~----------~~~~~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~  152 (237)
                      ++..          +.+..+...+ ..+...++++|++||.+|+|+ |.+++++++.++ ..+|+++|.+++.++.+++ 
T Consensus       151 ~P~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~G-a~~Vi~~~~~~~~~~~a~~-  228 (398)
T 1kol_A          151 LPDRDKAMEKIRDLTCLSDILPTGYHGAVTAGVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKA-  228 (398)
T ss_dssp             CSCHHHHHHTHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH-
T ss_pred             CCCCcchhhhcccccccccHHHHHHHHHHHcCCCCCCEEEEECCcHHHHHHHHHHHHCC-CCeEEEEcCCHHHHHHHHH-
Confidence            2221          1111122122 244567889999999999988 888899998863 3589999999999998876 


Q ss_pred             HHHcCCCCcEEEEEcc-ccCCCCCC-CCCCCCCEEEEeCCChh--------------chHHHHHhcccCCCEEEEEe
Q 026506          153 FERTGVSSFVTVGVRD-IQGQGFPD-EFSGLADSIFLDLPQPW--------------LAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       153 ~~~~~~~~~i~~~~~d-~~~~~~~~-~~~~~~D~v~~~~~~~~--------------~~l~~~~~~L~~gG~l~~~~  213 (237)
                         +|.+ .++....+ +.+ .+.. ..+.++|+||.......              ..++.+.+.|+++|++++++
T Consensus       229 ---lGa~-~i~~~~~~~~~~-~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G  300 (398)
T 1kol_A          229 ---QGFE-IADLSLDTPLHE-QIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  300 (398)
T ss_dssp             ---TTCE-EEETTSSSCHHH-HHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             ---cCCc-EEccCCcchHHH-HHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence               5642 12211111 110 0111 11146999887655431              37899999999999998775

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.37  E-value=8.6e-13  Score=111.40  Aligned_cols=105  Identities=23%  Similarity=0.218  Sum_probs=85.5

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC--CCCCCCCE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD--EFSGLADS  184 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~--~~~~~~D~  184 (237)
                      +++.+|||+|||+|.++..++..  +..+|+++|+++.+++.|++++..+++.+++++..+|+.+. .+.  .....||+
T Consensus       216 ~~~~~VLDl~~G~G~~~~~la~~--g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~-~~~~~~~~~~fD~  292 (396)
T 2as0_A          216 QPGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEE-MEKLQKKGEKFDI  292 (396)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH-HHHHHHTTCCEEE
T ss_pred             hCCCeEEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHH-HHHHHhhCCCCCE
Confidence            47899999999999999998875  34699999999999999999999998874599999998752 110  00257999


Q ss_pred             EEEeCCC--------------hhchHHHHHhcccCCCEEEEEeC
Q 026506          185 IFLDLPQ--------------PWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       185 v~~~~~~--------------~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      |++|+|.              ...++..+.+.|+|||.+++.+.
T Consensus       293 Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  336 (396)
T 2as0_A          293 VVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC  336 (396)
T ss_dssp             EEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            9999875              23578889999999999886654

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.37  E-value=2.5e-12  Score=106.52  Aligned_cols=118  Identities=16%  Similarity=0.165  Sum_probs=91.5

Q ss_pred             CCCCCCEEEEEccCccHHHHHHHHHhCCC----cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506          105 ELVPGCLVLESGTGSGSLTTSLARAVAPT----GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG  180 (237)
Q Consensus       105 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~----~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  180 (237)
                      ...++.+|||+|||+|.++..++..+...    .+++++|+++.+++.|+.++...+. + +++..+|... ....   +
T Consensus       127 ~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~-~~i~~~D~l~-~~~~---~  200 (344)
T 2f8l_A          127 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-K-MTLLHQDGLA-NLLV---D  200 (344)
T ss_dssp             TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-C-CEEEESCTTS-CCCC---C
T ss_pred             CCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-C-ceEEECCCCC-cccc---C
Confidence            45577899999999999999998886332    6899999999999999999988776 3 7889999874 2232   6


Q ss_pred             CCCEEEEeCCCh-----------------------hchHHHHHhcccCCCEEEEEeCCH----HHHHHHHHHHHh
Q 026506          181 LADSIFLDLPQP-----------------------WLAIPSAKKMLKQDGILCSFSPCI----EQVQRSCESLRL  228 (237)
Q Consensus       181 ~~D~v~~~~~~~-----------------------~~~l~~~~~~L~~gG~l~~~~~~~----~~~~~~~~~l~~  228 (237)
                      .||+|+.++|-.                       ..+++.+.+.|+|||+++++.|..    .+...+.+.+.+
T Consensus       201 ~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~  275 (344)
T 2f8l_A          201 PVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKK  275 (344)
T ss_dssp             CEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHH
T ss_pred             CccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHh
Confidence            799999998810                       136899999999999999887432    234455555554

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.37  E-value=2e-12  Score=99.52  Aligned_cols=95  Identities=22%  Similarity=0.178  Sum_probs=77.4

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL  187 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~  187 (237)
                      ++.+|||+|||+|.++..+     +..+++++|+++.+++.++++.     .+ +.+..+|+.+.+++.   +.||+|++
T Consensus        36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~-----~~-~~~~~~d~~~~~~~~---~~fD~v~~  101 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA-----PE-ATWVRAWGEALPFPG---ESFDVVLL  101 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC-----TT-SEEECCCTTSCCSCS---SCEEEEEE
T ss_pred             CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC-----CC-cEEEEcccccCCCCC---CcEEEEEE
Confidence            7889999999999988666     2238999999999999999874     23 788889987654444   68999987


Q ss_pred             eC-----CChhchHHHHHhcccCCCEEEEEeCCH
Q 026506          188 DL-----PQPWLAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       188 ~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                      ..     +++..+++++.+.|||||.+++..+..
T Consensus       102 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  135 (211)
T 2gs9_A          102 FTTLEFVEDVERVLLEARRVLRPGGALVVGVLEA  135 (211)
T ss_dssp             ESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             cChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            53     456678999999999999999887654

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=99.37  E-value=4.5e-13  Score=112.46  Aligned_cols=185  Identities=17%  Similarity=0.143  Sum_probs=112.4

Q ss_pred             cCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccc------cCC--CCce-EEe---------ccCcEE-E
Q 026506           12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWI------GKP--FGSM-VFS---------NKGGFV-Y   72 (237)
Q Consensus        12 ~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------~~~--~g~~-~~~---------~~~~~~-~   72 (237)
                      ....|++||||+.....+        ||.|..|+.|..+.|+..      |..  .|.. ...         ..|+|. |
T Consensus        80 ~v~~~~vGdrV~~~~~~~--------Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~~~g~~~~~~~~~G~~aey  151 (378)
T 3uko_A           80 GVTEVQAGDHVIPCYQAE--------CRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQY  151 (378)
T ss_dssp             TCCSCCTTCEEEECSSCC--------CSSSHHHHHTSCSCCCSSHHHHTTTCCTTTSSCSEEETTEEEBCCTTTCCSBSE
T ss_pred             CCCcCCCCCEEEEecCCC--------CCCChhhhCcCcCcCcCcccccccccccccCccccccCCcccccccCCcceEeE
Confidence            346799999999887667        999999999999888742      110  1100 000         012333 3


Q ss_pred             EECCCHHHHhhhcCC-----cccccc-cccHHH--HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCH
Q 026506           73 LLAPTPELWTLVLSH-----RTQILY-IADISF--VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHE  143 (237)
Q Consensus        73 ~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~--~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~  143 (237)
                      ...|....+  .++.     .+..+. +...+.  +....++++|++||.+|+|+ |.+++++++..+ ..+|+++|.++
T Consensus       152 ~~v~~~~~~--~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~G-a~~Vi~~~~~~  228 (378)
T 3uko_A          152 TVVHDVSVA--KIDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAG-ASRIIGIDIDS  228 (378)
T ss_dssp             EEEEGGGEE--ECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHT-CSCEEEECSCT
T ss_pred             EEechhheE--ECCCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCH
Confidence            333321111  1111     111111 111111  23556789999999999988 888899998874 35899999999


Q ss_pred             HHHHHHHHHHHHcCCCCcEEEE--EccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCC-CEEEEEe
Q 026506          144 QRAASAREDFERTGVSSFVTVG--VRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFS  213 (237)
Q Consensus       144 ~~~~~a~~~~~~~~~~~~i~~~--~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~  213 (237)
                      +.++.+++    .|.+..++..  ..|+.+ .+.....+++|+||.....+ ..++.+.+.|++| |++++++
T Consensus       229 ~~~~~a~~----lGa~~vi~~~~~~~~~~~-~i~~~~~gg~D~vid~~g~~-~~~~~~~~~l~~g~G~iv~~G  295 (378)
T 3uko_A          229 KKYETAKK----FGVNEFVNPKDHDKPIQE-VIVDLTDGGVDYSFECIGNV-SVMRAALECCHKGWGTSVIVG  295 (378)
T ss_dssp             THHHHHHT----TTCCEEECGGGCSSCHHH-HHHHHTTSCBSEEEECSCCH-HHHHHHHHTBCTTTCEEEECS
T ss_pred             HHHHHHHH----cCCcEEEccccCchhHHH-HHHHhcCCCCCEEEECCCCH-HHHHHHHHHhhccCCEEEEEc
Confidence            99998876    5654322211  011110 01111224799988666554 3789999999997 9998765

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.36  E-value=1.1e-12  Score=109.81  Aligned_cols=110  Identities=15%  Similarity=0.063  Sum_probs=89.3

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEEccccCCCCCCCCCCCCCEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSF-VTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      .++.+|||++||+|.+++.++...++..+|+++|+++.+++.+++|++.+++.++ +++..+|+.+. +.....+.||+|
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~-l~~~~~~~fD~V  129 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFF-LRKEWGFGFDYV  129 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH-HHSCCSSCEEEE
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHH-HHHhhCCCCcEE
Confidence            4688999999999999999998754447899999999999999999999998877 99999998641 110112579999


Q ss_pred             EEeCCCh-hchHHHHHhcccCCCEEEEEeCCHH
Q 026506          186 FLDLPQP-WLAIPSAKKMLKQDGILCSFSPCIE  217 (237)
Q Consensus       186 ~~~~~~~-~~~l~~~~~~L~~gG~l~~~~~~~~  217 (237)
                      ++|+... ..+++.+.+.|++||.|++......
T Consensus       130 ~lDP~g~~~~~l~~a~~~Lk~gGll~~t~t~~~  162 (392)
T 3axs_A          130 DLDPFGTPVPFIESVALSMKRGGILSLTATDTA  162 (392)
T ss_dssp             EECCSSCCHHHHHHHHHHEEEEEEEEEEECCHH
T ss_pred             EECCCcCHHHHHHHHHHHhCCCCEEEEEecchh
Confidence            9998543 3589999999999998887664433

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.36  E-value=1.5e-12  Score=109.35  Aligned_cols=106  Identities=17%  Similarity=0.166  Sum_probs=83.9

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEccccCCCCCC--CCCCCCC
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS-FVTVGVRDIQGQGFPD--EFSGLAD  183 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~~~--~~~~~~D  183 (237)
                      .++.+|||+|||+|.+++.++..  +..+|+++|+++.+++.|++|++.+++.+ ++++..+|+.+. ++.  ..+..||
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~--ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~-l~~~~~~~~~fD  287 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDY-FKYARRHHLTYD  287 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHT--TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHH-HHHHHHTTCCEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHH-HHHHHHhCCCcc
Confidence            57889999999999999988874  34689999999999999999999999874 599999998641 111  0115799


Q ss_pred             EEEEeCCCh--------------hchHHHHHhcccCCCEEEEEeCC
Q 026506          184 SIFLDLPQP--------------WLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       184 ~v~~~~~~~--------------~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      +|++|+|..              .+++..+.+.|+|||.+++....
T Consensus       288 ~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~  333 (385)
T 2b78_A          288 IIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA  333 (385)
T ss_dssp             EEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            999998752              12456678999999999877543

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.36  E-value=5.5e-12  Score=101.63  Aligned_cols=131  Identities=15%  Similarity=0.073  Sum_probs=85.1

Q ss_pred             HhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeC-CHHHHHHHHHHH-----HHcCCC----CcEEEEEccccC
Q 026506          102 MYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDF-HEQRAASAREDF-----ERTGVS----SFVTVGVRDIQG  171 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~-~~~~~~~a~~~~-----~~~~~~----~~i~~~~~d~~~  171 (237)
                      ......++.+|||+|||+|.+++.++..  +..+|+++|+ ++.+++.+++++     ..+++.    .++++...|..+
T Consensus        73 ~~~~~~~~~~vLDlG~G~G~~~~~~a~~--~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~  150 (281)
T 3bzb_A           73 WQPELIAGKTVCELGAGAGLVSIVAFLA--GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGD  150 (281)
T ss_dssp             HCGGGTTTCEEEETTCTTSHHHHHHHHT--TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTS
T ss_pred             hcchhcCCCeEEEecccccHHHHHHHHc--CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCC
Confidence            3334467889999999999999877764  3358999999 899999999998     444443    237777665542


Q ss_pred             C--CCCCC-CCCCCCEEEE-eCC----ChhchHHHHHhccc---C--CCEEEEE-eCCHH----HHHHHHHHHHh-c-Cc
Q 026506          172 Q--GFPDE-FSGLADSIFL-DLP----QPWLAIPSAKKMLK---Q--DGILCSF-SPCIE----QVQRSCESLRL-N-FT  231 (237)
Q Consensus       172 ~--~~~~~-~~~~~D~v~~-~~~----~~~~~l~~~~~~L~---~--gG~l~~~-~~~~~----~~~~~~~~l~~-~-f~  231 (237)
                      .  .+... ..+.||+|+. +..    ....+++.+.+.|+   |  ||++++. .+...    ...++.+.+++ | |.
T Consensus       151 ~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~  230 (281)
T 3bzb_A          151 SPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALI  230 (281)
T ss_dssp             CTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTEE
T ss_pred             ccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEE
Confidence            1  11000 1267999986 432    33468899999999   9  9987654 44322    24566667776 7 76


Q ss_pred             ccc
Q 026506          232 GKE  234 (237)
Q Consensus       232 ~v~  234 (237)
                      ..+
T Consensus       231 v~~  233 (281)
T 3bzb_A          231 AEP  233 (281)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.36  E-value=1.2e-12  Score=105.92  Aligned_cols=105  Identities=12%  Similarity=0.063  Sum_probs=75.1

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHh---CCCcEE--EEEeCCHHHHHHHHHHHHHc-CCCCcEEE--EEccccCC-----
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAV---APTGHV--YTFDFHEQRAASAREDFERT-GVSSFVTV--GVRDIQGQ-----  172 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~---~~~~~v--~~vD~~~~~~~~a~~~~~~~-~~~~~i~~--~~~d~~~~-----  172 (237)
                      ..++.+|||+|||+|.++..++..+   .+...+  +++|+|++|++.|++++... +..+ +.+  ...++.+.     
T Consensus        50 ~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~  128 (292)
T 2aot_A           50 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLEN-VKFAWHKETSSEYQSRML  128 (292)
T ss_dssp             TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTT-EEEEEECSCHHHHHHHHH
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCc-ceEEEEecchhhhhhhhc
Confidence            3567899999999998776544332   234544  99999999999999987653 4444 544  34444321     


Q ss_pred             -CCCCCCCCCCCEEEEe-----CCChhchHHHHHhcccCCCEEEEEeC
Q 026506          173 -GFPDEFSGLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       173 -~~~~~~~~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                       +++.   +.||+|++.     .+++..+++++.+.|||||++++...
T Consensus       129 ~~~~~---~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~  173 (292)
T 2aot_A          129 EKKEL---QKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVV  173 (292)
T ss_dssp             TTTCC---CCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cccCC---CceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence             1233   689999864     46777899999999999999987643

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=99.36  E-value=1.4e-13  Score=114.51  Aligned_cols=185  Identities=17%  Similarity=0.178  Sum_probs=114.3

Q ss_pred             cCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccc--cCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc
Q 026506           12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWI--GKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR   88 (237)
Q Consensus        12 ~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   88 (237)
                      -...|++||||++.+..+        |+.|..|+.|...+|.-.  +...+.   ...|+|. |...|..+......+..
T Consensus        71 ~v~~~~vGdrV~~~~~~~--------c~~c~~c~~g~~~~~~~~~~~~~~~~---~~~G~~aey~~v~~~~~~~~~iP~~  139 (352)
T 3fpc_A           71 EVKDFKPGDRVVVPAITP--------DWRTSEVQRGYHQHSGGMLAGWKFSN---VKDGVFGEFFHVNDADMNLAHLPKE  139 (352)
T ss_dssp             TCCSCCTTCEEEECSBCC--------CSSSHHHHTTCGGGTTSTTTTBCBTT---TBCCSSBSCEEESSHHHHCEECCTT
T ss_pred             CCCcCCCCCEEEEccccC--------CCCchhhcCCCcCCcccccccccccc---CCCCcccceEEeccccCeEEECCCC
Confidence            346799999999977666        899999999987666421  111111   1234444 44444432122222211


Q ss_pred             -----cccc-ccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC
Q 026506           89 -----TQIL-YIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS  160 (237)
Q Consensus        89 -----~~~~-~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~  160 (237)
                           +..+ .+...+ ..+...++++|++||.+|+|+ |.++.++++..+ ..+|+++|.+++.++.+++    +|.+.
T Consensus       140 ~~~~~aa~~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~----lGa~~  214 (352)
T 3fpc_A          140 IPLEAAVMIPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGANHLG-AGRIFAVGSRKHCCDIALE----YGATD  214 (352)
T ss_dssp             SCHHHHTTTTTHHHHHHHHHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTT-CSSEEEECCCHHHHHHHHH----HTCCE
T ss_pred             CCHHHHhhccchhHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----hCCce
Confidence                 1112 122222 245677899999999999988 888888888763 3489999999999998877    46543


Q ss_pred             cEEEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          161 FVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       161 ~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .++....|+.+.......+.++|+||.....+ ..++.+.+.|+++|+++.++
T Consensus       215 vi~~~~~~~~~~v~~~t~g~g~D~v~d~~g~~-~~~~~~~~~l~~~G~~v~~G  266 (352)
T 3fpc_A          215 IINYKNGDIVEQILKATDGKGVDKVVIAGGDV-HTFAQAVKMIKPGSDIGNVN  266 (352)
T ss_dssp             EECGGGSCHHHHHHHHTTTCCEEEEEECSSCT-THHHHHHHHEEEEEEEEECC
T ss_pred             EEcCCCcCHHHHHHHHcCCCCCCEEEECCCCh-HHHHHHHHHHhcCCEEEEec
Confidence            22222222221000001124699987655543 47899999999999998664

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.36  E-value=1.2e-12  Score=104.60  Aligned_cols=103  Identities=20%  Similarity=0.263  Sum_probs=83.0

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      .++.+|||+|||+|.++..++... +..+++++|+++.+++.|+++.     .+ +.+...|+.+.+++.   +.||+|+
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~-----~~-~~~~~~d~~~~~~~~---~~fD~v~  153 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY-----PQ-VTFCVASSHRLPFSD---TSMDAII  153 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC-----TT-SEEEECCTTSCSBCT---TCEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhC-----CC-cEEEEcchhhCCCCC---CceeEEE
Confidence            578899999999999999998875 3479999999999999998863     23 778888987644444   6899998


Q ss_pred             EeCCChhchHHHHHhcccCCCEEEEEeCCHHHHHH
Q 026506          187 LDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQR  221 (237)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~  221 (237)
                      ....  ...++++.+.|+|||++++..+......+
T Consensus       154 ~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~  186 (269)
T 1p91_A          154 RIYA--PCKAEELARVVKPGGWVITATPGPRHLME  186 (269)
T ss_dssp             EESC--CCCHHHHHHHEEEEEEEEEEEECTTTTHH
T ss_pred             EeCC--hhhHHHHHHhcCCCcEEEEEEcCHHHHHH
Confidence            7543  34799999999999999988876654433

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.36  E-value=7.4e-12  Score=102.31  Aligned_cols=109  Identities=14%  Similarity=0.079  Sum_probs=83.6

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC------CCCcEEEEEccccCCC----CCC
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG------VSSFVTVGVRDIQGQG----FPD  176 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~------~~~~i~~~~~d~~~~~----~~~  176 (237)
                      .++.+|||+|||+|.++..++..  +..+++++|+++.+++.++++....+      ...++++..+|+....    ++.
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~  110 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRD  110 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSS
T ss_pred             CCCCEEEEECCCCcHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhccc
Confidence            47789999999999999888874  45799999999999999999876542      1224899999998643    321


Q ss_pred             CCCCCCCEEEEeCCC---------hhchHHHHHhcccCCCEEEEEeCCHHH
Q 026506          177 EFSGLADSIFLDLPQ---------PWLAIPSAKKMLKQDGILCSFSPCIEQ  218 (237)
Q Consensus       177 ~~~~~~D~v~~~~~~---------~~~~l~~~~~~L~~gG~l~~~~~~~~~  218 (237)
                       ..+.||+|++...-         ...+++++.+.|+|||.+++..+....
T Consensus       111 -~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~  160 (313)
T 3bgv_A          111 -PQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFE  160 (313)
T ss_dssp             -TTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHH
T ss_pred             -CCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHH
Confidence             11589999875432         236899999999999999988887654

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.36  E-value=7.9e-12  Score=103.90  Aligned_cols=128  Identities=16%  Similarity=0.160  Sum_probs=96.5

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ++...+..+..+|+|+|||+|.++..+++.. |..+++..|. |+.++.+++++...+ .+++++..+|+.+.+.     
T Consensus       171 ~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~-p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~~-----  242 (353)
T 4a6d_A          171 VLTAFDLSVFPLMCDLGGGAGALAKECMSLY-PGCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKDPL-----  242 (353)
T ss_dssp             HHHSSCGGGCSEEEEETCTTSHHHHHHHHHC-SSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTSCC-----
T ss_pred             HHHhcCcccCCeEEeeCCCCCHHHHHHHHhC-CCceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccCCC-----
Confidence            4555667778899999999999999999986 6678999997 899999998876544 3459999999985332     


Q ss_pred             CCCCEEEE-----eCCCh--hchHHHHHhcccCCCEEEEEeCCHH-------------------------HHHHHHHHHH
Q 026506          180 GLADSIFL-----DLPQP--WLAIPSAKKMLKQDGILCSFSPCIE-------------------------QVQRSCESLR  227 (237)
Q Consensus       180 ~~~D~v~~-----~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~-------------------------~~~~~~~~l~  227 (237)
                      ..+|++++     +.++.  ..+|+++.+.|+|||++++......                         +.++|.+.++
T Consensus       243 ~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~  322 (353)
T 4a6d_A          243 PEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLS  322 (353)
T ss_dssp             CCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHH
T ss_pred             CCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHH
Confidence            45899876     33433  3579999999999999998753211                         1356667777


Q ss_pred             h-cCccccc
Q 026506          228 L-NFTGKES  235 (237)
Q Consensus       228 ~-~f~~v~~  235 (237)
                      + ||+.+++
T Consensus       323 ~AGf~~v~v  331 (353)
T 4a6d_A          323 SAGFRDFQF  331 (353)
T ss_dssp             HHTCEEEEE
T ss_pred             HCCCceEEE
Confidence            7 8887764

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.35  E-value=3.8e-12  Score=113.87  Aligned_cols=113  Identities=15%  Similarity=0.041  Sum_probs=87.4

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc------CCCCcEEEEEccccCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT------GVSSFVTVGVRDIQGQ  172 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~~i~~~~~d~~~~  172 (237)
                      .++..+...++.+|||+|||+|.++..+++..++..+|+++|+++.+++.|++++...      +.. ++++..+|+.+.
T Consensus       712 ~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~-nVefiqGDa~dL  790 (950)
T 3htx_A          712 YALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVK-SATLYDGSILEF  790 (950)
T ss_dssp             HHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCS-EEEEEESCTTSC
T ss_pred             HHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCC-ceEEEECchHhC
Confidence            3555666668899999999999999998877434479999999999999999976532      344 499999999875


Q ss_pred             CCCCCCCCCCCEEEEeC-----CChh--chHHHHHhcccCCCEEEEEeCCH
Q 026506          173 GFPDEFSGLADSIFLDL-----PQPW--LAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       173 ~~~~~~~~~~D~v~~~~-----~~~~--~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                      .+..   +.||+|++..     +++.  .+++++.+.|+|| .+++..|..
T Consensus       791 p~~d---~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~  837 (950)
T 3htx_A          791 DSRL---HDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY  837 (950)
T ss_dssp             CTTS---CSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred             Cccc---CCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence            5544   7899998743     2222  4789999999999 777666654

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.35  E-value=1.5e-12  Score=109.46  Aligned_cols=103  Identities=23%  Similarity=0.156  Sum_probs=85.4

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC--CCCCCCEE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE--FSGLADSI  185 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~--~~~~~D~v  185 (237)
                      ++.+|||+|||+|.++..++..   ..+|+++|+++.+++.|+++++.+++.+ +++..+|+.+. ++..  ....||+|
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~-~~~~~~~~~~fD~I  283 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDL-LRRLEKEGERFDLV  283 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHH-HHHHHHTTCCEEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHH-HHHHHhcCCCeeEE
Confidence            7889999999999999999887   3789999999999999999999999887 99999998751 1100  02679999


Q ss_pred             EEeCCCh--------------hchHHHHHhcccCCCEEEEEeCC
Q 026506          186 FLDLPQP--------------WLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       186 ~~~~~~~--------------~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      ++|+|..              ..++..+.+.|+|||.+++.+..
T Consensus       284 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  327 (382)
T 1wxx_A          284 VLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  327 (382)
T ss_dssp             EECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            9998751              34788899999999999877543

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=99.35  E-value=9.4e-13  Score=110.22  Aligned_cols=186  Identities=15%  Similarity=0.102  Sum_probs=112.3

Q ss_pred             cCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeecccccc---C-------------CCCceE---EeccCcEE-
Q 026506           12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIG---K-------------PFGSMV---FSNKGGFV-   71 (237)
Q Consensus        12 ~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~-------------~~g~~~---~~~~~~~~-   71 (237)
                      -...|++||||++.+ .+        ||.|..|+.|..+.|+...   .             ..|...   ....|+|. 
T Consensus        77 ~v~~~~~GdrV~~~~-~~--------Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~~g~~~~~~~~~~G~~ae  147 (371)
T 1f8f_A           77 NVTELQVGDHVVLSY-GY--------CGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFAT  147 (371)
T ss_dssp             TCCSCCTTCEEEECC-CC--------CSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBS
T ss_pred             CCCCCCCCCEEEecC-CC--------CCCChhhhCcCccccccccccccccccccccccccccCCccccccccCCccccC
Confidence            346799999999977 77        9999999999988886321   0             001000   00124444 


Q ss_pred             EEECCCHHHHhh--hcC-Ccccccc-cccHHH-HH-HhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHH
Q 026506           72 YLLAPTPELWTL--VLS-HRTQILY-IADISF-VI-MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQ  144 (237)
Q Consensus        72 ~~~~~~~~~~~~--~~~-~~~~~~~-~~~~~~-~~-~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~  144 (237)
                      |...|....+..  .++ ..+..+. +...+. .+ ...++++|++||.+|+|+ |.++.++++..+ ..+|+++|.+++
T Consensus       148 y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~G-a~~Vi~~~~~~~  226 (371)
T 1f8f_A          148 YALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVES  226 (371)
T ss_dssp             EEEEEGGGEEEECTTSCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHH
T ss_pred             eEEechhheEECCCCCCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHH
Confidence            333332211110  111 1111221 222221 22 456789999999999988 888889988874 347999999999


Q ss_pred             HHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          145 RAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       145 ~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .++.+++    +|.+..++....|+.+ .+.....+++|+||...... ..++.+.+.|+++|+++.++
T Consensus       227 ~~~~a~~----lGa~~vi~~~~~~~~~-~~~~~~~gg~D~vid~~g~~-~~~~~~~~~l~~~G~iv~~G  289 (371)
T 1f8f_A          227 RLELAKQ----LGATHVINSKTQDPVA-AIKEITDGGVNFALESTGSP-EILKQGVDALGILGKIAVVG  289 (371)
T ss_dssp             HHHHHHH----HTCSEEEETTTSCHHH-HHHHHTTSCEEEEEECSCCH-HHHHHHHHTEEEEEEEEECC
T ss_pred             HHHHHHH----cCCCEEecCCccCHHH-HHHHhcCCCCcEEEECCCCH-HHHHHHHHHHhcCCEEEEeC
Confidence            9998876    4654322221112111 11111124799987665543 47899999999999999775

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.35  E-value=6.1e-12  Score=101.54  Aligned_cols=90  Identities=26%  Similarity=0.309  Sum_probs=73.9

Q ss_pred             cHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCC
Q 026506           96 DISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP  175 (237)
Q Consensus        96 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  175 (237)
                      ....++..+.+.++++|||+|||+|.++..++...   .+++++|+++.+++.+++++...+...++++..+|+.+..+ 
T Consensus        16 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~-   91 (285)
T 1zq9_A           16 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL-   91 (285)
T ss_dssp             HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC-
T ss_pred             HHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccc-
Confidence            33457778888899999999999999999999872   68999999999999999998766654459999999976333 


Q ss_pred             CCCCCCCCEEEEeCCChh
Q 026506          176 DEFSGLADSIFLDLPQPW  193 (237)
Q Consensus       176 ~~~~~~~D~v~~~~~~~~  193 (237)
                          ..||+|+.+.|-.+
T Consensus        92 ----~~fD~vv~nlpy~~  105 (285)
T 1zq9_A           92 ----PFFDTCVANLPYQI  105 (285)
T ss_dssp             ----CCCSEEEEECCGGG
T ss_pred             ----hhhcEEEEecCccc
Confidence                36999999887543

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.34  E-value=7.7e-13  Score=106.50  Aligned_cols=112  Identities=14%  Similarity=0.049  Sum_probs=82.7

Q ss_pred             cCCCCCCEEEEEcc------CccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE-EEccccCCCCCC
Q 026506          104 LELVPGCLVLESGT------GSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV-GVRDIQGQGFPD  176 (237)
Q Consensus       104 ~~~~~~~~vldiG~------G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~-~~~d~~~~~~~~  176 (237)
                      +.++++.+|||+||      |+|.  ..+++..++.++|+++|+++.             +.+ +++ .++|+.+..++ 
T Consensus        59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v~~-v~~~i~gD~~~~~~~-  121 (290)
T 2xyq_A           59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------VSD-ADSTLIGDCATVHTA-  121 (290)
T ss_dssp             CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------BCS-SSEEEESCGGGCCCS-
T ss_pred             cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------CCC-CEEEEECccccCCcc-
Confidence            45788999999999      4466  445556554689999999987             123 677 89999753332 


Q ss_pred             CCCCCCCEEEEeCCChh----------------chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCccccc
Q 026506          177 EFSGLADSIFLDLPQPW----------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGKES  235 (237)
Q Consensus       177 ~~~~~~D~v~~~~~~~~----------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~~  235 (237)
                         +.||+|++|+...+                .+++.+.+.|||||.+++........+++.+.+++ +|..+++
T Consensus       122 ---~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v~~  194 (290)
T 2xyq_A          122 ---NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFV  194 (290)
T ss_dssp             ---SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEE
T ss_pred             ---CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcEEEE
Confidence               67999999754221                47889999999999999866555455678888888 6876654

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=99.34  E-value=6.3e-13  Score=110.95  Aligned_cols=183  Identities=18%  Similarity=0.101  Sum_probs=112.6

Q ss_pred             cCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhh-cC-Cc
Q 026506           12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLV-LS-HR   88 (237)
Q Consensus        12 ~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~-~~-~~   88 (237)
                      -...|++||||++.+..+        ||.|..|+.|..+.|..... .|.  ....|++. |...|....+... ++ ..
T Consensus        90 ~v~~~~vGdrV~~~~~~~--------cg~C~~c~~g~~~~c~~~~~-~g~--~~~~G~~aey~~v~~~~~~~iP~~s~~~  158 (363)
T 3m6i_A           90 SVKSIKVGDRVAIEPQVI--------CNACEPCLTGRYNGCERVDF-LST--PPVPGLLRRYVNHPAVWCHKIGNMSYEN  158 (363)
T ss_dssp             TCCSCCTTCEEEECCEEC--------CSCSHHHHTTCGGGCTTCEE-TTS--TTSCCSCBSEEEEEGGGEEECTTCCHHH
T ss_pred             CCCCCCCCCEEEEecccC--------CCCCHHHHCcCcccCCCccc-cCC--CCCCccceeEEEEehhhEEECCCCCHHH
Confidence            346799999999976444        99999999999888864321 110  00123333 3333321111000 11 11


Q ss_pred             ccccccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 026506           89 TQILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV  166 (237)
Q Consensus        89 ~~~~~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~  166 (237)
                      +..+.+...+ ..+...++++|++||.+|+|+ |.+++++++..+ ..+|+++|.+++.++.+++.     .+..+.+..
T Consensus       159 aa~~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~l-----~~~~~~~~~  232 (363)
T 3m6i_A          159 GAMLEPLSVALAGLQRAGVRLGDPVLICGAGPIGLITMLCAKAAG-ACPLVITDIDEGRLKFAKEI-----CPEVVTHKV  232 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCTTCCEEEECCSHHHHHHHHHHHHTT-CCSEEEEESCHHHHHHHHHH-----CTTCEEEEC
T ss_pred             HHhhhHHHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHh-----chhcccccc
Confidence            1122222222 244667899999999999988 888899998863 34599999999999999874     222244331


Q ss_pred             -----ccccCCCCCC-CCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          167 -----RDIQGQGFPD-EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       167 -----~d~~~~~~~~-~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                           .|+.+ .+.. ..+.++|+||.....+ ..++.+.+.|+++|++++++
T Consensus       233 ~~~~~~~~~~-~v~~~t~g~g~Dvvid~~g~~-~~~~~~~~~l~~~G~iv~~G  283 (363)
T 3m6i_A          233 ERLSAEESAK-KIVESFGGIEPAVALECTGVE-SSIAAAIWAVKFGGKVFVIG  283 (363)
T ss_dssp             CSCCHHHHHH-HHHHHTSSCCCSEEEECSCCH-HHHHHHHHHSCTTCEEEECC
T ss_pred             cccchHHHHH-HHHHHhCCCCCCEEEECCCCh-HHHHHHHHHhcCCCEEEEEc
Confidence                 12211 0110 1125799988666544 37899999999999999775

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.34  E-value=1.7e-11  Score=102.65  Aligned_cols=120  Identities=13%  Similarity=0.117  Sum_probs=92.4

Q ss_pred             cccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCC-------------------------------------CcEE
Q 026506           94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAP-------------------------------------TGHV  136 (237)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~-------------------------------------~~~v  136 (237)
                      +..++.++...+..++..++|.+||+|.+++..+.....                                     ..++
T Consensus       180 e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v  259 (384)
T 3ldg_A          180 ENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDI  259 (384)
T ss_dssp             HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred             HHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceE
Confidence            333445677888889999999999999999888765421                                     1469


Q ss_pred             EEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCCh---------hchHHHHHhcccC--
Q 026506          137 YTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP---------WLAIPSAKKMLKQ--  205 (237)
Q Consensus       137 ~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~---------~~~l~~~~~~L~~--  205 (237)
                      +++|+++.+++.|++|+...|+.+.+++..+|+.+...+    ..||+|+.|+|--         ..+...+.+.||+  
T Consensus       260 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~----~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~  335 (384)
T 3ldg_A          260 SGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN----KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLK  335 (384)
T ss_dssp             EEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC----CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCT
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc----CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCC
Confidence            999999999999999999999887799999999863322    5799999998821         1234444455554  


Q ss_pred             CCEEEEEeCCHH
Q 026506          206 DGILCSFSPCIE  217 (237)
Q Consensus       206 gG~l~~~~~~~~  217 (237)
                      ||.++++++..+
T Consensus       336 g~~~~iit~~~~  347 (384)
T 3ldg_A          336 TWSQFILTNDTD  347 (384)
T ss_dssp             TSEEEEEESCTT
T ss_pred             CcEEEEEECCHH
Confidence            999999988554

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.33  E-value=2.1e-12  Score=116.12  Aligned_cols=105  Identities=17%  Similarity=0.131  Sum_probs=85.0

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS-SFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      .+|.+|||+|||+|.+++.++..  +..+|+++|+|+.+++.|++|++.+++. .++++..+|+.+. ++. ..+.||+|
T Consensus       538 ~~g~~VLDlg~GtG~~sl~aa~~--ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~-l~~-~~~~fD~I  613 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSATVHAGLG--GARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAW-LRE-ANEQFDLI  613 (703)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHH-HHH-CCCCEEEE
T ss_pred             cCCCcEEEeeechhHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH-HHh-cCCCccEE
Confidence            36889999999999999888764  4568999999999999999999999987 4699999998751 111 12679999


Q ss_pred             EEeCCCh----------------hchHHHHHhcccCCCEEEEEeCC
Q 026506          186 FLDLPQP----------------WLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       186 ~~~~~~~----------------~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      ++|+|..                ..++..+.+.|+|||++++....
T Consensus       614 i~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          614 FIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             EECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            9998742                13588899999999999955543

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.33  E-value=3e-12  Score=107.03  Aligned_cols=103  Identities=17%  Similarity=0.141  Sum_probs=85.8

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc---------------CCCCcEEEEEccccCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT---------------GVSSFVTVGVRDIQGQ  172 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~---------------~~~~~i~~~~~d~~~~  172 (237)
                      ++.+|||+|||+|..++.++...+ ..+|+++|+++++++.+++|++.+               ++.+ +++..+|+.. 
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~-i~v~~~Da~~-  123 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKT-IVINHDDANR-  123 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSE-EEEEESCHHH-
T ss_pred             CCCEEEECCCchhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCc-eEEEcCcHHH-
Confidence            688999999999999999998863 467999999999999999999998               7766 9999999864 


Q ss_pred             CCCCCCCCCCCEEEEeCCCh-hchHHHHHhcccCCCEEEEEeC
Q 026506          173 GFPDEFSGLADSIFLDLPQP-WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       173 ~~~~~~~~~~D~v~~~~~~~-~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                       +.......||+|++|++.. ..+++.+.+.|++||.+++...
T Consensus       124 -~~~~~~~~fD~I~lDP~~~~~~~l~~a~~~lk~gG~l~vt~t  165 (378)
T 2dul_A          124 -LMAERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTAT  165 (378)
T ss_dssp             -HHHHSTTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             -HHHhccCCCCEEEeCCCCCHHHHHHHHHHhcCCCCEEEEEee
Confidence             1111125799999998754 5689999999999998886654

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=99.33  E-value=2.5e-12  Score=107.70  Aligned_cols=187  Identities=13%  Similarity=0.105  Sum_probs=113.0

Q ss_pred             cCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCC--Cc-------------eEEe--ccCcEE-EE
Q 026506           12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPF--GS-------------MVFS--NKGGFV-YL   73 (237)
Q Consensus        12 ~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--g~-------------~~~~--~~~~~~-~~   73 (237)
                      ....|++||||++....+        ||.|..|+.|..+.|.......  |.             ....  ..|+|. |.
T Consensus        80 ~v~~~~vGdrV~~~~~~~--------Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~  151 (373)
T 1p0f_A           80 GVTCVKPGDKVIPLFVPQ--------CGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYT  151 (373)
T ss_dssp             TCCSCCTTCEEEECSSCC--------CSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEE
T ss_pred             CCCccCCCCEEEECCCCC--------CCCChhhcCCCcCcCcCCCcccccccccCCccccccCCcccccccCCccceeEE
Confidence            346799999999977666        9999999999988886421100  10             0000  124443 33


Q ss_pred             ECCCHHHHh--hhcCCcccccc-cccHHH--HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHH
Q 026506           74 LAPTPELWT--LVLSHRTQILY-IADISF--VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAA  147 (237)
Q Consensus        74 ~~~~~~~~~--~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~  147 (237)
                      ..|....+.  ..++..+..+. +...+.  +....++++|++||.+|+|+ |.+++++++..+ ..+|+++|.+++.++
T Consensus       152 ~v~~~~~~~iP~~l~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~  230 (373)
T 1p0f_A          152 VVADIAVAKIDPKAPLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFP  230 (373)
T ss_dssp             EEETTSEEEECTTCCGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHH
T ss_pred             EEchhhEEECCCCCChhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHH
Confidence            333221111  01111122221 111222  22456789999999999988 888889998874 348999999999999


Q ss_pred             HHHHHHHHcCCCCcEEEEE--ccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCC-CEEEEEe
Q 026506          148 SAREDFERTGVSSFVTVGV--RDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFS  213 (237)
Q Consensus       148 ~a~~~~~~~~~~~~i~~~~--~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~  213 (237)
                      .+++    +|.+..++...  .|+.+ .+.....+++|+||...... ..++.+.+.|+++ |+++.++
T Consensus       231 ~a~~----lGa~~vi~~~~~~~~~~~-~i~~~t~gg~Dvvid~~g~~-~~~~~~~~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          231 KAIE----LGATECLNPKDYDKPIYE-VICEKTNGGVDYAVECAGRI-ETMMNALQSTYCGSGVTVVLG  293 (373)
T ss_dssp             HHHH----TTCSEEECGGGCSSCHHH-HHHHHTTSCBSEEEECSCCH-HHHHHHHHTBCTTTCEEEECC
T ss_pred             HHHH----cCCcEEEecccccchHHH-HHHHHhCCCCCEEEECCCCH-HHHHHHHHHHhcCCCEEEEEc
Confidence            8876    56543222110  11111 01111124799987666543 4789999999999 9998775

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.33  E-value=2.3e-12  Score=108.76  Aligned_cols=105  Identities=22%  Similarity=0.149  Sum_probs=84.9

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CCcEEEEEccccCCCCCCC--CCCCCC
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV-SSFVTVGVRDIQGQGFPDE--FSGLAD  183 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~i~~~~~d~~~~~~~~~--~~~~~D  183 (237)
                      .++.+|||+|||+|.++..++..  +..+|+++|+++.+++.|++|+..+++ .+++++..+|+.+. ++..  ....||
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~--g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~-~~~~~~~~~~fD  295 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKL-LRTYRDRGEKFD  295 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHH-HHHHHHTTCCEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHH-HHHHHhcCCCCC
Confidence            57889999999999999998875  346999999999999999999999988 64599999998752 1100  015799


Q ss_pred             EEEEeCCCh--------------hchHHHHHhcccCCCEEEEEeC
Q 026506          184 SIFLDLPQP--------------WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       184 ~v~~~~~~~--------------~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +|++|+|..              ...+..+.+.|+|||++++...
T Consensus       296 ~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  340 (396)
T 3c0k_A          296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC  340 (396)
T ss_dssp             EEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            999998742              2568889999999999987653

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.33  E-value=1.5e-11  Score=103.33  Aligned_cols=122  Identities=9%  Similarity=0.041  Sum_probs=92.7

Q ss_pred             cccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCC-------------------------------------Cc
Q 026506           92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAP-------------------------------------TG  134 (237)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~-------------------------------------~~  134 (237)
                      +.+..++.++...+..++..+||.+||+|.+++..+.....                                     ..
T Consensus       185 l~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~  264 (393)
T 3k0b_A          185 IKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPL  264 (393)
T ss_dssp             CCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred             CcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCc
Confidence            34444455777888889999999999999999888765421                                     14


Q ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCCh---------hchHHHHHhcccC
Q 026506          135 HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP---------WLAIPSAKKMLKQ  205 (237)
Q Consensus       135 ~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~---------~~~l~~~~~~L~~  205 (237)
                      +++++|+++.+++.|++|+...++.+.+++..+|+.+...+    ..||+|+.|+|--         ..+...+.+.|++
T Consensus       265 ~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~----~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~  340 (393)
T 3k0b_A          265 NIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE----DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKR  340 (393)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC----CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC----CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhc
Confidence            69999999999999999999999887799999999863322    5799999998821         1233444445554


Q ss_pred             --CCEEEEEeCCHH
Q 026506          206 --DGILCSFSPCIE  217 (237)
Q Consensus       206 --gG~l~~~~~~~~  217 (237)
                        ||.++++++..+
T Consensus       341 ~~g~~~~iit~~~~  354 (393)
T 3k0b_A          341 MPTWSVYVLTSYEL  354 (393)
T ss_dssp             CTTCEEEEEECCTT
T ss_pred             CCCCEEEEEECCHH
Confidence              999998887554

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.33  E-value=5.1e-12  Score=98.17  Aligned_cols=102  Identities=23%  Similarity=0.368  Sum_probs=80.4

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC--CCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDE  177 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~  177 (237)
                      ++..+. .++.+|||+|||+|.++..++..  + .+++++|+++.+++.++++.        .++...|+.+  ..++. 
T Consensus        25 l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~--~-~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~-   91 (230)
T 3cc8_A           25 LLKHIK-KEWKEVLDIGCSSGALGAAIKEN--G-TRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYEE-   91 (230)
T ss_dssp             HHTTCC-TTCSEEEEETCTTSHHHHHHHTT--T-CEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSCT-
T ss_pred             HHHHhc-cCCCcEEEeCCCCCHHHHHHHhc--C-CeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCCC-
Confidence            444554 67889999999999999988876  3 78999999999999988742        2567788764  23333 


Q ss_pred             CCCCCCEEEEe-----CCChhchHHHHHhcccCCCEEEEEeCCH
Q 026506          178 FSGLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       178 ~~~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                        +.||+|++.     .+++..+++++.+.|+|||.+++..+..
T Consensus        92 --~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  133 (230)
T 3cc8_A           92 --EQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNV  133 (230)
T ss_dssp             --TCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECT
T ss_pred             --CccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence              689999874     3466778999999999999999877653

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.32  E-value=4.2e-12  Score=105.39  Aligned_cols=106  Identities=16%  Similarity=0.187  Sum_probs=80.5

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .++..++..++.+|||+|||+|.++..+++.. +..+++++|+ +..+.  +++....+..+++++..+|+. ..++   
T Consensus       175 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~-~~~p---  246 (348)
T 3lst_A          175 ILARAGDFPATGTVADVGGGRGGFLLTVLREH-PGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFL-REVP---  246 (348)
T ss_dssp             HHHHHSCCCSSEEEEEETCTTSHHHHHHHHHC-TTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTT-TCCC---
T ss_pred             HHHHhCCccCCceEEEECCccCHHHHHHHHHC-CCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCC-CCCC---
Confidence            35566677888999999999999999999885 5678999999 55444  333333344556999999997 3333   


Q ss_pred             CCCCCEEEEe-----CCCh--hchHHHHHhcccCCCEEEEEeC
Q 026506          179 SGLADSIFLD-----LPQP--WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       179 ~~~~D~v~~~-----~~~~--~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                        .||+|++.     .++.  ..+++++.+.|||||++++...
T Consensus       247 --~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~  287 (348)
T 3lst_A          247 --HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDA  287 (348)
T ss_dssp             --CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred             --CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence              69999863     3444  4789999999999999998753

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.32  E-value=1.6e-12  Score=103.44  Aligned_cols=129  Identities=15%  Similarity=0.085  Sum_probs=91.3

Q ss_pred             CCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC--------------------------
Q 026506          105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV--------------------------  158 (237)
Q Consensus       105 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--------------------------  158 (237)
                      ...++.+|||+|||+|.++..++... . .+|+++|+++.+++.+++++...+.                          
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSACES-F-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEE  130 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGGGT-E-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHH
T ss_pred             cccCCCEEEEECCCccHHHHHHhhcc-c-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHH
Confidence            44677899999999999988777552 2 5899999999999999988754321                          


Q ss_pred             --CCcE-EEEEccccCCCC-CCCCCCCCCEEEEeCC---------ChhchHHHHHhcccCCCEEEEEeCCH---------
Q 026506          159 --SSFV-TVGVRDIQGQGF-PDEFSGLADSIFLDLP---------QPWLAIPSAKKMLKQDGILCSFSPCI---------  216 (237)
Q Consensus       159 --~~~i-~~~~~d~~~~~~-~~~~~~~~D~v~~~~~---------~~~~~l~~~~~~L~~gG~l~~~~~~~---------  216 (237)
                        ...+ .+...|+.+... +....+.||+|++...         ....+++++.+.|+|||++++..+..         
T Consensus       131 ~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~  210 (265)
T 2i62_A          131 KLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQ  210 (265)
T ss_dssp             HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTE
T ss_pred             HhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCc
Confidence              0126 888999876322 2212257999987432         33468999999999999998764211         


Q ss_pred             ------HHHHHHHHHHHh-cCccccc
Q 026506          217 ------EQVQRSCESLRL-NFTGKES  235 (237)
Q Consensus       217 ------~~~~~~~~~l~~-~f~~v~~  235 (237)
                            -..+.+.+.+++ ||..+++
T Consensus       211 ~~~~~~~~~~~~~~~l~~aGf~~~~~  236 (265)
T 2i62_A          211 KFSSLPLGWETVRDAVEEAGYTIEQF  236 (265)
T ss_dssp             EEECCCCCHHHHHHHHHHTTCEEEEE
T ss_pred             cccccccCHHHHHHHHHHCCCEEEEE
Confidence                  124567777777 7876553

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=99.32  E-value=2.2e-12  Score=108.12  Aligned_cols=184  Identities=13%  Similarity=0.104  Sum_probs=111.2

Q ss_pred             CCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeecccccc----------CC-CCc--------eEEe--ccCcEE
Q 026506           13 TRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIG----------KP-FGS--------MVFS--NKGGFV   71 (237)
Q Consensus        13 ~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----------~~-~g~--------~~~~--~~~~~~   71 (237)
                      ...|++||||++....+        ||.|..|+.|..+.|....          .. .|.        ....  ..|+|.
T Consensus        80 v~~~~vGdrV~~~~~~~--------Cg~C~~C~~g~~~~C~~~~~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~a  151 (376)
T 1e3i_A           80 VTNFKPGDKVIPFFAPQ--------CKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFS  151 (376)
T ss_dssp             CCSCCTTCEEEECSSCC--------CSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSB
T ss_pred             CccCCCCCEEEECCcCC--------CCCCccccCCCcccCcCcCccccccccccccccCccccccCCcccccccCCccce
Confidence            46799999999977666        9999999999988886321          10 000        0000  124444


Q ss_pred             -EEECCCHHHHhhhcCC-----cccccc-cccHHH--HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeC
Q 026506           72 -YLLAPTPELWTLVLSH-----RTQILY-IADISF--VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDF  141 (237)
Q Consensus        72 -~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~--~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~  141 (237)
                       |...|....+  .++.     .+..+. +...+.  +....++++|++||.+|+|+ |.+++++++..+ ..+|+++|.
T Consensus       152 ey~~v~~~~~~--~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~  228 (376)
T 1e3i_A          152 QYTVVSEANLA--RVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDI  228 (376)
T ss_dssp             SEEEEEGGGEE--ECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECS
T ss_pred             eEEEeccccEE--ECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcC
Confidence             3333322111  1111     111121 111121  22456789999999999988 888888888863 348999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCcEEEEE--ccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCC-CEEEEEe
Q 026506          142 HEQRAASAREDFERTGVSSFVTVGV--RDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFS  213 (237)
Q Consensus       142 ~~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~  213 (237)
                      +++.++.+++    +|.+..++...  .|+.+ .+.....+++|+||...... ..++.+.+.|+++ |++++++
T Consensus       229 ~~~~~~~a~~----lGa~~vi~~~~~~~~~~~-~v~~~~~~g~Dvvid~~G~~-~~~~~~~~~l~~~~G~iv~~G  297 (376)
T 1e3i_A          229 NGEKFPKAKA----LGATDCLNPRELDKPVQD-VITELTAGGVDYSLDCAGTA-QTLKAAVDCTVLGWGSCTVVG  297 (376)
T ss_dssp             CGGGHHHHHH----TTCSEEECGGGCSSCHHH-HHHHHHTSCBSEEEESSCCH-HHHHHHHHTBCTTTCEEEECC
T ss_pred             CHHHHHHHHH----hCCcEEEccccccchHHH-HHHHHhCCCccEEEECCCCH-HHHHHHHHHhhcCCCEEEEEC
Confidence            9999988876    56543221110  11110 01111114799987665543 4789999999999 9998765

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=99.31  E-value=1.2e-12  Score=108.56  Aligned_cols=179  Identities=20%  Similarity=0.182  Sum_probs=109.0

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECC-CHHHHhh-hcCC-cc
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAP-TPELWTL-VLSH-RT   89 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~-~~~~~~~-~~~~-~~   89 (237)
                      ..|++||||+.....+        ||.|..|+.|..+.|.... .+|.   ...|+|. |...| ....+.. .++. .+
T Consensus        78 ~~~~~GdrV~~~~~~~--------Cg~C~~C~~g~~~~C~~~~-~~G~---~~~G~~aey~~v~~~~~~~~i~~l~~~~a  145 (344)
T 2h6e_A           78 AKVKKGDNVVVYATWG--------DLTCRYCREGKFNICKNQI-IPGQ---TTNGGFSEYMLVKSSRWLVKLNSLSPVEA  145 (344)
T ss_dssp             CCCCTTCEEEECSCBC--------CSCSTTGGGTCGGGCTTCB-CBTT---TBCCSSBSEEEESCGGGEEEESSSCHHHH
T ss_pred             CCCCCCCEEEECCCCC--------CCCChhhhCCCcccCCCcc-cccc---ccCCcceeeEEecCcccEEEeCCCCHHHh
Confidence            5799999997665455        9999999999988886321 1221   1124443 34444 2221111 0000 01


Q ss_pred             cccc-cccHH-HHHHhc-----CCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 026506           90 QILY-IADIS-FVIMYL-----ELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSF  161 (237)
Q Consensus        90 ~~~~-~~~~~-~~~~~~-----~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~  161 (237)
                      ..+. ....+ ..+...     ++ +|++||.+|+|+ |.++.++++...+..+|++++.+++.++.+++    .|.+..
T Consensus       146 a~l~~~~~ta~~al~~~~~~~~~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----lGa~~v  220 (344)
T 2h6e_A          146 APLADAGTTSMGAIRQALPFISKF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE----LGADYV  220 (344)
T ss_dssp             GGGGTHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----HTCSEE
T ss_pred             hhhhhhhHHHHHHHHhhhhcccCC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----hCCCEE
Confidence            1111 11111 233444     77 999999999987 88888888887212579999999999998876    465432


Q ss_pred             EEEEE-ccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          162 VTVGV-RDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       162 i~~~~-~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ++... .|... .+..  +.++|+||...... ..++.+.+.|+++|+++.++
T Consensus       221 i~~~~~~~~~~-~~~~--g~g~D~vid~~g~~-~~~~~~~~~l~~~G~iv~~g  269 (344)
T 2h6e_A          221 SEMKDAESLIN-KLTD--GLGASIAIDLVGTE-ETTYNLGKLLAQEGAIILVG  269 (344)
T ss_dssp             ECHHHHHHHHH-HHHT--TCCEEEEEESSCCH-HHHHHHHHHEEEEEEEEECC
T ss_pred             eccccchHHHH-Hhhc--CCCccEEEECCCCh-HHHHHHHHHhhcCCEEEEeC
Confidence            22211 22211 1111  13799988666554 37899999999999998775

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.31  E-value=2e-11  Score=102.45  Aligned_cols=120  Identities=16%  Similarity=0.141  Sum_probs=91.7

Q ss_pred             cccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCC-------------------------------------CcEE
Q 026506           94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAP-------------------------------------TGHV  136 (237)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~-------------------------------------~~~v  136 (237)
                      +..++.++...+..++..+||.+||+|.+++.++.....                                     ..+|
T Consensus       181 e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V  260 (385)
T 3ldu_A          181 ETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKI  260 (385)
T ss_dssp             HHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCE
T ss_pred             HHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceE
Confidence            333445677788889999999999999999888766311                                     1479


Q ss_pred             EEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCCh---------hchHHHHHhcccC--
Q 026506          137 YTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP---------WLAIPSAKKMLKQ--  205 (237)
Q Consensus       137 ~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~---------~~~l~~~~~~L~~--  205 (237)
                      +++|+++.+++.|++|+..+++.+.+++.++|+.+...+    ..||+|+.|+|--         ..+...+.+.|++  
T Consensus       261 ~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~----~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~  336 (385)
T 3ldu_A          261 YGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE----DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLK  336 (385)
T ss_dssp             EEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS----CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSB
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC----CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCC
Confidence            999999999999999999999876799999999863322    5799999999831         1234444455555  


Q ss_pred             CCEEEEEeCCHH
Q 026506          206 DGILCSFSPCIE  217 (237)
Q Consensus       206 gG~l~~~~~~~~  217 (237)
                      |+.++++++...
T Consensus       337 g~~~~iit~~~~  348 (385)
T 3ldu_A          337 NWSYYLITSYED  348 (385)
T ss_dssp             SCEEEEEESCTT
T ss_pred             CCEEEEEECCHH
Confidence            999998887543

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=99.31  E-value=1.8e-11  Score=98.08  Aligned_cols=126  Identities=18%  Similarity=0.190  Sum_probs=97.8

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--C--CCCcEEEEEccccCCCCCCCCCCCCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT--G--VSSFVTVGVRDIQGQGFPDEFSGLAD  183 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~--~~~~i~~~~~d~~~~~~~~~~~~~~D  183 (237)
                      ...+||.||.|.|+.+..+++.. +..+++.+|+++..++.+++.+...  +  -+.+++++.+|...  +-......||
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~--~l~~~~~~yD  159 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVN--FVNQTSQTFD  159 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTT--TTSCSSCCEE
T ss_pred             CCCeEEEECCCchHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHH--HHhhccccCC
Confidence            35799999999999999998874 4579999999999999999987532  1  13569999999986  3233347899


Q ss_pred             EEEEeCCCh---------hchHHHHHhcccCCCEEEEEeC--C--HHHHHHHHHHHHhcCcccccc
Q 026506          184 SIFLDLPQP---------WLAIPSAKKMLKQDGILCSFSP--C--IEQVQRSCESLRLNFTGKESC  236 (237)
Q Consensus       184 ~v~~~~~~~---------~~~l~~~~~~L~~gG~l~~~~~--~--~~~~~~~~~~l~~~f~~v~~~  236 (237)
                      +|++|..++         .++++.+.+.|+|||+++..+.  .  .+....+.+.+++.|..+..+
T Consensus       160 vIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~F~~v~~~  225 (294)
T 3o4f_A          160 VIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGFY  225 (294)
T ss_dssp             EEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHHHCSEEEEE
T ss_pred             EEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHhhCCceeee
Confidence            999987654         3579999999999999997643  2  245667777777778877653

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=99.31  E-value=5.9e-13  Score=112.69  Aligned_cols=180  Identities=16%  Similarity=0.190  Sum_probs=109.8

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCC-----
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSH-----   87 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----   87 (237)
                      ..|++||||++.+..+        ||.|..|+.|..+.|+.... .|..   ..|+|. |...|....+  .++.     
T Consensus       117 ~~~~vGdrV~~~~~~~--------Cg~C~~C~~g~~~~C~~~~~-~g~~---~~G~~aey~~v~~~~~~--~iP~~~~~~  182 (404)
T 3ip1_A          117 KRFEIGEPVCAEEMLW--------CGHCRPCAEGFPNHCENLNE-LGFN---VDGAFAEYVKVDAKYAW--SLRELEGVY  182 (404)
T ss_dssp             EECCTTCEEEECSEEC--------CSCSHHHHTTCGGGCTTCEE-BTTT---BCCSSBSEEEEEGGGEE--ECGGGBTTB
T ss_pred             CCCCCCCEEEECCccC--------CCCCHHHHCcCcccCccccc-cCCC---CCCCCcceEEechHHeE--ecccccccc
Confidence            5699999999987545        99999999999888864221 1211   234443 3333322111  1111     


Q ss_pred             -------cccccccccHHH-HHH-h-cCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc
Q 026506           88 -------RTQILYIADISF-VIM-Y-LELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT  156 (237)
Q Consensus        88 -------~~~~~~~~~~~~-~~~-~-~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~  156 (237)
                             .+.+..+...+. .+. . .++++|++||.+|+|+ |.+++++++..+ ..+|+++|.+++.++.+++    +
T Consensus       183 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~~----l  257 (404)
T 3ip1_A          183 EGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAG-ASKVILSEPSEVRRNLAKE----L  257 (404)
T ss_dssp             CTHHHHHHHHTHHHHHHHHHHHTTTSCCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHHHHHHHH----H
T ss_pred             ccccchhHHhhhhHHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----c
Confidence                   111111222222 221 2 3688999999999988 888888888863 3589999999999998877    4


Q ss_pred             CCCCcEEEEEccccCCCCCC-CCCCCCCEEEEeCCChhchHHHHHhcc----cCCCEEEEEe
Q 026506          157 GVSSFVTVGVRDIQGQGFPD-EFSGLADSIFLDLPQPWLAIPSAKKML----KQDGILCSFS  213 (237)
Q Consensus       157 ~~~~~i~~~~~d~~~~~~~~-~~~~~~D~v~~~~~~~~~~l~~~~~~L----~~gG~l~~~~  213 (237)
                      |.+..++....|+.+ .+.+ ..+.++|+||...+.+...++.+.+.|    +++|++++++
T Consensus       258 Ga~~vi~~~~~~~~~-~i~~~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G  318 (404)
T 3ip1_A          258 GADHVIDPTKENFVE-AVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVA  318 (404)
T ss_dssp             TCSEEECTTTSCHHH-HHHHHTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred             CCCEEEcCCCCCHHH-HHHHHhCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeC
Confidence            654322211122211 0111 112479998877776644566666666    9999999765

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.31  E-value=1.2e-11  Score=98.36  Aligned_cols=97  Identities=22%  Similarity=0.221  Sum_probs=78.7

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL  187 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~  187 (237)
                      ++.+|||+|||+|.++..++..   ..+++++|+++.+++.++++..     .  .+..+|+.+.+++.   +.||+|++
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~-----~--~~~~~d~~~~~~~~---~~fD~v~~  120 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGV-----K--NVVEAKAEDLPFPS---GAFEAVLA  120 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTC-----S--CEEECCTTSCCSCT---TCEEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcC-----C--CEEECcHHHCCCCC---CCEEEEEE
Confidence            7889999999999999888875   3689999999999999998742     2  16778887644444   78999987


Q ss_pred             eC------CChhchHHHHHhcccCCCEEEEEeCCHH
Q 026506          188 DL------PQPWLAIPSAKKMLKQDGILCSFSPCIE  217 (237)
Q Consensus       188 ~~------~~~~~~l~~~~~~L~~gG~l~~~~~~~~  217 (237)
                      ..      +++..+++++.+.|+|||++++..+...
T Consensus       121 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  156 (260)
T 2avn_A          121 LGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFY  156 (260)
T ss_dssp             CSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBHH
T ss_pred             cchhhhccccHHHHHHHHHHHcCCCeEEEEEeCChH
Confidence            42      4566789999999999999998877653

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.31  E-value=2e-11  Score=92.86  Aligned_cols=103  Identities=18%  Similarity=0.135  Sum_probs=80.9

Q ss_pred             CCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC--CCcEEEEEccccCCC---------
Q 026506          105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV--SSFVTVGVRDIQGQG---------  173 (237)
Q Consensus       105 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~i~~~~~d~~~~~---------  173 (237)
                      .+.+..+|||+||  |+.++.+++.  .+++|+++|.+++..+.|+++++..+.  .++++++.+|+.+..         
T Consensus        27 ~l~~a~~VLEiGt--GySTl~lA~~--~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~  102 (202)
T 3cvo_A           27 AYEEAEVILEYGS--GGSTVVAAEL--PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDA  102 (202)
T ss_dssp             HHHHCSEEEEESC--SHHHHHHHTS--TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSST
T ss_pred             HhhCCCEEEEECc--hHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccch
Confidence            3356789999998  5677667663  258999999999999999999999987  667999999975320         


Q ss_pred             ----CCC-------C-CCCCCCEEEEeCCChhchHHHHHhcccCCCEEEE
Q 026506          174 ----FPD-------E-FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCS  211 (237)
Q Consensus       174 ----~~~-------~-~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~  211 (237)
                          ++.       . ..+.||+||+|.......+..+.+.|+|||+|++
T Consensus       103 ~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~~~~~~~~l~~l~~GG~Iv~  152 (202)
T 3cvo_A          103 KWRSYPDYPLAVWRTEGFRHPDVVLVDGRFRVGCALATAFSITRPVTLLF  152 (202)
T ss_dssp             TGGGTTHHHHGGGGCTTCCCCSEEEECSSSHHHHHHHHHHHCSSCEEEEE
T ss_pred             hhhhHHHHhhhhhccccCCCCCEEEEeCCCchhHHHHHHHhcCCCeEEEE
Confidence                110       0 1267999999998666788889999999999974

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=99.30  E-value=1.1e-12  Score=108.93  Aligned_cols=180  Identities=15%  Similarity=0.154  Sum_probs=110.5

Q ss_pred             CCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCC----
Q 026506           13 TRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSH----   87 (237)
Q Consensus        13 ~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~----   87 (237)
                      ...|++||||++.+..+        ||.|..|+.|..+.|..... .|..  ...|+|. |...|....  ..++.    
T Consensus        79 v~~~~vGdrV~~~~~~~--------cg~C~~C~~g~~~~C~~~~~-~g~~--~~~G~~aey~~v~~~~~--~~iP~~~~~  145 (352)
T 1e3j_A           79 VKHLKKGDRVAVEPGVP--------CRRCQFCKEGKYNLCPDLTF-CATP--PDDGNLARYYVHAADFC--HKLPDNVSL  145 (352)
T ss_dssp             CCSCCTTCEEEECCEEC--------CSSSHHHHTTCGGGCTTCEE-TTBT--TBCCSCBSEEEEEGGGE--EECCTTSCH
T ss_pred             CCCCCCCCEEEEcCcCC--------CCCChhhhCcCcccCCCCcc-cCcC--CCCccceeEEEeChHHe--EECcCCCCH
Confidence            45799999999876444        99999999999888863211 1110  0123333 333322111  11111    


Q ss_pred             -cccccccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE
Q 026506           88 -RTQILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV  164 (237)
Q Consensus        88 -~~~~~~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~  164 (237)
                       .+..+.+...+ ..+...++++|++||.+|+|+ |..+.++++..+  .+|+++|.+++.++.+++    .|.+..++.
T Consensus       146 ~~aa~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~----lGa~~~~~~  219 (352)
T 1e3j_A          146 EEGALLEPLSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKN----CGADVTLVV  219 (352)
T ss_dssp             HHHHTHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH----TTCSEEEEC
T ss_pred             HHHHhhchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH----hCCCEEEcC
Confidence             11122222222 244566889999999999987 888888888863  459999999999998875    565432222


Q ss_pred             EE-ccccCCCCCCCC----CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          165 GV-RDIQGQGFPDEF----SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       165 ~~-~d~~~~~~~~~~----~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .. .+..+ .+....    +.++|+||...+.. ..++.+.+.|+++|+++.++
T Consensus       220 ~~~~~~~~-~i~~~~~~~~g~g~D~vid~~g~~-~~~~~~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          220 DPAKEEES-SIIERIRSAIGDLPNVTIDCSGNE-KCITIGINITRTGGTLMLVG  271 (352)
T ss_dssp             CTTTSCHH-HHHHHHHHHSSSCCSEEEECSCCH-HHHHHHHHHSCTTCEEEECS
T ss_pred             cccccHHH-HHHHHhccccCCCCCEEEECCCCH-HHHHHHHHHHhcCCEEEEEe
Confidence            11 11111 011101    25699988666543 37889999999999999775

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.30  E-value=2.4e-12  Score=103.99  Aligned_cols=127  Identities=16%  Similarity=0.118  Sum_probs=84.8

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-----------------CCC----------
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-----------------GVS----------  159 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------------~~~----------  159 (237)
                      .++.+|||+|||+|.....++..  ...+|+++|+++.+++.|++++...                 +..          
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  147 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSACS--HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL  147 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGG--GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred             CCCCeEEEECCCcChHHHHhhcc--CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHH
Confidence            47889999999999944333322  2469999999999999998865421                 100          


Q ss_pred             --CcEEEEEccccC-CCCCC--CCCCCCCEEEEeCC---------ChhchHHHHHhcccCCCEEEEEeC-----------
Q 026506          160 --SFVTVGVRDIQG-QGFPD--EFSGLADSIFLDLP---------QPWLAIPSAKKMLKQDGILCSFSP-----------  214 (237)
Q Consensus       160 --~~i~~~~~d~~~-~~~~~--~~~~~~D~v~~~~~---------~~~~~l~~~~~~L~~gG~l~~~~~-----------  214 (237)
                        ..+++...|+.+ .+++.  ...+.||+|++...         ++..+++++.++|||||++++...           
T Consensus       148 ~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~  227 (289)
T 2g72_A          148 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEA  227 (289)
T ss_dssp             HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTE
T ss_pred             HhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCe
Confidence              014566778865 33221  11256999987532         345689999999999999987521           


Q ss_pred             ----CHHHHHHHHHHHHh-cCccccc
Q 026506          215 ----CIEQVQRSCESLRL-NFTGKES  235 (237)
Q Consensus       215 ----~~~~~~~~~~~l~~-~f~~v~~  235 (237)
                          .....+++.+.+++ ||..+++
T Consensus       228 ~~~~~~~~~~~l~~~l~~aGf~~~~~  253 (289)
T 2g72_A          228 RLTVVPVSEEEVREALVRSGYKVRDL  253 (289)
T ss_dssp             EEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred             eeeeccCCHHHHHHHHHHcCCeEEEe
Confidence                11135667777877 7876653

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.29  E-value=4.9e-11  Score=101.24  Aligned_cols=109  Identities=23%  Similarity=0.216  Sum_probs=83.8

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..++.+|||+|||+|.++..+++.   ..+|+++|+++.+++.|++++..+++.  +++..+|+.+  +..   ..||+|
T Consensus       288 ~~~~~~VLDlgcG~G~~sl~la~~---~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~--~~~---~~fD~V  357 (425)
T 2jjq_A          288 LVEGEKILDMYSGVGTFGIYLAKR---GFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDRE--VSV---KGFDTV  357 (425)
T ss_dssp             HCCSSEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTT--CCC---TTCSEE
T ss_pred             cCCCCEEEEeeccchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHH--cCc---cCCCEE
Confidence            567889999999999999998875   368999999999999999999988875  8999999975  222   379999


Q ss_pred             EEeCCCh--h-chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHH
Q 026506          186 FLDLPQP--W-LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL  226 (237)
Q Consensus       186 ~~~~~~~--~-~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l  226 (237)
                      ++|+|..  . .+++.+ ..|+|+|.+++.. +...+.+-+..|
T Consensus       358 v~dPPr~g~~~~~~~~l-~~l~p~givyvsc-~p~tlarDl~~l  399 (425)
T 2jjq_A          358 IVDPPRAGLHPRLVKRL-NREKPGVIVYVSC-NPETFARDVKML  399 (425)
T ss_dssp             EECCCTTCSCHHHHHHH-HHHCCSEEEEEES-CHHHHHHHHHHS
T ss_pred             EEcCCccchHHHHHHHH-HhcCCCcEEEEEC-ChHHHHhHHhhC
Confidence            9998843  2 244444 4689999888543 444444444443

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.29  E-value=3.6e-12  Score=98.83  Aligned_cols=90  Identities=23%  Similarity=0.204  Sum_probs=72.3

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL  187 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~  187 (237)
                      ++.+|||+|||+|.++..++..       +++|+++.+++.++++       + +++...|+.+..++.   +.||+|++
T Consensus        47 ~~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~-------~-~~~~~~d~~~~~~~~---~~fD~v~~  108 (219)
T 1vlm_A           47 PEGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR-------G-VFVLKGTAENLPLKD---ESFDFALM  108 (219)
T ss_dssp             CSSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT-------T-CEEEECBTTBCCSCT---TCEEEEEE
T ss_pred             CCCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc-------C-CEEEEcccccCCCCC---CCeeEEEE
Confidence            3789999999999988665421       9999999999999885       2 778888987644443   68999987


Q ss_pred             e-----CCChhchHHHHHhcccCCCEEEEEeCC
Q 026506          188 D-----LPQPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       188 ~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      .     .+++..+++++.+.|+|||.+++..+.
T Consensus       109 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  141 (219)
T 1vlm_A          109 VTTICFVDDPERALKEAYRILKKGGYLIVGIVD  141 (219)
T ss_dssp             ESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cchHhhccCHHHHHHHHHHHcCCCcEEEEEEeC
Confidence            5     346677999999999999999977543

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=99.29  E-value=4.5e-13  Score=111.24  Aligned_cols=181  Identities=18%  Similarity=0.169  Sum_probs=99.0

Q ss_pred             cCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCC---
Q 026506           12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSH---   87 (237)
Q Consensus        12 ~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~---   87 (237)
                      ....|++||||.+....+        ||.|..|+.|..+.|+.... +|.   ...|+|. |...|....  ..++.   
T Consensus        79 ~v~~~~vGdrV~~~~~~~--------cg~C~~C~~g~~~~C~~~~~-~g~---~~~G~~aey~~v~~~~~--~~iP~~~~  144 (348)
T 2d8a_A           79 GVEGIEVGDYVSVETHIV--------CGKCYACRRGQYHVCQNTKI-FGV---DTDGVFAEYAVVPAQNI--WKNPKSIP  144 (348)
T ss_dssp             TCCSCCTTCEEEECCEEC--------CSCCC------------CEE-TTT---SSCCSSBSEEEEEGGGE--EECCTTSC
T ss_pred             CCCcCCCCCEEEEcCCCC--------CCCChhhhCcCcccCCCCCe-ecC---CCCCcCcceEEeChHHe--EECCCCCC
Confidence            346799999999976444        99999999999888863211 121   1123333 333332111  11111   


Q ss_pred             --cccccccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 026506           88 --RTQILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT  163 (237)
Q Consensus        88 --~~~~~~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~  163 (237)
                        .+..+.+...+ ..+...++ +|++||.+|+|. |..+.++++..+ ..+|++++.+++.++.+++    .|.+..++
T Consensus       145 ~~~aa~~~~~~ta~~~l~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~G-a~~Vi~~~~~~~~~~~~~~----~Ga~~~~~  218 (348)
T 2d8a_A          145 PEYATLQEPLGNAVDTVLAGPI-SGKSVLITGAGPLGLLGIAVAKASG-AYPVIVSEPSDFRRELAKK----VGADYVIN  218 (348)
T ss_dssp             HHHHTTHHHHHHHHHHHTTSCC-TTCCEEEECCSHHHHHHHHHHHHTT-CCSEEEECSCHHHHHHHHH----HTCSEEEC
T ss_pred             HHHHHhhhHHHHHHHHHHhcCC-CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----hCCCEEEC
Confidence              11222222222 23455677 999999999987 788888888763 2389999999999888875    45432111


Q ss_pred             EEEccccCCCCCCC-CCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          164 VGVRDIQGQGFPDE-FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       164 ~~~~d~~~~~~~~~-~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ....|+.+ .+... .+.++|+||...+.+ ..++.+.+.|+++|+++.++.
T Consensus       219 ~~~~~~~~-~v~~~~~g~g~D~vid~~g~~-~~~~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          219 PFEEDVVK-EVMDITDGNGVDVFLEFSGAP-KALEQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             TTTSCHHH-HHHHHTTTSCEEEEEECSCCH-HHHHHHHHHEEEEEEEEECCC
T ss_pred             CCCcCHHH-HHHHHcCCCCCCEEEECCCCH-HHHHHHHHHHhcCCEEEEEcc
Confidence            11111110 01000 113699988666543 378999999999999987753

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=99.28  E-value=4.7e-12  Score=106.08  Aligned_cols=184  Identities=13%  Similarity=0.073  Sum_probs=111.2

Q ss_pred             CCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCC-------CC--------ceEEe--ccCcEE-EEE
Q 026506           13 TRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKP-------FG--------SMVFS--NKGGFV-YLL   74 (237)
Q Consensus        13 ~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~g--------~~~~~--~~~~~~-~~~   74 (237)
                      ...|++||||++....+        ||.|..|+.|..+.|......       .|        .....  ..|+|. |..
T Consensus        81 V~~~~vGdrV~~~~~~~--------Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~  152 (374)
T 1cdo_A           81 VTEFQPGEKVIPLFISQ--------CGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTV  152 (374)
T ss_dssp             CCSCCTTCEEEECSSCC--------CSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEE
T ss_pred             CccCCCCCEEEeCCCCC--------CCCChhhcCCCcCcCCCcccccccccccCCccccccCCcccccccCCccceeEEE
Confidence            46799999999977666        999999999998888632110       01        00000  124444 333


Q ss_pred             CCCHHHHhhhcCCc-----ccccc-cccHHH--HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHH
Q 026506           75 APTPELWTLVLSHR-----TQILY-IADISF--VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQR  145 (237)
Q Consensus        75 ~~~~~~~~~~~~~~-----~~~~~-~~~~~~--~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~  145 (237)
                      .|....  ..++..     +..+. +...+.  +....++++|++||.+|+|+ |.++.++++..+ ..+|+++|.+++.
T Consensus       153 v~~~~~--~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~  229 (374)
T 1cdo_A          153 VNQIAV--AKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDK  229 (374)
T ss_dssp             EEGGGE--EECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGG
T ss_pred             Echhhe--EECCCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHH
Confidence            332211  111211     11111 111121  22456789999999999988 888888888863 3489999999999


Q ss_pred             HHHHHHHHHHcCCCCcEEEEE--ccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCC-CEEEEEe
Q 026506          146 AASAREDFERTGVSSFVTVGV--RDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFS  213 (237)
Q Consensus       146 ~~~a~~~~~~~~~~~~i~~~~--~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~  213 (237)
                      ++.+++    .|.+..++...  .++.+ .+.....+++|+||...... ..++.+.+.|+++ |+++.++
T Consensus       230 ~~~~~~----lGa~~vi~~~~~~~~~~~-~~~~~~~~g~D~vid~~g~~-~~~~~~~~~l~~~~G~iv~~G  294 (374)
T 1cdo_A          230 FEKAKV----FGATDFVNPNDHSEPISQ-VLSKMTNGGVDFSLECVGNV-GVMRNALESCLKGWGVSVLVG  294 (374)
T ss_dssp             HHHHHH----TTCCEEECGGGCSSCHHH-HHHHHHTSCBSEEEECSCCH-HHHHHHHHTBCTTTCEEEECS
T ss_pred             HHHHHH----hCCceEEeccccchhHHH-HHHHHhCCCCCEEEECCCCH-HHHHHHHHHhhcCCcEEEEEc
Confidence            998875    56543121110  01110 01111114799988666543 3789999999999 9998764

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.28  E-value=1.3e-11  Score=97.23  Aligned_cols=105  Identities=14%  Similarity=0.116  Sum_probs=80.1

Q ss_pred             CCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC--CCCCC
Q 026506          105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE--FSGLA  182 (237)
Q Consensus       105 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~--~~~~~  182 (237)
                      .+.++.+|||+|||+|.++..++...   .+|+++|+++.+++.++++.   .. .++++..+|+.+......  ....|
T Consensus        53 ~~~~~~~vLD~GcG~G~~~~~la~~~---~~v~gvD~s~~~~~~a~~~~---~~-~~~~~~~~d~~~~~~~~~~~~~~~~  125 (245)
T 3ggd_A           53 LFNPELPLIDFACGNGTQTKFLSQFF---PRVIGLDVSKSALEIAAKEN---TA-ANISYRLLDGLVPEQAAQIHSEIGD  125 (245)
T ss_dssp             TSCTTSCEEEETCTTSHHHHHHHHHS---SCEEEEESCHHHHHHHHHHS---CC-TTEEEEECCTTCHHHHHHHHHHHCS
T ss_pred             ccCCCCeEEEEcCCCCHHHHHHHHhC---CCEEEEECCHHHHHHHHHhC---cc-cCceEEECcccccccccccccccCc
Confidence            35788899999999999999999874   38999999999999999875   22 249999999875222110  00248


Q ss_pred             CEEEEeC-----C--ChhchHHHHHhcccCCCEEEEEeCCH
Q 026506          183 DSIFLDL-----P--QPWLAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       183 D~v~~~~-----~--~~~~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                      |+|+.+.     +  +...+++++.+.|||||++++.....
T Consensus       126 d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  166 (245)
T 3ggd_A          126 ANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGT  166 (245)
T ss_dssp             CEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred             cEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            9998753     2  33578999999999999988776544

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=99.28  E-value=1.2e-12  Score=108.44  Aligned_cols=186  Identities=15%  Similarity=0.120  Sum_probs=115.6

Q ss_pred             ccCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHh--hhcC-
Q 026506           11 SFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWT--LVLS-   86 (237)
Q Consensus        11 ~~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~--~~~~-   86 (237)
                      +-...+++||||.+.....        |+.|..|..|..+.|..... .|.   ...|+|. |...|....+.  ..++ 
T Consensus        70 ~~V~~~~~GdrV~~~~~~~--------~g~c~~c~~g~~~~c~~~~~-~g~---~~~G~~aey~~v~~~~~~~iP~~l~~  137 (346)
T 4a2c_A           70 SGVDDLHPGDAVACVPLLP--------CFTCPECLKGFYSQCAKYDF-IGS---RRDGGFAEYIVVKRKNVFALPTDMPI  137 (346)
T ss_dssp             TTCCSCCTTCEEEECCEEC--------CSCSHHHHTTCGGGCSSCEE-BTT---TBCCSSBSEEEEEGGGEEECCTTSCG
T ss_pred             CCcccccCCCeEEeeeccC--------CCCcccccCCccccCCCccc-ccC---CCCcccccccccchheEEECCCCCCH
Confidence            3457899999999977444        99999999998888763211 111   1234443 33333221111  0111 


Q ss_pred             CcccccccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE
Q 026506           87 HRTQILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV  164 (237)
Q Consensus        87 ~~~~~~~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~  164 (237)
                      ..+..+.+.... .........+|++||..|+|+ |.++.++++.++ ...++++|.+++.++.+++    +|.+..++.
T Consensus       138 ~~aa~l~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G-~~~vi~~~~~~~k~~~a~~----lGa~~~i~~  212 (346)
T 4a2c_A          138 EDGAFIEPITVGLHAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDISSEKLALAKS----FGAMQTFNS  212 (346)
T ss_dssp             GGGGGHHHHHHHHHHHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTCSEEEET
T ss_pred             HHHHhchHHHHHHHHHHHhccCCCCEEEEECCCCcchHHHHHHHHcC-CcEEEEEechHHHHHHHHH----cCCeEEEeC
Confidence            122233332222 245667789999999999998 777888888864 4678999999999998887    576543333


Q ss_pred             EEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          165 GVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       165 ~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ...|..+..........+|+|+.....+ ..++.+.+.|++||++++++.
T Consensus       213 ~~~~~~~~~~~~~~~~g~d~v~d~~G~~-~~~~~~~~~l~~~G~~v~~g~  261 (346)
T 4a2c_A          213 SEMSAPQMQSVLRELRFNQLILETAGVP-QTVELAVEIAGPHAQLALVGT  261 (346)
T ss_dssp             TTSCHHHHHHHHGGGCSSEEEEECSCSH-HHHHHHHHHCCTTCEEEECCC
T ss_pred             CCCCHHHHHHhhcccCCccccccccccc-chhhhhhheecCCeEEEEEec
Confidence            2222221000001125688876555444 488999999999999997753

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=99.28  E-value=4.6e-12  Score=105.11  Aligned_cols=177  Identities=18%  Similarity=0.169  Sum_probs=110.3

Q ss_pred             cCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCce-----EEeccCcEE-EEECCCHHHHhhhc
Q 026506           12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSM-----VFSNKGGFV-YLLAPTPELWTLVL   85 (237)
Q Consensus        12 ~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~-----~~~~~~~~~-~~~~~~~~~~~~~~   85 (237)
                      -...|++||||++...       ...||.|..|+.|..+.|......++..     .....|++. |...|....  ...
T Consensus        76 ~v~~~~vGdrV~~~~~-------~~~Cg~C~~C~~g~~~~c~~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~--~~i  146 (348)
T 3two_A           76 GVKKFKIGDVVGVGCF-------VNSCKACKPCKEHQEQFCTKVVFTYDCLDSFHDNEPHMGGYSNNIVVDENYV--ISV  146 (348)
T ss_dssp             TCCSCCTTCEEEECSE-------EECCSCSHHHHTTCGGGCTTCEESSSSEEGGGTTEECCCSSBSEEEEEGGGC--EEC
T ss_pred             CCCCCCCCCEEEEeCC-------cCCCCCChhHhCCCcccCcccccccccccccccCCcCCccccceEEechhhE--EEC
Confidence            3467999999988431       1239999999999988886211111110     001124444 333332211  111


Q ss_pred             CCc-----ccccc-cccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q 026506           86 SHR-----TQILY-IADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG  157 (237)
Q Consensus        86 ~~~-----~~~~~-~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~  157 (237)
                      +..     +..+. ....+ ..+...++++|++||.+|+|+ |.++.++++..+  .+|++++.+++.++.+++    +|
T Consensus       147 P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~----lG  220 (348)
T 3two_A          147 DKNAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMG--AEVSVFARNEHKKQDALS----MG  220 (348)
T ss_dssp             CTTSCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSSTTHHHHHH----TT
T ss_pred             CCCCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHh----cC
Confidence            111     11111 11111 245566889999999999988 888888888863  489999999999998876    57


Q ss_pred             CCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          158 VSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       158 ~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .+..+    .+..  .+.    .++|+||...+.. ..++.+.+.|+++|+++.++.
T Consensus       221 a~~v~----~~~~--~~~----~~~D~vid~~g~~-~~~~~~~~~l~~~G~iv~~G~  266 (348)
T 3two_A          221 VKHFY----TDPK--QCK----EELDFIISTIPTH-YDLKDYLKLLTYNGDLALVGL  266 (348)
T ss_dssp             CSEEE----SSGG--GCC----SCEEEEEECCCSC-CCHHHHHTTEEEEEEEEECCC
T ss_pred             CCeec----CCHH--HHh----cCCCEEEECCCcH-HHHHHHHHHHhcCCEEEEECC
Confidence            55412    2321  122    3799987655543 378999999999999998754

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=99.27  E-value=6.7e-12  Score=105.12  Aligned_cols=184  Identities=14%  Similarity=0.140  Sum_probs=111.1

Q ss_pred             CCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCC--Cc-------------eEEe--ccCcEE-EEE
Q 026506           13 TRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPF--GS-------------MVFS--NKGGFV-YLL   74 (237)
Q Consensus        13 ~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--g~-------------~~~~--~~~~~~-~~~   74 (237)
                      ...|++||||++....+        ||.|..|+.|..+.|.......  |.             ....  ..|+|. |..
T Consensus        80 v~~~~vGdrV~~~~~~~--------Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~  151 (374)
T 2jhf_A           80 VTTVRPGDKVIPLFTPQ--------CGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTV  151 (374)
T ss_dssp             CCSCCTTCEEEECSSCC--------CSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEE
T ss_pred             CCCCCCCCEEEECCCCC--------CCCCccccCCCcCcCCCCccccccccccCCcccccccccccccccCCccCeeEEE
Confidence            46799999999977666        9999999999988886421100  10             0000  124444 333


Q ss_pred             CCCHHHHhhhcCC-----cccccc-cccHHH--HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHH
Q 026506           75 APTPELWTLVLSH-----RTQILY-IADISF--VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQR  145 (237)
Q Consensus        75 ~~~~~~~~~~~~~-----~~~~~~-~~~~~~--~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~  145 (237)
                      .|....  ..++.     .+..+. +...+.  +....++++|++||.+|+|+ |.+++++++..+ ..+|+++|.+++.
T Consensus       152 v~~~~~--~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~  228 (374)
T 2jhf_A          152 VDEISV--AKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDK  228 (374)
T ss_dssp             EEGGGE--EECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGG
T ss_pred             EchHHe--EECCCCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHH
Confidence            332211  11111     111111 111121  22456789999999999988 888888888863 3489999999999


Q ss_pred             HHHHHHHHHHcCCCCcEEEEE--ccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCC-CEEEEEe
Q 026506          146 AASAREDFERTGVSSFVTVGV--RDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFS  213 (237)
Q Consensus       146 ~~~a~~~~~~~~~~~~i~~~~--~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~  213 (237)
                      ++.+++    .|.+..++...  .|+.+ .+.....+++|+||...+.. ..++.+.+.|+++ |+++.++
T Consensus       229 ~~~~~~----lGa~~vi~~~~~~~~~~~-~~~~~~~~g~D~vid~~g~~-~~~~~~~~~l~~~~G~iv~~G  293 (374)
T 2jhf_A          229 FAKAKE----VGATECVNPQDYKKPIQE-VLTEMSNGGVDFSFEVIGRL-DTMVTALSCCQEAYGVSVIVG  293 (374)
T ss_dssp             HHHHHH----TTCSEEECGGGCSSCHHH-HHHHHTTSCBSEEEECSCCH-HHHHHHHHHBCTTTCEEEECS
T ss_pred             HHHHHH----hCCceEecccccchhHHH-HHHHHhCCCCcEEEECCCCH-HHHHHHHHHhhcCCcEEEEec
Confidence            998875    56543221110  11110 01111124799987666543 3789999999999 9998765

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.27  E-value=7.6e-11  Score=94.56  Aligned_cols=102  Identities=15%  Similarity=0.097  Sum_probs=77.8

Q ss_pred             CCCCEEEEEccCc---cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC----------
Q 026506          107 VPGCLVLESGTGS---GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG----------  173 (237)
Q Consensus       107 ~~~~~vldiG~G~---G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------  173 (237)
                      .+..+|||+|||+   |.++..+++. .+..+|+++|+++.+++.|++++..   ..++++..+|+.+..          
T Consensus        76 ~~~~~vLDlGcG~pt~G~~~~~~~~~-~p~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~~D~~~~~~~~~~~~~~~  151 (274)
T 2qe6_A           76 AGISQFLDLGSGLPTVQNTHEVAQSV-NPDARVVYVDIDPMVLTHGRALLAK---DPNTAVFTADVRDPEYILNHPDVRR  151 (274)
T ss_dssp             TCCCEEEEETCCSCCSSCHHHHHHHH-CTTCEEEEEESSHHHHHHHHHHHTT---CTTEEEEECCTTCHHHHHHSHHHHH
T ss_pred             cCCCEEEEECCCCCCCChHHHHHHHh-CCCCEEEEEECChHHHHHHHHhcCC---CCCeEEEEeeCCCchhhhccchhhc
Confidence            3457999999999   9877555554 4568999999999999999998743   234999999987421          


Q ss_pred             -CCCCCCCCCCEEEEe-----CCC--hhchHHHHHhcccCCCEEEEEeCC
Q 026506          174 -FPDEFSGLADSIFLD-----LPQ--PWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       174 -~~~~~~~~~D~v~~~-----~~~--~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                       ++.   .+||+|++.     .++  ...+++++.+.|+|||+|++....
T Consensus       152 ~~d~---~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~  198 (274)
T 2qe6_A          152 MIDF---SRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLV  198 (274)
T ss_dssp             HCCT---TSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred             cCCC---CCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEec
Confidence             222   469998864     233  567899999999999999877543

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.27  E-value=6.2e-11  Score=95.70  Aligned_cols=89  Identities=20%  Similarity=0.206  Sum_probs=74.3

Q ss_pred             cHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCC
Q 026506           96 DISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP  175 (237)
Q Consensus        96 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  175 (237)
                      .+..+++.+.+.++++|||+|||+|.++..++..   ..+|+++|+++.+++.+++++..  ..+ +++..+|+.+..++
T Consensus        38 i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~~li~~a~~~~~~--~~~-v~vi~gD~l~~~~~  111 (295)
T 3gru_A           38 FVNKAVESANLTKDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDKSLEPYANKLKEL--YNN-IEIIWGDALKVDLN  111 (295)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCGGGHHHHHHHHHH--CSS-EEEEESCTTTSCGG
T ss_pred             HHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhcc--CCC-eEEEECchhhCCcc
Confidence            3445788888899999999999999999999987   37899999999999999998863  334 99999999875555


Q ss_pred             CCCCCCCCEEEEeCCChh
Q 026506          176 DEFSGLADSIFLDLPQPW  193 (237)
Q Consensus       176 ~~~~~~~D~v~~~~~~~~  193 (237)
                      .   ..||+|+.+.|-.+
T Consensus       112 ~---~~fD~Iv~NlPy~i  126 (295)
T 3gru_A          112 K---LDFNKVVANLPYQI  126 (295)
T ss_dssp             G---SCCSEEEEECCGGG
T ss_pred             c---CCccEEEEeCcccc
Confidence            4   57999999987543

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=99.27  E-value=2.4e-12  Score=106.69  Aligned_cols=183  Identities=19%  Similarity=0.222  Sum_probs=112.9

Q ss_pred             cCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccc-cccC---CCCceEEeccCcEE-EEECCCHHHHhhhcC
Q 026506           12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSD-WIGK---PFGSMVFSNKGGFV-YLLAPTPELWTLVLS   86 (237)
Q Consensus        12 ~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~---~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~   86 (237)
                      -...|++||||.+.+..+        ||.|..|+.|..+.|. ....   ..|.   ...|++. |...|..+. ....+
T Consensus        74 ~v~~~~vGdrV~~~~~~~--------cg~C~~c~~g~~~~c~~~~~~~~~~~g~---~~~G~~aey~~v~~~~~-~~~~p  141 (345)
T 3jv7_A           74 GVTGFGVGDAVAVYGPWG--------CGACHACARGRENYCTRAADLGITPPGL---GSPGSMAEYMIVDSARH-LVPIG  141 (345)
T ss_dssp             TCCSCCTTCEEEECCSCC--------CSSSHHHHTTCGGGCSSHHHHTCCCBTT---TBCCSSBSEEEESCGGG-EEECT
T ss_pred             CCCCCCCCCEEEEecCCC--------CCCChHHHCcCcCcCccccccccccCCc---CCCceeeEEEEecchhc-eEeCC
Confidence            346799999999988666        9999999999988882 1100   0111   1123333 333331110 00111


Q ss_pred             C----c-ccccccccHH-HHHHhc--CCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q 026506           87 H----R-TQILYIADIS-FVIMYL--ELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG  157 (237)
Q Consensus        87 ~----~-~~~~~~~~~~-~~~~~~--~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~  157 (237)
                      .    . +.+..+...+ ..+...  .+++|++||.+|+|+ |..+.++++..+ ..+|+++|.+++.++.+++    .|
T Consensus       142 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g-~~~Vi~~~~~~~~~~~~~~----lG  216 (345)
T 3jv7_A          142 DLDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVS-AARVIAVDLDDDRLALARE----VG  216 (345)
T ss_dssp             TCCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESCHHHHHHHHH----TT
T ss_pred             CCCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cC
Confidence            1    1 1112222222 244443  688999999999988 888899998874 3789999999999998876    57


Q ss_pred             CCCcEEEEEccccCCCCCCC-CCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          158 VSSFVTVGVRDIQGQGFPDE-FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       158 ~~~~i~~~~~d~~~~~~~~~-~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .+..++. ..|..+ .+... .+.++|+||...+.+ ..++.+.+.|+++|++++++.
T Consensus       217 a~~~i~~-~~~~~~-~v~~~t~g~g~d~v~d~~G~~-~~~~~~~~~l~~~G~iv~~G~  271 (345)
T 3jv7_A          217 ADAAVKS-GAGAAD-AIRELTGGQGATAVFDFVGAQ-STIDTAQQVVAVDGHISVVGI  271 (345)
T ss_dssp             CSEEEEC-STTHHH-HHHHHHGGGCEEEEEESSCCH-HHHHHHHHHEEEEEEEEECSC
T ss_pred             CCEEEcC-CCcHHH-HHHHHhCCCCCeEEEECCCCH-HHHHHHHHHHhcCCEEEEECC
Confidence            6542222 112111 01111 113799977666554 378999999999999997753

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=99.26  E-value=7.5e-12  Score=104.78  Aligned_cols=184  Identities=16%  Similarity=0.161  Sum_probs=111.1

Q ss_pred             CCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccc------cCC-C--------CceEEe--ccCcEE-EEE
Q 026506           13 TRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWI------GKP-F--------GSMVFS--NKGGFV-YLL   74 (237)
Q Consensus        13 ~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------~~~-~--------g~~~~~--~~~~~~-~~~   74 (237)
                      ...|++||||++....+        ||.|..|+.|..+.|...      |.. .        |..+..  ..|+|. |..
T Consensus        79 V~~~~vGdrV~~~~~~~--------Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~  150 (373)
T 2fzw_A           79 VTKLKAGDTVIPLYIPQ--------CGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTV  150 (373)
T ss_dssp             CCSCCTTCEEEECSSCC--------CSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEEE
T ss_pred             CCCCCCCCEEEECCCCC--------CCCChHHcCcCcccCCCcccccccccccCCcccccccccccccccCCccceeEEE
Confidence            46799999999977666        999999999998888632      110 0        000000  124443 333


Q ss_pred             CCCHHHHhhhcCC-----cccccc-cccHHH--HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHH
Q 026506           75 APTPELWTLVLSH-----RTQILY-IADISF--VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQR  145 (237)
Q Consensus        75 ~~~~~~~~~~~~~-----~~~~~~-~~~~~~--~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~  145 (237)
                      .|....  ..++.     .+..+. +...+.  +....++++|++||.+|+|+ |.++.++++..+ ..+|+++|.+++.
T Consensus       151 v~~~~~--~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~G-a~~Vi~~~~~~~~  227 (373)
T 2fzw_A          151 VADISV--AKIDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDK  227 (373)
T ss_dssp             EEGGGE--EECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGG
T ss_pred             Echhhe--EECCCCCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHH
Confidence            332111  11111     111111 111121  22456789999999999988 888888988874 3489999999999


Q ss_pred             HHHHHHHHHHcCCCCcEEEEE--ccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCC-CEEEEEe
Q 026506          146 AASAREDFERTGVSSFVTVGV--RDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFS  213 (237)
Q Consensus       146 ~~~a~~~~~~~~~~~~i~~~~--~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~  213 (237)
                      ++.+++    .|.+..++...  .|+.+ .+.....+++|+||...... ..++.+.+.|+++ |+++.++
T Consensus       228 ~~~~~~----lGa~~vi~~~~~~~~~~~-~v~~~~~~g~D~vid~~g~~-~~~~~~~~~l~~~~G~iv~~G  292 (373)
T 2fzw_A          228 FARAKE----FGATECINPQDFSKPIQE-VLIEMTDGGVDYSFECIGNV-KVMRAALEACHKGWGVSVVVG  292 (373)
T ss_dssp             HHHHHH----HTCSEEECGGGCSSCHHH-HHHHHTTSCBSEEEECSCCH-HHHHHHHHTBCTTTCEEEECS
T ss_pred             HHHHHH----cCCceEeccccccccHHH-HHHHHhCCCCCEEEECCCcH-HHHHHHHHhhccCCcEEEEEe
Confidence            998876    46543121110  01110 01111124799987666543 3789999999999 9998765

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.26  E-value=2.2e-12  Score=109.51  Aligned_cols=109  Identities=18%  Similarity=0.236  Sum_probs=79.9

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE-EEEccccCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT-VGVRDIQGQGFPDE  177 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~-~~~~d~~~~~~~~~  177 (237)
                      .++..+...++.+|||+|||+|.++..+++.   ..+++++|+++.+++.|+++    +...... +...+.....++. 
T Consensus        98 ~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~~-  169 (416)
T 4e2x_A           98 DFLATELTGPDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRTE-  169 (416)
T ss_dssp             HHHHTTTCSSSCEEEEETCTTTTTHHHHHHT---TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHHH-
T ss_pred             HHHHHhCCCCCCEEEEecCCCCHHHHHHHHc---CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccCC-
Confidence            3566677788999999999999999888875   35899999999999999875    3322111 1111221111222 


Q ss_pred             CCCCCCEEEEe-----CCChhchHHHHHhcccCCCEEEEEeCCHH
Q 026506          178 FSGLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSPCIE  217 (237)
Q Consensus       178 ~~~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  217 (237)
                        +.||+|++.     .+++..+++++.+.|||||++++..+...
T Consensus       170 --~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~  212 (416)
T 4e2x_A          170 --GPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLG  212 (416)
T ss_dssp             --CCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred             --CCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChH
Confidence              689999864     45777899999999999999998877653

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.26  E-value=1.4e-11  Score=105.57  Aligned_cols=123  Identities=15%  Similarity=0.087  Sum_probs=95.4

Q ss_pred             cccccccHH-HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhC------------CCcEEEEEeCCHHHHHHHHHHHHHc
Q 026506           90 QILYIADIS-FVIMYLELVPGCLVLESGTGSGSLTTSLARAVA------------PTGHVYTFDFHEQRAASAREDFERT  156 (237)
Q Consensus        90 ~~~~~~~~~-~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~------------~~~~v~~vD~~~~~~~~a~~~~~~~  156 (237)
                      +...|..+. .++..+.+.++.+|+|.|||+|.++..+++.+.            ...+++|+|+++.+++.|+.++..+
T Consensus       152 ~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~  231 (445)
T 2okc_A          152 QYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLH  231 (445)
T ss_dssp             GGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHT
T ss_pred             cccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHh
Confidence            334455544 467778888899999999999999988887641            1257999999999999999999888


Q ss_pred             CCCC-cEEEEEccccCCCCCCCCCCCCCEEEEeCCCh----------------------hchHHHHHhcccCCCEEEEEe
Q 026506          157 GVSS-FVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP----------------------WLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       157 ~~~~-~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~----------------------~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ++.. ..++..+|.......    ..||+|+.|+|-.                      ..+++.+.+.|+|||+++++.
T Consensus       232 g~~~~~~~i~~gD~l~~~~~----~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~  307 (445)
T 2okc_A          232 GIGTDRSPIVCEDSLEKEPS----TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL  307 (445)
T ss_dssp             TCCSSCCSEEECCTTTSCCS----SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCcCCCCEeeCCCCCCccc----CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEE
Confidence            8752 377889998753222    4799999987611                      146899999999999999888


Q ss_pred             CCH
Q 026506          214 PCI  216 (237)
Q Consensus       214 ~~~  216 (237)
                      |..
T Consensus       308 p~~  310 (445)
T 2okc_A          308 PDN  310 (445)
T ss_dssp             EHH
T ss_pred             CCc
Confidence            743

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=99.25  E-value=1.9e-12  Score=107.08  Aligned_cols=179  Identities=22%  Similarity=0.198  Sum_probs=111.6

Q ss_pred             cCCCCCCCCEEEEE-EcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc-
Q 026506           12 FTRCIKEGDLVIVY-ERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR-   88 (237)
Q Consensus        12 ~~~~~~~Gd~V~i~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-   88 (237)
                      -...|++||||.+. ...+        ||.|..|+.|..+.|..... .|..   ..|++. |...|....+  ..+.. 
T Consensus        75 ~v~~~~vGdrV~~~~~~~~--------cg~C~~c~~g~~~~c~~~~~-~g~~---~~G~~aey~~v~~~~~~--~iP~~~  140 (340)
T 3s2e_A           75 GVSRVKEGDRVGVPWLYSA--------CGYCEHCLQGWETLCEKQQN-TGYS---VNGGYGEYVVADPNYVG--LLPDKV  140 (340)
T ss_dssp             SCCSCCTTCEEEEESEEEC--------CSSSHHHHTTCGGGCTTCEE-BTTT---BCCSSBSEEEECTTTSE--ECCTTS
T ss_pred             CCCcCCCCCEEEecCCCCC--------CCCChHHhCcCcccCccccc-cCCC---CCCcceeEEEechHHEE--ECCCCC
Confidence            34679999999653 3333        99999999999888864221 1211   234444 4444432211  11111 


Q ss_pred             ----cc-ccccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 026506           89 ----TQ-ILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSF  161 (237)
Q Consensus        89 ----~~-~~~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~  161 (237)
                          +. +......+ ..+...++++|++||..|+|+ |..+.++++..+  .+|+++|.+++.++.+++    .|.+..
T Consensus       141 ~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~----lGa~~~  214 (340)
T 3s2e_A          141 GFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYARAMG--LRVAAVDIDDAKLNLARR----LGAEVA  214 (340)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH----TTCSEE
T ss_pred             CHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH----cCCCEE
Confidence                11 11111111 245666889999999999988 888899998863  489999999999998876    565432


Q ss_pred             EEEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          162 VTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       162 i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ++....|+.+ .+.. ..+++|+|+.+.... ..++.+.+.|+++|+++.++
T Consensus       215 i~~~~~~~~~-~~~~-~~g~~d~vid~~g~~-~~~~~~~~~l~~~G~iv~~G  263 (340)
T 3s2e_A          215 VNARDTDPAA-WLQK-EIGGAHGVLVTAVSP-KAFSQAIGMVRRGGTIALNG  263 (340)
T ss_dssp             EETTTSCHHH-HHHH-HHSSEEEEEESSCCH-HHHHHHHHHEEEEEEEEECS
T ss_pred             EeCCCcCHHH-HHHH-hCCCCCEEEEeCCCH-HHHHHHHHHhccCCEEEEeC
Confidence            2221112211 0111 114789987665544 48899999999999998764

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.25  E-value=3e-11  Score=97.08  Aligned_cols=106  Identities=15%  Similarity=0.233  Sum_probs=72.5

Q ss_pred             HHHhcCCC-CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          100 VIMYLELV-PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       100 ~~~~~~~~-~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      ++..+.+. ++.+|||+|||+|.++..+++.  +..+|+++|+++.+++.+.++    . .........|+.........
T Consensus        76 ~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~--ga~~V~aVDvs~~mL~~a~r~----~-~rv~~~~~~ni~~l~~~~l~  148 (291)
T 3hp7_A           76 ALAVFNLSVEDMITIDIGASTGGFTDVMLQN--GAKLVYAVDVGTNQLVWKLRQ----D-DRVRSMEQYNFRYAEPVDFT  148 (291)
T ss_dssp             HHHHTTCCCTTCEEEEETCTTSHHHHHHHHT--TCSEEEEECSSSSCSCHHHHT----C-TTEEEECSCCGGGCCGGGCT
T ss_pred             HHHhcCCCccccEEEecCCCccHHHHHHHhC--CCCEEEEEECCHHHHHHHHHh----C-cccceecccCceecchhhCC
Confidence            55555554 5779999999999999888776  457999999999999885442    1 12122223344321111101


Q ss_pred             CCCCCEEEEeCC--ChhchHHHHHhcccCCCEEEEE
Q 026506          179 SGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       179 ~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                      ...||+|++|..  ....++.++.++|+|||+++++
T Consensus       149 ~~~fD~v~~d~sf~sl~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          149 EGLPSFASIDVSFISLNLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             TCCCSEEEECCSSSCGGGTHHHHHHHSCTTCEEEEE
T ss_pred             CCCCCEEEEEeeHhhHHHHHHHHHHHcCcCCEEEEE
Confidence            134999988654  3356899999999999999876

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.25  E-value=3.1e-11  Score=97.99  Aligned_cols=88  Identities=20%  Similarity=0.219  Sum_probs=69.2

Q ss_pred             HHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC
Q 026506           97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD  176 (237)
Q Consensus        97 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  176 (237)
                      ...++..+.+.++.+|||+|||+|.++..++..   ..+|+++|+++.+++.+++++...+..+ +++..+|+.+.  +.
T Consensus        31 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~~~~~~-v~~~~~D~~~~--~~  104 (299)
T 2h1r_A           31 LDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLYEGYNN-LEVYEGDAIKT--VF  104 (299)
T ss_dssp             HHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHHTTCCC-EEC----CCSS--CC
T ss_pred             HHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEECchhhC--Cc
Confidence            344777788889999999999999999988875   3689999999999999999988777655 99999999753  32


