Citrus Sinensis ID: 026512

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
Protein Sequence
MASLTRSLKRCQLLTKSMLLNSTKQNPSLFKSNLRNPVSQISKRNYISEMRKSAFEGNILRLLRNEIQYELERSSPKQPITKFNSFTVDDRPGEQWVRLTRKFGENEDIKIEATMFDGSIPVSKAGVGEDVKLHSTLIVNISKGDEEVLEMMCSAWPDSIEITKLFVRGNDKLSADPYVGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSYIENK
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHccccccccccccccccccccccccccHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccEEEEcccccEEEEEEEcccccEEEEEEEEcccccccccccccccccccEEEEEEEEEccccEEEEEEEEcccEEEEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHccccccccHcccccHHHHHHHHHHHHHHHHHcccccccccccccEEEEEcccccEEEEEEEcccccEEEEEEEcccccccccccccccccccccEEEEEEEcccccEEEEEEEEccccEEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MASLTRSLKRCQLLTKSMLlnstkqnpslfksnlrnpvsqiskRNYISEMRKSAFEGNILRLLRNEIQYELersspkqpitkfnsftvddrpgeQWVRLTRkfgenedikieatmfdgsipvskagvgedvKLHSTLIVNISKGDEEVLEMMCSAWPDSIEITKLFVrgndklsadpyvgpefkeLDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSYIENK
Flexible Loop (DISEMBL)
masltrslKRCQLLTKSMllnstkqnpslfksnlrnpvsqisKRNYISEMRKSAFEGNILRLLRNEIQYElersspkqpitkfnsftvddrpgeQWVRLTrkfgenedikieatmfdgsipvsKAGVGEDVKLHSTLIVNISKGDEEVLEMMCSAWPDSIEITKLFVRGNDKLSADPYVGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYlknkdktefVRWMQAVKSYIENK
Low Complexity Region (SEG)
MASLTRSLKRCQLLTKSMLLNSTKQNPSLFKSNLRNPVSQISKRNYISEMRKSAFEGNILRLLRNEIQYELERSSPKQPITKFNSFTVDDRPGEQWVRLTRKFGENEDIKIEATMFDGSIPVSKAGVGEDVKLHSTLIVNISKGDEEVLEMMCSAWPDSIEITKLFVRGNDKLSADPYVGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSYIENK
Disordered region (IsUnstruct)
*****************************************************AFEGNILRLLRNEIQYE************FNSFTVDDRPGEQWVRLTRKFGENEDIKIEATMFDGSIPVSKAGVGEDVKLHSTLIVNISKGDEEVLEMMCSAWPDSIEITKLFVRGNDKLSADPYVGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSY****
Disordered Region (DISOPRED)
*************************************************************LLRNEI******************FTVDDRPGEQWVRLTRKFGENEDIKIEATMFD****************HSTLIVNISKGDEEVLEMMCSAWPDSIEITKLFVRGNDKLSADPYVGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSYI***
Disordered Region (DISEMBL)
********KRCQLLTKSMLLNSTKQNPSLFKSNLRNPVSQISKRNYISEMRKSAFEGNILRLLRNEIQYELERSSPKQPITKFNSFTVDDRPGEQWVRLTRKFGENEDIKIEATMFDGSIPVSKAGVGEDVKLHSTLIVNISKGDEEVLEMMCSAWPDSIEITKLFVRGNDKLSADPYVGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSYIENK
Disordered Region (DISPRO)
*****RSLKRCQLLTKSMLLNSTKQ***L***NLRNPVSQISKRNYISE*RKSAFEGNILRLLRNEIQYELERSSPKQPITKFNSFTVDDRPGEQWVRLTRKFGENEDIKIEATMFDGS************KLHSTLIVNISKGDEEVLEMMCSAWPDSIEITKLFVRGNDKLSADPYVGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSYIENK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASLTRSLKRCQLLTKSMLLNSTKQNPSLFKSNLRNPVSQISKRNYISEMRKSAFEGNILRLLRNEIQYELERSSPKQPITKFNSFTVDDRPGEQWVRLTRKFGENEDIKIEATMFDGSIPVSKAGVGEDVKLHSTLIVNISKGDEEVLEMMCSAWPDSIEITKLFVRGNDKLSADPYVGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSYIENK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	237	2.2.26 [Sep-21-2011]
Q8W487	250	Uncharacterized protein A	no	no	0.789	0.748	0.305	7e-18
O22288	240	Uncharacterized protein A	no	no	0.607	0.6	0.288	2e-10
O94675	269	Mitochondrial acidic prot	yes	no	0.447	0.394	0.316	6e-10
P40513	266	Mitochondrial acidic prot	yes	no	0.240	0.214	0.421	1e-08
Q54JD2	321	Putative uncharacterized	yes	no	0.447	0.330	0.281	0.0002

>sp|Q8W487|YB95_ARATH Uncharacterized protein At2g39795, mitochondrial OS=Arabidopsis thaliana GN=At2g39795 PE=1 SV=1

 Score = 90.9 bits (224), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 104/203 (51%), Gaps = 16/203 (7%)

Query: 45  NYISEMRKSAFEGNILRLLRNEIQYELERS---SPKQPITKFNSFTVDDRPGEQWVRLTR 101
           NY + + + + E  ++R++ +EI   L+     S ++       F ++D+PG Q V LTR
Sbjct: 51  NYSTAIDRISSEQTLIRVIDSEINSALQSDNIDSDEEMTPGSFPFRIEDKPGNQNVTLTR 110

Query: 102 KFGENEDIKIEATM----FDGSIPVSKAGVGEDVKLHSTLIVNISKGDEEVLEMMCSAWP 157
            +   E IK+  +M     D +        G   +    L+V ++K     LE  C A+P
Sbjct: 111 DYN-GEHIKVVVSMPSLVSDENDDDDDDDEGPSNESSIPLVVTVTKKSGLTLEFSCMAFP 169

Query: 158 DSIEITKLFVRG-----NDKLSADPYVGPEFKELDDELQDSLYEFLEERGINEQLTAFLH 212
           D I I  L V+       D+L+ +   GP+F++LD+ L+ + Y+FLE RG+    T FLH
Sbjct: 170 DEIAIDALSVKHPGDSLEDQLANE---GPDFEDLDENLKKTFYKFLEIRGVKASTTNFLH 226

Query: 213 EYLKNKDKTEFVRWMQAVKSYIE 235
           EY+  K   E+  W++ VK ++E
Sbjct: 227 EYMTRKVNREYFLWLKNVKEFME 249

Arabidopsis thaliana (taxid: 3702)

>sp|O22288|Y2979_ARATH Uncharacterized protein At2g39790, mitochondrial OS=Arabidopsis thaliana GN=At2g39790 PE=3 SV=2

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 79/149 (53%), Gaps = 5/149 (3%)

Query: 88  VDDRPGEQWVRLTRKFGENEDIKIEATM-FDGSIPVSKAGVGEDVKLHSTLIVNISKGDE 146
           + D+PG+Q V LT  + + E I ++  M + G   +   G   D +L   L+V + K + 
Sbjct: 95  IRDKPGDQSVTLTAYYND-ERIHVDVGMPYLGDDVIDVFGPNND-ELSFPLVVTVIKKNG 152

Query: 147 EVLEMMCSAWPDSIEITKLFVRGNDKLSADPYVGPEFKELDDELQDSLYEFLEERGINEQ 206
             +E  C A+ D I++T L V  + +        P FK LDD L+ + + +L  R ++  
Sbjct: 153 VSIEFTCQAYADYIDLTDLTVH-DYQYQMGETDWPRFKNLDDNLKKAFHRYLATR-LDAN 210

Query: 207 LTAFLHEYLKNKDKTEFVRWMQAVKSYIE 235
           +T  LH+Y+ +K K E++ W++ V  +++
Sbjct: 211 ITKLLHKYMVSKIKREYLLWLKNVNKFVD 239

Arabidopsis thaliana (taxid: 3702)

>sp|O94675|MAM33_SCHPO Mitochondrial acidic protein mam33 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC776.07 PE=3 SV=1

 Score = 64.7 bits (156), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 11/117 (9%)

Query: 129 EDVKLHSTLIVNISKGDEEVLEMMCSAWPDSIEITKL-FVRGNDKLSADP---------- 177
           ED+       + ISK     L    +A  D  +I  + F +  D L++D           
Sbjct: 152 EDLGRFQPCTIEISKPGNGALVFEATALDDGFDIENIYFSKDIDMLTSDSLEAEWKRRKQ 211

Query: 178 YVGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSYI 234
           Y+GP FKELD ELQD  + +LEER I+E L++F+  +   K+  E++ W+++V+ ++
Sbjct: 212 YLGPSFKELDPELQDLFHSYLEERKIDESLSSFIVSFGLTKELKEYINWLESVRQFL 268

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P40513|MAM33_YEAST Mitochondrial acidic protein MAM33 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAM33 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 39/57 (68%)

Query: 178 YVGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSYI 234
           Y GP F  LD+ELQ+SL  +LE RG+NE+L +F+  Y + K+  E++ W++ +K + 
Sbjct: 209 YHGPPFSNLDEELQESLEAYLESRGVNEELASFISAYSEFKENNEYISWLEKMKKFF 265

Not known. Binds to the sorting sequence of cytochrome b2.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q54JD2|Y8137_DICDI Putative uncharacterized protein DDB_G0288137 OS=Dictyostelium discoideum GN=DDB_G0288137 PE=4 SV=1

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 4/110 (3%)

Query: 126 GVGEDVKLHSTLIVNISKGDEEV-LEMMCSAWPDSIEITKLFVRGNDKLSADPYVGPEFK 184
           G  ED   H   I    KG+    L   C A  D       F +G    + +P    +  
Sbjct: 212 GAEEDSHEHPFEIEVTPKGNASGKLTFGCYASHDGNYTVSGFYKGGFGETVNPV---DIG 268

Query: 185 ELDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSYI 234
               E QD++   L++ GINE+L+ F+H+Y+ NK   ++V   +A+K ++
Sbjct: 269 GTSMEFQDNILLVLQQYGINERLSFFIHDYVHNKKINDYVESFEALKDFV 318

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
255572765	238	conserved hypothetical protein [Ricinus	0.983	0.978	0.603	5e-78
224057557	251	predicted protein [Populus trichocarpa]	0.822	0.776	0.686	2e-77
449509309	249	PREDICTED: uncharacterized protein At2g3	0.995	0.947	0.576	4e-77
225443095	239	PREDICTED: uncharacterized protein At2g3	0.978	0.970	0.578	4e-74
449436176	249	PREDICTED: uncharacterized protein At2g3	0.995	0.947	0.572	8e-73
18394294	242	Mitochondrial glycoprotein family protei	0.831	0.814	0.648	3e-72
297842791	242	hypothetical protein ARALYDRAFT_340150 [	0.991	0.971	0.573	3e-71
297844502	242	mitochondrial glycoprotein family protei	0.991	0.971	0.565	4e-69
21618310	240	unknown [Arabidopsis thaliana]	0.953	0.941	0.564	4e-68
357467833	237	Mitochondrial acidic protein MAM33 [Medi	0.814	0.814	0.628	9e-67

>gi|255572765|ref|XP_002527315.1| conserved hypothetical protein [Ricinus communis] gi|223533315|gb|EEF35067.1| conserved hypothetical protein [Ricinus communis]

 Score =  296 bits (758), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 146/242 (60%), Positives = 184/242 (76%), Gaps = 9/242 (3%)

Query: 1   MASLTRSLKRCQLLTKSMLL-----NSTKQNPSLFKSNLRNPVSQISKRNYISEMRKSAF 55
           MA L R++KR  + T   L+        +QNP    S L++P   +  RNYISEMRKSAF
Sbjct: 1   MARLIRTMKRTLISTPKTLIPQLHQQLLQQNPI---SELKDPFQFVLTRNYISEMRKSAF 57

Query: 56  EGNILRLLRNEIQYELERSSPKQPITKFNSFTVDDRPGEQWVRLTRKFGENEDIKIEATM 115
           + NILRLLRNEIQYEL+R+ PKQ +TKF SF +D+RPGEQW+ L  KF E+E+IK+EATM
Sbjct: 58  QDNILRLLRNEIQYELDRAPPKQLVTKFKSFAIDERPGEQWITLKTKFAESEEIKVEATM 117

Query: 116 FDGSIPVSKAGVGEDVKLHSTLIVNISKGDEEVLEMMCSAWPDSIEITKLFVRGNDKLSA 175
           FDG+IP        +V+LH TLIVNI KGD + LE+MCSAWP+SIEITKLF+RG+ K+  
Sbjct: 118 FDGAIP-GDVTKDNNVQLHITLIVNILKGDGDALEIMCSAWPNSIEITKLFIRGSVKMPD 176

Query: 176 DPYVGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSYIE 235
             YVGP+FKELDDELQ+SLYEFLE RGI++++ AFLHEY+KNK +TE++RW+  VKSYIE
Sbjct: 177 KAYVGPDFKELDDELQESLYEFLEARGIDDEMAAFLHEYMKNKGRTEYIRWIDTVKSYIE 236