Q ss_pred             CCCCCCCEEEEeCCChh
Q 026506          177 EFSGLADSIFLDLPQPW  193 (237)
Q Consensus       177 ~~~~~~D~v~~~~~~~~  193 (237)
                         ..||+|+.|+|-.+
T Consensus       105 ---~~~D~Vv~n~py~~  118 (299)
T 2h1r_A          105 ---PKFDVCTANIPYKI  118 (299)
T ss_dssp             ---CCCSEEEEECCGGG
T ss_pred             ---ccCCEEEEcCCccc
Confidence               46999999987543

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.25  E-value=3.4e-11  Score=94.22  Aligned_cols=93  Identities=14%  Similarity=0.215  Sum_probs=75.2

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      .++.+|||+|||+|.++..++...   .+++++|+++.+++.++++.     .+ +++..+|+.+..+ .   +.||+|+
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~-----~~-~~~~~~d~~~~~~-~---~~~D~v~  105 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEF---GDTAGLELSEDMLTHARKRL-----PD-ATLHQGDMRDFRL-G---RKFSAVV  105 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHH---SEEEEEESCHHHHHHHHHHC-----TT-CEEEECCTTTCCC-S---SCEEEEE
T ss_pred             CCCCeEEEecccCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhC-----CC-CEEEECCHHHccc-C---CCCcEEE
Confidence            677899999999999999998884   38999999999999998863     23 7889999876333 2   6899998


Q ss_pred             EeC------C---ChhchHHHHHhcccCCCEEEEE
Q 026506          187 LDL------P---QPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       187 ~~~------~---~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                      +..      +   ....+++++.+.|+|||.+++.
T Consensus       106 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (239)
T 3bxo_A          106 SMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVE  140 (239)
T ss_dssp             ECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             EcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            422      1   2246899999999999999865

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.25  E-value=5.3e-12  Score=102.73  Aligned_cols=118  Identities=15%  Similarity=0.164  Sum_probs=80.1

Q ss_pred             CCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeC----CHHHHHHHHHHHHHcCCCCcEEEEEc-cccCCCCCCCCC
Q 026506          105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDF----HEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPDEFS  179 (237)
Q Consensus       105 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~----~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~  179 (237)
                      .+.++.+|||+|||+|.++..+++.    ++|+++|+    ++.+++.+.  ....+. +.+.+..+ |+..  ++.   
T Consensus        79 ~~~~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~~--~~~~~~-~~v~~~~~~D~~~--l~~---  146 (305)
T 2p41_A           79 LVTPEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPIP--MSTYGW-NLVRLQSGVDVFF--IPP---  146 (305)
T ss_dssp             SSCCCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCCC--CCSTTG-GGEEEECSCCTTT--SCC---
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHHH--hhhcCC-CCeEEEecccccc--CCc---
Confidence            3577899999999999999888765    47999998    454332111  011111 34888888 8764  333   


Q ss_pred             CCCCEEEEeCCCh---h--------chHHHHHhcccCCCEEEEEeCCH--HHHHHHHHHHHhcCcccc
Q 026506          180 GLADSIFLDLPQP---W--------LAIPSAKKMLKQDGILCSFSPCI--EQVQRSCESLRLNFTGKE  234 (237)
Q Consensus       180 ~~~D~v~~~~~~~---~--------~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~l~~~f~~v~  234 (237)
                      ..||+|++|....   +        .++..+.+.|||||.+++-....  .....++..++..|..+.
T Consensus       147 ~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~~~~~~~~~l~~l~~~f~~v~  214 (305)
T 2p41_A          147 ERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRKHGGAL  214 (305)
T ss_dssp             CCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHHHCCEE
T ss_pred             CCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCchHHHHHHHHHHHcCCEE
Confidence            6799999986531   1        36788889999999988755433  455666676666555443

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=99.24  E-value=9.6e-12  Score=104.00  Aligned_cols=180  Identities=20%  Similarity=0.192  Sum_probs=110.7

Q ss_pred             cCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCC-------CceEEeccCcEE-EEECCCHHHHhh
Q 026506           12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPF-------GSMVFSNKGGFV-YLLAPTPELWTL   83 (237)
Q Consensus        12 ~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------g~~~~~~~~~~~-~~~~~~~~~~~~   83 (237)
                      -...|++||||++.+.       ...||.|..|+.|..+.|......+       |.   ...|+|. |...|...  ..
T Consensus        94 ~V~~~~vGDrV~~~~~-------~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~g~---~~~G~~aeyv~v~~~~--~~  161 (369)
T 1uuf_A           94 QVEKYAPGDLVGVGCI-------VDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPG---HTLGGYSQQIVVHERY--VL  161 (369)
T ss_dssp             TCCSCCTTCEEEECSE-------EECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTS---BCCCSSBSEEEEEGGG--CE
T ss_pred             CCCCCCCCCEEEEccC-------CCCCCCCcccCCCCcccCcchhcccccccccCCC---CCCCcccceEEEcchh--EE
Confidence            3467999999998542       1139999999999988887321011       21   1124444 33333211  11


Q ss_pred             hcCCc------cccc-ccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026506           84 VLSHR------TQIL-YIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE  154 (237)
Q Consensus        84 ~~~~~------~~~~-~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~  154 (237)
                      .++..      +..+ .....+ ..+..+++++|++||.+|+|+ |.+++++++..+  .+|++++.+++.++.+++   
T Consensus       162 ~~P~~~ls~~~aa~l~~~~~tA~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~Vi~~~~~~~~~~~a~~---  236 (369)
T 1uuf_A          162 RIRHPQEQLAAVAPLLCAGITTYSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAKREAAKA---  236 (369)
T ss_dssp             ECCSCGGGHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHH---
T ss_pred             ECCCCCCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH---
Confidence            11211      1111 111111 244456889999999999988 888888888863  469999999999998876   


Q ss_pred             HcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCC
Q 026506          155 RTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       155 ~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                       .|.+..++....|.. ....    +++|+||.....+ ..++.+.+.|+++|+++.++..
T Consensus       237 -lGa~~vi~~~~~~~~-~~~~----~g~Dvvid~~g~~-~~~~~~~~~l~~~G~iv~~G~~  290 (369)
T 1uuf_A          237 -LGADEVVNSRNADEM-AAHL----KSFDFILNTVAAP-HNLDDFTTLLKRDGTMTLVGAP  290 (369)
T ss_dssp             -HTCSEEEETTCHHHH-HTTT----TCEEEEEECCSSC-CCHHHHHTTEEEEEEEEECCCC
T ss_pred             -cCCcEEeccccHHHH-HHhh----cCCCEEEECCCCH-HHHHHHHHHhccCCEEEEeccC
Confidence             465432222111211 1111    4699987655543 3688999999999999987654

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.23  E-value=2.9e-12  Score=102.23  Aligned_cols=125  Identities=14%  Similarity=0.038  Sum_probs=80.1

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEE--EccccCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE-RTGVSSFVTVG--VRDIQGQGFPD  176 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~i~~~--~~d~~~~~~~~  176 (237)
                      +.+...+.++.+|||+|||+|.++..++..    .+|+++|+++ +...+++... .......+.+.  .+|+.+  ++.
T Consensus        66 i~~~~~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~--l~~  138 (265)
T 2oxt_A           66 MEERGYVELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHT--LPV  138 (265)
T ss_dssp             HHHHTSCCCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTT--SCC
T ss_pred             HHHcCCCCCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhH--CCC
Confidence            334444678999999999999999887765    5799999988 4322221100 00011136777  888875  443


Q ss_pred             CCCCCCCEEEEeCC----Chh-------chHHHHHhcccCCC--EEEEEeCC--HHHHHHHHHHHHhcCcccc
Q 026506          177 EFSGLADSIFLDLP----QPW-------LAIPSAKKMLKQDG--ILCSFSPC--IEQVQRSCESLRLNFTGKE  234 (237)
Q Consensus       177 ~~~~~~D~v~~~~~----~~~-------~~l~~~~~~L~~gG--~l~~~~~~--~~~~~~~~~~l~~~f~~v~  234 (237)
                         +.||+|+++..    .+.       .+++.+.+.|+|||  .+++-...  ...+.+.++.++..|..+.
T Consensus       139 ---~~fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~~~~~~~~l~~l~~~f~~v~  208 (265)
T 2oxt_A          139 ---ERTDVIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPYSVEVMERLSVMQRKWGGGL  208 (265)
T ss_dssp             ---CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHHHHHHHHHHCCEE
T ss_pred             ---CCCcEEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCCChhHHHHHHHHHHHcCCEE
Confidence               68999999865    110       26788899999999  88865433  2222255555555555443

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.23  E-value=2.5e-12  Score=103.20  Aligned_cols=123  Identities=15%  Similarity=0.085  Sum_probs=79.5

Q ss_pred             HHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEE--EccccCCCCCCC
Q 026506          101 IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE-RTGVSSFVTVG--VRDIQGQGFPDE  177 (237)
Q Consensus       101 ~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~i~~~--~~d~~~~~~~~~  177 (237)
                      .+...+.++.+|||+|||+|.++..+++.    ++|+++|+++ ++..+++... ......++.+.  .+|+.+  ++. 
T Consensus        75 ~~~~~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~--l~~-  146 (276)
T 2wa2_A           75 DERGGVELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTK--MEP-  146 (276)
T ss_dssp             HHTTSCCCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGG--CCC-
T ss_pred             HHcCCCCCCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhh--CCC-
Confidence            33334678899999999999999887765    5799999988 4332222100 00111137778  888875  443 


Q ss_pred             CCCCCCEEEEeCC----Chh-------chHHHHHhcccCCC--EEEEEe--CCHHHHHHHHHHHHhcCccc
Q 026506          178 FSGLADSIFLDLP----QPW-------LAIPSAKKMLKQDG--ILCSFS--PCIEQVQRSCESLRLNFTGK  233 (237)
Q Consensus       178 ~~~~~D~v~~~~~----~~~-------~~l~~~~~~L~~gG--~l~~~~--~~~~~~~~~~~~l~~~f~~v  233 (237)
                        +.||+|+++..    .+.       .+++.+.+.|+|||  .+++-.  |....+.++++.++..|..+
T Consensus       147 --~~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~~~~~~~~~l~~l~~~f~~v  215 (276)
T 2wa2_A          147 --FQADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNPYSCDVLEALMKMQARFGGG  215 (276)
T ss_dssp             --CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCCCSHHHHHHHHHHHHHHCCE
T ss_pred             --CCcCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCCCchhHHHHHHHHHHHcCCE
Confidence              78999999865    111       26888899999999  887644  33332335555555545444

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=99.22  E-value=8e-12  Score=104.91  Aligned_cols=184  Identities=15%  Similarity=0.142  Sum_probs=110.2

Q ss_pred             CCCCCCEEEEEEcCCcEEEEEEcCCCeeeec-cceeeccccccCCCCce-----EEeccCcEE-EEEC-CCHHHHhh--h
Q 026506           15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNR-FGAFKHSDWIGKPFGSM-----VFSNKGGFV-YLLA-PTPELWTL--V   84 (237)
Q Consensus        15 ~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~g~~-----~~~~~~~~~-~~~~-~~~~~~~~--~   84 (237)
                      .|++||||.+.+..+        ||.|..|+ .|..+.|..... .|..     .....|+|. |... |....+..  .
T Consensus        97 ~~~vGdrV~~~~~~~--------cg~C~~C~~~g~~~~C~~~~~-~g~~~~~~~~~~~~G~~aey~~v~~~~~~~~iP~~  167 (380)
T 1vj0_A           97 LLKPGDLIVWNRGIT--------CGECYWCKVSKEPYLCPNRKV-YGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEK  167 (380)
T ss_dssp             BCCTTCEEEECSEEC--------CSSSHHHHTSCCGGGCTTCEE-TTTTCCSSSTTCCCSSSBSEEEECTTCCEEEECTT
T ss_pred             CCCCCCEEEEcccCC--------CCCCHHHhcCCCcccCCCcce-eccccccCCCCCCCccccceEEEcccceEEECCCC
Confidence            799999999976444        99999999 888887763210 1100     000123333 3333 32111100  0


Q ss_pred             cC-C-cccccccccHH-HHHHhcC-CCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC
Q 026506           85 LS-H-RTQILYIADIS-FVIMYLE-LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS  159 (237)
Q Consensus        85 ~~-~-~~~~~~~~~~~-~~~~~~~-~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~  159 (237)
                      ++ . .+..+.+...+ ..+..++ +++|++||.+|+|+ |..++++++..+ ..+|++++.+++.++.+++    +|.+
T Consensus       168 l~~~~~Aa~~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~~----lGa~  242 (380)
T 1vj0_A          168 DDLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEE----IGAD  242 (380)
T ss_dssp             SCHHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHH----TTCS
T ss_pred             CChHHhHhhhcHHHHHHHHHHhcCCCCCCCEEEEECcCHHHHHHHHHHHHcC-CceEEEEcCCHHHHHHHHH----cCCc
Confidence            11 1 12222222222 2445667 88999999999887 888888888863 2589999999999998875    5654


Q ss_pred             CcEEEE---EccccCCCCCCCC-CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          160 SFVTVG---VRDIQGQGFPDEF-SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       160 ~~i~~~---~~d~~~~~~~~~~-~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ..++..   ..|+.+ .+.... +.++|+||.....+ ..++.+.+.|+++|+++.++.
T Consensus       243 ~vi~~~~~~~~~~~~-~v~~~~~g~g~Dvvid~~g~~-~~~~~~~~~l~~~G~iv~~G~  299 (380)
T 1vj0_A          243 LTLNRRETSVEERRK-AIMDITHGRGADFILEATGDS-RALLEGSELLRRGGFYSVAGV  299 (380)
T ss_dssp             EEEETTTSCHHHHHH-HHHHHTTTSCEEEEEECSSCT-THHHHHHHHEEEEEEEEECCC
T ss_pred             EEEeccccCcchHHH-HHHHHhCCCCCcEEEECCCCH-HHHHHHHHHHhcCCEEEEEec
Confidence            322221   112111 011111 13699987665543 378999999999999997754

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=99.20  E-value=6.6e-12  Score=104.65  Aligned_cols=176  Identities=16%  Similarity=0.148  Sum_probs=107.4

Q ss_pred             CCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCC------CceEEeccCcEE-EEECCCHHHHhhhcCC
Q 026506           15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPF------GSMVFSNKGGFV-YLLAPTPELWTLVLSH   87 (237)
Q Consensus        15 ~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------g~~~~~~~~~~~-~~~~~~~~~~~~~~~~   87 (237)
                      .|++||||.+...       ...||.|..|+.|..+.|......+      |.   ...|++. |...|....  ..++.
T Consensus        84 ~~~~GdrV~~~~~-------~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~---~~~G~~aey~~v~~~~~--~~iP~  151 (360)
T 1piw_A           84 GLKVGQRVGVGAQ-------VFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGY---VSQGGYANYVRVHEHFV--VPIPE  151 (360)
T ss_dssp             SCCTTCEEEECSE-------EECCSCSHHHHTTCGGGCTTCEESSSCBCTTSC---BCCCSSBSEEEEEGGGE--EECCT
T ss_pred             CCCCCCEEEEecC-------CCCCCCChhhcCCCcccCcchhhccccccCCCc---cCCCcceeEEEEchhhe--EECCC
Confidence            7999999976431       1239999999999988886330011      21   1234443 333332111  11111


Q ss_pred             c-----ccccc-cccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC
Q 026506           88 R-----TQILY-IADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS  159 (237)
Q Consensus        88 ~-----~~~~~-~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~  159 (237)
                      .     +..+. ....+ ..+...++++|++||.+|+|+ |.++.++++..+  .+|++++.+++.++.+++    .|.+
T Consensus       152 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~~~qlak~~G--a~Vi~~~~~~~~~~~~~~----lGa~  225 (360)
T 1piw_A          152 NIPSHLAAPLLCGGLTVYSPLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKREDAMK----MGAD  225 (360)
T ss_dssp             TSCHHHHGGGGTHHHHHHHHHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHH----HTCS
T ss_pred             CCCHHHhhhhhhhHHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHH----cCCC
Confidence            1     11111 11111 244457889999999999987 888888888874  479999999999888876    4654


Q ss_pred             CcEEEEEc-cccCCCCCCCCCCCCCEEEEeCCCh-hchHHHHHhcccCCCEEEEEe
Q 026506          160 SFVTVGVR-DIQGQGFPDEFSGLADSIFLDLPQP-WLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       160 ~~i~~~~~-d~~~~~~~~~~~~~~D~v~~~~~~~-~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ..++.... |+.+ .+.    +++|+||...+.. ...++.+.+.|+++|+++.++
T Consensus       226 ~v~~~~~~~~~~~-~~~----~~~D~vid~~g~~~~~~~~~~~~~l~~~G~iv~~g  276 (360)
T 1piw_A          226 HYIATLEEGDWGE-KYF----DTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSIS  276 (360)
T ss_dssp             EEEEGGGTSCHHH-HSC----SCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECC
T ss_pred             EEEcCcCchHHHH-Hhh----cCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEec
Confidence            32221111 2111 111    4699988665540 237788999999999998764

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.19  E-value=1.1e-10  Score=97.60  Aligned_cols=100  Identities=18%  Similarity=0.264  Sum_probs=76.8

Q ss_pred             HHHhcC-CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          100 VIMYLE-LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       100 ~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      ++..+. ..+..+|||+|||+|.++..+++.. +..+++++|+ +.+++.++++       .++++..+|+.+ +++.  
T Consensus       194 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~p~--  261 (368)
T 3reo_A          194 ILEMYNGFEGLTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFD-GVPK--  261 (368)
T ss_dssp             HHTTCCTTTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CCCC--
T ss_pred             HHHhcccccCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCC-CCCC--
Confidence            334444 5677899999999999999999886 5678999999 8888766541       349999999984 5553  


Q ss_pred             CCCCCEEEEeC-----CCh--hchHHHHHhcccCCCEEEEEeC
Q 026506          179 SGLADSIFLDL-----PQP--WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       179 ~~~~D~v~~~~-----~~~--~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                       +  |+|++..     ++.  ..+++++.+.|+|||++++...
T Consensus       262 -~--D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  301 (368)
T 3reo_A          262 -G--DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEY  301 (368)
T ss_dssp             -C--SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             -C--CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence             3  9998643     222  2579999999999999998753

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.19  E-value=3.4e-11  Score=102.25  Aligned_cols=116  Identities=19%  Similarity=0.179  Sum_probs=87.7

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .++..+...++.+|||+|||+|.++..+++..++..+++++|+++.+++.|          ..+++..+|+.... +.  
T Consensus        30 ~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~~~-~~--   96 (421)
T 2ih2_A           30 FMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLLWE-PG--   96 (421)
T ss_dssp             HHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGGCC-CS--
T ss_pred             HHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChhhcC-cc--
Confidence            366667665677999999999999999998864557999999999988766          23889999997522 22  


Q ss_pred             CCCCCEEEEeCCCh----------------------------------hchHHHHHhcccCCCEEEEEeCCH----HHHH
Q 026506          179 SGLADSIFLDLPQP----------------------------------WLAIPSAKKMLKQDGILCSFSPCI----EQVQ  220 (237)
Q Consensus       179 ~~~~D~v~~~~~~~----------------------------------~~~l~~~~~~L~~gG~l~~~~~~~----~~~~  220 (237)
                       ++||+|+.|+|-.                                  ..+++.+.+.|+|||+++++.|..    .+.+
T Consensus        97 -~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~  175 (421)
T 2ih2_A           97 -EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFA  175 (421)
T ss_dssp             -SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGH
T ss_pred             -CCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHH
Confidence             6799999986521                                  034788999999999999888753    2345


Q ss_pred             HHHHHHHh
Q 026506          221 RSCESLRL  228 (237)
Q Consensus       221 ~~~~~l~~  228 (237)
                      .+.+.+.+
T Consensus       176 ~lr~~l~~  183 (421)
T 2ih2_A          176 LLREFLAR  183 (421)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            55555555

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.18  E-value=1.4e-10  Score=96.70  Aligned_cols=100  Identities=18%  Similarity=0.202  Sum_probs=77.6

Q ss_pred             HHHhcC-CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          100 VIMYLE-LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       100 ~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      ++..+. ..+..+|||+|||+|.++..+++.. +..+++++|+ +.+++.+++.       .++++..+|+.+ +++.  
T Consensus       192 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~--  259 (364)
T 3p9c_A          192 LLELYHGFEGLGTLVDVGGGVGATVAAIAAHY-PTIKGVNFDL-PHVISEAPQF-------PGVTHVGGDMFK-EVPS--  259 (364)
T ss_dssp             HHHHCCTTTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CCCC--
T ss_pred             HHHhcccccCCCEEEEeCCCCCHHHHHHHHHC-CCCeEEEecC-HHHHHhhhhc-------CCeEEEeCCcCC-CCCC--
Confidence            444454 6778899999999999999999886 5678999999 8887766541       349999999985 5553  


Q ss_pred             CCCCCEEEEeC-----CCh--hchHHHHHhcccCCCEEEEEeC
Q 026506          179 SGLADSIFLDL-----PQP--WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       179 ~~~~D~v~~~~-----~~~--~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                       +  |+|++..     ++.  ..+++++.+.|+|||++++...
T Consensus       260 -~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~  299 (364)
T 3p9c_A          260 -G--DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQC  299 (364)
T ss_dssp             -C--SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             -C--CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence             3  9998643     222  2579999999999999998753

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.18  E-value=1.2e-10  Score=91.03  Aligned_cols=102  Identities=20%  Similarity=0.290  Sum_probs=66.5

Q ss_pred             HHHhcCCC-CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE-EccccC---CCC
Q 026506          100 VIMYLELV-PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG-VRDIQG---QGF  174 (237)
Q Consensus       100 ~~~~~~~~-~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~-~~d~~~---~~~  174 (237)
                      ++..+... ++.+|||+|||+|.++..+++.  +..+|+++|+++.+++.++++..     . +... ..++..   ..+
T Consensus        28 ~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~--g~~~V~gvDis~~ml~~a~~~~~-----~-~~~~~~~~~~~~~~~~~   99 (232)
T 3opn_A           28 ALKEFHLEINGKTCLDIGSSTGGFTDVMLQN--GAKLVYALDVGTNQLAWKIRSDE-----R-VVVMEQFNFRNAVLADF   99 (232)
T ss_dssp             HHHHTTCCCTTCEEEEETCTTSHHHHHHHHT--TCSEEEEECSSCCCCCHHHHTCT-----T-EEEECSCCGGGCCGGGC
T ss_pred             HHHHcCCCCCCCEEEEEccCCCHHHHHHHhc--CCCEEEEEcCCHHHHHHHHHhCc-----c-ccccccceEEEeCHhHc
Confidence            55555544 4679999999999999888876  33599999999999998776422     1 2111 112211   111


Q ss_pred             CCCCCCCCCEEEEeCC--ChhchHHHHHhcccCCCEEEEE
Q 026506          175 PDEFSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       175 ~~~~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                      +.   ..+|.+..|..  ....+++++.+.|||||.+++.
T Consensus       100 ~~---~~~d~~~~D~v~~~l~~~l~~i~rvLkpgG~lv~~  136 (232)
T 3opn_A          100 EQ---GRPSFTSIDVSFISLDLILPPLYEILEKNGEVAAL  136 (232)
T ss_dssp             CS---CCCSEEEECCSSSCGGGTHHHHHHHSCTTCEEEEE
T ss_pred             Cc---CCCCEEEEEEEhhhHHHHHHHHHHhccCCCEEEEE
Confidence            11   12344333321  2256899999999999999876

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.18  E-value=3.7e-11  Score=96.10  Aligned_cols=102  Identities=21%  Similarity=0.290  Sum_probs=74.0

Q ss_pred             CCCEEEEEccCccH----HHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHH-----------------------cC
Q 026506          108 PGCLVLESGTGSGS----LTTSLARAVAP---TGHVYTFDFHEQRAASAREDFER-----------------------TG  157 (237)
Q Consensus       108 ~~~~vldiG~G~G~----~~~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~-----------------------~~  157 (237)
                      ++.+|||+|||+|.    +++.++...+.   ..+|+++|+|+.+++.|+++...                       .+
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45799999999998    55556666542   35899999999999999986410                       00


Q ss_pred             -------CCCcEEEEEccccCCCCCCCCCCCCCEEEEeCC-------ChhchHHHHHhcccCCCEEEE
Q 026506          158 -------VSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP-------QPWLAIPSAKKMLKQDGILCS  211 (237)
Q Consensus       158 -------~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~-------~~~~~l~~~~~~L~~gG~l~~  211 (237)
                             +...+.+...|+.+.+++.  .+.||+|++...       ....+++++.+.|+|||.+++
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~--~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l  250 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNV--PGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA  250 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCC--CCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             ceeechhhcccCeEEecccCCCCCCc--CCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence                   0124899999998644441  167999987321       124689999999999999984

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=99.18  E-value=1.9e-11  Score=101.27  Aligned_cols=183  Identities=16%  Similarity=0.077  Sum_probs=111.5

Q ss_pred             cCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc--
Q 026506           12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR--   88 (237)
Q Consensus        12 ~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--   88 (237)
                      -...|++||||.+....+       .|+.|..|..+..+.|..... .+.   ...|++. |...|....+  ..+..  
T Consensus        72 ~V~~~~~GdrV~~~~~~~-------~~g~~~~~~~~~~~~~~~~~~-~~~---~~~G~~ae~~~~~~~~~~--~iP~~~~  138 (348)
T 4eez_A           72 DVSSLQVGDRVSVAWFFE-------GCGHCEYCVSGNETFCREVKN-AGY---SVDGGMAEEAIVVADYAV--KVPDGLD  138 (348)
T ss_dssp             TCCSCCTTCEEEEESEEE-------CCSSSHHHHTTCGGGCTTCEE-BTT---TBCCSSBSEEEEEGGGSC--BCCTTSC
T ss_pred             eeeecccCCeEeeccccc-------ccCccccccCCcccccccccc-ccc---ccCCcceeecccccccee--ecCCCCC
Confidence            456899999999865222       278888888887776653321 111   1234443 3333322211  11211  


Q ss_pred             ---ccccccc-cHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcE
Q 026506           89 ---TQILYIA-DIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFV  162 (237)
Q Consensus        89 ---~~~~~~~-~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i  162 (237)
                         +..+... ..+ ..+.....++|++||.+|+|+ |.++.++++..+ ..+|+++|.+++.++.+++    .|.+..+
T Consensus       139 ~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~-g~~Vi~~~~~~~r~~~~~~----~Ga~~~i  213 (348)
T 4eez_A          139 PIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVF-GAKVIAVDINQDKLNLAKK----IGADVTI  213 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTS-CCEEEEEESCHHHHHHHHH----TTCSEEE
T ss_pred             HHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhC-CCEEEEEECcHHHhhhhhh----cCCeEEE
Confidence               1111111 111 244566789999999999998 566777777654 4799999999999888876    5765545


Q ss_pred             EEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          163 TVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       163 ~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +....|+.+.......+.++|.++.+..... .+..+.+.|+++|++++++
T Consensus       214 ~~~~~~~~~~v~~~t~g~g~d~~~~~~~~~~-~~~~~~~~l~~~G~~v~~g  263 (348)
T 4eez_A          214 NSGDVNPVDEIKKITGGLGVQSAIVCAVARI-AFEQAVASLKPMGKMVAVA  263 (348)
T ss_dssp             EC-CCCHHHHHHHHTTSSCEEEEEECCSCHH-HHHHHHHTEEEEEEEEECC
T ss_pred             eCCCCCHHHHhhhhcCCCCceEEEEeccCcc-hhheeheeecCCceEEEEe
Confidence            5544444321111111246888777766544 8899999999999998654

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.17  E-value=3.1e-11  Score=93.10  Aligned_cols=104  Identities=21%  Similarity=0.194  Sum_probs=79.1

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..++.+|||+|||+|.++..++      .+++++|+++.                .+++..+|+.+.+++.   +.||+|
T Consensus        65 ~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~----------------~~~~~~~d~~~~~~~~---~~fD~v  119 (215)
T 2zfu_A           65 RPASLVVADFGCGDCRLASSIR------NPVHCFDLASL----------------DPRVTVCDMAQVPLED---ESVDVA  119 (215)
T ss_dssp             SCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS----------------STTEEESCTTSCSCCT---TCEEEE
T ss_pred             cCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC----------------CceEEEeccccCCCCC---CCEeEE
Confidence            4677899999999999886652      68999999887                1556788887644444   679999


Q ss_pred             EEeC----CChhchHHHHHhcccCCCEEEEEeCCH--HHHHHHHHHHHh-cCcccc
Q 026506          186 FLDL----PQPWLAIPSAKKMLKQDGILCSFSPCI--EQVQRSCESLRL-NFTGKE  234 (237)
Q Consensus       186 ~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~l~~-~f~~v~  234 (237)
                      ++..    .+...+++++.+.|+|||.+++..+..  ...+++.+.+++ ||..++
T Consensus       120 ~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~  175 (215)
T 2zfu_A          120 VFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVS  175 (215)
T ss_dssp             EEESCCCSSCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEE
T ss_pred             EEehhccccCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEE
Confidence            8753    355678999999999999999876543  245677777877 787554

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.17  E-value=2.4e-10  Score=102.76  Aligned_cols=125  Identities=20%  Similarity=0.201  Sum_probs=94.1

Q ss_pred             cccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhC----------------------------------------
Q 026506           92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVA----------------------------------------  131 (237)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~----------------------------------------  131 (237)
                      +.+..++.++...+..++..++|.+||+|.+++..+....                                        
T Consensus       174 l~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~  253 (703)
T 3v97_A          174 IKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLA  253 (703)
T ss_dssp             SCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccc
Confidence            3334444577778888999999999999999988776531                                        


Q ss_pred             -CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCCh---------h---chHHH
Q 026506          132 -PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP---------W---LAIPS  198 (237)
Q Consensus       132 -~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~---------~---~~l~~  198 (237)
                       +..+++++|+++.+++.|++|+...|+.+.+++..+|+.+...+. ..+.||+|+.|+|--         .   ..+.+
T Consensus       254 ~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~-~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~  332 (703)
T 3v97_A          254 EYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPL-PKGPYGTVLSNPPYGERLDSEPALIALHSLLGR  332 (703)
T ss_dssp             HCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSC-TTCCCCEEEECCCCCC---CCHHHHHHHHHHHH
T ss_pred             cCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCcccc-ccCCCCEEEeCCCccccccchhHHHHHHHHHHH
Confidence             125799999999999999999999999888999999998632221 113799999998821         1   12444


Q ss_pred             HHhcccCCCEEEEEeCCHH
Q 026506          199 AKKMLKQDGILCSFSPCIE  217 (237)
Q Consensus       199 ~~~~L~~gG~l~~~~~~~~  217 (237)
                      ..+.+.|||.++++++...
T Consensus       333 ~lk~~~~g~~~~ilt~~~~  351 (703)
T 3v97_A          333 IMKNQFGGWNLSLFSASPD  351 (703)
T ss_dssp             HHHHHCTTCEEEEEESCHH
T ss_pred             HHHhhCCCCeEEEEeCCHH
Confidence            5556668999999988654

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.17  E-value=1.7e-10  Score=90.29  Aligned_cols=100  Identities=15%  Similarity=0.112  Sum_probs=80.4

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      .+..+|||+|||+|-++..++... +..+|+++|+++.+++.+++++..+|+.  ..+...|.... .+.   +.||+++
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~-p~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~~-~p~---~~~DvaL  203 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLP-AETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLED-RLD---EPADVTL  203 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCC-TTCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTTS-CCC---SCCSEEE
T ss_pred             CCCceeeeeccCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeeccc-CCC---CCcchHH
Confidence            457799999999999998887753 6789999999999999999999998865  78888998743 343   7899998


Q ss_pred             EeCCCh-------hchHHHHHhcccCCCEEEEEeC
Q 026506          187 LDLPQP-------WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       187 ~~~~~~-------~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +...-+       ...+ ++++.|+++|.++.+-.
T Consensus       204 ~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~  237 (281)
T 3lcv_B          204 LLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPT  237 (281)
T ss_dssp             ETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEEC
T ss_pred             HHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccc
Confidence            754311       2344 89999999999996543

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.16  E-value=2.5e-10  Score=87.03  Aligned_cols=106  Identities=19%  Similarity=0.182  Sum_probs=77.4

Q ss_pred             CCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       105 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      ...++.+|||+|||+|.++..++..  +..+++++|+++.+++.+++++.      ++++..+|+.+  ++    +.||+
T Consensus        48 ~~~~~~~vlD~gcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~--~~----~~~D~  113 (200)
T 1ne2_A           48 GNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSE--IS----GKYDT  113 (200)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGG--CC----CCEEE
T ss_pred             CCCCCCEEEEEeCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHH--CC----CCeeE
Confidence            4567889999999999999888876  34689999999999999999753      38899999875  33    57999


Q ss_pred             EEEeCCC-------hhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh
Q 026506          185 IFLDLPQ-------PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL  228 (237)
Q Consensus       185 v~~~~~~-------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~  228 (237)
                      |++++|-       ...+++.+.+.+  |+ +++..+. .......+.+++
T Consensus       114 v~~~~p~~~~~~~~~~~~l~~~~~~~--g~-~~~~~~~-~~~~~~~~~~~~  160 (200)
T 1ne2_A          114 WIMNPPFGSVVKHSDRAFIDKAFETS--MW-IYSIGNA-KARDFLRREFSA  160 (200)
T ss_dssp             EEECCCC-------CHHHHHHHHHHE--EE-EEEEEEG-GGHHHHHHHHHH
T ss_pred             EEECCCchhccCchhHHHHHHHHHhc--Cc-EEEEEcC-chHHHHHHHHHH
Confidence            9998762       124678888887  44 4433322 233444444544

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=99.16  E-value=9.5e-12  Score=103.58  Aligned_cols=180  Identities=15%  Similarity=0.109  Sum_probs=108.8

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEc--CCCeeeeccceeeccccccCCC--CceEEeccCcEE-EEECCCHHHHh--hhcC
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVC--QNSAFQNRFGAFKHSDWIGKPF--GSMVFSNKGGFV-YLLAPTPELWT--LVLS   86 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~--g~~~~~~~~~~~-~~~~~~~~~~~--~~~~   86 (237)
                      ..|++||||.+..        ...  ||.|..|+.|..+.|..... .  |..  ...|+|. |...|....+.  ..++
T Consensus        75 ~~~~vGdrV~~~~--------~~~~~cg~C~~C~~g~~~~C~~~~~-~~~g~~--~~~G~~aey~~v~~~~~~~iP~~~~  143 (357)
T 2b5w_A           75 TELEEGDIVVPTV--------RRPPASGTNEYFERDQPDMAPDGMY-FERGIV--GAHGYMSEFFTSPEKYLVRIPRSQA  143 (357)
T ss_dssp             SSCCTTCEEEECS--------EECCTTCCCHHHHTTCGGGCCTTSC-EEETTB--EECCSCBSEEEEEGGGEEECCGGGS
T ss_pred             CCCCCCCEEEECC--------cCCCCCCCChHHhCcCcccCCCCcc-cccCcc--CCCcceeeEEEEchHHeEECCCCcc
Confidence            5799999999864        223  89999999999888874221 1  210  1134444 33333221110  1111


Q ss_pred             CcccccccccHHH-HHHhcCCCCC------CEEEEEccCc-cHHH-HHHH-HHhCCCcEEEEEeCCHH---HHHHHHHHH
Q 026506           87 HRTQILYIADISF-VIMYLELVPG------CLVLESGTGS-GSLT-TSLA-RAVAPTGHVYTFDFHEQ---RAASAREDF  153 (237)
Q Consensus        87 ~~~~~~~~~~~~~-~~~~~~~~~~------~~vldiG~G~-G~~~-~~~~-~~~~~~~~v~~vD~~~~---~~~~a~~~~  153 (237)
                      ..+.+..+...+. .+...++++|      ++||.+|+|+ |.++ ++++ +.. +..+|++++.+++   .++.+++  
T Consensus       144 ~~aal~~~~~ta~~al~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~-Ga~~Vi~~~~~~~~~~~~~~~~~--  220 (357)
T 2b5w_A          144 ELGFLIEPISITEKALEHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDK-GYENLYCLGRRDRPDPTIDIIEE--  220 (357)
T ss_dssp             TTGGGHHHHHHHHHHHHHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTT-CCCEEEEEECCCSSCHHHHHHHH--
T ss_pred             hhhhhhchHHHHHHHHHhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHc-CCcEEEEEeCCcccHHHHHHHHH--
Confidence            1222222322222 3455567888      9999999987 7788 8888 665 3345999999988   8888875  


Q ss_pred             HHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          154 ERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       154 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                        +|.+. ++....|+. . +... .+++|+||...... ..++.+.+.|+++|+++.++.
T Consensus       221 --lGa~~-v~~~~~~~~-~-i~~~-~gg~Dvvid~~g~~-~~~~~~~~~l~~~G~iv~~g~  274 (357)
T 2b5w_A          221 --LDATY-VDSRQTPVE-D-VPDV-YEQMDFIYEATGFP-KHAIQSVQALAPNGVGALLGV  274 (357)
T ss_dssp             --TTCEE-EETTTSCGG-G-HHHH-SCCEEEEEECSCCH-HHHHHHHHHEEEEEEEEECCC
T ss_pred             --cCCcc-cCCCccCHH-H-HHHh-CCCCCEEEECCCCh-HHHHHHHHHHhcCCEEEEEeC
Confidence              56432 211111111 1 1111 14799987666543 378999999999999997753

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=99.15  E-value=2.1e-11  Score=101.07  Aligned_cols=183  Identities=18%  Similarity=0.241  Sum_probs=107.3

Q ss_pred             cCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCC-HHHHhh-hcCC-
Q 026506           12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPT-PELWTL-VLSH-   87 (237)
Q Consensus        12 ~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~-~~~~~~-~~~~-   87 (237)
                      -...|++||||+.....+        ||.|..|+.|..+.|..... .|.   ...|++. |...|. ...+.. .++. 
T Consensus        80 ~v~~~~vGdrV~~~~~~~--------Cg~C~~C~~g~~~~C~~~~~-~G~---~~~G~~aey~~v~~~~~~~~i~~~~~~  147 (347)
T 1jvb_A           80 EVVGYSKGDLVAVNPWQG--------EGNCYYCRIGEEHLCDSPRW-LGI---NFDGAYAEYVIVPHYKYMYKLRRLNAV  147 (347)
T ss_dssp             TCCSCCTTCEEEECCEEC--------CSSSHHHHTTCGGGCSSCEE-BTT---TBCCSSBSEEEESCGGGEEECSSSCHH
T ss_pred             CCCCCCCCCEEEeCCCCC--------CCCChhhhCcCcccCccccc-ccc---cCCCcceeEEEecCccceEEeCCCCHH
Confidence            346799999997655344        99999999999888863211 111   1123333 444443 221111 0000 


Q ss_pred             cccccc-cccHH-HHHHhcCCCCCCEEEEEccCc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 026506           88 RTQILY-IADIS-FVIMYLELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT  163 (237)
Q Consensus        88 ~~~~~~-~~~~~-~~~~~~~~~~~~~vldiG~G~--G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~  163 (237)
                      .+..+. ....+ ..+...+++++++||..|+|+  |..+.++++...+ .+|+++|.+++.++.+++    .+.+..++
T Consensus       148 ~aa~l~~~~~ta~~~l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~G-a~Vi~~~~~~~~~~~~~~----~g~~~~~~  222 (347)
T 1jvb_A          148 EAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVREEAVEAAKR----AGADYVIN  222 (347)
T ss_dssp             HHGGGGTHHHHHHHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESSHHHHHHHHH----HTCSEEEE
T ss_pred             HcccchhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----hCCCEEec
Confidence            011111 10111 244557789999999999983  6677777777512 579999999999888865    35432111


Q ss_pred             EEEccccCCCCCCCCC-CCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          164 VGVRDIQGQGFPDEFS-GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       164 ~~~~d~~~~~~~~~~~-~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ....+..+ ....... +++|+++.+.... ..++.+.+.|+++|+++.++
T Consensus       223 ~~~~~~~~-~~~~~~~~~~~d~vi~~~g~~-~~~~~~~~~l~~~G~iv~~g  271 (347)
T 1jvb_A          223 ASMQDPLA-EIRRITESKGVDAVIDLNNSE-KTLSVYPKALAKQGKYVMVG  271 (347)
T ss_dssp             TTTSCHHH-HHHHHTTTSCEEEEEESCCCH-HHHTTGGGGEEEEEEEEECC
T ss_pred             CCCccHHH-HHHHHhcCCCceEEEECCCCH-HHHHHHHHHHhcCCEEEEEC
Confidence            11111100 0111111 4799988666543 37889999999999998775

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.13  E-value=2.7e-10  Score=89.84  Aligned_cols=87  Identities=20%  Similarity=0.285  Sum_probs=68.2

Q ss_pred             HHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC
Q 026506           97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD  176 (237)
Q Consensus        97 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  176 (237)
                      ...++..+++.++++|||+|||+|.++..++...   .+++++|+++.+++.+++++..  . .++++..+|+.+.+++.
T Consensus        19 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~--~-~~v~~~~~D~~~~~~~~   92 (244)
T 1qam_A           19 IDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVD--H-DNFQVLNKDILQFKFPK   92 (244)
T ss_dssp             HHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTT--C-CSEEEECCCGGGCCCCS
T ss_pred             HHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhcc--C-CCeEEEEChHHhCCccc
Confidence            3446777788889999999999999999999873   7899999999999999998653  2 34999999998755542


Q ss_pred             CCCCCCCEEEEeCCCh
Q 026506          177 EFSGLADSIFLDLPQP  192 (237)
Q Consensus       177 ~~~~~~D~v~~~~~~~  192 (237)
                      .  ..| .|+.|+|-.
T Consensus        93 ~--~~~-~vv~nlPy~  105 (244)
T 1qam_A           93 N--QSY-KIFGNIPYN  105 (244)
T ss_dssp             S--CCC-EEEEECCGG
T ss_pred             C--CCe-EEEEeCCcc
Confidence            1  345 567777643

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=99.13  E-value=7.3e-10  Score=96.59  Aligned_cols=128  Identities=16%  Similarity=0.158  Sum_probs=98.1

Q ss_pred             ccccccccHHH-HHHhcC----CCCCCEEEEEccCccHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHHHHHcCCC-C
Q 026506           89 TQILYIADISF-VIMYLE----LVPGCLVLESGTGSGSLTTSLARAVA--PTGHVYTFDFHEQRAASAREDFERTGVS-S  160 (237)
Q Consensus        89 ~~~~~~~~~~~-~~~~~~----~~~~~~vldiG~G~G~~~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~  160 (237)
                      .+...|..+.. ++..+.    +.++.+|+|.+||+|++...++..+.  ....++|+|+++.+...|+.++..+|+. .
T Consensus       197 G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~  276 (542)
T 3lkd_A          197 GEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIE  276 (542)
T ss_dssp             SSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGG
T ss_pred             CeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcC
Confidence            44555666554 555554    56788999999999999988888752  2468999999999999999999888874 3


Q ss_pred             cEEEEEccccCCCCCCCCCCCCCEEEEeCCCh----------------------------hchHHHHHhccc-CCCEEEE
Q 026506          161 FVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP----------------------------WLAIPSAKKMLK-QDGILCS  211 (237)
Q Consensus       161 ~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~----------------------------~~~l~~~~~~L~-~gG~l~~  211 (237)
                      .+.+..+|.....++......||+|+.|+|-.                            ..+++.+.+.|+ +||++.+
T Consensus       277 ~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~  356 (542)
T 3lkd_A          277 NQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAI  356 (542)
T ss_dssp             GEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEE
T ss_pred             ccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEE
Confidence            48899999886533322236899999988710                            015788899999 9999999


Q ss_pred             EeCCH
Q 026506          212 FSPCI  216 (237)
Q Consensus       212 ~~~~~  216 (237)
                      +.|..
T Consensus       357 VlP~g  361 (542)
T 3lkd_A          357 VLPHG  361 (542)
T ss_dssp             EEETH
T ss_pred             Eecch
Confidence            98875

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.12  E-value=1.1e-10  Score=102.14  Aligned_cols=125  Identities=12%  Similarity=0.051  Sum_probs=95.3

Q ss_pred             ccccccccHH-HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCC-----------------CcEEEEEeCCHHHHHHHH
Q 026506           89 TQILYIADIS-FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAP-----------------TGHVYTFDFHEQRAASAR  150 (237)
Q Consensus        89 ~~~~~~~~~~-~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~-----------------~~~v~~vD~~~~~~~~a~  150 (237)
                      .+...|..+. .++..+.+.++.+|+|.+||+|.++..++..+..                 ..+++++|+++.+++.|+
T Consensus       149 G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~  228 (541)
T 2ar0_A          149 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL  228 (541)
T ss_dssp             -CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred             CeeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHH
Confidence            3444555544 4677788888999999999999999888876521                 137999999999999999


Q ss_pred             HHHHHcCCCC----cEEEEEccccCCC-CCCCCCCCCCEEEEeCCCh-------------------hchHHHHHhcccCC
Q 026506          151 EDFERTGVSS----FVTVGVRDIQGQG-FPDEFSGLADSIFLDLPQP-------------------WLAIPSAKKMLKQD  206 (237)
Q Consensus       151 ~~~~~~~~~~----~i~~~~~d~~~~~-~~~~~~~~~D~v~~~~~~~-------------------~~~l~~~~~~L~~g  206 (237)
                      .++..++..+    ..++..+|..... ...   +.||+|+.|+|-.                   ..+++.+.+.|+||
T Consensus       229 ~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~---~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~g  305 (541)
T 2ar0_A          229 MNCLLHDIEGNLDHGGAIRLGNTLGSDGENL---PKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG  305 (541)
T ss_dssp             HHHHTTTCCCBGGGTBSEEESCTTSHHHHTS---CCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEE
T ss_pred             HHHHHhCCCccccccCCeEeCCCcccccccc---cCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCC
Confidence            9988777653    2667888886422 122   6799999998721                   14789999999999


Q ss_pred             CEEEEEeCCH
Q 026506          207 GILCSFSPCI  216 (237)
Q Consensus       207 G~l~~~~~~~  216 (237)
                      |+++++.|..
T Consensus       306 Gr~a~V~p~~  315 (541)
T 2ar0_A          306 GRAAVVVPDN  315 (541)
T ss_dssp             EEEEEEEEHH
T ss_pred             CEEEEEecCc
Confidence            9999888754

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=99.11  E-value=2.5e-11  Score=101.39  Aligned_cols=178  Identities=19%  Similarity=0.079  Sum_probs=108.9

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCC--CceEEeccCcEE-EEECCCHHHHh--hhcCCc
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPF--GSMVFSNKGGFV-YLLAPTPELWT--LVLSHR   88 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--g~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~   88 (237)
                      ..|++||||++....+        ||.|..|+.|..+.|..... .  |..  ...|++. |...|....+.  ..++..
T Consensus        77 ~~~~~GDrV~~~~~~~--------cg~C~~C~~g~~~~C~~~~~-~~~g~~--~~~G~~aey~~v~~~~~~~iP~~l~~~  145 (366)
T 2cdc_A           77 HGFSQGDLVMPVNRRG--------CGICRNCLVGRPDFCETGEF-GEAGIH--KMDGFMREWWYDDPKYLVKIPKSIEDI  145 (366)
T ss_dssp             SSCCTTCEEEECSEEC--------CSSSHHHHTTCGGGCSSSCC-EEETTB--EECCSCBSEEEECGGGEEEECGGGTTT
T ss_pred             CCCCCCCEEEEcCCCC--------CCCChhhhCcCcccCCCCCc-ccCCcc--CCCCceeEEEEechHHeEECcCCcchh
Confidence            6799999999876444        99999999999888863211 1  110  0234444 44444322111  111112


Q ss_pred             ccccccccHH-HHHH-----hcCCC--C-------CCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCH---HHHHHH
Q 026506           89 TQILYIADIS-FVIM-----YLELV--P-------GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHE---QRAASA  149 (237)
Q Consensus        89 ~~~~~~~~~~-~~~~-----~~~~~--~-------~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~---~~~~~a  149 (237)
                      +....+...+ ..+.     ..+++  +       |++||.+|+|. |..+.++++..+  .+|++++.++   +.++.+
T Consensus       146 Aal~~~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~~  223 (366)
T 2cdc_A          146 GILAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYG--LEVWMANRREPTEVEQTVI  223 (366)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHHT--CEEEEEESSCCCHHHHHHH
T ss_pred             hhhcCcHHHHHHHHHhhhhcccCccccccccccCCCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCccchHHHHHH
Confidence            2222222222 2333     56677  8       99999999976 777888888763  4899999988   777777


Q ss_pred             HHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCChhchH-HHHHhcccCCCEEEEEeC
Q 026506          150 REDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAI-PSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       150 ~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l-~~~~~~L~~gG~l~~~~~  214 (237)
                      ++    .|.+. ++ .. |+.+ .+.. ..+++|+||...+... .+ +.+.+.|+++|+++.++.
T Consensus       224 ~~----~ga~~-v~-~~-~~~~-~~~~-~~~~~d~vid~~g~~~-~~~~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          224 EE----TKTNY-YN-SS-NGYD-KLKD-SVGKFDVIIDATGADV-NILGNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             HH----HTCEE-EE-CT-TCSH-HHHH-HHCCEEEEEECCCCCT-HHHHHHGGGEEEEEEEEECSC
T ss_pred             HH----hCCce-ec-hH-HHHH-HHHH-hCCCCCEEEECCCChH-HHHHHHHHHHhcCCEEEEEec
Confidence            65    45432 21 11 1111 0111 1146999887665543 66 899999999999987753

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.11  E-value=7.6e-11  Score=98.12  Aligned_cols=96  Identities=18%  Similarity=0.193  Sum_probs=71.6

Q ss_pred             CCCCEEEEEccC------ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC---
Q 026506          107 VPGCLVLESGTG------SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE---  177 (237)
Q Consensus       107 ~~~~~vldiG~G------~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~---  177 (237)
                      .++.+|||||||      +|+.+..+++...+.++|+++|+++.+.         ... .++++.++|+.+.++...   
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~-~rI~fv~GDa~dlpf~~~l~~  284 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDE-LRIRTIQGDQNDAEFLDRIAR  284 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCB-TTEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcC-CCcEEEEecccccchhhhhhc
Confidence            356899999999      7777777776654668999999999862         122 349999999976433300   


Q ss_pred             CCCCCCEEEEeCCC----hhchHHHHHhcccCCCEEEEE
Q 026506          178 FSGLADSIFLDLPQ----PWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       178 ~~~~~D~v~~~~~~----~~~~l~~~~~~L~~gG~l~~~  212 (237)
                      ..+.||+|+.+...    ...+|+++++.|||||++++.
T Consensus       285 ~d~sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvlVi~  323 (419)
T 3sso_A          285 RYGPFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVIE  323 (419)
T ss_dssp             HHCCEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ccCCccEEEECCcccchhHHHHHHHHHHhcCCCeEEEEE
Confidence            01689999987543    236799999999999999975

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=99.11  E-value=1.3e-11  Score=102.14  Aligned_cols=181  Identities=20%  Similarity=0.176  Sum_probs=106.4

Q ss_pred             cCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhh--hcC-C
Q 026506           12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTL--VLS-H   87 (237)
Q Consensus        12 ~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~--~~~-~   87 (237)
                      ....|++||||.+....+        ||.|..|+.|..+.|..... +|.   ...|+|. |...|....+..  .++ .
T Consensus        75 ~v~~~~vGdrV~~~~~~~--------cg~C~~C~~g~~~~C~~~~~-~g~---~~~G~~aey~~v~~~~~~~iP~~~~~~  142 (343)
T 2dq4_A           75 GVRRPQVGDHVSLESHIV--------CHACPACRTGNYHVCLNTQI-LGV---DRDGGFAEYVVVPAENAWVNPKDLPFE  142 (343)
T ss_dssp             TCCSSCTTCEEEECCEEC--------CSCSHHHHTTCGGGCTTCEE-BTT---TBCCSSBSEEEEEGGGEEEECTTSCHH
T ss_pred             CCCcCCCCCEEEECCCCC--------CCCChhhhCcCcccCCCcce-ecC---CCCCcceeEEEEchHHeEECCCCCCHH
Confidence            346799999999876444        99999999999888863211 111   0123333 333322111100  011 1


Q ss_pred             cccccccccHH-HHHH-hcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE
Q 026506           88 RTQILYIADIS-FVIM-YLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV  164 (237)
Q Consensus        88 ~~~~~~~~~~~-~~~~-~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~  164 (237)
                      .+..+.+...+ ..+. ..++ +|++||.+|+|. |..+.++++..+ ..+|++++.+++.++.+++.     .+..++.
T Consensus       143 ~aa~~~~~~ta~~~l~~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~G-a~~Vi~~~~~~~~~~~~~~l-----a~~v~~~  215 (343)
T 2dq4_A          143 VAAILEPFGNAVHTVYAGSGV-SGKSVLITGAGPIGLMAAMVVRASG-AGPILVSDPNPYRLAFARPY-----ADRLVNP  215 (343)
T ss_dssp             HHTTHHHHHHHHHHHHSTTCC-TTSCEEEECCSHHHHHHHHHHHHTT-CCSEEEECSCHHHHGGGTTT-----CSEEECT
T ss_pred             HHHhhhHHHHHHHHHHHhCCC-CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHh-----HHhccCc
Confidence            11222222222 2344 6678 999999999977 788888888763 23899999999888877552     2211111


Q ss_pred             EEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          165 GVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       165 ~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ...|+.+ .+....+.++|+||...+.+ ..++.+.+.|+++|+++.++
T Consensus       216 ~~~~~~~-~~~~~~~~g~D~vid~~g~~-~~~~~~~~~l~~~G~iv~~g  262 (343)
T 2dq4_A          216 LEEDLLE-VVRRVTGSGVEVLLEFSGNE-AAIHQGLMALIPGGEARILG  262 (343)
T ss_dssp             TTSCHHH-HHHHHHSSCEEEEEECSCCH-HHHHHHHHHEEEEEEEEECC
T ss_pred             CccCHHH-HHHHhcCCCCCEEEECCCCH-HHHHHHHHHHhcCCEEEEEe
Confidence            1111110 01000125799987666543 37899999999999998775

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.10  E-value=1.3e-09  Score=84.59  Aligned_cols=97  Identities=14%  Similarity=0.060  Sum_probs=76.1

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      .++.+|||+|||+|-++..+.    +..+++++|+++.+++.+++++..++. + ..+...|......+    +.+|+|+
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~~g~-~-~~~~v~D~~~~~~~----~~~DvvL  173 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFAREKDW-D-FTFALQDVLCAPPA----EAGDLAL  173 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHHTTC-E-EEEEECCTTTSCCC----CBCSEEE
T ss_pred             CCCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHhcCC-C-ceEEEeecccCCCC----CCcchHH
Confidence            567899999999999997776    468999999999999999999888773 3 78899998854433    6899998


Q ss_pred             EeCCCh------hchHHHHHhcccCCCEEEEEe
Q 026506          187 LDLPQP------WLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       187 ~~~~~~------~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +...-+      ....-++.+.|+++++++.+-
T Consensus       174 llk~lh~LE~q~~~~~~~ll~aL~~~~vvVsfP  206 (253)
T 3frh_A          174 IFKLLPLLEREQAGSAMALLQSLNTPRMAVSFP  206 (253)
T ss_dssp             EESCHHHHHHHSTTHHHHHHHHCBCSEEEEEEE
T ss_pred             HHHHHHHhhhhchhhHHHHHHHhcCCCEEEEcC
Confidence            753211      123348888999998888554

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.10  E-value=2.9e-10  Score=92.14  Aligned_cols=95  Identities=15%  Similarity=0.149  Sum_probs=75.0

Q ss_pred             cccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC
Q 026506           94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG  173 (237)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~  173 (237)
                      |.....++..+.+.++.+|||+|||+|+.+..++...+ ..+|+++|.++.+++.|++++..++  .++++.++|+.+..
T Consensus        12 pvLl~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~   88 (301)
T 1m6y_A           12 PVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREAD   88 (301)
T ss_dssp             CTTHHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHH
Confidence            33344577788888999999999999999999999863 5799999999999999999988777  34999999986521


Q ss_pred             --CCCCCCCCCCEEEEeCCC
Q 026506          174 --FPDEFSGLADSIFLDLPQ  191 (237)
Q Consensus       174 --~~~~~~~~~D~v~~~~~~  191 (237)
                        +.......||.|++|++.
T Consensus        89 ~~l~~~g~~~~D~Vl~D~gv  108 (301)
T 1m6y_A           89 FLLKTLGIEKVDGILMDLGV  108 (301)
T ss_dssp             HHHHHTTCSCEEEEEEECSC
T ss_pred             HHHHhcCCCCCCEEEEcCcc
Confidence              111001469999999874

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.10  E-value=2.3e-10  Score=94.97  Aligned_cols=93  Identities=16%  Similarity=0.212  Sum_probs=74.7

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..++.+|||+|||+|.++..+++.. +..+++++|+ +.+++.+++      ..+ +++..+|+.+ .++     .||+|
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~-v~~~~~d~~~-~~p-----~~D~v  250 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENLSG------SNN-LTYVGGDMFT-SIP-----NADAV  250 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC------BTT-EEEEECCTTT-CCC-----CCSEE
T ss_pred             cccCceEEEeCCCccHHHHHHHHHC-CCCeEEEeeC-HHHHhhccc------CCC-cEEEeccccC-CCC-----CccEE
Confidence            4567899999999999999999885 5578999999 998887764      134 9999999974 343     39999


Q ss_pred             EEe-----CCChh--chHHHHHhcccC---CCEEEEEe
Q 026506          186 FLD-----LPQPW--LAIPSAKKMLKQ---DGILCSFS  213 (237)
Q Consensus       186 ~~~-----~~~~~--~~l~~~~~~L~~---gG~l~~~~  213 (237)
                      ++.     .++..  .+++++.+.|+|   ||++++..
T Consensus       251 ~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e  288 (352)
T 1fp2_A          251 LLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIID  288 (352)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             EeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            864     33444  789999999999   99998774

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.10  E-value=2.9e-10  Score=90.06  Aligned_cols=90  Identities=14%  Similarity=0.164  Sum_probs=71.4

Q ss_pred             cHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCC
Q 026506           96 DISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP  175 (237)
Q Consensus        96 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  175 (237)
                      ....+++.+++.++++|||+|||+|.++..++..   ..+|+++|+++.+++.+++++..  . .++++..+|+.+.+++
T Consensus        17 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avEid~~~~~~~~~~~~~--~-~~v~~i~~D~~~~~~~   90 (255)
T 3tqs_A           17 VLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE---CDNLALVEIDRDLVAFLQKKYNQ--Q-KNITIYQNDALQFDFS   90 (255)
T ss_dssp             HHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT---SSEEEEEECCHHHHHHHHHHHTT--C-TTEEEEESCTTTCCGG
T ss_pred             HHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHhh--C-CCcEEEEcchHhCCHH
Confidence            3345788888999999999999999999998876   27899999999999999998764  2 3499999999875554


Q ss_pred             CCC-CCCCCEEEEeCCCh
Q 026506          176 DEF-SGLADSIFLDLPQP  192 (237)
Q Consensus       176 ~~~-~~~~D~v~~~~~~~  192 (237)
                      ... .+.|| |+.|.|-.
T Consensus        91 ~~~~~~~~~-vv~NlPY~  107 (255)
T 3tqs_A           91 SVKTDKPLR-VVGNLPYN  107 (255)
T ss_dssp             GSCCSSCEE-EEEECCHH
T ss_pred             HhccCCCeE-EEecCCcc
Confidence            321 24577 78888744

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=99.08  E-value=2.9e-11  Score=99.93  Aligned_cols=175  Identities=17%  Similarity=0.170  Sum_probs=106.8

Q ss_pred             CCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc---
Q 026506           13 TRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR---   88 (237)
Q Consensus        13 ~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---   88 (237)
                      ...|++||||++....       ..||.|..|+.|..+.|..... .|.   ...|+|. |...|....  ..++..   
T Consensus        74 v~~~~vGdrV~~~~~~-------~~cg~C~~C~~g~~~~C~~~~~-~g~---~~~G~~aey~~v~~~~~--~~~P~~~~~  140 (339)
T 1rjw_A           74 VTHLKVGDRVGIPWLY-------SACGHCDYCLSGQETLCEHQKN-AGY---SVDGGYAEYCRAAADYV--VKIPDNLSF  140 (339)
T ss_dssp             CCSCCTTCEEEECSEE-------ECCSCSHHHHTTCGGGCTTCEE-BTT---TBCCSSBSEEEEEGGGC--EECCTTSCH
T ss_pred             CCcCCCCCEEEEecCC-------CCCCCCchhhCcCcccCCCcce-eec---CCCCcceeeEEechHHE--EECCCCCCH
Confidence            4679999999974311       1289999999998888863211 111   1123333 333332111  111111   


Q ss_pred             --ccccccc-cHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 026506           89 --TQILYIA-DIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT  163 (237)
Q Consensus        89 --~~~~~~~-~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~  163 (237)
                        +..+... ..+ ..+...++++|++||.+|+|+ |..+.++++..+  .+|++++.+++.++.+++    .|.+..  
T Consensus       141 ~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~----lGa~~~--  212 (339)
T 1rjw_A          141 EEAAPIFCAGVTTYKALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMG--LNVVAVDIGDEKLELAKE----LGADLV--  212 (339)
T ss_dssp             HHHGGGGTHHHHHHHHHHHHTCCTTCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHH----TTCSEE--
T ss_pred             HHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----CCCCEE--
Confidence              1111111 111 244455789999999999987 788888888763  589999999999988865    465321  


Q ss_pred             EEEccccCCCCC----CCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          164 VGVRDIQGQGFP----DEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       164 ~~~~d~~~~~~~----~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                         .|..+..+.    ... +++|+|+...... ..++.+.+.|+++|+++.++
T Consensus       213 ---~d~~~~~~~~~~~~~~-~~~d~vid~~g~~-~~~~~~~~~l~~~G~~v~~g  261 (339)
T 1rjw_A          213 ---VNPLKEDAAKFMKEKV-GGVHAAVVTAVSK-PAFQSAYNSIRRGGACVLVG  261 (339)
T ss_dssp             ---ECTTTSCHHHHHHHHH-SSEEEEEESSCCH-HHHHHHHHHEEEEEEEEECC
T ss_pred             ---ecCCCccHHHHHHHHh-CCCCEEEECCCCH-HHHHHHHHHhhcCCEEEEec
Confidence               132211111    001 4699987666543 37899999999999998765

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.08  E-value=1e-09  Score=87.17  Aligned_cols=120  Identities=15%  Similarity=0.063  Sum_probs=79.9

Q ss_pred             CCCEEEEEccCc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC--CCC-CCCCCC
Q 026506          108 PGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--FPD-EFSGLA  182 (237)
Q Consensus       108 ~~~~vldiG~G~--G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~-~~~~~~  182 (237)
                      ...++||+|||+  +..+..++....+..+|+++|.|+.+++.|++++...+. .++++...|+.+..  +.. .....|
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~-~~~~~v~aD~~~~~~~l~~~~~~~~~  156 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPE-GRTAYVEADMLDPASILDAPELRDTL  156 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSS-SEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCC-CcEEEEEecccChhhhhccccccccc
Confidence            346999999997  445566666655778999999999999999998764332 34999999997521  000 000234


Q ss_pred             C-----EEEEeC-----CC---hhchHHHHHhcccCCCEEEEEeCCH----HHHHHHHHHHHh
Q 026506          183 D-----SIFLDL-----PQ---PWLAIPSAKKMLKQDGILCSFSPCI----EQVQRSCESLRL  228 (237)
Q Consensus       183 D-----~v~~~~-----~~---~~~~l~~~~~~L~~gG~l~~~~~~~----~~~~~~~~~l~~  228 (237)
                      |     .|+++.     ++   +..+++++.+.|+|||+|++...+.    ...+.+.+.++.
T Consensus       157 D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~~  219 (277)
T 3giw_A          157 DLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYAA  219 (277)
T ss_dssp             CTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHHh
Confidence            4     455443     33   3468999999999999998664322    334444444443

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=99.07  E-value=6.6e-11  Score=97.92  Aligned_cols=179  Identities=15%  Similarity=0.114  Sum_probs=107.6

Q ss_pred             cCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc--
Q 026506           12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR--   88 (237)
Q Consensus        12 ~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--   88 (237)
                      ....|++||||.+.+..+        |+.|..|+.|..+.|+.... .|..   ..|++. |...|....  ..++..  
T Consensus        75 ~v~~~~vGdrV~~~~~~~--------cg~c~~C~~g~~~~C~~~~~-~G~~---~~G~~aey~~v~~~~~--~~~P~~~~  140 (343)
T 2eih_A           75 GVEGFAPGDEVVINPGLS--------CGRCERCLAGEDNLCPRYQI-LGEH---RHGTYAEYVVLPEANL--APKPKNLS  140 (343)
T ss_dssp             SCCSCCTTCEEEECCEEC--------CSCSHHHHTTCGGGCTTCEE-TTTS---SCCSSBSEEEEEGGGE--EECCTTSC
T ss_pred             CCCCCCCCCEEEECCCCC--------cccchhhccCcccccccccc-cCcC---CCccceeEEEeChHHe--EECCCCCC
Confidence            346799999999977444        89999999999888863221 1211   123333 333332111  111111  


Q ss_pred             ---cc-ccccccHHH-HHHh-cCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC
Q 026506           89 ---TQ-ILYIADISF-VIMY-LELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS  160 (237)
Q Consensus        89 ---~~-~~~~~~~~~-~~~~-~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~  160 (237)
                         +. +..+...+. .+.. .+++++++||..|+ |. |..+.++++..+  .+|++++.+++.++.+++    .|.+.
T Consensus       141 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G--~~Vi~~~~~~~~~~~~~~----~ga~~  214 (343)
T 2eih_A          141 FEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFG--ARVIATAGSEDKLRRAKA----LGADE  214 (343)
T ss_dssp             HHHHHHSHHHHHHHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH----HTCSE
T ss_pred             HHHHhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHh----cCCCE
Confidence               11 112222221 3333 47889999999998 44 778888888753  589999999999888865    35432


Q ss_pred             cEEEEEccccCCCCCCCC-CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          161 FVTVGVRDIQGQGFPDEF-SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       161 ~i~~~~~d~~~~~~~~~~-~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .++....++.+ .+.... ..++|+++.+..  ...++.+.+.|+++|+++.++
T Consensus       215 ~~d~~~~~~~~-~~~~~~~~~~~d~vi~~~g--~~~~~~~~~~l~~~G~~v~~g  265 (343)
T 2eih_A          215 TVNYTHPDWPK-EVRRLTGGKGADKVVDHTG--ALYFEGVIKATANGGRIAIAG  265 (343)
T ss_dssp             EEETTSTTHHH-HHHHHTTTTCEEEEEESSC--SSSHHHHHHHEEEEEEEEESS
T ss_pred             EEcCCcccHHH-HHHHHhCCCCceEEEECCC--HHHHHHHHHhhccCCEEEEEe
Confidence            11111111110 010001 147999887666  358899999999999998775

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=99.06  E-value=2.6e-10  Score=99.54  Aligned_cols=125  Identities=16%  Similarity=0.072  Sum_probs=93.7

Q ss_pred             ccccccccHH-HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCC--------------CcEEEEEeCCHHHHHHHHHHH
Q 026506           89 TQILYIADIS-FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAP--------------TGHVYTFDFHEQRAASAREDF  153 (237)
Q Consensus        89 ~~~~~~~~~~-~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~--------------~~~v~~vD~~~~~~~~a~~~~  153 (237)
                      .+...|..+. .++..+.+.++ +|+|.+||+|++.+.++..+..              ...++|+|+++.+++.|+.++
T Consensus       225 G~fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl  303 (544)
T 3khk_A          225 GQYYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNM  303 (544)
T ss_dssp             TTTCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHH
T ss_pred             CeEeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHH
Confidence            4455566655 46777777766 9999999999998887654310              358999999999999999999


Q ss_pred             HHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCCh----------------------------------hchHHHH
Q 026506          154 ERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP----------------------------------WLAIPSA  199 (237)
Q Consensus       154 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~----------------------------------~~~l~~~  199 (237)
                      ..+++...+.+..+|....+...  ...||+|+.|+|-.                                  ..+++.+
T Consensus       304 ~l~gi~~~i~i~~gDtL~~~~~~--~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~  381 (544)
T 3khk_A          304 VIRGIDFNFGKKNADSFLDDQHP--DLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHM  381 (544)
T ss_dssp             HHTTCCCBCCSSSCCTTTSCSCT--TCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHH
T ss_pred             HHhCCCcccceeccchhcCcccc--cccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHH
Confidence            88887654555778876432211  26899999988721                                  0357889


Q ss_pred             HhcccCCCEEEEEeCCH
Q 026506          200 KKMLKQDGILCSFSPCI  216 (237)
Q Consensus       200 ~~~L~~gG~l~~~~~~~  216 (237)
                      .+.|+|||+++++.|..
T Consensus       382 l~~Lk~gGr~aiVlP~g  398 (544)
T 3khk_A          382 LYHLAPTGSMALLLANG  398 (544)
T ss_dssp             HHTEEEEEEEEEEEETH
T ss_pred             HHHhccCceEEEEecch
Confidence            99999999999998865

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.06  E-value=2.3e-10  Score=95.23  Aligned_cols=93  Identities=17%  Similarity=0.238  Sum_probs=73.8

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..++.+|||+|||+|.++..+++.. +..+++++|+ +.+++.+++      ..+ +++..+|+.+ .++     .||+|
T Consensus       191 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~-v~~~~~d~~~-~~~-----~~D~v  255 (358)
T 1zg3_A          191 FEGLESLVDVGGGTGGVTKLIHEIF-PHLKCTVFDQ-PQVVGNLTG------NEN-LNFVGGDMFK-SIP-----SADAV  255 (358)
T ss_dssp             HHTCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEEC-HHHHSSCCC------CSS-EEEEECCTTT-CCC-----CCSEE
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEecc-HHHHhhccc------CCC-cEEEeCccCC-CCC-----CceEE
Confidence            4567899999999999999999885 5578999999 787776653      234 9999999974 333     49999


Q ss_pred             EEe-----CCChh--chHHHHHhcccC---CCEEEEEe
Q 026506          186 FLD-----LPQPW--LAIPSAKKMLKQ---DGILCSFS  213 (237)
Q Consensus       186 ~~~-----~~~~~--~~l~~~~~~L~~---gG~l~~~~  213 (237)
                      ++.     .+++.  .+++++.+.|+|   ||++++..
T Consensus       256 ~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e  293 (358)
T 1zg3_A          256 LLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIID  293 (358)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred             EEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            874     33433  789999999999   99998764

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=99.05  E-value=2.7e-10  Score=94.86  Aligned_cols=178  Identities=16%  Similarity=0.167  Sum_probs=106.9

Q ss_pred             cCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCC---
Q 026506           12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSH---   87 (237)
Q Consensus        12 ~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~---   87 (237)
                      ....|++||||+.....+        ||.|..|+.|..+.|.... ..|.   ...|+|. |...|....+  .++.   
T Consensus        91 ~v~~~~vGdrV~~~~~~~--------Cg~C~~C~~g~~~~C~~~~-~~G~---~~~G~~aey~~v~~~~~~--~iP~~~~  156 (359)
T 1h2b_A           91 GVEGLEKGDPVILHPAVT--------DGTCLACRAGEDMHCENLE-FPGL---NIDGGFAEFMRTSHRSVI--KLPKDIS  156 (359)
T ss_dssp             TCCSCCTTCEEEECSCBC--------CSCSHHHHTTCGGGCTTCB-CBTT---TBCCSSBSEEEECGGGEE--ECCTTCC
T ss_pred             CCCCCCCCCEEEeCCCCC--------CCCChhhhCcCcccCCCcc-cccc---CCCCcccceEEechHhEE--ECCCCCC
Confidence            346799999997766555        9999999999988886321 1121   1224443 3343322111  1111   


Q ss_pred             --ccccccccc----HH-HHHHh--cCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q 026506           88 --RTQILYIAD----IS-FVIMY--LELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG  157 (237)
Q Consensus        88 --~~~~~~~~~----~~-~~~~~--~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~  157 (237)
                        .+..+.+..    .+ ..+..  .++++|++||.+|+|+ |.++.++++..++ .+|+++|.+++.++.+++    +|
T Consensus       157 ~~~aa~~~~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~G-a~Vi~~~~~~~~~~~~~~----lG  231 (359)
T 1h2b_A          157 REKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTP-ATVIALDVKEEKLKLAER----LG  231 (359)
T ss_dssp             HHHHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCC-CEEEEEESSHHHHHHHHH----TT
T ss_pred             HHHHhhccchhhhHHHHHHHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH----hC
Confidence              111001111    11 23444  7889999999999987 7888888888622 479999999999998875    56


Q ss_pred             CCCcEEEEEccccCCCCCCCC-CCCCCEEEEeCCChhc--hHHHHHhcccCCCEEEEEe
Q 026506          158 VSSFVTVGVRDIQGQGFPDEF-SGLADSIFLDLPQPWL--AIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       158 ~~~~i~~~~~d~~~~~~~~~~-~~~~D~v~~~~~~~~~--~l~~~~~~L~~gG~l~~~~  213 (237)
                      .+..++.... +.+ ...... +.++|+||.....+ .  .++.+.+.  ++|+++.++
T Consensus       232 a~~vi~~~~~-~~~-~v~~~~~g~g~Dvvid~~G~~-~~~~~~~~~~~--~~G~~v~~g  285 (359)
T 1h2b_A          232 ADHVVDARRD-PVK-QVMELTRGRGVNVAMDFVGSQ-ATVDYTPYLLG--RMGRLIIVG  285 (359)
T ss_dssp             CSEEEETTSC-HHH-HHHHHTTTCCEEEEEESSCCH-HHHHHGGGGEE--EEEEEEECC
T ss_pred             CCEEEeccch-HHH-HHHHHhCCCCCcEEEECCCCc-hHHHHHHHhhc--CCCEEEEEe
Confidence            5432221111 000 010111 13799987665543 3  56777777  999998775

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.04  E-value=5.3e-10  Score=93.51  Aligned_cols=98  Identities=17%  Similarity=0.208  Sum_probs=77.5

Q ss_pred             HHHhcC-CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          100 VIMYLE-LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       100 ~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      ++..+. ..++.+|||+|||+|.++..+++.. +..+++++|+ +.+++.+++      ..+ +++..+|+.+ .++   
T Consensus       200 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~------~~~-v~~~~~d~~~-~~~---  266 (372)
T 1fp1_D          200 MLEIYTGFEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENAPP------LSG-IEHVGGDMFA-SVP---  266 (372)
T ss_dssp             HHHHCCTTTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC------CTT-EEEEECCTTT-CCC---
T ss_pred             HHHHhhccCCCCEEEEeCCCCcHHHHHHHHHC-CCCeEEEeCh-HHHHHhhhh------cCC-CEEEeCCccc-CCC---
Confidence            445554 6678899999999999999999885 5678999999 888887654      233 9999999974 443   


Q ss_pred             CCCCCEEEEeC-----CChh--chHHHHHhcccCCCEEEEE
Q 026506          179 SGLADSIFLDL-----PQPW--LAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       179 ~~~~D~v~~~~-----~~~~--~~l~~~~~~L~~gG~l~~~  212 (237)
                       . ||+|++..     +++.  .+++++.+.|+|||++++.
T Consensus       267 -~-~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~  305 (372)
T 1fp1_D          267 -Q-GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIV  305 (372)
T ss_dssp             -C-EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -C-CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence             3 89998643     3443  7899999999999999876

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.02  E-value=1.5e-11  Score=97.12  Aligned_cols=109  Identities=25%  Similarity=0.232  Sum_probs=82.2

Q ss_pred             cccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC
Q 026506           94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG  173 (237)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~  173 (237)
                      +.....+++.+.+.++++|||+|||+|.++..++...   .+++++|+++.+++.+++++.  . ..++++..+|+.+..
T Consensus        15 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~--~-~~~v~~~~~D~~~~~   88 (245)
T 1yub_A           15 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLK--L-NTRVTLIHQDILQFQ   88 (245)
T ss_dssp             TTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTT--T-CSEEEECCSCCTTTT
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhc--c-CCceEEEECChhhcC
Confidence            3444557888888899999999999999999998872   789999999999999887654  2 234899999998644


Q ss_pred             CCCCCCCCCCEEEEeCCCh----------------hchH----HHHHhcccCCCEEEE
Q 026506          174 FPDEFSGLADSIFLDLPQP----------------WLAI----PSAKKMLKQDGILCS  211 (237)
Q Consensus       174 ~~~~~~~~~D~v~~~~~~~----------------~~~l----~~~~~~L~~gG~l~~  211 (237)
                      ++.  .+.| .|+.|+|-.                ...+    +.+.+.|+|||.+.+
T Consensus        89 ~~~--~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v  143 (245)
T 1yub_A           89 FPN--KQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGL  143 (245)
T ss_dssp             CCC--SSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHH
T ss_pred             ccc--CCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhh
Confidence            432  1457 677776521                2344    778899999998763

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=99.01  E-value=4.6e-10  Score=93.37  Aligned_cols=182  Identities=16%  Similarity=0.132  Sum_probs=106.3

Q ss_pred             cCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceE---EeccCcEE-EEECCCHHHHhhhcCC
Q 026506           12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMV---FSNKGGFV-YLLAPTPELWTLVLSH   87 (237)
Q Consensus        12 ~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~---~~~~~~~~-~~~~~~~~~~~~~~~~   87 (237)
                      -...|++||||.+...       ...||.|..|+.|..+.|+.....++...   ....|+|. |...|....  ..++.
T Consensus        81 ~v~~~~vGdrV~~~~~-------~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~--~~~P~  151 (357)
T 2cf5_A           81 DVSKFTVGDIVGVGCL-------VGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQPTQGGFAKATVVHQKFV--VKIPE  151 (357)
T ss_dssp             SCCSCCTTCEEEECSE-------EECCSSSHHHHTTCGGGCTTCEETTTSBCTTSCBCCCSSBSCEEEEGGGE--EECCS
T ss_pred             CCCCCCCCCEEEEcCC-------CCCCCCChHHhCcCcccCCCccccccccccCCCCCCCccccEEEechhhE--EECcC
Confidence            3467999999987431       11299999999998888753211110000   00123333 333332111  11111


Q ss_pred             c-----ccccc-cccHH-HHHHhcCCC-CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q 026506           88 R-----TQILY-IADIS-FVIMYLELV-PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV  158 (237)
Q Consensus        88 ~-----~~~~~-~~~~~-~~~~~~~~~-~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~  158 (237)
                      .     +..+. ....+ ..+...++. +|++||.+|+|+ |.++.++++..+  .+|++++.+++.++.+++   ..|.
T Consensus       152 ~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~G--a~Vi~~~~~~~~~~~~~~---~lGa  226 (357)
T 2cf5_A          152 GMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAKAMG--HHVTVISSSNKKREEALQ---DLGA  226 (357)
T ss_dssp             SCCHHHHTGGGTHHHHHHHHHHHTSTTSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSTTHHHHHHT---TSCC
T ss_pred             CCCHHHhhhhhhhHHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHH---HcCC
Confidence            1     11111 11111 234456777 999999999988 888888888874  489999999988887763   2565


Q ss_pred             CCcEEEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          159 SSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       159 ~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +..++....+.    +.... +++|+|+...+.+ ..++.+.+.|+++|+++.++
T Consensus       227 ~~vi~~~~~~~----~~~~~-~g~D~vid~~g~~-~~~~~~~~~l~~~G~iv~~G  275 (357)
T 2cf5_A          227 DDYVIGSDQAK----MSELA-DSLDYVIDTVPVH-HALEPYLSLLKLDGKLILMG  275 (357)
T ss_dssp             SCEEETTCHHH----HHHST-TTEEEEEECCCSC-CCSHHHHTTEEEEEEEEECS
T ss_pred             ceeeccccHHH----HHHhc-CCCCEEEECCCCh-HHHHHHHHHhccCCEEEEeC
Confidence            54222111111    11111 4699987665533 36788999999999999775

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.01  E-value=8.2e-10  Score=88.12  Aligned_cols=87  Identities=18%  Similarity=0.182  Sum_probs=71.0

Q ss_pred             cHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCC
Q 026506           96 DISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP  175 (237)
Q Consensus        96 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  175 (237)
                      .+..+++.+++.++ +|||+|||+|.++..++...   .+|+++|+++++++.+++++..    .++++..+|+.+.+++
T Consensus        35 i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~---~~V~avEid~~~~~~l~~~~~~----~~v~vi~~D~l~~~~~  106 (271)
T 3fut_A           35 HLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAG---AEVTAIEKDLRLRPVLEETLSG----LPVRLVFQDALLYPWE  106 (271)
T ss_dssp             HHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT---CCEEEEESCGGGHHHHHHHTTT----SSEEEEESCGGGSCGG
T ss_pred             HHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcCC----CCEEEEECChhhCChh
Confidence            34457888888899 99999999999999998872   6899999999999999998642    3499999999875554


Q ss_pred             CCCCCCCCEEEEeCCCh
Q 026506          176 DEFSGLADSIFLDLPQP  192 (237)
Q Consensus       176 ~~~~~~~D~v~~~~~~~  192 (237)
                      ..  ..+|.|+.|.|-.
T Consensus       107 ~~--~~~~~iv~NlPy~  121 (271)
T 3fut_A          107 EV--PQGSLLVANLPYH  121 (271)
T ss_dssp             GS--CTTEEEEEEECSS
T ss_pred             hc--cCccEEEecCccc
Confidence            31  3689999998754

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=98.98  E-value=3.8e-10  Score=94.20  Aligned_cols=184  Identities=18%  Similarity=0.155  Sum_probs=106.2

Q ss_pred             cCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCce---EEeccCcEE-EEECCCHHHHhh--hc
Q 026506           12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSM---VFSNKGGFV-YLLAPTPELWTL--VL   85 (237)
Q Consensus        12 ~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~---~~~~~~~~~-~~~~~~~~~~~~--~~   85 (237)
                      -...|++||||.+...       ...||.|..|+.|..+.|+.....++..   -....|+|. |...|....+..  .+
T Consensus        88 ~V~~~~vGDrV~~~~~-------~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~l  160 (366)
T 1yqd_A           88 KVKKVNVGDKVGVGCL-------VGACHSCESCANDLENYCPKMILTYASIYHDGTITYGGYSNHMVANERYIIRFPDNM  160 (366)
T ss_dssp             TCCSCCTTCEEEECSE-------EECCSSSHHHHTTCGGGCTTCEESSSSBCTTSCBCCCSSBSEEEEEGGGCEECCTTS
T ss_pred             CCCcCCCCCEEEEcCC-------cCCCCCChhhhCcCcccCCcccccccccccCCCcCCCccccEEEEchhhEEECCCCC
Confidence            3467999999987431       1139999999999888885321111000   001234444 444432221110  11


Q ss_pred             C-Ccccccc-cccHH-HHHHhcCCC-CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC
Q 026506           86 S-HRTQILY-IADIS-FVIMYLELV-PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS  160 (237)
Q Consensus        86 ~-~~~~~~~-~~~~~-~~~~~~~~~-~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~  160 (237)
                      + ..+..+. ....+ ..+...++. +|++||.+|+|. |..+.++++..+  .+|++++.+++.++.+++.   .|.+.
T Consensus       161 s~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~~---lGa~~  235 (366)
T 1yqd_A          161 PLDGGAPLLCAGITVYSPLKYFGLDEPGKHIGIVGLGGLGHVAVKFAKAFG--SKVTVISTSPSKKEEALKN---FGADS  235 (366)
T ss_dssp             CTTTTGGGGTHHHHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCGGGHHHHHHT---SCCSE
T ss_pred             CHHHhhhhhhhHHHHHHHHHhcCcCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHh---cCCce
Confidence            1 1111111 11111 234456777 999999999988 778888888763  5899999999888777632   46443


Q ss_pred             cEEEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          161 FVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       161 ~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .++.  .+.  ..+.... +++|+|+...+... .++.+.+.|+++|+++.++
T Consensus       236 v~~~--~~~--~~~~~~~-~~~D~vid~~g~~~-~~~~~~~~l~~~G~iv~~g  282 (366)
T 1yqd_A          236 FLVS--RDQ--EQMQAAA-GTLDGIIDTVSAVH-PLLPLFGLLKSHGKLILVG  282 (366)
T ss_dssp             EEET--TCH--HHHHHTT-TCEEEEEECCSSCC-CSHHHHHHEEEEEEEEECC
T ss_pred             EEec--cCH--HHHHHhh-CCCCEEEECCCcHH-HHHHHHHHHhcCCEEEEEc
Confidence            1211  111  0011111 46999886655432 5788899999999998765

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=98.97  E-value=2.7e-10  Score=94.35  Aligned_cols=180  Identities=18%  Similarity=0.129  Sum_probs=104.9

Q ss_pred             cCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhh--hcCC-
Q 026506           12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTL--VLSH-   87 (237)
Q Consensus        12 ~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~--~~~~-   87 (237)
                      ....|++||||.+....       ..||.|..|+.|..+.|..... .|.   ...|+|. |...|....+..  .++. 
T Consensus        78 ~v~~~~~GdrV~~~~~~-------~~cg~C~~C~~g~~~~C~~~~~-~g~---~~~G~~aey~~v~~~~~~~iP~~~~~~  146 (347)
T 2hcy_A           78 NVKGWKIGDYAGIKWLN-------GSCMACEYCELGNESNCPHADL-SGY---THDGSFQQYATADAVQAAHIPQGTDLA  146 (347)
T ss_dssp             TCCSCCTTCEEEECSEE-------ECCSSSTTTTTTCGGGCTTCEE-BTT---TBCCSSBSEEEEETTTSEEECTTCCHH
T ss_pred             CCCCCcCCCEEEEecCC-------CCCCCChhhhCCCcccCccccc-ccc---CCCCcceeEEEeccccEEECCCCCCHH
Confidence            34679999999974311       1289999999998888763210 111   1123333 333332211110  0110 


Q ss_pred             cccccccc-cHH-HHHHhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 026506           88 RTQILYIA-DIS-FVIMYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT  163 (237)
Q Consensus        88 ~~~~~~~~-~~~-~~~~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~  163 (237)
                      .+..+... ..+ ..+...+++++++||.+|+ |. |..+..+++..+  .+|++++.+++.++.+++    .+.+.  .
T Consensus       147 ~aa~l~~~~~ta~~~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G--a~V~~~~~~~~~~~~~~~----~g~~~--~  218 (347)
T 2hcy_A          147 QVAPILCAGITVYKALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMG--YRVLGIDGGEGKEELFRS----IGGEV--F  218 (347)
T ss_dssp             HHGGGGTHHHHHHHHHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECSTTHHHHHHH----TTCCE--E
T ss_pred             HHHHHhhhHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCC--CcEEEEcCCHHHHHHHHH----cCCce--E
Confidence            11111111 111 2445567889999999998 33 777777777653  589999999888877765    45432  1


Q ss_pred             EEEccccC-CCCC----CCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          164 VGVRDIQG-QGFP----DEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       164 ~~~~d~~~-~~~~----~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                         .|..+ ..+.    ....+++|+++.+.... ..++.+.+.|+++|+++.++.
T Consensus       219 ---~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~~-~~~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          219 ---IDFTKEKDIVGAVLKATDGGAHGVINVSVSE-AAIEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             ---EETTTCSCHHHHHHHHHTSCEEEEEECSSCH-HHHHHHTTSEEEEEEEEECCC
T ss_pred             ---EecCccHhHHHHHHHHhCCCCCEEEECCCcH-HHHHHHHHHHhcCCEEEEEeC
Confidence               13221 1111    10113699988776543 378999999999999987753

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.96  E-value=1.8e-10  Score=86.05  Aligned_cols=104  Identities=14%  Similarity=0.114  Sum_probs=78.9

Q ss_pred             HhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCC---CCCC
Q 026506          102 MYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF---PDEF  178 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~  178 (237)
                      ..+++.+|++|||+|||.                 +.+|+++.+++.|+++...    + +++..+|+.+..+   +.  
T Consensus         6 ~~~g~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~~----~-~~~~~~d~~~~~~~~~~~--   61 (176)
T 2ld4_A            6 ADFGISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTGN----E-GRVSVENIKQLLQSAHKE--   61 (176)
T ss_dssp             TTTTCCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTTT----T-SEEEEEEGGGGGGGCCCS--
T ss_pred             hccCCCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhccc----C-cEEEEechhcCccccCCC--
Confidence            345678999999999985                 1289999999999987421    2 7888889876444   33  


Q ss_pred             CCCCCEEEEe-----C-CChhchHHHHHhcccCCCEEEEEeCCHH---------HHHHHHHHHHh-cC
Q 026506          179 SGLADSIFLD-----L-PQPWLAIPSAKKMLKQDGILCSFSPCIE---------QVQRSCESLRL-NF  230 (237)
Q Consensus       179 ~~~~D~v~~~-----~-~~~~~~l~~~~~~L~~gG~l~~~~~~~~---------~~~~~~~~l~~-~f  230 (237)
                       +.||+|+..     . ++...+++++.+.|||||++++..+...         ...++.+.+++ ||
T Consensus        62 -~~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  128 (176)
T 2ld4_A           62 -SSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL  128 (176)
T ss_dssp             -SCEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred             -CCEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence             789999873     2 4556789999999999999998654321         25677788887 78

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.95  E-value=3.8e-09  Score=84.71  Aligned_cols=91  Identities=18%  Similarity=0.240  Sum_probs=69.4

Q ss_pred             HHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCC
Q 026506           97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAP-TGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP  175 (237)
Q Consensus        97 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  175 (237)
                      ...+++.+++.++++|||+|||+|.++..++..... ..+|+++|+++.+++.++++.     ..+++++.+|+.+.+++
T Consensus        31 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~~~~~  105 (279)
T 3uzu_A           31 IDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALTFDFG  105 (279)
T ss_dssp             HHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGGCCGG
T ss_pred             HHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhcCChh
Confidence            334778888899999999999999999999988522 244999999999999999983     23499999999875554


Q ss_pred             CCCC-C--CCCEEEEeCCCh
Q 026506          176 DEFS-G--LADSIFLDLPQP  192 (237)
Q Consensus       176 ~~~~-~--~~D~v~~~~~~~  192 (237)
                      .... .  ..+.|+.|.|-.
T Consensus       106 ~~~~~~~~~~~~vv~NlPY~  125 (279)
T 3uzu_A          106 SIARPGDEPSLRIIGNLPYN  125 (279)
T ss_dssp             GGSCSSSSCCEEEEEECCHH
T ss_pred             HhcccccCCceEEEEccCcc
Confidence            3211 1  345678888743

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.93  E-value=1.4e-09  Score=86.14  Aligned_cols=121  Identities=21%  Similarity=0.175  Sum_probs=82.1

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHh------CCC-----cEEEEEeCCH---HH-----------HHHHHHHHHHcC---
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAV------APT-----GHVYTFDFHE---QR-----------AASAREDFERTG---  157 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~------~~~-----~~v~~vD~~~---~~-----------~~~a~~~~~~~~---  157 (237)
                      .+++.+|||+|+|+|..++.+++..      .+.     .+++++|..|   +.           .+.+++.++...   
T Consensus        58 ~~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~  137 (257)
T 2qy6_A           58 PHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPL  137 (257)
T ss_dssp             SSSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSC
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccc
Confidence            3456799999999999988876654      453     4899999876   33           335666655310   


Q ss_pred             -------CC---CcEEEEEccccCCCCCCCC---CCCCCEEEEeCCC--------hhchHHHHHhcccCCCEEEEEeCCH
Q 026506          158 -------VS---SFVTVGVRDIQGQGFPDEF---SGLADSIFLDLPQ--------PWLAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       158 -------~~---~~i~~~~~d~~~~~~~~~~---~~~~D~v~~~~~~--------~~~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                             ..   .++++..+|+.+ .++...   ...||+||+|+-.        ..++++.+.+.|+|||+++.|+...
T Consensus       138 ~g~~r~~~~~~~~~l~l~~GDa~~-~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysaa~  216 (257)
T 2qy6_A          138 PGCHRLLLDEGRVTLDLWFGDINE-LISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTSAG  216 (257)
T ss_dssp             SEEEEEEEC--CEEEEEEESCHHH-HGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCCBH
T ss_pred             cchhheeccCCceEEEEEECcHHH-HHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEeCCH
Confidence                   11   237788899875 222211   1279999998632        2358999999999999999888643


Q ss_pred             HHHHHHHHHHHh-cCc
Q 026506          217 EQVQRSCESLRL-NFT  231 (237)
Q Consensus       217 ~~~~~~~~~l~~-~f~  231 (237)
                          .+.+.|++ ||.
T Consensus       217 ----~vrr~L~~aGF~  228 (257)
T 2qy6_A          217 ----FVRRGLQEAGFT  228 (257)
T ss_dssp             ----HHHHHHHHHTEE
T ss_pred             ----HHHHHHHHCCCE
Confidence                34455565 675

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.93  E-value=1.2e-09  Score=96.20  Aligned_cols=100  Identities=16%  Similarity=0.095  Sum_probs=76.1

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC--CCCCCCCCCCCEE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDEFSGLADSI  185 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~~D~v  185 (237)
                      .+.+|||+|||+|.++..+++.   +..|+|+|.++.+++.|+.++...+..+ +++..+++.+.  ....   +.||+|
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~---ga~V~giD~~~~~i~~a~~~a~~~~~~~-~~~~~~~~~~~~~~~~~---~~fD~v  138 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASK---GATIVGIDFQQENINVCRALAEENPDFA-AEFRVGRIEEVIAALEE---GEFDLA  138 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTSTTSE-EEEEECCHHHHHHHCCT---TSCSEE
T ss_pred             CCCeEEEECCCCcHHHHHHHhC---CCEEEEECCCHHHHHHHHHHHHhcCCCc-eEEEECCHHHHhhhccC---CCccEE
Confidence            4579999999999999999886   3689999999999999999988777545 99999998752  2233   689998


Q ss_pred             EEe-----CCChh--chHHHHHhcccCCCEEEEEeC
Q 026506          186 FLD-----LPQPW--LAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       186 ~~~-----~~~~~--~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ++.     .+++.  ..+..+.+.|+++|..+++..
T Consensus       139 ~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~  174 (569)
T 4azs_A          139 IGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILEL  174 (569)
T ss_dssp             EEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEEC
T ss_pred             EECcchhcCCCHHHHHHHHHHHHHhccccceeeEEe
Confidence            753     22222  234556777888887776654

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.91  E-value=8e-09  Score=81.51  Aligned_cols=97  Identities=21%  Similarity=0.222  Sum_probs=72.0

Q ss_pred             HHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC
Q 026506           97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD  176 (237)
Q Consensus        97 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  176 (237)
                      ...+++.+.+.++++|||+|||+|.++..++..  +..+++++|+++.+++.++++    .. .++++..+|+.+.+++.
T Consensus        20 ~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~--~~~~v~avEid~~~~~~~~~~----~~-~~v~~i~~D~~~~~~~~   92 (249)
T 3ftd_A           20 LKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH--PLKKLYVIELDREMVENLKSI----GD-ERLEVINEDASKFPFCS   92 (249)
T ss_dssp             HHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS--CCSEEEEECCCHHHHHHHTTS----CC-TTEEEECSCTTTCCGGG
T ss_pred             HHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc--CCCeEEEEECCHHHHHHHHhc----cC-CCeEEEEcchhhCChhH
Confidence            345778888889999999999999999988876  347999999999999999886    22 34999999998755554


Q ss_pred             CCCCCCCEEEEeCCChh--chHHHHHhc
Q 026506          177 EFSGLADSIFLDLPQPW--LAIPSAKKM  202 (237)
Q Consensus       177 ~~~~~~D~v~~~~~~~~--~~l~~~~~~  202 (237)
                      .. + ...|+.|.|-..  ..+..+.+.
T Consensus        93 ~~-~-~~~vv~NlPy~i~~~il~~ll~~  118 (249)
T 3ftd_A           93 LG-K-ELKVVGNLPYNVASLIIENTVYN  118 (249)
T ss_dssp             SC-S-SEEEEEECCTTTHHHHHHHHHHT
T ss_pred             cc-C-CcEEEEECchhccHHHHHHHHhc
Confidence            21 1 336778887543  234444433

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.91  E-value=9.4e-10  Score=92.39  Aligned_cols=79  Identities=18%  Similarity=0.139  Sum_probs=64.2

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--CCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT--GVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      .+|.+|||+|||+|..+..++..   ..+|+++|+++.+++.|++|++.+  ++. ++++..+|+.+. ++......||+
T Consensus        92 ~~g~~VLDLgcG~G~~al~LA~~---g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~-~i~~i~~Da~~~-L~~~~~~~fDv  166 (410)
T 3ll7_A           92 REGTKVVDLTGGLGIDFIALMSK---ASQGIYIERNDETAVAARHNIPLLLNEGK-DVNILTGDFKEY-LPLIKTFHPDY  166 (410)
T ss_dssp             CTTCEEEESSCSSSHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHHSCTTC-EEEEEESCGGGS-HHHHHHHCCSE
T ss_pred             CCCCEEEEeCCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHhHHHhccCCC-cEEEEECcHHHh-hhhccCCCceE
Confidence            35899999999999999887765   369999999999999999999988  774 499999999751 11100147999


Q ss_pred             EEEeCC
Q 026506          185 IFLDLP  190 (237)
Q Consensus       185 v~~~~~  190 (237)
                      |++|+|
T Consensus       167 V~lDPP  172 (410)
T 3ll7_A          167 IYVDPA  172 (410)
T ss_dssp             EEECCE
T ss_pred             EEECCC
Confidence            999986

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.89  E-value=3.9e-10  Score=89.51  Aligned_cols=87  Identities=18%  Similarity=0.168  Sum_probs=67.3

Q ss_pred             HHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCH-------HHHHHHHHHHHHcCCCCcEEEEEccccCCC
Q 026506          101 IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHE-------QRAASAREDFERTGVSSFVTVGVRDIQGQG  173 (237)
Q Consensus       101 ~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~-------~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~  173 (237)
                      ...+...++.+|||+|||+|..++.++..   ..+|+++|+++       ++++.|+++.+.+++.+++++..+|+.+. 
T Consensus        76 ~~a~~~~~~~~VLDlgcG~G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~-  151 (258)
T 2r6z_A           76 AKAVNHTAHPTVWDATAGLGRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQ-  151 (258)
T ss_dssp             HHHTTGGGCCCEEETTCTTCHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHH-
T ss_pred             HHHhCcCCcCeEEEeeCccCHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHH-
Confidence            33445567789999999999999998885   36899999999       99999999888777656699999998741 


Q ss_pred             CCCCCC--CCCCEEEEeCCC
Q 026506          174 FPDEFS--GLADSIFLDLPQ  191 (237)
Q Consensus       174 ~~~~~~--~~~D~v~~~~~~  191 (237)
                      ++....  +.||+|++|++-
T Consensus       152 l~~~~~~~~~fD~V~~dP~~  171 (258)
T 2r6z_A          152 MPALVKTQGKPDIVYLDPMY  171 (258)
T ss_dssp             HHHHHHHHCCCSEEEECCCC
T ss_pred             HHhhhccCCCccEEEECCCC
Confidence            111001  469999998753

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.88  E-value=7.4e-09  Score=91.25  Aligned_cols=98  Identities=23%  Similarity=0.258  Sum_probs=74.5

Q ss_pred             CCCEEEEEccCccHHHHHH---HHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          108 PGCLVLESGTGSGSLTTSL---ARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~---~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      .+..|+|+|||+|-+....   ++..+...+|+++|-|+ +...+++....+++.++|+++.+|+++..+|    .++|+
T Consensus       357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP----EKVDI  431 (637)
T 4gqb_A          357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAP----EKADI  431 (637)
T ss_dssp             CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCS----SCEEE
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCC----cccCE
Confidence            3458999999999985443   33322223789999997 5667888888899999999999999875555    57999


Q ss_pred             EEEeCCCh-------hchHHHHHhcccCCCEEE
Q 026506          185 IFLDLPQP-------WLAIPSAKKMLKQDGILC  210 (237)
Q Consensus       185 v~~~~~~~-------~~~l~~~~~~L~~gG~l~  210 (237)
                      |+...-+.       .+.+....+.|||||+++
T Consensus       432 IVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          432 IVSELLGSFADNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             EECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence            99754322       246777789999999986

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=98.86  E-value=1.4e-09  Score=90.72  Aligned_cols=103  Identities=17%  Similarity=0.099  Sum_probs=73.1

Q ss_pred             HhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-ccccCCCCCC-CC
Q 026506          102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV-RDIQGQGFPD-EF  178 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~-~~  178 (237)
                      ...++++|++||.+|+|+ |..+.++++..+  .+|++++.+++.++.+++    .|.+..++ .. .|+.+ .+.. ..
T Consensus       183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~----lGa~~vi~-~~~~~~~~-~v~~~~~  254 (363)
T 3uog_A          183 EKGHLRAGDRVVVQGTGGVALFGLQIAKATG--AEVIVTSSSREKLDRAFA----LGADHGIN-RLEEDWVE-RVYALTG  254 (363)
T ss_dssp             TTTCCCTTCEEEEESSBHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH----HTCSEEEE-TTTSCHHH-HHHHHHT
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEecCchhHHHHHH----cCCCEEEc-CCcccHHH-HHHHHhC
Confidence            456789999999999988 888888888863  589999999999998876    46543222 10 11111 0100 11


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +.++|+|+....  ...++.+.+.|+++|++++++.
T Consensus       255 g~g~D~vid~~g--~~~~~~~~~~l~~~G~iv~~G~  288 (363)
T 3uog_A          255 DRGADHILEIAG--GAGLGQSLKAVAPDGRISVIGV  288 (363)
T ss_dssp             TCCEEEEEEETT--SSCHHHHHHHEEEEEEEEEECC
T ss_pred             CCCceEEEECCC--hHHHHHHHHHhhcCCEEEEEec
Confidence            137999887766  3478999999999999997753

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.84  E-value=8.7e-09  Score=92.27  Aligned_cols=126  Identities=10%  Similarity=0.114  Sum_probs=85.1

Q ss_pred             ccccccccHHH-HHHh----c--CCCCCCEEEEEccCccHHHHHHHHHhC--CCcEEEEEeCCHHHHHHH--HHHHHH--
Q 026506           89 TQILYIADISF-VIMY----L--ELVPGCLVLESGTGSGSLTTSLARAVA--PTGHVYTFDFHEQRAASA--REDFER--  155 (237)
Q Consensus        89 ~~~~~~~~~~~-~~~~----~--~~~~~~~vldiG~G~G~~~~~~~~~~~--~~~~v~~vD~~~~~~~~a--~~~~~~--  155 (237)
                      .+...|..++. ++..    +  ...++.+|+|.|||+|.++..++..++  ...+++|+|+++.+++.|  +.++..  
T Consensus       295 GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~  374 (878)
T 3s1s_A          295 GVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQ  374 (878)
T ss_dssp             BSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTT
T ss_pred             ceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhh
Confidence            33444555553 3333    2  234688999999999999999888763  135799999999999999  554433  


Q ss_pred             --cCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCCh----------------------------------hchHHHH
Q 026506          156 --TGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP----------------------------------WLAIPSA  199 (237)
Q Consensus       156 --~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~----------------------------------~~~l~~~  199 (237)
                        .+... ..+...|+......  ..+.||+|+.|+|--                                  ..+++.+
T Consensus       375 LlhGi~~-~~I~~dD~L~~~~~--~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~A  451 (878)
T 3s1s_A          375 LVSSNNA-PTITGEDVCSLNPE--DFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELV  451 (878)
T ss_dssp             TCBTTBC-CEEECCCGGGCCGG--GGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHH
T ss_pred             hhcCCCc-ceEEecchhccccc--ccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHH
Confidence              23222 34555566531111  126799999998730                                  1246778


Q ss_pred             HhcccCCCEEEEEeCCHH
Q 026506          200 KKMLKQDGILCSFSPCIE  217 (237)
Q Consensus       200 ~~~L~~gG~l~~~~~~~~  217 (237)
                      .+.|++||+++++.|..-
T Consensus       452 l~lLKpGGrLAfIlP~s~  469 (878)
T 3s1s_A          452 TELVQDGTVISAIMPKQY  469 (878)
T ss_dssp             HHHSCTTCEEEEEEETHH
T ss_pred             HHhcCCCcEEEEEEChHH
Confidence            999999999999998763

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.82  E-value=4.7e-09  Score=82.68  Aligned_cols=130  Identities=14%  Similarity=0.093  Sum_probs=84.2

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      +.+...++++.+|||+|||+|+++..++... +...+.++|+..++....... ...+. + +.....++....++.   
T Consensus        66 i~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~-~~~~v~g~dVGvDl~~~pi~~-~~~g~-~-ii~~~~~~dv~~l~~---  138 (277)
T 3evf_A           66 FHERGYVKLEGRVIDLGCGRGGWCYYAAAQK-EVSGVKGFTLGRDGHEKPMNV-QSLGW-N-IITFKDKTDIHRLEP---  138 (277)
T ss_dssp             HHHTTSSCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTCCCCCCC-CBTTG-G-GEEEECSCCTTTSCC---
T ss_pred             HHHhCCCCCCCEEEEecCCCCHHHHHHHHhc-CCCcceeEEEeccCccccccc-CcCCC-C-eEEEeccceehhcCC---
Confidence            3344457888999999999999998777653 345788888764321000000 00011 2 333455543233443   


Q ss_pred             CCCCEEEEeCCCh----h-------chHHHHHhcccCC-CEEEEEeCC--HHHHHHHHHHHHhcCcccccc
Q 026506          180 GLADSIFLDLPQP----W-------LAIPSAKKMLKQD-GILCSFSPC--IEQVQRSCESLRLNFTGKESC  236 (237)
Q Consensus       180 ~~~D~v~~~~~~~----~-------~~l~~~~~~L~~g-G~l~~~~~~--~~~~~~~~~~l~~~f~~v~~~  236 (237)
                      ..||+|+.|....    +       .+++.+.+.|+|| |.+++=.-.  .....++++.++..|..|.++
T Consensus       139 ~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~~F~~V~~~  209 (277)
T 3evf_A          139 VKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRRFGGTVIR  209 (277)
T ss_dssp             CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHCCEEEC
T ss_pred             CCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHHhcCCEEEE
Confidence            6899999987432    1       2467778999999 999865544  778888889999888877653

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.81  E-value=1.3e-08  Score=81.32  Aligned_cols=107  Identities=10%  Similarity=-0.000  Sum_probs=82.2

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhC----CCcEEEEEeCCH--------------------------HHHHHHHHHHHHc
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVA----PTGHVYTFDFHE--------------------------QRAASAREDFERT  156 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~----~~~~v~~vD~~~--------------------------~~~~~a~~~~~~~  156 (237)
                      .....|||+|+..|+.++.++..+.    +..+++++|..+                          ...+.+++++++.
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            4456999999999999988877653    367899999632                          1467789999999