Query: 236 NK 237
            K
Sbjct: 237 KK 238

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057557|ref|XP_002299266.1| predicted protein [Populus trichocarpa] gi|222846524|gb|EEE84071.1| predicted protein [Populus trichocarpa]

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 136/198 (68%), Positives = 169/198 (85%), Gaps = 3/198 (1%)

Query: 43  KRNYISEMRKSAFEGNILRLLRNEIQYELERSSPKQPITKFNSFTVDDRPGEQWVRLTRK 102
           +RNY+SE RKSAF+ N+LRL+RNEIQYEL+RS PKQP TK+ SFT++D PGEQW+RL RK
Sbjct: 54  RRNYMSETRKSAFKDNLLRLVRNEIQYELDRSPPKQPPTKYESFTIEDLPGEQWIRLKRK 113

Query: 103 FGENEDIKIEATMFDGSIPVSKA---GVGEDVKLHSTLIVNISKGDEEVLEMMCSAWPDS 159
           F ENE+IK+EATMFDG++P+ K+   G+ ED+ LH TLI+NI KGD +VLE++CSAWPDS
Sbjct: 114 FRENEEIKVEATMFDGAVPIPKSDVPGIKEDMLLHITLIINILKGDGDVLEILCSAWPDS 173

Query: 160 IEITKLFVRGNDKLSADPYVGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNKD 219
           IEITKLF+R ++K S   Y GPEFKELDDELQD+LYEFLE RGIN+++  FLHEY++NK 
Sbjct: 174 IEITKLFIRRSNKTSHQVYDGPEFKELDDELQDTLYEFLEARGINDEMAIFLHEYIRNKG 233

Query: 220 KTEFVRWMQAVKSYIENK 237
           KTEF+RWM  VKSYIE+K
Sbjct: 234 KTEFIRWMGTVKSYIESK 251

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449509309|ref|XP_004163551.1| PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Cucumis sativus]

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 144/250 (57%), Positives = 186/250 (74%), Gaps = 14/250 (5%)

Query: 1   MASLTRSLKRC---------QLLTKSMLLNSTKQNPSLFKSNLRNPVSQISKRNYISEMR 51
           MA L R L++C             KS+      QNP +F     + V   + R+YI++MR
Sbjct: 1   MARLIRPLRKCLQFSSSSSSFSSHKSLTTQLHLQNPIVFPPE-NHYVFCKTLRHYIADMR 59

Query: 52  KSAFEGNILRLLRNEIQYELERSSPKQPITKFNSFTVDDRPGEQWVRLTRKFGENEDIKI 111
           +SAFEGNILRLLRNEI+YEL+RS P QP+TKF +FTVD+RPGEQW+RL R++ E E IKI
Sbjct: 60  RSAFEGNILRLLRNEIRYELDRSPPSQPVTKFGAFTVDERPGEQWIRLEREYEEKEKIKI 119

Query: 112 EATMFDGSIPVSKAG---VGEDVKLHSTLIVNISKGD-EEVLEMMCSAWPDSIEITKLFV 167
           EATMFD SIP  K+G    G+DV LH T IV+I+KG   +VL++MCSAWPDSIEI +LF+
Sbjct: 120 EATMFDQSIPAPKSGGSSSGKDVLLHITTIVHITKGGGSDVLKIMCSAWPDSIEIDRLFL 179

Query: 168 RGNDKLSADPYVGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWM 227
           RG + + A PY GP+FKELDD+LQ+SLYE+LE RG+++QL  FLHEY+KNKDKTEF+RWM
Sbjct: 180 RGGEIMPAQPYAGPDFKELDDDLQNSLYEYLEARGVDDQLAVFLHEYMKNKDKTEFIRWM 239

Query: 228 QAVKSYIENK 237
           + +K++IE K
Sbjct: 240 ETIKAFIEMK 249

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443095|ref|XP_002274018.1| PREDICTED: uncharacterized protein At2g39795, mitochondrial [Vitis vinifera]

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 140/242 (57%), Positives = 187/242 (77%), Gaps = 10/242 (4%)

Query: 1   MASLTRSLKRCQLLTKSMLLNSTKQNPSLFKSNLRNPVSQISKRNYISEMRKSAFEGNIL 60
           MA + R L+R  L++ S   + T++NP+    +L++P+S  + R+YISEMRKSAFEGNIL
Sbjct: 3   MARIIRPLRRA-LISSSK--SVTQKNPNPL--HLQSPISIFTTRSYISEMRKSAFEGNIL 57

Query: 61  RLLRNEIQYELERSSPKQPITKFNSFTVDDRPGEQWVRLTRKFGENEDIKIEATMFDGSI 120
           RLLR+EI+YELE  +PK+ + +++SF V++RPGEQW+RL +KFGE E+IKIE TMFDGSI
Sbjct: 58  RLLRSEIEYELEHFTPKELVVEYDSFVVEERPGEQWIRLKKKFGEKEEIKIEVTMFDGSI 117

Query: 121 PVSKAG----VGEDVKLHSTLIVNISKGD-EEVLEMMCSAWPDSIEITKLFVRGNDKLSA 175
           PV K+     +G++V+LH TLIVNISKG+  +VLE +CSAWP S+EI  + V G D    
Sbjct: 118 PVEKSPDGIRIGQEVELHITLIVNISKGEGSDVLEFVCSAWPQSVEIVNVLVHGKDGRPN 177

Query: 176 DPYVGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSYIE 235
             Y+ P+FK+LDDELQ+SLYEFLE RGI++ L  F+HEY+KNKDKTEF+RWM  VKS+IE
Sbjct: 178 QLYMSPKFKDLDDELQESLYEFLETRGIDDDLAIFVHEYMKNKDKTEFIRWMGTVKSFIE 237

Query: 236 NK 237
            K
Sbjct: 238 QK 239

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436176|ref|XP_004135870.1| PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Cucumis sativus]

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 143/250 (57%), Positives = 186/250 (74%), Gaps = 14/250 (5%)

Query: 1   MASLTRSLKRC---------QLLTKSMLLNSTKQNPSLFKSNLRNPVSQISKRNYISEMR 51
           MA L R L++C             KS+      QNP +F     + V   + R+YI++MR
Sbjct: 1   MARLIRPLRKCLQFSSSSSSFSSHKSLTTQLHLQNPIVFPPE-NHYVFCKTLRHYIADMR 59