Q ss_pred             CCC-CcEEEEEccccCCCCCCCCCCCCCEEEEeCCChh---chHHHHHhcccCCCEEEEEeC
Q 026506          157 GVS-SFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPW---LAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       157 ~~~-~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~---~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      |+. ++++++.+|+.+ .++....+.||+|++|.....   ..++.+.+.|+|||++++-..
T Consensus       185 gl~~~~I~li~Gda~e-tL~~~~~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiIv~DD~  245 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKD-TLPTAPIDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYVIVDDY  245 (282)
T ss_dssp             TCCSTTEEEEESCHHH-HSTTCCCCCEEEEEECCCSHHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred             CCCcCceEEEEeCHHH-HHhhCCCCCEEEEEEcCCccccHHHHHHHHHhhcCCCEEEEEcCC
Confidence            983 669999999975 233222267999999987532   569999999999999986543

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.80  E-value=5.3e-09  Score=86.41  Aligned_cols=125  Identities=19%  Similarity=0.171  Sum_probs=88.5

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC---C----CCcEEEEEccccCCCCC--CC
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG---V----SSFVTVGVRDIQGQGFP--DE  177 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~----~~~i~~~~~d~~~~~~~--~~  177 (237)
                      .+..+||.+|.|.|+.+..++++  +..+++.+|+++..++.+++.+....   .    ..++++..+|.... +.  ..
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh--~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~f-l~~~~~  280 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKL--KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPV-LKRYAK  280 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTT--CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHH-HHHHHH
T ss_pred             CCCCeEEEECCCcHHHHHHHHhc--CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHH-HHhhhh
Confidence            34689999999999999998876  34799999999999999999753211   1    13478889998641 11  01


Q ss_pred             CCCCCCEEEEeCCCh---------------hchHHHHHhcccCCCEEEEEe--CC-HHHHHHHHHHHHhcCcccc
Q 026506          178 FSGLADSIFLDLPQP---------------WLAIPSAKKMLKQDGILCSFS--PC-IEQVQRSCESLRLNFTGKE  234 (237)
Q Consensus       178 ~~~~~D~v~~~~~~~---------------~~~l~~~~~~L~~gG~l~~~~--~~-~~~~~~~~~~l~~~f~~v~  234 (237)
                      ..+.||+|+.|..++               .++++.+.+.|+|||+++.-+  +. .+....+.+.+++.|..+.
T Consensus       281 ~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~tl~~vF~~v~  355 (381)
T 3c6k_A          281 EGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVE  355 (381)
T ss_dssp             HTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHHHTTSSSCEE
T ss_pred             ccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHHHHHHHhCCcce
Confidence            125799999986431               246788999999999998643  33 2445566666766676554

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.79  E-value=8.4e-09  Score=81.60  Aligned_cols=102  Identities=15%  Similarity=0.135  Sum_probs=70.5

Q ss_pred             HHHhcCCCCC--CEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-------C-CCCcEEEEEccc
Q 026506          100 VIMYLELVPG--CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-------G-VSSFVTVGVRDI  169 (237)
Q Consensus       100 ~~~~~~~~~~--~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-------~-~~~~i~~~~~d~  169 (237)
                      +...+++.++  .+|||+|||+|..++.++..  + ++|+++|.++.+.+.++++++..       + +.+++++..+|.
T Consensus        78 l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~--g-~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~  154 (258)
T 2oyr_A           78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASV--G-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (258)
T ss_dssp             HHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH--T-CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred             HHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc--C-CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence            5666777777  99999999999999999987  2 57999999999877777766432       1 223599999998


Q ss_pred             cCCCCCCCCCCCCCEEEEeCCChh----chHHHHHhcccCC
Q 026506          170 QGQGFPDEFSGLADSIFLDLPQPW----LAIPSAKKMLKQD  206 (237)
Q Consensus       170 ~~~~~~~~~~~~~D~v~~~~~~~~----~~l~~~~~~L~~g  206 (237)
                      .+. ++. ....||+|++|++-+.    +.+++..+.|++.
T Consensus       155 ~~~-L~~-~~~~fDvV~lDP~y~~~~~saavkk~~~~lr~l  193 (258)
T 2oyr_A          155 LTA-LTD-ITPRPQVVYLDPMFPHKQKSALVKKEMRVFQSL  193 (258)
T ss_dssp             HHH-STT-CSSCCSEEEECCCCCCCCC-----HHHHHHHHH
T ss_pred             HHH-HHh-CcccCCEEEEcCCCCCcccchHHHHHHHHHHHh
Confidence            751 111 1146999999986432    2334444555443

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.78  E-value=8.7e-08  Score=77.67  Aligned_cols=87  Identities=17%  Similarity=0.232  Sum_probs=68.1

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC--CCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPD  176 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~  176 (237)
                      .+++.+.++||..++|..+|.|+.+..++..+++.++|+++|.++++++.++ ++    ..++++++.+++.+.  .+..
T Consensus        48 Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~~l~~~L~~  122 (347)
T 3tka_A           48 EAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFSALGEYVAE  122 (347)
T ss_dssp             HHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGGGHHHHHHH
T ss_pred             HHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHHHHHHHHHh
Confidence            4788889999999999999999999999998888899999999999999884 33    235699999988761  1111


Q ss_pred             C-CCCCCCEEEEeCC
Q 026506          177 E-FSGLADSIFLDLP  190 (237)
Q Consensus       177 ~-~~~~~D~v~~~~~  190 (237)
                      . ..+.+|.|+.|.+
T Consensus       123 ~g~~~~vDgILfDLG  137 (347)
T 3tka_A          123 RDLIGKIDGILLDLG  137 (347)
T ss_dssp             TTCTTCEEEEEEECS
T ss_pred             cCCCCcccEEEECCc
Confidence            1 1135999987654

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.78  E-value=3.9e-08  Score=85.69  Aligned_cols=127  Identities=12%  Similarity=0.115  Sum_probs=94.1

Q ss_pred             ccccccccHH-HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCC------------CcEEEEEeCCHHHHHHHHHHHHH
Q 026506           89 TQILYIADIS-FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAP------------TGHVYTFDFHEQRAASAREDFER  155 (237)
Q Consensus        89 ~~~~~~~~~~-~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~------------~~~v~~vD~~~~~~~~a~~~~~~  155 (237)
                      .+...|..+. .++..+.+.++.+|+|..||+|++......++..            ...++|+|+++.....|+-++..
T Consensus       197 GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~l  276 (530)
T 3ufb_A          197 GEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLL  276 (530)
T ss_dssp             CCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHH
T ss_pred             ceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHh
Confidence            4455676665 4778889999999999999999998887765421            24699999999999999999888


Q ss_pred             cCCCCcEEEEEccccCCCCCCC-CCCCCCEEEEeCCCh---------------------hchHHHHHhccc-------CC
Q 026506          156 TGVSSFVTVGVRDIQGQGFPDE-FSGLADSIFLDLPQP---------------------WLAIPSAKKMLK-------QD  206 (237)
Q Consensus       156 ~~~~~~i~~~~~d~~~~~~~~~-~~~~~D~v~~~~~~~---------------------~~~l~~~~~~L~-------~g  206 (237)
                      +|... -++..+|....+.... ...+||+|+.|+|-.                     ..+++.+.+.||       +|
T Consensus       277 hg~~~-~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~g  355 (530)
T 3ufb_A          277 HGLEY-PRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNG  355 (530)
T ss_dssp             HTCSC-CEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSC
T ss_pred             cCCcc-ccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCC
Confidence            88765 5677788764322211 124799999998721                     124677777776       79


Q ss_pred             CEEEEEeCCH
Q 026506          207 GILCSFSPCI  216 (237)
Q Consensus       207 G~l~~~~~~~  216 (237)
                      |++.++.|..
T Consensus       356 Gr~avVlP~g  365 (530)
T 3ufb_A          356 GRAAVVVPNG  365 (530)
T ss_dssp             CEEEEEEEHH
T ss_pred             ceEEEEecch
Confidence            9999998853

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.77  E-value=2.5e-09  Score=84.53  Aligned_cols=89  Identities=18%  Similarity=0.183  Sum_probs=65.5

Q ss_pred             HHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC
Q 026506           97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD  176 (237)
Q Consensus        97 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  176 (237)
                      ...+++.+.+.++++|||+|||+|.++. +. . .+..+|+++|+++.+++.+++++...   .++++..+|+.+.+++.
T Consensus        10 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~-~-~~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~~~~~   83 (252)
T 1qyr_A           10 IDSIVSAINPQKGQAMVEIGPGLAALTE-PV-G-ERLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNFGE   83 (252)
T ss_dssp             HHHHHHHHCCCTTCCEEEECCTTTTTHH-HH-H-TTCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCHHH
T ss_pred             HHHHHHhcCCCCcCEEEEECCCCcHHHH-hh-h-CCCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhCCHHH
Confidence            3457778888899999999999999998 54 3 22223999999999999999875432   24999999998644432


Q ss_pred             CC--CCCCCEEEEeCCC
Q 026506          177 EF--SGLADSIFLDLPQ  191 (237)
Q Consensus       177 ~~--~~~~D~v~~~~~~  191 (237)
                      ..  .+..|.|+.|.|-
T Consensus        84 ~~~~~~~~~~vvsNlPY  100 (252)
T 1qyr_A           84 LAEKMGQPLRVFGNLPY  100 (252)
T ss_dssp             HHHHHTSCEEEEEECCT
T ss_pred             hhcccCCceEEEECCCC
Confidence            10  0235788888874

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.74  E-value=1.6e-08  Score=89.30  Aligned_cols=101  Identities=15%  Similarity=0.074  Sum_probs=72.7

Q ss_pred             CCEEEEEccCccHHHHHHHHH---hC---------CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCC-
Q 026506          109 GCLVLESGTGSGSLTTSLARA---VA---------PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP-  175 (237)
Q Consensus       109 ~~~vldiG~G~G~~~~~~~~~---~~---------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-  175 (237)
                      +..|||+|||+|-++...+.+   .+         ...+|+++|-|+.+...++.... +++.++|+++.+|+.+..++ 
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~  488 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA  488 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence            458999999999997543222   22         23599999999987766665544 78888899999999874442 


Q ss_pred             -CCCCCCCCEEEEeCCCh-------hchHHHHHhcccCCCEEE
Q 026506          176 -DEFSGLADSIFLDLPQP-------WLAIPSAKKMLKQDGILC  210 (237)
Q Consensus       176 -~~~~~~~D~v~~~~~~~-------~~~l~~~~~~L~~gG~l~  210 (237)
                       ....+++|+|+...-..       .+.|..+.+.|||||+++
T Consensus       489 ~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          489 KDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             ccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence             00016799999865432       246777789999999886

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=98.72  E-value=1.3e-08  Score=78.96  Aligned_cols=117  Identities=21%  Similarity=0.200  Sum_probs=74.9

Q ss_pred             CCCCCCEEEEEccCccHHHHHHHHH--hCC-CcEEEEEeC--CHHHHHHHHHHHHHcCCCCcEEEEEc-cccCCCCCCCC
Q 026506          105 ELVPGCLVLESGTGSGSLTTSLARA--VAP-TGHVYTFDF--HEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPDEF  178 (237)
Q Consensus       105 ~~~~~~~vldiG~G~G~~~~~~~~~--~~~-~~~v~~vD~--~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~  178 (237)
                      -++|+++|+|+||++|+++...+..  .+. .+.++++|.  .|-...       ..|+ +.+++..+ |+.+  +..  
T Consensus        70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~-------~~Gv-~~i~~~~G~Df~~--~~~--  137 (269)
T 2px2_A           70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQ-------SYGW-NIVTMKSGVDVFY--KPS--  137 (269)
T ss_dssp             SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCC-------STTG-GGEEEECSCCGGG--SCC--
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCccc-------CCCc-eEEEeeccCCccC--CCC--
Confidence            4789999999999999999888876  311 234455552  110000       0121 22566657 9875  332  


Q ss_pred             CCCCCEEEEeCCChh-----------chHHHHHhcccCCC-EEEEEeCCH--HHHHHHHHHHHhcCcccc
Q 026506          179 SGLADSIFLDLPQPW-----------LAIPSAKKMLKQDG-ILCSFSPCI--EQVQRSCESLRLNFTGKE  234 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~-----------~~l~~~~~~L~~gG-~l~~~~~~~--~~~~~~~~~l~~~f~~v~  234 (237)
                       ..+|+|++|+....           .+++-+.+.|+||| .+++=.-..  +...+.++.++..|..+.
T Consensus       138 -~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk~~F~~vk  206 (269)
T 2px2_A          138 -EISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQRRFGGGL  206 (269)
T ss_dssp             -CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHCCEE
T ss_pred             -CCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHHHHcCCEE
Confidence             57999999875321           24666778999999 776544443  566676778887777665

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.72  E-value=6.5e-09  Score=81.96  Aligned_cols=129  Identities=16%  Similarity=0.188  Sum_probs=84.2

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cccCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPDEF  178 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~  178 (237)
                      +.+...+.++.+|||+|||+|+++..++... +...++++|+.......+... ...+. +.+.+... |+.  .++.  
T Consensus        82 i~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~-gv~sV~GvdvG~d~~~~pi~~-~~~g~-~ii~~~~~~dv~--~l~~--  154 (282)
T 3gcz_A           82 MEERGYVKPTGIVVDLGCGRGGWSYYAASLK-NVKKVMAFTLGVQGHEKPIMR-TTLGW-NLIRFKDKTDVF--NMEV--  154 (282)
T ss_dssp             HHHTTSCCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCCC-CBTTG-GGEEEECSCCGG--GSCC--
T ss_pred             HHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc-CCCeeeeEEeccCcccccccc-ccCCC-ceEEeeCCcchh--hcCC--
Confidence            3444467899999999999999998877654 446788999865422111100 00111 21333222 332  2333  


Q ss_pred             CCCCCEEEEeCCCh----h-------chHHHHHhcccCC--CEEEEEeCC--HHHHHHHHHHHHhcCcccccc
Q 026506          179 SGLADSIFLDLPQP----W-------LAIPSAKKMLKQD--GILCSFSPC--IEQVQRSCESLRLNFTGKESC  236 (237)
Q Consensus       179 ~~~~D~v~~~~~~~----~-------~~l~~~~~~L~~g--G~l~~~~~~--~~~~~~~~~~l~~~f~~v~~~  236 (237)
                       ..+|+|++|+...    +       .+++-+.+.|+||  |.+++=.-.  .....++++.++..|..|.++
T Consensus       155 -~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk~~F~~V~~~  226 (282)
T 3gcz_A          155 -IPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQLKHGGGLVR  226 (282)
T ss_dssp             -CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHHHHHCCEEEC
T ss_pred             -CCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHHHhcCCEEEE
Confidence             6899999987533    1       2466778999999  998865544  778888889999888877653

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=98.68  E-value=5.4e-09  Score=89.69  Aligned_cols=102  Identities=17%  Similarity=0.161  Sum_probs=70.7

Q ss_pred             cCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC----------
Q 026506          104 LELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG----------  171 (237)
Q Consensus       104 ~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~----------  171 (237)
                      .++++|++||.+|+ |+ |.+++++++..+  .++++++.+++.++.+++    .|.+..++....|+..          
T Consensus       224 ~~~~~g~~VlV~GasG~vG~~avqlak~~G--a~vi~~~~~~~~~~~~~~----lGa~~vi~~~~~d~~~~~~~~~~~~~  297 (456)
T 3krt_A          224 AGMKQGDNVLIWGASGGLGSYATQFALAGG--ANPICVVSSPQKAEICRA----MGAEAIIDRNAEGYRFWKDENTQDPK  297 (456)
T ss_dssp             TCCCTTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH----HTCCEEEETTTTTCCSEEETTEECHH
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHcC--CeEEEEECCHHHHHHHHh----hCCcEEEecCcCcccccccccccchH
Confidence            57889999999998 76 888888888863  588888899999998876    4654322222222100          


Q ss_pred             ------CCCCC-CCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          172 ------QGFPD-EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       172 ------~~~~~-~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                            ..+.. ..+.++|+||.....  ..++.+.+.|+++|+++.++
T Consensus       298 ~~~~~~~~i~~~t~g~g~Dvvid~~G~--~~~~~~~~~l~~~G~iv~~G  344 (456)
T 3krt_A          298 EWKRFGKRIRELTGGEDIDIVFEHPGR--ETFGASVFVTRKGGTITTCA  344 (456)
T ss_dssp             HHHHHHHHHHHHHTSCCEEEEEECSCH--HHHHHHHHHEEEEEEEEESC
T ss_pred             HHHHHHHHHHHHhCCCCCcEEEEcCCc--hhHHHHHHHhhCCcEEEEEe
Confidence                  00000 012479997766554  58899999999999999765

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=98.67  E-value=8.7e-09  Score=88.19  Aligned_cols=102  Identities=16%  Similarity=0.210  Sum_probs=71.4

Q ss_pred             cCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC----------
Q 026506          104 LELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG----------  171 (237)
Q Consensus       104 ~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~----------  171 (237)
                      .++++|++||..|+ |. |..+.++++..+  .++++++.+++.++.+++    .|.+..++....|+..          
T Consensus       216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~G--a~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~~~~~~  289 (447)
T 4a0s_A          216 AQMKQGDIVLIWGASGGLGSYAIQFVKNGG--GIPVAVVSSAQKEAAVRA----LGCDLVINRAELGITDDIADDPRRVV  289 (447)
T ss_dssp             TCCCTTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH----TTCCCEEEHHHHTCCTTGGGCHHHHH
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----cCCCEEEecccccccccccccccccc
Confidence            67899999999998 66 788888888763  588899999999988865    5765433332223210          


Q ss_pred             -------CCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          172 -------QGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       172 -------~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                             ..+....+.++|+||.....  ..++.+.+.|+++|+++.++
T Consensus       290 ~~~~~~~~~v~~~~g~g~Dvvid~~G~--~~~~~~~~~l~~~G~iv~~G  336 (447)
T 4a0s_A          290 ETGRKLAKLVVEKAGREPDIVFEHTGR--VTFGLSVIVARRGGTVVTCG  336 (447)
T ss_dssp             HHHHHHHHHHHHHHSSCCSEEEECSCH--HHHHHHHHHSCTTCEEEESC
T ss_pred             hhhhHHHHHHHHHhCCCceEEEECCCc--hHHHHHHHHHhcCCEEEEEe
Confidence                   00000112579998866654  37889999999999999765

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=98.57  E-value=2.2e-08  Score=82.09  Aligned_cols=103  Identities=17%  Similarity=0.235  Sum_probs=71.5

Q ss_pred             HhcCCCCCCEEEEEc-cCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC-CC
Q 026506          102 MYLELVPGCLVLESG-TGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-EF  178 (237)
Q Consensus       102 ~~~~~~~~~~vldiG-~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~  178 (237)
                      ...++++|++||..| +|. |..+.++++..+  .+|++++.+++.++.+++    .|.+..++....|+.+ .+.. ..
T Consensus       134 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~-~~~~~~~  206 (325)
T 3jyn_A          134 QTYQVKPGEIILFHAAAGGVGSLACQWAKALG--AKLIGTVSSPEKAAHAKA----LGAWETIDYSHEDVAK-RVLELTD  206 (325)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHH-HHHHHTT
T ss_pred             HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHH-HHHHHhC
Confidence            345789999999999 566 888888888863  589999999999998876    4544322211111111 0000 11


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +.++|+|+.+...  ..++.+.+.|+++|+++.++
T Consensus       207 ~~g~Dvvid~~g~--~~~~~~~~~l~~~G~iv~~g  239 (325)
T 3jyn_A          207 GKKCPVVYDGVGQ--DTWLTSLDSVAPRGLVVSFG  239 (325)
T ss_dssp             TCCEEEEEESSCG--GGHHHHHTTEEEEEEEEECC
T ss_pred             CCCceEEEECCCh--HHHHHHHHHhcCCCEEEEEe
Confidence            2479998766654  57899999999999999875

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=98.57  E-value=3e-08  Score=81.66  Aligned_cols=105  Identities=16%  Similarity=0.150  Sum_probs=71.2

Q ss_pred             HhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ...++++|++||..|+ |. |..+.++++..+  .+|++++.+++.++.+.+.   .|.+..++....|+.+ .+.....
T Consensus       143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~-~~~~~~~  216 (336)
T 4b7c_A          143 DVGQPKNGETVVISGAAGAVGSVAGQIARLKG--CRVVGIAGGAEKCRFLVEE---LGFDGAIDYKNEDLAA-GLKRECP  216 (336)
T ss_dssp             HTTCCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHT---TCCSEEEETTTSCHHH-HHHHHCT
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHH---cCCCEEEECCCHHHHH-HHHHhcC
Confidence            5678899999999998 54 778888887753  5899999999988887332   4543212211111111 0111112


Q ss_pred             CCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       180 ~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +++|+++.+...  ..++.+.+.|+++|+++.++.
T Consensus       217 ~~~d~vi~~~g~--~~~~~~~~~l~~~G~iv~~G~  249 (336)
T 4b7c_A          217 KGIDVFFDNVGG--EILDTVLTRIAFKARIVLCGA  249 (336)
T ss_dssp             TCEEEEEESSCH--HHHHHHHTTEEEEEEEEECCC
T ss_pred             CCceEEEECCCc--chHHHHHHHHhhCCEEEEEee
Confidence            579998776653  478999999999999997754

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=98.56  E-value=5.7e-07  Score=68.87  Aligned_cols=126  Identities=17%  Similarity=0.212  Sum_probs=83.1

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cccCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPDEF  178 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~  178 (237)
                      +.+...++++.+|+|+||++|+++...+... +..+|+++|+-..-.+.- ..+...|+.. +.+..+ |+..  ++.  
T Consensus        70 i~ek~~l~~g~~VvDLGaapGGWSq~~a~~~-g~~~V~avdvG~~ghe~P-~~~~s~gwn~-v~fk~gvDv~~--~~~--  142 (267)
T 3p8z_A           70 FVERNMVIPEGRVIDLGCGRGGWSYYCAGLK-KVTEVRGYTKGGPGHEEP-VPMSTYGWNI-VKLMSGKDVFY--LPP--  142 (267)
T ss_dssp             HHHTTSSCCCEEEEEESCTTSHHHHHHHTST-TEEEEEEECCCSTTSCCC-CCCCCTTTTS-EEEECSCCGGG--CCC--
T ss_pred             HHHhcCCCCCCEEEEcCCCCCcHHHHHHHhc-CCCEEEEEecCCCCccCc-chhhhcCcCc-eEEEeccceee--cCC--
Confidence            4444567899999999999999998877775 446899999854321100 0011234444 899988 8753  333  


Q ss_pred             CCCCCEEEEeCCCh----h-------chHHHHHhcccCCCEEE--EEeCCHHHHHHHHHHHHhcCcccc
Q 026506          179 SGLADSIFLDLPQP----W-------LAIPSAKKMLKQDGILC--SFSPCIEQVQRSCESLRLNFTGKE  234 (237)
Q Consensus       179 ~~~~D~v~~~~~~~----~-------~~l~~~~~~L~~gG~l~--~~~~~~~~~~~~~~~l~~~f~~v~  234 (237)
                       ..+|.|++|+...    +       .+|+-+-+.|++ |-++  ++.|......+.++.++..|..+.
T Consensus       143 -~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~e~l~~lq~~fgg~l  209 (267)
T 3p8z_A          143 -EKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVIEHLERLQRKHGGML  209 (267)
T ss_dssp             -CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHHHHHHHHHHHHCCEE
T ss_pred             -ccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHHHHHHHHHHHhCCEe
Confidence             5699999997532    1       256666788888 5555  345656566677777776555443

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.53  E-value=8.4e-08  Score=76.15  Aligned_cols=122  Identities=16%  Similarity=0.202  Sum_probs=79.3

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cccCCCCCCCCCCCCCE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPDEFSGLADS  184 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~~~~D~  184 (237)
                      ..++.+|||+||++|+++..++... +...|+++|+.......... ....+. +.+.+... |+.  .+..   ..+|+
T Consensus        79 ~~~g~~vlDLGaaPGgWsqva~~~~-gv~sV~Gvdlg~~~~~~P~~-~~~~~~-~iv~~~~~~di~--~l~~---~~~Dl  150 (300)
T 3eld_A           79 LRITGRVLDLGCGRGGWSYYAAAQK-EVMSVKGYTLGIEGHEKPIH-MQTLGW-NIVKFKDKSNVF--TMPT---EPSDT  150 (300)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCC-CCBTTG-GGEEEECSCCTT--TSCC---CCCSE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHhc-CCceeeeEEecccccccccc-ccccCC-ceEEeecCceee--ecCC---CCcCE
Confidence            5688999999999999998888764 34678899986431100000 000011 21222211 322  2333   67999


Q ss_pred             EEEeCCCh-----------hchHHHHHhcccCC-CEEEEEeCC--HHHHHHHHHHHHhcCccccc
Q 026506          185 IFLDLPQP-----------WLAIPSAKKMLKQD-GILCSFSPC--IEQVQRSCESLRLNFTGKES  235 (237)
Q Consensus       185 v~~~~~~~-----------~~~l~~~~~~L~~g-G~l~~~~~~--~~~~~~~~~~l~~~f~~v~~  235 (237)
                      |++|....           ..+++-+.+.|+|| |.+++=.-.  ......+++.++..|..|.+
T Consensus       151 VlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~lk~~F~~V~~  215 (300)
T 3eld_A          151 LLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLERLQLRFGGGIV  215 (300)
T ss_dssp             EEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHHHHHHHCCEEE
T ss_pred             EeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHHHHHHHhCCcEEE
Confidence            99987533           13577778999999 998865544  78888888999888887765

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=98.51  E-value=9.1e-08  Score=78.66  Aligned_cols=102  Identities=19%  Similarity=0.240  Sum_probs=70.1

Q ss_pred             hcCCCCCCEEEEEc-cCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC-CCC
Q 026506          103 YLELVPGCLVLESG-TGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-EFS  179 (237)
Q Consensus       103 ~~~~~~~~~vldiG-~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~  179 (237)
                      ..++++|++||..| +|. |..+.++++..+  .+|++++.+++.++.+++    .|.+..++....|+.+ .+.. ..+
T Consensus       143 ~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~----~ga~~~~~~~~~~~~~-~~~~~~~~  215 (334)
T 3qwb_A          143 AYHVKKGDYVLLFAAAGGVGLILNQLLKMKG--AHTIAVASTDEKLKIAKE----YGAEYLINASKEDILR-QVLKFTNG  215 (334)
T ss_dssp             TSCCCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH----TTCSEEEETTTSCHHH-HHHHHTTT
T ss_pred             hccCCCCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCcEEEeCCCchHHH-HHHHHhCC
Confidence            34789999999999 555 778888888753  589999999999988776    4643322211112111 0000 012


Q ss_pred             CCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       180 ~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .++|+|+.+...  ..++.+.+.|+++|+++.++
T Consensus       216 ~g~D~vid~~g~--~~~~~~~~~l~~~G~iv~~G  247 (334)
T 3qwb_A          216 KGVDASFDSVGK--DTFEISLAALKRKGVFVSFG  247 (334)
T ss_dssp             SCEEEEEECCGG--GGHHHHHHHEEEEEEEEECC
T ss_pred             CCceEEEECCCh--HHHHHHHHHhccCCEEEEEc
Confidence            479998876654  58899999999999999774

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=98.46  E-value=1.3e-07  Score=79.00  Aligned_cols=98  Identities=9%  Similarity=0.010  Sum_probs=66.6

Q ss_pred             CCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          107 VPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       107 ~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      ++|++||.+|+ |. |.+++++++..+  .+|+++. +++.++.+++    +|.+..++....|+.+ .+...+.+++|+
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~G--a~Vi~~~-~~~~~~~~~~----lGa~~vi~~~~~~~~~-~v~~~t~g~~d~  234 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSG--YIPIATC-SPHNFDLAKS----RGAEEVFDYRAPNLAQ-TIRTYTKNNLRY  234 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEE-CGGGHHHHHH----TTCSEEEETTSTTHHH-HHHHHTTTCCCE
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCC--CEEEEEe-CHHHHHHHHH----cCCcEEEECCCchHHH-HHHHHccCCccE
Confidence            88999999999 54 888888998863  4788775 7888887766    5755423322222221 111112256999


Q ss_pred             EEEeCCChhchHHHHHhcc-cCCCEEEEEe
Q 026506          185 IFLDLPQPWLAIPSAKKML-KQDGILCSFS  213 (237)
Q Consensus       185 v~~~~~~~~~~l~~~~~~L-~~gG~l~~~~  213 (237)
                      ||.....+ ..++.+.+.| +++|+++.++
T Consensus       235 v~d~~g~~-~~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          235 ALDCITNV-ESTTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             EEESSCSH-HHHHHHHHHSCTTCEEEEESS
T ss_pred             EEECCCch-HHHHHHHHHhhcCCCEEEEEe
Confidence            77665544 4788899999 6999998765

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=98.46  E-value=1.7e-06  Score=68.39  Aligned_cols=127  Identities=17%  Similarity=0.202  Sum_probs=81.8

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cccCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPDEF  178 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~  178 (237)
                      +.+...++++.+|||+||++|+++...+... +...|+++|+...-.+.- ..+..+++.. +.+..+ |+..  ++.  
T Consensus        86 i~~~~~l~~~~~VlDLGaapGGwsq~~~~~~-gv~~V~avdvG~~~he~P-~~~~ql~w~l-V~~~~~~Dv~~--l~~--  158 (321)
T 3lkz_A           86 LVERRFLEPVGKVIDLGCGRGGWCYYMATQK-RVQEVRGYTKGGPGHEEP-QLVQSYGWNI-VTMKSGVDVFY--RPS--  158 (321)
T ss_dssp             HHHTTSCCCCEEEEEETCTTCHHHHHHTTCT-TEEEEEEECCCSTTSCCC-CCCCBTTGGG-EEEECSCCTTS--SCC--
T ss_pred             HHHhcCCCCCCEEEEeCCCCCcHHHHHHhhc-CCCEEEEEEcCCCCccCc-chhhhcCCcc-eEEEeccCHhh--CCC--
Confidence            4455567899999999999999998777765 346899999854311000 0000122223 667666 7753  333  


Q ss_pred             CCCCCEEEEeCCCh----h-------chHHHHHhcccCC-CEEEEE--eCCHHHHHHHHHHHHhcCcccc
Q 026506          179 SGLADSIFLDLPQP----W-------LAIPSAKKMLKQD-GILCSF--SPCIEQVQRSCESLRLNFTGKE  234 (237)
Q Consensus       179 ~~~~D~v~~~~~~~----~-------~~l~~~~~~L~~g-G~l~~~--~~~~~~~~~~~~~l~~~f~~v~  234 (237)
                       ..+|+|++|+...    .       .+|+-+-+.|++| |-+++=  .|......+.++.++.-|..+.
T Consensus       159 -~~~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~~lq~~fgg~l  227 (321)
T 3lkz_A          159 -ECCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKMELLQRRYGGGL  227 (321)
T ss_dssp             -CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHHHHHHHHCCEE
T ss_pred             -CCCCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHHHHHHHHhCCEe
Confidence             5699999988632    1       2566667888888 777644  4544777777777777555443

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.44  E-value=3.5e-07  Score=72.52  Aligned_cols=85  Identities=18%  Similarity=0.193  Sum_probs=67.3

Q ss_pred             HHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC--CC
Q 026506           98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--FP  175 (237)
Q Consensus        98 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~  175 (237)
                      ..+++.+.++++..++|.+||.|+.+..++..   .++|+++|.++.+++.+++ ++.    +++.++++|+.+..  +.
T Consensus        12 ~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~   83 (285)
T 1wg8_A           12 QEALDLLAVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLA   83 (285)
T ss_dssp             HHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHH
T ss_pred             HHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHH
Confidence            34778888999999999999999999999987   4799999999999999998 543    35999999997621  11


Q ss_pred             CCCCCCCCEEEEeCC
Q 026506          176 DEFSGLADSIFLDLP  190 (237)
Q Consensus       176 ~~~~~~~D~v~~~~~  190 (237)
                      ....+.+|.|+.|.+
T Consensus        84 ~~g~~~vDgIL~DLG   98 (285)
T 1wg8_A           84 ALGVERVDGILADLG   98 (285)
T ss_dssp             HTTCSCEEEEEEECS
T ss_pred             HcCCCCcCEEEeCCc
Confidence            111146999998765

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=98.44  E-value=1.5e-07  Score=78.26  Aligned_cols=104  Identities=16%  Similarity=0.179  Sum_probs=71.7

Q ss_pred             HhcCCCCCCEEEEEc-cCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          102 MYLELVPGCLVLESG-TGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       102 ~~~~~~~~~~vldiG-~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ...++++|++||..| +|. |..+.++++..+  .+|++++.+++.++.+++    .|.+..++....|+.+ .+.....
T Consensus       157 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~-~~~~~~~  229 (362)
T 2c0c_A          157 ELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAK--CHVIGTCSSDEKSAFLKS----LGCDRPINYKTEPVGT-VLKQEYP  229 (362)
T ss_dssp             HHTCCCTTCEEEETTTTBTTHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH----TTCSEEEETTTSCHHH-HHHHHCT
T ss_pred             HhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHH----cCCcEEEecCChhHHH-HHHHhcC
Confidence            345789999999999 566 888888888763  589999999998888876    4654312111111111 0111112


Q ss_pred             CCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       180 ~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .++|+|+.....  ..++.+.+.|+++|+++.++.
T Consensus       230 ~g~D~vid~~g~--~~~~~~~~~l~~~G~iv~~g~  262 (362)
T 2c0c_A          230 EGVDVVYESVGG--AMFDLAVDALATKGRLIVIGF  262 (362)
T ss_dssp             TCEEEEEECSCT--HHHHHHHHHEEEEEEEEECCC
T ss_pred             CCCCEEEECCCH--HHHHHHHHHHhcCCEEEEEeC
Confidence            569998877664  478999999999999998764

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=98.43  E-value=6.4e-08  Score=78.92  Aligned_cols=96  Identities=19%  Similarity=0.146  Sum_probs=68.0

Q ss_pred             HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .+...++++|++||.+|+|+ |.++.++++..+  .+|++++ +++.++.+++    +|.+.   +. .| . ..+    
T Consensus       134 al~~~~~~~g~~VlV~GaG~vG~~a~qlak~~G--a~Vi~~~-~~~~~~~~~~----lGa~~---v~-~d-~-~~v----  196 (315)
T 3goh_A          134 AFEKIPLTKQREVLIVGFGAVNNLLTQMLNNAG--YVVDLVS-ASLSQALAAK----RGVRH---LY-RE-P-SQV----  196 (315)
T ss_dssp             HHTTSCCCSCCEEEEECCSHHHHHHHHHHHHHT--CEEEEEC-SSCCHHHHHH----HTEEE---EE-SS-G-GGC----
T ss_pred             HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEE-ChhhHHHHHH----cCCCE---EE-cC-H-HHh----
Confidence            34667789999999999987 888999998874  4899999 8998888876    46432   11 24 2 222    


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +.++|+||......  .+..+.+.|+++|+++.+..
T Consensus       197 ~~g~Dvv~d~~g~~--~~~~~~~~l~~~G~~v~~g~  230 (315)
T 3goh_A          197 TQKYFAIFDAVNSQ--NAAALVPSLKANGHIICIQD  230 (315)
T ss_dssp             CSCEEEEECC---------TTGGGEEEEEEEEEECC
T ss_pred             CCCccEEEECCCch--hHHHHHHHhcCCCEEEEEeC
Confidence            26899987655443  34778899999999998753

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=98.41  E-value=4e-07  Score=75.10  Aligned_cols=103  Identities=17%  Similarity=0.195  Sum_probs=70.4

Q ss_pred             HhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC-
Q 026506          102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF-  178 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-  178 (237)
                      ...++++|++||..|+ |. |..+.++++..+  .+|++++.+++.++.+++    .|.+..++.. .++.+ .+.... 
T Consensus       153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~----~ga~~v~~~~-~~~~~-~v~~~~~  224 (342)
T 4eye_A          153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGMG--AKVIAVVNRTAATEFVKS----VGADIVLPLE-EGWAK-AVREATG  224 (342)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHH----HTCSEEEESS-TTHHH-HHHHHTT
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----cCCcEEecCc-hhHHH-HHHHHhC
Confidence            4567899999999998 55 888888888863  589999999998888876    3654322221 22211 111111 


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +.++|+|+.+...+  .++.+.+.|+++|+++.++.
T Consensus       225 ~~g~Dvvid~~g~~--~~~~~~~~l~~~G~iv~~G~  258 (342)
T 4eye_A          225 GAGVDMVVDPIGGP--AFDDAVRTLASEGRLLVVGF  258 (342)
T ss_dssp             TSCEEEEEESCC----CHHHHHHTEEEEEEEEEC--
T ss_pred             CCCceEEEECCchh--HHHHHHHhhcCCCEEEEEEc
Confidence            13799988766543  78999999999999997763

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=98.35  E-value=9.2e-07  Score=72.23  Aligned_cols=101  Identities=19%  Similarity=0.183  Sum_probs=68.9

Q ss_pred             HHHhcCCCCCCEEEEEc-cCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESG-TGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE  177 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG-~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  177 (237)
                      .+...++++|++||.+| +|+ |.++.++++..+  .++++++ +++..+.+++    .|.+..++....|.    +...
T Consensus       144 al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~G--a~vi~~~-~~~~~~~~~~----lGa~~~i~~~~~~~----~~~~  212 (321)
T 3tqh_A          144 ALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKG--TTVITTA-SKRNHAFLKA----LGAEQCINYHEEDF----LLAI  212 (321)
T ss_dssp             HHHHTTCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEE-CHHHHHHHHH----HTCSEEEETTTSCH----HHHC
T ss_pred             HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcC--CEEEEEe-ccchHHHHHH----cCCCEEEeCCCcch----hhhh
Confidence            44677899999999997 777 888899998863  4788887 5555666665    57654222211120    1111


Q ss_pred             CCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       178 ~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      . .++|+|+......  .++.+.+.|+++|+++.++.
T Consensus       213 ~-~g~D~v~d~~g~~--~~~~~~~~l~~~G~iv~~g~  246 (321)
T 3tqh_A          213 S-TPVDAVIDLVGGD--VGIQSIDCLKETGCIVSVPT  246 (321)
T ss_dssp             C-SCEEEEEESSCHH--HHHHHGGGEEEEEEEEECCS
T ss_pred             c-cCCCEEEECCCcH--HHHHHHHhccCCCEEEEeCC
Confidence            1 4699977665543  34889999999999997754

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=98.33  E-value=5.6e-07  Score=73.57  Aligned_cols=101  Identities=12%  Similarity=0.110  Sum_probs=69.6

Q ss_pred             HhcCCCCCC-EEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          102 MYLELVPGC-LVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       102 ~~~~~~~~~-~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      ..+++++++ +||..|+ |+ |..+.++++..+  .+|++++.+++.++.+++    .|.+..++.  .+.. . .....
T Consensus       139 ~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~G--a~Vi~~~~~~~~~~~~~~----lGa~~vi~~--~~~~-~-~~~~~  208 (324)
T 3nx4_A          139 EDAGIRPQDGEVVVTGASGGVGSTAVALLHKLG--YQVAAVSGRESTHGYLKS----LGANRILSR--DEFA-E-SRPLE  208 (324)
T ss_dssp             HHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCGGGHHHHHH----HTCSEEEEG--GGSS-C-CCSSC
T ss_pred             hhcccCCCCCeEEEECCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----cCCCEEEec--CCHH-H-HHhhc
Confidence            344555532 4999998 66 888999998863  489999999999998877    465442322  2211 1 22222


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .+++|+++-....+  .++.+.+.|+++|+++.++.
T Consensus       209 ~~~~d~v~d~~g~~--~~~~~~~~l~~~G~iv~~G~  242 (324)
T 3nx4_A          209 KQLWAGAIDTVGDK--VLAKVLAQMNYGGCVAACGL  242 (324)
T ss_dssp             CCCEEEEEESSCHH--HHHHHHHTEEEEEEEEECCC
T ss_pred             CCCccEEEECCCcH--HHHHHHHHHhcCCEEEEEec
Confidence            36799977555433  89999999999999997753

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=98.31  E-value=3.3e-07  Score=75.28  Aligned_cols=102  Identities=18%  Similarity=0.269  Sum_probs=68.9

Q ss_pred             hcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC-CCC
Q 026506          103 YLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-EFS  179 (237)
Q Consensus       103 ~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~  179 (237)
                      ..+++++++||..|+ |. |..+..++...+  .+|++++.+++.++.+++    .+.+..++....+..+ .+.. ...
T Consensus       140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G--~~Vi~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~-~i~~~~~~  212 (333)
T 1wly_A          140 THKVKPGDYVLIHAAAGGMGHIMVPWARHLG--ATVIGTVSTEEKAETARK----LGCHHTINYSTQDFAE-VVREITGG  212 (333)
T ss_dssp             TSCCCTTCEEEETTTTSTTHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHH-HHHHHHTT
T ss_pred             hhCCCCCCEEEEECCccHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCCEEEECCCHHHHH-HHHHHhCC
Confidence            457889999999995 44 777777777753  589999999988888765    3543211111111110 0000 011


Q ss_pred             CCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       180 ~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .++|+++.+...  ..++.+.+.|+++|+++.++
T Consensus       213 ~~~d~vi~~~g~--~~~~~~~~~l~~~G~iv~~g  244 (333)
T 1wly_A          213 KGVDVVYDSIGK--DTLQKSLDCLRPRGMCAAYG  244 (333)
T ss_dssp             CCEEEEEECSCT--TTHHHHHHTEEEEEEEEECC
T ss_pred             CCCeEEEECCcH--HHHHHHHHhhccCCEEEEEe
Confidence            469998877665  58899999999999998775

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=98.30  E-value=5.4e-07  Score=74.63  Aligned_cols=103  Identities=21%  Similarity=0.203  Sum_probs=70.4

Q ss_pred             HhcCCCCCCEEEEE-ccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          102 MYLELVPGCLVLES-GTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       102 ~~~~~~~~~~vldi-G~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ...++++|++||.. |+|. |..+.++++..+  .+|++++.+++.++.+++    .|.+..++....|+.+ .+.....
T Consensus       161 ~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~-~~~~~~~  233 (353)
T 4dup_A          161 QMAGLTEGESVLIHGGTSGIGTTAIQLARAFG--AEVYATAGSTGKCEACER----LGAKRGINYRSEDFAA-VIKAETG  233 (353)
T ss_dssp             TTTCCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHH-HHHHHHS
T ss_pred             HhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----cCCCEEEeCCchHHHH-HHHHHhC
Confidence            45678999999999 4565 778888888763  589999999999998876    4644322211111111 0111112


Q ss_pred             CCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       180 ~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +++|+++.+...  ..++.+.+.|+++|+++.++
T Consensus       234 ~g~Dvvid~~g~--~~~~~~~~~l~~~G~iv~~g  265 (353)
T 4dup_A          234 QGVDIILDMIGA--AYFERNIASLAKDGCLSIIA  265 (353)
T ss_dssp             SCEEEEEESCCG--GGHHHHHHTEEEEEEEEECC
T ss_pred             CCceEEEECCCH--HHHHHHHHHhccCCEEEEEE
Confidence            579998876654  37889999999999998765

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=98.29  E-value=3e-07  Score=76.21  Aligned_cols=104  Identities=13%  Similarity=0.053  Sum_probs=68.7

Q ss_pred             HhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC-CC
Q 026506          102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-EF  178 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~  178 (237)
                      ...++++|++||..|+ |. |..+..++...  ..+|++++.+++.++.+++    .+.+..++....++.+ .+.. ..
T Consensus       156 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~-~~~~~~~  228 (354)
T 2j8z_A          156 LVGNVQAGDYVLIHAGLSGVGTAAIQLTRMA--GAIPLVTAGSQKKLQMAEK----LGAAAGFNYKKEDFSE-ATLKFTK  228 (354)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----HTCSEEEETTTSCHHH-HHHHHTT
T ss_pred             HhcCCCCCCEEEEECCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEecCChHHHH-HHHHHhc
Confidence            3567889999999984 54 77777777775  3589999999998888854    3543211111111110 0000 11


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ..++|+++.+....  .++.+.+.|+++|+++.++.
T Consensus       229 ~~~~d~vi~~~G~~--~~~~~~~~l~~~G~iv~~G~  262 (354)
T 2j8z_A          229 GAGVNLILDCIGGS--YWEKNVNCLALDGRWVLYGL  262 (354)
T ss_dssp             TSCEEEEEESSCGG--GHHHHHHHEEEEEEEEECCC
T ss_pred             CCCceEEEECCCch--HHHHHHHhccCCCEEEEEec
Confidence            14699988776653  78889999999999998763

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=98.29  E-value=3.9e-07  Score=74.81  Aligned_cols=100  Identities=15%  Similarity=0.148  Sum_probs=68.1

Q ss_pred             HhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC-CCC----
Q 026506          102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGF----  174 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~----  174 (237)
                      ...+++++++||..|+ |. |..+..++...  ..+|+++|.+++.++.+++    .+...  .+   |..+ ..+    
T Consensus       139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~----~g~~~--~~---d~~~~~~~~~~~  207 (333)
T 1v3u_A          139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQ----IGFDA--AF---NYKTVNSLEEAL  207 (333)
T ss_dssp             TTSCCCSSCEEEEESTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSE--EE---ETTSCSCHHHHH
T ss_pred             HhhCCCCCCEEEEecCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh----cCCcE--EE---ecCCHHHHHHHH
Confidence            4567889999999998 43 66777777765  3589999999988887744    35432  11   2221 111    


Q ss_pred             CCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          175 PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       175 ~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .....+++|+++.+...  ..++.+.+.|+++|++++++.
T Consensus       208 ~~~~~~~~d~vi~~~g~--~~~~~~~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          208 KKASPDGYDCYFDNVGG--EFLNTVLSQMKDFGKIAICGA  245 (333)
T ss_dssp             HHHCTTCEEEEEESSCH--HHHHHHHTTEEEEEEEEECCC
T ss_pred             HHHhCCCCeEEEECCCh--HHHHHHHHHHhcCCEEEEEec
Confidence            11111479998877664  368899999999999987753

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=98.25  E-value=4.2e-07  Score=75.37  Aligned_cols=106  Identities=9%  Similarity=0.121  Sum_probs=69.4

Q ss_pred             HhcCCCCC--CEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC
Q 026506          102 MYLELVPG--CLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE  177 (237)
Q Consensus       102 ~~~~~~~~--~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  177 (237)
                      ...+++++  ++||..|+ |. |..+.++++.. +..+|++++.+++.++.+++.   .|.+..++....++.+ .+...
T Consensus       152 ~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~-Ga~~Vi~~~~~~~~~~~~~~~---~g~~~~~d~~~~~~~~-~~~~~  226 (357)
T 2zb4_A          152 EKGHITAGSNKTMVVSGAAGACGSVAGQIGHFL-GCSRVVGICGTHEKCILLTSE---LGFDAAINYKKDNVAE-QLRES  226 (357)
T ss_dssp             HHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHT---SCCSEEEETTTSCHHH-HHHHH
T ss_pred             HhcCCCCCCccEEEEECCCcHHHHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHH---cCCceEEecCchHHHH-HHHHh
Confidence            56678999  99999998 54 77777777775 323899999999888777652   3543211111111110 01111


Q ss_pred             CCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       178 ~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ..+++|+++.+...  ..++.+.+.|+++|+++.++.
T Consensus       227 ~~~~~d~vi~~~G~--~~~~~~~~~l~~~G~iv~~G~  261 (357)
T 2zb4_A          227 CPAGVDVYFDNVGG--NISDTVISQMNENSHIILCGQ  261 (357)
T ss_dssp             CTTCEEEEEESCCH--HHHHHHHHTEEEEEEEEECCC
T ss_pred             cCCCCCEEEECCCH--HHHHHHHHHhccCcEEEEECC
Confidence            11369998876653  578999999999999997753

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.23  E-value=4.6e-06  Score=68.71  Aligned_cols=93  Identities=17%  Similarity=0.084  Sum_probs=62.8

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      +++|+++||+||++|+++..+++.   ..+|+++|..+ +-....      ..++ +++..+|......+.   +.+|+|
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r---g~~V~aVD~~~-l~~~l~------~~~~-V~~~~~d~~~~~~~~---~~~D~v  274 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGP-MAQSLM------DTGQ-VTWLREDGFKFRPTR---SNISWM  274 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT---TCEEEEECSSC-CCHHHH------TTTC-EEEECSCTTTCCCCS---SCEEEE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC---CCEEEEEEhhh-cChhhc------cCCC-eEEEeCccccccCCC---CCcCEE
Confidence            578999999999999999888776   37999999753 111111      1224 889999988643333   679999


Q ss_pred             EEeCCChh-chHHHHHhcccC---CCEEEEE
Q 026506          186 FLDLPQPW-LAIPSAKKMLKQ---DGILCSF  212 (237)
Q Consensus       186 ~~~~~~~~-~~l~~~~~~L~~---gG~l~~~  212 (237)
                      ++|+..+. ..++.+.+.|..   ++.++.+
T Consensus       275 vsDm~~~p~~~~~l~~~wl~~~~~~~aI~~l  305 (375)
T 4auk_A          275 VCDMVEKPAKVAALMAQWLVNGWCRETIFNL  305 (375)
T ss_dssp             EECCSSCHHHHHHHHHHHHHTTSCSEEEEEE
T ss_pred             EEcCCCChHHhHHHHHHHHhccccceEEEEE
Confidence            99986543 344444444443   3555544

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=98.13  E-value=4.9e-06  Score=65.78  Aligned_cols=110  Identities=15%  Similarity=0.080  Sum_probs=70.7

Q ss_pred             CCCCCCEEEEEcc------CccHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC
Q 026506          105 ELVPGCLVLESGT------GSGSLTTSLARAVAPT-GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE  177 (237)
Q Consensus       105 ~~~~~~~vldiG~------G~G~~~~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  177 (237)
                      .+.-+++|||+|+      .+|.   .+++.+.+. +.++++|+++-.           ...+  .++++|... ...  
T Consensus       106 ~vp~gmrVLDLGA~s~kg~APGS---~VLr~~~p~g~~VVavDL~~~~-----------sda~--~~IqGD~~~-~~~--  166 (344)
T 3r24_A          106 AVPYNMRVIHFGAGSDKGVAPGT---AVLRQWLPTGTLLVDSDLNDFV-----------SDAD--STLIGDCAT-VHT--  166 (344)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHH---HHHHHHSCTTCEEEEEESSCCB-----------CSSS--EEEESCGGG-EEE--
T ss_pred             eecCCCEEEeCCCCCCCCCCCcH---HHHHHhCCCCcEEEEeeCcccc-----------cCCC--eEEEccccc-ccc--
Confidence            3667999999997      6677   344445565 599999997621           1112  348899753 112  


Q ss_pred             CCCCCCEEEEeCCCh----------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHhcCccccc
Q 026506          178 FSGLADSIFLDLPQP----------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGKES  235 (237)
Q Consensus       178 ~~~~~D~v~~~~~~~----------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~v~~  235 (237)
                       +++||+|+.|+...                ..+++-+.+.|+|||.+++=....+. .+.+..++..|..|+.
T Consensus       167 -~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg-~~~L~~lrk~F~~VK~  238 (344)
T 3r24_A          167 -ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW-NADLYKLMGHFSWWTA  238 (344)
T ss_dssp             -SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC-CHHHHHHHTTEEEEEE
T ss_pred             -CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC-HHHHHHHHhhCCeEEE
Confidence             27799999987422                12456678899999999866544433 3344455556766543

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.09  E-value=1.2e-06  Score=69.53  Aligned_cols=113  Identities=16%  Similarity=0.107  Sum_probs=82.1

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC---CCCCCCCCCCCE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ---GFPDEFSGLADS  184 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~~~~D~  184 (237)
                      .+..+||+.+|||.+++..++.   ..+++.+|.++..++..++|++.   ..++++...|....   ..+.  ..+||+
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS~---~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l~~~--~~~fdL  162 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLRS---QDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLPP--PEKRGL  162 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSCT---TSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCSC--TTSCEE
T ss_pred             cCCCceeEeCCcHHHHHHHcCC---CCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHhcCC--CCCccE
Confidence            3567899999999999887763   37899999999999999998754   34589999997541   1121  146999


Q ss_pred             EEEeCCCh-hch----HHHHHh--cccCCCEEEEEeCCH--HHHHHHHHHHHh
Q 026506          185 IFLDLPQP-WLA----IPSAKK--MLKQDGILCSFSPCI--EQVQRSCESLRL  228 (237)
Q Consensus       185 v~~~~~~~-~~~----l~~~~~--~L~~gG~l~~~~~~~--~~~~~~~~~l~~  228 (237)
                      ||+|+|-. ...    ++.+.+  .+.++|+++++-|..  ...+++.+.|++
T Consensus       163 VfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~~~~~~l~~  215 (283)
T 2oo3_A          163 IFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMRE  215 (283)
T ss_dssp             EEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEeccchHHHHHHHHHHHh
Confidence            99999854 223    333332  345899999887765  556777777765

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=98.06  E-value=2.7e-06  Score=70.68  Aligned_cols=104  Identities=13%  Similarity=0.172  Sum_probs=71.5

Q ss_pred             HhcCCC-----CCCEEEEEc-cCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCC
Q 026506          102 MYLELV-----PGCLVLESG-TGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF  174 (237)
Q Consensus       102 ~~~~~~-----~~~~vldiG-~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~  174 (237)
                      ...+++     +|++||..| +|+ |.++.++++.+++ .+|++++.+++.++.+++    .|.+..++.. .|+.+ .+
T Consensus       160 ~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g-~~Vi~~~~~~~~~~~~~~----lGad~vi~~~-~~~~~-~v  232 (363)
T 4dvj_A          160 DRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTD-LTVIATASRPETQEWVKS----LGAHHVIDHS-KPLAA-EV  232 (363)
T ss_dssp             TTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCC-SEEEEECSSHHHHHHHHH----TTCSEEECTT-SCHHH-HH
T ss_pred             HhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHHHH----cCCCEEEeCC-CCHHH-HH
Confidence            345666     899999999 777 8888888887533 689999999999998876    5654322211 12111 11


Q ss_pred             CCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          175 PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       175 ~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .....+++|+|+.... ....++.+.+.|+++|+++.+.
T Consensus       233 ~~~~~~g~Dvvid~~g-~~~~~~~~~~~l~~~G~iv~~g  270 (363)
T 4dvj_A          233 AALGLGAPAFVFSTTH-TDKHAAEIADLIAPQGRFCLID  270 (363)
T ss_dssp             HTTCSCCEEEEEECSC-HHHHHHHHHHHSCTTCEEEECS
T ss_pred             HHhcCCCceEEEECCC-chhhHHHHHHHhcCCCEEEEEC
Confidence            1112257999775554 3347899999999999998763

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=98.06  E-value=1.5e-06  Score=72.24  Aligned_cols=101  Identities=14%  Similarity=0.256  Sum_probs=63.1

Q ss_pred             cCCCCC-CEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHH----HHHHHHHHHHcCCCCcEEEEE---ccccCCC
Q 026506          104 LELVPG-CLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQR----AASAREDFERTGVSSFVTVGV---RDIQGQG  173 (237)
Q Consensus       104 ~~~~~~-~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~----~~~a~~~~~~~~~~~~i~~~~---~d~~~~~  173 (237)
                      .++++| ++||..|+ |+ |.+++++++..+  .+++++..+++.    .+.++    .+|.+..++...   .|+.+ .
T Consensus       162 ~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~G--a~vi~~~~~~~~~~~~~~~~~----~lGa~~vi~~~~~~~~~~~~-~  234 (364)
T 1gu7_A          162 VKLTPGKDWFIQNGGTSAVGKYASQIGKLLN--FNSISVIRDRPNLDEVVASLK----ELGATQVITEDQNNSREFGP-T  234 (364)
T ss_dssp             SCCCTTTCEEEESCTTSHHHHHHHHHHHHHT--CEEEEEECCCTTHHHHHHHHH----HHTCSEEEEHHHHHCGGGHH-H
T ss_pred             hccCCCCcEEEECCCCcHHHHHHHHHHHHCC--CEEEEEecCccccHHHHHHHH----hcCCeEEEecCccchHHHHH-H
Confidence            478899 99999997 76 888899998874  467766544433    34443    357654233221   22221 1


Q ss_pred             CCCCC---CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          174 FPDEF---SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       174 ~~~~~---~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +...+   ++++|+||....... .. .+.+.|+++|+++.++
T Consensus       235 i~~~t~~~~~g~Dvvid~~G~~~-~~-~~~~~l~~~G~~v~~g  275 (364)
T 1gu7_A          235 IKEWIKQSGGEAKLALNCVGGKS-ST-GIARKLNNNGLMLTYG  275 (364)
T ss_dssp             HHHHHHHHTCCEEEEEESSCHHH-HH-HHHHTSCTTCEEEECC
T ss_pred             HHHHhhccCCCceEEEECCCchh-HH-HHHHHhccCCEEEEec
Confidence            11101   257999876655433 33 7789999999998765

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=97.98  E-value=4e-06  Score=69.28  Aligned_cols=102  Identities=16%  Similarity=0.127  Sum_probs=61.5

Q ss_pred             HhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ...++++|++||..|+ |. |..+.++++..+ ..+|++++ +++..+.++     .|.+..++ ...|+.+ .+....+
T Consensus       136 ~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g-~~~V~~~~-~~~~~~~~~-----~ga~~~~~-~~~~~~~-~~~~~~~  206 (349)
T 4a27_A          136 EVANLREGMSVLVHSAGGGVGQAVAQLCSTVP-NVTVFGTA-STFKHEAIK-----DSVTHLFD-RNADYVQ-EVKRISA  206 (349)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHTTST-TCEEEEEE-CGGGHHHHG-----GGSSEEEE-TTSCHHH-HHHHHCT
T ss_pred             HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcC-CcEEEEeC-CHHHHHHHH-----cCCcEEEc-CCccHHH-HHHHhcC
Confidence            4567899999999998 55 777777777653 46888888 555555543     35443222 1122211 1111122


Q ss_pred             CCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       180 ~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +++|+||......  .++.+.+.|+++|++++++.
T Consensus       207 ~g~Dvv~d~~g~~--~~~~~~~~l~~~G~~v~~G~  239 (349)
T 4a27_A          207 EGVDIVLDCLCGD--NTGKGLSLLKPLGTYILYGS  239 (349)
T ss_dssp             TCEEEEEEECC---------CTTEEEEEEEEEEC-
T ss_pred             CCceEEEECCCch--hHHHHHHHhhcCCEEEEECC
Confidence            5799988766543  34889999999999998864

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=97.93  E-value=4.7e-06  Score=63.04  Aligned_cols=103  Identities=19%  Similarity=0.211  Sum_probs=66.4

Q ss_pred             hcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC-CCC
Q 026506          103 YLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-EFS  179 (237)
Q Consensus       103 ~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~  179 (237)
                      ..+++++++||..|+ |. |..+..++...+  .+|++++.+++..+.+++    .+....++....+..+ .+.. ...
T Consensus        33 ~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G--~~V~~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~-~~~~~~~~  105 (198)
T 1pqw_A           33 VGRLSPGERVLIHSATGGVGMAAVSIAKMIG--ARIYTTAGSDAKREMLSR----LGVEYVGDSRSVDFAD-EILELTDG  105 (198)
T ss_dssp             TSCCCTTCEEEETTTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHT----TCCSEEEETTCSTHHH-HHHHHTTT
T ss_pred             HhCCCCCCEEEEeeCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCCCEEeeCCcHHHHH-HHHHHhCC
Confidence            457889999999994 43 667777777653  589999999988776654    3543211111111110 0000 011


Q ss_pred             CCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       180 ~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .++|+++.+...  ..++.+.+.|+++|+++.++.
T Consensus       106 ~~~D~vi~~~g~--~~~~~~~~~l~~~G~~v~~g~  138 (198)
T 1pqw_A          106 YGVDVVLNSLAG--EAIQRGVQILAPGGRFIELGK  138 (198)
T ss_dssp             CCEEEEEECCCT--HHHHHHHHTEEEEEEEEECSC
T ss_pred             CCCeEEEECCch--HHHHHHHHHhccCCEEEEEcC
Confidence            469998876642  478999999999999997753

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.92  E-value=4.1e-05  Score=61.75  Aligned_cols=54  Identities=22%  Similarity=0.294  Sum_probs=44.9

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG  157 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~  157 (237)
                      ++.... .+++.|||++||+|..+..++..   ..+++++|+++.+++.|++++....
T Consensus       228 ~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~---g~~~~g~e~~~~~~~~a~~r~~~~~  281 (297)
T 2zig_A          228 LVRMFS-FVGDVVLDPFAGTGTTLIAAARW---GRRALGVELVPRYAQLAKERFAREV  281 (297)
T ss_dssp             HHHHHC-CTTCEEEETTCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred             HHHHhC-CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHHhc
Confidence            444444 68999999999999999887664   3689999999999999999987653

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=97.90  E-value=1.3e-05  Score=66.90  Aligned_cols=101  Identities=13%  Similarity=0.108  Sum_probs=69.1

Q ss_pred             CCCCCEEEEEc-cCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCC
Q 026506          106 LVPGCLVLESG-TGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLAD  183 (237)
Q Consensus       106 ~~~~~~vldiG-~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D  183 (237)
                      +++|++||..| +|+ |..+.++++..+  .+|++++ +++..+.+++    .|.+..++....|+.+ .+..  ..++|
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~G--a~Vi~~~-~~~~~~~~~~----lGa~~v~~~~~~~~~~-~~~~--~~g~D  250 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAWD--AHVTAVC-SQDASELVRK----LGADDVIDYKSGSVEE-QLKS--LKPFD  250 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEE-CGGGHHHHHH----TTCSEEEETTSSCHHH-HHHT--SCCBS
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCC--CEEEEEe-ChHHHHHHHH----cCCCEEEECCchHHHH-HHhh--cCCCC
Confidence            78999999999 576 888888888863  5889888 6777777654    5654322211112111 1111  14699


Q ss_pred             EEEEeCCChhchHHHHHhcccCCCEEEEEeCCH
Q 026506          184 SIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       184 ~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                      +||.........++.+.+.|+++|+++.++...
T Consensus       251 ~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~  283 (375)
T 2vn8_A          251 FILDNVGGSTETWAPDFLKKWSGATYVTLVTPF  283 (375)
T ss_dssp             EEEESSCTTHHHHGGGGBCSSSCCEEEESCCSH
T ss_pred             EEEECCCChhhhhHHHHHhhcCCcEEEEeCCCc
Confidence            988777665456788999999999999887543

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=97.89  E-value=1.3e-05  Score=65.62  Aligned_cols=101  Identities=14%  Similarity=0.039  Sum_probs=69.0

Q ss_pred             hcCCCCCC-EEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          103 YLELVPGC-LVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       103 ~~~~~~~~-~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ..++++++ +||..|+ |. |..+.++++..+  .++++++.+++.++.+++    .|.+..++....+ . ........
T Consensus       143 ~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G--a~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~-~-~~~~~~~~  214 (328)
T 1xa0_A          143 EHGLTPERGPVLVTGATGGVGSLAVSMLAKRG--YTVEASTGKAAEHDYLRV----LGAKEVLAREDVM-A-ERIRPLDK  214 (328)
T ss_dssp             HTTCCGGGCCEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCTTCHHHHHH----TTCSEEEECC-----------CCS
T ss_pred             hcCCCCCCceEEEecCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH----cCCcEEEecCCcH-H-HHHHHhcC
Confidence            45678886 8999997 66 888888888864  479999999888888865    5654423322211 1 11111112


Q ss_pred             CCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       180 ~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +++|+||.....  ..++.+.+.|+++|+++.++
T Consensus       215 ~~~d~vid~~g~--~~~~~~~~~l~~~G~~v~~G  246 (328)
T 1xa0_A          215 QRWAAAVDPVGG--RTLATVLSRMRYGGAVAVSG  246 (328)
T ss_dssp             CCEEEEEECSTT--TTHHHHHHTEEEEEEEEECS
T ss_pred             CcccEEEECCcH--HHHHHHHHhhccCCEEEEEe
Confidence            579998876655  37899999999999999775

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=97.88  E-value=0.0001  Score=60.92  Aligned_cols=104  Identities=12%  Similarity=0.158  Sum_probs=63.0

Q ss_pred             HhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHH---HHHHHHHHHHHcCCCCcEEEEEccccC-CCCC
Q 026506          102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQ---RAASAREDFERTGVSSFVTVGVRDIQG-QGFP  175 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~---~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~  175 (237)
                      ...++++|++||.+|+ |+ |.+++++++..+ ...+.+++.++.   ..+.+++    .|.+..++....+... ....
T Consensus       161 ~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~G-a~vi~~~~~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~  235 (357)
T 1zsy_A          161 DFEQLQPGDSVIQNASNSGVGQAVIQIAAALG-LRTINVVRDRPDIQKLSDRLKS----LGAEHVITEEELRRPEMKNFF  235 (357)
T ss_dssp             HSSCCCTTCEEEESSTTSHHHHHHHHHHHHHT-CEEEEEECCCSCHHHHHHHHHH----TTCSEEEEHHHHHSGGGGGTT
T ss_pred             HHhccCCCCEEEEeCCcCHHHHHHHHHHHHcC-CEEEEEecCccchHHHHHHHHh----cCCcEEEecCcchHHHHHHHH
Confidence            3457899999999997 66 888999998874 244555555432   3455544    5765423221111111 0111


Q ss_pred             CCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          176 DEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       176 ~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .. .+++|+||-....+  ....+.+.|+++|+++.++
T Consensus       236 ~~-~~~~Dvvid~~g~~--~~~~~~~~l~~~G~iv~~G  270 (357)
T 1zsy_A          236 KD-MPQPRLALNCVGGK--SSTELLRQLARGGTMVTYG  270 (357)
T ss_dssp             SS-SCCCSEEEESSCHH--HHHHHHTTSCTTCEEEECC
T ss_pred             hC-CCCceEEEECCCcH--HHHHHHHhhCCCCEEEEEe
Confidence            10 02599977655533  3356889999999999774

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=97.86  E-value=3.6e-06  Score=69.23  Aligned_cols=105  Identities=13%  Similarity=0.119  Sum_probs=69.9

Q ss_pred             HHhcCCCCCCEEEEEccCc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC-C
Q 026506          101 IMYLELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-E  177 (237)
Q Consensus       101 ~~~~~~~~~~~vldiG~G~--G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~  177 (237)
                      ....++++|++||.+|+|+  |..+.++++..+  .+|++++.+++.++.+++    .|.+..++....|+.+ .+.. .
T Consensus       137 ~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~----lga~~~~~~~~~~~~~-~~~~~~  209 (340)
T 3gms_A          137 TETLNLQRNDVLLVNACGSAIGHLFAQLSQILN--FRLIAVTRNNKHTEELLR----LGAAYVIDTSTAPLYE-TVMELT  209 (340)
T ss_dssp             HTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHH----HTCSEEEETTTSCHHH-HHHHHT
T ss_pred             HHhcccCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----CCCcEEEeCCcccHHH-HHHHHh
Confidence            3556889999999999973  778888888763  589999999998888876    4654322211112111 0000 1


Q ss_pred             CCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       178 ~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .+.++|+|+.+....  ......+.|+++|+++.++.
T Consensus       210 ~~~g~Dvvid~~g~~--~~~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          210 NGIGADAAIDSIGGP--DGNELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             TTSCEEEEEESSCHH--HHHHHHHTEEEEEEEEECCC
T ss_pred             CCCCCcEEEECCCCh--hHHHHHHHhcCCCEEEEEee
Confidence            124799987666543  23455689999999998753

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=97.85  E-value=1.5e-05  Score=65.27  Aligned_cols=101  Identities=14%  Similarity=0.071  Sum_probs=70.5

Q ss_pred             hcCCCCCC-EEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          103 YLELVPGC-LVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       103 ~~~~~~~~-~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ..++++++ +||..|+ |. |..+.++++..+  .++++++.+++.++.+++    .|.+..++....+ . ........
T Consensus       144 ~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G--a~vi~~~~~~~~~~~~~~----lGa~~v~~~~~~~-~-~~~~~~~~  215 (330)
T 1tt7_A          144 QNGLSPEKGSVLVTGATGGVGGIAVSMLNKRG--YDVVASTGNREAADYLKQ----LGASEVISREDVY-D-GTLKALSK  215 (330)
T ss_dssp             HTTCCGGGCCEEEESTTSHHHHHHHHHHHHHT--CCEEEEESSSSTHHHHHH----HTCSEEEEHHHHC-S-SCCCSSCC
T ss_pred             hcCcCCCCceEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCcEEEECCCch-H-HHHHHhhc
Confidence            45678886 9999997 66 888888888874  469999999888888876    4654323221111 1 11111122


Q ss_pred             CCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       180 ~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +++|+|+.....  ..++.+.+.|+++|+++.++
T Consensus       216 ~~~d~vid~~g~--~~~~~~~~~l~~~G~iv~~G  247 (330)
T 1tt7_A          216 QQWQGAVDPVGG--KQLASLLSKIQYGGSVAVSG  247 (330)
T ss_dssp             CCEEEEEESCCT--HHHHHHHTTEEEEEEEEECC
T ss_pred             CCccEEEECCcH--HHHHHHHHhhcCCCEEEEEe
Confidence            579998766655  37899999999999998775

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.80  E-value=6.5e-05  Score=61.88  Aligned_cols=72  Identities=14%  Similarity=0.042  Sum_probs=57.0

Q ss_pred             ccHHHHHHhcCCCC------CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q 026506           95 ADISFVIMYLELVP------GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD  168 (237)
Q Consensus        95 ~~~~~~~~~~~~~~------~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d  168 (237)
                      ..+..+++.+++.+      ++.|||||.|.|.++..++.... ..+++++|+++..+...++.. .  . .+++++.+|
T Consensus        39 ~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~-~--~-~~l~ii~~D  113 (353)
T 1i4w_A           39 TVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKF-E--G-SPLQILKRD  113 (353)
T ss_dssp             HHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHT-T--T-SSCEEECSC
T ss_pred             HHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhc-c--C-CCEEEEECC
Confidence            33445777777653      68999999999999999998742 368999999999999988865 2  2 349999999


Q ss_pred             ccC
Q 026506          169 IQG  171 (237)
Q Consensus       169 ~~~  171 (237)
                      +..
T Consensus       114 ~l~  116 (353)
T 1i4w_A          114 PYD  116 (353)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            965

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=97.78  E-value=1.6e-05  Score=64.87  Aligned_cols=102  Identities=17%  Similarity=0.199  Sum_probs=68.8

Q ss_pred             hcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC-CCC
Q 026506          103 YLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-EFS  179 (237)
Q Consensus       103 ~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~  179 (237)
                      ..+++++++||..|+ |. |..+.++++..+  .+|++++.+++.++.+++    .+.+..++....+..+ .+.. ...
T Consensus       135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G--~~V~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~-~~~~~~~~  207 (327)
T 1qor_A          135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGTAQKAQSALK----AGAWQVINYREEDLVE-RLKEITGG  207 (327)
T ss_dssp             TSCCCTTCEEEESSTTBHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHH-HHHHHTTT
T ss_pred             hhCCCCCCEEEEECCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCCCEEEECCCccHHH-HHHHHhCC
Confidence            567889999999994 44 777777777763  589999999998888876    3543211111111110 0000 011


Q ss_pred             CCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       180 ~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .++|+++.+..  ...++.+.+.|+++|+++.++
T Consensus       208 ~~~D~vi~~~g--~~~~~~~~~~l~~~G~iv~~g  239 (327)
T 1qor_A          208 KKVRVVYDSVG--RDTWERSLDCLQRRGLMVSFG  239 (327)
T ss_dssp             CCEEEEEECSC--GGGHHHHHHTEEEEEEEEECC
T ss_pred             CCceEEEECCc--hHHHHHHHHHhcCCCEEEEEe
Confidence            46999887766  458899999999999998775

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=97.74  E-value=1.1e-06  Score=73.56  Aligned_cols=90  Identities=9%  Similarity=0.043  Sum_probs=56.3

Q ss_pred             CCCCEEEEE--ccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC-CCCC
Q 026506          107 VPGCLVLES--GTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF-SGLA  182 (237)
Q Consensus       107 ~~~~~vldi--G~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~~~~  182 (237)
                      ++|++||.+  |+|. |.++.++++..+  .+|++++.+++.++.+++    .|.+..++....|+.+ .+...+ +.++
T Consensus       169 ~~g~~vlV~gag~G~vG~~a~q~a~~~G--a~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~-~v~~~t~~~g~  241 (379)
T 3iup_A          169 LEGHSALVHTAAASNLGQMLNQICLKDG--IKLVNIVRKQEQADLLKA----QGAVHVCNAASPTFMQ-DLTEALVSTGA  241 (379)
T ss_dssp             HTTCSCEEESSTTSHHHHHHHHHHHHHT--CCEEEEESSHHHHHHHHH----TTCSCEEETTSTTHHH-HHHHHHHHHCC
T ss_pred             cCCCEEEEECCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHh----CCCcEEEeCCChHHHH-HHHHHhcCCCc
Confidence            789999999  5665 777888888874  479999999999998876    5765533322222211 011000 1369


Q ss_pred             CEEEEeCCChhchHHHHHhccc
Q 026506          183 DSIFLDLPQPWLAIPSAKKMLK  204 (237)
Q Consensus       183 D~v~~~~~~~~~~l~~~~~~L~  204 (237)
                      |+||.....+ ..++.+.+.|+
T Consensus       242 d~v~d~~g~~-~~~~~~~~~l~  262 (379)
T 3iup_A          242 TIAFDATGGG-KLGGQILTCME  262 (379)
T ss_dssp             CEEEESCEEE-SHHHHHHHHHH
T ss_pred             eEEEECCCch-hhHHHHHHhcc
Confidence            9977554432 24555555554

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=97.71  E-value=1.6e-05  Score=65.51  Aligned_cols=102  Identities=18%  Similarity=0.241  Sum_probs=69.1

Q ss_pred             HhcCCC------CCCEEEEE-ccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC
Q 026506          102 MYLELV------PGCLVLES-GTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG  173 (237)
Q Consensus       102 ~~~~~~------~~~~vldi-G~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~  173 (237)
                      ...+++      +|++||.. |+|+ |..+.++++..+  .+|++++.+++.++.+++    .|.+..++. ..|+.+ .
T Consensus       138 ~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~----lGa~~vi~~-~~~~~~-~  209 (346)
T 3fbg_A          138 DVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYG--LRVITTASRNETIEWTKK----MGADIVLNH-KESLLN-Q  209 (346)
T ss_dssp             TTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEECCSHHHHHHHHH----HTCSEEECT-TSCHHH-H
T ss_pred             HhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----cCCcEEEEC-CccHHH-H
Confidence            345666      89999999 5777 888888888763  589999999999998887    464431211 111111 0


Q ss_pred             CCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEE
Q 026506          174 FPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       174 ~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                      +.....+++|+|+.... ....++.+.+.|+++|+++.+
T Consensus       210 ~~~~~~~g~Dvv~d~~g-~~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          210 FKTQGIELVDYVFCTFN-TDMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             HHHHTCCCEEEEEESSC-HHHHHHHHHHHEEEEEEEEES
T ss_pred             HHHhCCCCccEEEECCC-chHHHHHHHHHhccCCEEEEE
Confidence            11111257999775554 344789999999999999755

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=97.71  E-value=1.2e-05  Score=66.15  Aligned_cols=100  Identities=17%  Similarity=0.186  Sum_probs=68.6

Q ss_pred             HhcCCCCCCEEEEEc-cCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC-CC
Q 026506          102 MYLELVPGCLVLESG-TGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-EF  178 (237)
Q Consensus       102 ~~~~~~~~~~vldiG-~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~  178 (237)
                      ...++++|++||.+| +|+ |..+.++++..+  .+|+++ .+++.++.+++    .|.+. ++ ...|+.+ .... ..
T Consensus       144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~G--a~Vi~~-~~~~~~~~~~~----lGa~~-i~-~~~~~~~-~~~~~~~  213 (343)
T 3gaz_A          144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALARG--ARVFAT-ARGSDLEYVRD----LGATP-ID-ASREPED-YAAEHTA  213 (343)
T ss_dssp             TTTCCCTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEE-ECHHHHHHHHH----HTSEE-EE-TTSCHHH-HHHHHHT
T ss_pred             HhcCCCCCCEEEEecCCCHHHHHHHHHHHHCC--CEEEEE-eCHHHHHHHHH----cCCCE-ec-cCCCHHH-HHHHHhc
Confidence            556789999999999 566 888888888763  589999 88888888766    46432 22 1111111 0000 11


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +.++|+|+.....  ..++.+.+.|+++|+++.++
T Consensus       214 ~~g~D~vid~~g~--~~~~~~~~~l~~~G~iv~~g  246 (343)
T 3gaz_A          214 GQGFDLVYDTLGG--PVLDASFSAVKRFGHVVSCL  246 (343)
T ss_dssp             TSCEEEEEESSCT--HHHHHHHHHEEEEEEEEESC
T ss_pred             CCCceEEEECCCc--HHHHHHHHHHhcCCeEEEEc
Confidence            2479998876654  47899999999999998664

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=97.71  E-value=1.5e-05  Score=65.66  Aligned_cols=105  Identities=14%  Similarity=0.124  Sum_probs=69.9

Q ss_pred             HhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cccCCCCCCCC
Q 026506          102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPDEF  178 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~  178 (237)
                      ...++++|++||..|+ |. |..+.++++..+  .+|++++.+++.++.+++.   .|.+..++.... ++.+ .+....
T Consensus       149 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G--~~V~~~~~~~~~~~~~~~~---~g~~~~~d~~~~~~~~~-~~~~~~  222 (345)
T 2j3h_A          149 EVCSPKEGETVYVSAASGAVGQLVGQLAKMMG--CYVVGSAGSKEKVDLLKTK---FGFDDAFNYKEESDLTA-ALKRCF  222 (345)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHT---SCCSEEEETTSCSCSHH-HHHHHC
T ss_pred             HHhCCCCCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHH---cCCceEEecCCHHHHHH-HHHHHh
Confidence            4567889999999997 54 777888887753  5899999999988887632   454321111100 1110 011111


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .+++|+++.+...  ..++.+.+.|+++|++++++.
T Consensus       223 ~~~~d~vi~~~g~--~~~~~~~~~l~~~G~~v~~G~  256 (345)
T 2j3h_A          223 PNGIDIYFENVGG--KMLDAVLVNMNMHGRIAVCGM  256 (345)
T ss_dssp             TTCEEEEEESSCH--HHHHHHHTTEEEEEEEEECCC
T ss_pred             CCCCcEEEECCCH--HHHHHHHHHHhcCCEEEEEcc
Confidence            2469998876654  488999999999999987753

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=97.68  E-value=2.5e-05  Score=63.03  Aligned_cols=94  Identities=19%  Similarity=0.228  Sum_probs=66.8

Q ss_pred             CCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-ccccCCCCCCCCCCCC
Q 026506          106 LVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV-RDIQGQGFPDEFSGLA  182 (237)
Q Consensus       106 ~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~~~~  182 (237)
                      +++|++||.+|+ |. |..+.++++..+  .+|++++.+++.++.+++    .|.+..++... .|+.+ .+     +++
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~----~ga~~~~~~~~~~~~~~-~~-----~~~  190 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRPEKLALPLA----LGAEEAATYAEVPERAK-AW-----GGL  190 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSGGGSHHHHH----TTCSEEEEGGGHHHHHH-HT-----TSE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHh----cCCCEEEECCcchhHHH-Hh-----cCc
Confidence            889999999998 55 778888888763  589999999998888765    46543122111 12211 11     469


Q ss_pred             CEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          183 DSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       183 D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      |+|+. .+.  ..++.+.+.|+++|+++.++.
T Consensus       191 d~vid-~g~--~~~~~~~~~l~~~G~~v~~g~  219 (302)
T 1iz0_A          191 DLVLE-VRG--KEVEESLGLLAHGGRLVYIGA  219 (302)
T ss_dssp             EEEEE-CSC--TTHHHHHTTEEEEEEEEEC--
T ss_pred             eEEEE-CCH--HHHHHHHHhhccCCEEEEEeC
Confidence            99887 655  588999999999999987653

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.67  E-value=4.3e-05  Score=54.33  Aligned_cols=64  Identities=19%  Similarity=0.217  Sum_probs=45.6

Q ss_pred             CCCCEEEEEccCcc-HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          107 VPGCLVLESGTGSG-SLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       107 ~~~~~vldiG~G~G-~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      .++.+|||+|||+| ..+..+++..  ...|+++|+++..++                ++..|+++.....  -..||+|
T Consensus        34 ~~~~rVlEVG~G~g~~vA~~La~~~--g~~V~atDInp~Av~----------------~v~dDiF~P~~~~--Y~~~DLI   93 (153)
T 2k4m_A           34 GPGTRVVEVGAGRFLYVSDYIRKHS--KVDLVLTDIKPSHGG----------------IVRDDITSPRMEI--YRGAALI   93 (153)
T ss_dssp             CSSSEEEEETCTTCCHHHHHHHHHS--CCEEEEECSSCSSTT----------------EECCCSSSCCHHH--HTTEEEE
T ss_pred             CCCCcEEEEccCCChHHHHHHHHhC--CCeEEEEECCccccc----------------eEEccCCCCcccc--cCCcCEE
Confidence            55689999999999 5888888753  468999999886544                6778887522210  0369998


Q ss_pred             E-EeCC
Q 026506          186 F-LDLP  190 (237)
Q Consensus       186 ~-~~~~  190 (237)
                      + +++|
T Consensus        94 YsirPP   99 (153)
T 2k4m_A           94 YSIRPP   99 (153)
T ss_dssp             EEESCC
T ss_pred             EEcCCC
Confidence            5 4544

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=97.64  E-value=9e-06  Score=74.25  Aligned_cols=101  Identities=18%  Similarity=0.202  Sum_probs=63.9

Q ss_pred             cCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCC
Q 026506          104 LELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL  181 (237)
Q Consensus       104 ~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  181 (237)
                      .++++|++||..|+ |. |..++++++..+  .+|++++.++ ..+.++     .+.+..++....|+.+.......+.+
T Consensus       341 a~l~~G~~VLI~gaaGgvG~~aiqlAk~~G--a~V~~t~~~~-k~~~l~-----lga~~v~~~~~~~~~~~i~~~t~g~G  412 (795)
T 3slk_A          341 AGLRPGESLLVHSAAGGVGMAAIQLARHLG--AEVYATASED-KWQAVE-----LSREHLASSRTCDFEQQFLGATGGRG  412 (795)
T ss_dssp             TCCCTTCCEEEESTTBHHHHHHHHHHHHTT--CCEEEECCGG-GGGGSC-----SCGGGEECSSSSTHHHHHHHHSCSSC
T ss_pred             hCCCCCCEEEEecCCCHHHHHHHHHHHHcC--CEEEEEeChH-Hhhhhh-----cChhheeecCChhHHHHHHHHcCCCC
Confidence            46789999999995 65 888999999874  4788888654 222221     34333122212222210001111247


Q ss_pred             CCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          182 ADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       182 ~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +|+|+.....  +.++..++.|+++|+++.++.
T Consensus       413 vDvVld~~gg--~~~~~~l~~l~~~Gr~v~iG~  443 (795)
T 3slk_A          413 VDVVLNSLAG--EFADASLRMLPRGGRFLELGK  443 (795)
T ss_dssp             CSEEEECCCT--TTTHHHHTSCTTCEEEEECCS
T ss_pred             eEEEEECCCc--HHHHHHHHHhcCCCEEEEecc
Confidence            9998865543  478999999999999998753

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=97.64  E-value=0.00014  Score=58.44  Aligned_cols=120  Identities=21%  Similarity=0.226  Sum_probs=71.1

Q ss_pred             CCCCEEEEEccCccHHHHHHH---HHhCCCcE--EEEEeCCH--------H-HHHHHHHHHHHc----CCCCcEEEEEcc
Q 026506          107 VPGCLVLESGTGSGSLTTSLA---RAVAPTGH--VYTFDFHE--------Q-RAASAREDFERT----GVSSFVTVGVRD  168 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~---~~~~~~~~--v~~vD~~~--------~-~~~~a~~~~~~~----~~~~~i~~~~~d  168 (237)
                      ++.-+|+|+|-|+|.......   ...++..+  ++.+|..+        + ..+..+......    +-.-.+++..+|
T Consensus        95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD  174 (308)
T 3vyw_A           95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD  174 (308)
T ss_dssp             CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred             CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence            344689999999998654433   22344444  45666421        1 112222222211    111124667788


Q ss_pred             ccCCCCCCCCCCCCCEEEEeCCCh------h--chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCc
Q 026506          169 IQGQGFPDEFSGLADSIFLDLPQP------W--LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT  231 (237)
Q Consensus       169 ~~~~~~~~~~~~~~D~v~~~~~~~------~--~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~  231 (237)
                      +.+ .++......+|++++|.-.|      |  ++++.+.+.++|||+++.|+...    .+.+.|++ ||.
T Consensus       175 a~~-~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYtaag----~VRR~L~~aGF~  241 (308)
T 3vyw_A          175 ARK-RIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYSSSL----SVRKSLLTLGFK  241 (308)
T ss_dssp             HHH-HGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESCCCH----HHHHHHHHTTCE
T ss_pred             HHH-HHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEeCcH----HHHHHHHHCCCE
Confidence            864 22221125799999986322      3  58999999999999999888633    34456666 775

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=97.63  E-value=1.8e-05  Score=65.38  Aligned_cols=102  Identities=16%  Similarity=0.106  Sum_probs=67.5

Q ss_pred             hcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC-CCC
Q 026506          103 YLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-EFS  179 (237)
Q Consensus       103 ~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~  179 (237)
                      ..+++++++||..|+ |. |..+.++++..+  .+|++++.+++.++.+++    .+.+..++....++.+ .+.. ...
T Consensus       165 ~~~~~~g~~vlV~GasggiG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~----~ga~~~~d~~~~~~~~-~~~~~~~~  237 (351)
T 1yb5_A          165 SACVKAGESVLVHGASGGVGLAACQIARAYG--LKILGTAGTEEGQKIVLQ----NGAHEVFNHREVNYID-KIKKYVGE  237 (351)
T ss_dssp             TSCCCTTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH----TTCSEEEETTSTTHHH-HHHHHHCT
T ss_pred             hhCCCCcCEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCChhHHHHHHH----cCCCEEEeCCCchHHH-HHHHHcCC
Confidence            567889999999997 44 777777777753  589999999998887755    4543211111111110 0000 011


Q ss_pred             CCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       180 ~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .++|+++.+...  ..++.+.+.|+++|+++.++
T Consensus       238 ~~~D~vi~~~G~--~~~~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          238 KGIDIIIEMLAN--VNLSKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             TCEEEEEESCHH--HHHHHHHHHEEEEEEEEECC
T ss_pred             CCcEEEEECCCh--HHHHHHHHhccCCCEEEEEe
Confidence            469998866553  36788999999999998765

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.56  E-value=0.00019  Score=56.71  Aligned_cols=54  Identities=19%  Similarity=0.167  Sum_probs=43.5

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG  157 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~  157 (237)
                      ++... ..+++.|||.+||+|..+.+....   ..+++++|+++..++.+++++...+
T Consensus       205 ~i~~~-~~~~~~vlD~f~GsGtt~~~a~~~---gr~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          205 IIRAS-SNPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             HHHHH-CCTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC--
T ss_pred             HHHHh-CCCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHhcc
Confidence            44444 378999999999999999776654   3799999999999999999987654

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.55  E-value=0.00077  Score=55.95  Aligned_cols=103  Identities=14%  Similarity=0.116  Sum_probs=63.5

Q ss_pred             CCEEEEEccCccHHHHHHHH--------Hh------CCCcEEEEEeCCHHHHHHHHHHHHHcC-----------C--C-C
Q 026506          109 GCLVLESGTGSGSLTTSLAR--------AV------APTGHVYTFDFHEQRAASAREDFERTG-----------V--S-S  160 (237)
Q Consensus       109 ~~~vldiG~G~G~~~~~~~~--------~~------~~~~~v~~vD~~~~~~~~a~~~~~~~~-----------~--~-~  160 (237)
                      ..+|+|+|||+|..+..+..        ..      .+.-+|+..|+-.+-....=+.+....           .  . .
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            57999999999998877632        11      145688888876554433333222110           0  0 1


Q ss_pred             cEEEEEccccCCCCCCCCCCCCCEEEEeCCChh-------------------------------------------chHH
Q 026506          161 FVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPW-------------------------------------------LAIP  197 (237)
Q Consensus       161 ~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~-------------------------------------------~~l~  197 (237)
                      -+.-..+.+-...+|.   +.+|+|+.+..-+|                                           .+|+
T Consensus       133 f~~gvpgSFy~rlfP~---~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~  209 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPA---RTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLR  209 (374)
T ss_dssp             EEEEEESCTTSCCSCT---TCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCCC---cceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            1223344554455666   88999997654333                                           1356


Q ss_pred             HHHhcccCCCEEEEEeC
Q 026506          198 SAKKMLKQDGILCSFSP  214 (237)
Q Consensus       198 ~~~~~L~~gG~l~~~~~  214 (237)
                      ...+.|+|||++++...
T Consensus       210 ~ra~eL~pGG~mvl~~~  226 (374)
T 3b5i_A          210 ARAAEVKRGGAMFLVCL  226 (374)
T ss_dssp             HHHHHEEEEEEEEEEEE
T ss_pred             HHHHHhCCCCEEEEEEe
Confidence            66999999999986643

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.42  E-value=0.0005  Score=57.17  Aligned_cols=76  Identities=17%  Similarity=0.100  Sum_probs=44.2

Q ss_pred             CCEEEEEccCccHHHHHHHHH----h------------CCCcEEEEEeCC-----------HHHHHHHHHHHHHcCCCCc
Q 026506          109 GCLVLESGTGSGSLTTSLARA----V------------APTGHVYTFDFH-----------EQRAASAREDFERTGVSSF  161 (237)
Q Consensus       109 ~~~vldiG~G~G~~~~~~~~~----~------------~~~~~v~~vD~~-----------~~~~~~a~~~~~~~~~~~~  161 (237)
                      ..+|+|+||++|..+..+...    +            .+.-+|+..|+-           +.+.+.+++   ..+....
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENGRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTCCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hccCCCC
Confidence            579999999999988876654    1            134567788875           222322222   1221111


Q ss_pred             EEEE---EccccCCCCCCCCCCCCCEEEEeCC
Q 026506          162 VTVG---VRDIQGQGFPDEFSGLADSIFLDLP  190 (237)
Q Consensus       162 i~~~---~~d~~~~~~~~~~~~~~D~v~~~~~  190 (237)
                      --+.   .+.+-...+|.   +.+|+|+.+..
T Consensus       130 ~~f~~gvpgSFy~rlfp~---~S~d~v~Ss~a  158 (384)
T 2efj_A          130 SCLIGAMPGSFYSRLFPE---ESMHFLHSCYC  158 (384)
T ss_dssp             SEEEEECCSCTTSCCSCT---TCEEEEEEESC
T ss_pred             ceEEEecchhhhhccCCC---CceEEEEecce
Confidence            1223   34444455666   78999987654

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.27  E-value=0.004  Score=50.80  Aligned_cols=111  Identities=12%  Similarity=0.114  Sum_probs=73.4

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL  187 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~  187 (237)
                      .+.+++|+.||.|+++..+...  +...++++|+++.+.+..+.|....     .   .+|+.+.....  ...+|+++.
T Consensus        10 ~~~~~~dLFaG~Gg~~~g~~~a--G~~~v~~~e~d~~a~~t~~~N~~~~-----~---~~Di~~~~~~~--~~~~D~l~~   77 (327)
T 2c7p_A           10 TGLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEK-----P---EGDITQVNEKT--IPDHDILCA   77 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCC-----C---BSCGGGSCGGG--SCCCSEEEE
T ss_pred             CCCcEEEECCCcCHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHcCCC-----C---cCCHHHcCHhh--CCCCCEEEE
Confidence            3579999999999999887664  3467899999999999999886321     1   57776522111  145999998


Q ss_pred             eCCChh---------------ch---HHHHHhcccCCCEEEEEeCCH------HHHHHHHHHHHh-cC
Q 026506          188 DLPQPW---------------LA---IPSAKKMLKQDGILCSFSPCI------EQVQRSCESLRL-NF  230 (237)
Q Consensus       188 ~~~~~~---------------~~---l~~~~~~L~~gG~l~~~~~~~------~~~~~~~~~l~~-~f  230 (237)
                      ++|+..               .+   +-++.+.++|.-.++=.++..      ...+.+++.|++ |+
T Consensus        78 gpPCQ~fS~ag~~~g~~d~r~~L~~~~~r~i~~~~P~~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY  145 (327)
T 2c7p_A           78 GFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDY  145 (327)
T ss_dssp             ECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTB
T ss_pred             CCCCCCcchhcccCCCcchhhHHHHHHHHHHHhccCcEEEEeCcHHHHhccccHHHHHHHHHHHhCCC
Confidence            877431               12   334455668875555344432      245667777777 54

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=97.22  E-value=5e-05  Score=62.63  Aligned_cols=104  Identities=9%  Similarity=0.112  Sum_probs=66.2

Q ss_pred             HHHhcCCCCC-CEEEEE-ccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC
Q 026506          100 VIMYLELVPG-CLVLES-GTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD  176 (237)
Q Consensus       100 ~~~~~~~~~~-~~vldi-G~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  176 (237)
                      ++.... .++ ++||.. |+|. |..+.++++..+  .+|++++.+++.++.+++    .|.+..++....|+.+ .+..
T Consensus       156 ~~~~~~-~~g~~~vli~gg~g~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~-~v~~  227 (349)
T 3pi7_A          156 MFDIVK-QEGEKAFVMTAGASQLCKLIIGLAKEEG--FRPIVTVRRDEQIALLKD----IGAAHVLNEKAPDFEA-TLRE  227 (349)
T ss_dssp             HHHHHH-HHCCSEEEESSTTSHHHHHHHHHHHHHT--CEEEEEESCGGGHHHHHH----HTCSEEEETTSTTHHH-HHHH
T ss_pred             HHHHHh-hCCCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCCEEEECCcHHHHH-HHHH
Confidence            334444 556 577765 6666 778888888873  489999999999988876    4654322211111111 0100


Q ss_pred             CC-CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          177 EF-SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       177 ~~-~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .+ +.++|+|+......  .++.+.+.|+++|+++.++
T Consensus       228 ~~~~~g~D~vid~~g~~--~~~~~~~~l~~~G~iv~~G  263 (349)
T 3pi7_A          228 VMKAEQPRIFLDAVTGP--LASAIFNAMPKRARWIIYG  263 (349)
T ss_dssp             HHHHHCCCEEEESSCHH--HHHHHHHHSCTTCEEEECC
T ss_pred             HhcCCCCcEEEECCCCh--hHHHHHhhhcCCCEEEEEe
Confidence            00 13699987665543  4588999999999999875

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=97.17  E-value=0.0018  Score=54.52  Aligned_cols=50  Identities=10%  Similarity=0.149  Sum_probs=43.6

Q ss_pred             CCCCCEEEEEccCccHHHHHHHH-HhCCCcEEEEEeCCHHHHHHHHHHHHH
Q 026506          106 LVPGCLVLESGTGSGSLTTSLAR-AVAPTGHVYTFDFHEQRAASAREDFER  155 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~-~~~~~~~v~~vD~~~~~~~~a~~~~~~  155 (237)
                      ++++..++|+|++.|..+..++. ..++.++|+++|++|...+.++++++.
T Consensus       224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~  274 (409)
T 2py6_A          224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  274 (409)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            47899999999999999988884 433347999999999999999999987

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.02  E-value=0.0022  Score=52.66  Aligned_cols=114  Identities=16%  Similarity=0.109  Sum_probs=72.4

Q ss_pred             CEEEEEccCccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506          110 CLVLESGTGSGSLTTSLARAVAP-TGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD  188 (237)
Q Consensus       110 ~~vldiG~G~G~~~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~  188 (237)
                      .+++|+.||.|+++..+... +. ...++++|+++.+++..+.|+.     + ..+..+|+.+..........+|+++.+
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~-G~~~~~v~~~E~d~~a~~~~~~N~~-----~-~~~~~~Di~~~~~~~~~~~~~D~l~~g   75 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNFP-----H-TQLLAKTIEGITLEEFDRLSFDMILMS   75 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCT-----T-SCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred             CeEEEeCcCccHHHHHHHHC-CCCceEEEEEeCCHHHHHHHHHhcc-----c-cccccCCHHHccHhHcCcCCcCEEEEc
Confidence            58999999999999888766 21 2479999999999999998753     2 235667876521111000268999998


Q ss_pred             CCChh---------------chHH---HHHhccc--CCCEEEEEeCCH---HHHHHHHHHHHh-cC
Q 026506          189 LPQPW---------------LAIP---SAKKMLK--QDGILCSFSPCI---EQVQRSCESLRL-NF  230 (237)
Q Consensus       189 ~~~~~---------------~~l~---~~~~~L~--~gG~l~~~~~~~---~~~~~~~~~l~~-~f  230 (237)
                      +|+..               .++.   ++.+.++  |.-.++=.++..   .....+++.|++ |+
T Consensus        76 pPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~l~~~~~~~~i~~~l~~~GY  141 (343)
T 1g55_A           76 PPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGF  141 (343)
T ss_dssp             CC------------------CHHHHHHHHGGGCSSCCSEEEEEEETTGGGSHHHHHHHHHHHHTTE
T ss_pred             CCCcchhhcCCcCCccCccchHHHHHHHHHHHhcCCCCEEEEeCCccccCHHHHHHHHHHHHHCCC
Confidence            87321               1233   3445556  664444334432   356677777777 54

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.94  E-value=0.0071  Score=42.68  Aligned_cols=101  Identities=19%  Similarity=0.162  Sum_probs=65.9

Q ss_pred             CCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCC-CCCCCCCCCEEE
Q 026506          109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF-PDEFSGLADSIF  186 (237)
Q Consensus       109 ~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~~D~v~  186 (237)
                      ..+|+.+|+|. |......+...  ...|+++|.+++.++.+++    .+    +.+..+|..+... .......+|.++
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~--g~~v~vid~~~~~~~~~~~----~g----~~~i~gd~~~~~~l~~a~i~~ad~vi   76 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLAS--DIPLVVIETSRTRVDELRE----RG----VRAVLGNAANEEIMQLAHLECAKWLI   76 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHH----TT----CEEEESCTTSHHHHHHTTGGGCSEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHH----cC----CCEEECCCCCHHHHHhcCcccCCEEE
Confidence            46899999987 55554444443  3689999999999887765    34    5667788765211 111114689999


Q ss_pred             EeCCChhch--HHHHHhcccCCCEEEEEeCCHHHH
Q 026506          187 LDLPQPWLA--IPSAKKMLKQDGILCSFSPCIEQV  219 (237)
Q Consensus       187 ~~~~~~~~~--l~~~~~~L~~gG~l~~~~~~~~~~  219 (237)
                      +..+.....  +....+.+.|+..++.-.......
T Consensus        77 ~~~~~~~~n~~~~~~a~~~~~~~~iiar~~~~~~~  111 (140)
T 3fwz_A           77 LTIPNGYEAGEIVASARAKNPDIEIIARAHYDDEV  111 (140)
T ss_dssp             ECCSCHHHHHHHHHHHHHHCSSSEEEEEESSHHHH
T ss_pred             EECCChHHHHHHHHHHHHHCCCCeEEEEECCHHHH
Confidence            887766432  334456677888888766655443

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=96.85  E-value=0.00077  Score=55.59  Aligned_cols=102  Identities=13%  Similarity=0.136  Sum_probs=65.1

Q ss_pred             CCEEEEEccCccHHHHHHHHH---------------hCCCcEEEEEeCCHHHHHHHHHHHHHcCC--CC-cEEEEEcccc
Q 026506          109 GCLVLESGTGSGSLTTSLARA---------------VAPTGHVYTFDFHEQRAASAREDFERTGV--SS-FVTVGVRDIQ  170 (237)
Q Consensus       109 ~~~vldiG~G~G~~~~~~~~~---------------~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~-~i~~~~~d~~  170 (237)
                      .-+|+|+||++|..+..+...               -.+.-+|+..|+-.+-...+-+.+.....  .. -+.-..+.+-
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy  131 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence            468999999999776543322               12446788999877777766655432110  11 1223345555


Q ss_pred             CCCCCCCCCCCCCEEEEeCCChh--------------------------------------chHHHHHhcccCCCEEEEE
Q 026506          171 GQGFPDEFSGLADSIFLDLPQPW--------------------------------------LAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       171 ~~~~~~~~~~~~D~v~~~~~~~~--------------------------------------~~l~~~~~~L~~gG~l~~~  212 (237)
                      ...+|.   +.+|+|+.+..-+|                                      .+|+.-.+.|+|||++++.
T Consensus       132 ~rlfp~---~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~  208 (359)
T 1m6e_X          132 GRLFPR---NTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT  208 (359)
T ss_dssp             SCCSCT---TCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred             hccCCC---CceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence            566676   88999987543222                                      1166669999999999866


Q ss_pred             e
Q 026506          213 S  213 (237)
Q Consensus       213 ~  213 (237)
                      .
T Consensus       209 ~  209 (359)
T 1m6e_X          209 I  209 (359)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=96.84  E-value=0.0028  Score=49.74  Aligned_cols=105  Identities=14%  Similarity=0.126  Sum_probs=69.3

Q ss_pred             CCCEEEEEccCccHHHHHHHHH---h---CCCcEEEEEeC-----CH----------------------HHHHHH---HH
Q 026506          108 PGCLVLESGTGSGSLTTSLARA---V---APTGHVYTFDF-----HE----------------------QRAASA---RE  151 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~---~---~~~~~v~~vD~-----~~----------------------~~~~~a---~~  151 (237)
                      -...|+|+|+-.|..+..++..   +   +...+++++|.     .+                      +.++..   ++
T Consensus        69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~  148 (257)
T 3tos_A           69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE  148 (257)
T ss_dssp             SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred             CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence            3459999999999988776543   2   34689999992     21                      011111   11


Q ss_pred             HHHHcCC-CCcEEEEEccccCCCCCC----CCCCCCCEEEEeCCChh---chHHHHHhcccCCCEEEEEe
Q 026506          152 DFERTGV-SSFVTVGVRDIQGQGFPD----EFSGLADSIFLDLPQPW---LAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       152 ~~~~~~~-~~~i~~~~~d~~~~~~~~----~~~~~~D~v~~~~~~~~---~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +....+. .++++++.+++.+ .++.    .....+|++++|.....   ..++.+...|+|||++++-.
T Consensus       149 ~~~~~g~~~~~i~li~G~~~d-TL~~~l~~~~~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGvIv~DD  217 (257)
T 3tos_A          149 CSDFFGHVTQRSVLVEGDVRE-TVPRYLAENPQTVIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAFDE  217 (257)
T ss_dssp             TTSTTTTSCCSEEEEESCHHH-HHHHHHHHCTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred             hhhhcCCCCCcEEEEEecHHH-HHHHHHHhCCCCceEEEEEcCcccchHHHHHHHHHHHhCCCcEEEEcC
Confidence            1223454 3669999999875 2221    11146999999987533   46899999999999999654

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=96.79  E-value=0.0034  Score=52.22  Aligned_cols=112  Identities=15%  Similarity=0.040  Sum_probs=72.7

Q ss_pred             CEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC-----CCCCCCE
Q 026506          110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE-----FSGLADS  184 (237)
Q Consensus       110 ~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~-----~~~~~D~  184 (237)
                      .+++|+.||.|+++..+...  +...++++|+++.+.+..+.|+.     + ..+..+|+.+......     ..+.+|+
T Consensus         3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~~-----~-~~~~~~DI~~~~~~~~~~~~~~~~~~D~   74 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINFP-----R-SLHVQEDVSLLNAEIIKGFFKNDMPIDG   74 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHCT-----T-SEEECCCGGGCCHHHHHHHHCSCCCCCE
T ss_pred             CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhCC-----C-CceEecChhhcCHHHHHhhcccCCCeeE
Confidence            58999999999999888766  34668899999999998888742     2 4566788765211100     1257999


Q ss_pred             EEEeCCChh--------------ch---HHHHHhcccCCCEEEEEeCCH------HHHHHHHHHHHh-cC
Q 026506          185 IFLDLPQPW--------------LA---IPSAKKMLKQDGILCSFSPCI------EQVQRSCESLRL-NF  230 (237)
Q Consensus       185 v~~~~~~~~--------------~~---l~~~~~~L~~gG~l~~~~~~~------~~~~~~~~~l~~-~f  230 (237)
                      |+.++|+..              .+   +-++.+.++|.-.++=.++..      ...+.++ .+.+ |+
T Consensus        75 i~ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~~~v~ENV~gl~s~~~~~~~~~i~-~l~~~GY  143 (376)
T 3g7u_A           75 IIGGPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQPLFFLAENVPGIMQEKYSGIRNKAF-NLVSGDY  143 (376)
T ss_dssp             EEECCCCCTTC-------CHHHHHHHHHHHHHHHHHCCSEEEEEECTTTTCGGGHHHHHHHH-HHHHTTE
T ss_pred             EEecCCCCCcccccCCCCCCchHHHHHHHHHHHHHhCCCEEEEecchHhhccCcHHHHHHHH-HHHcCCC
Confidence            999888531              12   334556667876555333322      2345555 6666 54

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=96.75  E-value=0.00067  Score=68.98  Aligned_cols=107  Identities=16%  Similarity=0.160  Sum_probs=71.6

Q ss_pred             hcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506          103 YLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG  180 (237)
Q Consensus       103 ~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  180 (237)
                      ..++++|++||..|+ |. |..++++++..+  .+|++++.+++..+.+++.+...+....++....++.+.......+.
T Consensus      1662 ~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~G--a~Viat~~s~~k~~~l~~~~~~lga~~v~~~~~~~~~~~i~~~t~g~ 1739 (2512)
T 2vz8_A         1662 RGRMQPGESVLIHSGSGGVGQAAIAIALSRG--CRVFTTVGSAEKRAYLQARFPQLDETCFANSRDTSFEQHVLRHTAGK 1739 (2512)
T ss_dssp             TTCCCTTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHCTTCCSTTEEESSSSHHHHHHHHTTTSC
T ss_pred             HhcCCCCCEEEEEeCChHHHHHHHHHHHHcC--CEEEEEeCChhhhHHHHhhcCCCCceEEecCCCHHHHHHHHHhcCCC
Confidence            346889999999975 66 888888888863  58999999999888887753223444322222222221101111124


Q ss_pred             CCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       181 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ++|+|+... . .+.++...+.|+++|+++.++
T Consensus      1740 GvDvVld~~-g-~~~l~~~l~~L~~~Gr~V~iG 1770 (2512)
T 2vz8_A         1740 GVDLVLNSL-A-EEKLQASVRCLAQHGRFLEIG 1770 (2512)
T ss_dssp             CEEEEEECC-C-HHHHHHHHTTEEEEEEEEECC
T ss_pred             CceEEEECC-C-chHHHHHHHhcCCCcEEEEee
Confidence            699977544 3 457999999999999998765

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=96.60  E-value=0.0054  Score=52.74  Aligned_cols=91  Identities=22%  Similarity=0.218  Sum_probs=65.2

Q ss_pred             CCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          106 LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       106 ~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      ..+|++|+.+|+|. |......++.++  .+|+++|.++...+.+++    .|.    ++  .+..+ .+     ..+|+
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~G--a~Viv~d~~~~~~~~A~~----~Ga----~~--~~l~e-~l-----~~aDv  332 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQG--ARVSVTEIDPINALQAMM----EGF----DV--VTVEE-AI-----GDADI  332 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHH----TTC----EE--CCHHH-HG-----GGCSE
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCC----EE--ecHHH-HH-----hCCCE
Confidence            56899999999998 777777777763  589999999988777654    353    21  12221 11     35899