Query: 52  KSAFEGNILRLLRNEIQYELERSSPKQPITKFNSFTVDDRPGEQWVRLTRKFGENEDIKI 111
           +SAFEGNILRLLRNEI+YEL+RS P QP+TKF +FTVD+RPGEQW+RL R++ E E IKI
Sbjct: 60  RSAFEGNILRLLRNEIRYELDRSPPSQPVTKFGAFTVDERPGEQWIRLEREYEEREKIKI 119

Query: 112 EATMFDGSIPVSKAG---VGEDVKLHSTLIVNISKGD-EEVLEMMCSAWPDSIEITKLFV 167
           EATMFD SIP  K+G    G+DV LH T IV+I+KG   +VL+++CSAWPDSIEI +LF+
Sbjct: 120 EATMFDQSIPAPKSGGSSSGKDVLLHITTIVHITKGGGSDVLKIICSAWPDSIEIDRLFL 179

Query: 168 RGNDKLSADPYVGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWM 227
           RG + + A PY GP+FKELDD+LQ+SLYE+LE RG+++QL  FLHEY+KNKDKTEF+RWM
Sbjct: 180 RGGEIMPAQPYAGPDFKELDDDLQNSLYEYLEARGVDDQLAVFLHEYMKNKDKTEFIRWM 239

Query: 228 QAVKSYIENK 237
           + +K++IE K
Sbjct: 240 ETIKAFIEMK 249

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18394294|ref|NP_563984.1| Mitochondrial glycoprotein family protein [Arabidopsis thaliana] gi|8927665|gb|AAF82156.1|AC034256_20 Contains weak similarity to suAprgA1 from Emericella nidulans gb|Y17330. EST gb|AI997956 comes from this gene [Arabidopsis thaliana] gi|15215660|gb|AAK91375.1| At1g15870/F7H2_19 [Arabidopsis thaliana] gi|20334884|gb|AAM16198.1| At1g15870/F7H2_19 [Arabidopsis thaliana] gi|332191256|gb|AEE29377.1| Mitochondrial glycoprotein family protein [Arabidopsis thaliana]

 Score =  277 bits (709), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 129/199 (64%), Positives = 160/199 (80%), Gaps = 2/199 (1%)

Query: 41  ISKRNYISEMRKSAFEGNILRLLRNEIQYELERSSPKQPITKFNSFTVDDRPGEQWVRLT 100
           +S  +Y+SEMR++AFEGNILRL+R EIQ EL+ S   QP   F  FTVD+RPGEQW+ L 
Sbjct: 44  LSSGSYVSEMRRTAFEGNILRLIRLEIQSELDHSPILQPEESFGPFTVDERPGEQWISLR 103

Query: 101 RKFGENEDIKIEATMFDGSIPVSKAGVG--EDVKLHSTLIVNISKGDEEVLEMMCSAWPD 158
           RKFGE EDIKIEATMFDGS+P SK+     EDV+LH T IVNISKGD E LE+MCSAWPD
Sbjct: 104 RKFGEKEDIKIEATMFDGSVPSSKSTTSDPEDVQLHITFIVNISKGDGETLEIMCSAWPD 163

Query: 159 SIEITKLFVRGNDKLSADPYVGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNK 218
           +I+ITK FVR + + S + Y+GPEF+E++DELQDS+Y FLEERGI++ L  FLH+Y+KNK
Sbjct: 164 TIQITKFFVRKSSQNSPNAYIGPEFQEMEDELQDSVYRFLEERGISDDLAEFLHQYMKNK 223

Query: 219 DKTEFVRWMQAVKSYIENK 237
           DK E++RWM+ VKSY+E K
Sbjct: 224 DKAEYIRWMETVKSYVEQK 242

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842791|ref|XP_002889277.1| hypothetical protein ARALYDRAFT_340150 [Arabidopsis lyrata subsp. lyrata] gi|297335118|gb|EFH65536.1| hypothetical protein ARALYDRAFT_340150 [Arabidopsis lyrata subsp. lyrata]

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 140/244 (57%), Positives = 176/244 (72%), Gaps = 9/244 (3%)

Query: 1   MASLTRSLKRCQLLTKSMLLNSTKQNPSLFKSNLRNPVSQISKR-----NYISEMRKSAF 55
           MA   R L+R      S  +    ++P +   + +NP   IS+R     +Y+SEM+KSAF
Sbjct: 1   MARFVRCLRRTLFSNSSPSI--AYRSPRIGLPSNQNPKFLISRRCLSSGSYVSEMQKSAF 58

Query: 56  EGNILRLLRNEIQYELERSSPKQPITKFNSFTVDDRPGEQWVRLTRKFGENEDIKIEATM 115
           +GNILRL+RNEI+YEL+ S P QP   F  FTVD+RPGEQW+ L RKFG+ EDIKIEATM
Sbjct: 59  QGNILRLIRNEIEYELDHSPPLQPPDSFGPFTVDERPGEQWISLKRKFGDKEDIKIEATM 118

Query: 116 FDGSIPVSKAGVGE-DVKLHSTLIVNISKGD-EEVLEMMCSAWPDSIEITKLFVRGNDKL 173
           FD S+P SK+   E D  LH T IVNISKG   EVLE+MCSAWPD+IEI+KL +R     
Sbjct: 119 FDRSVPTSKSTKTEPDYILHITFIVNISKGGASEVLEIMCSAWPDTIEISKLCIRKGINT 178

Query: 174 SADPYVGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSY 233
           SA  Y GPEF+ELDD+LQD+LY+FLEERGI+++L  FLH Y+KNK K E+VRWM++VKSY
Sbjct: 179 SASSYGGPEFEELDDQLQDALYQFLEERGISDELAVFLHRYMKNKGKAEYVRWMESVKSY 238

Query: 234 IENK 237
           +E K
Sbjct: 239 VEQK 242

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844502|ref|XP_002890132.1| mitochondrial glycoprotein family protein [Arabidopsis lyrata subsp. lyrata] gi|297335974|gb|EFH66391.1| mitochondrial glycoprotein family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 138/244 (56%), Positives = 182/244 (74%), Gaps = 9/244 (3%)

Query: 1   MASLTRSLKRCQLLTKSMLLNSTKQNPSLFKSNLRNPVSQISKR-----NYISEMRKSAF 55
           MA L R L+R  +L+ S  +  + +NP +   + +NP   IS++     +Y+SEMRKSAF
Sbjct: 1   MARLLRCLRRSVILSSSPSI--SYRNPRICVQSNQNPSFLISRKFLSSGSYVSEMRKSAF 58

Query: 56  EGNILRLLRNEIQYELERSSPKQPITKFNSFTVDDRPGEQWVRLTRKFGENEDIKIEATM 115
           +GNILRL+R+EIQ EL+ S   +   +F  FTVD+RPGEQW+ L R FG+ EDIKIEATM
Sbjct: 59  QGNILRLIRSEIQSELDHSPILKLEDRFGPFTVDERPGEQWISLRRNFGDKEDIKIEATM 118

Query: 116 FDGSIPVSKAGVG--EDVKLHSTLIVNISKGDEEVLEMMCSAWPDSIEITKLFVRGNDKL 173
           FDGS+P SK+     +DV+LH T IVNISKGD   LE+MCSAWPD+I+I+K FVR + K 
Sbjct: 119 FDGSVPSSKSTSSDPQDVQLHITFIVNISKGDGGTLEIMCSAWPDTIQISKFFVRKSSKN 178

Query: 174 SADPYVGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSY 233
           S + Y GPEF+E++DELQDS+Y FLEERGI++ L  FLH+Y+KNKDK E++RWM+AVKSY
Sbjct: 179 SPNSYTGPEFQEMEDELQDSVYRFLEERGISDDLAEFLHQYMKNKDKAEYIRWMEAVKSY 238

Query: 234 IENK 237
           +E K
Sbjct: 239 VEQK 242

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21618310|gb|AAM67360.1| unknown [Arabidopsis thaliana]

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 135/239 (56%), Positives = 172/239 (71%), Gaps = 13/239 (5%)

Query: 10  RCQLLTKSMLLNST----KQNPSLFKSNLRNPVSQISKR-----NYISEMRKSAFEGNIL 60
           RC  L +++  NS+     ++P +      NP   IS+R     +Y+SEM+KSAF+GNIL
Sbjct: 4   RC--LRRTLFSNSSPSIAHRSPRIGLPTNLNPKILISRRCLSSGSYVSEMQKSAFQGNIL 61

Query: 61  RLLRNEIQYELERSSPKQPITKFNSFTVDDRPGEQWVRLTRKFGENEDIKIEATMFDGSI 120
           RL+RNEI+YEL+ S P QP   F  FTVD+RPGEQW+ L R FG+ EDIKIEATMFD S+
Sbjct: 62  RLIRNEIEYELDHSPPLQPPNSFGPFTVDERPGEQWISLKRNFGDKEDIKIEATMFDRSV 121

Query: 121 PVSKAGVGE-DVKLHSTLIVNISK-GDEEVLEMMCSAWPDSIEITKLFVRGNDKLSADPY 178
           P SK+   E +  LH T IVNISK G  E LE+MCSAWPD+IEI+KL +R     S   Y
Sbjct: 122 PTSKSTKTEPEYILHITFIVNISKAGATEALEIMCSAWPDTIEISKLCIRRGINTSPSSY 181

Query: 179 VGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSYIENK 237
            GPEF+ELDD+LQD+LY+FLEERGI+++L  FLH Y+KNK K E+VRWM++VKSY+E K
Sbjct: 182 GGPEFEELDDQLQDALYQFLEERGISDELAVFLHRYMKNKGKAEYVRWMESVKSYVEQK 240

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357467833|ref|XP_003604201.1| Mitochondrial acidic protein MAM33 [Medicago truncatula] gi|355505256|gb|AES86398.1| Mitochondrial acidic protein MAM33 [Medicago truncatula]

 Score =  259 bits (661), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 125/199 (62%), Positives = 153/199 (76%), Gaps = 6/199 (3%)

Query: 44  RNYISEMRKSAFEGNILRLLRNEIQYELERSSPKQP-ITKFNSFTVDDRPGEQWVRLTRK 102
           R YIS+M K AFEGNI RLLRNEIQYEL+ SS   P   KF SF VD RPGE+W+ L R+
Sbjct: 40  RTYISQMHKEAFEGNISRLLRNEIQYELQSSSSSNPPADKFGSFLVDGRPGERWITLKRQ 99

Query: 103 FGENEDIKIEATMFDGSIPVSKAGVG----EDVKLHSTLIVNISKGDEEVLEMMCSAWPD 158
           F  NE+IK+E TMFDG++P  K   G    ++V+LH TLIVNISK D +VLE+MCSAWPD
Sbjct: 100 FA-NENIKVEVTMFDGAVPAPKKSGGVANADEVQLHITLIVNISKEDGDVLEIMCSAWPD 158

Query: 159 SIEITKLFVRGNDKLSADPYVGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNK 218
           SI I +L VR N  ++A+PY GP+F+ELDDELQDSLY FLE RGIN++L  +LH+Y+K+K
Sbjct: 159 SIVIKRLLVRANKNMTAEPYAGPDFEELDDELQDSLYNFLEVRGINDELAKYLHQYMKHK 218

Query: 219 DKTEFVRWMQAVKSYIENK 237
           DKTE + WM+ VKSYIE K
Sbjct: 219 DKTEIIGWMEKVKSYIEKK 237

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
TAIR|locus:2036184	242	AT1G15870 "AT1G15870" [Arabido	0.991	0.971	0.573	3e-69
TAIR|locus:2025772	190	AT1G80720 "AT1G80720" [Arabido	0.793	0.989	0.636	3.8e-62
TAIR|locus:2116597	234	AT4G31930 "AT4G31930" [Arabido	0.805	0.816	0.476	1.4e-46
TAIR|locus:505006400	258	AT3G55605 "AT3G55605" [Arabido	0.962	0.883	0.298	9e-22
TAIR|locus:505006310	250	AT2G39795 [Arabidopsis thalian	0.843	0.8	0.313	3.5e-20
TAIR|locus:2185093	267	AT5G02050 [Arabidopsis thalian	0.620	0.550	0.363	7.2e-20
TAIR|locus:2153649	259	AT5G05990 "AT5G05990" [Arabido	0.417	0.382	0.376	2e-15
TAIR|locus:4010713924	227	AT4G32605 [Arabidopsis thalian	0.746	0.779	0.293	2e-15
TAIR|locus:2063969	240	AT2G39790 "AT2G39790" [Arabido	0.886	0.875	0.256	1.4e-14
ASPGD|ASPL0000037267	303	suAprgA1 [Emericella nidulans	0.240	0.188	0.421	1.8e-13

TAIR|locus:2036184 AT1G15870 "AT1G15870" [Arabidopsis thaliana (taxid:3702)]

 Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
 Identities = 140/244 (57%), Positives = 179/244 (73%)

Query:     1 MASLTRSLKRCQLLTKSMLLNSTKQNPSL-FKSN----LRNPVSQISKRNYISEMRKSAF 55
             MA L R L+R  + + S  +    +NP +  +SN      +    +S  +Y+SEMR++AF
Sbjct:     1 MARLLRCLRRSFIFSSSTSI--AYRNPRICVQSNQSYIFLSSRKFLSSGSYVSEMRRTAF 58