Q ss_pred             EEEeCCChhchHH-HHHhcccCCCEEEEEeCC
Q 026506          185 IFLDLPQPWLAIP-SAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       185 v~~~~~~~~~~l~-~~~~~L~~gG~l~~~~~~  215 (237)
                      |+...+... .+. ...+.||+||+++.++..
T Consensus       333 Vi~atgt~~-~i~~~~l~~mk~ggilvnvG~~  363 (494)
T 3ce6_A          333 VVTATGNKD-IIMLEHIKAMKDHAILGNIGHF  363 (494)
T ss_dssp             EEECSSSSC-SBCHHHHHHSCTTCEEEECSSS
T ss_pred             EEECCCCHH-HHHHHHHHhcCCCcEEEEeCCC
Confidence            988776544 444 788899999999877653

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=96.57  E-value=0.00086  Score=68.22  Aligned_cols=101  Identities=23%  Similarity=0.220  Sum_probs=55.8

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCC----CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC-CCCCCCCCCC
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAP----TGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGFPDEFSGL  181 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~~~  181 (237)
                      .+..+|||+|.|+|..+..+...+..    ..+++..|+++.+.+.++++++...    ++....|..+ ..+..   ..
T Consensus      1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d----i~~~~~d~~~~~~~~~---~~ 1311 (2512)
T 2vz8_A         1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH----VTQGQWDPANPAPGSL---GK 1311 (2512)
T ss_dssp             SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT----EEEECCCSSCCCC--------
T ss_pred             CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc----cccccccccccccCCC---Cc
Confidence            56789999999999887777766642    2468888999988888888776532    3332223322 11222   57


Q ss_pred             CCEEEEeC-----CChhchHHHHHhcccCCCEEEEEeC
Q 026506          182 ADSIFLDL-----PQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       182 ~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ||+|+...     ++...++.++.++|||||++++...
T Consensus      1312 ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A         1312 ADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp             CCEEEEECC--------------------CCEEEEEEC
T ss_pred             eeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEec
Confidence            99998642     2345689999999999999987654

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=96.55  E-value=0.019  Score=46.64  Aligned_cols=110  Identities=13%  Similarity=0.051  Sum_probs=72.0

Q ss_pred             CEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeC
Q 026506          110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDL  189 (237)
Q Consensus       110 ~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~  189 (237)
                      .+|+|+.||.|++...+-..  +-..++++|+++.+.+.-+.|.   +    -.+..+|+.+.....  -..+|+++..+
T Consensus         1 mkvidLFsG~GG~~~G~~~a--G~~~v~a~e~d~~a~~ty~~N~---~----~~~~~~DI~~i~~~~--~~~~D~l~ggp   69 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNH---S----AKLIKGDISKISSDE--FPKCDGIIGGP   69 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHT--TCEEEEEEECCTTTHHHHHHHC---C----SEEEESCGGGCCGGG--SCCCSEEECCC
T ss_pred             CeEEEeCcCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHC---C----CCcccCChhhCCHhh--CCcccEEEecC
Confidence            47999999999998776554  3467889999999998888763   2    245678887632222  25689988766


Q ss_pred             CChh---------------ch---HHHHHhcccCCCEEEEEeCCH------HHHHHHHHHHHh-cC
Q 026506          190 PQPW---------------LA---IPSAKKMLKQDGILCSFSPCI------EQVQRSCESLRL-NF  230 (237)
Q Consensus       190 ~~~~---------------~~---l~~~~~~L~~gG~l~~~~~~~------~~~~~~~~~l~~-~f  230 (237)
                      |+..               .+   +-++.+.++|.-.++=.++..      .....+++.|.+ |+
T Consensus        70 PCQ~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY  135 (331)
T 3ubt_Y           70 PSQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGY  135 (331)
T ss_dssp             CGGGTEETTEECCTTCGGGHHHHHHHHHHHHHCCSEEEEEECCGGGGCTTSHHHHHHHHHHHHHTE
T ss_pred             CCCCcCCCCCccCCCCchhHHHHHHHHHHhccCCeEEEeeeecccccccccchhhhhhhhhccCCc
Confidence            6331               12   334556678875555333322      456777777776 54

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.52  E-value=0.018  Score=42.40  Aligned_cols=101  Identities=18%  Similarity=0.161  Sum_probs=59.7

Q ss_pred             CCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCCC-CCCCCCEE
Q 026506          109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE-FSGLADSI  185 (237)
Q Consensus       109 ~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~-~~~~~D~v  185 (237)
                      +++|+.+|+|. |......+...+ ..+|+++|.+++.++.+++    .+    +.+..+|..+.. +... ....+|+|
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~-g~~V~vid~~~~~~~~~~~----~g----~~~~~gd~~~~~~l~~~~~~~~ad~v  109 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARY-GKISLGIEIREEAAQQHRS----EG----RNVISGDATDPDFWERILDTGHVKLV  109 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHH-CSCEEEEESCHHHHHHHHH----TT----CCEEECCTTCHHHHHTBCSCCCCCEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcc-CCeEEEEECCHHHHHHHHH----CC----CCEEEcCCCCHHHHHhccCCCCCCEE
Confidence            56899999877 555444444320 2579999999988877654    34    334556654311 1110 11569999


Q ss_pred             EEeCCChhc--hHHHHHhcccCCCEEEEEeCCHHH
Q 026506          186 FLDLPQPWL--AIPSAKKMLKQDGILCSFSPCIEQ  218 (237)
Q Consensus       186 ~~~~~~~~~--~l~~~~~~L~~gG~l~~~~~~~~~  218 (237)
                      +...++...  .+-...+.+.|...++........
T Consensus       110 i~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~  144 (183)
T 3c85_A          110 LLAMPHHQGNQTALEQLQRRNYKGQIAAIAEYPDQ  144 (183)
T ss_dssp             EECCSSHHHHHHHHHHHHHTTCCSEEEEEESSHHH
T ss_pred             EEeCCChHHHHHHHHHHHHHCCCCEEEEEECCHHH
Confidence            987776542  222344555667777766554433

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=96.47  E-value=0.0022  Score=57.61  Aligned_cols=120  Identities=22%  Similarity=0.296  Sum_probs=73.6

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHh------CC-----CcEEEEEeCCH---HHHHHHH-----------HHHHHc-----
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAV------AP-----TGHVYTFDFHE---QRAASAR-----------EDFERT-----  156 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~------~~-----~~~v~~vD~~~---~~~~~a~-----------~~~~~~-----  156 (237)
                      ++.-+|+|+|.|+|...+.+.+.+      .+     ..+++++|..|   +-+..+.           +.....     
T Consensus        57 ~~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~  136 (689)
T 3pvc_A           57 QQSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLA  136 (689)
T ss_dssp             SSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCS
T ss_pred             CCceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCC
Confidence            345699999999999877765543      11     14689999844   3333322           112111     


Q ss_pred             C-----CC---CcEEEEEccccCCCCCCC---CCCCCCEEEEeCCCh--------hchHHHHHhcccCCCEEEEEeCCHH
Q 026506          157 G-----VS---SFVTVGVRDIQGQGFPDE---FSGLADSIFLDLPQP--------WLAIPSAKKMLKQDGILCSFSPCIE  217 (237)
Q Consensus       157 ~-----~~---~~i~~~~~d~~~~~~~~~---~~~~~D~v~~~~~~~--------~~~l~~~~~~L~~gG~l~~~~~~~~  217 (237)
                      |     .+   -.+++..+|+.+ .++..   ....+|.+|+|...+        .+++..+.+.++|||++..++.. .
T Consensus       137 ~~~r~~~~~~~~~l~l~~gd~~~-~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~~-~  214 (689)
T 3pvc_A          137 GCHRILLADGAITLDLWFGDVNT-LLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFTAA-G  214 (689)
T ss_dssp             EEEEEEETTTTEEEEEEESCHHH-HGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESCCC-H
T ss_pred             CceEEEecCCcEEEEEEccCHHH-HHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEeccCc-H
Confidence            1     01   136677788864 22211   126799999986432        25789999999999999876653 2


Q ss_pred             HHHHHHHHHHh-cCc
Q 026506          218 QVQRSCESLRL-NFT  231 (237)
Q Consensus       218 ~~~~~~~~l~~-~f~  231 (237)
                         .+.+.+.+ ||.
T Consensus       215 ---~vr~~l~~aGf~  226 (689)
T 3pvc_A          215 ---FVRRGLQQAGFN  226 (689)
T ss_dssp             ---HHHHHHHHTTCE
T ss_pred             ---HHHHHHHhCCeE
Confidence               23344455 664

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=96.42  E-value=0.013  Score=52.58  Aligned_cols=119  Identities=24%  Similarity=0.264  Sum_probs=72.5

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh------CC-----CcEEEEEeC---CHHHHHHHHH-----------HHHHcCC----
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV------AP-----TGHVYTFDF---HEQRAASARE-----------DFERTGV----  158 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~------~~-----~~~v~~vD~---~~~~~~~a~~-----------~~~~~~~----  158 (237)
                      +.-+|+|+|-|+|...+.....+      .|     .-+++++|.   +++-+..+.+           .......    
T Consensus        66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (676)
T 3ps9_A           66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  145 (676)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred             CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence            44599999999999776665543      11     135889998   6655553322           1211111    


Q ss_pred             ---------CCcEEEEEccccCCCCCCC---CCCCCCEEEEeCCCh------h--chHHHHHhcccCCCEEEEEeCCHHH
Q 026506          159 ---------SSFVTVGVRDIQGQGFPDE---FSGLADSIFLDLPQP------W--LAIPSAKKMLKQDGILCSFSPCIEQ  218 (237)
Q Consensus       159 ---------~~~i~~~~~d~~~~~~~~~---~~~~~D~v~~~~~~~------~--~~l~~~~~~L~~gG~l~~~~~~~~~  218 (237)
                               .-.+++..+|+.+ .++..   ....+|++|+|.-.+      |  +++..+.+.++|||++..++... .
T Consensus       146 ~~~~~~~~~~~~l~l~~gd~~~-~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~~~-~  223 (676)
T 3ps9_A          146 CHRLLLDAGRVTLDLWFGDINE-LTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTSAG-F  223 (676)
T ss_dssp             EEEEEEGGGTEEEEEEESCHHH-HGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESCCCH-H
T ss_pred             ceEEEecCCcEEEEEecCCHHH-HHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEeccCcH-H
Confidence                     0124556677764 12211   125799999987433      2  57899999999999999776542 2


Q ss_pred             HHHHHHHHHh-cCc
Q 026506          219 VQRSCESLRL-NFT  231 (237)
Q Consensus       219 ~~~~~~~l~~-~f~  231 (237)
                         +.+.|.+ +|.
T Consensus       224 ---vr~~L~~aGf~  234 (676)
T 3ps9_A          224 ---VRRGLQDAGFT  234 (676)
T ss_dssp             ---HHHHHHHHTCE
T ss_pred             ---HHHHHHhCCeE
Confidence               3344445 663

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.17  E-value=0.035  Score=37.24  Aligned_cols=105  Identities=15%  Similarity=0.122  Sum_probs=58.2

Q ss_pred             CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC-CCCCCCCCCCCEE
Q 026506          108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GFPDEFSGLADSI  185 (237)
Q Consensus       108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~~~D~v  185 (237)
                      .+.+|+.+|+|. |......+... +..+++++|.+++..+.+..    .+    +.+...|..+. .+... -..+|+|
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~-g~~~v~~~~r~~~~~~~~~~----~~----~~~~~~d~~~~~~~~~~-~~~~d~v   73 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTS-SNYSVTVADHDLAALAVLNR----MG----VATKQVDAKDEAGLAKA-LGGFDAV   73 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHC-SSEEEEEEESCHHHHHHHHT----TT----CEEEECCTTCHHHHHHH-TTTCSEE
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHh----CC----CcEEEecCCCHHHHHHH-HcCCCEE
Confidence            356899999854 33333333332 22689999999987776541    22    55566676541 11111 1468998


Q ss_pred             EEeCCChhchHHHHHhcccCCCEEEEEeCCHHHHHHHH
Q 026506          186 FLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSC  223 (237)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~  223 (237)
                      +...+... ...-+...++.|...+.++......+.+.
T Consensus        74 i~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  110 (118)
T 3ic5_A           74 ISAAPFFL-TPIIAKAAKAAGAHYFDLTEDVAATNAVR  110 (118)
T ss_dssp             EECSCGGG-HHHHHHHHHHTTCEEECCCSCHHHHHHHH
T ss_pred             EECCCchh-hHHHHHHHHHhCCCEEEecCcHHHHHHHH
Confidence            88775332 23333334455555665666555444443

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.14  E-value=0.0064  Score=49.44  Aligned_cols=49  Identities=18%  Similarity=0.205  Sum_probs=41.2

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG  157 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~  157 (237)
                      ..+|+.|||..||+|..+.+....   ..+.+++|+++...+.+++++...+
T Consensus       250 ~~~~~~VlDpF~GsGtt~~aa~~~---gr~~ig~e~~~~~~~~~~~r~~~~~  298 (323)
T 1boo_A          250 TEPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFLDNN  298 (323)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHhcc
Confidence            478999999999999988665544   4799999999999999999876544

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=96.13  E-value=0.0087  Score=49.76  Aligned_cols=96  Identities=15%  Similarity=0.150  Sum_probs=60.9

Q ss_pred             CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      ++.+|+.+|+|. |..+...+..++  .+|+++|.+++.++.+++.   .+..  +.....+..  .+.+.. ..+|+|+
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~G--a~V~~~d~~~~~l~~~~~~---~g~~--~~~~~~~~~--~l~~~l-~~aDvVi  236 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMG--ATVTVLDINIDKLRQLDAE---FCGR--IHTRYSSAY--ELEGAV-KRADLVI  236 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH---TTTS--SEEEECCHH--HHHHHH-HHCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHh---cCCe--eEeccCCHH--HHHHHH-cCCCEEE
Confidence            578999999988 666777777653  4899999999988777653   2322  111111110  011100 3589988


Q ss_pred             EeCCChh-----chHHHHHhcccCCCEEEEEe
Q 026506          187 LDLPQPW-----LAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       187 ~~~~~~~-----~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ...+.+.     -+.+...+.|+|||+++.++
T Consensus       237 ~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          237 GAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             ECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred             ECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence            7553322     13677888999999988654

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=96.09  E-value=0.013  Score=48.39  Aligned_cols=95  Identities=17%  Similarity=0.199  Sum_probs=60.2

Q ss_pred             CCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506          109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL  187 (237)
Q Consensus       109 ~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~  187 (237)
                      +.+|+.+|+|. |..+...+..++  .+|+++|.+++.++.+++....    . +.....+..  .+.+.. ..+|+|+.
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~G--a~V~v~dr~~~r~~~~~~~~~~----~-~~~~~~~~~--~~~~~~-~~~DvVI~  236 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDINVERLSYLETLFGS----R-VELLYSNSA--EIETAV-AEADLLIG  236 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHGG----G-SEEEECCHH--HHHHHH-HTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHhhCc----e-eEeeeCCHH--HHHHHH-cCCCEEEE
Confidence            48999999988 666777777763  3899999999998888765422    1 211111110  011100 35899886


Q ss_pred             eCCChh-----chHHHHHhcccCCCEEEEEe
Q 026506          188 DLPQPW-----LAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       188 ~~~~~~-----~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ..+.+.     ...+...+.|++||+++.++
T Consensus       237 ~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~  267 (361)
T 1pjc_A          237 AVLVPGRRAPILVPASLVEQMRTGSVIVDVA  267 (361)
T ss_dssp             CCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             CCCcCCCCCCeecCHHHHhhCCCCCEEEEEe
Confidence            554322     13567788899999887553

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.99  E-value=0.01  Score=48.16  Aligned_cols=54  Identities=19%  Similarity=0.156  Sum_probs=41.6

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCH---HHHHHHHHHHHHcC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHE---QRAASAREDFERTG  157 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~---~~~~~a~~~~~~~~  157 (237)
                      ++... ..+|+.|||..||+|..+.+....   ..+.+++|+++   ..++.+++++...+
T Consensus       235 ~i~~~-~~~~~~vlDpF~GsGtt~~aa~~~---~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          235 LVRAL-SHPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             HHHHH-SCTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             HHHHh-CCCCCEEEecCCCCCHHHHHHHHc---CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            44333 478999999999999998777665   37899999999   99999999875443

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=95.93  E-value=0.062  Score=43.38  Aligned_cols=95  Identities=19%  Similarity=0.202  Sum_probs=59.1

Q ss_pred             CCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506          109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL  187 (237)
Q Consensus       109 ~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~  187 (237)
                      ..+|..||+|. |......+...+...+|+++|.+++.++.+++    .|...   ....|..+...     ...|+|++
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~----~G~~~---~~~~~~~~~~~-----~~aDvVil  100 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGIID---EGTTSIAKVED-----FSPDFVML  100 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSCS---EEESCTTGGGG-----GCCSEEEE
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH----CCCcc---hhcCCHHHHhh-----ccCCEEEE
Confidence            36899999987 54433333333322389999999988877664    35322   11222210011     45899999


Q ss_pred             eCCCh--hchHHHHHhcccCCCEEEEEeCC
Q 026506          188 DLPQP--WLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       188 ~~~~~--~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      ..|..  .++++++...++++..++-.+..
T Consensus       101 avp~~~~~~vl~~l~~~l~~~~iv~d~~Sv  130 (314)
T 3ggo_A          101 SSPVRTFREIAKKLSYILSEDATVTDQGSV  130 (314)
T ss_dssp             CSCGGGHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred             eCCHHHHHHHHHHHhhccCCCcEEEECCCC
Confidence            88754  24677788888998877655544

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=95.92  E-value=0.04  Score=45.70  Aligned_cols=118  Identities=14%  Similarity=0.205  Sum_probs=76.3

Q ss_pred             HHHHhcC-CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEEccccCCCCCC
Q 026506           99 FVIMYLE-LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSF-VTVGVRDIQGQGFPD  176 (237)
Q Consensus        99 ~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-i~~~~~d~~~~~~~~  176 (237)
                      .+++.+. ...+.+||+++.+.|.++..++..     .++.+.-|--....++.|+..+++... +++..  .. ...+ 
T Consensus        28 ~ll~~~~~~~~~~~~~~~~d~~gal~~~~~~~-----~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~--~~-~~~~-   98 (375)
T 4dcm_A           28 YLLQQLDDTEIRGPVLILNDAFGALSCALAEH-----KPYSIGDSYISELATRENLRLNGIDESSVKFLD--ST-ADYP-   98 (375)
T ss_dssp             HHHHTTTTCCCCSCEEEECCSSSHHHHHTGGG-----CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEE--TT-SCCC-
T ss_pred             HHHHhhhhccCCCCEEEECCCCCHHHHhhccC-----CceEEEhHHHHHHHHHHHHHHcCCCccceEecc--cc-cccc-
Confidence            4555543 235568999999999998777643     233333244555677888888887642 44332  22 1122 


Q ss_pred             CCCCCCCEEEEeCCChh----chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh
Q 026506          177 EFSGLADSIFLDLPQPW----LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL  228 (237)
Q Consensus       177 ~~~~~~D~v~~~~~~~~----~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~  228 (237)
                         ..+|+|+.-.|...    ..|..+...|++|+.+++.+....-..+..+.+.+
T Consensus        99 ---~~~~~v~~~lpk~~~~l~~~L~~l~~~l~~~~~i~~~g~~~~~~~~~~~~l~~  151 (375)
T 4dcm_A           99 ---QQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEK  151 (375)
T ss_dssp             ---SSCSEEEEECCSCHHHHHHHHHHHHTTCCTTSEEEEEEEGGGCCHHHHHHHHH
T ss_pred             ---cCCCEEEEEcCCCHHHHHHHHHHHHhhCCCCCEEEEEecccchHHHHHHHHHh
Confidence               57999999888664    35778888899999998887654444455555544

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=95.92  E-value=0.011  Score=48.87  Aligned_cols=97  Identities=15%  Similarity=0.183  Sum_probs=60.2

Q ss_pred             CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      ++.+|+.+|+|. |..+...+...+  .+|+++|.+++.++.+++.   .+..  +.....+..+  +.+.. ..+|+|+
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~G--a~V~~~d~~~~~~~~~~~~---~g~~--~~~~~~~~~~--l~~~~-~~~DvVi  234 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMG--AQVTILDVNHKRLQYLDDV---FGGR--VITLTATEAN--IKKSV-QHADLLI  234 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH---TTTS--EEEEECCHHH--HHHHH-HHCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHh---cCce--EEEecCCHHH--HHHHH-hCCCEEE
Confidence            468999999987 666666666653  5899999999888776543   2322  2222111110  11100 3589998


Q ss_pred             EeCCChh-----chHHHHHhcccCCCEEEEEeC
Q 026506          187 LDLPQPW-----LAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       187 ~~~~~~~-----~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .+.+.+.     ...+...+.|++||+++.++.
T Consensus       235 ~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~  267 (369)
T 2eez_A          235 GAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAV  267 (369)
T ss_dssp             ECCC-------CCSCHHHHTTSCTTCEEEECC-
T ss_pred             ECCCCCccccchhHHHHHHHhhcCCCEEEEEec
Confidence            7765432     236788899999999886653

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=95.81  E-value=0.058  Score=44.00  Aligned_cols=114  Identities=18%  Similarity=0.105  Sum_probs=70.0

Q ss_pred             CEEEEEccCccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506          110 CLVLESGTGSGSLTTSLARAVAP-TGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD  188 (237)
Q Consensus       110 ~~vldiG~G~G~~~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~  188 (237)
                      .+++|+.||.|++...+... +- ...++++|+++.+.+..+.|+.     . ..+...|+.+..........+|+++..
T Consensus         4 ~~~idLFaG~GG~~~G~~~a-G~~~~~v~a~e~d~~a~~ty~~N~~-----~-~~~~~~DI~~~~~~~~~~~~~D~l~gg   76 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKES-GLDGEIVAAVDINTVANSVYKHNFP-----E-TNLLNRNIQQLTPQVIKKWNVDTILMS   76 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCT-----T-SCEECCCGGGCCHHHHHHTTCCEEEEC
T ss_pred             CEEEEECcCccHHHHHHHHc-CCCceEEEEEeCCHHHHHHHHHhCC-----C-CceeccccccCCHHHhccCCCCEEEec
Confidence            47999999999999877665 22 2468899999999998888742     1 234567776522111101368999877


Q ss_pred             CCChh---------------chHH---HHHhccc-CCCEEEEEeCCH---HHHHHHHHHHHh-cC
Q 026506          189 LPQPW---------------LAIP---SAKKMLK-QDGILCSFSPCI---EQVQRSCESLRL-NF  230 (237)
Q Consensus       189 ~~~~~---------------~~l~---~~~~~L~-~gG~l~~~~~~~---~~~~~~~~~l~~-~f  230 (237)
                      +|+..               .++.   ++.+.++ |.-.++=.++..   ...+.+++.|++ |+
T Consensus        77 pPCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~P~~~vlENV~gl~~~~~~~~i~~~l~~~GY  141 (333)
T 4h0n_A           77 PPCQPFTRNGKYLDDNDPRTNSFLYLIGILDQLDNVDYILMENVKGFENSTVRNLFIDKLKECNF  141 (333)
T ss_dssp             CCCCCSEETTEECCTTCTTSCCHHHHHHHGGGCTTCCEEEEEECTTGGGSHHHHHHHHHHHHTTE
T ss_pred             CCCcchhhhhhccCCcCcccccHHHHHHHHHHhcCCCEEEEecchhhhhhhHHHHHHHHHHhCCC
Confidence            66331               2333   3444555 765554334433   235667777776 54

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.76  E-value=0.07  Score=37.28  Aligned_cols=97  Identities=10%  Similarity=0.031  Sum_probs=56.5

Q ss_pred             CCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCCCCCCCCCEEE
Q 026506          109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLADSIF  186 (237)
Q Consensus       109 ~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~~D~v~  186 (237)
                      ..+|+.+|+|. |......+...  ..+|+++|.+++.++.+++    .+    ..+..+|..+.. +.......+|.|+
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~--g~~V~~id~~~~~~~~~~~----~~----~~~~~gd~~~~~~l~~~~~~~~d~vi   75 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAA--GKKVLAVDKSKEKIELLED----EG----FDAVIADPTDESFYRSLDLEGVSAVL   75 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHH----TT----CEEEECCTTCHHHHHHSCCTTCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHH----CC----CcEEECCCCCHHHHHhCCcccCCEEE
Confidence            45799999976 44333333332  3689999999998877765    23    556778876521 1111114689999


Q ss_pred             EeCCChhc--hHHHHHhcccCCCEEEEEeCCH
Q 026506          187 LDLPQPWL--AIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       187 ~~~~~~~~--~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                      ...++...  .+....+.+. ...++......
T Consensus        76 ~~~~~~~~n~~~~~~a~~~~-~~~iia~~~~~  106 (141)
T 3llv_A           76 ITGSDDEFNLKILKALRSVS-DVYAIVRVSSP  106 (141)
T ss_dssp             ECCSCHHHHHHHHHHHHHHC-CCCEEEEESCG
T ss_pred             EecCCHHHHHHHHHHHHHhC-CceEEEEEcCh
Confidence            87775432  2233334444 55555454433

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=95.60  E-value=0.054  Score=45.52  Aligned_cols=100  Identities=15%  Similarity=0.156  Sum_probs=66.3

Q ss_pred             CCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCC-CCCCCCCCCEEE
Q 026506          109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF-PDEFSGLADSIF  186 (237)
Q Consensus       109 ~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~~D~v~  186 (237)
                      ..+|+.+|+|. |......+...  ...|+++|.+++.++.+++    .+    +.++.+|..+... .......+|+|+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~--g~~vvvId~d~~~v~~~~~----~g----~~vi~GDat~~~~L~~agi~~A~~vi   73 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSS--GVKMVVLDHDPDHIETLRK----FG----MKVFYGDATRMDLLESAGAAKAEVLI   73 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT--TCCEEEEECCHHHHHHHHH----TT----CCCEESCTTCHHHHHHTTTTTCSEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHh----CC----CeEEEcCCCCHHHHHhcCCCccCEEE
Confidence            46789999887 55554444443  3679999999999988875    34    4457788876221 111125699999


Q ss_pred             EeCCChhc--hHHHHHhcccCCCEEEEEeCCHHH
Q 026506          187 LDLPQPWL--AIPSAKKMLKQDGILCSFSPCIEQ  218 (237)
Q Consensus       187 ~~~~~~~~--~l~~~~~~L~~gG~l~~~~~~~~~  218 (237)
                      +..++...  .+....+.+.|...+++-......
T Consensus        74 v~~~~~~~n~~i~~~ar~~~p~~~Iiara~~~~~  107 (413)
T 3l9w_A           74 NAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDH  107 (413)
T ss_dssp             ECCSSHHHHHHHHHHHHHHCTTCEEEEEESSHHH
T ss_pred             ECCCChHHHHHHHHHHHHhCCCCeEEEEECCHHH
Confidence            88776543  344556677788888866655444

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=95.50  E-value=0.029  Score=46.69  Aligned_cols=99  Identities=16%  Similarity=0.184  Sum_probs=59.8

Q ss_pred             CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEE---------------cccc
Q 026506          108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSF-VTVGV---------------RDIQ  170 (237)
Q Consensus       108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-i~~~~---------------~d~~  170 (237)
                      ++.+|+.+|+|. |..+..++..++  .+|+++|.++...+.+++    .|.... ++...               .+..
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~~~d~~~~~~~~~~~----~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~  244 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAATKEQVES----LGGKFITVDDEAMKTAETAGGYAKEMGEEFR  244 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTTHHHHHH----TTCEECCC-----------------------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCeEEeecccccccccccccchhhcCHHHH
Confidence            688999999999 777777887764  479999999887777654    342110 00100               0000


Q ss_pred             C---CCCCCCCCCCCCEEEEeC--CC---hhchHHHHHhcccCCCEEEEEe
Q 026506          171 G---QGFPDEFSGLADSIFLDL--PQ---PWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       171 ~---~~~~~~~~~~~D~v~~~~--~~---~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .   ..+.+ .-..+|+|+...  |.   +..+.+...+.|+||++++-++
T Consensus       245 ~~~~~~l~~-~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva  294 (384)
T 1l7d_A          245 KKQAEAVLK-ELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA  294 (384)
T ss_dssp             CCHHHHHHH-HHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred             hhhHHHHHH-HhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEe
Confidence            0   00111 013589998665  22   1112477889999999988554

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.50  E-value=0.021  Score=40.95  Aligned_cols=101  Identities=16%  Similarity=-0.002  Sum_probs=56.6

Q ss_pred             CCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCCCCCCCCCE
Q 026506          107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLADS  184 (237)
Q Consensus       107 ~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~~D~  184 (237)
                      .++.+|+.+|+|. |......+...  ..+|+++|.+++.++.+++   ..+    ..+..+|..+.. +.......+|+
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~--g~~V~vid~~~~~~~~~~~---~~g----~~~~~~d~~~~~~l~~~~~~~ad~   87 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSS--GHSVVVVDKNEYAFHRLNS---EFS----GFTVVGDAAEFETLKECGMEKADM   87 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCGGGGGGSCT---TCC----SEEEESCTTSHHHHHTTTGGGCSE
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHh---cCC----CcEEEecCCCHHHHHHcCcccCCE
Confidence            4678999999987 65555555443  3589999999877654431   122    334555643210 11100146899


Q ss_pred             EEEeCCChhc--hHHHHHhcccCCCEEEEEeCCH
Q 026506          185 IFLDLPQPWL--AIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       185 v~~~~~~~~~--~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                      |+...+.+..  .+..+.+.+.+...++......
T Consensus        88 Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~  121 (155)
T 2g1u_A           88 VFAFTNDDSTNFFISMNARYMFNVENVIARVYDP  121 (155)
T ss_dssp             EEECSSCHHHHHHHHHHHHHTSCCSEEEEECSSG
T ss_pred             EEEEeCCcHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence            9988776542  2223334444555666554433

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=95.44  E-value=0.075  Score=44.03  Aligned_cols=93  Identities=18%  Similarity=0.233  Sum_probs=60.0

Q ss_pred             CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc--ccC-------------
Q 026506          108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD--IQG-------------  171 (237)
Q Consensus       108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d--~~~-------------  171 (237)
                      ++.+|+.+|+|. |..+..++..++  .+|+++|.++..++.+++    .|..    +...+  ...             
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lG--a~V~v~D~~~~~l~~~~~----lGa~----~~~l~~~~~~~~gya~~~~~~~~  252 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLG--AKTTGYDVRPEVAEQVRS----VGAQ----WLDLGIDAAGEGGYARELSEAER  252 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHT--CEEEEECSSGGGHHHHHH----TTCE----ECCCC-------------CHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCe----EEeccccccccccchhhhhHHHH
Confidence            678999999999 777888888874  589999999998887766    2321    11100  000             


Q ss_pred             ----CCCCCCCCCCCCEEEEeC--C---ChhchHHHHHhcccCCCEEEE
Q 026506          172 ----QGFPDEFSGLADSIFLDL--P---QPWLAIPSAKKMLKQDGILCS  211 (237)
Q Consensus       172 ----~~~~~~~~~~~D~v~~~~--~---~~~~~l~~~~~~L~~gG~l~~  211 (237)
                          ..+.+ .-..+|+|+...  |   .+.-+-+...+.||||++++-
T Consensus       253 ~~~~~~l~e-~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVD  300 (381)
T 3p2y_A          253 AQQQQALED-AITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVD  300 (381)
T ss_dssp             HHHHHHHHH-HHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEE
T ss_pred             hhhHHHHHH-HHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEE
Confidence                00000 114689988643  2   222245888999999988873

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=95.43  E-value=0.018  Score=48.32  Aligned_cols=95  Identities=19%  Similarity=0.264  Sum_probs=59.7

Q ss_pred             CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc-------------CC-
Q 026506          108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ-------------GQ-  172 (237)
Q Consensus       108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~-------------~~-  172 (237)
                      ++.+|+.+|+|. |..+..++..++  .+|+++|.++..++.+++    .|..    +...|..             .. 
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~v~D~~~~~~~~~~~----lGa~----~~~~~~~~~~~~~~g~~~~~~~~  240 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQS----MGAE----FLELDFKEEAGSGDGYAKVMSDA  240 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCGGGHHHHHH----TTCE----ECCC--------CCHHHHHHSHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHH----cCCE----EEEecccccccccccchhhccHH
Confidence            578999999999 777777887764  489999999988877644    3421    1111100             00 


Q ss_pred             -------CCCCCCCCCCCEEEEeC--C---ChhchHHHHHhcccCCCEEEEEe
Q 026506          173 -------GFPDEFSGLADSIFLDL--P---QPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       173 -------~~~~~~~~~~D~v~~~~--~---~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                             .+.+.. ..+|+|+...  |   .+..+-+...+.|+|||+++.++
T Consensus       241 ~~~~~~~~l~e~~-~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva  292 (401)
T 1x13_A          241 FIKAEMELFAAQA-KEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLA  292 (401)
T ss_dssp             HHHHHHHHHHHHH-HHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred             HHHHHHHHHHHHh-CCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEc
Confidence                   011100 2489988763  2   11223367888999999988554

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=95.15  E-value=0.052  Score=43.45  Aligned_cols=79  Identities=13%  Similarity=-0.059  Sum_probs=52.9

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC-CCCCCC
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGH-VYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE-FSGLAD  183 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~~~~D  183 (237)
                      .+...+++|+.||.|++...+... +-... ++++|+++.+.+..+.|..     + ..+..+|+.+...... ..+.+|
T Consensus        13 ~~~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~~-----~-~~~~~~DI~~i~~~~i~~~~~~D   85 (295)
T 2qrv_A           13 KRKPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRHQ-----G-KIMYVGDVRSVTQKHIQEWGPFD   85 (295)
T ss_dssp             CCCCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHTT-----T-CEEEECCGGGCCHHHHHHTCCCS
T ss_pred             cCCCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhCC-----C-CceeCCChHHccHHHhcccCCcC
Confidence            355679999999999999777654 32222 6999999999888777632     2 3466788875211110 013699


Q ss_pred             EEEEeCCC
Q 026506          184 SIFLDLPQ  191 (237)
Q Consensus       184 ~v~~~~~~  191 (237)
                      +++..+|+
T Consensus        86 ll~ggpPC   93 (295)
T 2qrv_A           86 LVIGGSPC   93 (295)
T ss_dssp             EEEECCCC
T ss_pred             EEEecCCC
Confidence            99877653

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=95.14  E-value=0.096  Score=41.76  Aligned_cols=90  Identities=14%  Similarity=0.082  Sum_probs=58.0

Q ss_pred             CCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-ccccCCCCCCCCCCCCCE
Q 026506          107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV-RDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       107 ~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~~~~D~  184 (237)
                      -.+.+|+.+|+|. |......+..++  .+|+++|.+++..+.+++    .+.    .... .+.. ..+     ...|+
T Consensus       153 l~g~~v~IiG~G~iG~~~a~~l~~~G--~~V~~~dr~~~~~~~~~~----~g~----~~~~~~~l~-~~l-----~~aDv  216 (293)
T 3d4o_A          153 IHGANVAVLGLGRVGMSVARKFAALG--AKVKVGARESDLLARIAE----MGM----EPFHISKAA-QEL-----RDVDV  216 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH----TTS----EEEEGGGHH-HHT-----TTCSE
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHH----CCC----eecChhhHH-HHh-----cCCCE
Confidence            4688999999988 666656666553  589999999876554432    342    2221 1221 111     45899


Q ss_pred             EEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          185 IFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       185 v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      |+...|... .-+...+.+++|+.++-.+
T Consensus       217 Vi~~~p~~~-i~~~~l~~mk~~~~lin~a  244 (293)
T 3d4o_A          217 CINTIPALV-VTANVLAEMPSHTFVIDLA  244 (293)
T ss_dssp             EEECCSSCC-BCHHHHHHSCTTCEEEECS
T ss_pred             EEECCChHH-hCHHHHHhcCCCCEEEEec
Confidence            998877532 3345677899999888554

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=95.11  E-value=0.021  Score=46.45  Aligned_cols=75  Identities=21%  Similarity=0.276  Sum_probs=50.8

Q ss_pred             CCEEEEEccCccHHHHHHHHHhCC-CcEE-EEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          109 GCLVLESGTGSGSLTTSLARAVAP-TGHV-YTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       109 ~~~vldiG~G~G~~~~~~~~~~~~-~~~v-~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      ..+++|+.||.|++...+... +- ...+ +++|+++.+.+..+.|....       +..+|+.+..........+|+++
T Consensus        10 ~~~vidLFaG~GG~~~G~~~a-G~~~~~v~~a~e~d~~a~~ty~~N~~~~-------~~~~DI~~~~~~~i~~~~~Dil~   81 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERS-SININATFIPFDINEIANKIYSKNFKEE-------VQVKNLDSISIKQIESLNCNTWF   81 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHS-SCCCCEEEEEECCCHHHHHHHHHHHCCC-------CBCCCTTTCCHHHHHHTCCCEEE
T ss_pred             CCEEEEECCChhHHHHHHHHc-CCCceEEEEEEECCHHHHHHHHHHCCCC-------cccCChhhcCHHHhccCCCCEEE
Confidence            458999999999999777654 31 2457 79999999999998885321       34567764221110012689998


Q ss_pred             EeCCC
Q 026506          187 LDLPQ  191 (237)
Q Consensus       187 ~~~~~  191 (237)
                      ..+|+
T Consensus        82 ggpPC   86 (327)
T 3qv2_A           82 MSPPC   86 (327)
T ss_dssp             ECCCC
T ss_pred             ecCCc
Confidence            77663

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=95.03  E-value=0.17  Score=39.77  Aligned_cols=105  Identities=19%  Similarity=0.197  Sum_probs=60.3

Q ss_pred             CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC-CCCEEEE
Q 026506          110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG-LADSIFL  187 (237)
Q Consensus       110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~-~~D~v~~  187 (237)
                      .+|..||+|. |......+...+...+|+++|.+++.++.+++    .|...  . ...|..+ ..     . ..|+|++
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g~~~--~-~~~~~~~-~~-----~~~aDvVil   68 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGIID--E-GTTSIAK-VE-----DFSPDFVML   68 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSCS--E-EESCGGG-GG-----GTCCSEEEE
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH----CCCcc--c-ccCCHHH-Hh-----cCCCCEEEE
Confidence            3688999887 55444433343222379999999988776654    35321  1 1122211 11     3 5899999


Q ss_pred             eCCChh--chHHHHHhcccCCCEEEEEeCCH-HHHHHHHHHHH
Q 026506          188 DLPQPW--LAIPSAKKMLKQDGILCSFSPCI-EQVQRSCESLR  227 (237)
Q Consensus       188 ~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~-~~~~~~~~~l~  227 (237)
                      ..+...  ++++.+...++++..++..+... ...+.+.+.+.
T Consensus        69 avp~~~~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~  111 (281)
T 2g5c_A           69 SSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILG  111 (281)
T ss_dssp             CSCHHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHG
T ss_pred             cCCHHHHHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhcc
Confidence            887542  45666777788888666443322 22334444443

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=94.99  E-value=0.087  Score=44.31  Aligned_cols=89  Identities=17%  Similarity=0.221  Sum_probs=58.2

Q ss_pred             CCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          106 LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       106 ~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      .-.|.+|+.+|+|. |......++.+  ..+|+++|.++.....+..    .|.    .+  .++. ..+     ...|+
T Consensus       217 ~L~GktV~ViG~G~IGk~vA~~Lra~--Ga~Viv~D~dp~ra~~A~~----~G~----~v--~~Le-eal-----~~ADI  278 (435)
T 3gvp_A          217 MFGGKQVVVCGYGEVGKGCCAALKAM--GSIVYVTEIDPICALQACM----DGF----RL--VKLN-EVI-----RQVDI  278 (435)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTC----EE--CCHH-HHT-----TTCSE
T ss_pred             eecCCEEEEEeeCHHHHHHHHHHHHC--CCEEEEEeCChhhhHHHHH----cCC----Ee--ccHH-HHH-----hcCCE
Confidence            45789999999999 66666667665  3589999999876554432    342    11  2222 112     35799


Q ss_pred             EEEeCCChhchHH-HHHhcccCCCEEEEEe
Q 026506          185 IFLDLPQPWLAIP-SAKKMLKQDGILCSFS  213 (237)
Q Consensus       185 v~~~~~~~~~~l~-~~~~~L~~gG~l~~~~  213 (237)
                      |+....... .+. +..+.||+|++++-.+
T Consensus       279 Vi~atgt~~-lI~~e~l~~MK~gailINvg  307 (435)
T 3gvp_A          279 VITCTGNKN-VVTREHLDRMKNSCIVCNMG  307 (435)
T ss_dssp             EEECSSCSC-SBCHHHHHHSCTTEEEEECS
T ss_pred             EEECCCCcc-cCCHHHHHhcCCCcEEEEec
Confidence            887533333 444 7888999999887554

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=94.99  E-value=0.29  Score=33.63  Aligned_cols=96  Identities=14%  Similarity=0.021  Sum_probs=53.7

Q ss_pred             CCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCCCCCCCCCEEE
Q 026506          109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLADSIF  186 (237)
Q Consensus       109 ~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~~D~v~  186 (237)
                      +.+|+.+|+|. |......+...  ..+|+++|.+++..+.+++.   .+    +.+..+|..+.. +.......+|+|+
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~--g~~v~~~d~~~~~~~~~~~~---~~----~~~~~~d~~~~~~l~~~~~~~~d~vi   74 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEK--GHDIVLIDIDKDICKKASAE---ID----ALVINGDCTKIKTLEDAGIEDADMYI   74 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHH---CS----SEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHh---cC----cEEEEcCCCCHHHHHHcCcccCCEEE
Confidence            46899998876 44333333332  36899999998877655432   23    344556654311 1100014689999


Q ss_pred             EeCCChh--chHHHHHhcccCCCEEEEEeC
Q 026506          187 LDLPQPW--LAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       187 ~~~~~~~--~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +..+...  ..+..+.+.+.++ .+++...
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~-~ii~~~~  103 (140)
T 1lss_A           75 AVTGKEEVNLMSSLLAKSYGIN-KTIARIS  103 (140)
T ss_dssp             ECCSCHHHHHHHHHHHHHTTCC-CEEEECS
T ss_pred             EeeCCchHHHHHHHHHHHcCCC-EEEEEec
Confidence            8877653  2344455556665 5554443

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=94.99  E-value=0.017  Score=45.02  Aligned_cols=82  Identities=17%  Similarity=0.184  Sum_probs=49.1

Q ss_pred             CCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCH-------------------HHHHHHHHHHHHcCCCCcEEEEEcc
Q 026506          109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHE-------------------QRAASAREDFERTGVSSFVTVGVRD  168 (237)
Q Consensus       109 ~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~i~~~~~d  168 (237)
                      +.+|+.+|+|. |......+...+ -++++.+|.+.                   ...+.+.+++...+-.-.+.....+
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~G-v~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~  109 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAG-VGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNAL  109 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcC-CCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEecc
Confidence            57999999987 665555444443 46899999887                   6777777777654322225554444


Q ss_pred             ccCCCCCCCCCCCCCEEEEeCCCh
Q 026506          169 IQGQGFPDEFSGLADSIFLDLPQP  192 (237)
Q Consensus       169 ~~~~~~~~~~~~~~D~v~~~~~~~  192 (237)
                      +........ -..+|+|+...+..
T Consensus       110 ~~~~~~~~~-~~~~DvVi~~~d~~  132 (249)
T 1jw9_B          110 LDDAELAAL-IAEHDLVLDCTDNV  132 (249)
T ss_dssp             CCHHHHHHH-HHTSSEEEECCSSH
T ss_pred             CCHhHHHHH-HhCCCEEEEeCCCH
Confidence            331111110 13699988765443

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=94.94  E-value=0.11  Score=43.30  Aligned_cols=42  Identities=19%  Similarity=0.276  Sum_probs=35.5

Q ss_pred             CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026506          108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASARE  151 (237)
Q Consensus       108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~  151 (237)
                      ++.+|+.+|+|. |..+..++..++  .+|+++|.++..++.+++
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lG--a~V~v~D~~~~~l~~~~~  231 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLG--AVVSATDVRPAAKEQVAS  231 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSTTHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHH
Confidence            578999999999 777778888764  589999999998888766

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=94.92  E-value=0.14  Score=40.95  Aligned_cols=90  Identities=13%  Similarity=0.111  Sum_probs=57.8

Q ss_pred             CCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-ccccCCCCCCCCCCCCCE
Q 026506          107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV-RDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       107 ~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~~~~D~  184 (237)
                      -.+.+|+.+|+|. |......+..++  .+|+++|.+++..+.+.+    .+.    +... .+.. ..+     ...|+
T Consensus       155 l~g~~v~IiG~G~iG~~~a~~l~~~G--~~V~~~d~~~~~~~~~~~----~g~----~~~~~~~l~-~~l-----~~aDv  218 (300)
T 2rir_A          155 IHGSQVAVLGLGRTGMTIARTFAALG--ANVKVGARSSAHLARITE----MGL----VPFHTDELK-EHV-----KDIDI  218 (300)
T ss_dssp             STTSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH----TTC----EEEEGGGHH-HHS-----TTCSE
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH----CCC----eEEchhhHH-HHh-----hCCCE
Confidence            4678999999988 655555555553  589999999876554433    342    2221 2221 111     45899


Q ss_pred             EEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          185 IFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       185 v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      |+...|... .-+...+.++||+.++-.+
T Consensus       219 Vi~~~p~~~-i~~~~~~~mk~g~~lin~a  246 (300)
T 2rir_A          219 CINTIPSMI-LNQTVLSSMTPKTLILDLA  246 (300)
T ss_dssp             EEECCSSCC-BCHHHHTTSCTTCEEEECS
T ss_pred             EEECCChhh-hCHHHHHhCCCCCEEEEEe
Confidence            998877532 3345678899999887554

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=94.63  E-value=0.019  Score=40.57  Aligned_cols=96  Identities=13%  Similarity=0.022  Sum_probs=53.9

Q ss_pred             HHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-ccccCCCCCCCC
Q 026506          101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV-RDIQGQGFPDEF  178 (237)
Q Consensus       101 ~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~  178 (237)
                      ++.+....+.+|+.+|+|. |......+...  ..+++.+|.+++..+...+.   .+.    .... .+.. ...    
T Consensus        13 ~~~~~~~~~~~v~iiG~G~iG~~~a~~l~~~--g~~v~v~~r~~~~~~~~a~~---~~~----~~~~~~~~~-~~~----   78 (144)
T 3oj0_A           13 YDIVRKNGGNKILLVGNGMLASEIAPYFSYP--QYKVTVAGRNIDHVRAFAEK---YEY----EYVLINDID-SLI----   78 (144)
T ss_dssp             HHHHHHHCCCEEEEECCSHHHHHHGGGCCTT--TCEEEEEESCHHHHHHHHHH---HTC----EEEECSCHH-HHH----
T ss_pred             HHHHHhccCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHHHHH---hCC----ceEeecCHH-HHh----
Confidence            3344444589999999866 33332222222  24599999998877654333   231    2111 1211 111    


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                       ..+|+|+...+.+...+..  ..+++|+.++-++
T Consensus        79 -~~~Divi~at~~~~~~~~~--~~l~~g~~vid~~  110 (144)
T 3oj0_A           79 -KNNDVIITATSSKTPIVEE--RSLMPGKLFIDLG  110 (144)
T ss_dssp             -HTCSEEEECSCCSSCSBCG--GGCCTTCEEEECC
T ss_pred             -cCCCEEEEeCCCCCcEeeH--HHcCCCCEEEEcc
Confidence             3589999877765433332  6778888777543

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=94.62  E-value=0.26  Score=38.33  Aligned_cols=106  Identities=12%  Similarity=0.148  Sum_probs=64.9

Q ss_pred             CCCEEEEEccCcc-HHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC------CC
Q 026506          108 PGCLVLESGTGSG-SLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EF  178 (237)
Q Consensus       108 ~~~~vldiG~G~G-~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~------~~  178 (237)
                      .|.++|.-|++++ +++..+++.+ ....+|+.++.+++.++.+.+.++..+-.. ..+...|+.+.. ...      ..
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~-~~~~~~Dv~~~~~v~~~~~~~~~~   83 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPE-AHLYQIDVQSDEEVINGFEQIGKD   83 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSS-CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCc-EEEEEccCCCHHHHHHHHHHHHHH
Confidence            4789999996431 3333333332 124789999999988888877776655433 677788886510 000      01


Q ss_pred             CCCCCEEEEeCCCh----------------h------------chHHHHHhcccCCCEEEEEeC
Q 026506          179 SGLADSIFLDLPQP----------------W------------LAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       179 ~~~~D~v~~~~~~~----------------~------------~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      -++.|+++.+....                |            ...+.+...++.+|.++.++.
T Consensus        84 ~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS  147 (256)
T 4fs3_A           84 VGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTY  147 (256)
T ss_dssp             HCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEEC
T ss_pred             hCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEec
Confidence            15799988764310                0            122345667788999987753

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=94.59  E-value=0.2  Score=39.46  Aligned_cols=105  Identities=16%  Similarity=0.151  Sum_probs=64.6

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCC------------HHHHHHHHHHHHHcCCCCcEEEEEccccCCC-
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFH------------EQRAASAREDFERTGVSSFVTVGVRDIQGQG-  173 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~------------~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-  173 (237)
                      .+.++|..|++. +++.++++.+ ....+|+.+|.+            .+.++.+...+...+  ..+.+...|+.+.. 
T Consensus         9 ~gk~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~   85 (287)
T 3pxx_A            9 QDKVVLVTGGAR-GQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRAA   85 (287)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHH
T ss_pred             CCCEEEEeCCCC-hHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHHH
Confidence            467889888765 4444444332 234689999987            666666666555544  34888888987511 


Q ss_pred             CCCC------CCCCCCEEEEeCCCh----------------------hchHHHHHhcccCCCEEEEEeCC
Q 026506          174 FPDE------FSGLADSIFLDLPQP----------------------WLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       174 ~~~~------~~~~~D~v~~~~~~~----------------------~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      ....      ..++.|+++.+....                      ..+++.+.+.|+.+|.++.++..
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~  155 (287)
T 3pxx_A           86 VSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSV  155 (287)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCH
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccc
Confidence            1000      014689988765310                      12456677778888998877653

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=94.48  E-value=0.098  Score=44.20  Aligned_cols=90  Identities=14%  Similarity=0.139  Sum_probs=56.9

Q ss_pred             CCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          106 LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       106 ~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      .-.|.+|+.+|.|. |......++.+  ..+|+++|.++.....+..    .|.    ++  .++. ..+     ...|+
T Consensus       244 ~L~GKTVgVIG~G~IGr~vA~~lraf--Ga~Viv~d~dp~~a~~A~~----~G~----~v--v~Le-ElL-----~~ADI  305 (464)
T 3n58_A          244 MMAGKVAVVCGYGDVGKGSAQSLAGA--GARVKVTEVDPICALQAAM----DGF----EV--VTLD-DAA-----STADI  305 (464)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHHH----TTC----EE--CCHH-HHG-----GGCSE
T ss_pred             cccCCEEEEECcCHHHHHHHHHHHHC--CCEEEEEeCCcchhhHHHh----cCc----ee--ccHH-HHH-----hhCCE
Confidence            45789999999999 66666667665  3689999999875444332    232    22  1221 111     34788


Q ss_pred             EEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          185 IFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       185 v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      |+...+...-+-++.+..||+|++|+-.+
T Consensus       306 Vv~atgt~~lI~~e~l~~MK~GAILINvG  334 (464)
T 3n58_A          306 VVTTTGNKDVITIDHMRKMKDMCIVGNIG  334 (464)
T ss_dssp             EEECCSSSSSBCHHHHHHSCTTEEEEECS
T ss_pred             EEECCCCccccCHHHHhcCCCCeEEEEcC
Confidence            77655443323367778888888887444

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=94.47  E-value=0.77  Score=36.22  Aligned_cols=81  Identities=11%  Similarity=0.054  Sum_probs=51.4

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC-CC-C---C---CC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GF-P---D---EF  178 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~-~---~---~~  178 (237)
                      .+.++|..|++ |+++.++++.+ ....+|++++.+++..+.+.+.+...+-. .+.+...|+.+. .. .   .   ..
T Consensus        11 ~~k~vlITGas-~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dl~~~~~~v~~~~~~~~~~   88 (311)
T 3o26_A           11 KRRCAVVTGGN-KGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHE-NVVFHQLDVTDPIATMSSLADFIKTH   88 (311)
T ss_dssp             -CCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCC-SEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEccCCCcHHHHHHHHHHHHHh
Confidence            46788888865 44554554443 23468999999998887777766554433 488899998752 10 0   0   00


Q ss_pred             CCCCCEEEEeCC
Q 026506          179 SGLADSIFLDLP  190 (237)
Q Consensus       179 ~~~~D~v~~~~~  190 (237)
                      .+++|++|.+..
T Consensus        89 ~g~iD~lv~nAg  100 (311)
T 3o26_A           89 FGKLDILVNNAG  100 (311)
T ss_dssp             HSSCCEEEECCC
T ss_pred             CCCCCEEEECCc
Confidence            147999988764

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=94.19  E-value=0.14  Score=40.95  Aligned_cols=81  Identities=15%  Similarity=0.119  Sum_probs=52.3

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCCC------C
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE------F  178 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~------~  178 (237)
                      ..+.++|..|++. +++..++..+ ....+|+.++.+++.++.+.+.+...+  ..+.+...|+.+.. ....      .
T Consensus        29 l~gk~vlVTGas~-gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (301)
T 3tjr_A           29 FDGRAAVVTGGAS-GIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFRL  105 (301)
T ss_dssp             STTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence            3577899988765 4444444433 224689999999998888777766554  34888888987511 1100      0


Q ss_pred             CCCCCEEEEeCC
Q 026506          179 SGLADSIFLDLP  190 (237)
Q Consensus       179 ~~~~D~v~~~~~  190 (237)
                      .+++|+++.+..
T Consensus       106 ~g~id~lvnnAg  117 (301)
T 3tjr_A          106 LGGVDVVFSNAG  117 (301)
T ss_dssp             HSSCSEEEECCC
T ss_pred             CCCCCEEEECCC
Confidence            146899987654

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=94.17  E-value=0.22  Score=38.87  Aligned_cols=82  Identities=16%  Similarity=0.172  Sum_probs=50.6

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC--CCCCCCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD--EFSGLAD  183 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~--~~~~~~D  183 (237)
                      .+.++|..|++ |+++.++++.+ ....+|+.++.+++.++...+.+...+....+.....|+.+.. ...  ..-++.|
T Consensus         9 ~~k~~lVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id   87 (267)
T 3t4x_A            9 KGKTALVTGST-AGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVD   87 (267)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCS
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCC
Confidence            46788888765 44554554433 2346899999999888777666655443344777888876511 000  0114789


Q ss_pred             EEEEeCC
Q 026506          184 SIFLDLP  190 (237)
Q Consensus       184 ~v~~~~~  190 (237)
                      +++.+..
T Consensus        88 ~lv~nAg   94 (267)
T 3t4x_A           88 ILINNLG   94 (267)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9887653

>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}

Probab=94.05  E-value=0.046  Score=43.06  Aligned_cols=57  Identities=18%  Similarity=0.233  Sum_probs=43.0

Q ss_pred             CCCCEEEEeCCChh----------------chHHHHHhcccCCCEEEEEeCCHH--HHHHHHHHHHhcCcccccc
Q 026506          180 GLADSIFLDLPQPW----------------LAIPSAKKMLKQDGILCSFSPCIE--QVQRSCESLRLNFTGKESC  236 (237)
Q Consensus       180 ~~~D~v~~~~~~~~----------------~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~l~~~f~~v~~~  236 (237)
                      +++|+|++|+..+-                -++..+.+.|+|||.+++-.-...  ..+.+...++..|..+++|
T Consensus       205 ~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~KvyggaDr~se~lv~~LaR~F~~Vr~v  279 (320)
T 2hwk_A          205 PKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADRASESIIGAIARQFKFSRVC  279 (320)
T ss_dssp             CCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTTEEEEEEE
T ss_pred             CcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCCcccHHHHHHHHHHhcceeeee
Confidence            67999999976331                146678899999999986654444  6788888888888877764

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=94.00  E-value=1.1  Score=35.26  Aligned_cols=92  Identities=21%  Similarity=0.210  Sum_probs=54.9

Q ss_pred             CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506          110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD  188 (237)
Q Consensus       110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~  188 (237)
                      .+|..||+|. |......+...+...+|+++|.+++..+.+++    .+...   ....|.. ...     ...|+|++.
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g~~~---~~~~~~~-~~~-----~~aDvVila   73 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE----RGIVD---EATADFK-VFA-----ALADVIILA   73 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH----TTSCS---EEESCTT-TTG-----GGCSEEEEC
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH----cCCcc---cccCCHH-Hhh-----cCCCEEEEc
Confidence            5899999988 54433333333324689999999988776654    34321   1122222 111     358999998


Q ss_pred             CCChh--chHHHHHhc-ccCCCEEEEEeC
Q 026506          189 LPQPW--LAIPSAKKM-LKQDGILCSFSP  214 (237)
Q Consensus       189 ~~~~~--~~l~~~~~~-L~~gG~l~~~~~  214 (237)
                      .+...  ++++.+... ++++..++..+.
T Consensus        74 vp~~~~~~v~~~l~~~~l~~~~ivi~~~~  102 (290)
T 3b1f_A           74 VPIKKTIDFIKILADLDLKEDVIITDAGS  102 (290)
T ss_dssp             SCHHHHHHHHHHHHTSCCCTTCEEECCCS
T ss_pred             CCHHHHHHHHHHHHhcCCCCCCEEEECCC
Confidence            87543  456666667 777766654333

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=94.00  E-value=0.36  Score=38.86  Aligned_cols=103  Identities=16%  Similarity=0.128  Sum_probs=57.8

Q ss_pred             CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC---cEEEEE-ccccCCCCCCCCCCCC
Q 026506          108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS---FVTVGV-RDIQGQGFPDEFSGLA  182 (237)
Q Consensus       108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~---~i~~~~-~d~~~~~~~~~~~~~~  182 (237)
                      ...+|..+|+|. |......+...  ...|+.+ .+++.++..++.    +...   ...+.. ..+. .....  ...+
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~--G~~V~l~-~~~~~~~~i~~~----g~~~~~~~~~~~~~~~~~-~~~~~--~~~~   87 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARA--GHEVILI-ARPQHVQAIEAT----GLRLETQSFDEQVKVSAS-SDPSA--VQGA   87 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHT--TCEEEEE-CCHHHHHHHHHH----CEEEECSSCEEEECCEEE-SCGGG--GTTC
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHC--CCeEEEE-EcHhHHHHHHhC----CeEEEcCCCcEEEeeeee-CCHHH--cCCC
Confidence            346899999998 55444433332  3578888 888888777653    3100   001100 0000 11111  1468


Q ss_pred             CEEEEeCCChh--chHHHHHhcccCCCEEEEEeCCHHHHH
Q 026506          183 DSIFLDLPQPW--LAIPSAKKMLKQDGILCSFSPCIEQVQ  220 (237)
Q Consensus       183 D~v~~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~~~~  220 (237)
                      |+|++..+...  ++++.+...++++..++......+..+
T Consensus        88 D~vilavk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~  127 (318)
T 3hwr_A           88 DLVLFCVKSTDTQSAALAMKPALAKSALVLSLQNGVENAD  127 (318)
T ss_dssp             SEEEECCCGGGHHHHHHHHTTTSCTTCEEEEECSSSSHHH
T ss_pred             CEEEEEcccccHHHHHHHHHHhcCCCCEEEEeCCCCCcHH
Confidence            99999877542  467777778888877776654444333

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=93.86  E-value=0.28  Score=38.11  Aligned_cols=81  Identities=25%  Similarity=0.354  Sum_probs=49.9

Q ss_pred             CCCEEEEEcc-CccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC------CC
Q 026506          108 PGCLVLESGT-GSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EF  178 (237)
Q Consensus       108 ~~~~vldiG~-G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~------~~  178 (237)
                      .+.++|..|+ |.|. +..+++.+ ....+|+.++.+++.++...+.+...+. ..+.+...|+.+.. ...      ..
T Consensus        21 ~~k~vlITGasg~GI-G~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~   98 (266)
T 3o38_A           21 KGKVVLVTAAAGTGI-GSTTARRALLEGADVVISDYHERRLGETRDQLADLGL-GRVEAVVCDVTSTEAVDALITQTVEK   98 (266)
T ss_dssp             TTCEEEESSCSSSSH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCS-SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCch-HHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCC-CceEEEEeCCCCHHHHHHHHHHHHHH
Confidence            4678999987 5432 22222221 1247899999999888877776654442 34888999987511 100      00


Q ss_pred             CCCCCEEEEeCC
Q 026506          179 SGLADSIFLDLP  190 (237)
Q Consensus       179 ~~~~D~v~~~~~  190 (237)
                      .+++|+++.+..
T Consensus        99 ~g~id~li~~Ag  110 (266)
T 3o38_A           99 AGRLDVLVNNAG  110 (266)
T ss_dssp             HSCCCEEEECCC
T ss_pred             hCCCcEEEECCC
Confidence            146899987654

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=93.80  E-value=0.4  Score=37.95  Aligned_cols=105  Identities=17%  Similarity=0.202  Sum_probs=62.9

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHH-HHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC------CC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQ-RAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EF  178 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~------~~  178 (237)
                      .+.++|..|++. +++.++++.+ ....+|+.++.+++ ..+...+..+..+  ..+.+...|+.+.. ...      ..
T Consensus        46 ~gk~vlVTGas~-GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           46 KGKNVLITGGDS-GIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVRQ  122 (291)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            467899988654 4444444433 22468989988765 3444444444334  34888888987511 000      00


Q ss_pred             CCCCCEEEEeCCCh-------------------------hchHHHHHhcccCCCEEEEEeCC
Q 026506          179 SGLADSIFLDLPQP-------------------------WLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       179 ~~~~D~v~~~~~~~-------------------------~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      .+..|+++.+....                         ..+++.+.+.|+++|+++.++..
T Consensus       123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~  184 (291)
T 3ijr_A          123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASI  184 (291)
T ss_dssp             HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCT
T ss_pred             cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEech
Confidence            14689988764310                         12466677888889998877654

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=93.78  E-value=1.3  Score=35.44  Aligned_cols=99  Identities=21%  Similarity=0.160  Sum_probs=51.3

Q ss_pred             EEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC-CCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506          111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG-VSSFVTVGVRDIQGQGFPDEFSGLADSIFLD  188 (237)
Q Consensus       111 ~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~  188 (237)
                      +|..+|+|. |......+...+....++.+|++++.++.....+.... ......+...|.  ..+     ...|+|++.
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~--~a~-----~~aDvVIi~   74 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGH--SEL-----ADAQVVILT   74 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECG--GGG-----TTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCH--HHh-----CCCCEEEEc
Confidence            688999988 44433333332223489999999886653222221111 111133332332  112     458999987


Q ss_pred             CCCh------------------hchHHHHHhcccCCCEEEEEeCCHH
Q 026506          189 LPQP------------------WLAIPSAKKMLKQDGILCSFSPCIE  217 (237)
Q Consensus       189 ~~~~------------------~~~l~~~~~~L~~gG~l~~~~~~~~  217 (237)
                      .+.+                  .+.++.+.+. .|++.+++++....
T Consensus        75 ~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~~tNP~~  120 (304)
T 2v6b_A           75 AGANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLVTSNPVD  120 (304)
T ss_dssp             C------------CHHHHHHHHHHHHHHHHHH-CSSSEEEECSSSHH
T ss_pred             CCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEEecCchH
Confidence            6322                  1233444444 69998876554343

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=93.78  E-value=0.38  Score=41.15  Aligned_cols=90  Identities=17%  Similarity=0.244  Sum_probs=57.2

Q ss_pred             CCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       107 ~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      -.|.+++.+|+|. |......+...  ..+|+++|.++...+.+..    .+.    ++  .+.. . ..    ..+|++
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~--GA~Viv~D~~~~~a~~Aa~----~g~----dv--~~le-e-~~----~~aDvV  324 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQA--GARVIVTEIDPICALQATM----EGL----QV--LTLE-D-VV----SEADIF  324 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTC----EE--CCGG-G-TT----TTCSEE
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH----hCC----cc--CCHH-H-HH----HhcCEE
Confidence            4689999999985 44444444444  3589999999877665554    231    11  2222 1 11    458998


Q ss_pred             EEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          186 FLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +........+-....+.+++++.++-.+.
T Consensus       325 i~atG~~~vl~~e~l~~mk~gaiVvNaG~  353 (488)
T 3ond_A          325 VTTTGNKDIIMLDHMKKMKNNAIVCNIGH  353 (488)
T ss_dssp             EECSSCSCSBCHHHHTTSCTTEEEEESSS
T ss_pred             EeCCCChhhhhHHHHHhcCCCeEEEEcCC
Confidence            87655444344558889999998876554

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=93.74  E-value=0.22  Score=34.42  Aligned_cols=99  Identities=8%  Similarity=-0.020  Sum_probs=54.0

Q ss_pred             CCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC-CCCCCCCCCCCEEE
Q 026506          109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GFPDEFSGLADSIF  186 (237)
Q Consensus       109 ~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~~~D~v~  186 (237)
                      +.+|+.+|+|. |......+...  ..+++++|.+++..+.+++    .+    ..+..+|..+. .+.......+|+|+
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~--g~~v~~~d~~~~~~~~~~~----~~----~~~~~~d~~~~~~l~~~~~~~~d~vi   75 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRM--GHEVLAVDINEEKVNAYAS----YA----THAVIANATEENELLSLGIRNFEYVI   75 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT--TCCCEEEESCHHHHHTTTT----TC----SEEEECCTTCHHHHHTTTGGGCSEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----hC----CEEEEeCCCCHHHHHhcCCCCCCEEE
Confidence            45799999866 44443333332  2578999998876654332    12    23455665431 01110014699999


Q ss_pred             EeCCCh-h--chHHHHHhcccCCCEEEEEeCCHHH
Q 026506          187 LDLPQP-W--LAIPSAKKMLKQDGILCSFSPCIEQ  218 (237)
Q Consensus       187 ~~~~~~-~--~~l~~~~~~L~~gG~l~~~~~~~~~  218 (237)
                      ...+.+ .  ..+....+.+.+. .++........
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~-~ii~~~~~~~~  109 (144)
T 2hmt_A           76 VAIGANIQASTLTTLLLKELDIP-NIWVKAQNYYH  109 (144)
T ss_dssp             ECCCSCHHHHHHHHHHHHHTTCS-EEEEECCSHHH
T ss_pred             ECCCCchHHHHHHHHHHHHcCCC-eEEEEeCCHHH
Confidence            887754 2  1333444555665 66655554433

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=93.73  E-value=0.46  Score=37.04  Aligned_cols=80  Identities=18%  Similarity=0.140  Sum_probs=51.4

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC------CCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFS  179 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~------~~~  179 (237)
                      .|.++|.-|++.| ++..++..+ ....+|+..|.+++.++.+.+.+...+.  +......|+.+.. ...      ...
T Consensus         8 ~gKvalVTGas~G-IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (255)
T 4g81_D            8 TGKTALVTGSARG-LGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGY--DAHGVAFDVTDELAIEAAFSKLDAEG   84 (255)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTC--CEEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence            4778888776654 444444333 2347899999999988888777766653  3777788886510 000      112


Q ss_pred             CCCCEEEEeCC
Q 026506          180 GLADSIFLDLP  190 (237)
Q Consensus       180 ~~~D~v~~~~~  190 (237)
                      ++.|+++.+..
T Consensus        85 G~iDiLVNNAG   95 (255)
T 4g81_D           85 IHVDILINNAG   95 (255)
T ss_dssp             CCCCEEEECCC
T ss_pred             CCCcEEEECCC
Confidence            67999887653

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=93.57  E-value=0.056  Score=43.24  Aligned_cols=50  Identities=16%  Similarity=0.129  Sum_probs=37.3

Q ss_pred             EEEEEccccC--CCCCCCCCCCCCEEEEeCCCh-------------------------hchHHHHHhcccCCCEEEEEeC
Q 026506          162 VTVGVRDIQG--QGFPDEFSGLADSIFLDLPQP-------------------------WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       162 i~~~~~d~~~--~~~~~~~~~~~D~v~~~~~~~-------------------------~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +.+.++|..+  ..++.   ++||+|+.|+|-.                         ...++++.++|+|||.+++...
T Consensus        22 ~~i~~gD~~~~l~~l~~---~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~   98 (297)
T 2zig_A           22 HRLHVGDAREVLASFPE---ASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG   98 (297)
T ss_dssp             EEEEESCHHHHHTTSCT---TCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CEEEECcHHHHHhhCCC---CceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence            7889999875  22333   6899999998731                         1246788999999999987754

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=93.54  E-value=0.07  Score=43.25  Aligned_cols=68  Identities=15%  Similarity=0.079  Sum_probs=46.2

Q ss_pred             cEEEEEccccC--CCCCCCCCCCCCEEEEeCCCh-------------------hchHHHHHhcccCCCEEEEEeCCH---
Q 026506          161 FVTVGVRDIQG--QGFPDEFSGLADSIFLDLPQP-------------------WLAIPSAKKMLKQDGILCSFSPCI---  216 (237)
Q Consensus       161 ~i~~~~~d~~~--~~~~~~~~~~~D~v~~~~~~~-------------------~~~l~~~~~~L~~gG~l~~~~~~~---  216 (237)
                      ...+..+|..+  ..++.   +++|+|+.|+|-.                   ...++.+.++|+|||.+++.....   
T Consensus        14 ~~~ii~gD~~~~l~~l~~---~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~   90 (323)
T 1boo_A           14 NGSMYIGDSLELLESFPE---ESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMK   90 (323)
T ss_dssp             SEEEEESCHHHHGGGSCS---SCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEET
T ss_pred             CceEEeCcHHHHHhhCCC---CCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecC
Confidence            36788888764  12333   7899999998831                   246788899999999998765432   


Q ss_pred             -------HHHHHHHHHHHh-cCc
Q 026506          217 -------EQVQRSCESLRL-NFT  231 (237)
Q Consensus       217 -------~~~~~~~~~l~~-~f~  231 (237)
                             .....++..+++ ||.
T Consensus        91 g~~~~~~~~~~~i~~~~~~~Gf~  113 (323)
T 1boo_A           91 GVPARSIYNFRVLIRMIDEVGFF  113 (323)
T ss_dssp             TEEEECCHHHHHHHHHHHTTCCE
T ss_pred             CCcccccchHHHHHHHHHhCCCE
Confidence                   234555555565 664

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=93.51  E-value=0.21  Score=38.75  Aligned_cols=101  Identities=17%  Similarity=0.225  Sum_probs=62.7

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC------CCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFS  179 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~------~~~  179 (237)
                      .+.++|..|++. +++.++++.+ ....+|+.++.+++.++...+..   +  ..+.+...|+.+.. ...      ...
T Consensus         7 ~gk~~lVTGas~-gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (255)
T 4eso_A            7 QGKKAIVIGGTH-GMGLATVRRLVEGGAEVLLTGRNESNIARIREEF---G--PRVHALRSDIADLNEIAVLGAAAGQTL   80 (255)
T ss_dssp             TTCEEEEETCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---G--GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CcceEEEccCCCHHHHHHHHHHHHHHh
Confidence            467889888655 4444444433 23468999999988877666543   2  34788888887511 100      001


Q ss_pred             CCCCEEEEeCCCh------------------------hchHHHHHhcccCCCEEEEEeC
Q 026506          180 GLADSIFLDLPQP------------------------WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       180 ~~~D~v~~~~~~~------------------------~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ++.|+++.+....                        ..+.+.+.+.++++|.++.++.
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS  139 (255)
T 4eso_A           81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSS  139 (255)
T ss_dssp             SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECC
Confidence            4689988765311                        1245666777788899887753

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=93.50  E-value=0.64  Score=38.08  Aligned_cols=78  Identities=13%  Similarity=0.154  Sum_probs=48.6

Q ss_pred             CCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCH-------------------HHHHHHHHHHHHcCCCCcEEEEEcc
Q 026506          109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHE-------------------QRAASAREDFERTGVSSFVTVGVRD  168 (237)
Q Consensus       109 ~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~i~~~~~d  168 (237)
                      ..+|+.+|||. |......+... +-++++.+|.+.                   ...+.+++++...+-.-.++....+
T Consensus       118 ~~~VlvvG~GglGs~va~~La~a-Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~  196 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATS-GIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIALN  196 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH-TCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEECC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC-CCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEeecc
Confidence            67999999987 65554444444 447899998642                   3566777777665533346666655


Q ss_pred             ccCCC-CCCCCCCCCCEEEEeC
Q 026506          169 IQGQG-FPDEFSGLADSIFLDL  189 (237)
Q Consensus       169 ~~~~~-~~~~~~~~~D~v~~~~  189 (237)
                      +.... +..  -..+|+|+...
T Consensus       197 i~~~~~~~~--~~~~DlVvd~~  216 (353)
T 3h5n_A          197 INDYTDLHK--VPEADIWVVSA  216 (353)
T ss_dssp             CCSGGGGGG--SCCCSEEEECC
T ss_pred             cCchhhhhH--hccCCEEEEec
Confidence            54322 222  25799987644

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=93.48  E-value=2  Score=34.32  Aligned_cols=106  Identities=13%  Similarity=0.098  Sum_probs=55.4

Q ss_pred             CCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHH-HHHHHHHcCCCCcEEEEEc-cccCCCCCCCCCCCCCEE
Q 026506          109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAAS-AREDFERTGVSSFVTVGVR-DIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       109 ~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~-a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~~~~D~v  185 (237)
                      ..+|..+|+|. |......+...+....|+.+|.+++.++. +.+............+... |..  .+     ..+|+|
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~-----~~aD~V   79 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPE--IC-----RDADMV   79 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGG--GG-----TTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHH--Hh-----CCCCEE
Confidence            46899999988 55443333332222389999999876652 2211111111011233222 221  12     458999


Q ss_pred             EEeCCChh------------------chHHHHHhcccCCCEEEEEeCCHHHHHHH
Q 026506          186 FLDLPQPW------------------LAIPSAKKMLKQDGILCSFSPCIEQVQRS  222 (237)
Q Consensus       186 ~~~~~~~~------------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~  222 (237)
                      ++....+.                  +.++.+.+. .|++.++.+..........
T Consensus        80 ii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~~~~~~  133 (319)
T 1lld_A           80 VITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDIATHV  133 (319)
T ss_dssp             EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHHHHHH
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchHHHHHH
Confidence            98763221                  345555553 6888887665545444333

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=93.48  E-value=0.22  Score=40.15  Aligned_cols=102  Identities=12%  Similarity=0.026  Sum_probs=60.0

Q ss_pred             HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      ....+......+++.||+|. |......+....+..+|.+.|.+ ..-+.+++.-...+..  +...  |..+ ..    
T Consensus       112 aa~~La~~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~~~~g~~--~~~~--~~~e-av----  181 (313)
T 3hdj_A          112 AAGALARPRSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIGRRCGVP--ARMA--APAD-IA----  181 (313)
T ss_dssp             HHHHHSCTTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHHHHHTSC--EEEC--CHHH-HH----
T ss_pred             HHHhhccCCCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHHHhcCCe--EEEe--CHHH-HH----
Confidence            34555556678999999998 65544433333455789999998 4444444432233532  2222  4321 11    


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                       ...|+|+...+.....+.  ...++||..+..++.
T Consensus       182 -~~aDIVi~aT~s~~pvl~--~~~l~~G~~V~~vGs  214 (313)
T 3hdj_A          182 -AQADIVVTATRSTTPLFA--GQALRAGAFVGAIGS  214 (313)
T ss_dssp             -HHCSEEEECCCCSSCSSC--GGGCCTTCEEEECCC
T ss_pred             -hhCCEEEEccCCCCcccC--HHHcCCCcEEEECCC
Confidence             348998887765544443  356788877775544

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=93.45  E-value=0.75  Score=36.32  Aligned_cols=81  Identities=12%  Similarity=0.054  Sum_probs=50.7

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh---C-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC--------CC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV---A-PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--------FP  175 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~---~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~  175 (237)
                      .+.++|..|++. +++..++..+   + ...+|+.++.+++.++.+.+.+........+.+...|+.+..        ..
T Consensus        32 ~~k~~lVTGas~-GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~  110 (287)
T 3rku_A           32 AKKTVLITGASA-GIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLP  110 (287)
T ss_dssp             TTCEEEEESTTS-HHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSC
T ss_pred             CCCEEEEecCCC-hHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence            467899988665 4444444332   1 123899999999888877776654422234788888887511        11


Q ss_pred             CCCCCCCCEEEEeCC
Q 026506          176 DEFSGLADSIFLDLP  190 (237)
Q Consensus       176 ~~~~~~~D~v~~~~~  190 (237)
                      . ..++.|+++.+..
T Consensus       111 ~-~~g~iD~lVnnAG  124 (287)
T 3rku_A          111 Q-EFKDIDILVNNAG  124 (287)
T ss_dssp             G-GGCSCCEEEECCC
T ss_pred             H-hcCCCCEEEECCC
Confidence            1 1147999987653

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=93.45  E-value=0.24  Score=41.75  Aligned_cols=90  Identities=16%  Similarity=0.168  Sum_probs=56.9

Q ss_pred             CCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       107 ~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      -.|.+|..+|.|. |......++.++  .+|+++|.++.....+..    .|.    ..  .++. ..+     ...|+|
T Consensus       209 L~GktVgIiG~G~IG~~vA~~Lka~G--a~Viv~D~~p~~a~~A~~----~G~----~~--~sL~-eal-----~~ADVV  270 (436)
T 3h9u_A          209 IAGKTACVCGYGDVGKGCAAALRGFG--ARVVVTEVDPINALQAAM----EGY----QV--LLVE-DVV-----EEAHIF  270 (436)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHH----TTC----EE--CCHH-HHT-----TTCSEE
T ss_pred             ccCCEEEEEeeCHHHHHHHHHHHHCC--CEEEEECCChhhhHHHHH----hCC----ee--cCHH-HHH-----hhCCEE
Confidence            4688999999999 666666666653  689999999876555443    232    11  1222 111     347888


Q ss_pred             EEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          186 FLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +.......-+-+...+.||+|++++-.+.
T Consensus       271 ilt~gt~~iI~~e~l~~MK~gAIVINvgR  299 (436)
T 3h9u_A          271 VTTTGNDDIITSEHFPRMRDDAIVCNIGH  299 (436)
T ss_dssp             EECSSCSCSBCTTTGGGCCTTEEEEECSS
T ss_pred             EECCCCcCccCHHHHhhcCCCcEEEEeCC
Confidence            76554333223366778888887775543

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=93.41  E-value=2.4  Score=33.75  Aligned_cols=77  Identities=16%  Similarity=0.137  Sum_probs=42.3

Q ss_pred             CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-cC-CCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER-TG-VSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~-~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      .+|..+|+|. |......+...+....++.+|.+++.++.....+.. .. ....+.+...|..  .+     ...|+|+
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~--~~-----~~aDvVi   74 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWA--AL-----ADADVVI   74 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGG--GG-----TTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCHH--Hh-----CCCCEEE
Confidence            3788999988 544333333322125899999999877655433221 10 1111333233431  12     4589999


Q ss_pred             EeCCChh
Q 026506          187 LDLPQPW  193 (237)
Q Consensus       187 ~~~~~~~  193 (237)
                      +..+.+.
T Consensus        75 iav~~~~   81 (309)
T 1hyh_A           75 STLGNIK   81 (309)
T ss_dssp             ECCSCGG
T ss_pred             EecCCcc
Confidence            8776543

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=93.36  E-value=0.61  Score=36.15  Aligned_cols=106  Identities=14%  Similarity=0.131  Sum_probs=63.5

Q ss_pred             CCCEEEEEccCcc-HHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC------CC
Q 026506          108 PGCLVLESGTGSG-SLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EF  178 (237)
Q Consensus       108 ~~~~vldiG~G~G-~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~------~~  178 (237)
                      .+.++|..|++.+ +++..+++.+ ....+|+.++.++...+.+.+.....+.. .+.+...|+.+.. ...      ..
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~   84 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRN-DSIILPCDVTNDAEIETCFASIKEQ   84 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSC-CCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCC-CceEEeCCCCCHHHHHHHHHHHHHH
Confidence            4678999997632 2333333332 12468999998876666666555544432 4788888987521 100      00


Q ss_pred             CCCCCEEEEeCCCh----------------------------hchHHHHHhcccCCCEEEEEeC
Q 026506          179 SGLADSIFLDLPQP----------------------------WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       179 ~~~~D~v~~~~~~~----------------------------~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .+.+|.++.+....                            ..+++.+.+.++++|.++.++.
T Consensus        85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS  148 (266)
T 3oig_A           85 VGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY  148 (266)
T ss_dssp             HSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred             hCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence            14689988764311                            0145567778888999887764

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=93.35  E-value=0.12  Score=44.39  Aligned_cols=78  Identities=10%  Similarity=0.150  Sum_probs=50.9

Q ss_pred             CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC------------
Q 026506          109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD------------  176 (237)
Q Consensus       109 ~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~------------  176 (237)
                      .-+++|+.||.|++...+...  +...++++|+++.+.+.-+.|+...  ++ ..+..+|+.+.....            
T Consensus        88 ~~~viDLFaG~GGlslG~~~a--G~~~v~avE~d~~A~~ty~~N~~~~--p~-~~~~~~DI~~i~~~~~~~~~~~~~~~~  162 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESI--GGQCVFTSEWNKHAVRTYKANHYCD--PA-THHFNEDIRDITLSHQEGVSDEAAAEH  162 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTT--TEEEEEEECCCHHHHHHHHHHSCCC--TT-TCEEESCTHHHHCTTCTTSCHHHHHHH
T ss_pred             cceEEEecCCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHhcccC--CC-cceeccchhhhhhccccccchhhHHhh
Confidence            468999999999999777654  3356899999999988888774211  11 334557765411100            


Q ss_pred             --CCCCCCCEEEEeCCC
Q 026506          177 --EFSGLADSIFLDLPQ  191 (237)
Q Consensus       177 --~~~~~~D~v~~~~~~  191 (237)
                        ...+.+|+++..+|+
T Consensus       163 i~~~~~~~Dvl~gGpPC  179 (482)
T 3me5_A          163 IRQHIPEHDVLLAGFPC  179 (482)
T ss_dssp             HHHHSCCCSEEEEECCC
T ss_pred             hhhcCCCCCEEEecCCC
Confidence              011468998877664

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=93.31  E-value=0.26  Score=39.16  Aligned_cols=104  Identities=16%  Similarity=0.106  Sum_probs=62.0

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCC--HHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC------C
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFH--EQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------E  177 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~------~  177 (237)
                      .+.++|..|++ |+++.++++.+ ....+|+.++.+  +...+...+.....+  ..+.+...|+.+.. ...      .
T Consensus        48 ~~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  124 (294)
T 3r3s_A           48 KDRKALVTGGD-SGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKARE  124 (294)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            46788988865 44554554443 224688888876  344555555554444  34778888886511 000      0


Q ss_pred             CCCCCCEEEEeCCCh-------------------------hchHHHHHhcccCCCEEEEEeC
Q 026506          178 FSGLADSIFLDLPQP-------------------------WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       178 ~~~~~D~v~~~~~~~-------------------------~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ..++.|+++.+....                         ..+++.+.+.++++|+++.++.
T Consensus       125 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS  186 (294)
T 3r3s_A          125 ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSS  186 (294)
T ss_dssp             HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence            014689988765310                         1245667788888999887754

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=93.30  E-value=0.57  Score=36.66  Aligned_cols=104  Identities=17%  Similarity=0.189  Sum_probs=62.2

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCC-HHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC------CC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFH-EQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EF  178 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~------~~  178 (237)
                      .+.++|..|++. +++.++++.+ ....+|+.++.+ .+..+...+.+...+  ..+.+...|+.+.. ...      ..
T Consensus        30 ~gk~~lVTGas~-GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  106 (271)
T 3v2g_A           30 AGKTAFVTGGSR-GIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAEAIEQAIRETVEA  106 (271)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            467899988765 4444444433 224678877554 456666555555444  34788888887511 100      00


Q ss_pred             CCCCCEEEEeCCCh------------------------hchHHHHHhcccCCCEEEEEeC
Q 026506          179 SGLADSIFLDLPQP------------------------WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       179 ~~~~D~v~~~~~~~------------------------~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .++.|+++.+....                        ..+++.+.+.|+++|.++.++.
T Consensus       107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS  166 (271)
T 3v2g_A          107 LGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGS  166 (271)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            14789988765310                        1246667788888999887753

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=93.30  E-value=0.35  Score=36.48  Aligned_cols=94  Identities=11%  Similarity=-0.046  Sum_probs=54.5

Q ss_pred             EEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCCCCCCCCCEEEEe
Q 026506          111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLADSIFLD  188 (237)
Q Consensus       111 ~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~~D~v~~~  188 (237)
                      +|+.+|+|. |......+..  ....|+++|.+++.++...+.   .+    ..+..+|..+.. +....-..+|+|++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~--~g~~v~vid~~~~~~~~l~~~---~~----~~~i~gd~~~~~~l~~a~i~~ad~vi~~   72 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLS--RKYGVVIINKDRELCEEFAKK---LK----ATIIHGDGSHKEILRDAEVSKNDVVVIL   72 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHH---SS----SEEEESCTTSHHHHHHHTCCTTCEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHHHH---cC----CeEEEcCCCCHHHHHhcCcccCCEEEEe
Confidence            578888765 4333333333  236899999999988765442   23    556788876521 111111468999988


Q ss_pred             CCChhc--hHHHHHhcccCCCEEEEEe
Q 026506          189 LPQPWL--AIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       189 ~~~~~~--~l~~~~~~L~~gG~l~~~~  213 (237)
                      .++...  .+....+.+.+...++...
T Consensus        73 ~~~d~~n~~~~~~a~~~~~~~~iia~~   99 (218)
T 3l4b_C           73 TPRDEVNLFIAQLVMKDFGVKRVVSLV   99 (218)
T ss_dssp             CSCHHHHHHHHHHHHHTSCCCEEEECC
T ss_pred             cCCcHHHHHHHHHHHHHcCCCeEEEEE
Confidence            776542  2333444455666666443

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=93.20  E-value=0.61  Score=37.66  Aligned_cols=98  Identities=17%  Similarity=0.207  Sum_probs=58.1

Q ss_pred             HhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506          102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG  180 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  180 (237)
                      ..+......+++.+|+|. |......+....+..++..+|.+++..+...+.+...++ . +.  ..|..+ ..      
T Consensus       118 ~~la~~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~-~-~~--~~~~~e-~v------  186 (322)
T 1omo_A          118 KYLARKNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGI-S-AS--VQPAEE-AS------  186 (322)
T ss_dssp             HHHSCTTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTC-C-EE--ECCHHH-HT------
T ss_pred             HhccCCCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCc-e-EE--ECCHHH-Hh------
Confidence            344445678999999987 544433333333457899999999888877766544321 1 22  233221 11      


Q ss_pred             CCCEEEEeCCChhchHHHHHhcccCCCEEEEE
Q 026506          181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       181 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                      .+|+|+...+.....+.  ...|+||-.++..
T Consensus       187 ~aDvVi~aTp~~~pv~~--~~~l~~G~~V~~i  216 (322)
T 1omo_A          187 RCDVLVTTTPSRKPVVK--AEWVEEGTHINAI  216 (322)
T ss_dssp             SSSEEEECCCCSSCCBC--GGGCCTTCEEEEC
T ss_pred             CCCEEEEeeCCCCceec--HHHcCCCeEEEEC
Confidence            37998887765443332  2467777666544

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=93.19  E-value=0.078  Score=41.51  Aligned_cols=65  Identities=15%  Similarity=0.130  Sum_probs=41.2

Q ss_pred             EEEEccccC--CCCCCCCCCCCCEEEEeCCChh-------------------chHHHHHhcccCCCEEEEEeCCHHHHHH
Q 026506          163 TVGVRDIQG--QGFPDEFSGLADSIFLDLPQPW-------------------LAIPSAKKMLKQDGILCSFSPCIEQVQR  221 (237)
Q Consensus       163 ~~~~~d~~~--~~~~~~~~~~~D~v~~~~~~~~-------------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~  221 (237)
                      .+..+|..+  ..++.   +++|+|+.|+|-..                   ..++.+.++|+|+|.+++... ......
T Consensus         6 ~l~~gD~~~~l~~l~~---~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~-d~~~~~   81 (260)
T 1g60_A            6 KIHQMNCFDFLDQVEN---KSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNT-PFNCAF   81 (260)
T ss_dssp             SEEECCHHHHHHHSCT---TCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC-HHHHHH
T ss_pred             eEEechHHHHHHhccc---cccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcC-cHHHHH
Confidence            356677653  12233   67999999988321                   356778899999999987753 333444


Q ss_pred             HHHHHHh-cCc
Q 026506          222 SCESLRL-NFT  231 (237)
Q Consensus       222 ~~~~l~~-~f~  231 (237)
                      +...+.+ +|.
T Consensus        82 ~~~~~~~~gf~   92 (260)
T 1g60_A           82 ICQYLVSKGMI   92 (260)
T ss_dssp             HHHHHHHTTCE
T ss_pred             HHHHHHhhccc
Confidence            5555655 563

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=93.17  E-value=0.29  Score=34.60  Aligned_cols=99  Identities=9%  Similarity=-0.092  Sum_probs=55.7

Q ss_pred             CCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCC-HHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCCCCCCCCCEE
Q 026506          109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFH-EQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLADSI  185 (237)
Q Consensus       109 ~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~~D~v  185 (237)
                      ..+|+.+|+|. |......+...  ...|+++|.+ ++..+...+...     ..+.+..+|..+.. +....-..+|.|
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~--g~~V~vid~~~~~~~~~~~~~~~-----~~~~~i~gd~~~~~~l~~a~i~~ad~v   75 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQR--GQNVTVISNLPEDDIKQLEQRLG-----DNADVIPGDSNDSSVLKKAGIDRCRAI   75 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHC-----TTCEEEESCTTSHHHHHHHTTTTCSEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCCEEEEECCChHHHHHHHHhhc-----CCCeEEEcCCCCHHHHHHcChhhCCEE
Confidence            45788888765 44333333332  3679999997 455554443221     12677888876521 111111568999


Q ss_pred             EEeCCChh--chHHHHHhcccCCCEEEEEeC
Q 026506          186 FLDLPQPW--LAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       186 ~~~~~~~~--~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +...++..  ..+....+.+.|...++....
T Consensus        76 i~~~~~d~~n~~~~~~a~~~~~~~~ii~~~~  106 (153)
T 1id1_A           76 LALSDNDADNAFVVLSAKDMSSDVKTVLAVS  106 (153)
T ss_dssp             EECSSCHHHHHHHHHHHHHHTSSSCEEEECS
T ss_pred             EEecCChHHHHHHHHHHHHHCCCCEEEEEEC
Confidence            98776553  233444555666667765443

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=93.15  E-value=1  Score=35.87  Aligned_cols=104  Identities=14%  Similarity=0.103  Sum_probs=61.8

Q ss_pred             CCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506          109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL  187 (237)
Q Consensus       109 ~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~  187 (237)
                      ..+|..||+|. |......+...  ..+|+++|.+++..+.+.+    .|..    ....+..+ ..     ...|+|++
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~--G~~V~~~dr~~~~~~~~~~----~g~~----~~~~~~~e-~~-----~~aDvvi~   70 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRA--GLSTWGADLNPQACANLLA----EGAC----GAAASARE-FA-----GVVDALVI   70 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTCS----EEESSSTT-TT-----TTCSEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHH----cCCc----cccCCHHH-HH-----hcCCEEEE
Confidence            35899999887 54333333332  3589999999988877665    2421    11233321 11     45899999


Q ss_pred             eCCChhc---hH---HHHHhcccCCCEEEEEeCC-HHHHHHHHHHHHh
Q 026506          188 DLPQPWL---AI---PSAKKMLKQDGILCSFSPC-IEQVQRSCESLRL  228 (237)
Q Consensus       188 ~~~~~~~---~l---~~~~~~L~~gG~l~~~~~~-~~~~~~~~~~l~~  228 (237)
                      ..|.+..   .+   +.+...+++|..++-.+.. ....+++.+.+.+
T Consensus        71 ~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~  118 (303)
T 3g0o_A           71 LVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTA  118 (303)
T ss_dssp             CCSSHHHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHT
T ss_pred             ECCCHHHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHH
Confidence            9887642   22   4455677888777654433 2344555556654

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=93.15  E-value=0.37  Score=37.64  Aligned_cols=80  Identities=13%  Similarity=0.185  Sum_probs=50.2

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC------CCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFS  179 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~------~~~  179 (237)
                      .+.++|..|++. +++..++..+ ....+|+.++.+++.++.+.+.+...+  ..+.+...|+.+.. ...      ...
T Consensus         3 ~~k~~lVTGas~-GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   79 (264)
T 3tfo_A            3 MDKVILITGASG-GIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAG--GTALAQVLDVTDRHSVAAFAQAAVDTW   79 (264)
T ss_dssp             TTCEEEESSTTS-HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCcc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            356788887664 4444444433 234689999999988888777766554  34777888886511 100      001


Q ss_pred             CCCCEEEEeCC
Q 026506          180 GLADSIFLDLP  190 (237)
Q Consensus       180 ~~~D~v~~~~~  190 (237)
                      ++.|+++.+..
T Consensus        80 g~iD~lVnnAG   90 (264)
T 3tfo_A           80 GRIDVLVNNAG   90 (264)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            46899887653

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=93.14  E-value=2.8  Score=33.63  Aligned_cols=107  Identities=13%  Similarity=0.051  Sum_probs=56.7

Q ss_pred             CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHH-HHHHHHcCC-CCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASA-REDFERTGV-SSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a-~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      +..+|..+|+|. |......+...+...+++.+|++++..+.. ......... ...+.+...+.  ..+     ...|+
T Consensus         5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~--~al-----~~aDv   77 (316)
T 1ldn_A            5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY--DDC-----RDADL   77 (316)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG--GGT-----TTCSE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcH--HHh-----CCCCE
Confidence            346899999988 543333333323346899999998855532 222221111 11244443222  112     45899


Q ss_pred             EEEeCCChh--------------c----hHHHHHhcccCCCEEEEEeCCHHHHHHH
Q 026506          185 IFLDLPQPW--------------L----AIPSAKKMLKQDGILCSFSPCIEQVQRS  222 (237)
Q Consensus       185 v~~~~~~~~--------------~----~l~~~~~~L~~gG~l~~~~~~~~~~~~~  222 (237)
                      |++..+.+.              .    ..+.+.+. .|++.+++++.....+...
T Consensus        78 Viia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~~iv~tNPv~~~~~~  132 (316)
T 1ldn_A           78 VVICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGLFLVATNPVDILTYA  132 (316)
T ss_dssp             EEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH-TCCSEEEECSSSHHHHHHH
T ss_pred             EEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHH-CCCCEEEEeCCchHHHHHH
Confidence            998654221              1    22233333 5899888776545444433

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=93.07  E-value=0.49  Score=36.89  Aligned_cols=104  Identities=16%  Similarity=0.136  Sum_probs=62.4

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeC-CHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC------CC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDF-HEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EF  178 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~-~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~------~~  178 (237)
                      .+.++|..|++. +++.++++.+ ....+|+.++. +++..+...+.+...+  ..+.+...|+.+.. ...      ..
T Consensus        17 ~~k~~lVTGas~-gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   93 (270)
T 3is3_A           17 DGKVALVTGSGR-GIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAVAH   93 (270)
T ss_dssp             TTCEEEESCTTS-HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            467888888654 4444444433 22467887765 4555666655555544  34788888987511 100      00


Q ss_pred             CCCCCEEEEeCCCh------------------------hchHHHHHhcccCCCEEEEEeC
Q 026506          179 SGLADSIFLDLPQP------------------------WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       179 ~~~~D~v~~~~~~~------------------------~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .++.|+++.+....                        ..+.+.+.+.|+++|+++.++.
T Consensus        94 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS  153 (270)
T 3is3_A           94 FGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS  153 (270)
T ss_dssp             HSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence            14689988764310                        1245667788888999887765

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=93.07  E-value=2.9  Score=33.62  Aligned_cols=107  Identities=15%  Similarity=0.087  Sum_probs=56.5

Q ss_pred             CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-GVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      +..+|..+|+|. |......+...+-..++..+|++++.++....-+... .....+.+...+.  ..+     ...|+|
T Consensus         4 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~--~a~-----~~aDvV   76 (318)
T 1ez4_A            4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY--SDC-----KDADLV   76 (318)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG--GGG-----TTCSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCH--HHh-----CCCCEE
Confidence            447899999988 4433333333233458999999988776422222211 1112244443322  122     458999


Q ss_pred             EEeCCChh--------------chHHHHH---hcccCCCEEEEEeCCHHHHHH
Q 026506          186 FLDLPQPW--------------LAIPSAK---KMLKQDGILCSFSPCIEQVQR  221 (237)
Q Consensus       186 ~~~~~~~~--------------~~l~~~~---~~L~~gG~l~~~~~~~~~~~~  221 (237)
                      ++..+.+.              ..+..+.   ....|+|.+++++.....+..
T Consensus        77 ii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~  129 (318)
T 1ez4_A           77 VITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTY  129 (318)
T ss_dssp             EECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHH
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcHHHHHH
Confidence            87654221              1222222   223799999987654444433

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=93.06  E-value=0.37  Score=40.75  Aligned_cols=113  Identities=14%  Similarity=0.098  Sum_probs=65.0

Q ss_pred             CCEEEEEccCc-cHHHHHHHHHhCCCcEE-EEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc---cccCCCCCCCCCCCCC
Q 026506          109 GCLVLESGTGS-GSLTTSLARAVAPTGHV-YTFDFHEQRAASAREDFERTGVSSFVTVGVR---DIQGQGFPDEFSGLAD  183 (237)
Q Consensus       109 ~~~vldiG~G~-G~~~~~~~~~~~~~~~v-~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~---d~~~~~~~~~~~~~~D  183 (237)
                      ..+|..||+|. |...+...... +..++ .++|.+++..+.+.+.+...++.. ......   |+.+ -+..   ..+|
T Consensus        20 ~~rvgiIG~G~~g~~h~~~l~~~-~~~~lvav~d~~~~~~~~~a~~~~~~g~~~-~~~~~~~~~~~~~-ll~~---~~vD   93 (444)
T 2ixa_A           20 KVRIAFIAVGLRGQTHVENMARR-DDVEIVAFADPDPYMVGRAQEILKKNGKKP-AKVFGNGNDDYKN-MLKD---KNID   93 (444)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTC-TTEEEEEEECSCHHHHHHHHHHHHHTTCCC-CEEECSSTTTHHH-HTTC---TTCC
T ss_pred             CceEEEEecCHHHHHHHHHHHhC-CCcEEEEEEeCCHHHHHHHHHHHHhcCCCC-CceeccCCCCHHH-HhcC---CCCC
Confidence            35899999986 44322222222 34455 466999998887776655555432 222221   3332 1222   4689


Q ss_pred             EEEEeCCChhchHHHHHhcccCCCEEEEEeC---CHHHHHHHHHHHHh
Q 026506          184 SIFLDLPQPWLAIPSAKKMLKQDGILCSFSP---CIEQVQRSCESLRL  228 (237)
Q Consensus       184 ~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~---~~~~~~~~~~~l~~  228 (237)
                      +|++..|... -.+.+.++|+.|--+++--|   ..++.+++.+..++
T Consensus        94 ~V~i~tp~~~-h~~~~~~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~  140 (444)
T 2ixa_A           94 AVFVSSPWEW-HHEHGVAAMKAGKIVGMEVSGAITLEECWDYVKVSEQ  140 (444)
T ss_dssp             EEEECCCGGG-HHHHHHHHHHTTCEEEECCCCCSSHHHHHHHHHHHHH
T ss_pred             EEEEcCCcHH-HHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHH
Confidence            9999887554 45666677776655554333   34555666665555

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=92.98  E-value=0.67  Score=36.01  Aligned_cols=81  Identities=12%  Similarity=0.081  Sum_probs=50.2

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEEccccCCC-CCC------CC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFER-TGVSSFVTVGVRDIQGQG-FPD------EF  178 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~i~~~~~d~~~~~-~~~------~~  178 (237)
                      .+.++|..|++.| ++..+++.+ ....+|+.++.+++.++.+.+.+.. .+- ..+.+...|+.+.. ...      ..
T Consensus         7 ~~k~~lVTGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (265)
T 3lf2_A            7 SEAVAVVTGGSSG-IGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPG-ARLFASVCDVLDALQVRAFAEACERT   84 (265)
T ss_dssp             TTCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTT-CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCC-ceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            4678888886654 444444332 2246899999999888877776654 332 23788888887511 000      00


Q ss_pred             CCCCCEEEEeCC
Q 026506          179 SGLADSIFLDLP  190 (237)
Q Consensus       179 ~~~~D~v~~~~~  190 (237)
                      .++.|+++.+..
T Consensus        85 ~g~id~lvnnAg   96 (265)
T 3lf2_A           85 LGCASILVNNAG   96 (265)
T ss_dssp             HCSCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            146899887653

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=92.94  E-value=2.5  Score=33.88  Aligned_cols=106  Identities=15%  Similarity=0.079  Sum_probs=55.6

Q ss_pred             CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHH-HHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506          110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAAS-AREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL  187 (237)
Q Consensus       110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~-a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~  187 (237)
                      .+|..+|+|. |......+...+...++..+|+++++++. +.+..........+.+...+.  ..+     ...|+|++
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~--~a~-----~~aD~Vii   73 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSY--GDL-----EGARAVVL   73 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCG--GGG-----TTEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCH--HHh-----CCCCEEEE
Confidence            3688999987 44333333332334689999999887764 222211110011244444332  222     45899987


Q ss_pred             eCCChh--------------chHHHHHh---cccCCCEEEEEeCCHHHHHHH
Q 026506          188 DLPQPW--------------LAIPSAKK---MLKQDGILCSFSPCIEQVQRS  222 (237)
Q Consensus       188 ~~~~~~--------------~~l~~~~~---~L~~gG~l~~~~~~~~~~~~~  222 (237)
                      ..+.+.              ..+..+.+   ...|+|.+++++.....+...
T Consensus        74 ~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~  125 (310)
T 2xxj_A           74 AAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQV  125 (310)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHH
T ss_pred             CCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHH
Confidence            554221              12222222   227999999876544444433

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=92.93  E-value=0.14  Score=39.85  Aligned_cols=105  Identities=15%  Similarity=0.114  Sum_probs=64.3

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-C-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCCC------C
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-A-PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE------F  178 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~------~  178 (237)
                      .+.++|..| |+|+++.++++.+ . ...+|+.++.+++..+...+.+...+  ..+.+...|+.+.. +...      .
T Consensus         3 ~~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   79 (276)
T 1wma_A            3 GIHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKE   79 (276)
T ss_dssp             CCCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHh
Confidence            456788777 4566666665544 2 24689999999887776666665444  33778888886511 1000      0


Q ss_pred             CCCCCEEEEeCCCh------------------------hchHHHHHhcccCCCEEEEEeCC
Q 026506          179 SGLADSIFLDLPQP------------------------WLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       179 ~~~~D~v~~~~~~~------------------------~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      .+.+|++|.+....                        ..+++.+.+.++++|+++.++..
T Consensus        80 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~  140 (276)
T 1wma_A           80 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSI  140 (276)
T ss_dssp             HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCH
T ss_pred             cCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECCh
Confidence            13689988765311                        02345566677777888877654

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=92.87  E-value=0.72  Score=35.09  Aligned_cols=99  Identities=11%  Similarity=0.010  Sum_probs=59.6

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCCCCCCCCCEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLADSI  185 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~~D~v  185 (237)
                      ....+++.+|+|  ..+..+++.+...+.|+++|.+++.++.++     .+    +.+..+|..+.. +....-..+|.|
T Consensus         7 ~~~~~viI~G~G--~~G~~la~~L~~~g~v~vid~~~~~~~~~~-----~~----~~~i~gd~~~~~~l~~a~i~~ad~v   75 (234)
T 2aef_A            7 AKSRHVVICGWS--ESTLECLRELRGSEVFVLAEDENVRKKVLR-----SG----ANFVHGDPTRVSDLEKANVRGARAV   75 (234)
T ss_dssp             ---CEEEEESCC--HHHHHHHHHSTTSEEEEEESCGGGHHHHHH-----TT----CEEEESCTTCHHHHHHTTCTTCSEE
T ss_pred             CCCCEEEEECCC--hHHHHHHHHHHhCCeEEEEECCHHHHHHHh-----cC----CeEEEcCCCCHHHHHhcCcchhcEE
Confidence            345689999875  556666666533222889999988776554     22    667888886521 111111568999


Q ss_pred             EEeCCChh--chHHHHHhcccCCCEEEEEeCCH
Q 026506          186 FLDLPQPW--LAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       186 ~~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                      ++..++..  ..+....+.+.|+..++.-....
T Consensus        76 i~~~~~d~~n~~~~~~a~~~~~~~~iia~~~~~  108 (234)
T 2aef_A           76 IVDLESDSETIHCILGIRKIDESVRIIAEAERY  108 (234)
T ss_dssp             EECCSCHHHHHHHHHHHHHHCSSSEEEEECSSG
T ss_pred             EEcCCCcHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence            98777653  23344556677777777655443

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=92.84  E-value=0.31  Score=38.19  Aligned_cols=80  Identities=15%  Similarity=0.187  Sum_probs=48.8

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCC------------HHHHHHHHHHHHHcCCCCcEEEEEccccCCC-
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFH------------EQRAASAREDFERTGVSSFVTVGVRDIQGQG-  173 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~------------~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-  173 (237)
                      .+.++|..|++. +++.+++..+ ....+|+.+|.+            ++.++...+.+...+  ..+.+...|+.+.. 
T Consensus        12 ~gk~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~   88 (278)
T 3sx2_A           12 TGKVAFITGAAR-GQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG--SRIVARQADVRDRES   88 (278)
T ss_dssp             TTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT--CCEEEEECCTTCHHH
T ss_pred             CCCEEEEECCCC-hHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcC--CeEEEEeCCCCCHHH
Confidence            467888888654 4444444433 234789999976            666666655555444  34888899987511 


Q ss_pred             CCCC------CCCCCCEEEEeCC
Q 026506          174 FPDE------FSGLADSIFLDLP  190 (237)
Q Consensus       174 ~~~~------~~~~~D~v~~~~~  190 (237)
                      ....      ..++.|+++.+..
T Consensus        89 v~~~~~~~~~~~g~id~lv~nAg  111 (278)
T 3sx2_A           89 LSAALQAGLDELGRLDIVVANAG  111 (278)
T ss_dssp             HHHHHHHHHHHHCCCCEEEECCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCC
Confidence            1100      0147899987654

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=92.70  E-value=1.1  Score=35.99  Aligned_cols=107  Identities=12%  Similarity=0.095  Sum_probs=52.4

Q ss_pred             CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-GVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      +..+|..+|+|. |......+...+...++..+|++++.++--...+... .....+.+...|.  ..+     ...|+|
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~--~a~-----~~aDvV   78 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDY--SDV-----KDCDVI   78 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CG--GGG-----TTCSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCH--HHh-----CCCCEE
Confidence            346899999987 4433333333223348999999987665312212111 0112244443231  112     458999


Q ss_pred             EEeCCChh------------------chHHHHHhcccCCCEEEEEeCCHHHHHHH
Q 026506          186 FLDLPQPW------------------LAIPSAKKMLKQDGILCSFSPCIEQVQRS  222 (237)
Q Consensus       186 ~~~~~~~~------------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~  222 (237)
                      ++..+.+.                  +..+.+.+. .|++.+++++.....+...
T Consensus        79 ii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPv~~~~~~  132 (318)
T 1y6j_A           79 VVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVSNPVDIITYM  132 (318)
T ss_dssp             EECCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECSSSHHHHHHH
T ss_pred             EEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCcHHHHHHH
Confidence            98654331                  122233333 6999998765544444433

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=92.65  E-value=0.52  Score=37.15  Aligned_cols=101  Identities=14%  Similarity=0.154  Sum_probs=63.0

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC------CCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFS  179 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~------~~~  179 (237)
                      .|.++|.-|++.| ++..++..+ ....+|+.+|.+++.++.+.+.+   +  ........|+.+.. ...      ..-
T Consensus        28 ~gKvalVTGas~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~---g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~  101 (273)
T 4fgs_A           28 NAKIAVITGATSG-IGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI---G--GGAVGIQADSANLAELDRLYEKVKAEA  101 (273)
T ss_dssp             TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--TTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---C--CCeEEEEecCCCHHHHHHHHHHHHHHc
Confidence            5788888887665 444443332 23478999999998887665543   3  22566778876511 000      011


Q ss_pred             CCCCEEEEeCCCh------------------------hchHHHHHhcccCCCEEEEEeC
Q 026506          180 GLADSIFLDLPQP------------------------WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       180 ~~~D~v~~~~~~~------------------------~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ++.|+++.+....                        ....+.+.+.|+.+|.++.++.
T Consensus       102 G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS  160 (273)
T 4fgs_A          102 GRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGS  160 (273)
T ss_dssp             SCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEee
Confidence            5789988765311                        1356777888999999886653

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=92.60  E-value=3.4  Score=33.32  Aligned_cols=108  Identities=13%  Similarity=0.067  Sum_probs=57.3

Q ss_pred             CCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-GVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       107 ~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      ++..+|..+|+|. |......+...+-...+..+|++++.++....-+... .....+.+...+.  ..+     ...|+
T Consensus         7 ~~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~--~a~-----~~aDv   79 (326)
T 2zqz_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEY--SDA-----KDADL   79 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCG--GGG-----GGCSE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCH--HHh-----CCCCE
Confidence            4557999999988 4433333333233358999999988775422222211 0112244443322  122     45899


Q ss_pred             EEEeCCChh--------------chHHHHHh---cccCCCEEEEEeCCHHHHHH
Q 026506          185 IFLDLPQPW--------------LAIPSAKK---MLKQDGILCSFSPCIEQVQR  221 (237)
Q Consensus       185 v~~~~~~~~--------------~~l~~~~~---~L~~gG~l~~~~~~~~~~~~  221 (237)
                      |++..+.+.              ..+..+.+   ...|++.+++++.....+..
T Consensus        80 Vii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~  133 (326)
T 2zqz_A           80 VVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTY  133 (326)
T ss_dssp             EEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHH
T ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHH
Confidence            987654221              12222222   22699999987654444433

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=92.59  E-value=3.3  Score=33.17  Aligned_cols=102  Identities=15%  Similarity=0.133  Sum_probs=53.4

Q ss_pred             EEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506          111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER-TGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD  188 (237)
Q Consensus       111 ~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~  188 (237)
                      +|..+|+|. |......+...+....|+.+|.+++.++.....+.. ........+...|.  ..+     ...|+|++.
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~--~~~-----~~aDvViia   74 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDY--ADL-----KGSDVVIVA   74 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCG--GGG-----TTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCCH--HHh-----CCCCEEEEc
Confidence            688999988 443333233322224899999998877765433221 10001122222332  112     458999987


Q ss_pred             CCChh--------------chHHHHHhcc---cCCCEEEEEeCCHHHH
Q 026506          189 LPQPW--------------LAIPSAKKML---KQDGILCSFSPCIEQV  219 (237)
Q Consensus       189 ~~~~~--------------~~l~~~~~~L---~~gG~l~~~~~~~~~~  219 (237)
                      .+.+.              ..+..+.+.+   .|++.+++++......
T Consensus        75 v~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~  122 (319)
T 1a5z_A           75 AGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVL  122 (319)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcHHHH
Confidence            65322              1223333333   5889888765444443

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=92.56  E-value=0.78  Score=35.33  Aligned_cols=81  Identities=9%  Similarity=0.037  Sum_probs=48.9

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc--cCC-CCCC------C
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI--QGQ-GFPD------E  177 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~--~~~-~~~~------~  177 (237)
                      .+.++|..|++. +++..+++.+ ....+|+.++.+++.++.+.+.+...+... ..+...|+  .+. ....      .
T Consensus        11 ~~k~vlVTGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~   88 (252)
T 3f1l_A           11 NDRIILVTGASD-GIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQ-PQWFILDLLTCTSENCQQLAQRIAV   88 (252)
T ss_dssp             TTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCC-CEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCC-ceEEEEecccCCHHHHHHHHHHHHH
Confidence            567888888654 4444444433 234689999999988877766665443222 66777887  321 0000      0


Q ss_pred             CCCCCCEEEEeCC
Q 026506          178 FSGLADSIFLDLP  190 (237)
Q Consensus       178 ~~~~~D~v~~~~~  190 (237)
                      ..++.|+++.+..
T Consensus        89 ~~g~id~lv~nAg  101 (252)
T 3f1l_A           89 NYPRLDGVLHNAG  101 (252)
T ss_dssp             HCSCCSEEEECCC
T ss_pred             hCCCCCEEEECCc
Confidence            1147899987653

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=92.40  E-value=0.25  Score=41.27  Aligned_cols=92  Identities=16%  Similarity=0.178  Sum_probs=52.9

Q ss_pred             CCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHH-HHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRA-ASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       107 ~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      .+|.+|+.+|+|. |......+...+ ..+|+++|.+++.. +.+++    .|.    ...  +..+  +.... ..+|+
T Consensus       165 l~g~~VlIiGaG~iG~~~a~~l~~~G-~~~V~v~~r~~~ra~~la~~----~g~----~~~--~~~~--l~~~l-~~aDv  230 (404)
T 1gpj_A          165 LHDKTVLVVGAGEMGKTVAKSLVDRG-VRAVLVANRTYERAVELARD----LGG----EAV--RFDE--LVDHL-ARSDV  230 (404)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHC-CSEEEEECSSHHHHHHHHHH----HTC----EEC--CGGG--HHHHH-HTCSE
T ss_pred             ccCCEEEEEChHHHHHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHH----cCC----cee--cHHh--HHHHh-cCCCE
Confidence            5789999999988 776666666653 35899999998776 44433    342    111  1111  11100 35899


Q ss_pred             EEEeCCChhchH--HHHHh-cc--cCCCEEEEE
Q 026506          185 IFLDLPQPWLAI--PSAKK-ML--KQDGILCSF  212 (237)
Q Consensus       185 v~~~~~~~~~~l--~~~~~-~L--~~gG~l~~~  212 (237)
                      |+...+.+...+  +.+.. .|  +++|.++++
T Consensus       231 Vi~at~~~~~~~~~~~l~~~~lk~r~~~~~v~v  263 (404)
T 1gpj_A          231 VVSATAAPHPVIHVDDVREALRKRDRRSPILII  263 (404)
T ss_dssp             EEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEE
T ss_pred             EEEccCCCCceecHHHHHHHHHhccCCCCEEEE
Confidence            998766543222  22222 24  445555544

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=92.39  E-value=0.19  Score=39.02  Aligned_cols=104  Identities=15%  Similarity=0.161  Sum_probs=61.5

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEE-eCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCCC------C
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTF-DFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE------F  178 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~v-D~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~------~  178 (237)
                      .+.++|..|++.| ++.+++..+ ....+|+.+ +.+++..+.+.+.+...+  ..+.+...|+.+.. ....      .
T Consensus         7 ~~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (259)
T 3edm_A            7 TNRTIVVAGAGRD-IGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAADK   83 (259)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            4678898886654 444444332 123677777 666666666666555444  33777888887511 1100      0


Q ss_pred             CCCCCEEEEeCCCh-------------------------hchHHHHHhcccCCCEEEEEeC
Q 026506          179 SGLADSIFLDLPQP-------------------------WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       179 ~~~~D~v~~~~~~~-------------------------~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .++.|+++.+....                         ..+.+.+.+.|+++|+++.++.
T Consensus        84 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS  144 (259)
T 3edm_A           84 FGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSS  144 (259)
T ss_dssp             HCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             hCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence            14689988765311                         1245566777777888887764

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=92.37  E-value=0.33  Score=37.84  Aligned_cols=80  Identities=19%  Similarity=0.160  Sum_probs=50.3

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEEccccCCCC-CC------CC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFER-TGVSSFVTVGVRDIQGQGF-PD------EF  178 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~i~~~~~d~~~~~~-~~------~~  178 (237)
                      .+.++|..|++. +++.++++.+ ....+|+.++.+++.++.+.+.+.. .+  ..+.+...|+.+..- ..      ..
T Consensus        19 ~~k~vlVTGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   95 (266)
T 4egf_A           19 DGKRALITGATK-GIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFG--TDVHTVAIDLAEPDAPAELARRAAEA   95 (266)
T ss_dssp             TTCEEEETTTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            467888887654 4444444433 2246899999999888777666544 33  348888999875211 00      00


Q ss_pred             CCCCCEEEEeCC
Q 026506          179 SGLADSIFLDLP  190 (237)
Q Consensus       179 ~~~~D~v~~~~~  190 (237)
                      .++.|+++.+..
T Consensus        96 ~g~id~lv~nAg  107 (266)
T 4egf_A           96 FGGLDVLVNNAG  107 (266)
T ss_dssp             HTSCSEEEEECC
T ss_pred             cCCCCEEEECCC
Confidence            147899988653

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=92.36  E-value=0.38  Score=37.78  Aligned_cols=81  Identities=15%  Similarity=0.172  Sum_probs=49.3

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeC-------------CHHHHHHHHHHHHHcCCCCcEEEEEccccCC
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDF-------------HEQRAASAREDFERTGVSSFVTVGVRDIQGQ  172 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~-------------~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~  172 (237)
                      ..+.++|..|++. +++.++++.+ ....+|+.+|.             +++.++...+.+...+  ..+.+...|+.+.
T Consensus        13 l~gk~~lVTGas~-gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~   89 (280)
T 3pgx_A           13 LQGRVAFITGAAR-GQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQG--RKALTRVLDVRDD   89 (280)
T ss_dssp             TTTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT--CCEEEEECCTTCH
T ss_pred             cCCCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEEcCCCCH
Confidence            3567888888765 4444444332 23468999987             6777776666655444  3478888888751


Q ss_pred             C-CCCC------CCCCCCEEEEeCC
Q 026506          173 G-FPDE------FSGLADSIFLDLP  190 (237)
Q Consensus       173 ~-~~~~------~~~~~D~v~~~~~  190 (237)
                      . ....      ..++.|+++.+..
T Consensus        90 ~~v~~~~~~~~~~~g~id~lvnnAg  114 (280)
T 3pgx_A           90 AALRELVADGMEQFGRLDVVVANAG  114 (280)
T ss_dssp             HHHHHHHHHHHHHHCCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCC
Confidence            1 1000      0147899887653

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=92.36  E-value=0.68  Score=36.50  Aligned_cols=95  Identities=19%  Similarity=0.181  Sum_probs=58.0

Q ss_pred             CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc---------CCC--------CcEEEEEccccC
Q 026506          110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT---------GVS--------SFVTVGVRDIQG  171 (237)
Q Consensus       110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~---------~~~--------~~i~~~~~d~~~  171 (237)
                      .+|..+|+|. |......+...  ..+|+.+|.+++.++.+++.+...         ++.        .++.. ..|..+
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~~   81 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFH--GFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLAQ   81 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHHH
Confidence            5789999988 54433333332  368999999999988887653211         111        01221 222211


Q ss_pred             CCCCCCCCCCCCEEEEeCCCh----hchHHHHHhcccCCCEEEEEe
Q 026506          172 QGFPDEFSGLADSIFLDLPQP----WLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       172 ~~~~~~~~~~~D~v~~~~~~~----~~~l~~~~~~L~~gG~l~~~~  213 (237)
                       .+     ...|+|+...+..    ..+++++...++|+..++..+
T Consensus        82 -~~-----~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~t  121 (283)
T 4e12_A           82 -AV-----KDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNS  121 (283)
T ss_dssp             -HT-----TTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             -Hh-----ccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECC
Confidence             11     4589999988865    345777778888888776443

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=92.32  E-value=0.56  Score=36.27  Aligned_cols=80  Identities=16%  Similarity=0.296  Sum_probs=49.2

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC-------CC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD-------EF  178 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~-------~~  178 (237)
                      .+.++|..|++ |+++.+++..+ ....+|+.++.+++.++...+.+...+  ..+.+...|+.+.. ...       ..
T Consensus         8 ~~k~vlVTGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (260)
T 2ae2_A            8 EGCTALVTGGS-RGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHF   84 (260)
T ss_dssp             TTCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46788888864 45555554433 224689999999887776655554433  34778888886511 100       01


Q ss_pred             CCCCCEEEEeCC
Q 026506          179 SGLADSIFLDLP  190 (237)
Q Consensus       179 ~~~~D~v~~~~~  190 (237)
                      .+.+|+++.+..
T Consensus        85 ~g~id~lv~~Ag   96 (260)
T 2ae2_A           85 HGKLNILVNNAG   96 (260)
T ss_dssp             TTCCCEEEECCC
T ss_pred             CCCCCEEEECCC
Confidence            146899987653

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=92.31  E-value=0.57  Score=37.20  Aligned_cols=79  Identities=15%  Similarity=0.197  Sum_probs=48.2

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCC------------HHHHHHHHHHHHHcCCCCcEEEEEccccCCC-
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFH------------EQRAASAREDFERTGVSSFVTVGVRDIQGQG-  173 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~------------~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-  173 (237)
                      .+.++|..|++.| ++..++..+ ....+|+.+|.+            ++.++...+.+...+  ..+.+...|+.+.. 
T Consensus        27 ~gk~~lVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~  103 (299)
T 3t7c_A           27 EGKVAFITGAARG-QGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG--RRIIASQVDVRDFDA  103 (299)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHH
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcC--CceEEEECCCCCHHH
Confidence            4678898887654 444444332 234789999876            666666666555544  34888889987511 


Q ss_pred             CCCC------CCCCCCEEEEeC
Q 026506          174 FPDE------FSGLADSIFLDL  189 (237)
Q Consensus       174 ~~~~------~~~~~D~v~~~~  189 (237)
                      ....      ..++.|+++.+.
T Consensus       104 v~~~~~~~~~~~g~iD~lv~nA  125 (299)
T 3t7c_A          104 MQAAVDDGVTQLGRLDIVLANA  125 (299)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECC
T ss_pred             HHHHHHHHHHHhCCCCEEEECC
Confidence            1000      014689988764

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=92.31  E-value=0.33  Score=37.78  Aligned_cols=106  Identities=13%  Similarity=0.186  Sum_probs=62.9

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCC---HHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCCC-----
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFH---EQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE-----  177 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~---~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~-----  177 (237)
                      .+.++|..|++ ++++..++..+ ....+|+.++.+   .+.++...+.+...+  ..+.+...|+.+.. ....     
T Consensus        10 ~~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~   86 (262)
T 3ksu_A           10 KNKVIVIAGGI-KNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQG--AKVALYQSDLSNEEEVAKLFDFAE   86 (262)
T ss_dssp             TTCEEEEETCS-SHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTT--CEEEEEECCCCSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHH
Confidence            46788888865 45566666554 234678887654   345555555444333  34788888987511 1100     


Q ss_pred             -CCCCCCEEEEeCCCh------------------------hchHHHHHhcccCCCEEEEEeCCH
Q 026506          178 -FSGLADSIFLDLPQP------------------------WLAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       178 -~~~~~D~v~~~~~~~------------------------~~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                       ..++.|+++.+....                        ..+.+.+.+.|+++|.++.++...
T Consensus        87 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~  150 (262)
T 3ksu_A           87 KEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSL  150 (262)
T ss_dssp             HHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCH
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechh
Confidence             014689988765411                        124566677777889988776543

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=92.14  E-value=1.7  Score=36.89  Aligned_cols=94  Identities=12%  Similarity=0.086  Sum_probs=56.9

Q ss_pred             CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-------cC------C-CCcEEEEEccccCC
Q 026506          108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER-------TG------V-SSFVTVGVRDIQGQ  172 (237)
Q Consensus       108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-------~~------~-~~~i~~~~~d~~~~  172 (237)
                      +-.+|..||+|. |......+..  ....|+.+|.+++.++.+++.+..       .+      . .....+ ..|..  
T Consensus        36 ~~~kV~VIGaG~MG~~iA~~la~--~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~--  110 (463)
T 1zcj_A           36 PVSSVGVLGLGTMGRGIAISFAR--VGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTK--  110 (463)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHT--TTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGG--
T ss_pred             CCCEEEEECcCHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHH--
Confidence            345899999988 5433332322  236899999999988877664321       01      0 011222 33331  


Q ss_pred             CCCCCCCCCCCEEEEeCCChh----chHHHHHhcccCCCEEEE
Q 026506          173 GFPDEFSGLADSIFLDLPQPW----LAIPSAKKMLKQDGILCS  211 (237)
Q Consensus       173 ~~~~~~~~~~D~v~~~~~~~~----~~l~~~~~~L~~gG~l~~  211 (237)
                      .+     ...|+||+..+...    .+++++...++++.+++.
T Consensus       111 ~~-----~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~s  148 (463)
T 1zcj_A          111 EL-----STVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCT  148 (463)
T ss_dssp             GG-----TTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             HH-----CCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEe
Confidence            11     45899999888653    456677777888877663

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=92.06  E-value=0.34  Score=37.97  Aligned_cols=80  Identities=11%  Similarity=0.084  Sum_probs=49.4

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCCC------CC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE------FS  179 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~------~~  179 (237)
                      .+.++|..|++ |+++..++..+ ....+|+.++.+++..+...+.+...+.  .+.+...|+.+.. ....      ..
T Consensus        27 ~~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~  103 (270)
T 3ftp_A           27 DKQVAIVTGAS-RGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGL--EGRGAVLNVNDATAVDALVESTLKEF  103 (270)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence            46788887755 44444444433 2346899999999888877776665553  2667778876511 1000      01


Q ss_pred             CCCCEEEEeCC
Q 026506          180 GLADSIFLDLP  190 (237)
Q Consensus       180 ~~~D~v~~~~~  190 (237)
                      ++.|+++.+..
T Consensus       104 g~iD~lvnnAg  114 (270)
T 3ftp_A          104 GALNVLVNNAG  114 (270)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            46899887653

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=91.92  E-value=0.31  Score=38.26  Aligned_cols=80  Identities=14%  Similarity=0.196  Sum_probs=50.1

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC-C-----CCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-E-----FSG  180 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~-----~~~  180 (237)
                      .+.++|..|++ |+++..++..+ ....+|+.++.+++..+.+.+.+...+  ..+.+...|+.+...-. .     ..+
T Consensus        32 ~gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~g  108 (275)
T 4imr_A           32 RGRTALVTGSS-RGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASG--GTAQELAGDLSEAGAGTDLIERAEAIA  108 (275)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTT--CCEEEEECCTTSTTHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            46788888765 44444444433 234689999998887777766665544  34888888987521100 0     014


Q ss_pred             CCCEEEEeCC
Q 026506          181 LADSIFLDLP  190 (237)
Q Consensus       181 ~~D~v~~~~~  190 (237)
                      +.|+++.+..
T Consensus       109 ~iD~lvnnAg  118 (275)
T 4imr_A          109 PVDILVINAS  118 (275)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899987654

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=91.81  E-value=0.84  Score=36.13  Aligned_cols=105  Identities=14%  Similarity=0.116  Sum_probs=63.9

Q ss_pred             CCCCEEEEEccCcc-HHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC------C
Q 026506          107 VPGCLVLESGTGSG-SLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------E  177 (237)
Q Consensus       107 ~~~~~vldiG~G~G-~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~------~  177 (237)
                      -.+.++|..|+++| +++..+++.+ ....+|+.++.++...+.+++.....+  . +.+...|+.+.. ...      .
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~-~~~~~~Dv~d~~~v~~~~~~~~~  105 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELG--A-FVAGHCDVADAASIDAVFETLEK  105 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHT--C-EEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--C-ceEEECCCCCHHHHHHHHHHHHH
Confidence            45789999997643 3444444332 124689999998766665555444443  3 778888887511 100      0


Q ss_pred             CCCCCCEEEEeCCCh----------------------------hchHHHHHhcccCCCEEEEEeC
Q 026506          178 FSGLADSIFLDLPQP----------------------------WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       178 ~~~~~D~v~~~~~~~----------------------------~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ..++.|++|.+....                            ..+++.+.+.|+++|+++.++.
T Consensus       106 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS  170 (293)
T 3grk_A          106 KWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY  170 (293)
T ss_dssp             HTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             hcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence            114789998765311                            1245566777788999887764

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=91.60  E-value=0.56  Score=36.71  Aligned_cols=80  Identities=15%  Similarity=0.155  Sum_probs=47.9

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeC-------------CHHHHHHHHHHHHHcCCCCcEEEEEccccCCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDF-------------HEQRAASAREDFERTGVSSFVTVGVRDIQGQG  173 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~-------------~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~  173 (237)
                      .+.++|..|++.| ++.+++..+ ....+|+.+|.             +++.++...+.+...+  ..+.+...|+.+..
T Consensus        10 ~~k~~lVTGas~G-IG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~   86 (277)
T 3tsc_A           10 EGRVAFITGAARG-QGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN--RRIVAAVVDTRDFD   86 (277)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHH
T ss_pred             CCCEEEEECCccH-HHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCCHH
Confidence            4678888886654 444444332 23468999987             5666666655555444  34888888887511


Q ss_pred             -CCCC------CCCCCCEEEEeCC
Q 026506          174 -FPDE------FSGLADSIFLDLP  190 (237)
Q Consensus       174 -~~~~------~~~~~D~v~~~~~  190 (237)
                       ....      ..++.|+++.+..
T Consensus        87 ~v~~~~~~~~~~~g~id~lvnnAg  110 (277)
T 3tsc_A           87 RLRKVVDDGVAALGRLDIIVANAG  110 (277)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCC
Confidence             1000      0146899887653

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=91.58  E-value=0.78  Score=36.34  Aligned_cols=104  Identities=17%  Similarity=0.089  Sum_probs=62.8

Q ss_pred             CCCEEEEEccCc-cHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCCC------C
Q 026506          108 PGCLVLESGTGS-GSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE------F  178 (237)
Q Consensus       108 ~~~~vldiG~G~-G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~------~  178 (237)
                      .+.++|..|+++ .+++..+++.+ ....+|+.++.++...+.+.+.....+  . +.+...|+.+.. ....      .
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~-~~~~~~Dv~d~~~v~~~~~~~~~~  105 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLG--V-KLTVPCDVSDAESVDNMFKVLAEE  105 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHT--C-CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC--C-eEEEEcCCCCHHHHHHHHHHHHHH
Confidence            478999999764 34444444332 124689999998766665555544444  2 467788886511 1100      0


Q ss_pred             CCCCCEEEEeCCCh----------------------------hchHHHHHhcccCCCEEEEEeC
Q 026506          179 SGLADSIFLDLPQP----------------------------WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       179 ~~~~D~v~~~~~~~----------------------------~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .++.|+++.+....                            ..+++.+.+.|+.+|.++.++.
T Consensus       106 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS  169 (296)
T 3k31_A          106 WGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSY  169 (296)
T ss_dssp             HSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred             cCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence            14689998765311                            1245566777888999887764

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=91.57  E-value=1  Score=35.31  Aligned_cols=80  Identities=14%  Similarity=0.105  Sum_probs=48.8

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeC-CHHHHHHHHHHHHHcCCCCcEEEEEccccCCCC-CCC------C
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDF-HEQRAASAREDFERTGVSSFVTVGVRDIQGQGF-PDE------F  178 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~-~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~------~  178 (237)
                      .+.++|..|++. +++.++++.+ ....+|+.++. +++.++...+.+...+  ..+.+...|+.+... ...      .
T Consensus        28 ~~k~~lVTGas~-GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  104 (280)
T 4da9_A           28 ARPVAIVTGGRR-GIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLG--ARVIFLRADLADLSSHQATVDAVVAE  104 (280)
T ss_dssp             CCCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTT--CCEEEEECCTTSGGGHHHHHHHHHHH
T ss_pred             CCCEEEEecCCC-HHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            467888888655 4444444332 23468988885 6777766666655544  348888899875211 100      0


Q ss_pred             CCCCCEEEEeCC
Q 026506          179 SGLADSIFLDLP  190 (237)
Q Consensus       179 ~~~~D~v~~~~~  190 (237)
                      .++.|+++.+..
T Consensus       105 ~g~iD~lvnnAg  116 (280)
T 4da9_A          105 FGRIDCLVNNAG  116 (280)
T ss_dssp             HSCCCEEEEECC
T ss_pred             cCCCCEEEECCC
Confidence            147899987764

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=91.57  E-value=0.47  Score=38.44  Aligned_cols=106  Identities=12%  Similarity=0.146  Sum_probs=58.1

Q ss_pred             CCEEEEEccCc-cHHHHHHHH-HhCCCcEE-EEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          109 GCLVLESGTGS-GSLTTSLAR-AVAPTGHV-YTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       109 ~~~vldiG~G~-G~~~~~~~~-~~~~~~~v-~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..+|..+|+|. |......+. .. +..++ .++|.+++..+.+.+   ..+...    ...|..+ -+..   ..+|+|
T Consensus         8 ~~~v~iiG~G~ig~~~~~~l~~~~-~~~~~vav~d~~~~~~~~~a~---~~g~~~----~~~~~~~-~l~~---~~~D~V   75 (346)
T 3cea_A            8 PLRAAIIGLGRLGERHARHLVNKI-QGVKLVAACALDSNQLEWAKN---ELGVET----TYTNYKD-MIDT---ENIDAI   75 (346)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTC-SSEEEEEEECSCHHHHHHHHH---TTCCSE----EESCHHH-HHTT---SCCSEE
T ss_pred             cceEEEEcCCHHHHHHHHHHHhcC-CCcEEEEEecCCHHHHHHHHH---HhCCCc----ccCCHHH-HhcC---CCCCEE
Confidence            45899999997 544333333 22 34554 467999887655433   234321    2233332 1221   368999


Q ss_pred             EEeCCChhchHHHHHhcccCCCEEEEEeCC---HHHHHHHHHHHH
Q 026506          186 FLDLPQPWLAIPSAKKMLKQDGILCSFSPC---IEQVQRSCESLR  227 (237)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~---~~~~~~~~~~l~  227 (237)
                      ++..|... ..+.+..+|+.|-.+++-.|.   ..+.+++.+..+
T Consensus        76 ~i~tp~~~-h~~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~  119 (346)
T 3cea_A           76 FIVAPTPF-HPEMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIK  119 (346)
T ss_dssp             EECSCGGG-HHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHH
T ss_pred             EEeCChHh-HHHHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHH
Confidence            98877543 456666777776545543333   344444544443

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=91.48  E-value=0.64  Score=37.29  Aligned_cols=80  Identities=11%  Similarity=0.150  Sum_probs=47.5

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCC------------HHHHHHHHHHHHHcCCCCcEEEEEccccCCC-
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFH------------EQRAASAREDFERTGVSSFVTVGVRDIQGQG-  173 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~------------~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-  173 (237)
                      .+.++|..|++. +++..++..+ ....+|+++|.+            ++.++...+.+...+  ..+.+...|+.+.. 
T Consensus        45 ~gk~~lVTGas~-GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~  121 (317)
T 3oec_A           45 QGKVAFITGAAR-GQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQG--RRIIARQADVRDLAS  121 (317)
T ss_dssp             TTCEEEESSCSS-HHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHH
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHH
Confidence            467888888655 4444444333 234689999876            566665555555444  34888888986511 


Q ss_pred             CCC------CCCCCCCEEEEeCC
Q 026506          174 FPD------EFSGLADSIFLDLP  190 (237)
Q Consensus       174 ~~~------~~~~~~D~v~~~~~  190 (237)
                      ...      ...+++|++|.+..
T Consensus       122 v~~~~~~~~~~~g~iD~lVnnAg  144 (317)
T 3oec_A          122 LQAVVDEALAEFGHIDILVSNVG  144 (317)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCC
Confidence            100      00147899887653

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=91.43  E-value=3.8  Score=31.84  Aligned_cols=86  Identities=16%  Similarity=0.118  Sum_probs=52.3

Q ss_pred             EEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeC
Q 026506          111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDL  189 (237)
Q Consensus       111 ~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~  189 (237)
                      +|..+|+|. |......+...  ..+|+++|.+++..+.+.+    .+...  . ...|..+  .     ...|+|++..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~----~g~~~--~-~~~~~~~--~-----~~~D~vi~av   65 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVE----RQLVD--E-AGQDLSL--L-----QTAKIIFLCT   65 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTSCS--E-EESCGGG--G-----TTCSEEEECS
T ss_pred             EEEEEcCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHh----CCCCc--c-ccCCHHH--h-----CCCCEEEEEC
Confidence            688899887 54333333332  2489999999988776643    34322  1 1223221  1     3589999988


Q ss_pred             CCh--hchHHHHHhcccCCCEEEEE
Q 026506          190 PQP--WLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       190 ~~~--~~~l~~~~~~L~~gG~l~~~  212 (237)
                      +..  .++++.+...++++..++-.
T Consensus        66 ~~~~~~~~~~~l~~~~~~~~~vv~~   90 (279)
T 2f1k_A           66 PIQLILPTLEKLIPHLSPTAIVTDV   90 (279)
T ss_dssp             CHHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred             CHHHHHHHHHHHHhhCCCCCEEEEC
Confidence            754  24566677778887766543

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=91.38  E-value=0.62  Score=35.53  Aligned_cols=86  Identities=13%  Similarity=0.038  Sum_probs=46.1

Q ss_pred             CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCC--HHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFH--EQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      .+.+||.+|+|. |......+...  .+.|+.++.+  ++..+.+.     .+  . +.+...++....+     ..+|+
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~--GA~VtVvap~~~~~l~~l~~-----~~--~-i~~i~~~~~~~dL-----~~adL   94 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQE--GAAITVVAPTVSAEINEWEA-----KG--Q-LRVKRKKVGEEDL-----LNVFF   94 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGG--CCCEEEECSSCCHHHHHHHH-----TT--S-CEEECSCCCGGGS-----SSCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEECCCCCHHHHHHHH-----cC--C-cEEEECCCCHhHh-----CCCCE
Confidence            478999999987 43333333332  3567777653  33222222     12  2 5666555543222     45999


Q ss_pred             EEEeCCChhchHHHHHhcccCCCEEE
Q 026506          185 IFLDLPQPWLAIPSAKKMLKQDGILC  210 (237)
Q Consensus       185 v~~~~~~~~~~l~~~~~~L~~gG~l~  210 (237)
                      ||....++. .-..+....+ -|+++
T Consensus        95 VIaAT~d~~-~N~~I~~~ak-~gi~V  118 (223)
T 3dfz_A           95 IVVATNDQA-VNKFVKQHIK-NDQLV  118 (223)
T ss_dssp             EEECCCCTH-HHHHHHHHSC-TTCEE
T ss_pred             EEECCCCHH-HHHHHHHHHh-CCCEE
Confidence            998766553 3333443334 45554

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=91.37  E-value=0.3  Score=38.17  Aligned_cols=105  Identities=13%  Similarity=0.132  Sum_probs=60.7

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEE-eCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCCC------C
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTF-DFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE------F  178 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~v-D~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~------~  178 (237)
                      .+.++|..|++.| ++.+++..+ ....+|+.. ..+++..+...+.+...+  ..+.+...|+.+.. ....      .
T Consensus        26 ~~k~~lVTGas~G-IG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~  102 (267)
T 3u5t_A           26 TNKVAIVTGASRG-IGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAG--GKALTAQADVSDPAAVRRLFATAEEA  102 (267)
T ss_dssp             -CCEEEEESCSSH-HHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            4678898887654 333333322 113567766 445566666655555444  34778888887511 1100      0


Q ss_pred             CCCCCEEEEeCCCh------------------------hchHHHHHhcccCCCEEEEEeCC
Q 026506          179 SGLADSIFLDLPQP------------------------WLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       179 ~~~~D~v~~~~~~~------------------------~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      .++.|+++.+....                        ..+++.+.+.|+++|+++.++..
T Consensus       103 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~  163 (267)
T 3u5t_A          103 FGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTS  163 (267)
T ss_dssp             HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCT
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeCh
Confidence            14689988765311                        12456677778888999877654

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=91.37  E-value=0.8  Score=35.04  Aligned_cols=79  Identities=15%  Similarity=0.164  Sum_probs=48.2

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC--CCCCC
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD--EFSGL  181 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~--~~~~~  181 (237)
                      ..++.+||..|++. +++.++++.+ ....+|+.++.+++.++...+.+   .  ..+.+...|+.+.. ...  ...++
T Consensus        11 ~~~~k~vlVTGas~-gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~   84 (249)
T 3f9i_A           11 DLTGKTSLITGASS-GIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL---K--DNYTIEVCNLANKEECSNLISKTSN   84 (249)
T ss_dssp             CCTTCEEEETTTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--SSEEEEECCTTSHHHHHHHHHTCSC
T ss_pred             cCCCCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh---c--cCccEEEcCCCCHHHHHHHHHhcCC
Confidence            34678889888654 4444444433 22468999999988777665543   2  33778888876511 000  01146


Q ss_pred             CCEEEEeCC
Q 026506          182 ADSIFLDLP  190 (237)
Q Consensus       182 ~D~v~~~~~  190 (237)
                      .|+++.+..
T Consensus        85 id~li~~Ag   93 (249)
T 3f9i_A           85 LDILVCNAG   93 (249)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            899887653

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=91.36  E-value=0.63  Score=35.90  Aligned_cols=79  Identities=15%  Similarity=0.172  Sum_probs=48.0

Q ss_pred             CCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCCC------CCC
Q 026506          109 GCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE------FSG  180 (237)
Q Consensus       109 ~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~------~~~  180 (237)
                      +.++|..|++ |+++..+++.+ ....+|+.++.+++..+...+.+...+  ..+.+...|+.+.. +...      ..+
T Consensus         2 ~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g   78 (256)
T 1geg_A            2 KKVALVTGAG-QGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLG   78 (256)
T ss_dssp             CCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            3578888754 45555554443 123689999999887776665554444  33778888887511 1000      014


Q ss_pred             CCCEEEEeCC
Q 026506          181 LADSIFLDLP  190 (237)
Q Consensus       181 ~~D~v~~~~~  190 (237)
                      ++|+++.+..
T Consensus        79 ~id~lv~nAg   88 (256)
T 1geg_A           79 GFDVIVNNAG   88 (256)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899987653

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=91.35  E-value=0.92  Score=35.95  Aligned_cols=94  Identities=13%  Similarity=0.115  Sum_probs=53.8

Q ss_pred             CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE--------ccccC-CCCCCCCC
Q 026506          110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV--------RDIQG-QGFPDEFS  179 (237)
Q Consensus       110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~--------~d~~~-~~~~~~~~  179 (237)
                      .+|..+|+|. |......+...  ..+|+.+|.+++.++..++.    +    +....        .++.. ..... .-
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~r~~~~~~~~~~~----g----~~~~~~~~~~~~~~~~~~~~~~~~-~~   72 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQG--GNDVTLIDQWPAHIEAIRKN----G----LIADFNGEEVVANLPIFSPEEIDH-QN   72 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHH----C----EEEEETTEEEEECCCEECGGGCCT-TS
T ss_pred             CeEEEECcCHHHHHHHHHHHhC--CCcEEEEECCHHHHHHHHhC----C----EEEEeCCCeeEecceeecchhhcc-cC
Confidence            4799999987 54433333332  35899999999887766553    3    11111        00000 00110 00


Q ss_pred             CCCCEEEEeCCChh--chHHHHHhcccCCCEEEEEeC
Q 026506          180 GLADSIFLDLPQPW--LAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       180 ~~~D~v~~~~~~~~--~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ..+|+|++..+...  ++++.+...++++..++....
T Consensus        73 ~~~d~vi~~v~~~~~~~v~~~l~~~l~~~~~iv~~~~  109 (316)
T 2ew2_A           73 EQVDLIIALTKAQQLDAMFKAIQPMITEKTYVLCLLN  109 (316)
T ss_dssp             CCCSEEEECSCHHHHHHHHHHHGGGCCTTCEEEECCS
T ss_pred             CCCCEEEEEeccccHHHHHHHHHHhcCCCCEEEEecC
Confidence            26899999887442  456666777778777665543

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=91.35  E-value=0.22  Score=39.76  Aligned_cols=61  Identities=20%  Similarity=0.342  Sum_probs=41.3

Q ss_pred             CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCH------------------HHHHHHHHHHHHcCCCCcEEEEEcc
Q 026506          108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHE------------------QRAASAREDFERTGVSSFVTVGVRD  168 (237)
Q Consensus       108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~------------------~~~~~a~~~~~~~~~~~~i~~~~~d  168 (237)
                      ...+|+.+|+|. |......+...+ -++++.+|.+.                  ...+.+++++...+-.-.++....+
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aG-VG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~~  113 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCG-IGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYN  113 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECCC
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcC-CCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEeccc
Confidence            457999999997 766555555543 47899998765                  5677777777765543335555544


Q ss_pred             c
Q 026506          169 I  169 (237)
Q Consensus       169 ~  169 (237)
                      +
T Consensus       114 l  114 (292)
T 3h8v_A          114 I  114 (292)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=91.34  E-value=4.1  Score=31.54  Aligned_cols=66  Identities=14%  Similarity=0.053  Sum_probs=46.8

Q ss_pred             CEEEEEccCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506          110 CLVLESGTGSGSLTTSLARAVA-PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD  188 (237)
Q Consensus       110 ~~vldiG~G~G~~~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~  188 (237)
                      .+||..|+  |.++.++++.+. ...+|++++.++...+....        ..+++..+|+.+..  .   .++|+||+.
T Consensus         6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--------~~~~~~~~D~~d~~--~---~~~d~vi~~   70 (286)
T 3ius_A            6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA--------SGAEPLLWPGEEPS--L---DGVTHLLIS   70 (286)
T ss_dssp             CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH--------TTEEEEESSSSCCC--C---TTCCEEEEC
T ss_pred             CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh--------CCCeEEEecccccc--c---CCCCEEEEC
Confidence            58999994  888887777652 23689999998865544332        22888999987622  2   679999876


Q ss_pred             CC
Q 026506          189 LP  190 (237)
Q Consensus       189 ~~  190 (237)
                      ..
T Consensus        71 a~   72 (286)
T 3ius_A           71 TA   72 (286)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=91.29  E-value=1.8  Score=34.76  Aligned_cols=104  Identities=13%  Similarity=0.133  Sum_probs=58.8

Q ss_pred             CEEEEEccCc-cHHHHHHHHHhCCC-cEEEEEeCCHH---HHHHHHHHHHHcCCCCcEEEEEc-cccCCCCCCCCCCCCC
Q 026506          110 CLVLESGTGS-GSLTTSLARAVAPT-GHVYTFDFHEQ---RAASAREDFERTGVSSFVTVGVR-DIQGQGFPDEFSGLAD  183 (237)
Q Consensus       110 ~~vldiG~G~-G~~~~~~~~~~~~~-~~v~~vD~~~~---~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~~~~D  183 (237)
                      .+|..||+|. |......+..  .. .+|+++|.+++   ..+...+.+...|.       .. +..+ ..     ...|
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~--~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-------~~~s~~e-~~-----~~aD   89 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGG--RNAARLAAYDLRFNDPAASGALRARAAELGV-------EPLDDVA-GI-----ACAD   89 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT--TTCSEEEEECGGGGCTTTHHHHHHHHHHTTC-------EEESSGG-GG-----GGCS
T ss_pred             CeEEEECccHHHHHHHHHHHH--cCCCeEEEEeCCCccccchHHHHHHHHHCCC-------CCCCHHH-HH-----hcCC
Confidence            5899999876 4333222222  23 58999999872   12122222222342       22 2221 11     3479


Q ss_pred             EEEEeCCChh--chHHHHHhcccCCCEEEEEeCC-HHHHHHHHHHHHh
Q 026506          184 SIFLDLPQPW--LAIPSAKKMLKQDGILCSFSPC-IEQVQRSCESLRL  228 (237)
Q Consensus       184 ~v~~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~-~~~~~~~~~~l~~  228 (237)
                      +|++..+.+.  +.++.+...+++|..++-.+.. ....+++.+.+++
T Consensus        90 vVi~avp~~~~~~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~  137 (317)
T 4ezb_A           90 VVLSLVVGAATKAVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIAT  137 (317)
T ss_dssp             EEEECCCGGGHHHHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHT
T ss_pred             EEEEecCCHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHH
Confidence            9999887653  3467777788888777655533 3445666666665

>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}

Probab=91.28  E-value=0.2  Score=38.99  Aligned_cols=64  Identities=19%  Similarity=0.290  Sum_probs=43.3

Q ss_pred             CCCCCCCCCCCCEEEEeCCChh----------------chHHHHHhcccCCCEEEEEe--CCHHHHHHHHHHHHhcCccc
Q 026506          172 QGFPDEFSGLADSIFLDLPQPW----------------LAIPSAKKMLKQDGILCSFS--PCIEQVQRSCESLRLNFTGK  233 (237)
Q Consensus       172 ~~~~~~~~~~~D~v~~~~~~~~----------------~~l~~~~~~L~~gG~l~~~~--~~~~~~~~~~~~l~~~f~~v  233 (237)
                      ..+|... +.||+||+++..+.                -+-..+.+.|+|||.+++..  --....+.+...+..-|..+
T Consensus       203 lG~P~~~-grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aYGyADR~SE~vV~alARkF~~~  281 (324)
T 3trk_A          203 LGLPATL-GRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGYADRTSERVICVLGRKFRSS  281 (324)
T ss_dssp             GCCCGGG-CCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTTEEEE
T ss_pred             cCCCCcC-CceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEeecccccchHHHHHHHHhhheee
Confidence            4455422 78999999987442                13456788999999988654  22345677777777767766


Q ss_pred             ccc
Q 026506          234 ESC  236 (237)
Q Consensus       234 ~~~  236 (237)
                      ++|
T Consensus       282 rv~  284 (324)
T 3trk_A          282 RAL  284 (324)
T ss_dssp             EEE
T ss_pred             eee
Confidence            654

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=91.25  E-value=0.25  Score=38.38  Aligned_cols=79  Identities=15%  Similarity=0.133  Sum_probs=47.7

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeC-CHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCCCC------
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDF-HEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEF------  178 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~-~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~------  178 (237)
                      .+.++|..|+ +|+++.++++.+ ....+|++++. +++..+...+.+...+  ..+.+...|+.+.. +....      
T Consensus        20 ~~k~vlItGa-sggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   96 (274)
T 1ja9_A           20 AGKVALTTGA-GRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVSH   96 (274)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            4678888875 456665555543 12368888888 7777666655555444  33778888887511 11000      


Q ss_pred             CCCCCEEEEeC
Q 026506          179 SGLADSIFLDL  189 (237)
Q Consensus       179 ~~~~D~v~~~~  189 (237)
                      .+.+|+++.+.
T Consensus        97 ~~~~d~vi~~A  107 (274)
T 1ja9_A           97 FGGLDFVMSNS  107 (274)
T ss_dssp             HSCEEEEECCC
T ss_pred             cCCCCEEEECC
Confidence            03689988754

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=91.14  E-value=1.4  Score=37.32  Aligned_cols=110  Identities=15%  Similarity=0.176  Sum_probs=60.3

Q ss_pred             CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc---CC---------CCcEEEEEccccCCCCCC
Q 026506          110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT---GV---------SSFVTVGVRDIQGQGFPD  176 (237)
Q Consensus       110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~---~~---------~~~i~~~~~d~~~~~~~~  176 (237)
                      .+|..+|+|. |......+...  ..+|+++|.+++.++..++.....   +.         ..++.+. .|..+ ..  
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~--G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t-~d~~e-a~--   76 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAEL--GANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFG-TEIEQ-AV--   76 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEE-SCHHH-HG--
T ss_pred             CEEEEECcCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEE-CCHHH-HH--
Confidence            5788999887 44333333332  368999999999888776521000   00         1113321 22211 11  


Q ss_pred             CCCCCCCEEEEeCCChh------------chHHHHHhcccCCCEEEEEeCC-HHHHHHHHHHHHh
Q 026506          177 EFSGLADSIFLDLPQPW------------LAIPSAKKMLKQDGILCSFSPC-IEQVQRSCESLRL  228 (237)
Q Consensus       177 ~~~~~~D~v~~~~~~~~------------~~l~~~~~~L~~gG~l~~~~~~-~~~~~~~~~~l~~  228 (237)
                         ...|+||+..|.+.            ++++.+.+.|++|-.++..+.. ....+++.+.+++
T Consensus        77 ---~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~  138 (450)
T 3gg2_A           77 ---PEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQE  138 (450)
T ss_dssp             ---GGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             ---hcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHH
Confidence               34799998876552            3456667777777666544422 2344555555544

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=91.13  E-value=1.4  Score=35.85  Aligned_cols=106  Identities=16%  Similarity=0.049  Sum_probs=61.3

Q ss_pred             CCEEEEEccCc-cH-HHHHHHHHhCCCcEEE-EEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          109 GCLVLESGTGS-GS-LTTSLARAVAPTGHVY-TFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       109 ~~~vldiG~G~-G~-~~~~~~~~~~~~~~v~-~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..+|..||||. |. .....+... +..+++ ++|.+++..+...+.   .++.    .. .|..+ -+..   ..+|+|
T Consensus        27 ~~rigiIG~G~~g~~~~~~~l~~~-~~~~l~av~d~~~~~~~~~a~~---~g~~----~~-~~~~~-ll~~---~~~D~V   93 (350)
T 3rc1_A           27 PIRVGVIGCADIAWRRALPALEAE-PLTEVTAIASRRWDRAKRFTER---FGGE----PV-EGYPA-LLER---DDVDAV   93 (350)
T ss_dssp             CEEEEEESCCHHHHHTHHHHHHHC-TTEEEEEEEESSHHHHHHHHHH---HCSE----EE-ESHHH-HHTC---TTCSEE
T ss_pred             ceEEEEEcCcHHHHHHHHHHHHhC-CCeEEEEEEcCCHHHHHHHHHH---cCCC----Cc-CCHHH-HhcC---CCCCEE
Confidence            35899999987 54 222333333 345665 569988766554443   4532    22 44432 1222   468999


Q ss_pred             EEeCCChhchHHHHHhcccCCCEEEEEeC---CHHHHHHHHHHHHh
Q 026506          186 FLDLPQPWLAIPSAKKMLKQDGILCSFSP---CIEQVQRSCESLRL  228 (237)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~---~~~~~~~~~~~l~~  228 (237)
                      ++..|... -.+.+..+|+.|--+++--|   ..++.+++.+..++
T Consensus        94 ~i~tp~~~-h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~  138 (350)
T 3rc1_A           94 YVPLPAVL-HAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARE  138 (350)
T ss_dssp             EECCCGGG-HHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred             EECCCcHH-HHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence            98877554 45566667776666665444   44556666666555

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=90.98  E-value=0.74  Score=36.12  Aligned_cols=104  Identities=15%  Similarity=0.136  Sum_probs=59.4

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHH-HHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC------CC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQ-RAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EF  178 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~------~~  178 (237)
                      .+.++|..|++ |+++.++++.+ ....+|+.++.++. ..+.+.+.+...+  ..+.+...|+.+.. ...      ..
T Consensus        28 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~  104 (283)
T 1g0o_A           28 EGKVALVTGAG-RGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKI  104 (283)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            46788887765 45555555443 22468888888754 3444444444434  33777888876411 100      00


Q ss_pred             CCCCCEEEEeCCCh------------------------hchHHHHHhcccCCCEEEEEeC
Q 026506          179 SGLADSIFLDLPQP------------------------WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       179 ~~~~D~v~~~~~~~------------------------~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .+.+|+++.+....                        ..+++.+.+.|+.+|+++.++.
T Consensus       105 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  164 (283)
T 1g0o_A          105 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS  164 (283)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEec
Confidence            14689988765311                        1134566777777888887753

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=90.93  E-value=3.3  Score=33.07  Aligned_cols=104  Identities=13%  Similarity=0.141  Sum_probs=54.1

Q ss_pred             CCCCEEEEEccCc-cH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          107 VPGCLVLESGTGS-GS-LTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       107 ~~~~~vldiG~G~-G~-~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      ++..+|..+|+|. |. .+..++.. +....+..+|++++....+.+... .... ++... .|..  .+     ...|+
T Consensus        12 ~~~~kV~ViGaG~vG~~~a~~l~~~-g~~~ev~L~Di~~~~~g~a~dl~~-~~~~-~i~~t-~d~~--~l-----~~aD~   80 (303)
T 2i6t_A           12 KTVNKITVVGGGELGIACTLAISAK-GIADRLVLLDLSEGTKGATMDLEI-FNLP-NVEIS-KDLS--AS-----AHSKV   80 (303)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECCC-----CHHHHHH-HTCT-TEEEE-SCGG--GG-----TTCSE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhc-CCCCEEEEEcCCcchHHHHHHHhh-hcCC-CeEEe-CCHH--HH-----CCCCE
Confidence            3457899999997 43 33333333 333589999999864434444332 2222 35542 4432  12     45899


Q ss_pred             EEEeCCCh-----------------hchHHHHHhcccCCCEEEEEeCCHHHHHHH
Q 026506          185 IFLDLPQP-----------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRS  222 (237)
Q Consensus       185 v~~~~~~~-----------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~  222 (237)
                      |++....+                 .+.++.+.+. .|++.+++++.....+...
T Consensus        81 Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~sNP~~~~t~~  134 (303)
T 2i6t_A           81 VIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHY-SQHSVLLVASQPVEIMTYV  134 (303)
T ss_dssp             EEECCCC----CCHHHHHHHHHHHHHHHHHHHHHH-TTTCEEEECSSSHHHHHHH
T ss_pred             EEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEcCChHHHHHHH
Confidence            98865211                 1233444444 4999988766545444333

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=90.83  E-value=1.1  Score=36.10  Aligned_cols=104  Identities=13%  Similarity=0.110  Sum_probs=60.2

Q ss_pred             CEEEEEccCc-cHHHHHHHHHhCCCcEEE-EEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506          110 CLVLESGTGS-GSLTTSLARAVAPTGHVY-TFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL  187 (237)
Q Consensus       110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~-~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~  187 (237)
                      .+|..+|||. |......+... +..+++ ++|.+++..+...+.   .+    +.  ..|..+ -+..   ..+|+|++
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~-~~~~l~av~d~~~~~~~~~~~~---~~----~~--~~~~~~-~l~~---~~~D~V~i   69 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGN-ADARLVAVADAFPAAAEAIAGA---YG----CE--VRTIDA-IEAA---ADIDAVVI   69 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHC-TTEEEEEEECSSHHHHHHHHHH---TT----CE--ECCHHH-HHHC---TTCCEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHhhC-CCcEEEEEECCCHHHHHHHHHH---hC----CC--cCCHHH-HhcC---CCCCEEEE
Confidence            4788999987 54333333332 445666 579998876654443   34    22  234332 1221   46899998


Q ss_pred             eCCChhchHHHHHhcccCCCEEEEEeC---CHHHHHHHHHHHHh
Q 026506          188 DLPQPWLAIPSAKKMLKQDGILCSFSP---CIEQVQRSCESLRL  228 (237)
Q Consensus       188 ~~~~~~~~l~~~~~~L~~gG~l~~~~~---~~~~~~~~~~~l~~  228 (237)
                      ..|... -.+.+...|+.|--+++--|   ...+.+++.+..++
T Consensus        70 ~tp~~~-h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~  112 (331)
T 4hkt_A           70 CTPTDT-HADLIERFARAGKAIFCEKPIDLDAERVRACLKVVSD  112 (331)
T ss_dssp             CSCGGG-HHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred             eCCchh-HHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHH
Confidence            877654 45666667777655554333   34556666666555

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=90.83  E-value=0.85  Score=38.97  Aligned_cols=90  Identities=16%  Similarity=0.156  Sum_probs=57.7

Q ss_pred             CCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       107 ~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      -.|.+|..+|.|. |......+..+  ..+|+++|.++.....+..    .+.    .+  .++. ..+     ...|+|
T Consensus       255 l~GktVgIIG~G~IG~~vA~~l~~~--G~~Viv~d~~~~~~~~a~~----~g~----~~--~~l~-ell-----~~aDiV  316 (479)
T 1v8b_A          255 ISGKIVVICGYGDVGKGCASSMKGL--GARVYITEIDPICAIQAVM----EGF----NV--VTLD-EIV-----DKGDFF  316 (479)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHH--TCEEEEECSCHHHHHHHHT----TTC----EE--CCHH-HHT-----TTCSEE
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhC--cCEEEEEeCChhhHHHHHH----cCC----Ee--cCHH-HHH-----hcCCEE
Confidence            4688999999988 66666666666  3689999999875433321    232    22  2222 112     458999


Q ss_pred             EEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          186 FLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +.......-+-+...+.||||++++-.+.
T Consensus       317 i~~~~t~~lI~~~~l~~MK~gailiNvgr  345 (479)
T 1v8b_A          317 ITCTGNVDVIKLEHLLKMKNNAVVGNIGH  345 (479)
T ss_dssp             EECCSSSSSBCHHHHTTCCTTCEEEECSS
T ss_pred             EECCChhhhcCHHHHhhcCCCcEEEEeCC
Confidence            88754333233567788999998885554

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=90.82  E-value=0.94  Score=35.50  Aligned_cols=99  Identities=18%  Similarity=0.078  Sum_probs=58.3

Q ss_pred             EEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeC
Q 026506          111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDL  189 (237)
Q Consensus       111 ~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~  189 (237)
                      +|..+|+|. |......+..   ..+|+++|.+++..+.+.+.    +..    ..  +.. ...     ..+|+|++..
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~---g~~V~~~~~~~~~~~~~~~~----g~~----~~--~~~-~~~-----~~~D~vi~~v   63 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR---RFPTLVWNRTFEKALRHQEE----FGS----EA--VPL-ERV-----AEARVIFTCL   63 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT---TSCEEEECSSTHHHHHHHHH----HCC----EE--CCG-GGG-----GGCSEEEECC
T ss_pred             eEEEEcccHHHHHHHHHHhC---CCeEEEEeCCHHHHHHHHHC----CCc----cc--CHH-HHH-----hCCCEEEEeC
Confidence            578899988 5443332222   24689999998877766543    321    11  111 111     3589999988


Q ss_pred             CChh---chHHHHHhcccCCCEEEEEeCC-HHHHHHHHHHHHh
Q 026506          190 PQPW---LAIPSAKKMLKQDGILCSFSPC-IEQVQRSCESLRL  228 (237)
Q Consensus       190 ~~~~---~~l~~~~~~L~~gG~l~~~~~~-~~~~~~~~~~l~~  228 (237)
                      +.+.   ..++.+.+.+++|..++..+.. ....+++.+.+.+
T Consensus        64 ~~~~~~~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~  106 (289)
T 2cvz_A           64 PTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLRE  106 (289)
T ss_dssp             SSHHHHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHT
T ss_pred             CChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHH
Confidence            8654   3455566777777766644433 2344556666654

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=90.73  E-value=5.3  Score=31.71  Aligned_cols=101  Identities=10%  Similarity=-0.011  Sum_probs=53.6

Q ss_pred             CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH----HcCCCCcEEEE-EccccCCCCCCCCCCCCC
Q 026506          110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE----RTGVSSFVTVG-VRDIQGQGFPDEFSGLAD  183 (237)
Q Consensus       110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~----~~~~~~~i~~~-~~d~~~~~~~~~~~~~~D  183 (237)
                      ++|..+|+|. |......+...+...++..+|++++.++--...+.    .....  ..+. ..| . ..+     ...|
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~--~~i~~t~d-~-~a~-----~~aD   71 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKY--PKIVGGAD-Y-SLL-----KGSE   71 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCC--CEEEEESC-G-GGG-----TTCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCC--CEEEEeCC-H-HHh-----CCCC
Confidence            3688899987 54433333332333489999999987652111111    12222  2333 234 2 222     4589


Q ss_pred             EEEEeCCChh------------------chHHHHHhcccCCCEEEEEeCCHHHHH
Q 026506          184 SIFLDLPQPW------------------LAIPSAKKMLKQDGILCSFSPCIEQVQ  220 (237)
Q Consensus       184 ~v~~~~~~~~------------------~~l~~~~~~L~~gG~l~~~~~~~~~~~  220 (237)
                      +|++..+.+.                  +..+.+.+ ..|++.+++++...+.+.
T Consensus        72 iVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~-~~p~a~iivvsNPvd~~t  125 (294)
T 1oju_A           72 IIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVE-NAPESKILVVTNPMDVMT  125 (294)
T ss_dssp             EEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHT-TSTTCEEEECSSSHHHHH
T ss_pred             EEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHh-hCCCeEEEEeCCcchHHH
Confidence            9987543221                  12223333 379999988875555443

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=90.69  E-value=1.7  Score=35.56  Aligned_cols=101  Identities=13%  Similarity=0.062  Sum_probs=57.5

Q ss_pred             hcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-ccccCCCCCCCCCC
Q 026506          103 YLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV-RDIQGQGFPDEFSG  180 (237)
Q Consensus       103 ~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~~  180 (237)
                      .+......++..||+|. |......+....+..+++.+|.+++..+...+.+...  .. +.+.. .+.. ...     .
T Consensus       123 ~la~~~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~--~g-~~~~~~~~~~-eav-----~  193 (350)
T 1x7d_A          123 ALARPNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEY--SG-LTIRRASSVA-EAV-----K  193 (350)
T ss_dssp             HHSCTTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTC--TT-CEEEECSSHH-HHH-----T
T ss_pred             HhccccCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc--cC-ceEEEeCCHH-HHH-----h
Confidence            34445567999999998 5543332222234578999999998887776654321  01 22222 2221 111     3


Q ss_pred             CCCEEEEeCCCh--hchHHHHHhcccCCCEEEEEeC
Q 026506          181 LADSIFLDLPQP--WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       181 ~~D~v~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ..|+|+...+..  ...+.  ...|+||-.+...+.
T Consensus       194 ~aDiVi~aTps~~~~pvl~--~~~l~~G~~V~~vgs  227 (350)
T 1x7d_A          194 GVDIITTVTADKAYATIIT--PDMLEPGMHLNAVGG  227 (350)
T ss_dssp             TCSEEEECCCCSSEEEEEC--GGGCCTTCEEEECSC
T ss_pred             cCCEEEEeccCCCCCceec--HHHcCCCCEEEECCC
Confidence            479998877654  12222  256778776665543

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=90.69  E-value=0.96  Score=38.69  Aligned_cols=111  Identities=14%  Similarity=0.200  Sum_probs=60.3

Q ss_pred             CCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH---cCC---------CCcEEEEEccccCCC
Q 026506          107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER---TGV---------SSFVTVGVRDIQGQG  173 (237)
Q Consensus       107 ~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~---~~~---------~~~i~~~~~d~~~~~  173 (237)
                      ....+|..+|+|. |......+...  ..+|+++|.+++.++..++....   .++         ..++.+ ..|..+ .
T Consensus         6 ~~~~~I~VIG~G~vG~~lA~~la~~--G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~-ttd~~~-a   81 (478)
T 2y0c_A            6 HGSMNLTIIGSGSVGLVTGACLADI--GHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRF-STDIEA-A   81 (478)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ECCHHH-H
T ss_pred             CCCceEEEECcCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEE-ECCHHH-H
Confidence            3467999999997 55443333332  35899999999988877653100   000         011222 112110 0


Q ss_pred             CCCCCCCCCCEEEEeCCCh---------h---chHHHHHhcccCCCEEEEEeCC-HHHHHHHHHHH
Q 026506          174 FPDEFSGLADSIFLDLPQP---------W---LAIPSAKKMLKQDGILCSFSPC-IEQVQRSCESL  226 (237)
Q Consensus       174 ~~~~~~~~~D~v~~~~~~~---------~---~~l~~~~~~L~~gG~l~~~~~~-~~~~~~~~~~l  226 (237)
                      .     ...|+||+..|.|         .   ++++.+.+.|++|..++..+.. ....+++.+.+
T Consensus        82 ~-----~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l  142 (478)
T 2y0c_A           82 V-----AHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKSTVPVGTAERVRAAV  142 (478)
T ss_dssp             H-----HHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHH
T ss_pred             h-----hcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCCcCCCchHHHHHHH
Confidence            1     3479999987764         1   3456666778887666543321 23344444433

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=90.65  E-value=0.91  Score=35.61  Aligned_cols=77  Identities=19%  Similarity=0.272  Sum_probs=46.2

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC------CCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFS  179 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~------~~~  179 (237)
                      .+.++|..|++.| ++.+++..+ ....+|+.++.+++.++.+.+.+   +  ..+.+...|+.+.. ...      ...
T Consensus        28 ~gk~vlVTGas~g-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~  101 (277)
T 3gvc_A           28 AGKVAIVTGAGAG-IGLAVARRLADEGCHVLCADIDGDAADAAATKI---G--CGAAACRVDVSDEQQIIAMVDACVAAF  101 (277)
T ss_dssp             TTCEEEETTTTST-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---C--SSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---C--CcceEEEecCCCHHHHHHHHHHHHHHc
Confidence            4678888886654 343443332 23468999999988777665543   3  33677888886511 000      001


Q ss_pred             CCCCEEEEeCC
Q 026506          180 GLADSIFLDLP  190 (237)
Q Consensus       180 ~~~D~v~~~~~  190 (237)
                      ++.|+++.+..
T Consensus       102 g~iD~lvnnAg  112 (277)
T 3gvc_A          102 GGVDKLVANAG  112 (277)
T ss_dssp             SSCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            46899887653

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=90.62  E-value=5.5  Score=31.74  Aligned_cols=104  Identities=13%  Similarity=0.101  Sum_probs=53.8

Q ss_pred             EEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH----cCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER----TGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       111 ~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~----~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      +|..+|+|. |......+...+...+|+.+|++++.++.....+..    .....++.. ..|.. . +     ...|+|
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t~d~~-~-l-----~~aDvV   73 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG-SNDYA-D-T-----ANSDIV   73 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEE-ESCGG-G-G-----TTCSEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEE-CCCHH-H-H-----CCCCEE
Confidence            688999988 443333333311246899999998877643221111    111111221 13432 1 2     458999


Q ss_pred             EEeCCChh--------------chHHHHHhcc---cCCCEEEEEeCCHHHHHHH
Q 026506          186 FLDLPQPW--------------LAIPSAKKML---KQDGILCSFSPCIEQVQRS  222 (237)
Q Consensus       186 ~~~~~~~~--------------~~l~~~~~~L---~~gG~l~~~~~~~~~~~~~  222 (237)
                      ++..+.+.              ..+..+.+.+   .|++.+++++.........
T Consensus        74 iiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~~~~~~~  127 (310)
T 1guz_A           74 IITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHV  127 (310)
T ss_dssp             EECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHHHHH
T ss_pred             EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchHHHHHH
Confidence            98764321              1222332222   5899988776545444333

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=90.61  E-value=5.6  Score=31.84  Aligned_cols=104  Identities=15%  Similarity=0.102  Sum_probs=54.3

Q ss_pred             CCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHH-HHHHHHHcC-CCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAAS-AREDFERTG-VSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       109 ~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~-a~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..+|..+|+|. |......+...+....+..+|++++.++. +........ ....+.+...+.  ..+     ...|+|
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~--~a~-----~~aDvV   78 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEY--SDC-----HDADLV   78 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCG--GGG-----TTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCH--HHh-----CCCCEE
Confidence            46899999988 43332222222333589999999876653 222111111 111244443221  122     458999


Q ss_pred             EEeCCChh--------------chH----HHHHhcccCCCEEEEEeCCHHHHH
Q 026506          186 FLDLPQPW--------------LAI----PSAKKMLKQDGILCSFSPCIEQVQ  220 (237)
Q Consensus       186 ~~~~~~~~--------------~~l----~~~~~~L~~gG~l~~~~~~~~~~~  220 (237)
                      ++..+.+.              ..+    +.+.+. .|++.+++++.....+.
T Consensus        79 vi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPv~~~t  130 (317)
T 3d0o_A           79 VICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVATNPVDILA  130 (317)
T ss_dssp             EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHHHHH
T ss_pred             EECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCcHHHHH
Confidence            87654221              122    222333 79999998664444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	237
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	5e-67
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	2e-65
d1o54a_	266	c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo	3e-57
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	3e-47
d1g8aa_	227	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro	9e-20
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	7e-13
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	2e-10
d1i1na_	224	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	2e-08
d1g8sa_	230	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth	7e-08
d1r18a_	223	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	3e-06
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	2e-05
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	4e-05
d2frna1	260	c.66.1.47 (A:19-278) Hypothetical protein PH0793 {	6e-05
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	4e-04
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	5e-04
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	0.001
d2cl5a1	214	c.66.1.1 (A:3-216) Catechol O-methyltransferase, C	0.002
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	0.003

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  205 bits (524), Expect = 5e-67
 Identities = 56/216 (25%), Positives = 94/216 (43%), Gaps = 5/216 (2%)

Query: 16  IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLA 75
              G+ V + +       + +   + F    G+  H   IG   GS+V S+ G    +L 
Sbjct: 4   FSIGERVQLTDAKGRRYTMSLTPGAEFHTHRGSIAHDAVIGLEQGSVVKSSNGALFLVLR 63

Query: 76  PTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGH 135
           P    + + +    Q++Y  D + ++   ++ PG  VLE+G GSG+LT SL RAV P G 
Sbjct: 64  PLLVDYVMSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQ 123

Query: 136 VYTFDFHEQRAASAREDFERT--GVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPW 193
           V +++     A  AR +             + V D+     PD      D   LD+  PW
Sbjct: 124 VISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGS---VDRAVLDMLAPW 180

Query: 194 LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLN 229
             + +  ++L   G+L  +   + Q+ R  E+LR  
Sbjct: 181 EVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAK 216

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  203 bits (517), Expect = 2e-65
 Identities = 53/232 (22%), Positives = 100/232 (43%), Gaps = 14/232 (6%)

Query: 14  RCIKEGDLVIVYE---RHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGF 70
           R  + G+L++           K  ++       + +GA      +GK  G ++ S+ G  
Sbjct: 1   RPFQAGELILAETGEGETKFKKLFRLNNFGLLNSNWGAVPFGKIVGKFPGQILRSSFGKQ 60

Query: 71  VYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAV 130
             L  P  E + +++   T I +  DI+ ++  +++ PG  VLE+G+GSG ++  L++AV
Sbjct: 61  YMLRRPALEDYVVLMKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAV 120

Query: 131 APTGHVYTFDFHEQRAASAREDFERTGVS----------SFVTVGVRDIQGQGFPDEFSG 180
              G V +F+  +     A+++++    S            V    +DI G    D  S 
Sbjct: 121 GSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISG-ATEDIKSL 179

Query: 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTG 232
             D++ LD+  P + +P     LK  G+   +   I QV    + +R     
Sbjct: 180 TFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELA 231

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

 Score =  181 bits (459), Expect = 3e-57
 Identities = 62/221 (28%), Positives = 107/221 (48%), Gaps = 5/221 (2%)

Query: 12  FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV 71
               +K GD V++    +    V + ++       G    ++   K  G ++ ++ G   
Sbjct: 7   VADTLKPGDRVLLSFEDESEFLVDLEKDKKLHTHLGIIDLNEVFEKGPGEIIRTSAGKKG 66

Query: 72  YLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVA 131
           Y+L P+     + +  RTQI+Y  D SF+ M L++  G  ++++G GSG++   LARAV 
Sbjct: 67  YILIPSLIDEIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVG 126

Query: 132 PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQ 191
            +G V+ ++  E+ A  A  +  + G+   VT+ VRDI       +     D++FLD+P 
Sbjct: 127 SSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDV----DALFLDVPD 182

Query: 192 PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLR-LNFT 231
           PW  I    + LK  G   +  P   QVQ + + L+ L F 
Sbjct: 183 PWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI 223

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score =  154 bits (391), Expect = 3e-47
 Identities = 38/183 (20%), Positives = 68/183 (37%), Gaps = 4/183 (2%)

Query: 47  GAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLEL 106
           G   H                G    +   +P  +  V+   TQI+   D S++IM   L
Sbjct: 24  GKMHHLGISRVIEPGDELIVSGKSFIVSDFSPMYFGRVIRRNTQIISEIDASYIIMRCGL 83

Query: 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV 166
            PG  +LE G GSG++++ +  A+   G +   +  E     A ++         V    
Sbjct: 84  RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSR 143

Query: 167 RDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226
            DI        +      +  D+P PW  +     M+K   +   + P  +Q +++  SL
Sbjct: 144 SDIADFISDQMYDA----VIADIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSL 199

Query: 227 RLN 229
             +
Sbjct: 200 SAS 202

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 82.5 bits (203), Expect = 9e-20
 Identities = 26/141 (18%), Positives = 45/141 (31%), Gaps = 8/141 (5%)

Query: 95  ADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE 154
           A I   +    + PG  VL  G  SG+  + ++  V   G ++  +F  +         E
Sbjct: 60  AAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVE 119

Query: 155 RTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDG--ILCSF 212
                  +       +          +         Q  + I +A+  LK+ G  ++   
Sbjct: 120 ERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVK 179

Query: 213 SPCI------EQVQRSCESLR 227
           S  I      EQV R  E   
Sbjct: 180 SRSIDVTKEPEQVFREVEREL 200

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 63.2 bits (153), Expect = 7e-13
 Identities = 26/145 (17%), Positives = 47/145 (32%), Gaps = 15/145 (10%)

Query: 94  IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDF 153
           +A +      L+L     VL  G  SG+  + LA  V   G +Y  ++  +      E  
Sbjct: 42  LAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELV 100

Query: 154 ERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPW---LAIPSAKKMLKQDG--I 208
                   +                    D I+ D+ Q     +   +A+  LK+ G  +
Sbjct: 101 RERNNIIPLLFDASKPW---KYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVV 157

Query: 209 LCSFSPCI------EQVQRSCESLR 227
           +   +  I      E+V +S     
Sbjct: 158 IMVKARSIDSTAEPEEVFKSVLKEM 182

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 56.0 bits (134), Expect = 2e-10
 Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 4/128 (3%)

Query: 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS 159
           ++   E     + ++ G G+G +T            VY  D + +  ++   + +R G+ 
Sbjct: 25  IMCLAEPGKNDVAVDVGCGTGGVTL---ELAGRVRRVYAIDRNPEAISTTEMNLQRHGLG 81

Query: 160 SFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQV 219
             VT+   D            +A           + +   K  LK  G +   +  +E  
Sbjct: 82  DNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEI-LRIIKDKLKPGGRIIVTAILLETK 140

Query: 220 QRSCESLR 227
             + E LR
Sbjct: 141 FEAMECLR 148

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 2e-08
 Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 2/130 (1%)

Query: 83  LVLSHRTQILYIADISFVIMY--LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFD 140
             +  +  I      ++ +     +L  G   L+ G+GSG LT   AR V  TG V   D
Sbjct: 49  QSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGID 108

Query: 141 FHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAK 200
             ++    +  +  +   +   +  V+ + G G                    +   +  
Sbjct: 109 HIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALI 168

Query: 201 KMLKQDGILC 210
             LK  G L 
Sbjct: 169 DQLKPGGRLI 178

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 49.3 bits (117), Expect = 7e-08
 Identities = 16/109 (14%), Positives = 32/109 (29%), Gaps = 1/109 (0%)

Query: 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163
           + +     +L  G  +G+  + +A      G VY  ++  +      +          + 
Sbjct: 70  MPIKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAERENIIPIL 128

Query: 164 VGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF 212
                 Q      E   +         Q  + I +AK  LK+ G     
Sbjct: 129 GDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA 177

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 223

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.5 bits (104), Expect = 3e-06
 Identities = 20/122 (16%), Positives = 37/122 (30%), Gaps = 17/122 (13%)

Query: 99  FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTG-----HVYTFDFHEQRAASAREDF 153
              +   L PG  +L+ G+GSG LT    R +   G      +   +   +    ++ + 
Sbjct: 71  LEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANL 130

Query: 154 ERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL------DLPQPWLAIPSAKKMLKQDG 207
                S   +  +  ++G G          +         D P   +        L   G
Sbjct: 131 NTDDRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELI------NQLASGG 184

Query: 208 IL 209
            L
Sbjct: 185 RL 186

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.2 bits (98), Expect = 2e-05
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 8/119 (6%)

Query: 98  SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
           + +I   +L    +VL+ G G+G L+   A+  A   HV   D        A+E  E  G
Sbjct: 28  NAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMSSIIEM-AKELVELNG 84

Query: 158 VSSFVTVGVRDIQGQGFPDE-----FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCS 211
            S  +T+    ++    P        S       L        + +    L + G++  
Sbjct: 85  FSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 41.1 bits (95), Expect = 4e-05
 Identities = 25/130 (19%), Positives = 40/130 (30%), Gaps = 5/130 (3%)

Query: 97  ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAR--EDFE 154
            + +   L + PG  +L+ G+GSG +  + AR    TG            A  R  E   
Sbjct: 22  YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV 81

Query: 155 RTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214
              V          +  +         A  I          +    + LK  GI+    P
Sbjct: 82  SERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAGAEELL---AQSLKPGGIMLIGEP 138

Query: 215 CIEQVQRSCE 224
              Q+  + E
Sbjct: 139 YWRQLPATEE 148

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 40.9 bits (95), Expect = 6e-05
 Identities = 31/206 (15%), Positives = 61/206 (29%), Gaps = 33/206 (16%)

Query: 19  GDLVIV-----YERH---------DCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVF 64
           GD++++      E +         + +    V +            +    G    ++  
Sbjct: 16  GDVLLLPLRPELEPYKHRIAEVYAEVLGVKTVLRKGHIHGETRKPDYELLYGSDTVTVHV 75

Query: 65  SNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTT 124
            N  G  Y L     +++       + + +A +          P  LV++   G G L  
Sbjct: 76  EN--GIKYKLDVAKIMFSPAN--VKERVRMAKV--------AKPDELVVDMFAGIGHL-- 121

Query: 125 SLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184
           SL  AV     V   +          E+     V   ++                 +AD 
Sbjct: 122 SLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSA----YNMDNRDFPGENIADR 177

Query: 185 IFL-DLPQPWLAIPSAKKMLKQDGIL 209
           I +  + +    IP A  + K   I+
Sbjct: 178 ILMGYVVRTHEFIPKALSIAKDGAII 203

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 38.3 bits (88), Expect = 4e-04
 Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 6/130 (4%)

Query: 89  TQILYIAD--ISFVI-MYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQR 145
           T+ LY  D  +SF++    ++     +++ G G G L   L   +         D  E  
Sbjct: 5   TRDLYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGET- 63

Query: 146 AASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG-LADSIFLDLPQPWLAIPSAKKMLK 204
              A        +         D       D++   +  +  L +  P   +      +K
Sbjct: 64  -LLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVK 122

Query: 205 QDGILCSFSP 214
           + G +  F P
Sbjct: 123 KGGKIICFEP 132

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 5e-04
 Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 8/118 (6%)

Query: 98  SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
            F+     +    +VL+ G G+G L+   A+A A    V   D  E     A +      
Sbjct: 25  DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEI-LYQAMDIIRLNK 81

Query: 158 VSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPS-----AKKMLKQDGILC 210
           +   +T+    I+    P E   +  S ++     + ++         K L + G + 
Sbjct: 82  LEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 139

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 17/135 (12%), Positives = 39/135 (28%), Gaps = 13/135 (9%)

Query: 98  SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
           ++++  L       VL+   G+G  +  L         V   D   + A   R +  +  
Sbjct: 46  AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEP 105

Query: 158 VSSFVTVGVRDIQGQGFPDEFSGLADSIFL-------------DLPQPWLAIPSAKKMLK 204
                 +   +              D++               D  +  LA+ +   M++
Sbjct: 106 AFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVR 165

Query: 205 QDGILCSFSPCIEQV 219
             G+L       + +
Sbjct: 166 PGGLLVIDHRNYDYI 180

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 214

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG 171
           VLE G   G     +AR + P   + T + +   AA  ++     G+   VT+     Q 
Sbjct: 60  VLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQD 119

Query: 172 QGFPDEFSGLADSIFL-------DLPQPWLAIPSAKKMLKQDGILCS 211
                +     D++ +       D   P   +     +L++  +L +
Sbjct: 120 LIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLA 166

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 24/130 (18%), Positives = 35/130 (26%), Gaps = 9/130 (6%)

Query: 97  ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT 156
           I   ++ L    G  VL+ G G G       RA    G  Y  D  E     AR      
Sbjct: 13  IKACLIRLYTKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNM 70

Query: 157 GVSSFVTVGVRDIQGQGFPDEFS-------GLADSIFLDLPQPWLAIPSAKKMLKQDGIL 209
                V    +D  G+                    F       +A  +  + L+  G  
Sbjct: 71  KRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYF 130

Query: 210 CSFSPCIEQV 219
               P  + +
Sbjct: 131 IMTVPSRDVI 140

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	237
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	100.0
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	100.0
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	100.0
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.98
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.81
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.78
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.78
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.77
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.76
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.74
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.74
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.73
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.71
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.69
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.69
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.68
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.67
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.67
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.67
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.65
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.65
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.64
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.64
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.63
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.62
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.61
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.61
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.61
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.6
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.6
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.59
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.58
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.57
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.56
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.55
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.55
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.55
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.53
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.53
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.52
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.52
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.52
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.49
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.47
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.46
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.46
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.46
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.44
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	99.44
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.43
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.42
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	99.42
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.41
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.41
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.4
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.39
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.39
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.39
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.39
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.38
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.38
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.37
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.36
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.36
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.33
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.31
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.31
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.31
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	99.27
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.24
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.23
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	99.19
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.18
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.18
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	99.17
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	99.17
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	99.16
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.15
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	99.13
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	99.12
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	99.05
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.02
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.0
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.99
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.98
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	98.96
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.94
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	98.94
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.93
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.92
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	98.92
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.85
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	98.83
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.83
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	98.83
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.82
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.82
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	98.79
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	98.77
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	98.77
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	98.74
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	98.71
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.71
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.69
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.69
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.68
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	98.68
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	98.64
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.59
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	98.59
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	98.59
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.5
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	98.47
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	98.47
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.41
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	98.39
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	98.39
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	98.34
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	98.31
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	98.3
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	98.28
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.26
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	98.17
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	97.96
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.9
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	97.84
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	97.82
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	97.6
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.55
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.3
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.26
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	97.23
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.11
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	96.96
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.89
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.88
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.87
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.61
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.59
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	96.51
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.49
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	96.2
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	96.18
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.09
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.95
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.73
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	95.62
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	95.44
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	95.35
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.3
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	95.13
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.12
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	95.08
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	94.99
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	94.8
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	94.59
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	94.47
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	94.28
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	94.12
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.03
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	94.02
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	93.88
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	93.83
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	92.9
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	92.81
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	92.74
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	92.67
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	92.52
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	92.45
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	92.32
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	92.32
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	92.31
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.19
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	91.94
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	91.85
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	91.82
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	91.56
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	91.52
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	91.48
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	91.44
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	91.34
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	91.31
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	91.29
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	91.09
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	91.01
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	90.93
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	90.88
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	90.8
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	90.79
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	90.65
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	90.57
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	90.46
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	90.23
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	89.88
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	89.72
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	89.71
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	89.68
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	89.57
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	89.29
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	88.96
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	88.85
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	88.79
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	88.64
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	88.53
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	88.34
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	88.22
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	88.17
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	88.17
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	88.14
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	88.11
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	87.53
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	87.4
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	87.36
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	87.29
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	87.23
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	87.05
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	86.87
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	86.81
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	86.73
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	86.53
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	86.51
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	86.42
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	86.18
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	86.12
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	85.93
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	85.58
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	85.49
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	85.3
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	85.18
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	84.98
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	84.5
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	84.45
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	84.18
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	84.1
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	83.99
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	83.97
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	83.96
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	83.96
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	83.61
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	82.96
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	82.87
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	82.62
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	82.28
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	81.79
d1qkka_	140	Transcriptional regulatory protein DctD, receiver	81.69
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	80.92
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	80.66
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	80.63
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	80.19

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=8.6e-42  Score=269.28  Aligned_cols=220  Identities=27%  Similarity=0.453  Sum_probs=205.6

Q ss_pred             CCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEEEEECCCHHHHhhhcCCccccc
Q 026506           13 TRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQIL   92 (237)
Q Consensus        13 ~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (237)
                      +++||+||+|++...+++++.+.+..|..++++.|.+++++++|+++|+.+.+..|..+++..|++++|...+++..+++
T Consensus         1 ~g~f~~Gd~Vll~~~~~~~~~~~l~~g~~~~t~~G~~~h~~iiGk~~G~~v~t~~g~~~~v~~pt~~~~~~~~~r~tqii   80 (264)
T d1i9ga_           1 TGPFSIGERVQLTDAKGRRYTMSLTPGAEFHTHRGSIAHDAVIGLEQGSVVKSSNGALFLVLRPLLVDYVMSMPRGPQVI   80 (264)
T ss_dssp             CCSCCTTCEEEEEETTCCEEEEECCTTCEEEETTEEEEHHHHTTCCTTEEEECSSCCEEEEECCCHHHHHTTSCSCSCCC
T ss_pred             CCCCCCCCEEEEEECCCCEEEEEECCCCEEEcCCeeEeHHHhcCCCCCeEEEeCCCCEEEEeCCCHHHHHhhccCCcccc
Confidence            47899999999999999999999999999999999999999999999999999999888899999999999999999999


Q ss_pred             ccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--CCCCcEEEEEcccc
Q 026506           93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT--GVSSFVTVGVRDIQ  170 (237)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~~~~i~~~~~d~~  170 (237)
                      +|.+++.++..++++||++|||+|||+|.++..+++.+++.++|+++|+++++++.|+++++..  +...++.+..+|+.
T Consensus        81 ypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~  160 (264)
T d1i9ga_          81 YPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLA  160 (264)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGG
T ss_pred             chHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccc
Confidence            9999999999999999999999999999999999999999999999999999999999998864  33345999999998


Q ss_pred             CCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh--cCccccc
Q 026506          171 GQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL--NFTGKES  235 (237)
Q Consensus       171 ~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~--~f~~v~~  235 (237)
                      +..+++   +.||.||+|.|+||++++.+.+.|||||++++++|+.+|+.+..+.+++  +|.++++
T Consensus       161 ~~~~~~---~~fDaV~ldlp~P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~~i~~  224 (264)
T d1i9ga_         161 DSELPD---GSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPRA  224 (264)
T ss_dssp             GCCCCT---TCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCCCEE
T ss_pred             cccccC---CCcceEEEecCCHHHHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCeecceE
Confidence            766665   7899999999999999999999999999999999999999999999985  5887654

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.2e-39  Score=258.48  Aligned_cols=220  Identities=29%  Similarity=0.482  Sum_probs=205.3

Q ss_pred             cCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEEEEECCCHHHHhhhcCCcccc
Q 026506           12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQI   91 (237)
Q Consensus        12 ~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (237)
                      ....+++||+|++...++++..+.+..|..++++.|.+++++++|+++|+.+.+..|..++++.|++++|...+++..++
T Consensus         7 ~~~~~~~gd~v~l~~~~~~~~~~~l~~~~~~~t~~G~~~~~~iig~~~G~~v~~~~g~~~~~~~p~~~d~~~~~~r~~qi   86 (266)
T d1o54a_           7 VADTLKPGDRVLLSFEDESEFLVDLEKDKKLHTHLGIIDLNEVFEKGPGEIIRTSAGKKGYILIPSLIDEIMNMKRRTQI   86 (266)
T ss_dssp             GGGCCCTTCEEEEEETTSCEEEEECCTTCEEEETTEEEEHHHHTTSCTTCEEECTTCCEEEEECCCHHHHHHTCCC-CCC
T ss_pred             ccCcCCCCCEEEEEeCCCCEEEEEECCCCEEECCCeEEeHHHhcCCCCCeEEEecCCCeEEEECCCHHHHHhhccCCccc
Confidence            45689999999999999999999999999999999999999999999999999999988899999999999999999999


Q ss_pred             cccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC
Q 026506           92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG  171 (237)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~  171 (237)
                      ++|.+++.++.+++++||++|||+|||+|.++..+++.+++.++|+++|+++++++.|+++++..++.+.+.+...|+. 
T Consensus        87 iypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~-  165 (266)
T d1o54a_          87 VYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS-  165 (266)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGG-
T ss_pred             cchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccc-
Confidence            9999999999999999999999999999999999999988889999999999999999999999998777999989876 


Q ss_pred             CCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCccccc
Q 026506          172 QGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGKES  235 (237)
Q Consensus       172 ~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~~  235 (237)
                      ..+..   ..+|.|+++.+++|++++++.+.|||||+++++.|+.+|++++.+.+++ +|.++++
T Consensus       166 ~~~~~---~~~D~V~~d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~~i~~  227 (266)
T d1o54a_         166 EGFDE---KDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEV  227 (266)
T ss_dssp             GCCSC---CSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEEE
T ss_pred             ccccc---cceeeeEecCCCHHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCceeEEE
Confidence            34444   6799999999999999999999999999999999999999999999999 7976654

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-38  Score=257.80  Aligned_cols=220  Identities=23%  Similarity=0.365  Sum_probs=187.6

Q ss_pred             CCCCCCEEEEEEcCCc---EEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEEEEECCCHHHHhhhcCCcccc
Q 026506           15 CIKEGDLVIVYERHDC---MKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQI   91 (237)
Q Consensus        15 ~~~~Gd~V~i~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (237)
                      +|++||+|++...++.   .+.+.+..|..++++.|.++|++++|+++|+.+.+..|..++++.|++++|...+++..++
T Consensus         2 ~f~~Gd~vl~~~~~~~~~~~~~~~l~~g~~~~t~~G~~~h~~iiGk~~G~~v~~~~g~~~~v~~Pt~~d~~~~~~r~tqi   81 (324)
T d2b25a1           2 PFQAGELILAETGEGETKFKKLFRLNNFGLLNSNWGAVPFGKIVGKFPGQILRSSFGKQYMLRRPALEDYVVLMKRGTAI   81 (324)
T ss_dssp             CCCTTCEEEEEC----CCCEEEEECCSSCBCC-----CBHHHHTTCCTTEEEECTTSCEEEEECCCHHHHHHHSCCSSCC
T ss_pred             CCCCCCEEEEEecCCceEEEEEEEecCCcEEecCceeeeHHHhcCCCCCcEEEeCCCCEEEEeCCCHHHHhhccCCCCcc
Confidence            6999999999987765   4567889999999999999999999999999999999988889999999999999999999


Q ss_pred             cccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc----------CCCCc
Q 026506           92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT----------GVSSF  161 (237)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~----------~~~~~  161 (237)
                      +||.+++.++..++++||++|||+|||+|.++..+++.+++.++|+++|+++++++.|++|++..          +...+
T Consensus        82 iypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~n  161 (324)
T d2b25a1          82 TFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN  161 (324)
T ss_dssp             CCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCC
T ss_pred             cccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence            99999999999999999999999999999999999999998899999999999999999998764          22345


Q ss_pred             EEEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh---cCccccc
Q 026506          162 VTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL---NFTGKES  235 (237)
Q Consensus       162 i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~---~f~~v~~  235 (237)
                      +++..+|+.+... ......||.||+|.|+||.++.++.+.|||||++++++|+++|+.++.+.|+.   +|.++++
T Consensus       162 v~~~~~di~~~~~-~~~~~~fD~V~LD~p~P~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~~~~f~~i~~  237 (324)
T d2b25a1         162 VDFIHKDISGATE-DIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCEKI  237 (324)
T ss_dssp             EEEEESCTTCCC--------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             eeEEecchhhccc-ccCCCCcceEeecCcCHHHHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHHHcCCCceeeEE
Confidence            9999999875221 11126799999999999999999999999999999999999999999999985   4776553

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.98  E-value=2.2e-31  Score=208.27  Aligned_cols=186  Identities=23%  Similarity=0.331  Sum_probs=145.6

Q ss_pred             ccceeecccccc-CCCCceEEeccCcEEEEECCCHHHHhhhcCCcccccccccHHHHHHhcCCCCCCEEEEEccCccHHH
Q 026506           45 RFGAFKHSDWIG-KPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLT  123 (237)
Q Consensus        45 ~~g~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~  123 (237)
                      -.|.+.|.++.+ ...|+.+.. .|..+++..|.+++|...+++..++++|.+++.++.+++++||++|||+|||+|.++
T Consensus        22 ~~~~~~h~~~~~~~e~g~~~~~-~g~~~~i~~p~~~~~~~~~~r~~qiiypkD~~~Ii~~l~i~pG~rVLEiG~GsG~lt  100 (250)
T d1yb2a1          22 VKGKMHHLGISRVIEPGDELIV-SGKSFIVSDFSPMYFGRVIRRNTQIISEIDASYIIMRCGLRPGMDILEVGVGSGNMS  100 (250)
T ss_dssp             C-CCEEECC-CCCCCTTCEEEE-TTEEEEEECCCGGGHHHHC------------------CCCCTTCEEEEECCTTSHHH
T ss_pred             ecCceeecceecccCCccEEEE-CCeEEEEECCCHHHHHhhCCCCCcccCHHHHHHHHHHcCCCCcCEEEEeeeeCcHHH
Confidence            356677766654 345766655 477778999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcc
Q 026506          124 TSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKML  203 (237)
Q Consensus       124 ~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L  203 (237)
                      ..+++.+++.++|+++|.++++++.|+++++.++...++++..+|+.+ .+++   ..||.|++|.+++|.+++.+.+.|
T Consensus       101 ~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~-~~~~---~~fD~V~ld~p~p~~~l~~~~~~L  176 (250)
T d1yb2a1         101 SYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISD---QMYDAVIADIPDPWNHVQKIASMM  176 (250)
T ss_dssp             HHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCS---CCEEEEEECCSCGGGSHHHHHHTE
T ss_pred             HHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeec-cccc---ceeeeeeecCCchHHHHHHHHHhc
Confidence            999999888899999999999999999999887655559999999874 3444   789999999999999999999999


Q ss_pred             cCCCEEEEEeCCHHHHHHHHHHHHh-cCccccc
Q 026506          204 KQDGILCSFSPCIEQVQRSCESLRL-NFTGKES  235 (237)
Q Consensus       204 ~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~~  235 (237)
                      ||||+++++.|+.+|+.+..+.+++ +|.++++
T Consensus       177 KpGG~lv~~~P~i~Qv~~~~~~l~~~gf~~i~~  209 (250)
T d1yb2a1         177 KPGSVATFYLPNFDQSEKTVLSLSASGMHHLET  209 (250)
T ss_dssp             EEEEEEEEEESSHHHHHHHHHHSGGGTEEEEEE
T ss_pred             CCCceEEEEeCCcChHHHHHHHHHHCCCceeEE
Confidence            9999999999999999999999999 7876653

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.81  E-value=1.2e-19  Score=136.03  Aligned_cols=126  Identities=20%  Similarity=0.202  Sum_probs=107.8

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .++..+.+.++++|||+|||+|.+++.++..   ..+|+++|+++++++.|++|++.+++.+++++..+|+.+...+.  
T Consensus        24 ~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~---~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~--   98 (186)
T d1l3ia_          24 LIMCLAEPGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI--   98 (186)
T ss_dssp             HHHHHHCCCTTCEEEEESCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS--
T ss_pred             HHHHhcCCCCCCEEEEEECCeEccccccccc---ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhccccc--
Confidence            4778889999999999999999999888764   36899999999999999999999999767999999987533333  


Q ss_pred             CCCCCEEEEeCC--ChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cC
Q 026506          179 SGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NF  230 (237)
Q Consensus       179 ~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f  230 (237)
                       ..||.|+++..  ...+.++.+.+.|||||++++.....++.....+.++. +|
T Consensus        99 -~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~  152 (186)
T d1l3ia_          99 -PDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGF  152 (186)
T ss_dssp             -CCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTC
T ss_pred             -CCcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCC
Confidence             67999998764  34568999999999999999888888888888888887 44

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.78  E-value=7.2e-19  Score=136.45  Aligned_cols=108  Identities=22%  Similarity=0.252  Sum_probs=95.0

Q ss_pred             HHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC
Q 026506           98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE  177 (237)
Q Consensus        98 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  177 (237)
                      .++++.++++||++|||+|||+|.++..+++..   .+++++|+|+.+++.|++++...+.++ +.+.++|+.+.+++. 
T Consensus         6 ~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~~-~~~~~~d~~~~~~~~-   80 (234)
T d1xxla_           6 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVEN-VRFQQGTAESLPFPD-   80 (234)
T ss_dssp             HHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCS-EEEEECBTTBCCSCT-
T ss_pred             HHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhccccccc-ccccccccccccccc-
Confidence            347788999999999999999999999998763   689999999999999999998888876 999999998766665 


Q ss_pred             CCCCCCEEEE-----eCCChhchHHHHHhcccCCCEEEEE
Q 026506          178 FSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       178 ~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                        +.||+|++     ..+++..+++++.+.|||||++++.
T Consensus        81 --~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~  118 (234)
T d1xxla_          81 --DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLV  118 (234)
T ss_dssp             --TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --cccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEE
Confidence              78999986     3467788999999999999998874

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=2.6e-18  Score=134.16  Aligned_cols=117  Identities=23%  Similarity=0.158  Sum_probs=98.9

Q ss_pred             cccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC
Q 026506           92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG  171 (237)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~  171 (237)
                      ..+.....+...+++.||++|||+|||+|..+..+++..  ..+|+++|+|+.+++.|+++....++.+++++..+|+.+
T Consensus        17 ~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~   94 (245)
T d1nkva_          17 FTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG   94 (245)
T ss_dssp             CCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT
T ss_pred             CCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhh
Confidence            344445567888999999999999999999999888774  368999999999999999999999988889999999985


Q ss_pred             CCCCCCCCCCCCEEEE-----eCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          172 QGFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       172 ~~~~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      . .++   ++||+|++     +.+++..+++++.+.|||||++++..+
T Consensus        95 ~-~~~---~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~  138 (245)
T d1nkva_          95 Y-VAN---EKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEP  138 (245)
T ss_dssp             C-CCS---SCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             c-ccc---CceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEec
Confidence            3 343   78999986     345667899999999999999997643

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.77  E-value=1.4e-18  Score=134.35  Aligned_cols=111  Identities=24%  Similarity=0.287  Sum_probs=95.6

Q ss_pred             cHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCC
Q 026506           96 DISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP  175 (237)
Q Consensus        96 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  175 (237)
                      +...+++.++++++++|||||||+|.++..+++.   ..+++++|+|+++++.|++++...+.++ +++.++|+.+.+++
T Consensus         3 ~~~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~i~~A~~~~~~~~~~~-i~~~~~d~~~l~~~   78 (231)
T d1vl5a_           3 DLAKLMQIAALKGNEEVLDVATGGGHVANAFAPF---VKKVVAFDLTEDILKVARAFIEGNGHQQ-VEYVQGDAEQMPFT   78 (231)
T ss_dssp             CHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCC-CCCSC
T ss_pred             hHHHHHHhcCCCCcCEEEEecccCcHHHHHHHHh---CCEEEEEECCHHHHhhhhhccccccccc-cccccccccccccc
Confidence            4456888899999999999999999999888876   2689999999999999999998888776 99999999876666


Q ss_pred             CCCCCCCCEEEEe-----CCChhchHHHHHhcccCCCEEEEEe
Q 026506          176 DEFSGLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       176 ~~~~~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .   +.||+|++.     .+++..+++++.+.|||||++++..
T Consensus        79 ~---~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~  118 (231)
T d1vl5a_          79 D---ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVD  118 (231)
T ss_dssp             T---TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             c---cccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            5   789999863     4677789999999999999998753

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=2e-18  Score=131.82  Aligned_cols=118  Identities=20%  Similarity=0.190  Sum_probs=98.5

Q ss_pred             ccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 026506           91 ILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ  170 (237)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~  170 (237)
                      +..|...+.+++.+++++|++|||+|||+|+.+..+++..++.++|+++|+++++++.|+++++..+..+ +.+..+|..
T Consensus        58 i~~P~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n-~~~~~~d~~  136 (213)
T d1dl5a1          58 SSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGY  136 (213)
T ss_dssp             ECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGG
T ss_pred             eccchhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccc-cccccCchH
Confidence            3446666778999999999999999999999999999998888899999999999999999999988877 888889887


Q ss_pred             CCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          171 GQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       171 ~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +.....   +.||+|+++.... ...+.+.+.|||||++++..
T Consensus       137 ~~~~~~---~~fD~I~~~~~~~-~~p~~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         137 YGVPEF---SPYDVIFVTVGVD-EVPETWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             GCCGGG---CCEEEEEECSBBS-CCCHHHHHHEEEEEEEEEEB
T ss_pred             Hccccc---cchhhhhhhccHH-HhHHHHHHhcCCCcEEEEEE
Confidence            433333   6799999876433 35677889999999998643

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.74  E-value=1.4e-17  Score=132.67  Aligned_cols=110  Identities=18%  Similarity=0.208  Sum_probs=95.2

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      +.....+.++.+|||+|||+|.++..+++..  ..+|+++|+++.+++.|+++....++.+++++..+|+.+.+++.   
T Consensus        59 l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~---  133 (282)
T d2o57a1          59 LAMTGVLQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCED---  133 (282)
T ss_dssp             HHHTTCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCT---
T ss_pred             HHHhcCCCCCCEEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhcccccccccccccccccccccccccc---
Confidence            3445578899999999999999999998875  36899999999999999999999998878999999998766665   


Q ss_pred             CCCCEEEE-----eCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          180 GLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       180 ~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      +.||+|++     +.+++..+++++.++|||||++++..+
T Consensus       134 ~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~  173 (282)
T d2o57a1         134 NSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP  173 (282)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEe
Confidence            78999975     456777899999999999999987643

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.74  E-value=1.9e-17  Score=124.75  Aligned_cols=130  Identities=16%  Similarity=0.198  Sum_probs=102.4

Q ss_pred             HHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEccccCCCCCC
Q 026506           98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS-FVTVGVRDIQGQGFPD  176 (237)
Q Consensus        98 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~~~  176 (237)
                      ..+++.+...++.+|||+|||+|.++..++..   ..+++++|+|+.+++.++++++.+++.+ .+++..+|..+ .+++
T Consensus        42 ~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~---~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~  117 (194)
T d1dusa_          42 KILVENVVVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKD  117 (194)
T ss_dssp             HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTT
T ss_pred             HHHHHhCCcCCCCeEEEEeecCChhHHHHHhh---ccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhcc
Confidence            34677888899999999999999999888765   2689999999999999999999888754 48999999874 4554


Q ss_pred             CCCCCCCEEEEeCCCh------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHhcCcccc
Q 026506          177 EFSGLADSIFLDLPQP------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGKE  234 (237)
Q Consensus       177 ~~~~~~D~v~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~v~  234 (237)
                         +.||+|+++++-.      ..+++.+.+.|+|||++++........+...+.+++.|.+++
T Consensus       118 ---~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~~~  178 (194)
T d1dusa_         118 ---RKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVE  178 (194)
T ss_dssp             ---SCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCE
T ss_pred             ---CCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCcEE
Confidence               7899999987632      246899999999999988765555444555555555555544

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=7.3e-18  Score=129.53  Aligned_cols=123  Identities=23%  Similarity=0.233  Sum_probs=100.3

Q ss_pred             CcccccccccHHHHHHhc--CCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC----C
Q 026506           87 HRTQILYIADISFVIMYL--ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS----S  160 (237)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~--~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~----~  160 (237)
                      ....+..|...+.+++.+  ++++|++|||+|||+|+.+..+++..++.++|+++|+++++++.|++++++.+..    .
T Consensus        53 ~~~~is~P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~  132 (224)
T d1i1na_          53 FQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSG  132 (224)
T ss_dssp             TTEEECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTS
T ss_pred             chhhhhhhHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCccccccc
Confidence            445556677777888887  7899999999999999999999999888889999999999999999999876542    3


Q ss_pred             cEEEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          161 FVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       161 ~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ++.+..+|......+.   ..||+|+++...+. ..+.+.+.|||||++++..
T Consensus       133 ~~~~~~gD~~~~~~~~---~~fD~I~~~~~~~~-ip~~l~~~LkpGG~LV~pv  181 (224)
T d1i1na_         133 RVQLVVGDGRMGYAEE---APYDAIHVGAAAPV-VPQALIDQLKPGGRLILPV  181 (224)
T ss_dssp             SEEEEESCGGGCCGGG---CCEEEEEECSBBSS-CCHHHHHTEEEEEEEEEEE
T ss_pred             ceEEEEeecccccchh---hhhhhhhhhcchhh-cCHHHHhhcCCCcEEEEEE
Confidence            4888999987433333   68999998765443 6678899999999998754

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.71  E-value=1.8e-16  Score=121.63  Aligned_cols=137  Identities=20%  Similarity=0.221  Sum_probs=101.5

Q ss_pred             CCCceEEeccCcEEEEECCCHHHHhhhcCCcccccccccHHHHH---HhcCCCCCCEEEEEccCccHHHHHHHHHhCCCc
Q 026506           58 PFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVI---MYLELVPGCLVLESGTGSGSLTTSLARAVAPTG  134 (237)
Q Consensus        58 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~  134 (237)
                      -||+......+..++.+.|...               ...+.++   +.+.++||++|||+|||+|..+.++++..++.+
T Consensus        35 vyge~~~~~~~~e~R~w~p~rS---------------Klaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G   99 (227)
T d1g8aa_          35 VYGERVIKWEGEEYRIWNPNRS---------------KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEG   99 (227)
T ss_dssp             CTTCCEEEETTEEEEECCTTTC---------------HHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTS
T ss_pred             ccCceEEEcCCeeEEEECCCcc---------------HHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCC
Confidence            3677666666666666665321               1122232   345689999999999999999999999998889


Q ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCCh---hchHHHHHhcccCCCEEEE
Q 026506          135 HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP---WLAIPSAKKMLKQDGILCS  211 (237)
Q Consensus       135 ~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~---~~~l~~~~~~L~~gG~l~~  211 (237)
                      +|+++|+++.+++.++++++..+  + +.....|.............+|+|+.+.+.+   +.++.++.+.|||||++++
T Consensus       100 ~V~aVD~s~~~l~~a~~~a~~~~--~-~~~i~~d~~~~~~~~~~~~~vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi  176 (227)
T d1g8aa_         100 KIFGIEFSPRVLRELVPIVEERR--N-IVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMI  176 (227)
T ss_dssp             EEEEEESCHHHHHHHHHHHSSCT--T-EEEEECCTTCGGGGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEEEeCcHHHHHHHHHHHHhcC--C-ceEEEEECCCcccccccccceEEEEEEccccchHHHHHHHHHHhcccCCeEEE
Confidence            99999999999999999876543  4 7777777754211111225789999887654   4579999999999999886


Q ss_pred             E
Q 026506          212 F  212 (237)
Q Consensus       212 ~  212 (237)
                      .
T Consensus       177 ~  177 (227)
T d1g8aa_         177 A  177 (227)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.69  E-value=1.9e-16  Score=120.25  Aligned_cols=128  Identities=19%  Similarity=0.168  Sum_probs=95.3

Q ss_pred             hcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCC
Q 026506          103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA  182 (237)
Q Consensus       103 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  182 (237)
                      .+.++||++|||+|||+|..+.+++... +.++|+++|+++.+++.|+++.+..+  + +.+...|.............+
T Consensus        51 ~l~lkpg~~VLDlGcG~G~~~~~la~~v-~~g~V~gvDis~~~i~~a~~~a~~~~--n-i~~i~~d~~~~~~~~~~~~~v  126 (209)
T d1nt2a_          51 RLKLRGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVRERN--N-IIPLLFDASKPWKYSGIVEKV  126 (209)
T ss_dssp             CCCCCSSCEEEEETCTTSHHHHHHHHHT-TTSEEEEECCCHHHHHHHHHHHHHCS--S-EEEECSCTTCGGGTTTTCCCE
T ss_pred             cCCCCCCCEEEEeCCcCCHHHHHHHHhc-cCCeEEEEeCCHHHHHHHHHHhhccC--C-ceEEEeeccCccccccccceE
Confidence            4678999999999999999999999987 45799999999999999999887654  4 889999887533333222457


Q ss_pred             CEEEEeCCChh---chHHHHHhcccCCCEEEEEeC---------CHHHHHHHHHHHHhcCcccc
Q 026506          183 DSIFLDLPQPW---LAIPSAKKMLKQDGILCSFSP---------CIEQVQRSCESLRLNFTGKE  234 (237)
Q Consensus       183 D~v~~~~~~~~---~~l~~~~~~L~~gG~l~~~~~---------~~~~~~~~~~~l~~~f~~v~  234 (237)
                      |+|+.+.+.+.   .++.++.+.|||||++++...         .....+...+.++++|.-++
T Consensus       127 d~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~~gf~i~E  190 (209)
T d1nt2a_         127 DLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGDFKIVK  190 (209)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred             EEEEecccChhhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence            77777765433   579999999999999986531         11223444445555776544

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.69  E-value=2.2e-17  Score=128.89  Aligned_cols=120  Identities=23%  Similarity=0.244  Sum_probs=96.8

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      .++|++|||+|||+|.+++.+++.  + .+|+++|+++.+++.|++|++.+++.  .++..+|+.. .++.   ++||+|
T Consensus       118 ~~~g~~VLDiGcGsG~l~i~aa~~--g-~~V~gvDis~~av~~A~~na~~n~~~--~~~~~~d~~~-~~~~---~~fD~V  188 (254)
T d2nxca1         118 LRPGDKVLDLGTGSGVLAIAAEKL--G-GKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEA-ALPF---GPFDLL  188 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT--T-CEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHH-HGGG---CCEEEE
T ss_pred             cCccCEEEEcccchhHHHHHHHhc--C-CEEEEEECChHHHHHHHHHHHHcCCc--eeEEeccccc-cccc---cccchh
Confidence            578999999999999999876653  2 68999999999999999999998875  4677888763 3443   789999


Q ss_pred             EEeCCCh--hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCcccc
Q 026506          186 FLDLPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGKE  234 (237)
Q Consensus       186 ~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~  234 (237)
                      +.+....  ...++.+.+.|||||++++.+....+.+.+.+.+++ +|..++
T Consensus       189 ~ani~~~~l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~  240 (254)
T d2nxca1         189 VANLYAELHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLE  240 (254)
T ss_dssp             EEECCHHHHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEE
T ss_pred             hhccccccHHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEE
Confidence            9886432  357788999999999999766666777888888888 787554