Query:    56 EGNILRLLRNEIQYELERSSPKQPITKFNSFTVDDRPGEQWVRLTRKFGENEDIKIEATM 115
             EGNILRL+R EIQ EL+ S   QP   F  FTVD+RPGEQW+ L RKFGE EDIKIEATM
Sbjct:    59 EGNILRLIRLEIQSELDHSPILQPEESFGPFTVDERPGEQWISLRRKFGEKEDIKIEATM 118

Query:   116 FDGSIPVSKAGVG--EDVKLHSTLIVNISKGDEEVLEMMCSAWPDSIEITKLFVRGNDKL 173
             FDGS+P SK+     EDV+LH T IVNISKGD E LE+MCSAWPD+I+ITK FVR + + 
Sbjct:   119 FDGSVPSSKSTTSDPEDVQLHITFIVNISKGDGETLEIMCSAWPDTIQITKFFVRKSSQN 178

Query:   174 SADPYVGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSY 233
             S + Y+GPEF+E++DELQDS+Y FLEERGI++ L  FLH+Y+KNKDK E++RWM+ VKSY
Sbjct:   179 SPNAYIGPEFQEMEDELQDSVYRFLEERGISDDLAEFLHQYMKNKDKAEYIRWMETVKSY 238

Query:   234 IENK 237
             +E K
Sbjct:   239 VEQK 242

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005759 "mitochondrial matrix" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2025772 AT1G80720 "AT1G80720" [Arabidopsis thaliana (taxid:3702)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 121/190 (63%), Positives = 148/190 (77%)

Query:    50 MRKSAFEGNILRLLRNEIQYELERSSPKQPITKFNSFTVDDRPGEQWVRLTRKFGENEDI 109
             M+KSAF+GNILRL+RNEI+YEL+ S P QP   F  FTVD+RPGEQW+ L R FG+ EDI
Sbjct:     1 MQKSAFQGNILRLIRNEIEYELDHSPPLQPPNSFGPFTVDERPGEQWISLKRNFGDKEDI 60

Query:   110 KIEATMFDGSIPVSKAGVGE-DVKLHSTLIVNISK-GDEEVLEMMCSAWPDSIEITKLFV 167
             KIEATMFD S+P SK+   E +  LH T IVNISK G  E LE+MCSAWPD+IEI+KL +
Sbjct:    61 KIEATMFDRSVPTSKSTKTEPEYILHITFIVNISKAGATEALEIMCSAWPDTIEISKLCI 120

Query:   168 RGNDKLSADPYVGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWM 227
             R     S   Y GPEF+ELDD+LQD+LY+FLEERGI+++L  FLH Y+KNK K E+VRWM
Sbjct:   121 RRGINTSPSSYGGPEFEELDDQLQDALYQFLEERGISDELAVFLHRYMKNKGKAEYVRWM 180

Query:   228 QAVKSYIENK 237
             ++VKSY+E K
Sbjct:   181 ESVKSYVEQK 190

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005759 "mitochondrial matrix" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2116597 AT4G31930 "AT4G31930" [Arabidopsis thaliana (taxid:3702)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 93/195 (47%), Positives = 136/195 (69%)

Query:    44 RNYISEMRKSAFEGNILRLLRNEIQYELERSSPKQPITKFNSFTVDDRPGEQWVRLTRKF 103
             R+  +   KS F  NILR++RNEI+Y+ + + P QP T+F SF+V+D PGEQ + +  KF
Sbjct:    38 RDVTTSPAKSPFRSNILRIIRNEIEYQSDYAPPHQPATEFKSFSVEDCPGEQCIVMKGKF 97

Query:   104 GENEDIKIEATMFDGSIPVSKAGV---GEDVKLHSTLIVNISKGD-EEVLEMMCSAWPDS 159
             GE+EDIK+EATMFDG + V +AG+   G DV+LH +L+V+ISK D  E +E +CS WP+ 
Sbjct:    98 GEDEDIKMEATMFDGFMNVPRAGLDASGHDVRLHISLLVDISKVDGSEEIEFLCSVWPNR 157

Query:   160 IEITKLFVRGNDKLSADPYVGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNKD 219
             IEI KL+    +K++  PY+GP F  L  + Q ++ EFL  RGI+ +L  FLHEY+ NKD
Sbjct:   158 IEIRKLYKLRRNKITGQPYMGPNFGNLKYDFQTAIREFLRVRGIDAELCFFLHEYMMNKD 217

Query:   220 KTEFVRWMQAVKSYI 234
             + E ++W++ + S+I
Sbjct:   218 RIELIQWLRKLNSFI 232

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005759 "mitochondrial matrix" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006400 AT3G55605 "AT3G55605" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 75/251 (29%), Positives = 133/251 (52%)

Query:     1 MASLTRSLKRCQLLTKSMLLNSTKQNPSLFKSNLRNPVSQISKRNYISEMRKSAFEGNIL 60
             +AS+   + R Q ++  +  +S    PSL    LR  VS+    +  +E  KS  +  ++
Sbjct:    14 LASVCGRVARAQAVSAIVNRSSLVPKPSL----LRPFVSRGFPYSTATEPLKS--DQTLI 67

Query:    61 RLLRNEIQYELE---RSSPKQPITKFN-SFTVDDRPGEQWVRLTRKFGENEDIKIEATM- 115
             +++ +EI+   E     + ++ I   +  F ++D PG + V LTR++   E IK+E +M 
Sbjct:    68 QVIDSEIKDSFEADDHDADEETIDSSDFPFKIEDNPGHRTVTLTREYN-GEQIKVEVSMP 126

Query:   116 ---FDGS---IPVSKAGVGEDVKLHST---LIVNISKGDEEVLEMMCSAWPDSIEITKLF 166
                 D +   +   + G G   K + +   L+V ++K     LE  C+A+PD I I  L 
Sbjct:   127 GLAMDENEDDVDDDEDGDGRHEKSNESSIPLVVTVTKKSGLSLEFSCTAFPDEIVIDGLS 186

Query:   167 VRGNDKLSADP--YVGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFV 224
             V   D  S +   Y GP+F+ELD+ ++ S ++FLE RGI    T FL+EY+  KD  E++
Sbjct:   187 VNRPDDSSEEQLTYDGPDFQELDENMRKSFHKFLETRGIKASATDFLYEYMMKKDSREYL 246

Query:   225 RWMQAVKSYIE 235
              W++ +K++++
Sbjct:   247 LWLKKLKTFVQ 257

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

TAIR|locus:505006310 AT2G39795 [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 67/214 (31%), Positives = 110/214 (51%)

Query:    35 RNPVSQ---ISKR-NYISEMRKSAFEGNILRLLRNEIQYELERSS--PKQPITKFN-SFT 87
             RNP S    +S+  NY + + + + E  ++R++ +EI   L+  +    + +T  +  F 
Sbjct:    37 RNPSSIRPFVSRALNYSTAIDRISSEQTLIRVIDSEINSALQSDNIDSDEEMTPGSFPFR 96

Query:    88 VDDRPGEQWVRLTRKFGENEDIKIEATM----FDGSIPVSKAGVGEDVKLHSTLIVNISK 143
             ++D+PG Q V LTR +   E IK+  +M     D +        G   +    L+V ++K
Sbjct:    97 IEDKPGNQNVTLTRDYN-GEHIKVVVSMPSLVSDENDDDDDDDEGPSNESSIPLVVTVTK 155

Query:   144 GDEEVLEMMCSAWPDSIEITKLFVRG-NDKLSAD-PYVGPEFKELDDELQDSLYEFLEER 201
                  LE  C A+PD I I  L V+   D L       GP+F++LD+ L+ + Y+FLE R
Sbjct:   156 KSGLTLEFSCMAFPDEIAIDALSVKHPGDSLEDQLANEGPDFEDLDENLKKTFYKFLEIR 215

Query:   202 GINEQLTAFLHEYLKNKDKTEFVRWMQAVKSYIE 235
             G+    T FLHEY+  K   E+  W++ VK ++E
Sbjct:   216 GVKASTTNFLHEYMTRKVNREYFLWLKNVKEFME 249

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005759 "mitochondrial matrix" evidence=IEA;ISS

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

TAIR|locus:2185093 AT5G02050 [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 60/165 (36%), Positives = 92/165 (55%)

Query:    86 FTVDDRPGEQWVRLTRKFGENEDIKIEA---TMFDGSIPVSKAGVG-----EDV----KL 133
             F + D  GE+ V LTRKF E+E I++E      +D      +A        ED     K+
Sbjct:   105 FEIIDNSGERTVLLTRKF-EDETIQVEVDSVASYDDEDEEEEAEPNNEEDDEDQESSGKV 163

Query:   134 HSTLIVNISKGDEEVLEMMCSAWPDSIEITKLFVR---GNDKLSADPYVGPEFKELDDEL 190
                ++V++ KGD   LE   SA+PD I I  L ++   G+D   A  Y GP+F +LD+ L
Sbjct:   164 RVPMVVSVQKGDGVCLEFGVSAYPDEIVIDSLSIKQPQGSDNDLA--YEGPDFDDLDENL 221

Query:   191 QDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSYIE 235
             Q + + +LE RGI    T FL +Y+ NKD  E+++W++ +KS++E
Sbjct:   222 QKAFHRYLEIRGIKPSFTTFLADYVANKDSREYLQWLKDLKSFVE 266

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005759 "mitochondrial matrix" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0001510 "RNA methylation" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

TAIR|locus:2153649 AT5G05990 "AT5G05990" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 38/101 (37%), Positives = 63/101 (62%)

Query:   137 LIVNISKGDEEVLEMMCSAWPDSIEITKLFVRGNDKLSADP--YVGPEFKELDDELQDSL 194
             L+V +SK     LE  C+A+PD I I  ++V   D  S D   Y GP F+ LD++L+ + 
Sbjct:   158 LLVTLSKKTGPSLEFRCTAFPDRIAIKDMWVTFPDDPSKDELAYEGPSFRVLDEKLRKAF 217

Query:   195 YEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSYIE 235
             + ++E RGI   +  FLHEY+ NKD  E + W++++K++++
Sbjct:   218 HRYIEIRGIKPSMINFLHEYMINKDSREHLLWLKSLKNFVK 258

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005759 "mitochondrial matrix" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4010713924 AT4G32605 [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 57/194 (29%), Positives = 101/194 (52%)

Query:    53 SAFEGNILRLLRNEIQYELERSSPKQPITKFNSFTV--DDRPGEQWVRLTRKFGENEDIK 110
             +A +  +LR L+ E   E+ + +P   ++  + F +      G     L +  G NE+I 
Sbjct:    34 AAVDSMLLRSLK-EHYLEVSKMTPPPKVSPPSPFEIVKGSLEGSTGAVLKKSVG-NEEIN 91

Query:   111 IEAT-MFDGSIPVSKAGVGEDVKLHSTLIVNISKGDE-EVLEMMCSAWPDSIEITKLFVR 168
             +    +  G       G+ + + LH    V +SK ++ + L  +C  +PD++ I  + +R
Sbjct:    92 LFVMRLAHGGDEEDDGGINQ-LFLH----VAVSKPNQPDSLHFLCGLYPDALGIHSVSMR 146

Query:   169 GNDK---LSADP--YVGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEF 223
                +   +S DP  Y GP F+ELD++++D  + FLEERG+NE L  FL  +L  KD    
Sbjct:   147 PKLEALEMSDDPTQYTGPSFEELDEKMRDVFHGFLEERGVNESLFPFLQAWLYVKDHRNL 206

Query:   224 VRWMQAVKSYI-EN 236
             +RW ++V +++ EN
Sbjct:   207 LRWFKSVGTFVHEN 220

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005759 "mitochondrial matrix" evidence=IEA

TAIR|locus:2063969 AT2G39790 "AT2G39790" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 57/222 (25%), Positives = 107/222 (48%)

Query:    20 LNSTKQNPSLFKSNLRNPVSQISKRNYISEMR--KSAFEGNILRLLRNEIQYELERSSPK 77
             +++    PSL  +   +P+S    R ++  M   K + E  +  ++ +E+   L+   P 
Sbjct:    24 ISAVVNRPSLALNP--SPLSPFVSRGFLYTMAVDKLSSEQTLHLVIDSELNSALQTDDPN 81

Query:    78 -QPITKFNSFT--VDDRPGEQWVRLTRKFGENEDIKIEATM-FDGSIPVSKAGVGEDVKL 133
                     SF   + D+PG+Q V LT  + + E I ++  M + G   +   G   D +L
Sbjct:    82 LNEEMAPGSFPLKIRDKPGDQSVTLTAYYND-ERIHVDVGMPYLGDDVIDVFGPNND-EL 139

Query:   134 HSTLIVNISKGDEEVLEMMCSAWPDSIEITKLFVRGNDKLSADPYVGPEFKELDDELQDS 193
                L+V + K +   +E  C A+ D I++T L V        +    P FK LDD L+ +
Sbjct:   140 SFPLVVTVIKKNGVSIEFTCQAYADYIDLTDLTVHDYQYQMGETD-WPRFKNLDDNLKKA 198