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.68  E-value=6.9e-17  Score=124.36  Aligned_cols=103  Identities=17%  Similarity=0.187  Sum_probs=84.8

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVA-PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      .+++.+|||+|||+|..+..+++... +..+|+++|+|++|++.|+++++..+....+.+...|+.+  ++.   ..+|+
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~--~~~---~~~d~  111 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH--VEI---KNASM  111 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTT--CCC---CSEEE
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhc--ccc---cccee
Confidence            57889999999999999999988652 5679999999999999999998877766668888888764  443   56888


Q ss_pred             EEEeC-------CChhchHHHHHhcccCCCEEEEEe
Q 026506          185 IFLDL-------PQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       185 v~~~~-------~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      |++..       .+...+++++++.|||||.+++..
T Consensus       112 i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~  147 (225)
T d1im8a_         112 VILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE  147 (225)
T ss_dssp             EEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEeeeccccChhhHHHHHHHHHHhCCCCceeeccc
Confidence            87632       244578999999999999999764

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.67  E-value=2.6e-16  Score=121.10  Aligned_cols=158  Identities=15%  Similarity=0.151  Sum_probs=107.7

Q ss_pred             CCCceEEeccCcEEEEECCCHHHHhhhcCCcccccccccHHHH---HHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCc
Q 026506           58 PFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFV---IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTG  134 (237)
Q Consensus        58 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~  134 (237)
                      .||+......+..++.+.|.....               .+.+   +..+.++||++|||+|||+|..+.+++... +.+
T Consensus        36 ~y~e~~~~~~~~e~r~w~p~rskl---------------aA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~-~~g   99 (230)
T d1g8sa_          36 VYDEKIIKIGDEEYRIWNPNKSKL---------------AAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIA-DKG   99 (230)
T ss_dssp             SSSCCEEEETTEEEEECCTTTCHH---------------HHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHT-TTS
T ss_pred             ccCceeeecCCceeeeECCCccHH---------------HHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhC-CCC
Confidence            367777666666666666643211               1112   234568999999999999999999999874 668


Q ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCC---ChhchHHHHHhcccCCCEEEE
Q 026506          135 HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP---QPWLAIPSAKKMLKQDGILCS  211 (237)
Q Consensus       135 ~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~---~~~~~l~~~~~~L~~gG~l~~  211 (237)
                      .|+++|+++.+++.++++....+  + +.++..|.............+|+++.+..   +...++.++.+.|||||.+++
T Consensus       100 ~V~aVDiS~~~i~~a~~~a~~~~--n-i~~i~~d~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i  176 (230)
T d1g8sa_         100 IVYAIEYAPRIMRELLDACAERE--N-IIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMI  176 (230)
T ss_dssp             EEEEEESCHHHHHHHHHHTTTCT--T-EEEEECCTTCGGGGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEEEeCcHHHHHHHHHHHhhhc--c-cceEEEeeccCcccccccceeEEeeccccchHHHHHHHHHHHHhcccCceEEE
Confidence            99999999999999998765432  4 77788887652221111123444444433   344679999999999999886


Q ss_pred             E---------eCCHHHHHHHHHHHHh-cCcccc
Q 026506          212 F---------SPCIEQVQRSCESLRL-NFTGKE  234 (237)
Q Consensus       212 ~---------~~~~~~~~~~~~~l~~-~f~~v~  234 (237)
                      .         .+.....++..+.|++ ||..++
T Consensus       177 ~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive  209 (230)
T d1g8sa_         177 AIKARSIDVTKDPKEIFKEQKEILEAGGFKIVD  209 (230)
T ss_dssp             EEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEE
T ss_pred             EeeccccCCCCCHHHHHHHHHHHHHHcCCEEEE
Confidence            5         2223445677778887 887654

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.67  E-value=1.7e-16  Score=120.66  Aligned_cols=120  Identities=27%  Similarity=0.315  Sum_probs=100.2

Q ss_pred             CcccccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 026506           87 HRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV  166 (237)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~  166 (237)
                      .+..+..|...+.+++.++++++++|||+|||+|+.+..++...+  .+|+++|.++++.+.|+++++..+..+ +.+..
T Consensus        57 ~g~~is~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g--~~V~~ie~~~~l~~~a~~~l~~~g~~n-v~~~~  133 (215)
T d1jg1a_          57 AGQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKN-VHVIL  133 (215)
T ss_dssp             TTCEECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCS-EEEEE
T ss_pred             hhhhhhhhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhC--ceeEEEeccHHHHHHHHHHHHHcCCce-eEEEE
Confidence            445566677778899999999999999999999999998888863  579999999999999999999999887 99999


Q ss_pred             ccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          167 RDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       167 ~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +|... .++..  +.||+|++..... ..-+.+.+.|+|||++++..
T Consensus       134 gd~~~-g~~~~--~pfD~Iiv~~a~~-~ip~~l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         134 GDGSK-GFPPK--APYDVIIVTAGAP-KIPEPLIEQLKIGGKLIIPV  176 (215)
T ss_dssp             SCGGG-CCGGG--CCEEEEEECSBBS-SCCHHHHHTEEEEEEEEEEE
T ss_pred             Ccccc-CCccc--CcceeEEeecccc-cCCHHHHHhcCCCCEEEEEE
Confidence            99984 34432  7899999876543 35567888999999998643

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.67  E-value=9.5e-16  Score=115.74  Aligned_cols=116  Identities=16%  Similarity=0.272  Sum_probs=99.8

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC--CCCCCCCCCCCEE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDEFSGLADSI  185 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~~D~v  185 (237)
                      +.-.|||||||+|..+..+|.. .|...++++|+++.++..|.+++...++.| +.+..+|+...  .++.   +.+|.|
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~-~p~~~~iGiD~~~~~i~~a~~~~~~~~l~N-v~~~~~Da~~l~~~~~~---~~~d~v  103 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQ-NPDINYIGIELFKSVIVTAVQKVKDSEAQN-VKLLNIDADTLTDVFEP---GEVKRV  103 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHH-CTTSEEEEECSCHHHHHHHHHHHHHSCCSS-EEEECCCGGGHHHHCCT---TSCCEE
T ss_pred             CCceEEEEEecCcHHHHHHHHh-CCCCcEEEeecchHHHHHHHHHHHHHhccC-chhcccchhhhhcccCc---hhhhcc
Confidence            3458999999999999999988 477999999999999999999999999987 99999998752  2444   789999


Q ss_pred             EEeCCChh-------------chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh
Q 026506          186 FLDLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL  228 (237)
Q Consensus       186 ~~~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~  228 (237)
                      ++..|+||             ++++.+.+.|||||.|++.+......+.+++.+.+
T Consensus       104 ~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~  159 (204)
T d2fcaa1         104 YLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSE  159 (204)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHH
T ss_pred             ccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHH
Confidence            98877764             47999999999999999888888878888887776

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=3.8e-16  Score=122.71  Aligned_cols=122  Identities=17%  Similarity=0.234  Sum_probs=100.6

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      ..+.+|||+|||+|..++.++... +..+++++|+|+.+++.|++|++.+++.+ +++..+|+.+ .++.   .+||+|+
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~-p~~~v~avDis~~Al~~A~~Na~~~~~~~-v~~~~~d~~~-~~~~---~~fDlIv  180 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKN-IHILQSDWFS-ALAG---QQFAMIV  180 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCCS-EEEECCSTTG-GGTT---CCEEEEE
T ss_pred             ccccceeeeehhhhHHHHHHHhhC-CcceeeeccchhHHHhHHHHHHHHhCccc-ceeeeccccc-ccCC---CceeEEE
Confidence            456789999999999999998885 67899999999999999999999999866 9999999874 4443   6899999


Q ss_pred             EeCCCh------------------------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCccccc
Q 026506          187 LDLPQP------------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGKES  235 (237)
Q Consensus       187 ~~~~~~------------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~~  235 (237)
                      .|+|--                              ...++.+.+.|+|||.+++-.. ..|.+.+.+.+++ +|..+++
T Consensus       181 sNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig-~~q~~~v~~~l~~~gf~~i~~  259 (274)
T d2b3ta1         181 SNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG-WQQGEAVRQAFILAGYHDVET  259 (274)
T ss_dssp             ECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC-SSCHHHHHHHHHHTTCTTCCE
T ss_pred             ecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEEC-chHHHHHHHHHHHCCCCeEEE
Confidence            998711                              1367888999999999997544 3556777888887 8988765

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.65  E-value=3.9e-16  Score=119.33  Aligned_cols=113  Identities=23%  Similarity=0.239  Sum_probs=90.7

Q ss_pred             cccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc
Q 026506           90 QILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI  169 (237)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~  169 (237)
                      .+..|...+.+++.++++++++|||+|||+|+++..++...   ++|+++|+++++.+.|++++...  .+ +.+..+|.
T Consensus        52 ~~~~p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~~--~n-v~~~~~d~  125 (224)
T d1vbfa_          52 NTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYY--NN-IKLILGDG  125 (224)
T ss_dssp             EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTC--SS-EEEEESCG
T ss_pred             ceehhhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhcc--cc-cccccCch
Confidence            34455566678899999999999999999999998888763   68999999999999999987543  34 99999998


Q ss_pred             cCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEE
Q 026506          170 QGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       170 ~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                      .. .++..  ++||+|++....+ ...+.+.+.|+|||+|++.
T Consensus       126 ~~-g~~~~--~pfD~Iiv~~a~~-~ip~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         126 TL-GYEEE--KPYDRVVVWATAP-TLLCKPYEQLKEGGIMILP  164 (224)
T ss_dssp             GG-CCGGG--CCEEEEEESSBBS-SCCHHHHHTEEEEEEEEEE
T ss_pred             hh-cchhh--hhHHHHHhhcchh-hhhHHHHHhcCCCCEEEEE
Confidence            73 34432  6799999876433 3667788999999999864

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.64  E-value=7.5e-15  Score=110.74  Aligned_cols=116  Identities=20%  Similarity=0.324  Sum_probs=98.9

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC--CCCCCCCCCCCCEE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLADSI  185 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~~~~D~v  185 (237)
                      ....|||||||+|..+..+|... |...++|+|+++.++..|.+++...++.| +.+..+|+..  ..++.   ..+|.|
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~-p~~~~iGid~~~~~v~~a~~~~~~~~l~N-i~~~~~da~~l~~~~~~---~~~~~i  105 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGVPN-IKLLWVDGSDLTDYFED---GEIDRL  105 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCCSS-EEEEECCSSCGGGTSCT---TCCSEE
T ss_pred             CCCeEEEEeccCCHHHHHHHHHC-CCCceEEEeccHHHHHHHHHhhhhhcccc-ceeeecCHHHHhhhccC---Cceehh
Confidence            34589999999999999999985 77899999999999999999999999887 9999999875  22344   789999


Q ss_pred             EEeCCChh-------------chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh
Q 026506          186 FLDLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL  228 (237)
Q Consensus       186 ~~~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~  228 (237)
                      ++..|+||             ++++.+.+.|||||.+.+.+......+.+++.+..
T Consensus       106 ~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~  161 (204)
T d1yzha1         106 YLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQ  161 (204)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             cccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHH
Confidence            99988875             57899999999999999888777777777776665

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.64  E-value=2.3e-15  Score=119.23  Aligned_cols=106  Identities=15%  Similarity=0.183  Sum_probs=89.2

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .+++.++++||++|||||||+|+++..+++..  ..+|+++|+|++.++.|++++...++...+.+...|..+  ++   
T Consensus        43 ~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~--g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~--~~---  115 (280)
T d2fk8a1          43 LNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED--FA---  115 (280)
T ss_dssp             HHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG--CC---
T ss_pred             HHHHHcCCCCCCEEEEecCCchHHHHHHHHhC--ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh--hc---
Confidence            47788899999999999999999999988876  369999999999999999999998987778888888753  33   


Q ss_pred             CCCCCEEEE-----eCCCh--hchHHHHHhcccCCCEEEEE
Q 026506          179 SGLADSIFL-----DLPQP--WLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       179 ~~~~D~v~~-----~~~~~--~~~l~~~~~~L~~gG~l~~~  212 (237)
                       +.||.|+.     +.+..  ..+++++.+.|||||++++-
T Consensus       116 -~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~  155 (280)
T d2fk8a1         116 -EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQ  155 (280)
T ss_dssp             -CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEE
T ss_pred             -cchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEE
Confidence             67999975     23322  46899999999999999864

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.63  E-value=5e-15  Score=117.60  Aligned_cols=107  Identities=18%  Similarity=0.185  Sum_probs=90.8

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .+++.+++++|++|||||||.|+++..+++..  .++|+++++|++.++.+++++...++.+++.+...|..   ..+  
T Consensus        52 ~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~--g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~---~~~--  124 (291)
T d1kpia_          52 LALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY--DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE---EFD--  124 (291)
T ss_dssp             HHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG---GCC--
T ss_pred             HHHHhcCCCCCCEEEEecCcchHHHHHHHHhc--CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc---ccc--
Confidence            47788999999999999999999999999886  36999999999999999999999999888999888864   233  


Q ss_pred             CCCCCEEEE-----eCCC---------hhchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFL-----DLPQ---------PWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~-----~~~~---------~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                       ++||.|+.     +.++         ...+++++.+.|||||++++-.
T Consensus       125 -~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~  172 (291)
T d1kpia_         125 -EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  172 (291)
T ss_dssp             -CCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             -cccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence             78999874     3332         2368999999999999998654

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.62  E-value=1.8e-15  Score=115.92  Aligned_cols=104  Identities=19%  Similarity=0.156  Sum_probs=84.4

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ++++.+|||+|||+|.++..+++.   ..+|+++|+|+++++.|+++....+.  .+.+...|+.+.+++.   +.||+|
T Consensus        35 l~~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~d~~~l~~~~---~~fD~I  106 (226)
T d1ve3a1          35 MKKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARKLSFED---KTFDYV  106 (226)
T ss_dssp             CCSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCTTSCCSCT---TCEEEE
T ss_pred             cCCCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhccccc--cccccccccccccccC---cCceEE
Confidence            467789999999999999998875   36899999999999999998876663  2677888988766665   789999


Q ss_pred             EEeC-----C--ChhchHHHHHhcccCCCEEEEEeCCHH
Q 026506          186 FLDL-----P--QPWLAIPSAKKMLKQDGILCSFSPCIE  217 (237)
Q Consensus       186 ~~~~-----~--~~~~~l~~~~~~L~~gG~l~~~~~~~~  217 (237)
                      ++..     +  +...+++++.+.|||||++++..+...
T Consensus       107 ~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~~~  145 (226)
T d1ve3a1         107 IFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLR  145 (226)
T ss_dssp             EEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred             EEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcCch
Confidence            8642     2  234589999999999999987776553

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.61  E-value=1.1e-15  Score=116.95  Aligned_cols=122  Identities=19%  Similarity=0.289  Sum_probs=95.1

Q ss_pred             CcccccccccHHHHHHhc--CCCCCCEEEEEccCccHHHHHHHHHhCC-----CcEEEEEeCCHHHHHHHHHHHHHc---
Q 026506           87 HRTQILYIADISFVIMYL--ELVPGCLVLESGTGSGSLTTSLARAVAP-----TGHVYTFDFHEQRAASAREDFERT---  156 (237)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~--~~~~~~~vldiG~G~G~~~~~~~~~~~~-----~~~v~~vD~~~~~~~~a~~~~~~~---  156 (237)
                      ....+..|...+.+++.+  +++++++|||+|||+|+.+..+++.+++     ..+|+++|.++++++.|++++...   
T Consensus        57 ~~~~is~P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~  136 (223)
T d1r18a_          57 GGVTISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS  136 (223)
T ss_dssp             TTEEECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             CCceeehhhhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchh
Confidence            344455566677788877  7899999999999999999999887643     248999999999999999886543   


Q ss_pred             --CCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          157 --GVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       157 --~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                        +..+ +.+..+|..+ .++..  +.||+|+++...+ ..-+.+.+.|||||++++..
T Consensus       137 ~~~~~n-v~~~~~d~~~-~~~~~--~~fD~Iiv~~a~~-~~p~~l~~~Lk~gG~lV~pv  190 (223)
T d1r18a_         137 MLDSGQ-LLIVEGDGRK-GYPPN--APYNAIHVGAAAP-DTPTELINQLASGGRLIVPV  190 (223)
T ss_dssp             HHHHTS-EEEEESCGGG-CCGGG--CSEEEEEECSCBS-SCCHHHHHTEEEEEEEEEEE
T ss_pred             hcCccE-EEEEeccccc-ccccc--cceeeEEEEeech-hchHHHHHhcCCCcEEEEEE
Confidence              3445 8999999874 33332  6899999877543 35678899999999998643

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.61  E-value=9.3e-15  Score=115.72  Aligned_cols=107  Identities=17%  Similarity=0.194  Sum_probs=91.3

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .+++.++++||++|||||||.|+++..+++..  .++|+++++|++.++.|++++...+..+++++...|..+  ++   
T Consensus        53 ~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~--g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~--~~---  125 (285)
T d1kpga_          53 LALGKLGLQPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ--FD---  125 (285)
T ss_dssp             HHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG--CC---
T ss_pred             HHHHHcCCCCCCEEEEecCcchHHHHHHHhcC--CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhc--cc---
Confidence            47788899999999999999999999999886  379999999999999999999888888889999999864  33   


Q ss_pred             CCCCCEEEE-----eCC--ChhchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFL-----DLP--QPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~-----~~~--~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                       +.||.|+.     +..  ....+++++.++|||||++++..
T Consensus       126 -~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~  166 (285)
T d1kpga_         126 -EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT  166 (285)
T ss_dssp             -CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             -ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEE
Confidence             67999874     232  23568999999999999998643

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.61  E-value=6.4e-15  Score=115.10  Aligned_cols=110  Identities=21%  Similarity=0.175  Sum_probs=87.9

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      .+++.+|||+|||+|..+..++..  +.++|+|+|+|+.+++.|+++....+...++.+..+|+....+..  .+.||+|
T Consensus        22 ~~~~~~VLDlGCG~G~~~~~~~~~--~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~--~~~fD~V   97 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDL--GKEFDVI   97 (252)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCC--SSCEEEE
T ss_pred             CCCcCEEEEecccCcHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccc--cccceEE
Confidence            567899999999999998888776  346899999999999999999887776666999999987544432  2689999


Q ss_pred             EEeCCC-----h----hchHHHHHhcccCCCEEEEEeCCHHHH
Q 026506          186 FLDLPQ-----P----WLAIPSAKKMLKQDGILCSFSPCIEQV  219 (237)
Q Consensus       186 ~~~~~~-----~----~~~l~~~~~~L~~gG~l~~~~~~~~~~  219 (237)
                      ++...-     +    ..+++++.+.|||||++++..+..+.+
T Consensus        98 ~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i  140 (252)
T d1ri5a_          98 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVI  140 (252)
T ss_dssp             EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHH
T ss_pred             EEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHH
Confidence            874321     1    257899999999999999888876543

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=5.2e-16  Score=119.13  Aligned_cols=124  Identities=15%  Similarity=0.122  Sum_probs=95.4

Q ss_pred             CCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       105 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      ...++.+|||+|||+|.++..++...  ..+|+++|+|+++++.|++++...+..+ +++.++|+.+..++.   +.||+
T Consensus        57 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~ak~~~~~~~~~~-~~f~~~d~~~~~~~~---~~fD~  130 (222)
T d2ex4a1          57 NKTGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRV-RNYFCCGLQDFTPEP---DSYDV  130 (222)
T ss_dssp             -CCCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGE-EEEEECCGGGCCCCS---SCEEE
T ss_pred             CCCCCCEEEEeccCCCHhhHHHHHhc--CCEEEEeecCHHHhhccccccccccccc-ccccccccccccccc---ccccc
Confidence            45677899999999999998876553  3689999999999999999987766655 899999998755554   78999


Q ss_pred             EEEe-----CCCh--hchHHHHHhcccCCCEEEEEeCCHH--------------HHHHHHHHHHh-cCcccc
Q 026506          185 IFLD-----LPQP--WLAIPSAKKMLKQDGILCSFSPCIE--------------QVQRSCESLRL-NFTGKE  234 (237)
Q Consensus       185 v~~~-----~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~--------------~~~~~~~~l~~-~f~~v~  234 (237)
                      |++.     .+++  .++++++.+.|+|||.+++..+...              ..+.+.+.+.+ ||..++
T Consensus       131 I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~  202 (222)
T d2ex4a1         131 IWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLA  202 (222)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEE
T ss_pred             cccccccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEE
Confidence            9863     2332  3689999999999999987633221              24667777777 787654

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.60  E-value=2.8e-15  Score=119.05  Aligned_cols=105  Identities=18%  Similarity=0.157  Sum_probs=88.8

Q ss_pred             CCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       105 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      .+..+.+|||+|||+|.++..++...+...+|+++|+++.+++.|+++....+.  ++++...|+.+..++    +.||+
T Consensus        24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~~~~----~~fD~   97 (281)
T d2gh1a1          24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIELN----DKYDI   97 (281)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCCS----SCEEE
T ss_pred             ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--ccccccccccccccc----CCceE
Confidence            566788999999999999999988775567999999999999999999877664  388999998764332    57999


Q ss_pred             EEEe-----CCChhchHHHHHhcccCCCEEEEEeCC
Q 026506          185 IFLD-----LPQPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       185 v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      |++.     .+++..+++++.+.|||||.+++..|.
T Consensus        98 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~  133 (281)
T d2gh1a1          98 AICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  133 (281)
T ss_dssp             EEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence            9864     467778999999999999999988765

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.59  E-value=2.6e-15  Score=117.07  Aligned_cols=107  Identities=20%  Similarity=0.197  Sum_probs=85.8

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ++......++.+|||+|||+|..+..+++.   ..+++++|+|+.+++.|++++...+.  ++++..+|+.+..++    
T Consensus        33 ~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~---~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~~~----  103 (251)
T d1wzna1          33 IFKEDAKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFK----  103 (251)
T ss_dssp             HHHHTCSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCC----
T ss_pred             HHHHhcCCCCCEEEEeCCCCCccchhhccc---ceEEEEEeeccccccccccccccccc--cchheehhhhhcccc----
Confidence            444556677889999999999999988875   36899999999999999999887664  388999999864443    


Q ss_pred             CCCCEEEEeC--------CChhchHHHHHhcccCCCEEEEEeCC
Q 026506          180 GLADSIFLDL--------PQPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       180 ~~~D~v~~~~--------~~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      +.||+|++..        ++...+|+++.+.|||||++++-.++
T Consensus       104 ~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~  147 (251)
T d1wzna1         104 NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC  147 (251)
T ss_dssp             SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence            5799988632        12336899999999999999875544

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.58  E-value=9.4e-15  Score=110.02  Aligned_cols=106  Identities=19%  Similarity=0.170  Sum_probs=85.0

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      ++..+....+.+|||+|||+|..+..++++   ..+|+++|+++.+++.++++....++++ +++...|+....++    
T Consensus        22 ~~~~~~~~~~grvLDiGcG~G~~~~~la~~---g~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~d~~~~~~~----   93 (198)
T d2i6ga1          22 VLAAAKVVAPGRTLDLGCGNGRNSLYLAAN---GYDVTAWDKNPASMANLERIKAAEGLDN-LQTDLVDLNTLTFD----   93 (198)
T ss_dssp             HHHHHTTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEECCTTTCCCC----
T ss_pred             HHHHcccCCCCcEEEECCCCCHHHHHHHHH---hhhhccccCcHHHHHHHHHHhhhccccc-hhhhheeccccccc----
Confidence            344444444559999999999999999876   3689999999999999999998888876 99999998754433    


Q ss_pred             CCCCEEEEeC-----CC--hhchHHHHHhcccCCCEEEEEe
Q 026506          180 GLADSIFLDL-----PQ--PWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       180 ~~~D~v~~~~-----~~--~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +.||+|++..     +.  ...+++++.+.|+|||++++..
T Consensus        94 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  134 (198)
T d2i6ga1          94 GEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVA  134 (198)
T ss_dssp             CCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            6799998643     22  2368999999999999988764

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.57  E-value=1.3e-14  Score=113.36  Aligned_cols=108  Identities=21%  Similarity=0.289  Sum_probs=89.8

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .++..++..+..+|||+|||+|.++..+++.. +..+++++|+ +++++.+++++...+..+++++..+|+.+ ..+   
T Consensus        71 ~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~-~~~---  144 (253)
T d1tw3a2          71 APAAAYDWTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLP---  144 (253)
T ss_dssp             HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS---
T ss_pred             HHHhhcCCccCCEEEEeCCCCCHHHHHHHHhc-ceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchh-hcc---
Confidence            46777788888999999999999999999885 6689999998 77899999999988888889999999874 333   


Q ss_pred             CCCCCEEEEeC-----CCh--hchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFLDL-----PQP--WLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~~-----~~~--~~~l~~~~~~L~~gG~l~~~~  213 (237)
                       .+||+|++..     ++.  ..+|+++.+.|||||++++..
T Consensus       145 -~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e  185 (253)
T d1tw3a2         145 -RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHE  185 (253)
T ss_dssp             -SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             -cchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEe
Confidence             5699998643     222  257999999999999999764

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.56  E-value=9.7e-15  Score=114.17  Aligned_cols=102  Identities=22%  Similarity=0.246  Sum_probs=88.2

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..+|++|||+|||+|.+++.++..  +.++|+++|+|+.+++.+++|++.+++.+++++..+|+.+  +...  +.||.|
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~--~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~--~~~~--~~~D~I  178 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRD--FPGE--NIADRI  178 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHH--TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTT--CCCC--SCEEEE
T ss_pred             cCCccEEEECcceEcHHHHHHHHh--CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHH--hccC--CCCCEE
Confidence            478999999999999999998876  3479999999999999999999999999889999999975  3321  679999


Q ss_pred             EEeCC-ChhchHHHHHhcccCCCEEEEEe
Q 026506          186 FLDLP-QPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       186 ~~~~~-~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +++.| ....++..+.+.|++||.+.++.
T Consensus       179 i~~~p~~~~~~l~~a~~~l~~gG~lh~~~  207 (260)
T d2frna1         179 LMGYVVRTHEFIPKALSIAKDGAIIHYHN  207 (260)
T ss_dssp             EECCCSSGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             EECCCCchHHHHHHHHhhcCCCCEEEEEe
Confidence            99765 45678999999999999997664

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.55  E-value=1.1e-14  Score=112.84  Aligned_cols=99  Identities=24%  Similarity=0.304  Sum_probs=79.9

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..++.+|||+|||+|.++..++..   ..+|+++|+|+.+++.|+++    +...   +..+|+.+.+++.   +.||+|
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~----~~~~---~~~~~~~~l~~~~---~~fD~i  106 (246)
T d2avna1          40 LKNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREK----GVKN---VVEAKAEDLPFPS---GAFEAV  106 (246)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHH----TCSC---EEECCTTSCCSCT---TCEEEE
T ss_pred             cCCCCEEEEECCCCchhccccccc---ceEEEEeecccccccccccc----cccc---ccccccccccccc---ccccce
Confidence            346789999999999999988865   36899999999999999985    3222   4567887665655   789998


Q ss_pred             EEe------CCChhchHHHHHhcccCCCEEEEEeCCHH
Q 026506          186 FLD------LPQPWLAIPSAKKMLKQDGILCSFSPCIE  217 (237)
Q Consensus       186 ~~~------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  217 (237)
                      ++.      .+++..+++++.+.|||||.+++..+...
T Consensus       107 i~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~~~  144 (246)
T d2avna1         107 LALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFY  144 (246)
T ss_dssp             EECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBHH
T ss_pred             eeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEECCHH
Confidence            752      45777899999999999999998877543

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.55  E-value=1.8e-14  Score=112.56  Aligned_cols=128  Identities=12%  Similarity=0.105  Sum_probs=96.6

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .++..+...++.+|||+|||+|.++..++...  ..+|+++|+++.+++.|+++....   +.+++.+.|+.+..++.  
T Consensus        84 ~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~--~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~~~~~~--  156 (254)
T d1xtpa_          84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPP--  156 (254)
T ss_dssp             HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCS--
T ss_pred             HHHhhCCCCCCCeEEEecccCChhhHHHHhhc--CceEEEEcCCHHHHHhhhcccccc---ccceeEEccccccccCC--
Confidence            35667777788899999999999999887664  258999999999999999875422   33889999997655554  


Q ss_pred             CCCCCEEEEeC-----CCh--hchHHHHHhcccCCCEEEEEeCCHH---------------HHHHHHHHHHh-cCcccc
Q 026506          179 SGLADSIFLDL-----PQP--WLAIPSAKKMLKQDGILCSFSPCIE---------------QVQRSCESLRL-NFTGKE  234 (237)
Q Consensus       179 ~~~~D~v~~~~-----~~~--~~~l~~~~~~L~~gG~l~~~~~~~~---------------~~~~~~~~l~~-~f~~v~  234 (237)
                       +.||+|++..     +++  ..+++++.+.|+|||.+++..++..               +.+.+.+.+++ ||..++
T Consensus       157 -~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~  234 (254)
T d1xtpa_         157 -NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVK  234 (254)
T ss_dssp             -SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEE
T ss_pred             -CccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEE
Confidence             7899998643     333  2679999999999999987543221               14567777777 786554

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.55  E-value=1e-13  Score=108.37  Aligned_cols=110  Identities=21%  Similarity=0.254  Sum_probs=90.8

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .++...+..+..+|||+|||+|.++..++++. |..+++++|+ ++.++.++++++..+..+++.+..+|+.+ ..+   
T Consensus        72 ~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p---  145 (256)
T d1qzza2          72 APADAYDWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP---  145 (256)
T ss_dssp             HHHHTSCCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS---
T ss_pred             HHHhcCCCccCCEEEEECCCCCHHHHHHHHhh-cCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc---
Confidence            46667777888899999999999999999985 6789999997 88999999999988888889999999874 344   


Q ss_pred             CCCCCEEEEe-----CCCh--hchHHHHHhcccCCCEEEEEeCC
Q 026506          179 SGLADSIFLD-----LPQP--WLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       179 ~~~~D~v~~~-----~~~~--~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                       .++|+|++.     .++.  ..+|+++.+.|||||++++....
T Consensus       146 -~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~  188 (256)
T d1qzza2         146 -VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA  188 (256)
T ss_dssp             -CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             -ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEec
Confidence             459998763     2322  25799999999999999987643

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=5.4e-15  Score=113.92  Aligned_cols=100  Identities=22%  Similarity=0.181  Sum_probs=78.3

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC--CCCCCCCCCCCC
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLAD  183 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~~~~D  183 (237)
                      ..+|.+|||||||+|..+..+++..  ..+++++|+|+.+++.|+++.+..+  ..+.....|+..  ..++.   +.||
T Consensus        51 ~~~g~~VLdIGcG~G~~a~~~a~~~--~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~fD  123 (229)
T d1zx0a1          51 SSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPD---GHFD  123 (229)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCT---TCEE
T ss_pred             ccCCCeEEEeeccchHHHHHHHHcC--CCeEEEeCCCHHHHHHHHHHhhhcc--ccccccccccccccccccc---cccc
Confidence            3678899999999999999888752  3689999999999999999887654  336677776543  23444   7899


Q ss_pred             EEEEeCC----------ChhchHHHHHhcccCCCEEEEE
Q 026506          184 SIFLDLP----------QPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       184 ~v~~~~~----------~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                      .|+.|..          ++..+++++.++|||||++++.
T Consensus       124 ~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         124 GILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             EEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             ceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence            9987653          2235789999999999999864

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.53  E-value=1.4e-14  Score=117.02  Aligned_cols=106  Identities=23%  Similarity=0.198  Sum_probs=86.6

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCCCCCCCCCE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLADS  184 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~~D~  184 (237)
                      .++|.+|||+|||+|++++.++..  +..+|+++|+++.+++.+++|+..+|+.+++++..+|+.+.. .....+.+||+
T Consensus       143 ~~~g~~VLDl~~g~G~~si~~a~~--ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~  220 (324)
T d2as0a2         143 VQPGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDI  220 (324)
T ss_dssp             CCTTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             cCCCCeeecccCcccchhhhhhhc--CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCc
Confidence            578999999999999999887765  446999999999999999999999999777999999987410 00011267999


Q ss_pred             EEEeCCCh--------------hchHHHHHhcccCCCEEEEEe
Q 026506          185 IFLDLPQP--------------WLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       185 v~~~~~~~--------------~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      |++|+|..              ..++..+.++|+|||+|+..+
T Consensus       221 Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s  263 (324)
T d2as0a2         221 VVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS  263 (324)
T ss_dssp             EEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            99999843              347888899999999998665

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.52  E-value=1.1e-14  Score=110.45  Aligned_cols=91  Identities=23%  Similarity=0.196  Sum_probs=74.4

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      .++.+|||+|||+|.++..+       .+++++|+|+.+++.++++       + +.+..+|+.+.+++.   +.||+|+
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~-------~~~~giD~s~~~~~~a~~~-------~-~~~~~~d~~~l~~~~---~~fD~I~   96 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPL-------KIKIGVEPSERMAEIARKR-------G-VFVLKGTAENLPLKD---ESFDFAL   96 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHH-------TCCEEEESCHHHHHHHHHT-------T-CEEEECBTTBCCSCT---TCEEEEE
T ss_pred             CCCCeEEEECCCCccccccc-------ceEEEEeCChhhccccccc-------c-ccccccccccccccc---ccccccc
Confidence            45678999999999876543       3468999999999999873       2 788999998765655   7899998


Q ss_pred             E-----eCCChhchHHHHHhcccCCCEEEEEeCC
Q 026506          187 L-----DLPQPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       187 ~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      +     +.+++..+++++.+.|+|||.+++..+.
T Consensus        97 ~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~  130 (208)
T d1vlma_          97 MVTTICFVDDPERALKEAYRILKKGGYLIVGIVD  130 (208)
T ss_dssp             EESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cccccccccccccchhhhhhcCCCCceEEEEecC
Confidence            6     3467778999999999999999987764

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.52  E-value=8.3e-15  Score=113.98  Aligned_cols=102  Identities=18%  Similarity=0.161  Sum_probs=80.8

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      .++.+|||+|||+|.++..+++.   ..+++++|+|+++++.|+++....+.  ++++..+|+.+..++    +.||+|+
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~~---g~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~~~----~~fD~i~  106 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNIN----RKFDLIT  106 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCS----CCEEEEE
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHh---CCccEeeccchhhhhhccccccccCc--cceeeccchhhhccc----ccccccc
Confidence            34579999999999999998876   25899999999999999999887764  388999999763332    6799988


Q ss_pred             EeC------C---ChhchHHHHHhcccCCCEEEEEeCCHH
Q 026506          187 LDL------P---QPWLAIPSAKKMLKQDGILCSFSPCIE  217 (237)
Q Consensus       187 ~~~------~---~~~~~l~~~~~~L~~gG~l~~~~~~~~  217 (237)
                      +-.      .   +...+++++.+.|+|||.+++-.....
T Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~  146 (246)
T d1y8ca_         107 CCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYY  146 (246)
T ss_dssp             ECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHH
T ss_pred             eeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCCHH
Confidence            621      1   223579999999999999987555443

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=1.9e-14  Score=113.34  Aligned_cols=105  Identities=20%  Similarity=0.252  Sum_probs=84.9

Q ss_pred             CCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       105 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      ...++.+|||+|||+|.++..+++.. +..+++++|+++.+++.|+++.     .+ +.+..+|+.+.++++   +.||+
T Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~giD~s~~~~~~a~~~~-----~~-~~~~~~d~~~l~~~~---~sfD~  150 (268)
T d1p91a_          81 LDDKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY-----PQ-VTFCVASSHRLPFSD---TSMDA  150 (268)
T ss_dssp             SCTTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC-----TT-SEEEECCTTSCSBCT---TCEEE
T ss_pred             cCCCCCEEEEeCCCCcHHHHHHHHHC-CCCEEEEecchHhhhhhhhccc-----cc-ccceeeehhhccCCC---CCEEE
Confidence            35667899999999999999998875 5679999999999999998752     23 888999998766666   78999


Q ss_pred             EEEeCCChhchHHHHHhcccCCCEEEEEeCCHHHHHH
Q 026506          185 IFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQR  221 (237)
Q Consensus       185 v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~  221 (237)
                      |+.....  ..++++.++|||||.+++..|....+.+
T Consensus       151 v~~~~~~--~~~~e~~rvLkpgG~l~~~~p~~~~l~e  185 (268)
T d1p91a_         151 IIRIYAP--CKAEELARVVKPGGWVITATPGPRHLME  185 (268)
T ss_dssp             EEEESCC--CCHHHHHHHEEEEEEEEEEEECTTTTHH
T ss_pred             EeecCCH--HHHHHHHHHhCCCcEEEEEeeCCcchHH
Confidence            9865432  2478999999999999999886554433

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.49  E-value=2.4e-14  Score=107.27  Aligned_cols=108  Identities=14%  Similarity=0.041  Sum_probs=80.9

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC-----------CCcEEEEEcc
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV-----------SSFVTVGVRD  168 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~i~~~~~d  168 (237)
                      ....+.+.|+.+|||+|||+|..+..++++   ..+|+++|+|+.+++.|+++....+.           ...+++..+|
T Consensus        12 ~~~~l~~~~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   88 (201)
T d1pjza_          12 YWSSLNVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD   88 (201)
T ss_dssp             HHHHHCCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred             HHHHcCCCCCCEEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccc
Confidence            456678899999999999999999999987   37999999999999999998754321           1224567777


Q ss_pred             ccCCCCCCCCCCCCCEEEEeCC-------ChhchHHHHHhcccCCCEEEEE
Q 026506          169 IQGQGFPDEFSGLADSIFLDLP-------QPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       169 ~~~~~~~~~~~~~~D~v~~~~~-------~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                      +.......  ...||+|+....       .....++.+.+.|||||.+++.
T Consensus        89 ~~~l~~~~--~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~  137 (201)
T d1pjza_          89 FFALTARD--IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI  137 (201)
T ss_dssp             CSSSTHHH--HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred             cccccccc--ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEE
Confidence            76422211  156899876332       1235789999999999998754

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.47  E-value=3.8e-14  Score=102.11  Aligned_cols=103  Identities=19%  Similarity=0.198  Sum_probs=81.6

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      -.|.+|||+|||+|.+++..+.+  +..+|+++|.++.+++.++++++.++..+++++..+|+..  +......+||+|+
T Consensus        13 ~~g~~vlDl~~GtG~~~iea~~r--ga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~--~l~~~~~~fDiIf   88 (152)
T d2esra1          13 FNGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAER--AIDCLTGRFDLVF   88 (152)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHH--HHHHBCSCEEEEE
T ss_pred             CCCCeEEEcCCccCHHHHHHHHh--Ccceeeeehhchhhhhhhhhhhhhcccccchhhhcccccc--cccccccccceeE
Confidence            46899999999999999877665  4479999999999999999999999998889999999875  1111226899999


Q ss_pred             EeCCChh----chHHHH--HhcccCCCEEEEEe
Q 026506          187 LDLPQPW----LAIPSA--KKMLKQDGILCSFS  213 (237)
Q Consensus       187 ~~~~~~~----~~l~~~--~~~L~~gG~l~~~~  213 (237)
                      +|+|-..    ..++.+  .+.|+|+|.+++-.
T Consensus        89 ~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE~  121 (152)
T d2esra1          89 LDPPYAKETIVATIEALAAKNLLSEQVMVVCET  121 (152)
T ss_dssp             ECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             echhhccchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence            9988332    344444  35689999998654

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.46  E-value=2.5e-14  Score=115.14  Aligned_cols=104  Identities=23%  Similarity=0.155  Sum_probs=83.5

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC-CCCCCCCCCCCE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GFPDEFSGLADS  184 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~~~D~  184 (237)
                      ..+|.+|||++||+|+++++++..   ..+|+++|+|+.+++.|++|++.+|+.+ ++++..|+.+. ........+||+
T Consensus       143 ~~~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~~-~~~i~~d~~~~~~~~~~~~~~fD~  218 (318)
T d1wxxa2         143 RFRGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKEGERFDL  218 (318)
T ss_dssp             GCCEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             HhCCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCCC-cceeeccHHHHhhhhHhhhcCCCE
Confidence            346899999999999999887754   3789999999999999999999999976 89999998641 001111267999


Q ss_pred             EEEeCCCh--------------hchHHHHHhcccCCCEEEEEe
Q 026506          185 IFLDLPQP--------------WLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       185 v~~~~~~~--------------~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      |++|+|..              .+++..+.++|+|||.|+..+
T Consensus       219 Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~s  261 (318)
T d1wxxa2         219 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATAS  261 (318)
T ss_dssp             EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            99999843              246788899999999988544

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.5e-13  Score=104.57  Aligned_cols=122  Identities=16%  Similarity=0.181  Sum_probs=95.8

Q ss_pred             cccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC
Q 026506           92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG  171 (237)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~  171 (237)
                      +.|....++..........+|||+|+|+|+.+..++..++..++++++|.+++..+.|+++++..|..+++++..+|+.+
T Consensus        43 i~~~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e  122 (219)
T d2avda1          43 MTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALE  122 (219)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhh
Confidence            34443333444445566789999999999999999998876789999999999999999999999999999999999864


Q ss_pred             C---CCCCCCCCCCCEEEEeCC--ChhchHHHHHhcccCCCEEEEEe
Q 026506          172 Q---GFPDEFSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       172 ~---~~~~~~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .   .+.....+.||+||+|..  .....++.+.+.|+|||.+++-.
T Consensus       123 ~l~~~~~~~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~Dn  169 (219)
T d2avda1         123 TLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLR  169 (219)
T ss_dssp             HHHHHHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cchhhhhhcccCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEeC
Confidence            1   011111267999999875  33467899999999999999654

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.46  E-value=1.1e-13  Score=106.09  Aligned_cols=98  Identities=17%  Similarity=0.196  Sum_probs=78.5

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      ..+.+|||+|||+|.++..++..   ..+|+++|+|+++++.|+++..     +.+++..+|+.+..+ +   +.||+|+
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~~---g~~v~giD~s~~~i~~a~~~~~-----~~~~~~~~~~~~~~~-~---~~fD~I~   86 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRLK-----DGITYIHSRFEDAQL-P---RRYDNIV   86 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHSC-----SCEEEEESCGGGCCC-S---SCEEEEE
T ss_pred             CCCCcEEEEeCCCcHHHHHHHHc---CCeEEEEeCcHHHhhhhhcccc-----ccccccccccccccc-c---ccccccc
Confidence            45678999999999999888765   2579999999999999988632     348899999875333 2   6899998


Q ss_pred             E-----eCCChhchHHHHH-hcccCCCEEEEEeCCH
Q 026506          187 L-----DLPQPWLAIPSAK-KMLKQDGILCSFSPCI  216 (237)
Q Consensus       187 ~-----~~~~~~~~l~~~~-~~L~~gG~l~~~~~~~  216 (237)
                      +     +.+++...+.++. ++|+|||.+++..|..
T Consensus        87 ~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~  122 (225)
T d2p7ia1          87 LTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNA  122 (225)
T ss_dssp             EESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred             ccceeEecCCHHHHHHHHHHHhcCCCceEEEEeCCc
Confidence            6     3467777899987 7899999999887754

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=7e-13  Score=105.29  Aligned_cols=124  Identities=24%  Similarity=0.315  Sum_probs=95.6

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .....+++.+|++|||+++|+|+-+.+++..+++.+.++++|+++.+++.+++++++.|+.+ +.+...|+.........
T Consensus        85 l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~-~~~~~~d~~~~~~~~~~  163 (293)
T d2b9ea1          85 LPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC-CELAEEDFLAVSPSDPR  163 (293)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCGGGSCTTCGG
T ss_pred             ccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccc-eeeeehhhhhhcccccc
Confidence            45667789999999999999999999999998878899999999999999999999999988 88888888652222111


Q ss_pred             CCCCCEEEEeCCChh-----------------------------chHHHHHhcccCCCEEEEEeCCH---HHHHHHHHH
Q 026506          179 SGLADSIFLDLPQPW-----------------------------LAIPSAKKMLKQDGILCSFSPCI---EQVQRSCES  225 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~-----------------------------~~l~~~~~~L~~gG~l~~~~~~~---~~~~~~~~~  225 (237)
                      .+.||.|++|+|+..                             ..+..+. .++|||+|+ |++|.   ++.+.+.+.
T Consensus       164 ~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lv-YsTCSl~~~ENe~vV~~  240 (293)
T d2b9ea1         164 YHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLV-YSTCSLCQEENEDVVRD  240 (293)
T ss_dssp             GTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEE-EEESCCCGGGTHHHHHH
T ss_pred             cceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEE-EeeccCChhHhHHHHHH
Confidence            257999999987330                             2344455 478999876 88774   334444443

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.44  E-value=1.4e-12  Score=97.08  Aligned_cols=132  Identities=16%  Similarity=0.147  Sum_probs=102.9

Q ss_pred             cccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC
Q 026506           94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG  173 (237)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~  173 (237)
                      |-....++..+.+.++..++|++||+|+.+..+++.. +.++++++|.++++++.|+++++..+  .++.+..+++.+..
T Consensus         9 pVll~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~-~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~   85 (192)
T d1m6ya2           9 PVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREAD   85 (192)
T ss_dssp             CTTHHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHH
T ss_pred             chHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcC-CCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHH
Confidence            3334447888899999999999999999999999997 56899999999999999999987655  55999999886511


Q ss_pred             --CCCCCCCCCCEEEEeCCCh--------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh
Q 026506          174 --FPDEFSGLADSIFLDLPQP--------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL  228 (237)
Q Consensus       174 --~~~~~~~~~D~v~~~~~~~--------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~  228 (237)
                        ......+.+|.|+.|.+..              ...+..+.+.|+|||++++++-.....+.+...+++
T Consensus        86 ~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~f~~  156 (192)
T d1m6ya2          86 FLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFRN  156 (192)
T ss_dssp             HHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHHHhh
Confidence              0111126799999987631              257889999999999999888776555555555554

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.44  E-value=3.3e-13  Score=108.07  Aligned_cols=113  Identities=28%  Similarity=0.407  Sum_probs=94.7

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .....+++++|++|||+++|+|+-+.+++..+...+.++++|.++.+++.+++++.+.+..+ +.....|........  
T Consensus       107 l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~-i~~~~~d~~~~~~~~--  183 (313)
T d1ixka_         107 YPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN-VILFHSSSLHIGELN--  183 (313)
T ss_dssp             HHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS-EEEESSCGGGGGGGC--
T ss_pred             chhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhc-ccccccccccccccc--
Confidence            45667789999999999999999999999998777899999999999999999999999877 767777765422222  


Q ss_pred             CCCCCEEEEeCCCh---------------------------hchHHHHHhcccCCCEEEEEeCCH
Q 026506          179 SGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       179 ~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                       ..||.|++|+|+.                           .+.+.++.+.|||||+++ |++|.
T Consensus       184 -~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lV-YsTCS  246 (313)
T d1ixka_         184 -VEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILV-YSTCS  246 (313)
T ss_dssp             -CCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEE-EEESC
T ss_pred             -ccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEE-Eeecc
Confidence             6799999998844                           146889999999999987 87774

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.43  E-value=2.6e-13  Score=108.81  Aligned_cols=107  Identities=16%  Similarity=0.166  Sum_probs=84.6

Q ss_pred             CCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccCC-CCCCCCCCCC
Q 026506          105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS-SFVTVGVRDIQGQ-GFPDEFSGLA  182 (237)
Q Consensus       105 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~-~~~~~~~~~~  182 (237)
                      ...+|.+|||++||+|+++++++..  +..+|+++|+++.+++.+++|++.+++. .+++++.+|+.+. ......+..|
T Consensus       141 ~~~~g~~VLdlf~~~G~~sl~aa~~--ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~f  218 (317)
T d2b78a2         141 GSAAGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTY  218 (317)
T ss_dssp             TTTBTCEEEEETCTTTHHHHHHHHT--TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred             HhhCCCceeecCCCCcHHHHHHHhC--CCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCC
Confidence            3567899999999999999776543  5578999999999999999999999874 4589999998741 0001112579


Q ss_pred             CEEEEeCCCh--------------hchHHHHHhcccCCCEEEEEe
Q 026506          183 DSIFLDLPQP--------------WLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       183 D~v~~~~~~~--------------~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      |+|++|+|..              .++++.+.++|+|||.|++.+
T Consensus       219 D~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~s  263 (317)
T d2b78a2         219 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST  263 (317)
T ss_dssp             EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            9999999842              247888899999999999654

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.42  E-value=1.6e-13  Score=104.82  Aligned_cols=110  Identities=16%  Similarity=0.172  Sum_probs=91.8

Q ss_pred             hcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC-----C
Q 026506          103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-----E  177 (237)
Q Consensus       103 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-----~  177 (237)
                      .+......+|||+|++.|+.++.++..++.+++++.+|.+++..+.|++++++.|..++++++.+|+.+ .++.     .
T Consensus        54 L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~-~L~~l~~~~~  132 (227)
T d1susa1          54 LLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALP-VLDEMIKDEK  132 (227)
T ss_dssp             HHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHH-HHHHHHHCGG
T ss_pred             HHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHH-HHHHHHhccc
Confidence            344556789999999999999999999877899999999999999999999999998899999999874 1111     0


Q ss_pred             CCCCCCEEEEeCC--ChhchHHHHHhcccCCCEEEEEe
Q 026506          178 FSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       178 ~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ..+.||+||+|..  .....++.+.+.|+|||.+++-.
T Consensus       133 ~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~DN  170 (227)
T d1susa1         133 NHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDN  170 (227)
T ss_dssp             GTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEET
T ss_pred             cCCceeEEEeccchhhhHHHHHHHHhhcCCCcEEEEcc
Confidence            1257999999875  34468999999999999998653

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=3.4e-13  Score=106.69  Aligned_cols=131  Identities=21%  Similarity=0.263  Sum_probs=98.5

Q ss_pred             cccccccHH--HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q 026506           90 QILYIADIS--FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR  167 (237)
Q Consensus        90 ~~~~~~~~~--~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~  167 (237)
                      ..++.++.+  ..+..+++.++++|||+++|+|+-+.+++... ..+.++++|.++.+++..++++++.|+.+ +.....
T Consensus        82 G~~~vQD~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~-~~~~i~a~d~~~~R~~~l~~~~~r~g~~~-~~~~~~  159 (284)
T d1sqga2          82 GWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLGMKA-TVKQGD  159 (284)
T ss_dssp             TSEEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHHTTCCC-EEEECC
T ss_pred             cEEEeccccccccccccCccccceeEeccCccccchhhhhhhh-hhhhhhhhhcchhhhhhHhhhhhcccccc-eeeecc
Confidence            334444444  35667899999999999999999999999864 45899999999999999999999999876 555544


Q ss_pred             cccCCCCCCCCCCCCCEEEEeCCCh---------------------------hchHHHHHhcccCCCEEEEEeCCH---H
Q 026506          168 DIQGQGFPDEFSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPCI---E  217 (237)
Q Consensus       168 d~~~~~~~~~~~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~gG~l~~~~~~~---~  217 (237)
                      |.......  ..+.||.|++|+|+.                           .+.|.++.+.|||||+|+ |++|.   +
T Consensus       160 ~~~~~~~~--~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lv-YsTCS~~~~  236 (284)
T d1sqga2         160 GRYPSQWC--GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLV-YATCSVLPE  236 (284)
T ss_dssp             TTCTHHHH--TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEE-EEESCCCGG
T ss_pred             ccccchhc--ccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEE-EeeecCchh
Confidence            44321111  125799999999854                           146888999999999988 87775   3


Q ss_pred             HHHHHHHH
Q 026506          218 QVQRSCES  225 (237)
Q Consensus       218 ~~~~~~~~  225 (237)
                      ..+...+.
T Consensus       237 ENE~vv~~  244 (284)
T d1sqga2         237 ENSLQIKA  244 (284)
T ss_dssp             GTHHHHHH
T ss_pred             hCHHHHHH
Confidence            44545443

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=4.5e-13  Score=108.38  Aligned_cols=101  Identities=22%  Similarity=0.244  Sum_probs=80.9

Q ss_pred             cCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCC
Q 026506          104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLAD  183 (237)
Q Consensus       104 ~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D  183 (237)
                      ....++.+|||+|||+|.++..++++  +..+|+++|.++ +++.|+++...++..+++.+..+|+.+..++.   ..||
T Consensus        34 ~~~~~~~~VLDlGcGtG~ls~~aa~~--Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~---~~~D  107 (328)
T d1g6q1_          34 KDLFKDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPF---PKVD  107 (328)
T ss_dssp             HHHHTTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSS---SCEE
T ss_pred             cccCCcCEEEEeCCCCCHHHHHHHHh--CCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcc---ccee
Confidence            34457899999999999999776664  447999999986 67889999888898888999999998766665   7899


Q ss_pred             EEEEeCC--------ChhchHHHHHhcccCCCEEE
Q 026506          184 SIFLDLP--------QPWLAIPSAKKMLKQDGILC  210 (237)
Q Consensus       184 ~v~~~~~--------~~~~~l~~~~~~L~~gG~l~  210 (237)
                      +|+....        ....++....+.|||||+++
T Consensus       108 ~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         108 IIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             EEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            9987543        22345777779999999985

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=5.7e-13  Score=102.34  Aligned_cols=110  Identities=12%  Similarity=-0.059  Sum_probs=82.2

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC----------------CCCcE
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG----------------VSSFV  162 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----------------~~~~i  162 (237)
                      .+...+...++.+|||+|||.|..+..+++.   ..+|+++|+|+.+++.|+++.....                ....+
T Consensus        36 ~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~---G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  112 (229)
T d2bzga1          36 HLDTFLKGKSGLRVFFPLCGKAVEMKWFADR---GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNI  112 (229)
T ss_dssp             HHHHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSE
T ss_pred             HHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcE
Confidence            3445667889999999999999999999876   3689999999999999988754211                11348


Q ss_pred             EEEEccccCCCCCCCCCCCCCEEEEeC-------CChhchHHHHHhcccCCCEEEEEe
Q 026506          163 TVGVRDIQGQGFPDEFSGLADSIFLDL-------PQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       163 ~~~~~d~~~~~~~~~~~~~~D~v~~~~-------~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ++.++|+.+.....  .+.||+|+...       .....+++++.++|||||++++..
T Consensus       113 ~~~~~d~~~l~~~~--~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~  168 (229)
T d2bzga1         113 SLYCCSIFDLPRTN--IGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCV  168 (229)
T ss_dssp             EEEESCGGGGGGSC--CCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEEcchhhccccc--cCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEE
Confidence            88999987632222  26799987432       223458899999999999876553

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.8e-12  Score=98.74  Aligned_cols=127  Identities=13%  Similarity=0.033  Sum_probs=97.3

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC---CCCCCCCCCCE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG---FPDEFSGLADS  184 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~~~~D~  184 (237)
                      +..++||+|||+|..+..++... +..+++++|+++++++.|++|++.+++.+++.+...+.....   +.....+.||+
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~-~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~  139 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF  139 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             ccceEEEeCCCchHHHHHHHHhC-CCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence            44699999999999999999887 568999999999999999999999999988998876654311   11112367999


Q ss_pred             EEEeCCCh----------------------------------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHH
Q 026506          185 IFLDLPQP----------------------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCE  224 (237)
Q Consensus       185 v~~~~~~~----------------------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~  224 (237)
                      |++|+|-.                                        ...+++....++..|.+.......++++.+.+
T Consensus       140 ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~~i~~  219 (250)
T d2h00a1         140 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKE  219 (250)
T ss_dssp             EEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHH
T ss_pred             EEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhHHHHHH
Confidence            99988721                                        01245556778888988766665677888888


Q ss_pred             HHHh-cCccccc
Q 026506          225 SLRL-NFTGKES  235 (237)
Q Consensus       225 ~l~~-~f~~v~~  235 (237)
                      .|++ +|.++++
T Consensus       220 ~L~~~g~~~i~~  231 (250)
T d2h00a1         220 ELRIQGVPKVTY  231 (250)
T ss_dssp             HHHHTTCSEEEE
T ss_pred             HHHHcCCCeEEE
Confidence            8888 7876654

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.39  E-value=5.3e-13  Score=109.85  Aligned_cols=118  Identities=13%  Similarity=0.085  Sum_probs=84.2

Q ss_pred             cccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC-------CC-CcEEE-
Q 026506           94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG-------VS-SFVTV-  164 (237)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-------~~-~~i~~-  164 (237)
                      +..+..+++.+++++++++||+|||+|..+..+|...+ .++++|+|+++.+++.|+++.+..+       .. ....+ 
T Consensus       202 ~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g-~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~  280 (406)
T d1u2za_         202 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFS  280 (406)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEE
T ss_pred             HHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceee
Confidence            44455688999999999999999999999999998874 4689999999999999998876432       11 11333 


Q ss_pred             EEccccCCCCCCCCCCCCCEEEEeC----CChhchHHHHHhcccCCCEEEEE
Q 026506          165 GVRDIQGQGFPDEFSGLADSIFLDL----PQPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       165 ~~~d~~~~~~~~~~~~~~D~v~~~~----~~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                      ..+++............+|+|+++.    ++....+.++.+.|||||+++..
T Consensus       281 ~~~~f~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         281 LKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISL  332 (406)
T ss_dssp             ESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             eeechhhccccccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEe
Confidence            2344432111111113578988753    23346789999999999999854

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=1.4e-13  Score=104.50  Aligned_cols=128  Identities=19%  Similarity=0.167  Sum_probs=94.2

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC---
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD---  176 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~---  176 (237)
                      +..........+|||+|||.|..++.++..++..++++++|.+++..+.|+++++..|+.++++++.+|..+ .++.   
T Consensus        48 L~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e-~l~~l~~  126 (214)
T d2cl5a1          48 MDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQD-LIPQLKK  126 (214)
T ss_dssp             HHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH-HGGGHHH
T ss_pred             HHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccc-cccchhh
Confidence            333444455679999999999999999988776789999999999999999999999998889999999874 1111   


Q ss_pred             -CCCCCCCEEEEeCCChh----chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh
Q 026506          177 -EFSGLADSIFLDLPQPW----LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL  228 (237)
Q Consensus       177 -~~~~~~D~v~~~~~~~~----~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~  228 (237)
                       .....||+||+|.....    ..+.+..+.|+|||.+++-.......+...+.+|+
T Consensus       127 ~~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~~~~vr~  183 (214)
T d2cl5a1         127 KYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRG  183 (214)
T ss_dssp             HSCCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEESCCCCCCCHHHHHHHHH
T ss_pred             cccccccceeeecccccccccHHHHHHHhCccCCCcEEEEeCcCCCCChHHHHHHhc
Confidence             01157999999864322    24667788999999887432211122345555665

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=8.9e-13  Score=106.47  Aligned_cols=115  Identities=17%  Similarity=0.179  Sum_probs=87.7

Q ss_pred             HHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-------CC-CCcEEEEEcc
Q 026506           97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-------GV-SSFVTVGVRD  168 (237)
Q Consensus        97 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-------~~-~~~i~~~~~d  168 (237)
                      ...+++.++++++++|||+|||+|.++..++... +..+++|+|+++.+++.|+++.+..       |. ...+++.++|
T Consensus       140 ~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~-~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd  218 (328)
T d1nw3a_         140 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD  218 (328)
T ss_dssp             HHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHC-CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred             HHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence            3457888999999999999999999999998875 4578999999999999998765432       22 2349999999


Q ss_pred             ccCCCCCCCCCCCCCEEEEeCC----ChhchHHHHHhcccCCCEEEEEe
Q 026506          169 IQGQGFPDEFSGLADSIFLDLP----QPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       169 ~~~~~~~~~~~~~~D~v~~~~~----~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +.+.++.+.. ..+|+|+++.-    +....+.++.+.|||||+++...
T Consensus       219 ~~~~~~~~~~-~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         219 FLSEEWRERI-ANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             TTSHHHHHHH-HHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             cccccccccc-CcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEec
Confidence            9764333210 13688887543    33367899999999999998654

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=1e-12  Score=105.72  Aligned_cols=99  Identities=20%  Similarity=0.234  Sum_probs=79.3

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..++.+|||+|||+|.++..+++.  ++.+|+++|.++. ...++++.+.++..+++.+..+|+.+..++.   ..+|+|
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~--Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~---~~~D~i  104 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPV---EKVDII  104 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSS---SCEEEE
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHh--CCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHccccc---ceeEEE
Confidence            457899999999999998877764  3468999999875 5777778888888888999999998755554   789999


Q ss_pred             EEeCC--------ChhchHHHHHhcccCCCEEE
Q 026506          186 FLDLP--------QPWLAIPSAKKMLKQDGILC  210 (237)
Q Consensus       186 ~~~~~--------~~~~~l~~~~~~L~~gG~l~  210 (237)
                      +....        ....++....+.|||||+++
T Consensus       105 vs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         105 ISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             EECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence            87543        22346777889999999986

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.38  E-value=2.1e-12  Score=100.86  Aligned_cols=117  Identities=21%  Similarity=0.152  Sum_probs=87.8

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      .+..+++|+|||+|..++.++..  +..+|+++|+|+.+++.|++|++.+++.+++.+...|+.+ .++. ..+.||+|+
T Consensus       109 ~~~~~vld~g~GsG~i~~~la~~--~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~-~~~~-~~~~fDlIV  184 (271)
T d1nv8a_         109 YGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE-PFKE-KFASIEMIL  184 (271)
T ss_dssp             HTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTG-GGGG-GTTTCCEEE
T ss_pred             ccccEEEEeeeeeehhhhhhhhc--ccceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccc-cccc-ccCcccEEE
Confidence            34568999999999999888754  5689999999999999999999999998889999999874 2221 126799999


Q ss_pred             EeCCC--------------hh----------chH-HHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh
Q 026506          187 LDLPQ--------------PW----------LAI-PSAKKMLKQDGILCSFSPCIEQVQRSCESLRL  228 (237)
Q Consensus       187 ~~~~~--------------~~----------~~l-~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~  228 (237)
                      .|+|-              |.          ..+ +-+.+.|+|||.+++-.. ..|.+.+.+.+.+
T Consensus       185 sNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig-~~Q~~~v~~l~~~  250 (271)
T d1nv8a_         185 SNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG-EDQVEELKKIVSD  250 (271)
T ss_dssp             ECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC-TTCHHHHTTTSTT
T ss_pred             EcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEEC-HHHHHHHHHHHHh
Confidence            99871              11          112 224577999999886544 3556666555555

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.38  E-value=1.8e-13  Score=100.41  Aligned_cols=105  Identities=13%  Similarity=0.072  Sum_probs=75.8

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ...|.+|||+|||+|.+++..+..  + .+++++|.++.+++.+++|++.+++.+++.....|... .........||+|
T Consensus        39 ~~~g~~vLDl~~G~G~~~i~a~~~--g-a~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~-~~~~~~~~~fD~I  114 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVGLEAASE--G-WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFL-PEAKAQGERFTVA  114 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHT--T-CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHH-HHHHHTTCCEEEE
T ss_pred             ccCCCeEEEeccccchhhhhhhhc--c-chhhhcccCHHHHhhhhHHHHhhccccceeeeehhccc-ccccccCCcccee
Confidence            467889999999999999876665  3 57889999999999999999999987655554444321 1111112579999


Q ss_pred             EEeCCC---hhchHHHHH--hcccCCCEEEEEeC
Q 026506          186 FLDLPQ---PWLAIPSAK--KMLKQDGILCSFSP  214 (237)
Q Consensus       186 ~~~~~~---~~~~l~~~~--~~L~~gG~l~~~~~  214 (237)
                      |+|+|-   ..+.+..+.  ..|+|||.+++-.+
T Consensus       115 f~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie~~  148 (171)
T d1ws6a1         115 FMAPPYAMDLAALFGELLASGLVEAGGLYVLQHP  148 (171)
T ss_dssp             EECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred             EEccccccCHHHHHHHHHHcCCcCCCeEEEEEec
Confidence            999982   223444443  47899999886543

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.8e-12  Score=104.08  Aligned_cols=104  Identities=19%  Similarity=0.157  Sum_probs=79.0

Q ss_pred             HHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506          101 IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG  180 (237)
Q Consensus       101 ~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  180 (237)
                      .......++.+|||+|||+|.+++.+++.  +..+|+++|.++.+.. +++....++..+++.+..+|+.+...+.   .
T Consensus        28 ~~~~~~~~~~~VLDiGcG~G~lsl~aa~~--Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~~~~---~  101 (311)
T d2fyta1          28 YQNPHIFKDKVVLDVGCGTGILSMFAAKA--GAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHLPV---E  101 (311)
T ss_dssp             HHCGGGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSCCSC---S
T ss_pred             HhccccCCcCEEEEECCCCCHHHHHHHHc--CCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhcCcc---c
Confidence            33445667899999999999999877765  3479999999998754 5666666777777999999998755554   6


Q ss_pred             CCCEEEEeCCCh--------hchHHHHHhcccCCCEEE
Q 026506          181 LADSIFLDLPQP--------WLAIPSAKKMLKQDGILC  210 (237)
Q Consensus       181 ~~D~v~~~~~~~--------~~~l~~~~~~L~~gG~l~  210 (237)
                      .||+|+.+....        ..++....+.|+|||+++
T Consensus       102 ~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1         102 KVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             CEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             cceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence            899998754322        234555678899999986

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=7.8e-13  Score=105.24  Aligned_cols=113  Identities=15%  Similarity=0.095  Sum_probs=81.3

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC---cEEEEEccccCC--C
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS---FVTVGVRDIQGQ--G  173 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~---~i~~~~~d~~~~--~  173 (237)
                      .+...+..+++.+|||+|||+|..+..+++.   ..+|+++|+|+++++.|+++....+...   ...+...|+...  .
T Consensus        47 ~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~---g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (292)
T d1xvaa_          47 WLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD  123 (292)
T ss_dssp             HHHHHHHHTTCCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH
T ss_pred             HHHHHhhhcCCCEEEEecCCCcHHHHHHHHc---CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccc
Confidence            3555566667889999999999999999876   3689999999999999999877655321   134455555431  1


Q ss_pred             CCCCCCCCCCEEEEeC------CC-------hhchHHHHHhcccCCCEEEEEeCCH
Q 026506          174 FPDEFSGLADSIFLDL------PQ-------PWLAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       174 ~~~~~~~~~D~v~~~~------~~-------~~~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                      ++.  ...||.|++-.      +.       ...+++++.+.|||||++++-....
T Consensus       124 ~~~--~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  177 (292)
T d1xvaa_         124 VPA--GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY  177 (292)
T ss_dssp             SCC--TTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             cCC--CCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecCH
Confidence            221  16799987521      22       1248999999999999999766544

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.36  E-value=7.9e-13  Score=97.81  Aligned_cols=107  Identities=15%  Similarity=0.111  Sum_probs=83.1

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC-CCCCCCCCCCCE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GFPDEFSGLADS  184 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~~~D~  184 (237)
                      ...+.+|||++||+|.+++..+.+  ++.+|+.+|.++.+++.+++|++..+..+++++...|+... .........||+
T Consensus        39 ~~~~~~vLDlfaGsG~~g~ea~sr--Ga~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDl  116 (182)
T d2fhpa1          39 YFDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDL  116 (182)
T ss_dssp             CCSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             hcCCCEEEEcccccccccceeeec--chhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcce
Confidence            357899999999999999988776  45799999999999999999999888877799999998641 000011257999


Q ss_pred             EEEeCCCh----hchHHHHH--hcccCCCEEEEEeC
Q 026506          185 IFLDLPQP----WLAIPSAK--KMLKQDGILCSFSP  214 (237)
Q Consensus       185 v~~~~~~~----~~~l~~~~--~~L~~gG~l~~~~~  214 (237)
                      ||+|+|-.    ...++.+.  ..|+++|.+++-.+
T Consensus       117 IflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E~~  152 (182)
T d2fhpa1         117 VLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETD  152 (182)
T ss_dssp             EEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             EEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence            99999832    34566654  36899998886543

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=7e-12  Score=98.94  Aligned_cols=107  Identities=11%  Similarity=0.025  Sum_probs=76.8

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHh---CC--CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE--EEccccC------C
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAV---AP--TGHVYTFDFHEQRAASAREDFERTGVSSFVTV--GVRDIQG------Q  172 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~---~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~--~~~d~~~------~  172 (237)
                      .++..+|||+|||+|.++..++..+   .+  ...++++|+|+.+++.+++++........+.+  ...++.+      .
T Consensus        38 ~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (280)
T d1jqea_          38 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLE  117 (280)
T ss_dssp             TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTT
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcc
Confidence            4555689999999999988877653   11  24689999999999999998765432222443  3333321      1


Q ss_pred             CCCCCCCCCCCEEEE-----eCCChhchHHHHHhcccCCCEEEEEeCC
Q 026506          173 GFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       173 ~~~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      ..+.   +.||+|++     ..+++..+++++.+.|+|||.+++..+.
T Consensus       118 ~~~~---~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~  162 (280)
T d1jqea_         118 KKEL---QKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVS  162 (280)
T ss_dssp             SSSC---CCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             cCCC---CceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEec
Confidence            2233   78999986     4567778999999999999998877543

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=2.2e-12  Score=95.53  Aligned_cols=102  Identities=13%  Similarity=0.115  Sum_probs=79.5

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL  187 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~  187 (237)
                      .+.+|||++||+|.+++..+.+  +..+|+.+|.++.+++.+++|++..+..+ ..+...|+..  +.......||+||+
T Consensus        43 ~~~~vLDlfaGsG~~giealsr--Ga~~v~~VE~~~~a~~~~k~N~~~~~~~~-~~ii~~d~~~--~l~~~~~~fDlIf~  117 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSR--YAAGATLIEMDRAVSQQLIKNLATLKAGN-ARVVNSNAMS--FLAQKGTPHNIVFV  117 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCS-EEEECSCHHH--HHSSCCCCEEEEEE
T ss_pred             chhhhhhhhccccceeeeEEec--CcceeEEEEEeechhhHHHHHHhhccccc-eeeeeecccc--cccccccccCEEEE
Confidence            5789999999999999887776  45799999999999999999999888766 8889999875  21112267999999


Q ss_pred             eCCChh----chHHHHH--hcccCCCEEEEEeC
Q 026506          188 DLPQPW----LAIPSAK--KMLKQDGILCSFSP  214 (237)
Q Consensus       188 ~~~~~~----~~l~~~~--~~L~~gG~l~~~~~  214 (237)
                      |+|-..    ..+..+.  ..|+++|.+++...
T Consensus       118 DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE~~  150 (183)
T d2fpoa1         118 DPPFRRGLLEETINLLEDNGWLADEALIYVESE  150 (183)
T ss_dssp             CCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             cCccccchHHHHHHHHHHCCCCCCCeEEEEEec
Confidence            998332    3444443  35899998886543

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.31  E-value=2.3e-12  Score=102.20  Aligned_cols=104  Identities=16%  Similarity=0.077  Sum_probs=81.0

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEccccCCCCC--CCCCCCC
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS-FVTVGVRDIQGQGFP--DEFSGLA  182 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~~--~~~~~~~  182 (237)
                      ...+.+|||++||+|.++++++..  + ++|+++|.|+.+++.|++|++.+++.+ +++++.+|+.+. +.  ...+..|
T Consensus       130 ~~~~~rVLdlf~~tG~~sl~aa~~--G-A~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~-l~~~~~~~~~f  205 (309)
T d2igta1         130 ADRPLKVLNLFGYTGVASLVAAAA--G-AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKF-IQREERRGSTY  205 (309)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHT--T-CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHH-HHHHHHHTCCB
T ss_pred             ccCCCeEEEecCCCcHHHHHHHhC--C-CeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHh-HHHHhhcCCCC
Confidence            456889999999999999887754  3 589999999999999999999998764 589999999751 11  0112679


Q ss_pred             CEEEEeCCCh---------------hchHHHHHhcccCCCEEEEEe
Q 026506          183 DSIFLDLPQP---------------WLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       183 D~v~~~~~~~---------------~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      |+|++|+|..               ...++.+..+|+|||.+++..
T Consensus       206 D~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t  251 (309)
T d2igta1         206 DIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT  251 (309)
T ss_dssp             SEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             CEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence            9999999832               134567788999999766554

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.31  E-value=3.4e-11  Score=90.25  Aligned_cols=112  Identities=18%  Similarity=0.193  Sum_probs=76.9

Q ss_pred             hcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCC
Q 026506          103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA  182 (237)
Q Consensus       103 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  182 (237)
                      ..+.-.|.+|||+|||+|.+++.++..  +..+|+++|+++.+++.+++|++.++.  ..++...|+.+  +.    .+|
T Consensus        41 ~~~dl~g~~vLDlg~GtG~l~i~a~~~--g~~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~~~~d~~~--~~----~~f  110 (201)
T d1wy7a1          41 SLGDIEGKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSE--FN----SRV  110 (201)
T ss_dssp             HTTSSTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGG--CC----CCC
T ss_pred             hcCCCCCCEEEECcCcchHHHHHHHHc--CCCEEEEEcCcHHHHHHHHHHHHHcCC--CceEEECchhh--hC----CcC
Confidence            344456899999999999999876654  446999999999999999999988774  37888888864  33    679


Q ss_pred             CEEEEeCCChh----chHHHHHhcccCCCEEEEEeCCHHHHHHHHH
Q 026506          183 DSIFLDLPQPW----LAIPSAKKMLKQDGILCSFSPCIEQVQRSCE  224 (237)
Q Consensus       183 D~v~~~~~~~~----~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~  224 (237)
                      |+|+.|+|-..    .-...+...+.+++.++..-..........+
T Consensus       111 D~Vi~nPP~~~~~~~~d~~~l~~~~~~~~~v~~ih~~~~~~~~~i~  156 (201)
T d1wy7a1         111 DIVIMNPPFGSQRKHADRPFLLKAFEISDVVYSIHLAKPEVRRFIE  156 (201)
T ss_dssp             SEEEECCCCSSSSTTTTHHHHHHHHHHCSEEEEEEECCHHHHHHHH
T ss_pred             cEEEEcCccccccccccHHHHHHHHhhcccchhcccchHHHHHHHH
Confidence            99999998321    1122233344455555544333333344333

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.27  E-value=7.7e-12  Score=98.75  Aligned_cols=129  Identities=16%  Similarity=0.146  Sum_probs=96.1

Q ss_pred             cCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEEEccccCCCCCCCCCC
Q 026506          104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG---VSSFVTVGVRDIQGQGFPDEFSG  180 (237)
Q Consensus       104 ~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~~  180 (237)
                      ++.. ..+||.+|.|.|..+..++++. +..+++++|+++..++.+++.+....   -+.+++++.+|+..  +-.....
T Consensus        86 ~~~~-pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~--~l~~~~~  161 (295)
T d1inla_          86 LHPN-PKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAE--YVRKFKN  161 (295)
T ss_dssp             HSSS-CCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH--HGGGCSS
T ss_pred             hCCC-CceEEEecCCchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHH--HHhcCCC
Confidence            3444 4799999999999998888763 45789999999999999999765421   13569999999975  2222236


Q ss_pred             CCCEEEEeCCCh----------hchHHHHHhcccCCCEEEEEeCC----HHHHHHHHHHHHhcCcccccc
Q 026506          181 LADSIFLDLPQP----------WLAIPSAKKMLKQDGILCSFSPC----IEQVQRSCESLRLNFTGKESC  236 (237)
Q Consensus       181 ~~D~v~~~~~~~----------~~~l~~~~~~L~~gG~l~~~~~~----~~~~~~~~~~l~~~f~~v~~~  236 (237)
                      .||+|++|..++          .++++.+.+.|+|||++++.+.+    ......+.+.+++.|..+..+
T Consensus       162 ~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~vF~~v~~y  231 (295)
T d1inla_         162 EFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVY  231 (295)
T ss_dssp             CEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEE
T ss_pred             CCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhhcceeEEE
Confidence            899999987543          25789999999999999987654    344566677777778776643

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.1e-12  Score=102.27  Aligned_cols=128  Identities=14%  Similarity=0.051  Sum_probs=84.5

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc------------------------
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSF------------------------  161 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~------------------------  161 (237)
                      ..++.+|||+|||+|.++..++..  ...+|+++|+|+.+++.|+++++..+....                        
T Consensus        49 ~~~g~~vLDlGcG~G~~~~~~~~~--~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (257)
T d2a14a1          49 GLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK  126 (257)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             CCCCCEEEEECCCCCHhHHHHhcc--ccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHH
Confidence            456889999999999887665544  235799999999999999998875442210                        


Q ss_pred             -----EEEEEccccCCCC-CCCCCCCCCEEEEeC-----C----ChhchHHHHHhcccCCCEEEEEeCCH----------
Q 026506          162 -----VTVGVRDIQGQGF-PDEFSGLADSIFLDL-----P----QPWLAIPSAKKMLKQDGILCSFSPCI----------  216 (237)
Q Consensus       162 -----i~~~~~d~~~~~~-~~~~~~~~D~v~~~~-----~----~~~~~l~~~~~~L~~gG~l~~~~~~~----------  216 (237)
                           ......+...... .....+.||+|+...     +    +...+++++.+.|||||.+++..+..          
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~  206 (257)
T d2a14a1         127 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKRE  206 (257)
T ss_dssp             HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEE
T ss_pred             HhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceecccc
Confidence                 1122222221111 111226899998632     2    23357899999999999998765322          


Q ss_pred             -----HHHHHHHHHHHh-cCccccc
Q 026506          217 -----EQVQRSCESLRL-NFTGKES  235 (237)
Q Consensus       217 -----~~~~~~~~~l~~-~f~~v~~  235 (237)
                           -+.+.+.+.+++ ||..+++
T Consensus       207 ~~~~~~~~~~~~~~l~~aGf~v~~~  231 (257)
T d2a14a1         207 FSCVALEKGEVEQAVLDAGFDIEQL  231 (257)
T ss_dssp             EECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred             ccccCCCHHHHHHHHHHCCCEEEEE
Confidence                 135777778888 8875543

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=5.7e-11  Score=96.90  Aligned_cols=127  Identities=17%  Similarity=0.189  Sum_probs=92.7

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE  177 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~  177 (237)
                      .+++.+++.++++|||+.||+|.+++.+++.   ..+|+++|.++++++.|++|++.+++.+ +.+..+|..+.. ....
T Consensus       203 ~v~~~~~~~~~~~vlDLycG~G~fsl~La~~---~~~V~gvE~~~~ai~~A~~na~~n~i~n-~~~~~~~~~~~~~~~~~  278 (358)
T d1uwva2         203 RALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQN-VTFYHENLEEDVTKQPW  278 (358)
T ss_dssp             HHHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCTTSCCSSSGG
T ss_pred             HHHHhhccCCCceEEEecccccccchhcccc---ccEEEeccCcHHHHHHHHHhHHhccccc-ceeeecchhhhhhhhhh
Confidence            3566778889999999999999999998876   3799999999999999999999999988 999999887521 1111


Q ss_pred             CCCCCCEEEEeCCChh--chHHHHHhcccCCCEEEEEeCC-HHHHHHHHHHHHh-cCcc
Q 026506          178 FSGLADSIFLDLPQPW--LAIPSAKKMLKQDGILCSFSPC-IEQVQRSCESLRL-NFTG  232 (237)
Q Consensus       178 ~~~~~D~v~~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~-~~~~~~~~~~l~~-~f~~  232 (237)
                      ....+|+|++|+|...  +.++.+.+. +|.- ++ |..| ..++.+-++.|.+ +|.-
T Consensus       279 ~~~~~d~vilDPPR~G~~~~~~~l~~~-~~~~-iv-YVSCnp~TlaRDl~~l~~~gy~l  334 (358)
T d1uwva2         279 AKNGFDKVLLDPARAGAAGVMQQIIKL-EPIR-IV-YVSCNPATLARDSEALLKAGYTI  334 (358)
T ss_dssp             GTTCCSEEEECCCTTCCHHHHHHHHHH-CCSE-EE-EEESCHHHHHHHHHHHHHTTCEE
T ss_pred             hhccCceEEeCCCCccHHHHHHHHHHc-CCCE-EE-EEeCCHHHHHHHHHHHHHCCCeE
Confidence            2256999999998553  344444432 4443 33 4444 3556666666655 7753

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.19  E-value=2e-11  Score=97.40  Aligned_cols=125  Identities=15%  Similarity=0.159  Sum_probs=91.9

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--C--CCCcEEEEEccccCCCCCCCCCCCCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT--G--VSSFVTVGVRDIQGQGFPDEFSGLAD  183 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~--~~~~i~~~~~d~~~~~~~~~~~~~~D  183 (237)
                      ...+||.+|.|.|..+..+++.. +..+++++|+++..++.+++.+...  +  -+.+++++.+|+.+  +-.....+||
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~--~l~~~~~~yD  153 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARA--YLERTEERYD  153 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHH--HHHHCCCCEE
T ss_pred             CcceEEEeCCCchHHHHHHHhcC-CcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHH--HhhhcCCccc
Confidence            45799999999999998887763 5579999999999999999987532  1  23569999999986  2111226799


Q ss_pred             EEEEeCCCh------------hchHHHHHhcccCCCEEEEEeCC----HHH-HHHHHHHHHhcCccccc
Q 026506          184 SIFLDLPQP------------WLAIPSAKKMLKQDGILCSFSPC----IEQ-VQRSCESLRLNFTGKES  235 (237)
Q Consensus       184 ~v~~~~~~~------------~~~l~~~~~~L~~gG~l~~~~~~----~~~-~~~~~~~l~~~f~~v~~  235 (237)
                      +|++|..++            .++++.+.+.|+|||++++.+.+    ... ...+.+.+++.|..|..
T Consensus       154 vIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~~V~~  222 (312)
T d1uira_         154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRS  222 (312)
T ss_dssp             EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEE
T ss_pred             EEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCceEEE
Confidence            999987543            25789999999999999876422    122 23444567767887765

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=7e-12  Score=98.12  Aligned_cols=128  Identities=14%  Similarity=0.073  Sum_probs=83.5

Q ss_pred             CCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-------------------------
Q 026506          105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS-------------------------  159 (237)
Q Consensus       105 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-------------------------  159 (237)
                      +...|.++||+|||+|.++...+...  ..+|+++|+++.+++.+++++......                         
T Consensus        51 g~~~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  128 (263)
T d2g72a1          51 GEVSGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKER  128 (263)
T ss_dssp             SCSCCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHH
T ss_pred             CCCCCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHH
Confidence            45568999999999997765444432  358999999999999999876533211                         


Q ss_pred             ----CcEEEEEccccCCCC-C--CCCCCCCCEEEEeC-----C----ChhchHHHHHhcccCCCEEEEEeCCH-------
Q 026506          160 ----SFVTVGVRDIQGQGF-P--DEFSGLADSIFLDL-----P----QPWLAIPSAKKMLKQDGILCSFSPCI-------  216 (237)
Q Consensus       160 ----~~i~~~~~d~~~~~~-~--~~~~~~~D~v~~~~-----~----~~~~~l~~~~~~L~~gG~l~~~~~~~-------  216 (237)
                          ....+...|+..... .  ....+.||+|+...     +    ....+++++.++|||||.+++..+..       
T Consensus       129 ~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~  208 (263)
T d2g72a1         129 QLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAG  208 (263)
T ss_dssp             HHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEET
T ss_pred             HhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccC
Confidence                012334455543211 1  11125799997632     1    23467999999999999998653311       


Q ss_pred             --------HHHHHHHHHHHh-cCcccc
Q 026506          217 --------EQVQRSCESLRL-NFTGKE  234 (237)
Q Consensus       217 --------~~~~~~~~~l~~-~f~~v~  234 (237)
                              -..+.+.+.+++ ||..++
T Consensus       209 ~~~~~~~~~t~e~v~~~l~~aGf~v~~  235 (263)
T d2g72a1         209 EARLTVVPVSEEEVREALVRSGYKVRD  235 (263)
T ss_dssp             TEEEECCCCCHHHHHHHHHHTTEEEEE
T ss_pred             CcccccCCCCHHHHHHHHHHCCCeEEE
Confidence                    124677777888 786543

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.18  E-value=6e-11  Score=88.16  Aligned_cols=73  Identities=23%  Similarity=0.341  Sum_probs=58.8

Q ss_pred             cCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCC
Q 026506          104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLAD  183 (237)
Q Consensus       104 ~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D  183 (237)
                      .+--.|.+|||+|||+|.+++.++..  +..+|+++|+++.+++.|++|..     + +++..+|+.+  ++    +.||
T Consensus        44 ~~dl~Gk~VLDlGcGtG~l~i~a~~~--ga~~V~~vDid~~a~~~ar~N~~-----~-~~~~~~D~~~--l~----~~fD  109 (197)
T d1ne2a_          44 DGNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRNCG-----G-VNFMVADVSE--IS----GKYD  109 (197)
T ss_dssp             HTSSBTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHCT-----T-SEEEECCGGG--CC----CCEE
T ss_pred             cCCCCCCEEEEeCCCCcHHHHHHHHc--CCCcccccccCHHHHHHHHHccc-----c-ccEEEEehhh--cC----Ccce
Confidence            34446899999999999998665554  34689999999999999999742     3 7889999864  33    6799


Q ss_pred             EEEEeCC
Q 026506          184 SIFLDLP  190 (237)
Q Consensus       184 ~v~~~~~  190 (237)
                      +|+.|+|
T Consensus       110 ~Vi~NPP  116 (197)
T d1ne2a_         110 TWIMNPP  116 (197)
T ss_dssp             EEEECCC
T ss_pred             EEEeCcc
Confidence            9999987

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.17  E-value=3.6e-11  Score=94.35  Aligned_cols=124  Identities=14%  Similarity=0.111  Sum_probs=93.4

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc---------CCCCcEEEEEccccCCCCCCC
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT---------GVSSFVTVGVRDIQGQGFPDE  177 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~---------~~~~~i~~~~~d~~~~~~~~~  177 (237)
                      ....+||.+|+|.|..+..+++.  +..+++++|+++..++.|++.+...         ..+.+++++.+|+... +.. 
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~--~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~-l~~-  146 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEF-IKN-  146 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHH-HHH-
T ss_pred             CCCceEEEecCCchHHHHHHHHh--CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHH-Hhc-
Confidence            44579999999999999888764  4468999999999999999876322         1245699999998751 121 


Q ss_pred             CCCCCCEEEEeCCCh---------hchHHHHHhcccCCCEEEEEe--CC--HHHHHHHHHHHHhcCccccc
Q 026506          178 FSGLADSIFLDLPQP---------WLAIPSAKKMLKQDGILCSFS--PC--IEQVQRSCESLRLNFTGKES  235 (237)
Q Consensus       178 ~~~~~D~v~~~~~~~---------~~~l~~~~~~L~~gG~l~~~~--~~--~~~~~~~~~~l~~~f~~v~~  235 (237)
                       .++||+|++|..++         .++++.+.+.|+|+|++++.+  |.  ......+.+.+++.|..|..
T Consensus       147 -~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~~F~~v~~  216 (276)
T d1mjfa_         147 -NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYY  216 (276)
T ss_dssp             -CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEE
T ss_pred             -cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHHHhhCCeeEE
Confidence             26799999987654         367999999999999998764  22  24556666777777877654

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.17  E-value=7.6e-11  Score=92.96  Aligned_cols=125  Identities=17%  Similarity=0.265  Sum_probs=94.9

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG---VSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      ...+||.+|.|.|..+..+++.. +..+++.+|++++.++.+++.+....   -+.+++++.+|.... +.....+.||+
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~-l~~~~~~~yDv  157 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF-LKNAAEGSYDA  157 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH-HHTSCTTCEEE
T ss_pred             CCcceEEecCCchHHHHHHHhcc-cceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHH-HhhccccCccE
Confidence            45799999999999999888763 44689999999999999999764321   245699999998751 11111258999


Q ss_pred             EEEeCCCh---------hchHHHHHhcccCCCEEEEEeCC----HHHHHHHHHHHHhcCcccc
Q 026506          185 IFLDLPQP---------WLAIPSAKKMLKQDGILCSFSPC----IEQVQRSCESLRLNFTGKE  234 (237)
Q Consensus       185 v~~~~~~~---------~~~l~~~~~~L~~gG~l~~~~~~----~~~~~~~~~~l~~~f~~v~  234 (237)
                      |++|..++         .++++.+.+.|+|||++++...+    ......+.+.+++.|..+.
T Consensus       158 Ii~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~~~  220 (290)
T d1xj5a_         158 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKGSV  220 (290)
T ss_dssp             EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSSCE
T ss_pred             EEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhhcccce
Confidence            99988765         35799999999999999987654    3556677777777676553

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.16  E-value=6.8e-11  Score=92.54  Aligned_cols=126  Identities=18%  Similarity=0.144  Sum_probs=96.1

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-C--CCCcEEEEEccccCCCCCCCCCCCCC
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-G--VSSFVTVGVRDIQGQGFPDEFSGLAD  183 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~--~~~~i~~~~~d~~~~~~~~~~~~~~D  183 (237)
                      ....+||.+|.|.|..+..++++. +..+++.+|++++.++.|++.+... +  -+.+++++.+|...  +-.....+||
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~-~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~--~l~~~~~~yD  150 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFM--HIAKSENQYD  150 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHH--HHHTCCSCEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcC-CcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHH--HHhhcCCCCC
Confidence            345799999999999999888763 4579999999999999999986432 2  13569999999875  1111226799


Q ss_pred             EEEEeCCCh---------hchHHHHHhcccCCCEEEEEeCC----HHHHHHHHHHHHhcCccccc
Q 026506          184 SIFLDLPQP---------WLAIPSAKKMLKQDGILCSFSPC----IEQVQRSCESLRLNFTGKES  235 (237)
Q Consensus       184 ~v~~~~~~~---------~~~l~~~~~~L~~gG~l~~~~~~----~~~~~~~~~~l~~~f~~v~~  235 (237)
                      +|++|..++         .++++.+.+.|+|+|+++..+.+    ......+.+.+++.|..+..
T Consensus       151 vIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~~v~~  215 (274)
T d1iy9a_         151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKL  215 (274)
T ss_dssp             EEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEE
T ss_pred             EEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhhcCceEE
Confidence            999987654         35799999999999999987643    34456677777777877654

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.15  E-value=6e-11  Score=87.60  Aligned_cols=105  Identities=19%  Similarity=0.140  Sum_probs=78.5

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS-FVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      .+.+|||+.||+|.+++..+.+  ++.+++.+|.+...++.+++|++..+..+ ...+...|+.+..........||+||
T Consensus        43 ~~~~vLDlFaGsG~~glEalSR--GA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIF  120 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSR--QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVF  120 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEE
T ss_pred             ccceEeecccCccceeeeeeee--cceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEE
Confidence            6789999999999999998876  56799999999999999999999887643 46666666553111111125699999


Q ss_pred             EeCCChh----chHHHHH--hcccCCCEEEEEeC
Q 026506          187 LDLPQPW----LAIPSAK--KMLKQDGILCSFSP  214 (237)
Q Consensus       187 ~~~~~~~----~~l~~~~--~~L~~gG~l~~~~~  214 (237)
                      +|+|-..    ..++.+.  ..|+++|.+++-.+
T Consensus       121 lDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE~~  154 (183)
T d2ifta1         121 LDPPFHFNLAEQAISLLCENNWLKPNALIYVETE  154 (183)
T ss_dssp             ECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             echhHhhhhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence            9999433    3455543  46899999886543

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=7.9e-11  Score=92.57  Aligned_cols=126  Identities=21%  Similarity=0.211  Sum_probs=94.0

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc---CCCCcEEEEEccccCCCCCCCCCCCCC
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT---GVSSFVTVGVRDIQGQGFPDEFSGLAD  183 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~---~~~~~i~~~~~d~~~~~~~~~~~~~~D  183 (237)
                      ....+||.+|.|.|..+..+++.. +..+++.+|++++.++.|++.+...   --+.+++++.+|+..  +-.....+||
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~-~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~--~l~~~~~~yD  153 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFE--FMKQNQDAFD  153 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH--HHHTCSSCEE
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcC-CcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHH--HHhcCCCCCC
Confidence            345799999999999999888763 4579999999999999999986532   123569999999875  2111226899


Q ss_pred             EEEEeCCCh---------hchHHHHHhcccCCCEEEEEeCC----HHHHHHHHHHHHhcCccccc
Q 026506          184 SIFLDLPQP---------WLAIPSAKKMLKQDGILCSFSPC----IEQVQRSCESLRLNFTGKES  235 (237)
Q Consensus       184 ~v~~~~~~~---------~~~l~~~~~~L~~gG~l~~~~~~----~~~~~~~~~~l~~~f~~v~~  235 (237)
                      +|++|..++         .++++.+.+.|+|||.+++.+.+    ......+.+.+++.|+.+..
T Consensus       154 vIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~F~~v~~  218 (285)
T d2o07a1         154 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAY  218 (285)
T ss_dssp             EEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEEE
T ss_pred             EEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHhcCCeeeE
Confidence            999987654         25799999999999999977543    24455666667667887654

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.12  E-value=5.2e-11  Score=94.36  Aligned_cols=125  Identities=18%  Similarity=0.140  Sum_probs=93.2

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG---VSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      ...+||.+|.|.|..+..++++- +..+++.+|+++..++.+++.+....   -+.+++++.+|+.+  +-.....+||+
T Consensus       106 ~pk~VLIiGgG~G~~~rellk~~-~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~--~l~~~~~~yDv  182 (312)
T d2b2ca1         106 DPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFE--FLKNHKNEFDV  182 (312)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHH--HHHHCTTCEEE
T ss_pred             CCCeEEEeCCCchHHHHHHHHcC-CcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHH--HHHhCCCCCCE
Confidence            35799999999999999888763 44799999999999999999864321   13569999999875  21112367999


Q ss_pred             EEEeCCCh---------hchHHHHHhcccCCCEEEEEeCCH----HHHHHHHHHHHhcCccccc
Q 026506          185 IFLDLPQP---------WLAIPSAKKMLKQDGILCSFSPCI----EQVQRSCESLRLNFTGKES  235 (237)
Q Consensus       185 v~~~~~~~---------~~~l~~~~~~L~~gG~l~~~~~~~----~~~~~~~~~l~~~f~~v~~  235 (237)
                      |++|..++         .++++.+.+.|+|||++++.+.+.    +....+.+.+++.|..+..
T Consensus       183 II~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~v~~  246 (312)
T d2b2ca1         183 IITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTY  246 (312)
T ss_dssp             EEECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEE
T ss_pred             EEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhccceEEE
Confidence            99987654         357899999999999999876443    4456666777776876654

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.05  E-value=4.3e-10  Score=90.50  Aligned_cols=120  Identities=18%  Similarity=0.190  Sum_probs=89.0

Q ss_pred             ccccccHHH-HH----HhcCCCCCCEEEEEccCccHHHHHHHHHhC----CCcEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 026506           91 ILYIADISF-VI----MYLELVPGCLVLESGTGSGSLTTSLARAVA----PTGHVYTFDFHEQRAASAREDFERTGVSSF  161 (237)
Q Consensus        91 ~~~~~~~~~-~~----~~~~~~~~~~vldiG~G~G~~~~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~  161 (237)
                      .+.|..+.. +.    ..+..+++.+|+|.+||+|.++..+...+.    ...+++++|+++.+++.|+.+....+..  
T Consensus        95 ~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~--  172 (328)
T d2f8la1          95 QMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK--  172 (328)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC--
T ss_pred             EECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh--
Confidence            344665543 22    234677888999999999999988877652    2347999999999999999988877643  


Q ss_pred             EEEEEccccCCCCCCCCCCCCCEEEEeCCCh-----------------------hchHHHHHhcccCCCEEEEEeCCH
Q 026506          162 VTVGVRDIQGQGFPDEFSGLADSIFLDLPQP-----------------------WLAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       162 i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~-----------------------~~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                      ......|... ..+.   ..||+|+.|+|-.                       ..+++.+.+.|+|||+++++.|..
T Consensus       173 ~~~~~~d~~~-~~~~---~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~  246 (328)
T d2f8la1         173 MTLLHQDGLA-NLLV---DPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  246 (328)
T ss_dssp             CEEEESCTTS-CCCC---CCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             hhhhcccccc-cccc---ccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence            4566777653 2333   6899999999821                       125899999999999999887753

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.02  E-value=4.1e-11  Score=87.80  Aligned_cols=108  Identities=17%  Similarity=0.179  Sum_probs=78.0

Q ss_pred             HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .++..++++|++|+.+|||+ |.++.++++..+ ..+|+++|.++++++.+++    .|.+..+++...+..+.......
T Consensus        19 a~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~G-a~~Vi~~d~~~~r~~~a~~----lGa~~~i~~~~~~~~~~v~~~t~   93 (174)
T d1jqba2          19 GAELADIEMGSSVVVIGIGAVGLMGIAGAKLRG-AGRIIGVGSRPICVEAAKF----YGATDILNYKNGHIEDQVMKLTN   93 (174)
T ss_dssp             HHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTT-CSCEEEECCCHHHHHHHHH----HTCSEEECGGGSCHHHHHHHHTT
T ss_pred             HHHHhCCCCCCEEEEEcCCcchhhhhhhhhccc-ccccccccchhhhHHHHHh----hCccccccccchhHHHHHHHHhh
Confidence            56778899999999999999 888888888764 3679999999999999987    46544232222222210001111


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +.++|+||...+.+ ..++++.+.++|+|++++++
T Consensus        94 g~G~D~vid~~g~~-~~~~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2          94 GKGVDRVIMAGGGS-ETLSQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             TSCEEEEEECSSCT-THHHHHHHHEEEEEEEEECC
T ss_pred             ccCcceEEEccCCH-HHHHHHHHHHhcCCEEEEEe
Confidence            24699987766554 47899999999999999765

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.7e-10  Score=84.25  Aligned_cols=109  Identities=17%  Similarity=0.185  Sum_probs=78.1

Q ss_pred             HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC--CCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPD  176 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~  176 (237)
                      .+...+++++++|+.+|+|+ |.++.++++..+ ..+|+++|.++++++.|++    +|.+..+.....|..+  ..+..
T Consensus        18 a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G-~~~Vi~~d~~~~rl~~a~~----~Ga~~~~~~~~~~~~~~~~~~~~   92 (171)
T d1pl8a2          18 ACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAKE----IGADLVLQISKESPQEIARKVEG   92 (171)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTCSEEEECSSCCHHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEECCCccHHHHHHHHHHcC-CceEEeccCCHHHHHHHHH----hCCcccccccccccccccccccc
Confidence            56777899999999999999 777788888764 4689999999999999987    4655422221122111  00111


Q ss_pred             CCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       177 ~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ..+.++|+|+...+.+. .++.+.+.+++||++++++.
T Consensus        93 ~~g~g~Dvvid~~G~~~-~~~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2          93 QLGCKPEVTIECTGAEA-SIQAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             HHTSCCSEEEECSCCHH-HHHHHHHHSCTTCEEEECSC
T ss_pred             cCCCCceEEEeccCCch-hHHHHHHHhcCCCEEEEEec
Confidence            12257999877666544 89999999999999997764

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.99  E-value=3e-10  Score=86.13  Aligned_cols=109  Identities=17%  Similarity=0.199  Sum_probs=81.6

Q ss_pred             cccHH-HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC
Q 026506           94 IADIS-FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ  172 (237)
Q Consensus        94 ~~~~~-~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~  172 (237)
                      |..+. .++..+...++.+|||.|||+|.++..+.+.......++++|+++..++.          .....+..+|....
T Consensus         4 P~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~----------~~~~~~~~~~~~~~   73 (223)
T d2ih2a1           4 PPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL----------PPWAEGILADFLLW   73 (223)
T ss_dssp             CHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC----------CTTEEEEESCGGGC
T ss_pred             CHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh----------cccceeeeeehhcc
Confidence            33343 47788888999999999999999998888877666789999999864432          22366778887642


Q ss_pred             CCCCCCCCCCCEEEEeCCCh----------------------------------hchHHHHHhcccCCCEEEEEeCCH
Q 026506          173 GFPDEFSGLADSIFLDLPQP----------------------------------WLAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       173 ~~~~~~~~~~D~v~~~~~~~----------------------------------~~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                      . ..   ..||+++.++|-.                                  ..+++.+.+.|++||+++++.|..
T Consensus        74 ~-~~---~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~  147 (223)
T d2ih2a1          74 E-PG---EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT  147 (223)
T ss_dssp             C-CS---SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             c-cc---cccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeee
Confidence            2 22   6799999887611                                  134688899999999999887643

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.98  E-value=1.7e-09  Score=82.63  Aligned_cols=87  Identities=20%  Similarity=0.304  Sum_probs=70.7

Q ss_pred             HHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC
Q 026506           97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD  176 (237)
Q Consensus        97 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  176 (237)
                      +..+++.+++.++++|||||||+|.++..++..   ..+++++|+++.+.+.++++...  .++ ++++.+|+.+..++.
T Consensus        10 ~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~---~~~v~avE~D~~l~~~l~~~~~~--~~n-~~i~~~D~l~~~~~~   83 (235)
T d1qama_          10 IDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDHKLCKTTENKLVD--HDN-FQVLNKDILQFKFPK   83 (235)
T ss_dssp             HHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTTT--CCS-EEEECCCGGGCCCCS
T ss_pred             HHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC---cCceEEEeeccchHHHHHHHhhc--ccc-hhhhhhhhhhccccc
Confidence            345778888999999999999999999999987   36899999999999999987543  234 999999999765554


Q ss_pred             CCCCCCCEEEEeCCCh
Q 026506          177 EFSGLADSIFLDLPQP  192 (237)
Q Consensus       177 ~~~~~~D~v~~~~~~~  192 (237)
                         .....|+.|.|-.
T Consensus        84 ---~~~~~vv~NLPYn   96 (235)
T d1qama_          84 ---NQSYKIFGNIPYN   96 (235)
T ss_dssp             ---SCCCEEEEECCGG
T ss_pred             ---cccceeeeeehhh
Confidence               4445678888844

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.96  E-value=2.1e-10  Score=83.94  Aligned_cols=107  Identities=16%  Similarity=0.205  Sum_probs=77.9

Q ss_pred             HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      +...++++||++|+.+|+|+ |.++.++++..+ ..+++++|.+++.++.+++    +|....++....|+.+ ...+..
T Consensus        20 ~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g-~~~v~~~~~~~~k~~~a~~----~Ga~~~i~~~~~~~~~-~i~~~t   93 (174)
T d1f8fa2          20 CINALKVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQ----LGATHVINSKTQDPVA-AIKEIT   93 (174)
T ss_dssp             HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHH----HTCSEEEETTTSCHHH-HHHHHT
T ss_pred             HHHhhCCCCCCEEEEeCCCHHHhhhhhcccccc-cceeeeeccHHHHHHHHHH----cCCeEEEeCCCcCHHH-HHHHHc
Confidence            35567899999999999999 777888888875 4688999999999999987    4654423222222221 111112


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ++++|+||...... ..++.+.+.++|+|++++++
T Consensus        94 ~gg~D~vid~~G~~-~~~~~~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2          94 DGGVNFALESTGSP-EILKQGVDALGILGKIAVVG  127 (174)
T ss_dssp             TSCEEEEEECSCCH-HHHHHHHHTEEEEEEEEECC
T ss_pred             CCCCcEEEEcCCcH-HHHHHHHhcccCceEEEEEe
Confidence            36799988766654 48899999999999999875

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=1.3e-09  Score=79.76  Aligned_cols=119  Identities=15%  Similarity=0.175  Sum_probs=86.1

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCC-----CCCCCC
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF-----PDEFSG  180 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~~~~~~  180 (237)
                      ++++.+|||+||+||+++..+....+...+++++|+.+-           ..+.+ ..+..+|+.....     ......
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i~~-~~~~~~d~~~~~~~~~~~~~~~~~   87 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPIVG-VDFLQGDFRDELVMKALLERVGDS   87 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCCTT-EEEEESCTTSHHHHHHHHHHHTTC
T ss_pred             cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cccCC-ceEeecccccchhhhhhhhhccCc
Confidence            578999999999999999999988877789999998651           23444 7888888865111     001225


Q ss_pred             CCCEEEEeCCCh----------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHhcCcccccc
Q 026506          181 LADSIFLDLPQP----------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGKESC  236 (237)
Q Consensus       181 ~~D~v~~~~~~~----------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~v~~~  236 (237)
                      .+|+|+.|....                ...+.-+.+.|++||.+++=.-.......+...++..|..|.++
T Consensus        88 ~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~~F~~V~~~  159 (180)
T d1ej0a_          88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVR  159 (180)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHHEEEEEEE
T ss_pred             ceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHhhcCEEEEE
Confidence            799999987522                13577789999999998854433445566777777778777653

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=98.94  E-value=7.7e-10  Score=80.48  Aligned_cols=106  Identities=17%  Similarity=0.135  Sum_probs=76.9

Q ss_pred             HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-----
Q 026506          100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-----  173 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----  173 (237)
                      .+...+++++++|+.+|+|+ |.++.++++..+  .+++++|.++++++.+++    .+...  .+. .+.....     
T Consensus        18 a~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G--a~vi~v~~~~~r~~~a~~----~ga~~--~~~-~~~~~~~~~~~~   88 (170)
T d1e3ja2          18 ACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKN----CGADV--TLV-VDPAKEEESSII   88 (170)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH----TTCSE--EEE-CCTTTSCHHHHH
T ss_pred             HHHHhCCCCCCEEEEEcccccchhhHhhHhhhc--ccccccchHHHHHHHHHH----cCCcE--EEe-ccccccccchhh
Confidence            56777899999999999998 888888888763  589999999999999988    45432  221 1111110     


Q ss_pred             --CCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCC
Q 026506          174 --FPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       174 --~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                        +....+.++|+|+.....+ ..++.+.+.++++|++++++..
T Consensus        89 ~~~~~~~g~g~D~vid~~g~~-~~~~~a~~~~~~~G~iv~~G~~  131 (170)
T d1e3ja2          89 ERIRSAIGDLPNVTIDCSGNE-KCITIGINITRTGGTLMLVGMG  131 (170)
T ss_dssp             HHHHHHSSSCCSEEEECSCCH-HHHHHHHHHSCTTCEEEECSCC
T ss_pred             hhhhcccccCCceeeecCCCh-HHHHHHHHHHhcCCceEEEecC
Confidence              1111236799987666554 4899999999999999988643

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.93  E-value=9.5e-09  Score=75.16  Aligned_cols=122  Identities=17%  Similarity=0.108  Sum_probs=93.4

Q ss_pred             HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC--CCCC
Q 026506           99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPD  176 (237)
Q Consensus        99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~  176 (237)
                      .++..+.+.+|..++|..+|.|+.+..++..   .++|+++|.++++++.+++.     ...++.+.+.++.+.  .+..
T Consensus         9 Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~~~~l~~   80 (182)
T d1wg8a2           9 EALDLLAVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHLKRHLAA   80 (182)
T ss_dssp             HHHHHHTCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGHHHHHHH
T ss_pred             HHHHhcCCCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHHHHHHHH
Confidence            4677888999999999999999999888875   47999999999999988763     234588888887651  1111


Q ss_pred             CCCCCCCEEEEeCCCh--------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh
Q 026506          177 EFSGLADSIFLDLPQP--------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL  228 (237)
Q Consensus       177 ~~~~~~D~v~~~~~~~--------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~  228 (237)
                      ...+.+|.|+.|.+-.              ...|+...+.|++||++++.+-.....+.+...+++
T Consensus        81 ~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~~~~e  146 (182)
T d1wg8a2          81 LGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRE  146 (182)
T ss_dssp             TTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHHHHH
T ss_pred             cCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHHHHhh
Confidence            1125799999987522              135888899999999999888777665666666666

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.92  E-value=5.4e-09  Score=80.27  Aligned_cols=121  Identities=16%  Similarity=0.139  Sum_probs=88.0

Q ss_pred             HHHhcC-CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          100 VIMYLE-LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       100 ~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      +++..+ .....+|||+|||+|.++..++++. |..++++.|+ |+.++       ......++++..+|+.+ ..+   
T Consensus        72 l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~-------~~~~~~ri~~~~gd~~~-~~p---  138 (244)
T d1fp1d2          72 MLEIYTGFEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIE-------NAPPLSGIEHVGGDMFA-SVP---  138 (244)
T ss_dssp             HHHHCCTTTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHT-------TCCCCTTEEEEECCTTT-CCC---
T ss_pred             HHHhcccccCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEecc-hhhhh-------ccCCCCCeEEecCCccc-ccc---
Confidence            555555 4566899999999999999999986 7789999998 54433       23444669999999974 343   


Q ss_pred             CCCCCEEEEe-----CCCh--hchHHHHHhcccCCCEEEEEeCC--------HH--------------------HHHHHH
Q 026506          179 SGLADSIFLD-----LPQP--WLAIPSAKKMLKQDGILCSFSPC--------IE--------------------QVQRSC  223 (237)
Q Consensus       179 ~~~~D~v~~~-----~~~~--~~~l~~~~~~L~~gG~l~~~~~~--------~~--------------------~~~~~~  223 (237)
                        ..|++++.     .++.  ..+|+++++.|+|||++++....        ..                    +.+++.
T Consensus       139 --~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~  216 (244)
T d1fp1d2         139 --QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYE  216 (244)
T ss_dssp             --CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHH
T ss_pred             --cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHH
Confidence              35998763     2222  25799999999999999876521        10                    035777


Q ss_pred             HHHHh-cCccccc
Q 026506          224 ESLRL-NFTGKES  235 (237)
Q Consensus       224 ~~l~~-~f~~v~~  235 (237)
                      +.+++ ||+.+++
T Consensus       217 ~ll~~AGF~~v~v  229 (244)
T d1fp1d2         217 KLSKLSGFSKFQV  229 (244)
T ss_dssp             HHHHHTTCSEEEE
T ss_pred             HHHHHcCCCceEE
Confidence            78888 8988876

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=98.92  E-value=3.7e-10  Score=82.57  Aligned_cols=109  Identities=13%  Similarity=0.111  Sum_probs=78.5

Q ss_pred             HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc-CCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ-GQGFPDE  177 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~-~~~~~~~  177 (237)
                      ++...++++|++|+.+|||+ |.+++++++..+ ..+|+++|.++++++.+++    +|.+..++....|-. .......
T Consensus        20 ~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~G-a~~Vi~~d~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~~~~~   94 (174)
T d1e3ia2          20 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKA----LGATDCLNPRELDKPVQDVITEL   94 (174)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHhC-CceeeeeccchHHHHHHHH----hCCCcccCCccchhhhhhhHhhh
Confidence            34567899999999999999 888888888874 4789999999999999988    576542222111110 0000111


Q ss_pred             CCCCCCEEEEeCCChhchHHHHHhcccCC-CEEEEEeC
Q 026506          178 FSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFSP  214 (237)
Q Consensus       178 ~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  214 (237)
                      ..+++|++|.....+. +++.+.+.+++| |++++++.
T Consensus        95 ~~~G~d~vie~~G~~~-~~~~a~~~~~~g~G~~v~vG~  131 (174)
T d1e3ia2          95 TAGGVDYSLDCAGTAQ-TLKAAVDCTVLGWGSCTVVGA  131 (174)
T ss_dssp             HTSCBSEEEESSCCHH-HHHHHHHTBCTTTCEEEECCC
T ss_pred             hcCCCcEEEEecccch-HHHHHHHHhhcCCeEEEecCC
Confidence            2367999887766655 899999999996 99997754

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=1.3e-08  Score=75.86  Aligned_cols=102  Identities=13%  Similarity=0.126  Sum_probs=83.9

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      -++.+++|+|+|.|.-++.++-. .|..+++.+|.+...+.+.++.....++.+ +++....+.+.. ..   ..||+|+
T Consensus        64 ~~~~~ilDiGsGaG~PGi~laI~-~p~~~~~Lves~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~~~-~~---~~fD~V~  137 (207)
T d1jsxa_          64 LQGERFIDVGTGPGLPGIPLSIV-RPEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFP-SE---PPFDGVI  137 (207)
T ss_dssp             CCSSEEEEETCTTTTTHHHHHHH-CTTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSC-CC---SCEEEEE
T ss_pred             hcCCceeeeeccCCceeeehhhh-cccceEEEEecchHHHHHHHHHHHHcCCcc-eeeeccchhhhc-cc---cccceeh
Confidence            35679999999999988888876 477899999999999999999999999887 999998887522 22   5799988


Q ss_pred             EeCC-ChhchHHHHHhcccCCCEEEEEeC
Q 026506          187 LDLP-QPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       187 ~~~~-~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .-+- ....+++-+.+.++++|.++++-.
T Consensus       138 sRA~~~~~~ll~~~~~~l~~~g~~~~~KG  166 (207)
T d1jsxa_         138 SRAFASLNDMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             CSCSSSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred             hhhhcCHHHHHHHHHHhcCCCcEEEEECC
Confidence            7553 444678888999999999998854

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.83  E-value=6.6e-10  Score=82.68  Aligned_cols=109  Identities=17%  Similarity=0.074  Sum_probs=75.2

Q ss_pred             HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .++.+++++|++||.+|||+ |.++..+++.. +..+|+++|.++++++.|++    .|.+..+.....|+.+.......
T Consensus        17 a~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~-ga~~Vi~~d~~~~rl~~a~~----~Ga~~~~~~~~~~~~~~i~~~t~   91 (195)
T d1kola2          17 GAVTAGVGPGSTVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAKA----QGFEIADLSLDTPLHEQIAALLG   91 (195)
T ss_dssp             HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHH----TTCEEEETTSSSCHHHHHHHHHS
T ss_pred             HHHHhCCCCCCEEEEECcCHHHHHHHHHHHhh-cccceeeecccchhhHhhhh----ccccEEEeCCCcCHHHHHHHHhC
Confidence            46778899999999999999 66777777775 45799999999999999988    46432111111222110000011


Q ss_pred             CCCCCEEEEeCCC--------------hhchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFLDLPQ--------------PWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~~~~--------------~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +.++|+++.....              ..+.++.+.+.++|||++++++
T Consensus        92 g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G  140 (195)
T d1kola2          92 EPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  140 (195)
T ss_dssp             SSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             CCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence            2579998865432              2358999999999999999775

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.83  E-value=8e-09  Score=85.80  Aligned_cols=123  Identities=15%  Similarity=0.112  Sum_probs=95.4

Q ss_pred             ccccccccHH-HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCC------------CcEEEEEeCCHHHHHHHHHHHHH
Q 026506           89 TQILYIADIS-FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAP------------TGHVYTFDFHEQRAASAREDFER  155 (237)
Q Consensus        89 ~~~~~~~~~~-~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~------------~~~v~~vD~~~~~~~~a~~~~~~  155 (237)
                      .+...|..+. .++..+.+.++.+|+|..||+|++...+.+++..            ...++++|+++.....|+.++..
T Consensus       142 G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l  221 (425)
T d2okca1         142 GQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL  221 (425)
T ss_dssp             GGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH
T ss_pred             hhhccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhh
Confidence            4566677665 4778888889999999999999999888776521            12489999999999999999887


Q ss_pred             cCCCC-cEEEEEccccCCCCCCCCCCCCCEEEEeCCCh----------------------hchHHHHHhcccCCCEEEEE
Q 026506          156 TGVSS-FVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP----------------------WLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       156 ~~~~~-~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~----------------------~~~l~~~~~~L~~gG~l~~~  212 (237)
                      ++... ..++...|.... .+.   ..||+|+.|+|-.                      ..+++.+.+.|++||+++++
T Consensus       222 ~g~~~~~~~i~~~d~l~~-~~~---~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI  297 (425)
T d2okca1         222 HGIGTDRSPIVCEDSLEK-EPS---TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVV  297 (425)
T ss_dssp             TTCCSSCCSEEECCTTTS-CCS---SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCccccceeecCchhhh-hcc---cccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEE
Confidence            77542 255677787642 222   6799999998721                      24799999999999999988


Q ss_pred             eCC
Q 026506          213 SPC  215 (237)
Q Consensus       213 ~~~  215 (237)
                      .|.
T Consensus       298 ~p~  300 (425)
T d2okca1         298 LPD  300 (425)
T ss_dssp             EEH
T ss_pred             ech
Confidence            874

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=98.83  E-value=1.6e-09  Score=79.67  Aligned_cols=106  Identities=20%  Similarity=0.244  Sum_probs=74.8

Q ss_pred             HhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC--CCCCC-C
Q 026506          102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPD-E  177 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~-~  177 (237)
                      +..++++|++||.+|+|+ |.++.++++..+. .+|+++|.++++++.+++    .|.+..++....|..+  ....+ .
T Consensus        22 ~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga-~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~i~~~~   96 (182)
T d1vj0a2          22 EYPESFAGKTVVIQGAGPLGLFGVVIARSLGA-ENVIVIAGSPNRLKLAEE----IGADLTLNRRETSVEERRKAIMDIT   96 (182)
T ss_dssp             TCSSCCBTCEEEEECCSHHHHHHHHHHHHTTB-SEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHHHHT
T ss_pred             HHhCCCCCCEEEEECCCccchhheeccccccc-cccccccccccccccccc----ccceEEEeccccchHHHHHHHHHhh
Confidence            345688999999999998 8889999988743 589999999999999987    4654323222222211  00000 1


Q ss_pred             CCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       178 ~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .+.++|+||...+.+ ..++.+.+.|++||++++++
T Consensus        97 ~~~g~Dvvid~vG~~-~~~~~a~~~l~~~G~iv~~G  131 (182)
T d1vj0a2          97 HGRGADFILEATGDS-RALLEGSELLRRGGFYSVAG  131 (182)
T ss_dssp             TTSCEEEEEECSSCT-THHHHHHHHEEEEEEEEECC
T ss_pred             CCCCceEEeecCCch-hHHHHHHHHhcCCCEEEEEe
Confidence            124699987666544 47899999999999998774

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.7e-08  Score=78.57  Aligned_cols=88  Identities=27%  Similarity=0.372  Sum_probs=73.0

Q ss_pred             HHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC
Q 026506           97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD  176 (237)
Q Consensus        97 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  176 (237)
                      +..+++.+++.+++.|||+|+|+|.++..+++..   .+++++|+++.+++..++.+.......+++++.+|+....++ 
T Consensus        10 ~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~---~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~-   85 (278)
T d1zq9a1          10 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP-   85 (278)
T ss_dssp             HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC-
T ss_pred             HHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcC---CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh-
Confidence            4457788889999999999999999999999872   689999999999999999887655545699999999864443 


Q ss_pred             CCCCCCCEEEEeCCCh
Q 026506          177 EFSGLADSIFLDLPQP  192 (237)
Q Consensus       177 ~~~~~~D~v~~~~~~~  192 (237)
                          .++.|+.|.|-.
T Consensus        86 ----~~~~vV~NLPY~   97 (278)
T d1zq9a1          86 ----FFDTCVANLPYQ   97 (278)
T ss_dssp             ----CCSEEEEECCGG
T ss_pred             ----hhhhhhcchHHH
Confidence                367889998844

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.82  E-value=1.9e-08  Score=76.41  Aligned_cols=120  Identities=13%  Similarity=0.120  Sum_probs=90.2

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      ..+.+++|+|+|.|.-++.++-.. |..+++.+|.+.....+.+......++.+ +.+....+............||+|+
T Consensus        69 ~~~~~ilDiGSGaGfPGi~laI~~-p~~~v~Lves~~KK~~FL~~v~~~L~L~n-~~i~~~R~E~~~~~~~~~~~~D~v~  146 (239)
T d1xdza_          69 NQVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQLEN-TTFCHDRAETFGQRKDVRESYDIVT  146 (239)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEESCHHHHTTCTTTTTCEEEEE
T ss_pred             cCCCeEEeecCCCchHHHHHHHhC-CCccceeecchHHHHHHHHHHHHHhCCCC-cEEEeehhhhccccccccccceEEE
Confidence            457799999999999888887764 67899999999999999999999999987 8888877654222111226799999


Q ss_pred             EeCC-ChhchHHHHHhcccCCCEEEEEeCCH--HHHHHHHHHHHh
Q 026506          187 LDLP-QPWLAIPSAKKMLKQDGILCSFSPCI--EQVQRSCESLRL  228 (237)
Q Consensus       187 ~~~~-~~~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~l~~  228 (237)
                      .-+- ....+++.+...+++||+++++-...  +.++.....+..
T Consensus       147 sRAva~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~  191 (239)
T d1xdza_         147 ARAVARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITT  191 (239)
T ss_dssp             EECCSCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHH
T ss_pred             EhhhhCHHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHH
Confidence            8653 44468899999999999999886433  334444444444

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=98.79  E-value=2.9e-09  Score=77.68  Aligned_cols=108  Identities=14%  Similarity=0.099  Sum_probs=75.7

Q ss_pred             HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc-CCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ-GQGFPDE  177 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~-~~~~~~~  177 (237)
                      +++..++++|++|+.+|+|+ |..+.++++..+ ..+|+++|.++++++.+++    +|.+..+++...|.. .......
T Consensus        19 ~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G-~~~Vi~~d~~~~kl~~a~~----lGa~~~i~~~~~d~~~~~~~~~~   93 (174)
T d1p0fa2          19 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAIE----LGATECLNPKDYDKPIYEVICEK   93 (174)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcC-CceeeccCChHHHHHHHHH----cCCcEEEcCCCchhHHHHHHHHh
Confidence            34567899999999999999 777788888874 4789999999999999988    576543333223311 0011112


Q ss_pred             CCCCCCEEEEeCCChhchHHHHHhcccC-CCEEEEEe
Q 026506          178 FSGLADSIFLDLPQPWLAIPSAKKMLKQ-DGILCSFS  213 (237)
Q Consensus       178 ~~~~~D~v~~~~~~~~~~l~~~~~~L~~-gG~l~~~~  213 (237)
                      .++++|.+|....... .++.....+++ +|++++++
T Consensus        94 ~~~G~d~vid~~g~~~-~~~~~~~~~~~~~G~~v~vG  129 (174)
T d1p0fa2          94 TNGGVDYAVECAGRIE-TMMNALQSTYCGSGVTVVLG  129 (174)
T ss_dssp             TTSCBSEEEECSCCHH-HHHHHHHTBCTTTCEEEECC
T ss_pred             cCCCCcEEEEcCCCch-HHHHHHHHHHHhcCceEEEE
Confidence            3367999887776655 66777776655 68988765

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.77  E-value=2.6e-09  Score=77.54  Aligned_cols=104  Identities=18%  Similarity=0.249  Sum_probs=74.1

Q ss_pred             HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .+...++++|++|+.+|+|+ |.++.++++..+  .+++++|.++++++.+++    +|.+..+..  .+-  .......
T Consensus        19 al~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~a~~----lGa~~~i~~--~~~--~~~~~~~   88 (168)
T d1piwa2          19 PLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKREDAMK----MGADHYIAT--LEE--GDWGEKY   88 (168)
T ss_dssp             HHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHH----HTCSEEEEG--GGT--SCHHHHS
T ss_pred             HHHHhCcCCCCEEEEECCCCcchhHHHHhhhcc--ccccccccchhHHHHhhc----cCCcEEeec--cch--HHHHHhh
Confidence            45667899999999999998 888888888873  589999999999999887    475532221  111  1111112


Q ss_pred             CCCCCEEEEeCCCh-hchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFLDLPQP-WLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~~~~~-~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .+.+|.++...... ...++.+.+.|+|+|++++++
T Consensus        89 ~~~~d~vi~~~~~~~~~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2          89 FDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             CSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECC
T ss_pred             hcccceEEEEecCCccchHHHHHHHhhccceEEEec
Confidence            26799987654332 235788999999999998664

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.77  E-value=2.2e-09  Score=77.95  Aligned_cols=108  Identities=18%  Similarity=0.196  Sum_probs=75.5

Q ss_pred             HHHhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE  177 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  177 (237)
                      .+...+++++++|+.+|+ |+ |.++.++++..+ ..+|+++|.+++.++.+++    .|.+..++....|..+......
T Consensus        19 al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g-~~~V~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~   93 (170)
T d1jvba2          19 AVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKR----AGADYVINASMQDPLAEIRRIT   93 (170)
T ss_dssp             HHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT
T ss_pred             HHHHhCCCCCCEEEEEeccccceeeeeecccccc-cccccccccchhhHHHHHH----cCCceeeccCCcCHHHHHHHHh
Confidence            567788999999999996 65 677777888764 4789999999999999987    4654323222222221111111


Q ss_pred             CCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       178 ~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .++.+|+++..... ...++.+.+.++|||++++++
T Consensus        94 ~~~~~d~vid~~g~-~~~~~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2          94 ESKGVDAVIDLNNS-EKTLSVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             TTSCEEEEEESCCC-HHHHTTGGGGEEEEEEEEECC
T ss_pred             hcccchhhhccccc-chHHHhhhhhcccCCEEEEec
Confidence            22569987765544 448899999999999999775

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.74  E-value=2.8e-09  Score=77.14  Aligned_cols=105  Identities=24%  Similarity=0.295  Sum_probs=74.5

Q ss_pred             HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .+...++++|++|+.+|+|+ |.++.++++..+  .+|+++|.+++.++.+++    .|.+..++....|..+ ......
T Consensus        19 al~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G--~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~-~~~~~~   91 (166)
T d1llua2          19 GLKQTNARPGQWVAISGIGGLGHVAVQYARAMG--LHVAAIDIDDAKLELARK----LGASLTVNARQEDPVE-AIQRDI   91 (166)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHH-HHHHHH
T ss_pred             HHHHhCCCCCCEEEEeeccccHHHHHHHHHHcC--CccceecchhhHHHhhhc----cCccccccccchhHHH-HHHHhh
Confidence            45667899999999999999 888888888863  689999999999999887    5654423222222211 011111


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                       .++|.++.+.... ..++.+.+.|+++|++++++
T Consensus        92 -~g~~~~i~~~~~~-~~~~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2          92 -GGAHGVLVTAVSN-SAFGQAIGMARRGGTIALVG  124 (166)
T ss_dssp             -SSEEEEEECCSCH-HHHHHHHTTEEEEEEEEECC
T ss_pred             -cCCcccccccccc-hHHHHHHHHhcCCcEEEEEE
Confidence             3456666666555 47899999999999999765

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=98.71  E-value=4.7e-09  Score=76.68  Aligned_cols=107  Identities=10%  Similarity=0.067  Sum_probs=73.2

Q ss_pred             HHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC-CCCCCC
Q 026506          101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GFPDEF  178 (237)
Q Consensus       101 ~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~  178 (237)
                      ....++++|++|+.+|+|+ |.++.++++.. +..+|+++|.++++++.|++    +|.+..++....|.... ......
T Consensus        22 ~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~-G~~~Vi~vd~~~~kl~~Ak~----~GA~~~in~~~~~~~~~~~~~~~~   96 (176)
T d1d1ta2          22 VKTGKVKPGSTCVVFGLGGVGLSVIMGCKSA-GASRIIGIDLNKDKFEKAMA----VGATECISPKDSTKPISEVLSEMT   96 (176)
T ss_dssp             HTTSCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHH----HTCSEEECGGGCSSCHHHHHHHHH
T ss_pred             HHhhCCCCCCEEEEECCCchhHHHHHHHHHc-CCceEEEecCcHHHHHHHHh----cCCcEEECccccchHHHHHHHHhc
Confidence            4556799999999999999 67778888876 44799999999999999998    47654333222221100 001112


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcc-cCCCEEEEEe
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKML-KQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L-~~gG~l~~~~  213 (237)
                      +.++|+++.....+. .++.....+ +++|++++++
T Consensus        97 g~G~d~vi~~~g~~~-~~~~a~~~~~~~~G~~v~vG  131 (176)
T d1d1ta2          97 GNNVGYTFEVIGHLE-TMIDALASCHMNYGTSVVVG  131 (176)
T ss_dssp             TSCCCEEEECSCCHH-HHHHHHTTSCTTTCEEEECS
T ss_pred             cccceEEEEeCCchH-HHHHHHHHhhcCCeEEEEEE
Confidence            367999887776665 556655555 5559998775

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.71  E-value=1.3e-09  Score=83.75  Aligned_cols=89  Identities=27%  Similarity=0.329  Sum_probs=71.4

Q ss_pred             ccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCC
Q 026506           95 ADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF  174 (237)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~  174 (237)
                      ..+..+++.+++.++++|||||||+|.++..+++.   ..+++++|+++.+++.+++++.   ...++++..+|+.+.++
T Consensus        16 ~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~---~~~v~aIE~D~~l~~~l~~~~~---~~~n~~ii~~D~l~~~~   89 (245)
T d1yuba_          16 KVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQFQF   89 (245)
T ss_dssp             TTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTTTC
T ss_pred             HHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh---cCceeEeeecccchhhhhhhhh---hccchhhhhhhhhcccc
Confidence            34456888999999999999999999999999887   3689999999999888876542   22349999999987666


Q ss_pred             CCCCCCCCCEEEEeCCCh
Q 026506          175 PDEFSGLADSIFLDLPQP  192 (237)
Q Consensus       175 ~~~~~~~~D~v~~~~~~~  192 (237)
                      +.   ..++.|+.+.|-.
T Consensus        90 ~~---~~~~~vv~NLPY~  104 (245)
T d1yuba_          90 PN---KQRYKIVGNIPYH  104 (245)
T ss_dssp             CC---SSEEEEEEECCSS
T ss_pred             cc---ceeeeEeeeeehh
Confidence            54   5567788888844

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.69  E-value=2.9e-08  Score=80.63  Aligned_cols=108  Identities=16%  Similarity=0.053  Sum_probs=84.2

Q ss_pred             CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC--------------cEEEEEccccCCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS--------------FVTVGVRDIQGQG  173 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~--------------~i~~~~~d~~~~~  173 (237)
                      .+.+|||..||+|..++..+...+ ..+|+++|+|+..++.+++|++.++..+              .+.+...|+...-
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~  123 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM  123 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence            567999999999999998888764 5789999999999999999999887643              2445555654211


Q ss_pred             CCCCCCCCCCEEEEeCC-ChhchHHHHHhcccCCCEEEEEeCCHHH
Q 026506          174 FPDEFSGLADSIFLDLP-QPWLAIPSAKKMLKQDGILCSFSPCIEQ  218 (237)
Q Consensus       174 ~~~~~~~~~D~v~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~~~~~  218 (237)
                      ..  .+..||+|.+|+- .+..+++.+.+.++.||.|.+-++-...
T Consensus       124 ~~--~~~~fDvIDiDPfGs~~pfldsAi~a~~~~Gll~vTaTD~a~  167 (375)
T d2dula1         124 AE--RHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTATDGAP  167 (375)
T ss_dssp             HH--STTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEECCHHH
T ss_pred             Hh--hcCcCCcccCCCCCCcHHHHHHHHHHhccCCEEEEEecCchh
Confidence            11  1257999999974 4467999999999999999988765544

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.69  E-value=8.6e-08  Score=73.45  Aligned_cols=99  Identities=15%  Similarity=0.162  Sum_probs=70.3

Q ss_pred             HHHhcCC-CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          100 VIMYLEL-VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       100 ~~~~~~~-~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      ++..... ....+|+|+|||+|.++..++++. |..++++.|+.+ .++.       .....++.+..+|+.+ .+|.  
T Consensus        72 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-vi~~-------~~~~~r~~~~~~d~~~-~~P~--  139 (243)
T d1kyza2          72 ILETYTGFEGLKSLVDVGGGTGAVINTIVSKY-PTIKGINFDLPH-VIED-------APSYPGVEHVGGDMFV-SIPK--  139 (243)
T ss_dssp             HHHHCCTTSSCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEECTT-TTTT-------CCCCTTEEEEECCTTT-CCCC--
T ss_pred             HHHhcccccCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEcccHH-hhhh-------cccCCceEEecccccc-cCCC--
Confidence            4444443 445799999999999999999986 778999999843 3322       2334569999999974 4443  


Q ss_pred             CCCCCEEEE-eC----C--ChhchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFL-DL----P--QPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~-~~----~--~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                         .|.+++ +.    +  ....+|+++.+.|+|||++++..
T Consensus       140 ---ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d  178 (243)
T d1kyza2         140 ---ADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAE  178 (243)
T ss_dssp             ---CSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEE
T ss_pred             ---cceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEE
Confidence               455443 22    2  12358999999999999988763

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.68  E-value=9.4e-08  Score=73.21  Aligned_cols=92  Identities=17%  Similarity=0.198  Sum_probs=69.1

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      ....+|+|+|+|+|.++..++++. |..++++.|. |+.++.       .+...++++..+|+.+ ..     ..+|+++
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~-------~~~~~rv~~~~gD~f~-~~-----p~aD~~~  143 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVEN-------LSGSNNLTYVGGDMFT-SI-----PNADAVL  143 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTT-------CCCBTTEEEEECCTTT-CC-----CCCSEEE
T ss_pred             cCceEEEEecCCccHHHHHHHHhC-CCCeEEEecC-HHHHHh-------CcccCceEEEecCccc-CC-----CCCcEEE
Confidence            344689999999999999999986 6689999998 544432       3445679999999984 32     3479987


Q ss_pred             Ee-----CCCh--hchHHHHHhcccCC---CEEEEEe
Q 026506          187 LD-----LPQP--WLAIPSAKKMLKQD---GILCSFS  213 (237)
Q Consensus       187 ~~-----~~~~--~~~l~~~~~~L~~g---G~l~~~~  213 (237)
                      +.     .++.  ..+|+++.+.|+||   |++++..
T Consensus       144 l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e  180 (244)
T d1fp2a2         144 LKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIID  180 (244)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             EEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEE
Confidence            63     3322  25799999999999   6676653

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=1.4e-08  Score=73.57  Aligned_cols=105  Identities=23%  Similarity=0.276  Sum_probs=76.4

Q ss_pred             HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .+...++++|++|+.+|+|+ |.++.++++..+  .+++++|.+++.++.+++    .|.+..++....+..   ..  .
T Consensus        22 al~~~~~~~G~~VlI~GaG~vG~~a~qlak~~G--a~~i~~~~~~~~~~~a~~----lGad~~i~~~~~~~~---~~--~   90 (168)
T d1uufa2          22 PLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAKREAAKA----LGADEVVNSRNADEM---AA--H   90 (168)
T ss_dssp             HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHH----HTCSEEEETTCHHHH---HT--T
T ss_pred             HHHHhCCCCCCEEEEeccchHHHHHHHHhhccc--ccchhhccchhHHHHHhc----cCCcEEEECchhhHH---HH--h
Confidence            55677899999999999999 888899998863  577789999998888876    465542322211111   11  1


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCCH
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                      ..++|.++.....+. .++.+.+.++++|++++++...
T Consensus        91 ~~~~D~vid~~g~~~-~~~~~~~~l~~~G~iv~~G~~~  127 (168)
T d1uufa2          91 LKSFDFILNTVAAPH-NLDDFTTLLKRDGTMTLVGAPA  127 (168)
T ss_dssp             TTCEEEEEECCSSCC-CHHHHHTTEEEEEEEEECCCC-
T ss_pred             cCCCceeeeeeecch-hHHHHHHHHhcCCEEEEeccCC
Confidence            257999887665543 7899999999999999886433

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.64  E-value=1e-08  Score=74.59  Aligned_cols=102  Identities=21%  Similarity=0.241  Sum_probs=72.3

Q ss_pred             CCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCC
Q 026506          105 ELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLAD  183 (237)
Q Consensus       105 ~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D  183 (237)
                      .++||++||.+|+|+ |.++.++++..+. .+++++|.++++++.+++    .+.+..++.. .|..+.......+.++|
T Consensus        29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~-~~vv~~~~~~~k~~~~~~----~ga~~~i~~~-~~~~~~~~~~~~~~g~d  102 (172)
T d1h2ba2          29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTP-ATVIALDVKEEKLKLAER----LGADHVVDAR-RDPVKQVMELTRGRGVN  102 (172)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHCC-CEEEEEESSHHHHHHHHH----TTCSEEEETT-SCHHHHHHHHTTTCCEE
T ss_pred             ccCCCCEEEEeCCChHHHHHHHHHHhhcC-cccccccchhHHHHHHhh----cccceeecCc-ccHHHHHHHhhCCCCce
Confidence            478999999999999 7778888888754 689999999999999887    4544322211 11111111111225699


Q ss_pred             EEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          184 SIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       184 ~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +|+....... .++.+.+.|+++|++++++
T Consensus       103 ~vid~~g~~~-~~~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2         103 VAMDFVGSQA-TVDYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             EEEESSCCHH-HHHHGGGGEEEEEEEEECC
T ss_pred             EEEEecCcch-HHHHHHHHHhCCCEEEEEe
Confidence            9776665544 7999999999999999775

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=2.7e-08  Score=84.66  Aligned_cols=126  Identities=12%  Similarity=0.051  Sum_probs=89.7

Q ss_pred             ccccccccHH-HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCC-----------------CcEEEEEeCCHHHHHHHH
Q 026506           89 TQILYIADIS-FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAP-----------------TGHVYTFDFHEQRAASAR  150 (237)
Q Consensus        89 ~~~~~~~~~~-~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~-----------------~~~v~~vD~~~~~~~~a~  150 (237)
                      .+...|..+. .++..+.+.++.+|+|..||+|++...+..++..                 ...+++.|+++.....|+
T Consensus       144 GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~  223 (524)
T d2ar0a1         144 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL  223 (524)
T ss_dssp             -CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred             chhccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHH
Confidence            4455566655 4778888999999999999999999887765421                 125899999999999999


Q ss_pred             HHHHHcCCCCc----EEEEEccccCCCCCCCCCCCCCEEEEeCCCh-------------------hchHHHHHhcccCCC
Q 026506          151 EDFERTGVSSF----VTVGVRDIQGQGFPDEFSGLADSIFLDLPQP-------------------WLAIPSAKKMLKQDG  207 (237)
Q Consensus       151 ~~~~~~~~~~~----i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~-------------------~~~l~~~~~~L~~gG  207 (237)
                      -++..++....    ......+.......  ...+||+|+.|+|-.                   ..+++.+.+.|++||
T Consensus       224 ~nl~l~~~~~~i~~~~~~~~~~~l~~d~~--~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gG  301 (524)
T d2ar0a1         224 MNCLLHDIEGNLDHGGAIRLGNTLGSDGE--NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGG  301 (524)
T ss_dssp             HHHHTTTCCCBGGGTBSEEESCTTSHHHH--TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEE
T ss_pred             HHHHhhcccccccccchhhhhhhhhhccc--ccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccC
Confidence            98876664321    12233343321111  115799999998721                   247999999999999


Q ss_pred             EEEEEeCCH
Q 026506          208 ILCSFSPCI  216 (237)
Q Consensus       208 ~l~~~~~~~  216 (237)
                      ++.++.|..
T Consensus       302 r~aiIlP~~  310 (524)
T d2ar0a1         302 RAAVVVPDN  310 (524)
T ss_dssp             EEEEEEEHH
T ss_pred             cEEEEEehH
Confidence            999888743

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=8.5e-09  Score=75.11  Aligned_cols=105  Identities=16%  Similarity=0.077  Sum_probs=73.1

Q ss_pred             HHhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          101 IMYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       101 ~~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      ....++++|++||..|+ |+ |..++++++..+  .++++++.+++..+.+++    .|.+..++....|+.+.......
T Consensus        21 ~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G--~~vi~~~~~~~~~~~~~~----~Ga~~vi~~~~~~~~~~i~~~t~   94 (174)
T d1yb5a2          21 IHSACVKAGESVLVHGASGGVGLAACQIARAYG--LKILGTAGTEEGQKIVLQ----NGAHEVFNHREVNYIDKIKKYVG   94 (174)
T ss_dssp             HTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH----TTCSEEEETTSTTHHHHHHHHHC
T ss_pred             HHHhCCCCCCEEEEEeccccccccccccccccC--cccccccccccccccccc----cCcccccccccccHHHHhhhhhc
Confidence            34567899999999996 65 788888898863  689999889988888876    57655333322333221001112


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +.++|+|+.... . ..++.+.+.|+|+|+++.++
T Consensus        95 ~~g~d~v~d~~g-~-~~~~~~~~~l~~~G~iv~~G  127 (174)
T d1yb5a2          95 EKGIDIIIEMLA-N-VNLSKDLSLLSHGGRVIVVG  127 (174)
T ss_dssp             TTCEEEEEESCH-H-HHHHHHHHHEEEEEEEEECC
T ss_pred             cCCceEEeeccc-H-HHHHHHHhccCCCCEEEEEe
Confidence            256999775544 3 47899999999999999764

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=98.59  E-value=2.3e-08  Score=72.73  Aligned_cols=106  Identities=14%  Similarity=0.119  Sum_probs=74.5

Q ss_pred             HHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cccCCCCCCCC
Q 026506          101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPDEF  178 (237)
Q Consensus       101 ~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~  178 (237)
                      .+..+++||++||..|+|. |.+++++++.++ ...|+++|.+++.++.+++    +|.+..++.... +..........
T Consensus        21 ~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G-~~~vi~~~~~~~k~~~ak~----lGa~~~i~~~~~~~~~~~~~~~~~   95 (176)
T d2fzwa2          21 VNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAKE----FGATECINPQDFSKPIQEVLIEMT   95 (176)
T ss_dssp             HTTTCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHH----HTCSEEECGGGCSSCHHHHHHHHT
T ss_pred             HHhhCCCCCCEEEEecchhHHHHHHHHHHHHh-cCceEEEcccHHHHHHHHH----hCCcEEEeCCchhhHHHHHHHHHc
Confidence            4567899999999999998 777888888874 4789999999999999887    476542322111 11000111112


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEE
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                      .+++|+|+....... +++.+...+++||.++++
T Consensus        96 ~~g~D~vid~~G~~~-~~~~~~~~~~~g~~~~~v  128 (176)
T d2fzwa2          96 DGGVDYSFECIGNVK-VMRAALEACHKGWGVSVV  128 (176)
T ss_dssp             TSCBSEEEECSCCHH-HHHHHHHTBCTTTCEEEE
T ss_pred             CCCCcEeeecCCCHH-HHHHHHHhhcCCceeEEE
Confidence            367999887765544 889999999999887654

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.50  E-value=1.8e-07  Score=69.11  Aligned_cols=105  Identities=19%  Similarity=0.211  Sum_probs=65.0

Q ss_pred             CCCCEEEEEccCccHHH----HHHHHHhC---CCcEEEEEeCCHHHHHHHHHHH------------------HHcCCC--
Q 026506          107 VPGCLVLESGTGSGSLT----TSLARAVA---PTGHVYTFDFHEQRAASAREDF------------------ERTGVS--  159 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~----~~~~~~~~---~~~~v~~vD~~~~~~~~a~~~~------------------~~~~~~--  159 (237)
                      .+.-+|+++|||+|.-.    +.+.....   ...+++++|+++..++.|++..                  ...+..  
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            34469999999999743    33333322   1247999999999999997421                  000100  


Q ss_pred             ----------CcEEEEEccccCCCCCCCCCCCCCEEEEe-------CCChhchHHHHHhcccCCCEEEEEeC
Q 026506          160 ----------SFVTVGVRDIQGQGFPDEFSGLADSIFLD-------LPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       160 ----------~~i~~~~~d~~~~~~~~~~~~~~D~v~~~-------~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                                ..+.+...+......+.  .+.||+|++-       .+...++++++.+.|+|||.|+ ++.
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~-lG~  171 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQYNV--PGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLF-AGH  171 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCC--CCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEE-ECT
T ss_pred             ceeehHHHHHHHHHHhhhhccccccCC--CCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEE-Eec
Confidence                      11334444444322221  2679999862       1223468999999999999887 543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.47  E-value=3.1e-08  Score=71.45  Aligned_cols=105  Identities=19%  Similarity=0.203  Sum_probs=72.2

Q ss_pred             HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .+...+++|+++||..|+|+ |..+..+++.. + .++++++.+++.++.+++    +|.+..+.....|... .+....
T Consensus        19 al~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~-g-~~v~~~~~~~~r~~~~k~----~Ga~~~~~~~~~~~~~-~~~~~~   91 (168)
T d1rjwa2          19 ALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAM-G-LNVVAVDIGDEKLELAKE----LGADLVVNPLKEDAAK-FMKEKV   91 (168)
T ss_dssp             HHHHHTCCTTCEEEEECCSTTHHHHHHHHHHT-T-CEEEEECSCHHHHHHHHH----TTCSEEECTTTSCHHH-HHHHHH
T ss_pred             HHHHhCCCCCCEEEEeecccchhhhhHHHhcC-C-CeEeccCCCHHHhhhhhh----cCcceecccccchhhh-hccccc
Confidence            45667899999999999999 77777777775 3 589999999999998877    5654312211112111 011111


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                       ..+|.++.+... ...++.+.+.|+|+|++++++
T Consensus        92 -~~~~~~v~~~~~-~~~~~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2          92 -GGVHAAVVTAVS-KPAFQSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             -SSEEEEEESSCC-HHHHHHHHHHEEEEEEEEECC
T ss_pred             -CCCceEEeecCC-HHHHHHHHHHhccCCceEecc
Confidence             335555666655 458999999999999999664

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=98.47  E-value=6.8e-07  Score=67.37  Aligned_cols=125  Identities=14%  Similarity=0.138  Sum_probs=77.2

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      +.+...++++.+|+|+|||+|+++..++... +...+.++++--...+. -.....++. +.+.+...+-. ..++.   
T Consensus        58 ~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG~d~~e~-P~~~~~~~~-ni~~~~~~~dv-~~l~~---  130 (257)
T d2p41a1          58 FVERNLVTPEGKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHEE-PIPMSTYGW-NLVRLQSGVDV-FFIPP---  130 (257)
T ss_dssp             HHHTTSSCCCEEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSCC-CCCCCSTTG-GGEEEECSCCT-TTSCC---
T ss_pred             HHHhcCccCCCeEEEecCCCChHHHHHHhhc-CCCceeEEEecCccccC-Ccccccccc-ccccchhhhhH-HhcCC---
Confidence            4455567888999999999999998887663 33567777763211000 000000111 22444443322 22333   


Q ss_pred             CCCCEEEEeCCCh-----------hchHHHHHhcccCCCEEEEE--eCCHHHHHHHHHHHHhcCc
Q 026506          180 GLADSIFLDLPQP-----------WLAIPSAKKMLKQDGILCSF--SPCIEQVQRSCESLRLNFT  231 (237)
Q Consensus       180 ~~~D~v~~~~~~~-----------~~~l~~~~~~L~~gG~l~~~--~~~~~~~~~~~~~l~~~f~  231 (237)
                      ..+|+|++|+...           ..+++.+.+.|+|||-+++=  .|.....-+.++.++..|.
T Consensus       131 ~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~lq~~fg  195 (257)
T d2p41a1         131 ERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRKHG  195 (257)
T ss_dssp             CCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHHHC
T ss_pred             CcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHHHHHHhC
Confidence            7899999997531           14678888999999988744  5556677777777776554

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.41  E-value=2.3e-07  Score=70.22  Aligned_cols=101  Identities=13%  Similarity=0.023  Sum_probs=67.0

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCC-CCCCCCCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV---APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP-DEFSGLAD  183 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~~~D  183 (237)
                      .+.+|||+|++.|+.+..++..+   +..++++++|+++........     . ..++++..+|..+.... ......+|
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~-----~-~~~I~~i~gDs~~~~~~~~l~~~~~d  153 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-----D-MENITLHQGDCSDLTTFEHLREMAHP  153 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-----G-CTTEEEEECCSSCSGGGGGGSSSCSS
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc-----c-ccceeeeecccccHHHHHHHHhcCCC
Confidence            35799999999998887766543   567899999998754332211     1 24499999987652221 11124689


Q ss_pred             EEEEeCCChhc-hHH--HHHhcccCCCEEEEEeC
Q 026506          184 SIFLDLPQPWL-AIP--SAKKMLKQDGILCSFSP  214 (237)
Q Consensus       184 ~v~~~~~~~~~-~l~--~~~~~L~~gG~l~~~~~  214 (237)
                      .||+|...... .+.  ...+.|++||.+++-..
T Consensus       154 lIfID~~H~~~~v~~~~~~~~lLk~GG~iIveD~  187 (232)
T d2bm8a1         154 LIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDM  187 (232)
T ss_dssp             EEEEESSCSSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             EEEEcCCcchHHHHHHHHHhcccCcCCEEEEEcC
Confidence            99998764321 111  34589999999986554

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=8.6e-08  Score=69.85  Aligned_cols=104  Identities=15%  Similarity=0.126  Sum_probs=72.6

Q ss_pred             HhcCCCCCCEEEEEccCc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          102 MYLELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       102 ~~~~~~~~~~vldiG~G~--G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      +..++++|++||..|+++  |..+.++++..  ..+|++++.+++..+.+++    .|.+..++....|+.+.-.....+
T Consensus        22 ~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~--Ga~Vi~~~~s~~k~~~~~~----lGa~~vi~~~~~d~~~~v~~~t~g   95 (179)
T d1qora2          22 KTYEIKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALK----AGAWQVINYREEDLVERLKEITGG   95 (179)
T ss_dssp             TTSCCCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHTTT
T ss_pred             HHhCCCCCCEEEEEccccccchHHHHHHHHh--CCeEeecccchHHHHHHHh----cCCeEEEECCCCCHHHHHHHHhCC
Confidence            345789999999997765  66788888886  3689999999999999887    476543443333433210111123


Q ss_pred             CCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       180 ~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ..+|+|+... .. +.++.+.+.++++|+++++.
T Consensus        96 ~g~d~v~d~~-g~-~~~~~~~~~l~~~G~~v~~g  127 (179)
T d1qora2          96 KKVRVVYDSV-GR-DTWERSLDCLQRRGLMVSFG  127 (179)
T ss_dssp             CCEEEEEECS-CG-GGHHHHHHTEEEEEEEEECC
T ss_pred             CCeEEEEeCc-cH-HHHHHHHHHHhcCCeeeecc
Confidence            5789866544 33 37899999999999988664

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=98.39  E-value=1.6e-07  Score=68.07  Aligned_cols=104  Identities=13%  Similarity=0.103  Sum_probs=68.4

Q ss_pred             HHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc-CCCCCCCC
Q 026506          101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ-GQGFPDEF  178 (237)
Q Consensus       101 ~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~  178 (237)
                      .+..++++|++|+.+|+|+ |..+..+++.. ...+|+++|.++++++.+++    +|.+..++....+.. ........
T Consensus        21 ~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~-g~~~Vi~~~~~~~rl~~a~~----~GAd~~in~~~~~~~~~~~~~~~~   95 (175)
T d1cdoa2          21 VNTAKVEPGSTCAVFGLGAVGLAAVMGCHSA-GAKRIIAVDLNPDKFEKAKV----FGATDFVNPNDHSEPISQVLSKMT   95 (175)
T ss_dssp             HTTTCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHH----TTCCEEECGGGCSSCHHHHHHHHH
T ss_pred             HHhhCCCCCCEEEEEecCCccchHHHHHHHH-hhchheeecchHHHHHHHHH----cCCcEEEcCCCcchhHHHHHHhhc
Confidence            4567899999999999999 44555566655 45789999999999999887    576543332222111 00011112


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEE
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILC  210 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~  210 (237)
                      .+++|+++....... +++.+...+++||.++
T Consensus        96 ~~G~d~vid~~G~~~-~~~~a~~~~~~g~~~~  126 (175)
T d1cdoa2          96 NGGVDFSLECVGNVG-VMRNALESCLKGWGVS  126 (175)
T ss_dssp             TSCBSEEEECSCCHH-HHHHHHHTBCTTTCEE
T ss_pred             cCCcceeeeecCCHH-HHHHHHHHhhCCCcce
Confidence            257999887766544 6788888877765443

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=98.34  E-value=2.8e-07  Score=66.85  Aligned_cols=106  Identities=14%  Similarity=0.109  Sum_probs=69.7

Q ss_pred             HHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cccCCCCCCCC
Q 026506          101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPDEF  178 (237)
Q Consensus       101 ~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~  178 (237)
                      ....++++|++||.+|+|. |..+..+++.. ...+|+++|.++++.+.+++    .|....+..... |..........
T Consensus        21 ~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~-g~~~Vi~~~~~~~k~~~a~~----~Ga~~~i~~~~~~~~~~~~~~~~~   95 (176)
T d2jhfa2          21 VKVAKVTQGSTCAVFGLGGVGLSVIMGCKAA-GAARIIGVDINKDKFAKAKE----VGATECVNPQDYKKPIQEVLTEMS   95 (176)
T ss_dssp             HTTTCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHHT
T ss_pred             HHhhCCCCCCEEEEECCCCcHHHHHHHHHHc-CCceEEeecCcHHHHHHHHH----hCCeeEEecCCchhHHHHHHHHHh
Confidence            4567899999999999988 55666667765 44799999999999999988    464432211111 11100011122


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCC-EEEEE
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDG-ILCSF  212 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG-~l~~~  212 (237)
                      .+++|++|.....+. .++.+...++++| .+++.
T Consensus        96 ~~G~D~vid~~G~~~-~~~~a~~~~~~~~g~~~~~  129 (176)
T d2jhfa2          96 NGGVDFSFEVIGRLD-TMVTALSCCQEAYGVSVIV  129 (176)
T ss_dssp             TSCBSEEEECSCCHH-HHHHHHHHBCTTTCEEEEC
T ss_pred             cCCCCEEEecCCchh-HHHHHHHHHhcCCcceEEe
Confidence            367999877666554 7888888888875 44433

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=98.31  E-value=1.8e-07  Score=68.39  Aligned_cols=105  Identities=13%  Similarity=0.096  Sum_probs=73.5

Q ss_pred             HHhcCCCCCCEEEEEccCc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          101 IMYLELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       101 ~~~~~~~~~~~vldiG~G~--G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      .+..++++|++||..|+++  |..++++++..  ..+|+++..+++..+.+++    .|.+..+.....+..+.......
T Consensus        22 ~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~----~Ga~~vi~~~~~~~~~~~~~~~~   95 (182)
T d1v3va2          22 LEVCGVKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQ----IGFDAAFNYKTVNSLEEALKKAS   95 (182)
T ss_dssp             HTTTCCCSSCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTSCSCHHHHHHHHC
T ss_pred             HHHhCCCCCCEEEEEeCCCchhHHHHHHHHcc--CCEEEEeCCCHHHHHHHHh----hhhhhhcccccccHHHHHHHHhh
Confidence            3566789999999998866  56777888876  3689999999998888877    46554333222222211111122


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ..++|+|+-... . +.++...+.|+++|+++.++
T Consensus        96 ~~Gvd~v~D~vG-~-~~~~~~~~~l~~~G~~v~~G  128 (182)
T d1v3va2          96 PDGYDCYFDNVG-G-EFLNTVLSQMKDFGKIAICG  128 (182)
T ss_dssp             TTCEEEEEESSC-H-HHHHHHGGGEEEEEEEEECC
T ss_pred             cCCCceeEEecC-c-hhhhhhhhhccCCCeEEeec
Confidence            367999775554 3 48899999999999999876

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=98.30  E-value=2.2e-07  Score=67.26  Aligned_cols=100  Identities=18%  Similarity=0.172  Sum_probs=70.9

Q ss_pred             HHHhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE  177 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  177 (237)
                      .+...+++||++||..|+ |+ |..++++++..+  .++++++.+++..+.+++    .|.+..+++  .+... ...  
T Consensus        19 al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G--~~vi~~~~~~~~~~~~~~----lGa~~~i~~--~~~~~-~~~--   87 (171)
T d1iz0a2          19 ALKRAQARPGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRPEKLALPLA----LGAEEAATY--AEVPE-RAK--   87 (171)
T ss_dssp             HHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSGGGSHHHHH----TTCSEEEEG--GGHHH-HHH--
T ss_pred             HHHHhCCCCCCEEEEEeccccchhhhhhhhcccc--cccccccccccccccccc----cccceeeeh--hhhhh-hhh--
Confidence            456678999999999985 55 778888888863  689999999998888876    576543322  12111 111  


Q ss_pred             CCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       178 ~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ...++|+||-..+   ..++.+.+.|+|+|+++.++
T Consensus        88 ~~~g~D~v~d~~G---~~~~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2          88 AWGGLDLVLEVRG---KEVEESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             HTTSEEEEEECSC---TTHHHHHTTEEEEEEEEEC-
T ss_pred             ccccccccccccc---hhHHHHHHHHhcCCcEEEEe
Confidence            1257999775433   36789999999999999875

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.28  E-value=1.9e-07  Score=68.12  Aligned_cols=105  Identities=19%  Similarity=0.180  Sum_probs=72.1

Q ss_pred             HHhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          101 IMYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       101 ~~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      ....++++|++||..|+ |. |..++++++..+  .+++++..+++..+.+++    .|.+..+.....|+.+.......
T Consensus        18 ~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g--~~vi~~~~~~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~t~   91 (183)
T d1pqwa_          18 CEVGRLSPGERVLIHSATGGVGMAAVSIAKMIG--ARIYTTAGSDAKREMLSR----LGVEYVGDSRSVDFADEILELTD   91 (183)
T ss_dssp             HTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHT----TCCSEEEETTCSTHHHHHHHHTT
T ss_pred             HHHhCCCCCCEEEEECCCCCcccccchhhcccc--ccceeeeccccccccccc----ccccccccCCccCHHHHHHHHhC
Confidence            34557899999999874 55 888899998873  678888888888887776    56654232222233221001011


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +.++|+|+.....  +.++.+.+.|+++|+++.++
T Consensus        92 ~~g~d~v~d~~g~--~~~~~~~~~l~~~G~~v~~G  124 (183)
T d1pqwa_          92 GYGVDVVLNSLAG--EAIQRGVQILAPGGRFIELG  124 (183)
T ss_dssp             TCCEEEEEECCCT--HHHHHHHHTEEEEEEEEECS
T ss_pred             CCCEEEEEecccc--hHHHHHHHHhcCCCEEEEEc
Confidence            2579998866553  47899999999999999764

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=2.4e-07  Score=71.02  Aligned_cols=90  Identities=18%  Similarity=0.217  Sum_probs=67.1

Q ss_pred             HHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC
Q 026506           97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD  176 (237)
Q Consensus        97 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  176 (237)
                      +..++..+++.+++.|||||||+|.++..+++.   ..+++++|+++.+.+..++...   ...+++++.+|+.+.++..
T Consensus        10 ~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~---~~~~~~ii~~D~l~~~~~~   83 (252)
T d1qyra_          10 IDSIVSAINPQKGQAMVEIGPGLAALTEPVGER---LDQLTVIELDRDLAARLQTHPF---LGPKLTIYQQDAMTFNFGE   83 (252)
T ss_dssp             HHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT---CSCEEEECCCHHHHHHHHTCTT---TGGGEEEECSCGGGCCHHH
T ss_pred             HHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc---CCceEEEEeccchhHHHHHHhh---hccchhHHhhhhhhhcccc
Confidence            345788888999999999999999999999876   3689999999999999887432   2245999999998643322


Q ss_pred             CC--CCCCCEEEEeCCCh
Q 026506          177 EF--SGLADSIFLDLPQP  192 (237)
Q Consensus       177 ~~--~~~~D~v~~~~~~~  192 (237)
                      ..  .+..-.|+.|.|-.
T Consensus        84 ~~~~~~~~~~vvgNlPY~  101 (252)
T d1qyra_          84 LAEKMGQPLRVFGNLPYN  101 (252)
T ss_dssp             HHHHHTSCEEEEEECCTT
T ss_pred             cccccCCCeEEEecchHH
Confidence            10  01223667888754

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.17  E-value=1.4e-06  Score=63.09  Aligned_cols=103  Identities=11%  Similarity=-0.035  Sum_probs=71.5

Q ss_pred             hcCCCCCCEEEEEccCc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506          103 YLELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG  180 (237)
Q Consensus       103 ~~~~~~~~~vldiG~G~--G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  180 (237)
                      ....++|++||..|++.  |..++++++..  ..+|+++-.+++..+.+++    .|.+..++.. .+.. .......++
T Consensus        26 ~g~~~~g~~VLI~gaaGGVG~~aiQlak~~--Ga~Viat~~s~~k~~~~~~----lGa~~vi~~~-~~~~-~~~~~~~~~   97 (176)
T d1xa0a2          26 HGLTPERGPVLVTGATGGVGSLAVSMLAKR--GYTVEASTGKAAEHDYLRV----LGAKEVLARE-DVMA-ERIRPLDKQ   97 (176)
T ss_dssp             TTCCGGGCCEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCTTCHHHHHH----TTCSEEEECC-----------CCSC
T ss_pred             hCCCCCCCEEEEEeccchHHHHHHHHHHHc--CCceEEecCchHHHHHHHh----cccceeeecc-hhHH-HHHHHhhcc
Confidence            44677899999998655  67888888886  4689999999999988887    5765534322 1211 222222336


Q ss_pred             CCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCC
Q 026506          181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       181 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      ++|+|+-.....  .+....+.|++||+++.++..
T Consensus        98 gvD~vid~vgg~--~~~~~l~~l~~~Griv~~G~~  130 (176)
T d1xa0a2          98 RWAAAVDPVGGR--TLATVLSRMRYGGAVAVSGLT  130 (176)
T ss_dssp             CEEEEEECSTTT--THHHHHHTEEEEEEEEECSCC
T ss_pred             CcCEEEEcCCch--hHHHHHHHhCCCceEEEeecc
Confidence            899977665543  789999999999999977653

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.96  E-value=3e-06  Score=61.92  Aligned_cols=107  Identities=12%  Similarity=0.140  Sum_probs=68.7

Q ss_pred             HHhcCCCCC--CEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC
Q 026506          101 IMYLELVPG--CLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD  176 (237)
Q Consensus       101 ~~~~~~~~~--~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  176 (237)
                      ....++++|  ++||..|+ |. |..++++++.++. ..|+++..+++....+.+.   .+.+..++....|+.+ .+..
T Consensus        21 ~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga-~~vi~~~~~~e~~~~l~~~---~gad~vi~~~~~~~~~-~~~~   95 (187)
T d1vj1a2          21 QEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGC-SRVVGICGTQEKCLFLTSE---LGFDAAVNYKTGNVAE-QLRE   95 (187)
T ss_dssp             HHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTC-SEEEEEESSHHHHHHHHHH---SCCSEEEETTSSCHHH-HHHH
T ss_pred             HHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCC-cceecccchHHHHhhhhhc---ccceEEeeccchhHHH-HHHH
Confidence            345567776  78999984 55 8999999998743 5677777666555444332   5665434443333332 1111


Q ss_pred             CCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       177 ~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ....++|+|+-....  +.++...+.|+++|+++.++.
T Consensus        96 ~~~~GvDvv~D~vGg--~~~~~~~~~l~~~G~iv~~G~  131 (187)
T d1vj1a2          96 ACPGGVDVYFDNVGG--DISNTVISQMNENSHIILCGQ  131 (187)
T ss_dssp             HCTTCEEEEEESSCH--HHHHHHHTTEEEEEEEEEC--
T ss_pred             HhccCceEEEecCCc--hhHHHHhhhccccccEEEecc
Confidence            122579997755542  478999999999999997753

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.90  E-value=1.5e-05  Score=60.37  Aligned_cols=86  Identities=14%  Similarity=0.054  Sum_probs=63.1

Q ss_pred             HHHhcCCCCC--CEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC--------CCcEEEEEccc
Q 026506          100 VIMYLELVPG--CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV--------SSFVTVGVRDI  169 (237)
Q Consensus       100 ~~~~~~~~~~--~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--------~~~i~~~~~d~  169 (237)
                      +.+..+.+++  .+|||.-+|.|..+..++..   .++|+++|.++......++.+.+...        ..+++++.+|.
T Consensus        78 l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~---G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds  154 (250)
T d2oyra1          78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (250)
T ss_dssp             HHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred             HHHHhcCCCCCCCEEEECCCcccHHHHHHHhC---CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcH
Confidence            4555555554  48999999999999998876   37899999999988877776654321        13589999998


Q ss_pred             cCCCCCCCCCCCCCEEEEeCC
Q 026506          170 QGQGFPDEFSGLADSIFLDLP  190 (237)
Q Consensus       170 ~~~~~~~~~~~~~D~v~~~~~  190 (237)
                      .+  +.......||+|++|+.
T Consensus       155 ~~--~L~~~~~~~DvIYlDPM  173 (250)
T d2oyra1         155 LT--ALTDITPRPQVVYLDPM  173 (250)
T ss_dssp             HH--HSTTCSSCCSEEEECCC
T ss_pred             HH--HHhccCCCCCEEEECCC
Confidence            75  11111267999999985

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=97.84  E-value=2.4e-05  Score=55.88  Aligned_cols=100  Identities=13%  Similarity=0.077  Sum_probs=70.5

Q ss_pred             CCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCC
Q 026506          105 ELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA  182 (237)
Q Consensus       105 ~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  182 (237)
                      ...++.+||.-|+ |. |..++++++.++  .+|+++..+++..+.+++    .|.+..++  ..|..........++++
T Consensus        20 ~~~~~~~VLV~gaaGgVG~~avQlAk~~G--a~Viat~~s~~k~~~~~~----lGad~vi~--~~~~~~~~~~~~~~~gv   91 (167)
T d1tt7a2          20 LSPEKGSVLVTGATGGVGGIAVSMLNKRG--YDVVASTGNREAADYLKQ----LGASEVIS--REDVYDGTLKALSKQQW   91 (167)
T ss_dssp             CCGGGCCEEEESTTSHHHHHHHHHHHHHT--CCEEEEESSSSTHHHHHH----HTCSEEEE--HHHHCSSCCCSSCCCCE
T ss_pred             CCCCCCEEEEeCCcchHHHHHHHHHHHcC--CceEEEecCHHHHHHHHh----hcccceEe--ccchhchhhhcccCCCc
Confidence            3556778998885 33 788899999984  689999999888888877    47654222  23332222333334679


Q ss_pred             CEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          183 DSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       183 D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      |+|+-.....  .+++..+.|+++|++++++.
T Consensus        92 d~vid~vgg~--~~~~~~~~l~~~G~iv~~G~  121 (167)
T d1tt7a2          92 QGAVDPVGGK--QLASLLSKIQYGGSVAVSGL  121 (167)
T ss_dssp             EEEEESCCTH--HHHHHHTTEEEEEEEEECCC
T ss_pred             eEEEecCcHH--HHHHHHHHhccCceEEEeec
Confidence            9977665543  78999999999999997753

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=2.1e-06  Score=62.66  Aligned_cols=97  Identities=9%  Similarity=0.046  Sum_probs=53.9

Q ss_pred             CCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHh--hhcCCcc
Q 026506           13 TRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWT--LVLSHRT   89 (237)
Q Consensus        13 ~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~   89 (237)
                      ...|++||||++....+        |+.|..|+.|..+.|.-.... |.  ....|.+. |...|....+.  ...+...
T Consensus        82 v~~~~~GdrV~~~~~~~--------cg~c~~c~~G~~~~c~~~~~~-g~--~~~~G~~aey~~~~~~~~~~lP~~~~~~~  150 (185)
T d1pl8a1          82 VKHLKPGDRVAIEPGAP--------RENDEFCKMGRYNLSPSIFFC-AT--PPDDGNLCRFYKHNAAFCYKLPDNVKPLV  150 (185)
T ss_dssp             CCSCCTTCEEEECSEEC--------SSCCHHHHTTCGGGCTTCEET-TB--TTBCCSCBSEEEEEGGGEEECCTTCGGGE
T ss_pred             eeeecccccceecceec--------cccchhhccchhchhccceee-ec--ccccccceEEEEEchHHEEECCCCCCHHH
Confidence            45799999999977555        999999999987776532110 10  00122222 22222211111  0111222


Q ss_pred             cccccccHH-HHHHhcCCCCCCEEEEEccCccH
Q 026506           90 QILYIADIS-FVIMYLELVPGCLVLESGTGSGS  121 (237)
Q Consensus        90 ~~~~~~~~~-~~~~~~~~~~~~~vldiG~G~G~  121 (237)
                      ....+...+ ..+..+...+|++||. |||+|.
T Consensus       151 aa~~pl~~a~~a~~~~~~~~G~~VlI-g~GP~~  182 (185)
T d1pl8a1         151 THRFPLEKALEAFETFKKGLGLKIML-KCDPSD  182 (185)
T ss_dssp             EEEEEGGGHHHHHHHHHTTCCSEEEE-ECCTTC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCEEEE-EeCCCC
Confidence            223343332 3566777889999985 999973

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=97.60  E-value=1.3e-05  Score=58.55  Aligned_cols=108  Identities=11%  Similarity=0.178  Sum_probs=65.1

Q ss_pred             HhcCCCCCCEEEEEc--cCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC--CCC-
Q 026506          102 MYLELVPGCLVLESG--TGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFP-  175 (237)
Q Consensus       102 ~~~~~~~~~~vldiG--~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~-  175 (237)
                      ...+++||++++.+.  .|. |..++++++.++  .+++++-.+++..+...+.+...|.+..+.....|..+.  ... 
T Consensus        22 ~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~G--a~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~   99 (189)
T d1gu7a2          22 HYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLN--FNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKE   99 (189)
T ss_dssp             SSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHT--CEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHH
T ss_pred             HHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcC--CeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHH
Confidence            445789999888883  333 667788888873  567766444444444444445578765343322222210  000 


Q ss_pred             --CCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506          176 --DEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       176 --~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                        ...++++|+|+-... . ..++...+.|+++|+++.++
T Consensus       100 ~~~~~g~~vdvv~D~vg-~-~~~~~~~~~l~~~G~~v~~G  137 (189)
T d1gu7a2         100 WIKQSGGEAKLALNCVG-G-KSSTGIARKLNNNGLMLTYG  137 (189)
T ss_dssp             HHHHHTCCEEEEEESSC-H-HHHHHHHHTSCTTCEEEECC
T ss_pred             HHhhccCCceEEEECCC-c-chhhhhhhhhcCCcEEEEEC
Confidence              011256898774443 2 26788999999999999875

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.55  E-value=0.0001  Score=58.15  Aligned_cols=68  Identities=16%  Similarity=0.088  Sum_probs=53.1

Q ss_pred             HHHHhcCCC------CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC
Q 026506           99 FVIMYLELV------PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG  171 (237)
Q Consensus        99 ~~~~~~~~~------~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~  171 (237)
                      .+++.+++.      ..++|||+|+|+|.++..++.... ..+++++|.++...+..++.+.    ..++.++.+|+..
T Consensus        28 ~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~-~~~v~~iE~D~~~~~~L~~~~~----~~~~~ii~~D~l~  101 (322)
T d1i4wa_          28 KIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKFE----GSPLQILKRDPYD  101 (322)
T ss_dssp             HHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHTT----TSSCEEECSCTTC
T ss_pred             HHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHhcc----CCCcEEEeCchhh
Confidence            466655433      467999999999999999998753 3689999999999999887643    2348888888864

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.30  E-value=0.0011  Score=46.90  Aligned_cols=94  Identities=20%  Similarity=0.248  Sum_probs=61.4

Q ss_pred             EEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeC
Q 026506          111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDL  189 (237)
Q Consensus       111 ~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~  189 (237)
                      +|+.+|+|. |......+...+...+|+++|.+++.++.+++.    +..+   ....+...  ...   ...|+|++..
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~~~---~~~~~~~~--~~~---~~~dlIila~   70 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GIID---EGTTSIAK--VED---FSPDFVMLSS   70 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TSCS---EEESCGGG--GGG---TCCSEEEECS
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hcch---hhhhhhhh--hhc---cccccccccC
Confidence            589999998 554333334434557899999999999988873    4322   12222221  111   3589999988


Q ss_pred             CCh--hchHHHHHhcccCCCEEEEEeCCH
Q 026506          190 PQP--WLAIPSAKKMLKQDGILCSFSPCI  216 (237)
Q Consensus       190 ~~~--~~~l~~~~~~L~~gG~l~~~~~~~  216 (237)
                      |..  ...++.+.+.++++..+.-.+...
T Consensus        71 p~~~~~~vl~~l~~~~~~~~ii~d~~s~k   99 (171)
T d2g5ca2          71 PVRTFREIAKKLSYILSEDATVTDQGSVK   99 (171)
T ss_dssp             CHHHHHHHHHHHHHHSCTTCEEEECCSCC
T ss_pred             Cchhhhhhhhhhhcccccccccccccccc
Confidence            743  357888888999888777555443

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.26  E-value=0.00034  Score=49.26  Aligned_cols=93  Identities=17%  Similarity=0.209  Sum_probs=65.5

Q ss_pred             CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      ++.+|+.+|+|. |.-++..+..++  .+|+++|.+++.++..+......     ++....+-..  +.+. -..+|+|+
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lG--A~V~~~D~~~~~l~~l~~~~~~~-----~~~~~~~~~~--l~~~-~~~aDivI  100 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDINVERLSYLETLFGSR-----VELLYSNSAE--IETA-VAEADLLI  100 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHGGG-----SEEEECCHHH--HHHH-HHTCSEEE
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCC--CEEEEEeCcHHHHHHHHHhhccc-----ceeehhhhhh--HHHh-hccCcEEE
Confidence            468999999999 888888888873  78999999999999887764321     3333332211  1110 13589988


Q ss_pred             EeC-----CChhchHHHHHhcccCCCEEE
Q 026506          187 LDL-----PQPWLAIPSAKKMLKQDGILC  210 (237)
Q Consensus       187 ~~~-----~~~~~~l~~~~~~L~~gG~l~  210 (237)
                      -..     ..|.-.-++..+.||||..++
T Consensus       101 ~aalipG~~aP~lIt~~mv~~Mk~GSVIV  129 (168)
T d1pjca1         101 GAVLVPGRRAPILVPASLVEQMRTGSVIV  129 (168)
T ss_dssp             ECCCCTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred             EeeecCCcccCeeecHHHHhhcCCCcEEE
Confidence            543     233446788999999999998

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=0.00017  Score=51.74  Aligned_cols=97  Identities=10%  Similarity=0.071  Sum_probs=63.9

Q ss_pred             CCCCCEEEEEccCc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCC
Q 026506          106 LVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLAD  183 (237)
Q Consensus       106 ~~~~~~vldiG~G~--G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D  183 (237)
                      ..++++||..|+..  |..++++++.+  ..+|+++..+++..+.+++    .|.+..++....+.. ..+..   ..+|
T Consensus        29 ~~~~~~vlV~gasGGVG~~aiQlAk~~--Ga~Via~~~~~~k~~~~~~----lGad~vi~~~~~~~~-~~l~~---~~~~   98 (177)
T d1o89a2          29 RPQDGEIVVTGASGGVGSTAVALLHKL--GYQVVAVSGRESTHEYLKS----LGASRVLPRDEFAES-RPLEK---QVWA   98 (177)
T ss_dssp             CGGGCEEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHH----HTEEEEEEGGGSSSC-CSSCC---CCEE
T ss_pred             CCCCCcEEEEEccccchHHHHHHHHHc--CCCeEEEecchhHHHHHHh----hccccccccccHHHH-HHHHh---hcCC
Confidence            34455888876533  67888899887  3679999999998888876    465442322111111 12222   5578


Q ss_pred             EEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          184 SIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       184 ~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .++ |.-.. ..++...+.|+++|+++.++.
T Consensus        99 ~vv-D~Vgg-~~~~~~l~~l~~~Griv~~G~  127 (177)
T d1o89a2          99 GAI-DTVGD-KVLAKVLAQMNYGGCVAACGL  127 (177)
T ss_dssp             EEE-ESSCH-HHHHHHHHTEEEEEEEEECCC
T ss_pred             eeE-EEcch-HHHHHHHHHhccccceEeecc
Confidence            865 44332 378999999999999998753

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.11  E-value=0.0034  Score=43.89  Aligned_cols=96  Identities=15%  Similarity=0.124  Sum_probs=60.1

Q ss_pred             CEEEEEccCc-cHH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506          110 CLVLESGTGS-GSL-TTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL  187 (237)
Q Consensus       110 ~~vldiG~G~-G~~-~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~  187 (237)
                      ++|..||+|. |.. +..+. .  ...+|+++|.+++.++.+++    .+..+   ....+..  ..     ...|+|++
T Consensus         1 MkI~iIG~G~mG~~lA~~l~-~--~g~~V~~~d~~~~~~~~a~~----~~~~~---~~~~~~~--~~-----~~~DiIil   63 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLR-R--RGHYLIGVSRQQSTCEKAVE----RQLVD---EAGQDLS--LL-----QTAKIIFL   63 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-H--TTCEEEEECSCHHHHHHHHH----TTSCS---EEESCGG--GG-----TTCSEEEE
T ss_pred             CEEEEEeecHHHHHHHHHHH-H--CCCEEEEEECCchHHHHHHH----hhccc---eeeeecc--cc-----cccccccc
Confidence            4688899987 543 33333 3  24689999999998887766    34322   1112211  12     45899999


Q ss_pred             eCCCh--hchHHHHHhcccCCCEEEEEeCCHHHHHHH
Q 026506          188 DLPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRS  222 (237)
Q Consensus       188 ~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~  222 (237)
                      ..|..  .++++++...++++..++-.+.......+.
T Consensus        64 avp~~~~~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~  100 (165)
T d2f1ka2          64 CTPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEP  100 (165)
T ss_dssp             CSCHHHHHHHHHHHGGGSCTTCEEEECCSCCHHHHHH
T ss_pred             cCcHhhhhhhhhhhhhhcccccceeeccccchHHHHH
Confidence            87643  257888888888888877555443333333

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=96.96  E-value=0.00084  Score=50.52  Aligned_cols=88  Identities=19%  Similarity=0.135  Sum_probs=61.7

Q ss_pred             hcCCCCCCEEEEEccCccHHHHHHHHHhC---C------------------------------------CcEEEEEeCCH
Q 026506          103 YLELVPGCLVLESGTGSGSLTTSLARAVA---P------------------------------------TGHVYTFDFHE  143 (237)
Q Consensus       103 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~---~------------------------------------~~~v~~vD~~~  143 (237)
                      ......+..++|-.||+|++.+..+....   |                                    ...+++.|+++
T Consensus        45 l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~  124 (249)
T d1o9ga_          45 RLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYL  124 (249)
T ss_dssp             TSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred             hhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCH
Confidence            34455666899999999999887654210   0                                    12457788888


Q ss_pred             HHHHHH---HHHHHHcCCCCcEEEEEccccCCCC-CC-CCCCCCCEEEEeCC
Q 026506          144 QRAASA---REDFERTGVSSFVTVGVRDIQGQGF-PD-EFSGLADSIFLDLP  190 (237)
Q Consensus       144 ~~~~~a---~~~~~~~~~~~~i~~~~~d~~~~~~-~~-~~~~~~D~v~~~~~  190 (237)
                      .+++.|   ++|++..|+...+++...|+++... .. ......++|+.|+|
T Consensus       125 ~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPP  176 (249)
T d1o9ga_         125 EAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLP  176 (249)
T ss_dssp             HHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECC
T ss_pred             HHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCC
Confidence            888888   4688888988889999999875211 10 01145789999987

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.89  E-value=0.0011  Score=47.31  Aligned_cols=101  Identities=15%  Similarity=0.107  Sum_probs=61.4

Q ss_pred             CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC---CC--cEEEEEccccC--CCCCC---
Q 026506          108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV---SS--FVTVGVRDIQG--QGFPD---  176 (237)
Q Consensus       108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~--~i~~~~~d~~~--~~~~~---  176 (237)
                      ++.+|+.||+|. |..++..+..+  .++|+++|.++..++..++....+-.   ..  ..+...+...+  ..+..   
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~l--GA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~  105 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  105 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHH
Confidence            467999999999 77888888887  36999999999999888874321110   00  00000000000  00000   


Q ss_pred             ----CCCCCCCEEEEeC-----CChhchHHHHHhcccCCCEEE
Q 026506          177 ----EFSGLADSIFLDL-----PQPWLAIPSAKKMLKQDGILC  210 (237)
Q Consensus       177 ----~~~~~~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~  210 (237)
                          ..-...|+|+...     ..|.-.-+++.+.||||..++
T Consensus       106 ~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIV  148 (183)
T d1l7da1         106 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVII  148 (183)
T ss_dssp             HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred             HHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEE
Confidence                0013589988643     233446788999999999998

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.88  E-value=4.3e-05  Score=55.03  Aligned_cols=95  Identities=9%  Similarity=-0.016  Sum_probs=53.0

Q ss_pred             cCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhh--hcCC-
Q 026506           12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTL--VLSH-   87 (237)
Q Consensus        12 ~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~--~~~~-   87 (237)
                      -...||+||||++....+        |+.|..|..|..+.|.-.....+.   ...|+|. |...|....+..  .++. 
T Consensus        75 ~v~~~~~GdrV~~~~~~~--------~~~c~~c~~g~~~~c~~~~~~~~~---~~~G~~aey~~v~~~~~~~iP~~~~~~  143 (178)
T d1e3ja1          75 NVKHLKKGDRVAVEPGVP--------CRRCQFCKEGKYNLCPDLTFCATP---PDDGNLARYYVHAADFCHKLPDNCNVK  143 (178)
T ss_dssp             TCCSCCTTCEEEECCEEC--------CSSSHHHHTTCGGGCTTCEETTBT---TBCCSCBSEEEEEGGGEEECCTTCCCG
T ss_pred             ccCCCCCCCEEEECcccc--------cCCccccccCCccccccccceecc---ccccccceeeeecccceeeCCCCCCHH
Confidence            346799999999977555        899999999988777532211111   1234444 444443221111  1121 


Q ss_pred             ccccc-ccccHH-HHHHhcCCCCCCEEEEEcc
Q 026506           88 RTQIL-YIADIS-FVIMYLELVPGCLVLESGT  117 (237)
Q Consensus        88 ~~~~~-~~~~~~-~~~~~~~~~~~~~vldiG~  117 (237)
                      .+..+ .+...+ ..+..+++++|++|+.+|+
T Consensus       144 ~aa~~~~~~~ta~~a~~~~~~~~g~~VlVig~  175 (178)
T d1e3ja1         144 QLVTHSFKLEQTVDAFEAARKKADNTIKVMIS  175 (178)
T ss_dssp             GGEEEEEEGGGHHHHHHHHHHCCTTCSEEEEE
T ss_pred             HHHHHHhHHHHHHHHHHHhCCCCCCEEEEEcc
Confidence            12222 222222 2456777889999998864

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.87  E-value=0.00083  Score=50.52  Aligned_cols=51  Identities=20%  Similarity=0.180  Sum_probs=41.7

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE  154 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~  154 (237)
                      +++.. ..+|+.|||..+|+|..+.+....   ..+.+++|++++-++.|+++++
T Consensus       205 lI~~~-s~~gd~VlDpF~GSGTT~~aa~~~---~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         205 IIRAS-SNPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHH-CCTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHh-CCCCCEEEECCCCchHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHc
Confidence            44443 478999999999999998655544   4799999999999999999875

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.61  E-value=0.002  Score=49.02  Aligned_cols=53  Identities=17%  Similarity=0.104  Sum_probs=43.7

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT  156 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~  156 (237)
                      ++... ..+|+.|||..+|+|..+.+....   ..+.+++|+++...+.|++++...
T Consensus       200 ~I~~~-s~~gdiVLDpF~GSGTT~~Aa~~l---gR~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         200 LVRAL-SHPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             HHHHH-SCTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             HHHhh-cCCCCEEEecCCCCcHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHh
Confidence            44433 478999999999999998666655   479999999999999999998754

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.59  E-value=0.0012  Score=51.30  Aligned_cols=52  Identities=21%  Similarity=0.227  Sum_probs=42.2

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER  155 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~  155 (237)
                      ++... ..+|+.|||..||+|..+.+....   ..+.+++|++++.++.|++++..
T Consensus       243 lI~~~-s~~gdiVlDpF~GSGTT~~AA~~l---gR~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         243 FIRML-TEPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             HHHHH-CCTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGSC
T ss_pred             hhhhc-ccCCCEEEecCCCCcHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHHHh
Confidence            44433 468999999999999998665554   47999999999999999988654

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=96.51  E-value=0.029  Score=43.09  Aligned_cols=108  Identities=13%  Similarity=0.033  Sum_probs=70.3

Q ss_pred             CEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeC
Q 026506          110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDL  189 (237)
Q Consensus       110 ~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~  189 (237)
                      .+|+|+.||.|++...+-.. + -..++++|+++.+.+..+.|.   +  +  .+..+|+.+.....  ...+|+++..+
T Consensus         1 mk~~~lF~G~Gg~~~gl~~a-G-~~~~~a~e~d~~a~~~~~~N~---~--~--~~~~~Di~~~~~~~--~~~~dll~~g~   69 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKA-G-FRIICANEYDKSIWKTYESNH---S--A--KLIKGDISKISSDE--FPKCDGIIGGP   69 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHH-T-CEEEEEEECCHHHHHHHHHHC---C--S--EEEESCTTTSCGGG--SCCCSEEEECC
T ss_pred             CeEEEeCcCcCHHHHHHHHC-C-CEEEEEEeCCHHHHHHHHHHC---C--C--CCccCChhhCCHhH--cccccEEeecc
Confidence            37999999999998776554 3 356789999999998888763   2  2  34668887632222  25689998877


Q ss_pred             CChh------------------chHHHHHhcccCCCEEEEEeC------CHHHHHHHHHHHHh
Q 026506          190 PQPW------------------LAIPSAKKMLKQDGILCSFSP------CIEQVQRSCESLRL  228 (237)
Q Consensus       190 ~~~~------------------~~l~~~~~~L~~gG~l~~~~~------~~~~~~~~~~~l~~  228 (237)
                      |+..                  -.+-++.+.++|.-.++=.++      .......++..+.+
T Consensus        70 PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~Pk~~~lENV~~~~~~~~~~~~~~~l~~l~~  132 (324)
T d1dcta_          70 PCQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDN  132 (324)
T ss_dssp             CCTTTSSSSCCCCSSSHHHHHHHHHHHHHHHHCCSEEEEEEEGGGGSGGGHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccchHHHHHHHHHhhCCceeeccccccccccccchhhHHHHhHHhh
Confidence            6431                  123445667788766653343      23445666666655

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.013  Score=44.00  Aligned_cols=82  Identities=13%  Similarity=0.072  Sum_probs=55.4

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC------CCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFS  179 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~------~~~  179 (237)
                      ++.++|..|+++|. +..++..+ ....+|+.++.+++.++.+.+.+...+...++.++..|+.+.. ...      ...
T Consensus         9 k~Kv~lITGas~GI-G~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~   87 (257)
T d1xg5a_           9 RDRLALVTGASGGI-GAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH   87 (257)
T ss_dssp             TTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            47889999977653 33333332 2347899999999999998888877766556888899987511 100      012


Q ss_pred             CCCCEEEEeCC
Q 026506          180 GLADSIFLDLP  190 (237)
Q Consensus       180 ~~~D~v~~~~~  190 (237)
                      ++.|+++.+..
T Consensus        88 g~iD~lVnnAg   98 (257)
T d1xg5a_          88 SGVDICINNAG   98 (257)
T ss_dssp             CCCSEEEECCC
T ss_pred             CCCCEEEeccc
Confidence            57999887653

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=96.20  E-value=0.027  Score=43.54  Aligned_cols=112  Identities=12%  Similarity=0.137  Sum_probs=72.4

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      ..+.+|+|+.||.|++...+-.. + -..+.++|+++.+.+..+.|....        ..+|+.+.....  ...+|+++
T Consensus         9 ~~~lrv~~lFsG~Gg~~~gl~~a-G-~~~v~a~e~d~~a~~~~~~N~~~~--------~~~Di~~~~~~~--~~~~Dll~   76 (327)
T d2c7pa1           9 LTGLRFIDLFAGLGGFRLALESC-G-AECVYSNEWDKYAQEVYEMNFGEK--------PEGDITQVNEKT--IPDHDILC   76 (327)
T ss_dssp             TTTCEEEEETCTTTHHHHHHHHT-T-CEEEEEECCCHHHHHHHHHHHSCC--------CBSCGGGSCGGG--SCCCSEEE
T ss_pred             CCCCeEEEECccccHHHHHHHHC-C-CeEEEEEeCCHHHHHHHHHHCCCC--------CcCchhcCchhh--cceeeeee
Confidence            35789999999999998776543 3 356788999999999998885311        236766522222  25699998


Q ss_pred             EeCCChh------------------chHHHHHhcccCCCEEEEEeCCH------HHHHHHHHHHHh-cC
Q 026506          187 LDLPQPW------------------LAIPSAKKMLKQDGILCSFSPCI------EQVQRSCESLRL-NF  230 (237)
Q Consensus       187 ~~~~~~~------------------~~l~~~~~~L~~gG~l~~~~~~~------~~~~~~~~~l~~-~f  230 (237)
                      ..+|+..                  ..+-++.+.++|.=.++=-++..      ..++.++..|++ |+
T Consensus        77 ggpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~kP~~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY  145 (327)
T d2c7pa1          77 AGFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDY  145 (327)
T ss_dssp             EECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTB
T ss_pred             cccccchhhhhhhhcCCcccchhHHHHHHHHHhccCCcEEecccchhhhhhccchhhHHhhhHHHhcCC
Confidence            8776431                  12344556678875555333322      235666777776 54

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.18  E-value=0.00073  Score=48.30  Aligned_cols=35  Identities=26%  Similarity=0.196  Sum_probs=29.9

Q ss_pred             cCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeecccc
Q 026506           12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDW   54 (237)
Q Consensus        12 ~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   54 (237)
                      ....||+||||++.+..+        ||+|.+|+.|...+|..
T Consensus        71 ~v~~~~vGdrV~v~~~~~--------cg~c~~C~~g~~~~c~~  105 (177)
T d1jqba1          71 EVKDFKPGDRVIVPCTTP--------DWRSLEVQAGFQQHSNG  105 (177)
T ss_dssp             TCCSCCTTCEEEECSCCC--------CSSSHHHHTTCGGGTTS
T ss_pred             ccceecCCCcEEEeeeec--------cccccchhhhhhccccc
Confidence            346799999999988777        99999999998888763

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.09  E-value=0.0082  Score=42.38  Aligned_cols=114  Identities=13%  Similarity=0.081  Sum_probs=62.5

Q ss_pred             CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC-CCCcEEEEE-ccccCCCCCCCCCCCCCEEE
Q 026506          110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG-VSSFVTVGV-RDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~i~~~~-~d~~~~~~~~~~~~~~D~v~  186 (237)
                      .+|..+|+|. |......+...  ...|+.+|.+++.++..++.-.... ... .+... .........+ .-..+|+|+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~e-~~~~aD~ii   77 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPG-LAGTAHPDLLTSDIGL-AVKDADVIL   77 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEESSS-CCEEECCSEEESCHHH-HHTTCSEEE
T ss_pred             CEEEEECccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCCCchhhhh-hhhhhhhhhhhhhhHh-HhcCCCEEE
Confidence            5789999999 54444444443  3689999999998887766421000 000 00000 0000000110 014589999


Q ss_pred             EeCCCh--hchHHHHHhcccCCCEEEEEeCCH-HHHHHHHHHHHh
Q 026506          187 LDLPQP--WLAIPSAKKMLKQDGILCSFSPCI-EQVQRSCESLRL  228 (237)
Q Consensus       187 ~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~-~~~~~~~~~l~~  228 (237)
                      +..+..  ...++++.+.++++-.++ ..+.. .......+.++.
T Consensus        78 i~v~~~~~~~~~~~i~~~l~~~~~iv-~~~g~~~~~~~~~~~~~~  121 (184)
T d1bg6a2          78 IVVPAIHHASIAANIASYISEGQLII-LNPGATGGALEFRKILRE  121 (184)
T ss_dssp             ECSCGGGHHHHHHHHGGGCCTTCEEE-ESSCCSSHHHHHHHHHHH
T ss_pred             EEEchhHHHHHHHHhhhccCCCCEEE-EeCCCCccHHHHHHHHHH
Confidence            877644  357888888999888665 44322 223344445544

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.95  E-value=0.00027  Score=51.49  Aligned_cols=32  Identities=16%  Similarity=0.053  Sum_probs=25.7

Q ss_pred             CCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccc
Q 026506           13 TRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSD   53 (237)
Q Consensus        13 ~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   53 (237)
                      ...|++||||+.. ..+        ||.|..|+.|..+.|+
T Consensus        75 v~~~~vGDrVv~~-~~~--------Cg~C~~C~~g~~~~C~  106 (194)
T d1f8fa1          75 VTELQVGDHVVLS-YGY--------CGKCTQCNTGNPAYCS  106 (194)
T ss_dssp             CCSCCTTCEEEEC-CCC--------CSSSHHHHTTCGGGCT
T ss_pred             ceeEccCceeeee-ccc--------ccCChhhhCCCccccc
Confidence            4679999999554 445        9999999999877765

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.73  E-value=0.057  Score=35.83  Aligned_cols=91  Identities=12%  Similarity=0.001  Sum_probs=55.1

Q ss_pred             CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCC-CCCCCCCCEEEE
Q 026506          110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP-DEFSGLADSIFL  187 (237)
Q Consensus       110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~~~D~v~~  187 (237)
                      ++|+.+|+|. |......+...  ...|+++|.+++.++.+++.   .+    ..+..+|..+.... ...-..+|.++.
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~--g~~v~vid~d~~~~~~~~~~---~~----~~vi~Gd~~~~~~l~~~~i~~a~~vv~   71 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEK--GHDIVLIDIDKDICKKASAE---ID----ALVINGDCTKIKTLEDAGIEDADMYIA   71 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHH---CS----SEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCCcceecCChhhhhhhhhh---hh----hhhccCcccchhhhhhcChhhhhhhcc
Confidence            4788888876 54444333332  36899999999999877653   22    56788888762211 111146898887


Q ss_pred             eCCChhc--hHHHHHhcccCCCEE
Q 026506          188 DLPQPWL--AIPSAKKMLKQDGIL  209 (237)
Q Consensus       188 ~~~~~~~--~l~~~~~~L~~gG~l  209 (237)
                      -.++...  ......+.+.+.-.+
T Consensus        72 ~t~~d~~N~~~~~~~k~~~~~~iI   95 (132)
T d1lssa_          72 VTGKEEVNLMSSLLAKSYGINKTI   95 (132)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCCCEE
T ss_pred             cCCcHHHHHHHHHHHHHcCCceEE
Confidence            6555432  234444566666444

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.62  E-value=0.00048  Score=49.62  Aligned_cols=31  Identities=13%  Similarity=0.146  Sum_probs=25.4

Q ss_pred             CCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeec
Q 026506           13 TRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKH   51 (237)
Q Consensus        13 ~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~   51 (237)
                      ...+++||||++....+        ||.|..|+.|...+
T Consensus        82 ~~~~~~Gd~V~~~~~~~--------Cg~C~~C~~g~~~~  112 (184)
T d1vj0a1          82 GELLKPGDLIVWNRGIT--------CGECYWCKVSKEPY  112 (184)
T ss_dssp             SCBCCTTCEEEECSEEC--------CSSSHHHHTSCCGG
T ss_pred             cccccceeeeEeccccc--------cccChhHhCccccc
Confidence            46789999999988556        99999999887443

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.44  E-value=0.017  Score=43.75  Aligned_cols=104  Identities=16%  Similarity=0.144  Sum_probs=68.2

Q ss_pred             CCEEEEEccCccHHHHHHHHHh-C-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CC---C---CCC
Q 026506          109 GCLVLESGTGSGSLTTSLARAV-A-PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FP---D---EFS  179 (237)
Q Consensus       109 ~~~vldiG~G~G~~~~~~~~~~-~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~---~---~~~  179 (237)
                      |.+|.-|-.|+++++..+++.+ . ...+|+.++.+++.++.+.+.+...+.  .+.+...|+.+.. ..   .   ...
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dvs~~~sv~~~~~~~~~~~   79 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRKEY   79 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEEecCCHHHHHHHHHHHHHhc
Confidence            5677555445555555555433 1 246899999999999998888876653  3678888886511 00   0   012


Q ss_pred             CCCCEEEEeCCCh------------------------hchHHHHHhcccCCCEEEEEeC
Q 026506          180 GLADSIFLDLPQP------------------------WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       180 ~~~D~v~~~~~~~------------------------~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ++.|+++.|..-.                        ..+.+.+.+.|+++|+++.++.
T Consensus        80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS  138 (275)
T d1wmaa1          80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  138 (275)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence            5799988775411                        1356777888999999887664

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=95.35  E-value=0.049  Score=40.80  Aligned_cols=80  Identities=18%  Similarity=0.338  Sum_probs=52.4

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC--------CCCCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--------FPDEF  178 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~  178 (237)
                      .|.++|..|++.| ++..++..+ ....+|+.+|.+++.++.+.+.+...+  ....+...|+.+..        .....
T Consensus         7 ~GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d2ae2a_           7 EGCTALVTGGSRG-IGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHF   83 (259)
T ss_dssp             TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHHh
Confidence            5788998887654 444444333 224789999999999988888776655  34777888886510        01112


Q ss_pred             CCCCCEEEEeCC
Q 026506          179 SGLADSIFLDLP  190 (237)
Q Consensus       179 ~~~~D~v~~~~~  190 (237)
                      +++.|+++.+..
T Consensus        84 ~~~idilvnnAG   95 (259)
T d2ae2a_          84 HGKLNILVNNAG   95 (259)
T ss_dssp             TTCCCEEEECCC
T ss_pred             CCCceEEEECCc
Confidence            246899887653

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.30  E-value=0.026  Score=36.57  Aligned_cols=89  Identities=11%  Similarity=0.015  Sum_probs=54.1

Q ss_pred             CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeC--CHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDF--HEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~--~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      .|.+||.+|.|. |.--...+...  +++++.++.  +++..+.+.+        ..+.+....+....+     ..+++
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~--ga~v~v~~~~~~~~~~~~~~~--------~~i~~~~~~~~~~dl-----~~~~l   75 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEA--GARLTVNALTFIPQFTVWANE--------GMLTLVEGPFDETLL-----DSCWL   75 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHT--TBEEEEEESSCCHHHHHHHTT--------TSCEEEESSCCGGGG-----TTCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCChHHHHHHhc--------CCceeeccCCCHHHh-----CCCcE
Confidence            478999999998 43333333332  366776654  4444433322        226667666654333     45899


Q ss_pred             EEEeCCChhchHHHHHhcccCCCEEEEE
Q 026506          185 IFLDLPQPWLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       185 v~~~~~~~~~~l~~~~~~L~~gG~l~~~  212 (237)
                      |+....+.. .-+++.+..++.|+++-.
T Consensus        76 v~~at~d~~-~n~~i~~~a~~~~ilVNv  102 (113)
T d1pjqa1          76 AIAATDDDT-VNQRVSDAAESRRIFCNV  102 (113)
T ss_dssp             EEECCSCHH-HHHHHHHHHHHTTCEEEE
T ss_pred             EeecCCCHH-HHHHHHHHHHHcCCEEEe
Confidence            887766553 556777888888888743

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.13  E-value=0.13  Score=38.04  Aligned_cols=80  Identities=13%  Similarity=0.171  Sum_probs=53.6

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC------CCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFS  179 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~------~~~  179 (237)
                      .+..+|..|++ ++++..++..+ ....+|+.+|.+++.++.+.+.++..+  ..+.....|+.+.. ...      ...
T Consensus         9 enKvalITGas-~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~   85 (251)
T d2c07a1           9 ENKVALVTGAG-RGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTEH   85 (251)
T ss_dssp             SSCEEEEESTT-SHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            46677777765 45666666654 334799999999999998888877655  33788888987511 100      112


Q ss_pred             CCCCEEEEeCC
Q 026506          180 GLADSIFLDLP  190 (237)
Q Consensus       180 ~~~D~v~~~~~  190 (237)
                      ++.|+++.+..
T Consensus        86 g~iDilvnnag   96 (251)
T d2c07a1          86 KNVDILVNNAG   96 (251)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCceeeeeccc
Confidence            67999887653

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.12  E-value=0.0035  Score=45.59  Aligned_cols=33  Identities=15%  Similarity=-0.100  Sum_probs=26.8

Q ss_pred             cCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeecc
Q 026506           12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS   52 (237)
Q Consensus        12 ~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~   52 (237)
                      ....||+||||++....+        ||.|..|+.|..+.+
T Consensus        78 ~V~~~~vGdrV~v~~~~~--------Cg~C~~C~~g~~~~~  110 (201)
T d1kola1          78 DVENLQIGDLVSVPFNVA--------CGRCRSCKEMHTGVC  110 (201)
T ss_dssp             TCCSCCTTCEEECCSEEC--------CSSSHHHHTTCGGGC
T ss_pred             ccccccccceeEEeeeee--------ccCChhhhCCCcccc
Confidence            457899999999877445        999999999976554

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=95.08  E-value=0.053  Score=40.61  Aligned_cols=79  Identities=16%  Similarity=0.195  Sum_probs=51.8

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC------CCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFS  179 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~------~~~  179 (237)
                      .|.++|..|+++| ++..++..+ ....+|+.+|.+++.++.+.+.+...+  .++.....|+.+.. ...      ..-
T Consensus         4 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (260)
T d1zema1           4 NGKVCLVTGAGGN-IGLATALRLAEEGTAIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRDF   80 (260)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            5788898887654 333333332 234789999999999998888877655  33778888887511 000      011


Q ss_pred             CCCCEEEEeC
Q 026506          180 GLADSIFLDL  189 (237)
Q Consensus       180 ~~~D~v~~~~  189 (237)
                      +..|+++.+.
T Consensus        81 g~iDilVnna   90 (260)
T d1zema1          81 GKIDFLFNNA   90 (260)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCeehhhh
Confidence            5799988654

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=94.99  E-value=0.04  Score=36.62  Aligned_cols=97  Identities=6%  Similarity=-0.070  Sum_probs=57.1

Q ss_pred             EEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC-CCCCCCCEEEEe
Q 026506          111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-EFSGLADSIFLD  188 (237)
Q Consensus       111 ~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~~~~D~v~~~  188 (237)
                      +++.+|+|. |......+...  ...|+++|.+++.++.++.    .+    .....+|..+..... ..-..+|.+++.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~--g~~vvvid~d~~~~~~~~~----~~----~~~~~gd~~~~~~l~~a~i~~a~~vi~~   71 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRM--GHEVLAVDINEEKVNAYAS----YA----THAVIANATEENELLSLGIRNFEYVIVA   71 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT--TCCCEEEESCHHHHHHTTT----TC----SEEEECCTTCTTHHHHHTGGGCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHC--CCeEEEecCcHHHHHHHHH----hC----CcceeeecccchhhhccCCccccEEEEE
Confidence            467778876 55444444442  3679999999999887754    23    345668876522211 111468988887


Q ss_pred             CCChhc--hHHHHHhcccCCCEEEEEeCCHH
Q 026506          189 LPQPWL--AIPSAKKMLKQDGILCSFSPCIE  217 (237)
Q Consensus       189 ~~~~~~--~l~~~~~~L~~gG~l~~~~~~~~  217 (237)
                      .++...  .+....+.+.+...++.-.....
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~iiar~~~~~  102 (134)
T d2hmva1          72 IGANIQASTLTTLLLKELDIPNIWVKAQNYY  102 (134)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCSEEEEECCSHH
T ss_pred             cCchHHhHHHHHHHHHHcCCCcEEeecccHh
Confidence            765432  23334444556667765555443

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.80  E-value=0.058  Score=40.38  Aligned_cols=80  Identities=19%  Similarity=0.189  Sum_probs=52.2

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-C-------CCCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-F-------PDEF  178 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~-------~~~~  178 (237)
                      .|.++|..|+++| ++..++..+ ....+|+.++.+++.++.+.+.+...+.  .+.....|+.+.. .       ....
T Consensus         7 kgK~alVTGas~G-IG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d1xq1a_           7 KAKTVLVTGGTKG-IGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF--QVTGSVCDASLRPEREKLMQTVSSMF   83 (259)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEeccCCCHHHHHHHHHHHHHHh
Confidence            4788888887654 344443332 2347899999999998888887766552  3788888886511 0       0111


Q ss_pred             CCCCCEEEEeCC
Q 026506          179 SGLADSIFLDLP  190 (237)
Q Consensus       179 ~~~~D~v~~~~~  190 (237)
                      .+..|+++.+..
T Consensus        84 ~g~idilvnnAG   95 (259)
T d1xq1a_          84 GGKLDILINNLG   95 (259)
T ss_dssp             TTCCSEEEEECC
T ss_pred             CCCccccccccc
Confidence            256899887654

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=94.59  E-value=0.072  Score=42.47  Aligned_cols=53  Identities=9%  Similarity=0.100  Sum_probs=44.2

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHcCC
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAVAP-TGHVYTFDFHEQRAASAREDFERTGV  158 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~  158 (237)
                      +.++..++|+|+-.|..+..++..... ..+|+++|+++...+..++++..+..
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD  263 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence            567889999999999998887776533 36899999999999999999876653

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=94.47  E-value=0.29  Score=32.99  Aligned_cols=85  Identities=16%  Similarity=0.258  Sum_probs=52.5

Q ss_pred             CEEEEEccCc-cH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506          110 CLVLESGTGS-GS-LTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL  187 (237)
Q Consensus       110 ~~vldiG~G~-G~-~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~  187 (237)
                      ++|.-||+|. |. ++..+.+. + ..++++.|.+++.++...+.   .+    +... .|..  ..     ...|+||+
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~-~-~~~i~v~~r~~~~~~~l~~~---~~----~~~~-~~~~--~v-----~~~Div~l   63 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQ-G-GYRIYIANRGAEKRERLEKE---LG----VETS-ATLP--EL-----HSDDVLIL   63 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-C-SCEEEEECSSHHHHHHHHHH---TC----CEEE-SSCC--CC-----CTTSEEEE
T ss_pred             CEEEEEcCcHHHHHHHHHHHHC-C-CCcEEEEeCChhHHHHhhhh---cc----cccc-cccc--cc-----cccceEEE
Confidence            3678888887 54 33334443 3 36899999999888776553   33    2222 2221  12     34799998


Q ss_pred             eCCChhchHHHHHhcccCCCEEEEEe
Q 026506          188 DLPQPWLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       188 ~~~~~~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ..+ |. .++.+.+.+++.+.+++..
T Consensus        64 avk-P~-~~~~v~~~l~~~~~~viS~   87 (152)
T d1yqga2          64 AVK-PQ-DMEAACKNIRTNGALVLSV   87 (152)
T ss_dssp             CSC-HH-HHHHHHTTCCCTTCEEEEC
T ss_pred             ecC-HH-HHHHhHHHHhhcccEEeec
Confidence            876 33 5667777777777766443

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.28  E-value=0.0088  Score=42.09  Aligned_cols=33  Identities=21%  Similarity=0.322  Sum_probs=28.2

Q ss_pred             CCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccc
Q 026506           13 TRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSD   53 (237)
Q Consensus        13 ~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   53 (237)
                      ...+++||||++....+        ||.|..|+.|..++|.
T Consensus        76 v~~~~~GdrV~~~~~~~--------cg~~~~c~~g~~~~c~  108 (171)
T d1h2ba1          76 VEGLEKGDPVILHPAVT--------DGTCLACRAGEDMHCE  108 (171)
T ss_dssp             CCSCCTTCEEEECSCBC--------CSCSHHHHTTCGGGCT
T ss_pred             CCcCCCCCEEEEcCccC--------CCCccccccccccccc
Confidence            45799999999988666        8999999999888775

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.12  E-value=0.13  Score=38.15  Aligned_cols=103  Identities=16%  Similarity=0.165  Sum_probs=62.5

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEEEccccCCC-CCC------CC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFE-RTGVSSFVTVGVRDIQGQG-FPD------EF  178 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~i~~~~~d~~~~~-~~~------~~  178 (237)
                      .|.++|..|++.| ++..++..+ ....+|+.+|.+++.++.+.+.+. ..+  ..+.....|+.+.. ...      ..
T Consensus         4 ~gK~~lITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (251)
T d1vl8a_           4 RGRVALVTGGSRG-LGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAVKEK   80 (251)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            4788899887654 444444332 234789999999988777665543 344  33777888886511 000      01


Q ss_pred             CCCCCEEEEeCCCh------------------------hchHHHHHhccc--CCCEEEEEe
Q 026506          179 SGLADSIFLDLPQP------------------------WLAIPSAKKMLK--QDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~~~~~------------------------~~~l~~~~~~L~--~gG~l~~~~  213 (237)
                      -++.|+++.+....                        ..+.+.+.+.|+  .+|.++.++
T Consensus        81 ~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~  141 (251)
T d1vl8a_          81 FGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIG  141 (251)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEEC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccc
Confidence            15799988765311                        124666677774  456777664

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.03  E-value=0.12  Score=35.07  Aligned_cols=99  Identities=9%  Similarity=-0.121  Sum_probs=56.5

Q ss_pred             CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCC-CCCCCCCCCEEEE
Q 026506          110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF-PDEFSGLADSIFL  187 (237)
Q Consensus       110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~~D~v~~  187 (237)
                      ..|+.+|+|. |......+...  ...++.+|.+++......+.....+    +.+..+|..+... ....-..+|.+++
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~--~~~v~vId~d~~~~~~~~~~~~~~~----~~vi~Gd~~d~~~L~~a~i~~a~~vi~   77 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQR--GQNVTVISNLPEDDIKQLEQRLGDN----ADVIPGDSNDSSVLKKAGIDRCRAILA   77 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHCTT----CEEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHc--CCCEEEEeccchhHHHHHHHhhcCC----cEEEEccCcchHHHHHhccccCCEEEE
Confidence            4688888876 44443333332  3678899998875443333322222    7788899876211 1111256899888


Q ss_pred             eCCChhch--HHHHHhcccCCCEEEEEeC
Q 026506          188 DLPQPWLA--IPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       188 ~~~~~~~~--l~~~~~~L~~gG~l~~~~~  214 (237)
                      ..++....  .....+.+.|.-.+++...
T Consensus        78 ~~~~d~~n~~~~~~~r~~~~~~~iia~~~  106 (153)
T d1id1a_          78 LSDNDADNAFVVLSAKDMSSDVKTVLAVS  106 (153)
T ss_dssp             CSSCHHHHHHHHHHHHHHTSSSCEEEECS
T ss_pred             ccccHHHHHHHHHHHHHhCCCCceEEEEc
Confidence            77655432  2333455567766665443

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=94.02  E-value=0.13  Score=35.35  Aligned_cols=105  Identities=10%  Similarity=-0.027  Sum_probs=59.4

Q ss_pred             CEEEEEccCc-cHH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506          110 CLVLESGTGS-GSL-TTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL  187 (237)
Q Consensus       110 ~~vldiG~G~-G~~-~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~  187 (237)
                      .+|..+|||. |.. ........ +...++++|.+++..+...+.   .+...    ...|..+  +.+   ..+|+|++
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~-~~~~~~~~d~~~~~~~~~~~~---~~~~~----~~~~~~~--ll~---~~iD~V~I   68 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQW-PDIELVLCTRNPKVLGTLATR---YRVSA----TCTDYRD--VLQ---YGVDAVMI   68 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTS-TTEEEEEECSCHHHHHHHHHH---TTCCC----CCSSTTG--GGG---GCCSEEEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhC-CCcEEEEEECCHHHHHHHHHh---ccccc----ccccHHH--hcc---cccceecc
Confidence            3688899986 422 22233332 456778899998877766554   34322    1234332  112   45899988


Q ss_pred             eCCChhchHHHHHhcccCCCEEEEEe---CCHHHHHHHHHHHHh
Q 026506          188 DLPQPWLAIPSAKKMLKQDGILCSFS---PCIEQVQRSCESLRL  228 (237)
Q Consensus       188 ~~~~~~~~l~~~~~~L~~gG~l~~~~---~~~~~~~~~~~~l~~  228 (237)
                      ..|... -.+.+..+|+.|=-+++--   .+..+..++.+..++
T Consensus        69 ~tp~~~-H~~~~~~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~  111 (167)
T d1xeaa1          69 HAATDV-HSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEK  111 (167)
T ss_dssp             CSCGGG-HHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHH
T ss_pred             cccccc-cccccccccccccccccCCCCcCCHHHHHHHHHHHHH
Confidence            776543 4555666666654444432   334555666665554

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.88  E-value=0.026  Score=43.83  Aligned_cols=76  Identities=18%  Similarity=0.174  Sum_probs=49.0

Q ss_pred             CCEEEEEccCccHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506          109 GCLVLESGTGSGSLTTSLARAVAPT-GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL  187 (237)
Q Consensus       109 ~~~vldiG~G~G~~~~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~  187 (237)
                      ..+|+|+.||.|++...+-.. +-. ..++++|+++.+.+..+.|.   +  + ..+...|+.+..........+|+++.
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~a~~~~~~n~---~--~-~~~~~~di~~~~~~~~~~~~~Dll~g   74 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNF---P--H-TQLLAKTIEGITLEEFDRLSFDMILM   74 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHC---T--T-SCEECSCGGGCCHHHHHHHCCSEEEE
T ss_pred             CCEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHHHHHHHHHHC---C--C-CCcccCchhhCCHhHcCCCCccEEEe
Confidence            358999999999988766444 322 34789999999999888763   2  2 33455666542221111136899887


Q ss_pred             eCCC
Q 026506          188 DLPQ  191 (237)
Q Consensus       188 ~~~~  191 (237)
                      .+|+
T Consensus        75 gpPC   78 (343)
T d1g55a_          75 SPPC   78 (343)
T ss_dssp             CCC-
T ss_pred             eccc
Confidence            7664

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=93.83  E-value=0.089  Score=34.63  Aligned_cols=99  Identities=11%  Similarity=0.064  Sum_probs=63.5

Q ss_pred             EEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCCCCCCCCCEEEEeCC
Q 026506          112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLADSIFLDLP  190 (237)
Q Consensus       112 vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~~D~v~~~~~  190 (237)
                      ++.+  |.|..+..+++.+. ...+..+|.+++..+.++.    .+    +.+..+|..+.. +....-..++.+++..+
T Consensus         3 ivI~--G~g~~g~~l~~~L~-~~~i~vi~~d~~~~~~~~~----~~----~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~   71 (129)
T d2fy8a1           3 VVIC--GWSESTLECLRELR-GSEVFVLAEDENVRKKVLR----SG----ANFVHGDPTRVSDLEKANVRGARAVIVNLE   71 (129)
T ss_dssp             EEEE--SCCHHHHHHHHTSC-GGGEEEEESCTTHHHHHHH----TT----CEEEESCTTSHHHHHHTTCTTCSEEEECCS
T ss_pred             EEEE--CCCHHHHHHHHHHc-CCCCEEEEcchHHHHHHHh----cC----ccccccccCCHHHHHHhhhhcCcEEEEecc
Confidence            4554  45667777777764 3568899999998877654    23    677889987621 11111256889888776


Q ss_pred             Chhc--hHHHHHhcccCCCEEEEEeCCHHHHHH
Q 026506          191 QPWL--AIPSAKKMLKQDGILCSFSPCIEQVQR  221 (237)
Q Consensus       191 ~~~~--~l~~~~~~L~~gG~l~~~~~~~~~~~~  221 (237)
                      +...  .+....+.+.|...+++........+.
T Consensus        72 ~d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~  104 (129)
T d2fy8a1          72 SDSETIHCILGIRKIDESVRIIAEAERYENIEQ  104 (129)
T ss_dssp             SHHHHHHHHHHHHHHCSSSCEEEECSSGGGHHH
T ss_pred             chhhhHHHHHHHHHHCCCceEEEEEcCHHHHHH
Confidence            5542  344556678888888877654444333

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.90  E-value=0.31  Score=33.50  Aligned_cols=92  Identities=15%  Similarity=0.213  Sum_probs=59.9

Q ss_pred             CCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          106 LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       106 ~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      .-.|.+++.+|-|. |.-....++.+  ..+|+++|++|...-.|..    .|    .++.  ... ...     ...|+
T Consensus        21 ~l~Gk~v~V~GyG~iG~g~A~~~rg~--G~~V~v~e~dp~~al~A~~----dG----~~v~--~~~-~a~-----~~adi   82 (163)
T d1li4a1          21 MIAGKVAVVAGYGDVGKGCAQALRGF--GARVIITEIDPINALQAAM----EG----YEVT--TMD-EAC-----QEGNI   82 (163)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TT----CEEC--CHH-HHT-----TTCSE
T ss_pred             eecCCEEEEeccccccHHHHHHHHhC--CCeeEeeecccchhHHhhc----Cc----eEee--ehh-hhh-----hhccE
Confidence            45789999999988 55555555554  4799999999854333322    23    2222  111 111     34788


Q ss_pred             EEEeCCChhchHHHHHhcccCCCEEEEEeCC
Q 026506          185 IFLDLPQPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       185 v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      ++.........-.+-.+.||+|.+|.-.+.+
T Consensus        83 vvtaTGn~~vI~~eh~~~MKdgaIL~N~Ghf  113 (163)
T d1li4a1          83 FVTTTGCIDIILGRHFEQMKDDAIVCNIGHF  113 (163)
T ss_dssp             EEECSSCSCSBCHHHHTTCCTTEEEEECSSS
T ss_pred             EEecCCCccchhHHHHHhccCCeEEEEeccc
Confidence            8887776655667778899999888855543

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.81  E-value=0.29  Score=36.49  Aligned_cols=103  Identities=17%  Similarity=0.166  Sum_probs=64.2

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCC-HHHHHHHHHHHHHcCCCCcEEEEEccccCC-CCCC------CC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFH-EQRAASAREDFERTGVSSFVTVGVRDIQGQ-GFPD------EF  178 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~------~~  178 (237)
                      .|.++|..|++.| ++..+++.+ ....+|+..+.+ ++.++.+.+.+...+  ..+.+...|+.+. ....      ..
T Consensus        17 ~gK~~lITGas~G-IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~   93 (272)
T d1g0oa_          17 EGKVALVTGAGRG-IGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKI   93 (272)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhC--CceeeEeCCCCCHHHHHHHHHHHHHH
Confidence            4788888887654 344444332 224689888876 566676666666655  3377888888651 1100      01


Q ss_pred             CCCCCEEEEeCCCh------------------------hchHHHHHhcccCCCEEEEEe
Q 026506          179 SGLADSIFLDLPQP------------------------WLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~~~~~------------------------~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      .+..|+++.+....                        +...+.+.+.|+.+|.+++++
T Consensus        94 ~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~  152 (272)
T d1g0oa_          94 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG  152 (272)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             hCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence            25789988654311                        235777888888898887664

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.74  E-value=0.17  Score=35.32  Aligned_cols=108  Identities=9%  Similarity=0.111  Sum_probs=61.7

Q ss_pred             EEEEEccCc-cHHHHHHHHHhCCCcEEEEE-eCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506          111 LVLESGTGS-GSLTTSLARAVAPTGHVYTF-DFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD  188 (237)
Q Consensus       111 ~vldiG~G~-G~~~~~~~~~~~~~~~v~~v-D~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~  188 (237)
                      +|..+|||. |..-....... +..+++++ |.+++..+...+   ..+......+ ..|..+ -+..   ..+|+|++.
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~-~~~~i~ai~d~~~~~~~~~~~---~~~~~~~~~~-~~~~~~-ll~~---~~iD~v~I~   73 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLA-PNATISGVASRSLEKAKAFAT---ANNYPESTKI-HGSYES-LLED---PEIDALYVP   73 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHC-TTEEEEEEECSSHHHHHHHHH---HTTCCTTCEE-ESSHHH-HHHC---TTCCEEEEC
T ss_pred             EEEEEcCCHHHHHHHHHHHhC-CCCEEEEEEeCCccccccchh---ccccccceee-cCcHHH-hhhc---cccceeeec
Confidence            688899997 55444444443 45677754 888876655433   3454332222 234332 1122   458999987


Q ss_pred             CCChhchHHHHHhcccCCCEEEEEeC---CHHHHHHHHHHHHh
Q 026506          189 LPQPWLAIPSAKKMLKQDGILCSFSP---CIEQVQRSCESLRL  228 (237)
Q Consensus       189 ~~~~~~~l~~~~~~L~~gG~l~~~~~---~~~~~~~~~~~l~~  228 (237)
                      .|... -++.+..+|+.|=-+++--|   ...+.+++.+..++
T Consensus        74 tp~~~-h~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~  115 (184)
T d1ydwa1          74 LPTSL-HVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEA  115 (184)
T ss_dssp             CCGGG-HHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHT
T ss_pred             ccchh-hcchhhhhhhccceeecccccccCHHHHHHHHHHHHh
Confidence            76543 56667777776655544333   34556666666655

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=92.67  E-value=0.47  Score=34.73  Aligned_cols=101  Identities=13%  Similarity=0.157  Sum_probs=61.1

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC------CCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFS  179 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~------~~~  179 (237)
                      .|.++|..|++.| ++..++..+ ....+|+.+|.+++.++...+.+.     .+......|+.+.. ...      ..-
T Consensus         3 ~gK~alITGas~G-IG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   76 (243)
T d1q7ba_           3 EGKIALVTGASRG-IGRAIAETLAARGAKVIGTATSENGAQAISDYLG-----ANGKGLMLNVTDPASIESVLEKIRAEF   76 (243)
T ss_dssp             TTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecCHHHhhhhhhhhhccc
Confidence            4678888886654 444444333 234789999999988887766542     23667778886510 000      012


Q ss_pred             CCCCEEEEeCCCh------------------------hchHHHHHhcc--cCCCEEEEEeC
Q 026506          180 GLADSIFLDLPQP------------------------WLAIPSAKKML--KQDGILCSFSP  214 (237)
Q Consensus       180 ~~~D~v~~~~~~~------------------------~~~l~~~~~~L--~~gG~l~~~~~  214 (237)
                      ++.|+++.+....                        ..+.+.+.+.|  +.+|.++.++.
T Consensus        77 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS  137 (243)
T d1q7ba_          77 GEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGS  137 (243)
T ss_dssp             CSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecc
Confidence            5799988664311                        12456666666  35788887754

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=92.52  E-value=0.13  Score=30.67  Aligned_cols=47  Identities=13%  Similarity=0.050  Sum_probs=37.4

Q ss_pred             hcCCCCCCEEEEEccCc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026506          103 YLELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASARE  151 (237)
Q Consensus       103 ~~~~~~~~~vldiG~G~--G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~  151 (237)
                      ....+++++||..|+..  |..++++++.+  ..+|+++-.+++..+.+++
T Consensus        26 ~~~~~~~~~vlI~gasGgVG~~aiQlak~~--G~~Vi~~t~s~~k~~~~~~   74 (77)
T d1o8ca2          26 AGVRPQDGEIVVTGASGGVGSTAVALLHKL--GYQVVAVSGRESTHEYLKS   74 (77)
T ss_dssp             TTCCGGGCEEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHH
T ss_pred             hhhccCCCcEEEEeCCCcHHHHHHHHHHHc--CCeEEEEECCHHHHHHHHH
Confidence            34567899999987644  67888888886  3689999999998888876

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.45  E-value=0.0078  Score=43.31  Aligned_cols=33  Identities=12%  Similarity=-0.113  Sum_probs=25.8

Q ss_pred             CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccc
Q 026506           14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSD   53 (237)
Q Consensus        14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   53 (237)
                      ..+|+||||.+....       ..|+.|..|+.|..+.|.
T Consensus        83 ~~~k~GdrV~~~~~~-------~~c~~c~~c~~g~~~~C~  115 (192)
T d1piwa1          83 SGLKVGQRVGVGAQV-------FSCLECDRCKNDNEPYCT  115 (192)
T ss_dssp             SSCCTTCEEEECSEE-------ECCSCSHHHHTTCGGGCT
T ss_pred             cccCCCCeeeEeeec-------cCCCCchhhhcCCccccc
Confidence            568999999885421       128999999999888876

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=92.32  E-value=0.02  Score=41.25  Aligned_cols=35  Identities=20%  Similarity=0.172  Sum_probs=29.6

Q ss_pred             ccCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccc
Q 026506           11 SFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSD   53 (237)
Q Consensus        11 ~~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   53 (237)
                      +....+++||||++....+        |+.|..|+.|..+.|+
T Consensus        78 ~~v~~~~~GdrV~~~~~~~--------Cg~c~~c~~g~~~~C~  112 (198)
T d1p0fa1          78 AGVTCVKPGDKVIPLFVPQ--------CGSCRACKSSNSNFCE  112 (198)
T ss_dssp             TTCCSCCTTCEEEECSSCC--------CSSSHHHHCTTCCCCT
T ss_pred             cccccCcCCCEEEEEeecc--------ccccccccccccccch
Confidence            3466799999999988777        8999999999888775

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.32  E-value=0.77  Score=35.09  Aligned_cols=102  Identities=17%  Similarity=0.196  Sum_probs=64.7

Q ss_pred             HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      ..+++..+...++..+|+|. +...........+-.++...+.+++..+...+.+...+..    ... +.. ...    
T Consensus       116 a~~~la~~~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~----~~~-~~~-~a~----  185 (320)
T d1omoa_         116 AAKYLARKNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGIS----ASV-QPA-EEA----  185 (320)
T ss_dssp             HHHHHSCTTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCC----EEE-CCH-HHH----
T ss_pred             HHHHhccCCccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCc----ccc-chh-hhh----
Confidence            45566666667899999998 6655555555556689999999999888877777655432    221 111 111    


Q ss_pred             CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506          179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                       ...|+|+...+....++..  +.++||-.+..++.
T Consensus       186 -~~aDiV~taT~s~~P~~~~--~~l~~G~hv~~iGs  218 (320)
T d1omoa_         186 -SRCDVLVTTTPSRKPVVKA--EWVEEGTHINAIGA  218 (320)
T ss_dssp             -TSSSEEEECCCCSSCCBCG--GGCCTTCEEEECSC
T ss_pred             -ccccEEEEeccCcccccch--hhcCCCCeEeecCC
Confidence             3479988766654444432  35777777665543

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=92.31  E-value=0.28  Score=36.42  Aligned_cols=79  Identities=18%  Similarity=0.244  Sum_probs=52.1

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC--------CCCCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--------FPDEF  178 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~  178 (237)
                      .|.++|..|+.. +++..++..+ ....+|+.++.+++.++.+.+.+...+  ....+...|+.+..        .....
T Consensus         5 ~gK~alITGas~-GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~--~~~~~~~~D~s~~~~~~~~~~~~~~~~   81 (258)
T d1ae1a_           5 KGTTALVTGGSK-GIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHVF   81 (258)
T ss_dssp             TTCEEEEESCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeecCCHHHHHHHHHHHHHHh
Confidence            578999998765 4444444332 234789999999999888888777666  33777888887611        11122


Q ss_pred             CCCCCEEEEeC
Q 026506          179 SGLADSIFLDL  189 (237)
Q Consensus       179 ~~~~D~v~~~~  189 (237)
                      .+..|+++.+.
T Consensus        82 ~g~idilinna   92 (258)
T d1ae1a_          82 DGKLNILVNNA   92 (258)
T ss_dssp             TSCCCEEEECC
T ss_pred             CCCcEEEeccc
Confidence            35688877654

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.19  E-value=0.015  Score=40.86  Aligned_cols=35  Identities=17%  Similarity=-0.073  Sum_probs=25.9

Q ss_pred             cCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccc
Q 026506           12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSD   53 (237)
Q Consensus        12 ~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   53 (237)
                      ....+++||||.+...       ...|+.|..|..|....|.
T Consensus        78 ~v~~~~~GdrV~~~~~-------~~~~g~~~~~~~g~~~~~~  112 (175)
T d1llua1          78 GVTRVKEGDRVGIPWL-------YTACGCCEHCLTGWETLCE  112 (175)
T ss_dssp             TCCSCCTTCEEEECSE-------EECCSSSHHHHTTCGGGCT
T ss_pred             CccccccCCEEEeccc-------cccCCccccccCCcccccc
Confidence            3567999999987431       1238889999999877765

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.94  E-value=0.5  Score=34.60  Aligned_cols=73  Identities=18%  Similarity=0.216  Sum_probs=46.6

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC-----CCCCCCCCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-----GFPDEFSGL  181 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~~~  181 (237)
                      .|.++|..|+++| ++.++++.+ ....+|+.+|.+++.++.+.+..   +  + +.....|+.+.     .+..  -++
T Consensus         6 ~GK~~lITGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~---~--~-~~~~~~Dv~d~~~v~~~~~~--~g~   76 (244)
T d1pr9a_           6 AGRRVLVTGAGKG-IGRGTVQALHATGARVVAVSRTQADLDSLVREC---P--G-IEPVCVDLGDWEATERALGS--VGP   76 (244)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS---T--T-CEEEECCTTCHHHHHHHHTT--CCC
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc---C--C-CeEEEEeCCCHHHHHHHHHH--hCC
Confidence            5789999987654 444444433 23478999999998877665532   2  3 56677787651     1111  167


Q ss_pred             CCEEEEeC
Q 026506          182 ADSIFLDL  189 (237)
Q Consensus       182 ~D~v~~~~  189 (237)
                      .|+++.+.
T Consensus        77 iDilVnnA   84 (244)
T d1pr9a_          77 VDLLVNNA   84 (244)
T ss_dssp             CCEEEECC
T ss_pred             ceEEEecc
Confidence            99988764

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=91.85  E-value=0.024  Score=40.75  Aligned_cols=35  Identities=9%  Similarity=-0.130  Sum_probs=29.4

Q ss_pred             ccCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccc
Q 026506           11 SFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSD   53 (237)
Q Consensus        11 ~~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   53 (237)
                      +....|++||||++....+        |+.|..|+.|..+.|+
T Consensus        79 ~~v~~~~~GdrV~~~~~~~--------cg~c~~C~~g~~~~C~  113 (199)
T d1cdoa1          79 PGVTEFQPGEKVIPLFISQ--------CGECRFCQSPKTNQCV  113 (199)
T ss_dssp             TTCCSCCTTCEEEECSSCC--------CSSSHHHHCTTCCCCS
T ss_pred             CCCceecCCCEEEEeeecc--------ccccccccCCCccccc
Confidence            3457899999999988777        8999999988887775

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.82  E-value=0.019  Score=40.43  Aligned_cols=35  Identities=23%  Similarity=0.245  Sum_probs=28.9

Q ss_pred             cCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeecccc
Q 026506           12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDW   54 (237)
Q Consensus        12 ~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   54 (237)
                      ....|++||||.+....+        |+.|..|+.|..+.|+.
T Consensus        80 ~v~~~~~GdrV~~~~~~~--------c~~c~~~~~g~~~~c~~  114 (177)
T d1jvba1          80 EVVGYSKGDLVAVNPWQG--------EGNCYYCRIGEEHLCDS  114 (177)
T ss_dssp             TCCSCCTTCEEEECCEEC--------CSSSHHHHTTCGGGCSS
T ss_pred             CccccccCceEeeeeccc--------cccccccccccccccCC
Confidence            456799999999987555        99999999998877763

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=91.56  E-value=0.51  Score=34.76  Aligned_cols=100  Identities=12%  Similarity=0.182  Sum_probs=60.2

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC-CCCC------CCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GFPD------EFS  179 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~------~~~  179 (237)
                      .|.++|..|++. +++..++..+ ....+|+.+|.+++.++.+.+.+   +  .+..+...|+.+. ....      ...
T Consensus         5 ~gK~alITGas~-GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~   78 (253)
T d1hxha_           5 QGKVALVTGGAS-GVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---G--ERSMFVRHDVSSEADWTLVMAAVQRRL   78 (253)
T ss_dssp             TTCEEEETTTTS-HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---C--TTEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C--CCeEEEEeecCCHHHHHHHHHHHHHHh
Confidence            577888888655 4444444433 23478999999998887766543   3  3366777787651 0000      011


Q ss_pred             CCCCEEEEeCCCh------------------------hchHHHHHhccc-CCCEEEEEe
Q 026506          180 GLADSIFLDLPQP------------------------WLAIPSAKKMLK-QDGILCSFS  213 (237)
Q Consensus       180 ~~~D~v~~~~~~~------------------------~~~l~~~~~~L~-~gG~l~~~~  213 (237)
                      +..|+++.+....                        ....+.+.+.|+ .+|.++.++
T Consensus        79 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~is  137 (253)
T d1hxha_          79 GTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMA  137 (253)
T ss_dssp             CSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             CCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceeccc
Confidence            5789988765311                        123556666665 578888665

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=91.52  E-value=0.31  Score=36.12  Aligned_cols=80  Identities=18%  Similarity=0.206  Sum_probs=47.6

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCC-HHHHHHHHHHHHH-cCCCCcEEEEEccccCCC-CCC------C
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFH-EQRAASAREDFER-TGVSSFVTVGVRDIQGQG-FPD------E  177 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~-~~~~~~a~~~~~~-~~~~~~i~~~~~d~~~~~-~~~------~  177 (237)
                      .|.++|..|++.| ++..++..+ ....+|+.++.+ ++.++.+.+.+.. .+  .++.+...|+.+.. ...      .
T Consensus         3 ~gK~alITGas~G-IG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (260)
T d1x1ta1           3 KGKVAVVTGSTSG-IGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHG--VKVLYDGADLSKGEAVRGLVDNAVR   79 (260)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHT--SCEEEECCCTTSHHHHHHHHHHHHH
T ss_pred             CcCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            4678887776654 444444332 234689999986 5667766665543 34  33778888887611 110      0


Q ss_pred             CCCCCCEEEEeCC
Q 026506          178 FSGLADSIFLDLP  190 (237)
Q Consensus       178 ~~~~~D~v~~~~~  190 (237)
                      .-++.|+++.+..
T Consensus        80 ~~G~iDiLVnnAG   92 (260)
T d1x1ta1          80 QMGRIDILVNNAG   92 (260)
T ss_dssp             HHSCCSEEEECCC
T ss_pred             HhCCCcEEEeecc
Confidence            1157999887653

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.48  E-value=0.59  Score=34.23  Aligned_cols=80  Identities=16%  Similarity=0.144  Sum_probs=52.9

Q ss_pred             CCCEEEEEccCccHHHHHHHHH-hCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC-CCCC------CCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARA-VAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GFPD------EFS  179 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~-~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~------~~~  179 (237)
                      .|.++|.-|++.|.- ..++.. .....+|+.+|.+++.++...+.+...+  .++.....|+.+. ....      ...
T Consensus         6 ~Gkv~lITGas~GIG-~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~~   82 (244)
T d1yb1a_           6 TGEIVLITGAGHGIG-RLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAEI   82 (244)
T ss_dssp             TTCEEEEETTTSHHH-HHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            578888888877532 222222 1234789999999999998888887655  3488888998761 1110      012


Q ss_pred             CCCCEEEEeCC
Q 026506          180 GLADSIFLDLP  190 (237)
Q Consensus       180 ~~~D~v~~~~~  190 (237)
                      +..|+++.+..
T Consensus        83 g~idilinnag   93 (244)
T d1yb1a_          83 GDVSILVNNAG   93 (244)
T ss_dssp             CCCSEEEECCC
T ss_pred             CCCceeEeecc
Confidence            67999887654

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=91.44  E-value=0.18  Score=36.50  Aligned_cols=110  Identities=13%  Similarity=0.088  Sum_probs=58.2

Q ss_pred             CEEEEEccCccHH--HHHHHHHhCCCcEEE-EEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          110 CLVLESGTGSGSL--TTSLARAVAPTGHVY-TFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       110 ~~vldiG~G~G~~--~~~~~~~~~~~~~v~-~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      -+|-.||||.-..  ........ +..+++ .+|.+++..+...+.   .+++..-...-.|+.+ -+..   ..+|+|+
T Consensus        34 iriaiIG~G~~~~~~~~~~~~~~-~~~~ivav~d~~~~~a~~~~~~---~~i~~~~~~~~~d~~e-ll~~---~~iD~V~  105 (221)
T d1h6da1          34 FGYAIVGLGKYALNQILPGFAGC-QHSRIEALVSGNAEKAKIVAAE---YGVDPRKIYDYSNFDK-IAKD---PKIDAVY  105 (221)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTC-SSEEEEEEECSCHHHHHHHHHH---TTCCGGGEECSSSGGG-GGGC---TTCCEEE
T ss_pred             EEEEEEcCcHHHHHHHHHHHHhC-CCceEEEEecCCHHHHHHHHHh---hccccccccccCchhh-hccc---ccceeee
Confidence            4899999986322  11222222 335565 569998877665443   4544311112234332 2222   5689999


Q ss_pred             EeCCChhchHHHHHhcccCCCEEEEEe---CCHHHHHHHHHHHHh
Q 026506          187 LDLPQPWLAIPSAKKMLKQDGILCSFS---PCIEQVQRSCESLRL  228 (237)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~~gG~l~~~~---~~~~~~~~~~~~l~~  228 (237)
                      +..+... -.+.+.++|+.|=-+++--   .+.++..++.+..++
T Consensus       106 I~tp~~~-H~~~~~~al~~gk~v~~EKPla~~~~e~~~l~~~a~~  149 (221)
T d1h6da1         106 IILPNSL-HAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKA  149 (221)
T ss_dssp             ECSCGGG-HHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHH
T ss_pred             eccchhh-hhhHHHHhhhcchhhhcCCCccCCHHHHHHHHHHHHh
Confidence            8777543 3455666666554444332   334555555555554

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=91.34  E-value=1.3  Score=30.75  Aligned_cols=75  Identities=23%  Similarity=0.188  Sum_probs=44.9

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCH-------------------HHHHHHHHHHHHcCCCCcEEEEEc
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHE-------------------QRAASAREDFERTGVSSFVTVGVR  167 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~i~~~~~  167 (237)
                      ..+.+|+.+|+|+.+++.+..... ...+|+.+|-++                   +.++...+.++..+    +++...
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~-~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~g----V~i~l~  115 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAA-RGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTG----VTLKLN  115 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHT-TTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHT----CEEEES
T ss_pred             CCCcEEEEECccHHHHHHHHHHHh-hccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCC----eEEEeC
Confidence            456899999999977665554433 247899999643                   23344455555555    444433


Q ss_pred             cccCCCCCCCCCCCCCEEEEeCC
Q 026506          168 DIQGQGFPDEFSGLADSIFLDLP  190 (237)
Q Consensus       168 d~~~~~~~~~~~~~~D~v~~~~~  190 (237)
                      ......    ....||.|++...
T Consensus       116 ~~Vt~~----~~~~~d~vilAtG  134 (179)
T d1ps9a3         116 HTVTAD----QLQAFDETILASG  134 (179)
T ss_dssp             CCCCSS----SSCCSSEEEECCC
T ss_pred             CEEccc----ccccceeEEEeec
Confidence            222111    1257999987654

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=91.31  E-value=0.23  Score=36.79  Aligned_cols=105  Identities=14%  Similarity=0.169  Sum_probs=65.3

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHh-CCCcEEEE-EeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC-CCCC------
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAV-APTGHVYT-FDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GFPD------  176 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~-vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~------  176 (237)
                      +-.|.++|..|++ ++++.+++..+ ....+|+. ...+++..+.+.+.+...+.  ++.....|+.+. ....      
T Consensus         3 ~L~GK~alITGas-~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~   79 (259)
T d1ja9a_           3 PLAGKVALTTGAG-RGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA--QGVAIQADISKPSEVVALFDKAV   79 (259)
T ss_dssp             TTTTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCC--CceEecCCCCCHHHHHHHHHHHH
Confidence            3468899988854 55555555443 22356765 46677778888888777663  377888888651 0100      


Q ss_pred             CCCCCCCEEEEeCCCh------------------------hchHHHHHhcccCCCEEEEEe
Q 026506          177 EFSGLADSIFLDLPQP------------------------WLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       177 ~~~~~~D~v~~~~~~~------------------------~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      ...+..|+++.+....                        ..+.+.+.+.|+.+|.++++.
T Consensus        80 ~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~  140 (259)
T d1ja9a_          80 SHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTS  140 (259)
T ss_dssp             HHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccc
Confidence            0125689888654311                        135677778888888777664

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.29  E-value=0.28  Score=34.68  Aligned_cols=96  Identities=18%  Similarity=0.145  Sum_probs=60.0

Q ss_pred             CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-------CCC--------------CcEEEEEc
Q 026506          110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-------GVS--------------SFVTVGVR  167 (237)
Q Consensus       110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-------~~~--------------~~i~~~~~  167 (237)
                      .+|..+|+|. |.-...++..  .+..|+.+|.+++.++.++++++..       +..              .++... .
T Consensus         5 kkvaViGaG~mG~~iA~~~a~--~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~-~   81 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAA--TGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-T   81 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-S
T ss_pred             EEEEEECcCHHHHHHHHHHHh--CCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcccc-c
Confidence            4889999998 5433333333  2478999999999988887765431       211              012221 1


Q ss_pred             cccCCCCCCCCCCCCCEEEEeCCChh----chHHHHHhcccCCCEEEEEeC
Q 026506          168 DIQGQGFPDEFSGLADSIFLDLPQPW----LAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       168 d~~~~~~~~~~~~~~D~v~~~~~~~~----~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      |.. ..+     ...|+|+...+...    ++++++.+.++++..+...++
T Consensus        82 d~~-~a~-----~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS  126 (192)
T d1f0ya2          82 DAA-SVV-----HSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTS  126 (192)
T ss_dssp             CHH-HHT-----TSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCS
T ss_pred             hhH-hhh-----cccceehhhcccchhHHHHHHHHHhhhcccCceeeccCc
Confidence            211 111     45899998887653    567788888888877774443

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=91.09  E-value=1.4  Score=33.53  Aligned_cols=83  Identities=22%  Similarity=0.196  Sum_probs=52.4

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      +.+|.+||..|+ +|.++.++++.+ ..+.+|+++..+....+..++............+..+|+.+.......-...|.
T Consensus         8 ~~~gk~VlVTG~-sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   86 (342)
T d1y1pa1           8 LPEGSLVLVTGA-NGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAG   86 (342)
T ss_dssp             SCTTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred             CCCcCEEEEECC-CCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchh
Confidence            467899999984 588887776654 223688888878777666665554444444355677888752221111245788


Q ss_pred             EEEeC
Q 026506          185 IFLDL  189 (237)
Q Consensus       185 v~~~~  189 (237)
                      |+...
T Consensus        87 v~~~a   91 (342)
T d1y1pa1          87 VAHIA   91 (342)
T ss_dssp             EEECC
T ss_pred             hhhhc
Confidence            77543

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.01  E-value=0.26  Score=34.65  Aligned_cols=80  Identities=13%  Similarity=0.020  Sum_probs=45.7

Q ss_pred             CCCCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC-CCCCCCCCCCCC
Q 026506          106 LVPGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGFPDEFSGLAD  183 (237)
Q Consensus       106 ~~~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~~~~D  183 (237)
                      .-.+.++|..|++.| .+..++..+ ....+|+.++.+++.++.+.+.+.....   +.+...|..+ ..... .-+..|
T Consensus        20 ~l~gK~vlItGasgG-IG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~d~~~~~~~~~-~~~~iD   94 (191)
T d1luaa1          20 SVKGKKAVVLAGTGP-VGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFK---VNVTAAETADDASRAE-AVKGAH   94 (191)
T ss_dssp             CCTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHT---CCCEEEECCSHHHHHH-HTTTCS
T ss_pred             CCCCCEEEEECCCHH-HHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccc---hhhhhhhcccHHHHHH-HhcCcC
Confidence            346889999986554 222222221 1247899999999988888776654321   2233444432 11111 115689


Q ss_pred             EEEEeCC
Q 026506          184 SIFLDLP  190 (237)
Q Consensus       184 ~v~~~~~  190 (237)
                      ++|.+.+
T Consensus        95 ilin~Ag  101 (191)
T d1luaa1          95 FVFTAGA  101 (191)
T ss_dssp             EEEECCC
T ss_pred             eeeecCc
Confidence            9887643

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=90.93  E-value=0.057  Score=39.87  Aligned_cols=64  Identities=16%  Similarity=0.156  Sum_probs=43.7

Q ss_pred             EEEccccC--CCCCCCCCCCCCEEEEeCCCh-------------------hchHHHHHhcccCCCEEEEEeCCHHHHHHH
Q 026506          164 VGVRDIQG--QGFPDEFSGLADSIFLDLPQP-------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRS  222 (237)
Q Consensus       164 ~~~~d~~~--~~~~~~~~~~~D~v~~~~~~~-------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~  222 (237)
                      +..+|..+  ..+++   +++|+|+.|+|-.                   ...++++.+.|+|+|.+++... ......+
T Consensus         7 i~~gDcle~l~~lpd---~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~-~~~~~~~   82 (256)
T d1g60a_           7 IHQMNCFDFLDQVEN---KSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNT-PFNCAFI   82 (256)
T ss_dssp             EEECCHHHHHHHSCT---TCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC-HHHHHHH
T ss_pred             EEeccHHHHHhhCcC---CCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccC-chhhhhh
Confidence            56677654  23454   7899999998721                   1367889999999999886664 3445556


Q ss_pred             HHHHHh-cCc
Q 026506          223 CESLRL-NFT  231 (237)
Q Consensus       223 ~~~l~~-~f~  231 (237)
                      ...+.+ +|.
T Consensus        83 ~~~~~~~g~~   92 (256)
T d1g60a_          83 CQYLVSKGMI   92 (256)
T ss_dssp             HHHHHHTTCE
T ss_pred             hhhhhcccce
Confidence            666666 554

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=90.88  E-value=0.75  Score=33.89  Aligned_cols=81  Identities=22%  Similarity=0.254  Sum_probs=52.0

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC-CCCC------CCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GFPD------EFS  179 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~------~~~  179 (237)
                      .|.++|..|++.| ++..++..+ ....+|+.+|.+++.++.+.+.+...+....+.....|+.+. ....      ..-
T Consensus         3 ~gK~alITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   81 (258)
T d1iy8a_           3 TDRVVLITGGGSG-LGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   81 (258)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            4678888887664 333333322 234789999999999988877766555444588888898751 1110      011


Q ss_pred             CCCCEEEEeC
Q 026506          180 GLADSIFLDL  189 (237)
Q Consensus       180 ~~~D~v~~~~  189 (237)
                      ++.|+++.+.
T Consensus        82 G~iDiLVnnA   91 (258)
T d1iy8a_          82 GRIDGFFNNA   91 (258)
T ss_dssp             SCCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            5799988764

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=90.80  E-value=0.33  Score=38.02  Aligned_cols=52  Identities=13%  Similarity=0.146  Sum_probs=38.5

Q ss_pred             hcCCCCCCEEEEEccCccHHHHHHHHHhC------CCcEEEEEeCCHHHHHHHHHHHH
Q 026506          103 YLELVPGCLVLESGTGSGSLTTSLARAVA------PTGHVYTFDFHEQRAASAREDFE  154 (237)
Q Consensus       103 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~------~~~~v~~vD~~~~~~~~a~~~~~  154 (237)
                      .++..+...|+|+|+|.|.++..++..+.      ...+++.+|.++...+.-++++.
T Consensus        74 ~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~  131 (365)
T d1zkda1          74 AADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  131 (365)
T ss_dssp             HTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             HhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence            34444456899999999999988877653      23568999999987776666543

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=90.79  E-value=0.7  Score=33.65  Aligned_cols=101  Identities=18%  Similarity=0.149  Sum_probs=62.2

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC------CCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFS  179 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~------~~~  179 (237)
                      .|.++|..|++.| ++..+++.+ ....+|+..+.+.+.++...+   ..+  ..+.+...|+.+.. ...      ...
T Consensus         4 ~gK~alItGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~---~~~--~~~~~~~~Dls~~~~i~~~~~~i~~~~   77 (241)
T d2a4ka1           4 SGKTILVTGAASG-IGRAALDLFAREGASLVAVDREERLLAEAVA---ALE--AEAIAVVADVSDPKAVEAVFAEALEEF   77 (241)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---TCC--SSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---HcC--CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            5788898887754 444444433 235799999999987665444   233  44778888987511 100      011


Q ss_pred             CCCCEEEEeCCCh------------------------hchHHHHHhcccCCCEEEEEeC
Q 026506          180 GLADSIFLDLPQP------------------------WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       180 ~~~D~v~~~~~~~------------------------~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      ++.|+++.+....                        ..+.+.+.+.++.++.+++.+.
T Consensus        78 g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss  136 (241)
T d2a4ka1          78 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGS  136 (241)
T ss_dssp             SCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             CCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccc
Confidence            5789988754211                        1245666778888888776654

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=90.65  E-value=0.74  Score=35.54  Aligned_cols=103  Identities=13%  Similarity=0.040  Sum_probs=60.9

Q ss_pred             HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506          100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF  178 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  178 (237)
                      ..+++..+...++..+|||. +..-+.......+-.+|...+.+++..+...+++...  .. +.+...+-.+...    
T Consensus       119 aa~~LA~~da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~--~g-~~v~~~~s~~eav----  191 (340)
T d1x7da_         119 AAQALARPNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEY--SG-LTIRRASSVAEAV----  191 (340)
T ss_dssp             HHHHHSCTTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTC--TT-CEEEECSSHHHHH----
T ss_pred             HHHHhhccCCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhc--cC-CCceecCCHHHHH----
Confidence            45566666678999999999 5554444444445689999999998887777766432  12 4444433221222    


Q ss_pred             CCCCCEEEEeCCCh--hchHHHHHhcccCCCEEEEE
Q 026506          179 SGLADSIFLDLPQP--WLAIPSAKKMLKQDGILCSF  212 (237)
Q Consensus       179 ~~~~D~v~~~~~~~--~~~l~~~~~~L~~gG~l~~~  212 (237)
                       ...|+|+.....+  ..++.  ...++||-.+..+
T Consensus       192 -~~ADIi~t~Tas~s~~Pv~~--~~~l~pG~hI~ai  224 (340)
T d1x7da_         192 -KGVDIITTVTADKAYATIIT--PDMLEPGMHLNAV  224 (340)
T ss_dssp             -TTCSEEEECCCCSSEEEEEC--GGGCCTTCEEEEC
T ss_pred             -hcCCceeeccccCCCCcccc--hhhcCCCCEEeec
Confidence             3578887654322  11222  2456676665544

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.57  E-value=1.5  Score=28.94  Aligned_cols=105  Identities=14%  Similarity=0.105  Sum_probs=55.8

Q ss_pred             CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506          110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER-TGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL  187 (237)
Q Consensus       110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~  187 (237)
                      .+|..+|+|. |......+...+-..++..+|++++..+.-..-+.. ............|..+  +     ...|+|++
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~--~-----~~adivvi   73 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYAD--L-----KGSDVVIV   73 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGG--G-----TTCSEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHH--h-----cCCCEEEE
Confidence            3678899887 554444333334446899999998765532221111 1112224444444432  2     45899987


Q ss_pred             eCCChh--------------chHHHH---HhcccCCCEEEEEeCCHHHHHH
Q 026506          188 DLPQPW--------------LAIPSA---KKMLKQDGILCSFSPCIEQVQR  221 (237)
Q Consensus       188 ~~~~~~--------------~~l~~~---~~~L~~gG~l~~~~~~~~~~~~  221 (237)
                      ....+.              ..+..+   .....|++.+++++...+.+-.
T Consensus        74 tag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNPvd~~t~  124 (140)
T d1a5za1          74 AAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTY  124 (140)
T ss_dssp             CCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHH
T ss_pred             ecccccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCcHHHHHH
Confidence            543211              122222   3334589998877655554433

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.46  E-value=1.6  Score=29.09  Aligned_cols=109  Identities=15%  Similarity=0.083  Sum_probs=58.8

Q ss_pred             CCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-C-CCCcEEEEEccccCCCCCCCCCCCCC
Q 026506          107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-G-VSSFVTVGVRDIQGQGFPDEFSGLAD  183 (237)
Q Consensus       107 ~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~-~~~~i~~~~~d~~~~~~~~~~~~~~D  183 (237)
                      ..+.+|..+|+|. |....+.+...+-..++..+|+++++.+--..-+... . ....+.+...|..+  +     ...|
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~--l-----~daD   76 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDD--C-----RDAD   76 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGG--T-----TTCS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHH--h-----ccce
Confidence            3567899999987 5544444444344468999999988744322222211 1 12224455555432  2     3479


Q ss_pred             EEEEeCCChh--------------chHHHHHh---cccCCCEEEEEeCCHHHHHHH
Q 026506          184 SIFLDLPQPW--------------LAIPSAKK---MLKQDGILCSFSPCIEQVQRS  222 (237)
Q Consensus       184 ~v~~~~~~~~--------------~~l~~~~~---~L~~gG~l~~~~~~~~~~~~~  222 (237)
                      +|++....+.              ..++.+.+   ...|.+.+++++...+.+-..
T Consensus        77 vvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd~~t~~  132 (148)
T d1ldna1          77 LVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYA  132 (148)
T ss_dssp             EEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHH
T ss_pred             eEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccHHHHHH
Confidence            9987543221              12222222   225899888776555544443

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=90.23  E-value=0.81  Score=31.25  Aligned_cols=92  Identities=14%  Similarity=0.165  Sum_probs=60.6

Q ss_pred             CCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506          106 LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS  184 (237)
Q Consensus       106 ~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~  184 (237)
                      .-.|.+++.+|-|. |.-...-++.+  ..+|+++|++|-.  ..+...  .|    .++  .... ...     ...|+
T Consensus        20 ~laGk~vvV~GYG~vGrG~A~~~rg~--Ga~V~V~E~DPi~--alqA~m--dG----f~v--~~~~-~a~-----~~aDi   81 (163)
T d1v8ba1          20 LISGKIVVICGYGDVGKGCASSMKGL--GARVYITEIDPIC--AIQAVM--EG----FNV--VTLD-EIV-----DKGDF   81 (163)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHH--TCEEEEECSCHHH--HHHHHT--TT----CEE--CCHH-HHT-----TTCSE
T ss_pred             eecCCEEEEecccccchhHHHHHHhC--CCEEEEEecCchh--hHHHHh--cC----Ccc--Cchh-Hcc-----ccCcE
Confidence            46789999999998 65555555555  4799999999944  333322  23    222  2221 112     44799


Q ss_pred             EEEeCCChhchHHHHHhcccCCCEEEEEeCC
Q 026506          185 IFLDLPQPWLAIPSAKKMLKQDGILCSFSPC  215 (237)
Q Consensus       185 v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  215 (237)
                      ++...+...-.-.+-.+.||+|.+|.-.+.+
T Consensus        82 ~vTaTGn~~vI~~~h~~~MKdgaIl~N~GHf  112 (163)
T d1v8ba1          82 FITCTGNVDVIKLEHLLKMKNNAVVGNIGHF  112 (163)
T ss_dssp             EEECCSSSSSBCHHHHTTCCTTCEEEECSST
T ss_pred             EEEcCCCCccccHHHHHHhhCCeEEEecccc
Confidence            8887776655567778899999999866544

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.88  E-value=0.97  Score=33.19  Aligned_cols=79  Identities=15%  Similarity=0.215  Sum_probs=52.3

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC------CCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFS  179 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~------~~~  179 (237)
                      .|.++|..|++. +++..++..+ ....+|+.++.+++.++.+.+.+...+  ..+.+...|+.+.. ...      ..-
T Consensus        10 ~gK~alITGas~-GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~~   86 (255)
T d1fmca_          10 DGKCAIITGAGA-GIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISKL   86 (255)
T ss_dssp             TTCEEEETTTTS-HHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            477888877655 4444454443 345789999999999988888877665  33778888987511 100      011


Q ss_pred             CCCCEEEEeC
Q 026506          180 GLADSIFLDL  189 (237)
Q Consensus       180 ~~~D~v~~~~  189 (237)
                      ++.|+++.+.
T Consensus        87 g~iDilvnnA   96 (255)
T d1fmca_          87 GKVDILVNNA   96 (255)
T ss_dssp             SSCCEEEECC
T ss_pred             CCCCEeeeCC
Confidence            5799988764

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=89.72  E-value=0.51  Score=34.65  Aligned_cols=98  Identities=16%  Similarity=0.166  Sum_probs=57.5

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC------CC
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EF  178 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~------~~  178 (237)
                      -.|.++|..|++.| ++..++..+ ....+|+.+|.+++..+.+++    .+    ..+...|+.+.. ...      ..
T Consensus         3 l~GK~alITGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~----~~----~~~~~~Dv~~~~~v~~~~~~~~~~   73 (248)
T d2d1ya1           3 FAGKGVLVTGGARG-IGRAIAQAFAREGALVALCDLRPEGKEVAEA----IG----GAFFQVDLEDERERVRFVEEAAYA   73 (248)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSTTHHHHHHH----HT----CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cC----CeEEEEeCCCHHHHHHHHHHHHHh
Confidence            36889999986654 444444333 234789999999887665544    23    345667876510 000      01


Q ss_pred             CCCCCEEEEeCCCh------------------------hchHHHHHhcccC--CCEEEEEe
Q 026506          179 SGLADSIFLDLPQP------------------------WLAIPSAKKMLKQ--DGILCSFS  213 (237)
Q Consensus       179 ~~~~D~v~~~~~~~------------------------~~~l~~~~~~L~~--gG~l~~~~  213 (237)
                      -++.|+++.+....                        ..+.+.+.+.|++  +|.++.++
T Consensus        74 ~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~is  134 (248)
T d2d1ya1          74 LGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVA  134 (248)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             cCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccc
Confidence            15799988764310                        1245666677744  67887664

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=89.71  E-value=0.05  Score=39.05  Aligned_cols=34  Identities=15%  Similarity=-0.068  Sum_probs=28.2

Q ss_pred             cCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccc
Q 026506           12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSD   53 (237)
Q Consensus        12 ~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   53 (237)
                      -...+++||||++....+        |+.|..|..|..+.|.
T Consensus        79 ~V~~~~~GdrV~~~~~~~--------c~~c~~c~~g~~~~C~  112 (202)
T d1e3ia1          79 GVTNFKPGDKVIPFFAPQ--------CKRCKLCLSPLTNLCG  112 (202)
T ss_dssp             TCCSCCTTCEEEECSSCC--------CSSSHHHHCTTCCCCT
T ss_pred             CceeccCCCEEEEEeecc--------ccccccccCCcccccc
Confidence            346799999999988777        8999999988877765

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=89.68  E-value=1.4  Score=30.06  Aligned_cols=52  Identities=10%  Similarity=0.043  Sum_probs=35.7

Q ss_pred             HHHhcCCCCCCEEEEEccCccHHH-HHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026506          100 VIMYLELVPGCLVLESGTGSGSLT-TSLARAVAPTGHVYTFDFHEQRAASARED  152 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~G~~~-~~~~~~~~~~~~v~~vD~~~~~~~~a~~~  152 (237)
                      +++..+..++.+||.+|+|.-.-+ ...+... +..+++.+..+++..+...+.
T Consensus         8 ~l~~~~~~~~~~vlIlGaGGaarai~~aL~~~-g~~~I~I~nR~~~ka~~L~~~   60 (167)
T d1npya1           8 LIEKYHLNKNAKVIVHGSGGMAKAVVAAFKNS-GFEKLKIYARNVKTGQYLAAL   60 (167)
T ss_dssp             HHHHTTCCTTSCEEEECSSTTHHHHHHHHHHT-TCCCEEEECSCHHHHHHHHHH
T ss_pred             HHHHcCCCCCCeEEEECCCHHHHHHHHHHHHC-CCCEEEEecccHHHHHHHHHh
Confidence            556666667889999999884444 3334443 346789999998876665554

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.57  E-value=0.82  Score=33.97  Aligned_cols=81  Identities=20%  Similarity=0.240  Sum_probs=53.8

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccCCC-CCC------CC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVS-SFVTVGVRDIQGQG-FPD------EF  178 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~-~~~------~~  178 (237)
                      .|.++|..|++.| ++..++..+ ....+|+.+|.+++.++.+.+.+...+.. .++.....|+.+.. ...      ..
T Consensus         3 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           3 SGKSVIITGSSNG-IGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            4778888887664 444444333 23478999999999999988888776643 35888999987511 100      01


Q ss_pred             CCCCCEEEEeC
Q 026506          179 SGLADSIFLDL  189 (237)
Q Consensus       179 ~~~~D~v~~~~  189 (237)
                      -++.|+++.+.
T Consensus        82 ~G~iDilVnnA   92 (274)
T d1xhla_          82 FGKIDILVNNA   92 (274)
T ss_dssp             HSCCCEEEECC
T ss_pred             cCCceEEEeec
Confidence            15789988764

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.29  E-value=0.84  Score=33.47  Aligned_cols=82  Identities=16%  Similarity=0.198  Sum_probs=52.3

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC------CCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFS  179 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~------~~~  179 (237)
                      .|.++|..|++.| ++..++..+ ....+|+.+|.+++.++.+.+.+.......++.+...|+.+.. ...      ..-
T Consensus         2 ~GKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           2 NGKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            4778888887654 444444332 2347899999999988888776654332345888889987611 110      011


Q ss_pred             CCCCEEEEeCC
Q 026506          180 GLADSIFLDLP  190 (237)
Q Consensus       180 ~~~D~v~~~~~  190 (237)
                      ++.|+++.+..
T Consensus        81 G~iDilVnnAg   91 (254)
T d2gdza1          81 GRLDILVNNAG   91 (254)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCcCeeccccc
Confidence            57999887654

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=88.96  E-value=0.78  Score=31.69  Aligned_cols=107  Identities=15%  Similarity=0.120  Sum_probs=54.8

Q ss_pred             CEEEEEccCc-cHH-HHHHHHHhCCCcEEE-EEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          110 CLVLESGTGS-GSL-TTSLARAVAPTGHVY-TFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       110 ~~vldiG~G~-G~~-~~~~~~~~~~~~~v~-~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      -+|..+|||. |.. ............+++ .+|.+++..+...+.   .+...    ...|+.+ -+..   ..+|+|+
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~---~~~~~----~~~~~~e-ll~~---~~id~v~   72 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKM---VGNPA----VFDSYEE-LLES---GLVDAVD   72 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHH---HSSCE----EESCHHH-HHHS---SCCSEEE
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcc---ccccc----eeeeeec-cccc---cccceee
Confidence            4788999987 432 233333333334566 458888776655443   34321    2234332 1222   4589998


Q ss_pred             EeCCChhchHHHHHhcccCCCEEEEEeCC---HHHHHHHHHHHHh
Q 026506          187 LDLPQPWLAIPSAKKMLKQDGILCSFSPC---IEQVQRSCESLRL  228 (237)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~---~~~~~~~~~~l~~  228 (237)
                      +..|... -.+.+..+|+.|=-+++--|.   ..+..++.+..++
T Consensus        73 I~tp~~~-h~~~~~~al~~gk~V~~EKPl~~~~~e~~~l~~~~~~  116 (181)
T d1zh8a1          73 LTLPVEL-NLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEK  116 (181)
T ss_dssp             ECCCGGG-HHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred             ccccccc-cccccccccccchhhhcCCCCcCCHHHHHHHHHHHHH
Confidence            8776443 344555555554444433332   3444445444444

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=88.85  E-value=0.068  Score=39.95  Aligned_cols=47  Identities=23%  Similarity=0.304  Sum_probs=34.8

Q ss_pred             EEEccccC--CCCCCCCCCCCCEEEEeCCCh----------------hchHHHHHhcccCCCEEEEEe
Q 026506          164 VGVRDIQG--QGFPDEFSGLADSIFLDLPQP----------------WLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       164 ~~~~d~~~--~~~~~~~~~~~D~v~~~~~~~----------------~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +..+|..+  ..+++   +++|+|+.|+|-.                ...+.++.+.|||+|.+++..
T Consensus         7 ~~~~D~le~l~~l~d---~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~   71 (279)
T d1eg2a_           7 YDVCDCLDTLAKLPD---DSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG   71 (279)
T ss_dssp             EEECCHHHHHHTSCT---TCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEechHHHHHhhCcC---CCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEec
Confidence            45567665  34555   7899999999821                235778999999999998765

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=88.79  E-value=0.085  Score=37.65  Aligned_cols=35  Identities=11%  Similarity=-0.047  Sum_probs=27.5

Q ss_pred             ccCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccc
Q 026506           11 SFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSD   53 (237)
Q Consensus        11 ~~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   53 (237)
                      +....+++||||++....+        |+.|..|+.|....|.
T Consensus        78 ~~v~~~~vGdrV~v~~~~~--------c~~c~~c~~g~~~~C~  112 (198)
T d2jhfa1          78 EGVTTVRPGDKVIPLFTPQ--------CGKCRVCKHPEGNFCL  112 (198)
T ss_dssp             TTCCSCCTTCEEEECSSCC--------CSCSHHHHSTTCCCCT
T ss_pred             ccccCcCCCCEEEEeeeec--------ccccccccCCccceec
Confidence            3467899999999988777        7888888877766665

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=88.64  E-value=0.075  Score=36.40  Aligned_cols=92  Identities=13%  Similarity=-0.036  Sum_probs=50.5

Q ss_pred             CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE--EEEccccCCCCCCCCCCCCCEEE
Q 026506          110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT--VGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~--~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      ++|+.+|+|. |......+...  ...|+.++.+++..+...    ..+......  ....+..    ..  ...+|+|+
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~--G~~V~~~~r~~~~~~~~~----~~~~~~~~~~~~~~~~~~----~~--~~~~D~ii   68 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQ--GHEVQGWLRVPQPYCSVN----LVETDGSIFNESLTANDP----DF--LATSDLLL   68 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCSEEEEE----EECTTSCEEEEEEEESCH----HH--HHTCSEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHC--CCceEEEEcCHHHhhhhc----cccCCccccccccccchh----hh--hcccceEE
Confidence            5799999988 65544444443  357888887653211100    011111011  1111110    10  14699999


Q ss_pred             EeCCCh--hchHHHHHhcccCCCEEEEEe
Q 026506          187 LDLPQP--WLAIPSAKKMLKQDGILCSFS  213 (237)
Q Consensus       187 ~~~~~~--~~~l~~~~~~L~~gG~l~~~~  213 (237)
                      +..+.+  .+.++.+...++++..++...
T Consensus        69 i~vka~~~~~~~~~l~~~~~~~~~Iv~~q   97 (167)
T d1ks9a2          69 VTLKAWQVSDAVKSLASTLPVTTPILLIH   97 (167)
T ss_dssp             ECSCGGGHHHHHHHHHTTSCTTSCEEEEC
T ss_pred             EeecccchHHHHHhhccccCcccEEeecc
Confidence            877644  356777888888888777554

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=88.53  E-value=0.66  Score=31.51  Aligned_cols=41  Identities=17%  Similarity=-0.040  Sum_probs=28.7

Q ss_pred             CCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026506          109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASARE  151 (237)
Q Consensus       109 ~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~  151 (237)
                      +.+||.+|+|- |..+...+..  ...+|+.+|.+.+..+...+
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~--~g~~V~v~dr~~~~a~~l~~   43 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTD--SGIKVTVACRTLESAKKLSA   43 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHT--TTCEEEEEESCHHHHHHHHT
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCEEEEEECChHHHHHHHh
Confidence            46899999976 5554433332  23689999999987776654

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=88.34  E-value=0.77  Score=33.56  Aligned_cols=78  Identities=14%  Similarity=0.144  Sum_probs=44.8

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC------CCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFS  179 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~------~~~  179 (237)
                      .|.++|..|++. +++..++..+ ....+|+.+|.++..  .+.+.++..+  .++.+...|+.+.. ...      ..-
T Consensus         4 ~gKvalVTGas~-GIG~aia~~la~~Ga~V~~~~~~~~~--~~~~~~~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~   78 (247)
T d2ew8a1           4 KDKLAVITGGAN-GIGRAIAERFAVEGADIAIADLVPAP--EAEAAIRNLG--RRVLTVKCDVSQPGDVEAFGKQVISTF   78 (247)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESSCCH--HHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCchH--HHHHHHHHcC--CcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            467888888655 4444444433 234789999987642  2333334444  34788888987511 110      011


Q ss_pred             CCCCEEEEeCC
Q 026506          180 GLADSIFLDLP  190 (237)
Q Consensus       180 ~~~D~v~~~~~  190 (237)
                      ++.|+++.+..
T Consensus        79 G~iDilVnnAG   89 (247)
T d2ew8a1          79 GRCDILVNNAG   89 (247)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            57999887653

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=88.22  E-value=2.4  Score=28.11  Aligned_cols=104  Identities=15%  Similarity=0.096  Sum_probs=55.2

Q ss_pred             CCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER-TGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       109 ~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      ..+|..+|+|. |......+...+-..++..+|++++..+--..-+.. ........+..+|..+  .     ...|+|+
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~~--~-----~~adivv   77 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSD--C-----KDADLVV   77 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGG--G-----TTCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHHH--h-----ccccEEE
Confidence            46899999987 555444444434446899999998765421111111 1111113444555432  2     4589998


Q ss_pred             EeCCChh--------------chHHHHH---hcccCCCEEEEEeCCHHHH
Q 026506          187 LDLPQPW--------------LAIPSAK---KMLKQDGILCSFSPCIEQV  219 (237)
Q Consensus       187 ~~~~~~~--------------~~l~~~~---~~L~~gG~l~~~~~~~~~~  219 (237)
                      +....+.              ..++...   ..-.|.+.+++.+...+-+
T Consensus        78 itag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvdv~  127 (146)
T d1ez4a1          78 ITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDIL  127 (146)
T ss_dssp             ECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHH
T ss_pred             EecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccHHH
Confidence            7543221              1222222   2336889888776544433

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.17  E-value=2.6  Score=28.43  Aligned_cols=42  Identities=17%  Similarity=0.161  Sum_probs=26.4

Q ss_pred             CEEEEEccCc-cHHHHH--HHHHhC--CCcEEEEEeCCHHHHHHHHH
Q 026506          110 CLVLESGTGS-GSLTTS--LARAVA--PTGHVYTFDFHEQRAASARE  151 (237)
Q Consensus       110 ~~vldiG~G~-G~~~~~--~~~~~~--~~~~v~~vD~~~~~~~~a~~  151 (237)
                      .+|..+|+|+ |.....  ++....  ...++..+|++++..+.+..
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d   47 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVD   47 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHH
Confidence            3688999997 432221  222221  12589999999998776544

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=88.17  E-value=1.9  Score=31.31  Aligned_cols=103  Identities=15%  Similarity=0.212  Sum_probs=60.7

Q ss_pred             EEEEEccCccHHHHHHHHHh-CCCcEEEEEeC-CHHHHHHHHHHHHHcCCCCcEEEEEccccCC-CCCC------CCCCC
Q 026506          111 LVLESGTGSGSLTTSLARAV-APTGHVYTFDF-HEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GFPD------EFSGL  181 (237)
Q Consensus       111 ~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~-~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~------~~~~~  181 (237)
                      .+|.-|++ ++++..++..+ ....+|+..+. +++.++...+.++..+  .++.+...|+.+. ....      ...++
T Consensus         3 V~lITGas-~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   79 (244)
T d1edoa_           3 VVVVTGAS-RGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYG--GQAITFGGDVSKEADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             EEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHT--CEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred             EEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcC--CcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            45555544 45555555544 22367877664 6777888777777666  3477888898751 1100      01267


Q ss_pred             CCEEEEeCCCh------------------------hchHHHHHhcc--cCCCEEEEEeCCH
Q 026506          182 ADSIFLDLPQP------------------------WLAIPSAKKML--KQDGILCSFSPCI  216 (237)
Q Consensus       182 ~D~v~~~~~~~------------------------~~~l~~~~~~L--~~gG~l~~~~~~~  216 (237)
                      .|+++.+....                        ....+.+.+.|  +.+|.++.++...
T Consensus        80 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~  140 (244)
T d1edoa_          80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVV  140 (244)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTH
T ss_pred             CCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChh
Confidence            99988764311                        12455566666  4678888776543

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.14  E-value=0.1  Score=36.20  Aligned_cols=36  Identities=14%  Similarity=-0.131  Sum_probs=24.4

Q ss_pred             ccCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccc
Q 026506           11 SFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSD   53 (237)
Q Consensus        11 ~~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   53 (237)
                      +....+++||||.+...       ...|+.|..|..+..+.+.
T Consensus        72 ~~v~~~~vGdrV~~~~~-------~~~~~~~~~~~~~~~~~~~  107 (171)
T d1rjwa1          72 PGVTHLKVGDRVGIPWL-------YSACGHCDYCLSGQETLCE  107 (171)
T ss_dssp             TTCCSCCTTCEEEECSE-------EECCSCSHHHHTTCGGGCT
T ss_pred             ccccCceeeeEEeeccc-------cccccccccccCCCccccc
Confidence            35678999999987542       2237777777777655554

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.11  E-value=1.1  Score=30.28  Aligned_cols=100  Identities=17%  Similarity=0.140  Sum_probs=60.4

Q ss_pred             EEEEEccCc-cH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506          111 LVLESGTGS-GS-LTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD  188 (237)
Q Consensus       111 ~vldiG~G~-G~-~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~  188 (237)
                      +|-.||.|. |. ++..+++.   ..+|++.|.+++..+.+++.    +.    . ...+..+  ..    ...|+|++.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~---G~~V~~~d~~~~~~~~~~~~----~~----~-~~~~~~e--~~----~~~d~ii~~   63 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKA---GYSLVVSDRNPEAIADVIAA----GA----E-TASTAKA--IA----EQCDVIITM   63 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT---TCEEEEECSCHHHHHHHHHT----TC----E-ECSSHHH--HH----HHCSEEEEC
T ss_pred             EEEEEehhHHHHHHHHHHHHC---CCeEEEEeCCcchhHHHHHh----hh----h-hcccHHH--HH----hCCCeEEEE
Confidence            567788887 44 33334432   36899999999988877652    31    1 1112111  11    358999999


Q ss_pred             CCChhch---H---HHHHhcccCCCEEEEEeCCH-HHHHHHHHHHHh
Q 026506          189 LPQPWLA---I---PSAKKMLKQDGILCSFSPCI-EQVQRSCESLRL  228 (237)
Q Consensus       189 ~~~~~~~---l---~~~~~~L~~gG~l~~~~~~~-~~~~~~~~~l~~  228 (237)
                      .+++.+.   +   ..+...+++|..++-.++.. +...+..+.+++
T Consensus        64 v~~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~  110 (161)
T d1vpda2          64 LPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKA  110 (161)
T ss_dssp             CSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHH
Confidence            8876532   2   23566777877776555433 555666667666

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=87.53  E-value=0.36  Score=33.87  Aligned_cols=95  Identities=14%  Similarity=0.160  Sum_probs=58.5

Q ss_pred             CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-------C-CC--------CcEEEEEccccCC
Q 026506          110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-------G-VS--------SFVTVGVRDIQGQ  172 (237)
Q Consensus       110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-------~-~~--------~~i~~~~~d~~~~  172 (237)
                      .+|..+|+|. |.-.......  .+.+|+.+|.+++.++.+.+++...       + ..        +++.. ..+.  .
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~--~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~--~   79 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSAS--KGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP-TLSY--G   79 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE-ESSS--T
T ss_pred             CEEEEECcCHHHHHHHHHHHh--CCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec-cccc--c
Confidence            4688999988 4433223333  2468999999999988877764321       1 10        11221 1111  1


Q ss_pred             CCCCCCCCCCCEEEEeCCChh----chHHHHHhcccCCCEEEEEeC
Q 026506          173 GFPDEFSGLADSIFLDLPQPW----LAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       173 ~~~~~~~~~~D~v~~~~~~~~----~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      .+     ...|+|+...+...    ++++++-+.++++-+|...++
T Consensus        80 ~~-----~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS  120 (186)
T d1wdka3          80 DF-----GNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTS  120 (186)
T ss_dssp             TG-----GGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCS
T ss_pred             cc-----cccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccc
Confidence            12     45899998887653    567888888888888774443

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=87.40  E-value=2.3  Score=26.86  Aligned_cols=57  Identities=14%  Similarity=0.171  Sum_probs=39.4

Q ss_pred             HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCC--------HHHHHHHHHHHHHcCC
Q 026506          100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFH--------EQRAASAREDFERTGV  158 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~--------~~~~~~a~~~~~~~~~  158 (237)
                      +.+.++..++.+|+.+|+|. |.-....++..  ..+++.++.+        +...+..++.++..++
T Consensus        13 ~~~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~--g~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~gI   78 (121)
T d1mo9a2          13 LVEELDYEPGSTVVVVGGSKTAVEYGCFFNAT--GRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGM   78 (121)
T ss_dssp             HHHHCCSCCCSEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhhCCCCEEEEECCCHHHHHHHHHHHhc--chhheEeeccchhhcccccchhhhhhhhhhcccc
Confidence            55667777889999999998 55444445543  4688888754        4456667777776664

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=87.36  E-value=1.3  Score=32.77  Aligned_cols=81  Identities=17%  Similarity=0.170  Sum_probs=53.0

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccCCC-CCC------CC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVS-SFVTVGVRDIQGQG-FPD------EF  178 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~-~~~------~~  178 (237)
                      .|.++|..|++. +++..++..+ ....+|+.+|.+++.++.+.+.+...+.. ..+.....|+.+.. ...      ..
T Consensus         4 ~gK~alVTGas~-GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~   82 (272)
T d1xkqa_           4 SNKTVIITGSSN-GIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   82 (272)
T ss_dssp             TTCEEEETTCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            467888888665 4444444332 23478999999999999988888766543 34888889987511 100      01


Q ss_pred             CCCCCEEEEeC
Q 026506          179 SGLADSIFLDL  189 (237)
Q Consensus       179 ~~~~D~v~~~~  189 (237)
                      .++.|+++.+.
T Consensus        83 ~g~iDilvnnA   93 (272)
T d1xkqa_          83 FGKIDVLVNNA   93 (272)
T ss_dssp             HSCCCEEEECC
T ss_pred             hCCceEEEeCC
Confidence            15789988764

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=87.29  E-value=0.063  Score=37.82  Aligned_cols=35  Identities=20%  Similarity=-0.071  Sum_probs=27.2

Q ss_pred             cCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccc
Q 026506           12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSD   53 (237)
Q Consensus        12 ~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   53 (237)
                      -...+++||||.+....       ..||.|..|+.|..+.|+
T Consensus        72 ~V~~~~vGdrV~v~~~~-------~~cg~C~~C~~g~~~~C~  106 (179)
T d1uufa1          72 QVEKYAPGDLVGVGCIV-------DSCKHCEECEDGLENYCD  106 (179)
T ss_dssp             TCCSCCTTCEEEECSEE-------ECCSSSHHHHTTCGGGCT
T ss_pred             ccccCCCCCEEEEcccc-------cccCccccccCcccccCC
Confidence            45689999999885521       138999999999988886

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=87.23  E-value=1.2  Score=32.83  Aligned_cols=78  Identities=12%  Similarity=0.193  Sum_probs=49.9

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC-CCCC------CCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GFPD------EFS  179 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~------~~~  179 (237)
                      .|.++|..|++.| ++..++..+ ....+|+.+|.+++.++.+.+.+..   ...+.+...|+.+. ....      ...
T Consensus         5 ~gKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (268)
T d2bgka1           5 QDKVAIITGGAGG-IGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTIAKH   80 (268)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC---CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            5788999987664 444444333 2347899999999988877766533   33477788888651 0100      011


Q ss_pred             CCCCEEEEeC
Q 026506          180 GLADSIFLDL  189 (237)
Q Consensus       180 ~~~D~v~~~~  189 (237)
                      +..|+++.+.
T Consensus        81 g~iD~lVnnA   90 (268)
T d2bgka1          81 GKLDIMFGNV   90 (268)
T ss_dssp             SCCCEEEECC
T ss_pred             CCcceecccc
Confidence            5789988654

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.05  E-value=1.5  Score=32.22  Aligned_cols=81  Identities=19%  Similarity=0.200  Sum_probs=52.3

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccCCC-CCC------CC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVS-SFVTVGVRDIQGQG-FPD------EF  178 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~-~~~------~~  178 (237)
                      .|..+|..|++.| ++..++..+ ....+|+.++.+++.++.+.+.+...+.. .++.+...|+.+.. ...      ..
T Consensus         4 ~gKvalVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (264)
T d1spxa_           4 AEKVAIITGSSNG-IGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   82 (264)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            4677787776654 444444332 23478999999999999888887766543 34888899986511 110      01


Q ss_pred             CCCCCEEEEeC
Q 026506          179 SGLADSIFLDL  189 (237)
Q Consensus       179 ~~~~D~v~~~~  189 (237)
                      -++.|+++.+.
T Consensus        83 ~g~iDilvnnA   93 (264)
T d1spxa_          83 FGKLDILVNNA   93 (264)
T ss_dssp             HSCCCEEEECC
T ss_pred             hCCCCEeeccc
Confidence            15789988654

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=86.87  E-value=1.2  Score=32.29  Aligned_cols=101  Identities=13%  Similarity=0.172  Sum_probs=60.2

Q ss_pred             EEEEEccCccHHHHHHHHHh---CC-----CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC-----
Q 026506          111 LVLESGTGSGSLTTSLARAV---AP-----TGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD-----  176 (237)
Q Consensus       111 ~vldiG~G~G~~~~~~~~~~---~~-----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~-----  176 (237)
                      .||.-|++.| ++..++..+   +.     ...++.++.+++.++...+.+...+  ....+...|+.+.. ...     
T Consensus         3 VvlITGas~G-IG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~   79 (240)
T d2bd0a1           3 ILLITGAGKG-IGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG--ALTDTITADISDMADVRRLTTHI   79 (240)
T ss_dssp             EEEEETTTSH-HHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT--CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             EEEEccCCCH-HHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHH
Confidence            3566676654 444444332   11     1248899999999988887776655  34777888887611 100     


Q ss_pred             -CCCCCCCEEEEeCCCh------------------------hchHHHHHhccc--CCCEEEEEeC
Q 026506          177 -EFSGLADSIFLDLPQP------------------------WLAIPSAKKMLK--QDGILCSFSP  214 (237)
Q Consensus       177 -~~~~~~D~v~~~~~~~------------------------~~~l~~~~~~L~--~gG~l~~~~~  214 (237)
                       ..-+..|+++.+....                        ....+.+.+.|+  .+|.++.++.
T Consensus        80 ~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS  144 (240)
T d2bd0a1          80 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITS  144 (240)
T ss_dssp             HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             HHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEec
Confidence             1126799988764311                        124556666664  5788886653

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=86.81  E-value=1.6  Score=27.79  Aligned_cols=52  Identities=12%  Similarity=0.158  Sum_probs=36.6

Q ss_pred             CCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeC--------CHHHHHHHHHHHHHcCC
Q 026506          105 ELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDF--------HEQRAASAREDFERTGV  158 (237)
Q Consensus       105 ~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~--------~~~~~~~a~~~~~~~~~  158 (237)
                      ..+...+|+.+|+|. |.-....+..+  ..+|+.++.        ++++.+.+++.++..|+
T Consensus        18 ~l~~p~~v~IiGgG~iG~E~A~~l~~~--g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV   78 (117)
T d1onfa2          18 NIKESKKIGIVGSGYIAVELINVIKRL--GIDSYIFARGNRILRKFDESVINVLENDMKKNNI   78 (117)
T ss_dssp             TCCCCSEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTC
T ss_pred             ccCCCCEEEEECCchHHHHHHHHHHhc--cccceeeehhccccccccHHHHHHHHHHHHhCCC
Confidence            344568999999988 54444444443  478999985        56677888888887764

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=86.73  E-value=2.1  Score=31.19  Aligned_cols=79  Identities=16%  Similarity=0.181  Sum_probs=51.0

Q ss_pred             CCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC------CCCC
Q 026506          109 GCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFSG  180 (237)
Q Consensus       109 ~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~------~~~~  180 (237)
                      |..+|.-|++. +++..++..+ ....+|+.++.+++.++.+.+.+...+.  .+.+...|+.+.. ...      ..-+
T Consensus         2 gKValITGas~-GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           2 SEVALVTGATS-GIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVERYG   78 (257)
T ss_dssp             CCEEEEESCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            45667777654 4444444433 2347899999999999988888776653  3788888987511 100      0126


Q ss_pred             CCCEEEEeCC
Q 026506          181 LADSIFLDLP  190 (237)
Q Consensus       181 ~~D~v~~~~~  190 (237)
                      +.|+++.+..
T Consensus        79 ~iDilVnnAG   88 (257)
T d2rhca1          79 PVDVLVNNAG   88 (257)
T ss_dssp             SCSEEEECCC
T ss_pred             CCCEEEeccc
Confidence            7999887653

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=86.53  E-value=3.3  Score=27.92  Aligned_cols=109  Identities=11%  Similarity=0.027  Sum_probs=58.4

Q ss_pred             CCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHH-HHHHHHHc-CCCCcEEEEEccccCCCCCCCCCCCCC
Q 026506          107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAAS-AREDFERT-GVSSFVTVGVRDIQGQGFPDEFSGLAD  183 (237)
Q Consensus       107 ~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~-a~~~~~~~-~~~~~i~~~~~d~~~~~~~~~~~~~~D  183 (237)
                      .+..+|-.+|+|. |......+...+-..++..+|.+++..+- +.+..... -..........|..+  .     ...|
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~--~-----~~ad   90 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSV--T-----ANSK   90 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGG--G-----TTCS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhh--c-----cccc
Confidence            3456999999988 66555555544445789999999876532 22211100 111223333344321  2     4589


Q ss_pred             EEEEeCCChh--------------chHHHHHhcc---cCCCEEEEEeCCHHHHHHH
Q 026506          184 SIFLDLPQPW--------------LAIPSAKKML---KQDGILCSFSPCIEQVQRS  222 (237)
Q Consensus       184 ~v~~~~~~~~--------------~~l~~~~~~L---~~gG~l~~~~~~~~~~~~~  222 (237)
                      +|++....+.              ..++.+.+.+   .|+|.+++++...+-+-..
T Consensus        91 iVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNPvDv~t~~  146 (160)
T d1i0za1          91 IVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYV  146 (160)
T ss_dssp             EEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHH
T ss_pred             EEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchHHHHHH
Confidence            9887543221              1233332222   5889988777655554433

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.51  E-value=3.3  Score=27.88  Aligned_cols=117  Identities=9%  Similarity=0.053  Sum_probs=61.4

Q ss_pred             CCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--CCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506          109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG--VSSFVTVGVRDIQGQGFPDEFSGLADSI  185 (237)
Q Consensus       109 ~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~~~~D~v  185 (237)
                      ..+|..+|+|. |....+.+...+-..++..+|++++..+--..-+....  ..........|..+  .     ...|+|
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~--~-----~~adiv   91 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNV--S-----ANSKLV   91 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGG--G-----TTEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhh--h-----ccccEE
Confidence            35899999987 55444444433334689999999876532211122111  11223334444432  2     457888


Q ss_pred             EEeCCChh--------------chHHHHHhc---ccCCCEEEEEeCCHHHHHHHHHHHHh-cCcccc
Q 026506          186 FLDLPQPW--------------LAIPSAKKM---LKQDGILCSFSPCIEQVQRSCESLRL-NFTGKE  234 (237)
Q Consensus       186 ~~~~~~~~--------------~~l~~~~~~---L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~  234 (237)
                      ++....+.              ..++.+.+.   ..|+|++++++...+.+...  ..+. +|+--+
T Consensus        92 vitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNPvDv~t~~--~~k~sg~p~~r  156 (159)
T d2ldxa1          92 IITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVDILTYV--VWKISGFPVGR  156 (159)
T ss_dssp             EECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSSHHHHHHH--HHHHHCSCTTT
T ss_pred             EEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCcHHHHHHH--HHHHHCcCccc
Confidence            87543221              233333333   36999988777655554433  2233 565433

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=86.42  E-value=0.65  Score=31.99  Aligned_cols=108  Identities=13%  Similarity=0.096  Sum_probs=59.6

Q ss_pred             EEEEEccCc-cH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506          111 LVLESGTGS-GS-LTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD  188 (237)
Q Consensus       111 ~vldiG~G~-G~-~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~  188 (237)
                      .|--||.|. |. ++..+++.   ..+|++.|.+++..+...+.    +.............+ ....  -...|.++..
T Consensus         4 nIg~IGlG~MG~~mA~~L~~~---G~~V~v~dr~~~~~~~l~~~----~~~~~~~~~a~~~~~-~~~~--~~~~~~ii~~   73 (176)
T d2pgda2           4 DIALIGLAVMGQNLILNMNDH---GFVVCAFNRTVSKVDDFLAN----EAKGTKVLGAHSLEE-MVSK--LKKPRRIILL   73 (176)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT---TCCEEEECSSTHHHHHHHHT----TTTTSSCEECSSHHH-HHHH--BCSSCEEEEC
T ss_pred             cEEEEeEhHHHHHHHHHHHHC---CCeEEEEcCCHHHHHHHHHh----ccccccccchhhhhh-hhhh--hcccceEEEe
Confidence            456677776 43 23333332   36899999999988877653    221100011111110 0000  0346888887


Q ss_pred             CCChh---chHHHHHhcccCCCEEEEEeCCH-HHHHHHHHHHHh
Q 026506          189 LPQPW---LAIPSAKKMLKQDGILCSFSPCI-EQVQRSCESLRL  228 (237)
Q Consensus       189 ~~~~~---~~l~~~~~~L~~gG~l~~~~~~~-~~~~~~~~~l~~  228 (237)
                      .+...   +.++.+...+++|-+++-.++.. ....+..+.+.+
T Consensus        74 ~~~~~~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~  117 (176)
T d2pgda2          74 VKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKD  117 (176)
T ss_dssp             SCTTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHh
Confidence            76654   35667788888888777555433 445566666665

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=86.18  E-value=0.47  Score=32.17  Aligned_cols=35  Identities=20%  Similarity=0.305  Sum_probs=26.0

Q ss_pred             CCEEEEEccCccH-HHHHHHHHhCCCcEEEEEeCCH
Q 026506          109 GCLVLESGTGSGS-LTTSLARAVAPTGHVYTFDFHE  143 (237)
Q Consensus       109 ~~~vldiG~G~G~-~~~~~~~~~~~~~~v~~vD~~~  143 (237)
                      |.+|+.+|+|..+ .+...++..++..+|+.+|.++
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            7899999999944 4444455556667899998765

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.12  E-value=1.5  Score=31.88  Aligned_cols=73  Identities=16%  Similarity=0.223  Sum_probs=46.1

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC-----CCCCCCCCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-----GFPDEFSGL  181 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~~~  181 (237)
                      .|.++|..|++.| ++..+++.+ ....+|+.++.+++.++.+.+..     .+ +.....|+.+.     .+..  -++
T Consensus         4 ~GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~-----~~-~~~~~~Dv~~~~~v~~~~~~--~g~   74 (242)
T d1cyda_           4 SGLRALVTGAGKG-IGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC-----PG-IEPVCVDLGDWDATEKALGG--IGP   74 (242)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS-----TT-CEEEECCTTCHHHHHHHHTT--CCC
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc-----CC-CeEEEEeCCCHHHHHHHHHH--cCC
Confidence            5789999887654 444444432 23478999999988776655432     13 56677787651     1111  167


Q ss_pred             CCEEEEeC
Q 026506          182 ADSIFLDL  189 (237)
Q Consensus       182 ~D~v~~~~  189 (237)
                      .|+++.+.
T Consensus        75 iDilVnnA   82 (242)
T d1cyda_          75 VDLLVNNA   82 (242)
T ss_dssp             CSEEEECC
T ss_pred             CeEEEECC
Confidence            99988764

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=85.93  E-value=1.1  Score=33.33  Aligned_cols=112  Identities=15%  Similarity=0.133  Sum_probs=73.9

Q ss_pred             EEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC---CCCCCCCCCCCCEEEEeCC
Q 026506          114 ESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG---QGFPDEFSGLADSIFLDLP  190 (237)
Q Consensus       114 diG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~~~~~~D~v~~~~~  190 (237)
                      .+-+||-.++..+++   +.-+.+.+|+.|+-.+..++++.   -+.++.+...|..+   ..+|..  .+--+|++|+|
T Consensus        88 ~~YPGSP~ia~~llR---~~Drl~l~ELHp~e~~~L~~~~~---~~~~~~v~~~DG~~~l~allPP~--~rRgLVLIDPp  159 (271)
T d2oo3a1          88 SYYPGSPYFAINQLR---SQDRLYLCELHPTEYNFLLKLPH---FNKKVYVNHTDGVSKLNALLPPP--EKRGLIFIDPS  159 (271)
T ss_dssp             CEEECHHHHHHHHSC---TTSEEEEECCSHHHHHHHTTSCC---TTSCEEEECSCHHHHHHHHCSCT--TSCEEEEECCC
T ss_pred             CcCCCCHHHHHHhCC---CCCceEEeecCHHHHHHHHHHhc---cCCCceEEcCchHHHHHhhCCCC--CCceEEEecCC
Confidence            456777666544443   45789999999999888887643   23459999998876   112322  33458899987


Q ss_pred             -----ChhchHHHHHhccc--CCCEEEEEeCCH--HHHHHHHHHHHh-cCccc
Q 026506          191 -----QPWLAIPSAKKMLK--QDGILCSFSPCI--EQVQRSCESLRL-NFTGK  233 (237)
Q Consensus       191 -----~~~~~l~~~~~~L~--~gG~l~~~~~~~--~~~~~~~~~l~~-~f~~v  233 (237)
                           +...+.+.+.+.++  |.|+++++-|..  ...+.+.+.+++ +.+.+
T Consensus       160 YE~k~ey~~v~~~l~~a~kr~~~g~~~iWYPi~~~~~~~~~~~~l~~~~~k~l  212 (271)
T d2oo3a1         160 YERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISSKSV  212 (271)
T ss_dssp             CCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHHHCSSEE
T ss_pred             cCCHHHHHHHHHHHHHHHHhCCCceEEEEeeccCcHHHHHHHHHHHhcCccce
Confidence                 22334555555555  788888887654  556778888877 65443

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=85.58  E-value=3.4  Score=27.09  Aligned_cols=113  Identities=12%  Similarity=0.074  Sum_probs=58.1

Q ss_pred             CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH----cCCCCcEEEE-EccccCCCCCCCCCCCCC
Q 026506          110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER----TGVSSFVTVG-VRDIQGQGFPDEFSGLAD  183 (237)
Q Consensus       110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~----~~~~~~i~~~-~~d~~~~~~~~~~~~~~D  183 (237)
                      .+|..+|+|. |......+...+-..++..+|++++..+....-...    ....  ..+. ..|..  .+     ...|
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~--~~i~~~~~~~--~~-----~dad   71 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFD--TKVTGSNDYA--DT-----ANSD   71 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCC--CEEEEESCGG--GG-----TTCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhccc--ceEEecCCHH--Hh-----cCCe
Confidence            3678899877 544333333333346899999998766543322211    1222  3333 33332  12     3579


Q ss_pred             EEEEeCCChh--------------chHHHHHhc---ccCCCEEEEEeCCHHHHHHHHHHHHh-cCccc
Q 026506          184 SIFLDLPQPW--------------LAIPSAKKM---LKQDGILCSFSPCIEQVQRSCESLRL-NFTGK  233 (237)
Q Consensus       184 ~v~~~~~~~~--------------~~l~~~~~~---L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v  233 (237)
                      +|++....+.              ..+....+.   ..|++.+++++...+.+....  ++. +|+.-
T Consensus        72 vvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvd~~~~~~--~~~sg~p~~  137 (142)
T d1guza1          72 IVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA--WVRSGLPKE  137 (142)
T ss_dssp             EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHHHHHH--HHHHCSCGG
T ss_pred             EEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCChHHHHHHH--HHHhCCChH
Confidence            9887643221              122222222   348999887765555444332  222 56543

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.49  E-value=2.4  Score=28.09  Aligned_cols=116  Identities=14%  Similarity=0.190  Sum_probs=57.2

Q ss_pred             EEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506          111 LVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD  188 (237)
Q Consensus       111 ~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~  188 (237)
                      +|..+|+ |. |....+++...+-..++..+|+++...+ +.+. ...............   ...++.. ...|+|++.
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~-a~Dl-~~~~~~~~~~~~~~~---~~~~~~~-~~aDivVit   75 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGV-AADL-SHIETRATVKGYLGP---EQLPDCL-KGCDVVVIP   75 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHH-HHHH-TTSSSSCEEEEEESG---GGHHHHH-TTCSEEEEC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchh-hHHH-hhhhhhcCCCeEEcC---CChHHHh-CCCCEEEEC
Confidence            6889996 87 6555555544333478999999764322 2221 111111111111111   1111100 458999875


Q ss_pred             CCChh------------------chHHHHHhcccCCCEEEEEeCCHHHHHH-HHHHHHh--cCccc
Q 026506          189 LPQPW------------------LAIPSAKKMLKQDGILCSFSPCIEQVQR-SCESLRL--NFTGK  233 (237)
Q Consensus       189 ~~~~~------------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~-~~~~l~~--~f~~v  233 (237)
                      ...+.                  +..+.+.+. .|.+.+++++...+.+.- +.+.++.  +|+.-
T Consensus        76 ag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPvD~~t~~~~~~~kk~~~~p~~  140 (144)
T d1mlda1          76 AGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIISNPVNSTIPITAEVFKKHGVYNPN  140 (144)
T ss_dssp             CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTT
T ss_pred             CCcCCCCCCCcchHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhHHHHHHHHHHhcCCCcc
Confidence            43211                  123333333 689999988766654433 3344544  46543

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=85.30  E-value=1.1  Score=31.16  Aligned_cols=98  Identities=14%  Similarity=0.130  Sum_probs=60.5

Q ss_pred             CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      .|.+|..+|.|. |.-...++..+  ..+|+++|.++.           .+...    ...++. ..+     ...|+|+
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~--g~~v~~~d~~~~-----------~~~~~----~~~~l~-ell-----~~sDiv~   97 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAAL--GAQVRGFSRTPK-----------EGPWR----FTNSLE-EAL-----REARAAV   97 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHT--TCEEEEECSSCC-----------CSSSC----CBSCSH-HHH-----TTCSEEE
T ss_pred             cCceEEEeccccccccceeeeecc--cccccccccccc-----------cccee----eeechh-hhh-----hccchhh
Confidence            578999999999 66666666665  368999997642           11000    011111 111     3589999


Q ss_pred             EeCCChhch----HHHHHhcccCCCEEEEEeCCH-HHHHHHHHHHHh
Q 026506          187 LDLPQPWLA----IPSAKKMLKQDGILCSFSPCI-EQVQRSCESLRL  228 (237)
Q Consensus       187 ~~~~~~~~~----l~~~~~~L~~gG~l~~~~~~~-~~~~~~~~~l~~  228 (237)
                      +..|...++    =++.++.||+|..|+-.+-.. -.-+.+.+.|++
T Consensus        98 ~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~  144 (181)
T d1qp8a1          98 CALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKE  144 (181)
T ss_dssp             ECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHH
T ss_pred             cccccccccccccccceeeeccccceEEeccccccccchhhhhhccc
Confidence            887755432    367788999999888553211 123555667776

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=85.18  E-value=4  Score=27.66  Aligned_cols=75  Identities=12%  Similarity=0.118  Sum_probs=41.1

Q ss_pred             CCEEEEEccCccHHHHH---HHHHhCC--CcEEEEEeCCHHHHHHH----HHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506          109 GCLVLESGTGSGSLTTS---LARAVAP--TGHVYTFDFHEQRAASA----REDFERTGVSSFVTVGVRDIQGQGFPDEFS  179 (237)
Q Consensus       109 ~~~vldiG~G~G~~~~~---~~~~~~~--~~~v~~vD~~~~~~~~a----~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  179 (237)
                      .-+|..+|+|+.+....   ++.....  ..+++.+|++++.++..    +......+.+.++. ...|.. ..+     
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~-eal-----   75 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFA-ATTDPE-EAF-----   75 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEE-EESCHH-HHH-----
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceE-ecCChh-hcc-----
Confidence            35789999998543322   2222211  14899999999987643    23333344443232 333432 112     


Q ss_pred             CCCCEEEEeCC
Q 026506          180 GLADSIFLDLP  190 (237)
Q Consensus       180 ~~~D~v~~~~~  190 (237)
                      ...|+|+....
T Consensus        76 ~~AD~Vvitag   86 (167)
T d1u8xx1          76 TDVDFVMAHIR   86 (167)
T ss_dssp             SSCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            35899887653

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.98  E-value=3.5  Score=29.90  Aligned_cols=62  Identities=13%  Similarity=0.165  Sum_probs=42.1

Q ss_pred             CCEEEEEccCccHHHHHHHHHh----CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC
Q 026506          109 GCLVLESGTGSGSLTTSLARAV----APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG  171 (237)
Q Consensus       109 ~~~vldiG~G~G~~~~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~  171 (237)
                      |..+|.-|+++ +++..++..+    ....+|+.++.+++.++.+.+.+...+...++.+...|+.+
T Consensus         6 gKvalITGas~-GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~   71 (259)
T d1oaaa_           6 CAVCVLTGASR-GFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGT   71 (259)
T ss_dssp             SEEEEESSCSS-HHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTS
T ss_pred             CCEEEEeCCCC-HHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCC
Confidence            44445545544 5555555543    23468999999999999888877655544558888899875

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=84.50  E-value=1  Score=32.81  Aligned_cols=51  Identities=18%  Similarity=0.193  Sum_probs=33.5

Q ss_pred             CCCCEEEEEccCcc-HHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcC
Q 026506          107 VPGCLVLESGTGSG-SLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTG  157 (237)
Q Consensus       107 ~~~~~vldiG~G~G-~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~  157 (237)
                      -.|.++|..|+++| +++..+++.+ ....+|+..+.+++..+.+.+.....+
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~   55 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLG   55 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcC
Confidence            35789999988663 3433333332 124789999999887777776655554

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=84.45  E-value=2.8  Score=30.43  Aligned_cols=76  Identities=16%  Similarity=0.214  Sum_probs=48.9

Q ss_pred             EEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC------CCCCCC
Q 026506          111 LVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFSGLA  182 (237)
Q Consensus       111 ~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~------~~~~~~  182 (237)
                      .+|..|++. +++..++..+ ....+|+.+|.+++.++.+.+.+...+  .++.+...|+.+.. ...      ..-++.
T Consensus         3 ValITGas~-GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   79 (255)
T d1gega_           3 VALVTGAGQ-GIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLGGF   79 (255)
T ss_dssp             EEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred             EEEEcCCcc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHhCCc
Confidence            346667654 4444444433 234789999999999998888777665  33778888987511 000      012679


Q ss_pred             CEEEEeC
Q 026506          183 DSIFLDL  189 (237)
Q Consensus       183 D~v~~~~  189 (237)
                      |+++.+.
T Consensus        80 DilVnnA   86 (255)
T d1gega_          80 DVIVNNA   86 (255)
T ss_dssp             CEEEECC
T ss_pred             cEEEecc
Confidence            9988764

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=84.18  E-value=0.2  Score=37.91  Aligned_cols=50  Identities=18%  Similarity=0.157  Sum_probs=37.5

Q ss_pred             EEEEEccccC--CCCCCCCCCCCCEEEEeCCCh-------------------hchHHHHHhcccCCCEEEEEeC
Q 026506          162 VTVGVRDIQG--QGFPDEFSGLADSIFLDLPQP-------------------WLAIPSAKKMLKQDGILCSFSP  214 (237)
Q Consensus       162 i~~~~~d~~~--~~~~~~~~~~~D~v~~~~~~~-------------------~~~l~~~~~~L~~gG~l~~~~~  214 (237)
                      -.+..+|..+  ..+++   +++|+|+.|+|-.                   ...+..+.+.|+++|.+++...
T Consensus        13 ~~l~~GD~le~l~~l~~---~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~   83 (320)
T d1booa_          13 GSMYIGDSLELLESFPE---ESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG   83 (320)
T ss_dssp             EEEEESCHHHHGGGSCS---SCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CEEEehhHHHHHhhCcc---CCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccccc
Confidence            4677888775  34554   7899999998721                   1358899999999999987653

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=84.10  E-value=0.25  Score=34.53  Aligned_cols=45  Identities=13%  Similarity=0.054  Sum_probs=29.2

Q ss_pred             CCCEEEEEccCccHHH-HHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026506          108 PGCLVLESGTGSGSLT-TSLARAVAPTGHVYTFDFHEQRAASAREDF  153 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~-~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~  153 (237)
                      .+.+||.+|+|.-.-+ ...+... +..+++.++.+++..+.+...+
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~-g~~~i~i~nR~~~~~~~~~~l~   62 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIE-GLKEIKLFNRRDEFFDKALAFA   62 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEECSSTTHHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhc-CCceEeeeccchHHHHHHHHHH
Confidence            5689999999863333 2233333 4578999998877666655443

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=83.99  E-value=4.6  Score=27.33  Aligned_cols=73  Identities=18%  Similarity=0.132  Sum_probs=45.5

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      .++.+|+.+|+|.-.-++..+-.-+ ..+++.+..+.+..+...+.+...+  + +.....|..    ..   ..+|+++
T Consensus        16 ~~~k~vlIlGaGGaarai~~aL~~~-~~~i~I~nR~~~~a~~l~~~~~~~~--~-~~~~~~~~~----~~---~~~diiI   84 (171)
T d1p77a1          16 RPNQHVLILGAGGATKGVLLPLLQA-QQNIVLANRTFSKTKELAERFQPYG--N-IQAVSMDSI----PL---QTYDLVI   84 (171)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHT-TCEEEEEESSHHHHHHHHHHHGGGS--C-EEEEEGGGC----CC---SCCSEEE
T ss_pred             CCCCEEEEECCcHHHHHHHHHHccc-CceeeeccchHHHHHHHHHHHhhcc--c-cchhhhccc----cc---cccceee
Confidence            4678999999987443332222223 3789999999988887777765432  2 444443322    11   5689987


Q ss_pred             EeCC
Q 026506          187 LDLP  190 (237)
Q Consensus       187 ~~~~  190 (237)
                      ...|
T Consensus        85 N~tp   88 (171)
T d1p77a1          85 NATS   88 (171)
T ss_dssp             ECCC
T ss_pred             eccc
Confidence            6543

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=83.97  E-value=0.16  Score=36.11  Aligned_cols=35  Identities=14%  Similarity=-0.095  Sum_probs=26.7

Q ss_pred             ccCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccc
Q 026506           11 SFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSD   53 (237)
Q Consensus        11 ~~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   53 (237)
                      +....+++||||++....+        |+.|..|..|....|+
T Consensus        77 ~~V~~~~~GdrV~v~~~~~--------cg~c~~c~~g~~~~C~  111 (197)
T d2fzwa1          77 EGVTKLKAGDTVIPLYIPQ--------CGECKFCLNPKTNLCQ  111 (197)
T ss_dssp             TTCCSCCTTCEEEECSSCC--------CSCSHHHHCTTCCCCC
T ss_pred             CCceecCCCCEEEEccccc--------cccccccccCccccCc
Confidence            4457899999999988777        7777777777665553

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=83.96  E-value=3  Score=28.06  Aligned_cols=51  Identities=18%  Similarity=0.063  Sum_probs=31.5

Q ss_pred             HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026506          100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASARE  151 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~  151 (237)
                      +.+.+.-..+.+||.+|+|. |......+... +..+++.+..+.+..+...+
T Consensus        15 a~~~~~~l~~~~ilviGaG~~g~~v~~~L~~~-g~~~i~v~nRt~~ka~~l~~   66 (159)
T d1gpja2          15 AERELGSLHDKTVLVVGAGEMGKTVAKSLVDR-GVRAVLVANRTYERAVELAR   66 (159)
T ss_dssp             HHHHHSCCTTCEEEEESCCHHHHHHHHHHHHH-CCSEEEEECSSHHHHHHHHH
T ss_pred             HHHHhCCcccCeEEEECCCHHHHHHHHHHHhc-CCcEEEEEcCcHHHHHHHHH
Confidence            34444445678999999977 55444433333 33578888887665544333

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.96  E-value=2.3  Score=31.23  Aligned_cols=80  Identities=15%  Similarity=0.198  Sum_probs=48.5

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC-------CCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-------EFS  179 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-------~~~  179 (237)
                      .|.++|..|+++| ++..++..+ ....+|+.++.+++.++.+.+....... ........|........       ...
T Consensus        13 ~GK~alITGassG-IG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~   90 (269)
T d1xu9a_          13 QGKKVIVTGASKG-IGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGA-ASAHYIAGTMEDMTFAEQFVAQAGKLM   90 (269)
T ss_dssp             TTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC-SEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhc-ccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence            5789999888775 333333332 2247999999999999888776554332 33666666665311000       012


Q ss_pred             CCCCEEEEeC
Q 026506          180 GLADSIFLDL  189 (237)
Q Consensus       180 ~~~D~v~~~~  189 (237)
                      +..|+++.+.
T Consensus        91 g~~~~li~na  100 (269)
T d1xu9a_          91 GGLDMLILNH  100 (269)
T ss_dssp             TSCSEEEECC
T ss_pred             CCcccccccc
Confidence            5678877654

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=83.61  E-value=2.5  Score=31.37  Aligned_cols=79  Identities=14%  Similarity=0.203  Sum_probs=49.8

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEEEccccCCC-CC------CCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFE-RTGVSSFVTVGVRDIQGQG-FP------DEF  178 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~i~~~~~d~~~~~-~~------~~~  178 (237)
                      .|.++|..|+..| ++.+++..+ ....+|+.+|.++..++.+.+.+. ..+  ....+...|+.+.. ..      ...
T Consensus        24 ~gK~alITGas~G-IG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~  100 (294)
T d1w6ua_          24 QGKVAFITGGGTG-LGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTG--NKVHAIQCDVRDPDMVQNTVSELIKV  100 (294)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS--SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcC--CceEEEEecccChHHHHHHhhhhhhh
Confidence            5788999887654 554554443 234799999999988877666554 333  33777888886511 00      011


Q ss_pred             CCCCCEEEEeC
Q 026506          179 SGLADSIFLDL  189 (237)
Q Consensus       179 ~~~~D~v~~~~  189 (237)
                      .+..|+++.+.
T Consensus       101 ~g~iDilvnnA  111 (294)
T d1w6ua_         101 AGHPNIVINNA  111 (294)
T ss_dssp             TCSCSEEEECC
T ss_pred             ccccchhhhhh
Confidence            26789988654

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.96  E-value=4.1  Score=30.35  Aligned_cols=83  Identities=12%  Similarity=0.151  Sum_probs=52.0

Q ss_pred             CCCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEEEccccCCC-CCC-----
Q 026506          107 VPGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTG---VSSFVTVGVRDIQGQG-FPD-----  176 (237)
Q Consensus       107 ~~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~i~~~~~d~~~~~-~~~-----  176 (237)
                      -.|.++|..|++.| ++..++..+ ....+|+.++.+++.++.+.+.+....   ...++.....|+.+.. ...     
T Consensus        10 L~gKvalITGas~G-IG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   88 (297)
T d1yxma1          10 LQGQVAIVTGGATG-IGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   88 (297)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence            46889999887664 444444332 234789999999998887777665321   1234778888987511 110     


Q ss_pred             -CCCCCCCEEEEeCC
Q 026506          177 -EFSGLADSIFLDLP  190 (237)
Q Consensus       177 -~~~~~~D~v~~~~~  190 (237)
                       ...+..|+++.+..
T Consensus        89 ~~~~G~iDiLVnnAg  103 (297)
T d1yxma1          89 LDTFGKINFLVNNGG  103 (297)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCeEEEEeecc
Confidence             01157999887653

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=82.87  E-value=4.6  Score=26.54  Aligned_cols=115  Identities=12%  Similarity=0.111  Sum_probs=58.1

Q ss_pred             CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEE-EccccCCCCCCCCCCCCCEEE
Q 026506          110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER-TGVSSFVTVG-VRDIQGQGFPDEFSGLADSIF  186 (237)
Q Consensus       110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~i~~~-~~d~~~~~~~~~~~~~~D~v~  186 (237)
                      .+|..+|+|. |....+.+...+-..++..+|+++++.+--..-+.. ........+. ..|..  ..     ...|+|+
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~--~~-----~daDvVV   74 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPE--IC-----RDADMVV   74 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGG--GG-----TTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHH--Hh-----hCCcEEE
Confidence            4788899887 555444444434446899999998765421111111 1111113333 33332  12     3479998


Q ss_pred             EeCCChh--------------chHHHHHh---cccCCCEEEEEeCCHHHHHHHHHHHHhcCcc
Q 026506          187 LDLPQPW--------------LAIPSAKK---MLKQDGILCSFSPCIEQVQRSCESLRLNFTG  232 (237)
Q Consensus       187 ~~~~~~~--------------~~l~~~~~---~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~  232 (237)
                      +....+.              ..++.+.+   ...|+|.+++.+...+.+-.....+. +|+.
T Consensus        75 itaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvDvmt~~~~~~s-g~p~  136 (143)
T d1llda1          75 ITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVAQKLT-GLPE  136 (143)
T ss_dssp             ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHH-TCCT
T ss_pred             EecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCchHHHHHHHHHHH-CCCh
Confidence            7543221              12222222   23588988877655554443333221 5653

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=82.62  E-value=0.36  Score=36.99  Aligned_cols=74  Identities=18%  Similarity=0.175  Sum_probs=42.1

Q ss_pred             CEEEEEccCccHHHHHHHHHh-CCCcEEEEEeC----CHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCCCC-CCCC
Q 026506          110 CLVLESGTGSGSLTTSLARAV-APTGHVYTFDF----HEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEF-SGLA  182 (237)
Q Consensus       110 ~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~----~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~-~~~~  182 (237)
                      ++||..| |+|.++.+++..+ ....+|+++|.    ........+.    ... .++.++.+|+.+.. +.... ..++
T Consensus         1 MKiLItG-~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~----~~~-~~~~~~~~Dl~d~~~l~~~~~~~~~   74 (338)
T d1udca_           1 MRVLVTG-GSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER----LGG-KHPTFVEGDIRNEALMTEILHDHAI   74 (338)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHH----HHT-SCCEEEECCTTCHHHHHHHHHHTTC
T ss_pred             CEEEEEC-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHh----hcC-CCCEEEEeecCCHHHHHHHHhccCC
Confidence            4688886 6677777776654 23368999984    2222332222    112 23888999987621 11100 1468


Q ss_pred             CEEEEeC
Q 026506          183 DSIFLDL  189 (237)
Q Consensus       183 D~v~~~~  189 (237)
                      |.|++-+
T Consensus        75 d~ViHlA   81 (338)
T d1udca_          75 DTVIHFA   81 (338)
T ss_dssp             SEEEECC
T ss_pred             CEEEECC
Confidence            9988643

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=82.28  E-value=2.2  Score=31.07  Aligned_cols=78  Identities=10%  Similarity=0.125  Sum_probs=49.6

Q ss_pred             CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC------CCC
Q 026506          108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFS  179 (237)
Q Consensus       108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~------~~~  179 (237)
                      .|.++|..|++. +++..++..+ ....+|+.++.+++.++.+.+.+.   ....+.+...|+.+.. ...      ...
T Consensus         5 ~gK~alVTGas~-GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (251)
T d1zk4a1           5 DGKVAIITGGTL-GIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVG---TPDQIQFFQHDSSDEDGWTKLFDATEKAF   80 (251)
T ss_dssp             TTCEEEETTTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---CTTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC---CCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            477888888655 4444444332 234789999999998887777653   2345888899987511 100      012


Q ss_pred             CCCCEEEEeC
Q 026506          180 GLADSIFLDL  189 (237)
Q Consensus       180 ~~~D~v~~~~  189 (237)
                      ++.|+++.+.
T Consensus        81 G~iDiLVnnA   90 (251)
T d1zk4a1          81 GPVSTLVNNA   90 (251)
T ss_dssp             SSCCEEEECC
T ss_pred             CCceEEEecc
Confidence            5799988764

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=81.79  E-value=1.6  Score=30.28  Aligned_cols=40  Identities=15%  Similarity=0.191  Sum_probs=26.7

Q ss_pred             CEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026506          110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASARE  151 (237)
Q Consensus       110 ~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~  151 (237)
                      ++|..+|.|-  ++..+|..+....+|+++|++++.++..++
T Consensus         1 MkI~ViGlG~--vGl~~a~~~a~g~~V~g~Din~~~v~~l~~   40 (196)
T d1dlja2           1 MKIAVAGSGY--VGLSLGVLLSLQNEVTIVDILPSKVDKINN   40 (196)
T ss_dssp             CEEEEECCSH--HHHHHHHHHTTTSEEEEECSCHHHHHHHHT
T ss_pred             CEEEEECCCh--hHHHHHHHHHCCCcEEEEECCHHHHHHHhh
Confidence            4678887765  333333333335799999999998887654

>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein DctD, receiver domain
species: Sinorhizobium meliloti [TaxId: 382]

Probab=81.69  E-value=3.3  Score=27.00  Aligned_cols=87  Identities=13%  Similarity=0.184  Sum_probs=54.6

Q ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC--CCCCCCCCCCCCEEEEeCCCh----hchHHHHHhcccCCCE
Q 026506          135 HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLADSIFLDLPQP----WLAIPSAKKMLKQDGI  208 (237)
Q Consensus       135 ~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~~~~D~v~~~~~~~----~~~l~~~~~~L~~gG~  208 (237)
                      +|..+|=++...+..+..+...|..  +.. ..|..+  ..+..   ..+|+|++|..-|    .++++.+.+ ..|+--
T Consensus         2 ~ILiVDDd~~~~~~l~~~L~~~g~~--v~~-~~~~~~al~~l~~---~~~dlil~D~~mP~~~G~el~~~lr~-~~~~~p   74 (140)
T d1qkka_           2 SVFLIDDDRDLRKAMQQTLELAGFT--VSS-FASATEALAGLSA---DFAGIVISDIRMPGMDGLALFRKILA-LDPDLP   74 (140)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCE--EEE-ESCHHHHHHTCCT---TCCSEEEEESCCSSSCHHHHHHHHHH-HCTTSC
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCE--EEE-eCChHHHHHHHhc---cCcchHHHhhccCCCCHHHHHHHHHH-hCCCCc
Confidence            5788999999999999988887743  322 233332  22232   6799999986433    245666554 356666


Q ss_pred             EEEEeCCHHHHHHHHHHHHhc
Q 026506          209 LCSFSPCIEQVQRSCESLRLN  229 (237)
Q Consensus       209 l~~~~~~~~~~~~~~~~l~~~  229 (237)
                      +++++... ..+...+.++.|
T Consensus        75 vI~lT~~~-~~~~~~~a~~~G   94 (140)
T d1qkka_          75 MILVTGHG-DIPMAVQAIQDG   94 (140)
T ss_dssp             EEEEECGG-GHHHHHHHHHTT
T ss_pred             EEEEECCC-CHHHHHHHHHcC
Confidence            66666544 345566666654

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.92  E-value=3  Score=26.55  Aligned_cols=49  Identities=16%  Similarity=0.183  Sum_probs=36.8

Q ss_pred             CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeC--------CHHHHHHHHHHHHHcCC
Q 026506          108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDF--------HEQRAASAREDFERTGV  158 (237)
Q Consensus       108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~--------~~~~~~~a~~~~~~~~~  158 (237)
                      .+.+++.+|+|. |.-...++..+  ..+|+.++.        ++++.+.+++.+++.|+
T Consensus        22 ~p~~~vIiG~G~ig~E~A~~l~~l--G~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV   79 (122)
T d1v59a2          22 IPKRLTIIGGGIIGLEMGSVYSRL--GSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGL   79 (122)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEECCCchHHHHHHHHHhh--CcceeEEEeccccchhhhhhhHHHHHHHHHhccc
Confidence            347999999997 66555566665  468888875        45788888888888875

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.66  E-value=1.6  Score=30.59  Aligned_cols=39  Identities=15%  Similarity=0.116  Sum_probs=27.2

Q ss_pred             CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026506          110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAR  150 (237)
Q Consensus       110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~  150 (237)
                      ++|..+|+|- |.......+..  ..+|+++|.+++.++...
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~--g~~V~g~D~n~~~i~~ln   40 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSAR--GHEVIGVDVSSTKIDLIN   40 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHH
T ss_pred             CEEEEECCCHhHHHHHHHHHhC--CCcEEEEeCCHHHHHHhc
Confidence            4688899998 54333333332  368999999999887664

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=80.63  E-value=1.7  Score=28.74  Aligned_cols=78  Identities=19%  Similarity=0.289  Sum_probs=41.8

Q ss_pred             CccHHHHHHHHHhCCCcEE-EEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCChhchH
Q 026506          118 GSGSLTTSLARAVAPTGHV-YTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAI  196 (237)
Q Consensus       118 G~G~~~~~~~~~~~~~~~v-~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l  196 (237)
                      |.|.++..++..+.....+ ...+.+++..+...+.   .+..      ..+..+  ..    ...|+||+..++.  .+
T Consensus         6 G~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~---~~~~------~~~~~~--~~----~~~DiVil~v~d~--~i   68 (153)
T d2i76a2           6 GTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEV---YGGK------AATLEK--HP----ELNGVVFVIVPDR--YI   68 (153)
T ss_dssp             SCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHH---TCCC------CCSSCC--CC----C---CEEECSCTT--TH
T ss_pred             eCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhc---cccc------ccchhh--hh----ccCcEEEEeccch--hh
Confidence            5666777777766433343 3567777777766553   2211      112211  11    4579999988753  56


Q ss_pred             HHHHhcccCCCEEEEE
Q 026506          197 PSAKKMLKQDGILCSF  212 (237)
Q Consensus       197 ~~~~~~L~~gG~l~~~  212 (237)
                      +.+...|+..|.+++-
T Consensus        69 ~~v~~~l~~~~~ivi~   84 (153)
T d2i76a2          69 KTVANHLNLGDAVLVH   84 (153)
T ss_dssp             HHHHTTTCCSSCCEEE
T ss_pred             hHHHhhhcccceeeee
Confidence            7777778755555533

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=80.19  E-value=5.2  Score=25.32  Aligned_cols=56  Identities=14%  Similarity=0.041  Sum_probs=35.8

Q ss_pred             HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCC---------HHHHHHHHHHHHHcC
Q 026506          100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFH---------EQRAASAREDFERTG  157 (237)
Q Consensus       100 ~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~---------~~~~~~a~~~~~~~~  157 (237)
                      +.+.+....+.+|+.+|.|. |.-....+...  ..+|+.+|.+         ++..+..++.++..|
T Consensus        21 i~~~~~~~~~k~vvViGgG~iG~E~A~~l~~~--g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~g   86 (123)
T d1nhpa2          21 LKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKA--GKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANN   86 (123)
T ss_dssp             HHHHHTCTTCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTT
T ss_pred             HHHHhhccCCCEEEEECChHHHHHHHHHhhcc--ceEEEEEEecCcccccccchhhHHHHHHHhhcCC
Confidence            44444555678999999988 54444444443  4688888753         445566666666655