Query:   194 LYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSYIE 235
              + +L  R ++  +T  LH+Y+ +K K E++ W++ V  +++
Sbjct:   199 FHRYLATR-LDANITKLLHKYMVSKIKREYLLWLKNVNKFVD 239

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005759 "mitochondrial matrix" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000037267 suAprgA1 [Emericella nidulans (taxid:162425)]

 Score = 148 (57.2 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
 Identities = 24/57 (42%), Positives = 42/57 (73%)

Query:   178 YVGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSYI 234
             Y GP F+ LD++LQ  L  +LEERGIN +L   + +Y++ K++ E+VRW++ V++++
Sbjct:   245 YAGPPFENLDEDLQTYLERYLEERGINAELANMIPDYIQVKEQKEYVRWLENVRNFV 301

GO:0042318 "penicillin biosynthetic process" evidence=IGI;IMP

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0009060 "aerobic respiration" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_I0139 hypothetical protein (252 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	237
pfam02330	202	pfam02330, MAM33, Mitochondrial glycoprotein	2e-16

>gnl|CDD|216977 pfam02330, MAM33, Mitochondrial glycoprotein

 Score = 74.6 bits (183), Expect = 2e-16
 Identities = 57/203 (28%), Positives = 83/203 (40%), Gaps = 32/203 (15%)

Query: 63  LRNEIQYELERSSPKQPITKF---NSFTVDDRPGEQWVRLTRKFG--------------- 104
           L +EI+ E E+      + K     SF ++D PG+  V+LTRK G               
Sbjct: 1   LSSEIKEEKEQQLSLDNLNKSLPPMSFDIEDTPGDAEVKLTRKVGGEKIHVTFNVNQSVP 60

Query: 105 ----ENEDIKIEATMFDGSIPVSKAGV-GEDVKLHSTLIVNISKGDEEVLEMMCSAWPDS 159
                  D   E      S P     V   D      L++ ISK     +E    A  D 
Sbjct: 61  PPYDGEMDESQEQEPEQTSTPNFVVEVPNNDNGNFPPLVLEISKPGVS-IEFEDEAQSDI 119

Query: 160 IEITKLFVR-----GNDKLSA---DPYVGPEFKELDDELQDSLYEFLEERGINEQLTAFL 211
             + +++        N    A   D Y GP FK LD ELQD  + +LEERG++     FL
Sbjct: 120 FSVEEVYFYPSGDSLNQSAEAEWRDTYYGPSFKNLDPELQDLFHRYLEERGVDATFAKFL 179

Query: 212 HEYLKNKDKTEFVRWMQAVKSYI 234
             Y   K+  E++ W++ VK ++
Sbjct: 180 VAYSTAKEHQEYITWLEKVKKFV 202

This mitochondrial matrix protein family contains members of the MAM33 family which bind to the globular 'heads' of C1Q. It is thought to be involved in mitochondrial oxidative phosphorylation and in nucleus-mitochondrion interactions. Length = 202

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	237
KOG2536	263	consensus MAM33, mitochondrial matrix glycoprotein	100.0
PF02330	204	MAM33: Mitochondrial glycoprotein; InterPro: IPR00	100.0
KOG4024	266	consensus Complement component 1, Q subcomponent b	100.0

>KOG2536 consensus MAM33, mitochondrial matrix glycoprotein [Energy production and conversion]

Probab=100.00  E-value=6.4e-53  Score=368.06  Aligned_cols=192  Identities=44%  Similarity=0.730  Sum_probs=165.2

Q ss_pred             cccc-cccccCcchhHHHHHHHHHHHHHHhcCCCCC-----CCCCCCCcEEEecCCCcEEEEEeecCCCCeEEEEEEecC
Q 026512           44 RNYI-SEMRKSAFEGNILRLLRNEIQYELERSSPKQ-----PITKFNSFTVDDRPGEQWVRLTRKFGENEDIKIEATMFD  117 (237)
Q Consensus        44 r~~~-s~~~~~a~d~~L~~~L~~EI~~E~~~~~~~~-----~p~~~~~F~i~d~pG~~~v~L~R~~~~~E~I~V~~~~~d  117 (237)
                      ++|+ |.+++++.++.|++++++||+++++..++.+     .|..+.+|+|+|+||.++|+|+|+|+ ||+|+|.++|..
T Consensus        47 ~~~s~s~~~rss~t~~~~r~i~~EI~s~~~~~~~~~~~~~~~~~~~~pf~ied~PG~q~V~L~r~~~-GE~i~V~v~v~~  125 (263)
T KOG2536|consen   47 FPFSTAAIRRSSFTQNLLRVILSEIKSEKKHDPPHQVLEEEIPLSKFPFEIEDRPGEQWVVLTRKFE-GETIKVEVDVTQ  125 (263)
T ss_pred             CCcchhhhhhcccccchHHHHHHHHHHhhhcCCchhhhhhccccCCCCcceecCCCceEEEEEeecC-CceEEEEEeeeh
Confidence            3443 5688899999999999999999999877765     56677899999999999999999999 999999999853


Q ss_pred             C--CCCCCc-------CC---CC-----CCccceeeEEEEEEeCCCcEEEEEeEecCCeeEEEEEEEeCCCCCCC--CCc
Q 026512          118 G--SIPVSK-------AG---VG-----EDVKLHSTLIVNISKGDEEVLEMMCSAWPDSIEITKLFVRGNDKLSA--DPY  178 (237)
Q Consensus       118 ~--~~p~~~-------~~---~~-----~~~~~~~~f~V~ItK~~~~~L~f~C~~~~de~~I~~v~~~~~~~~~~--~~Y  178 (237)
                      .  ..++++       ++   ++     .+...+++|.|+|+|++|.+|+|.|+++||+|.|++++++.+.....  .+|
T Consensus       126 ~~~~~~~e~~de~e~~~~~~~~~~~~~~~~~~~~iplvV~vsK~~~~sLef~cta~pD~i~Idslsv~~~~d~~~~~l~Y  205 (263)
T KOG2536|consen  126 LVTDEPEEDEDETEEEDEDEDQEDDDPLSDNISNIPLVVTVSKGDGVSLEFLCTAFPDEIVIDSLSVRPPIDASEDQLAY  205 (263)
T ss_pred             hccCCcchhccccccccccccccccccCCCcceeeEEEEEEecCCCceEEEEeecCCCceEEeeeEecCCCCccchhhhc
Confidence            1  111111       00   01     24577899999999988999999999999999999999977654433  499


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhc
Q 026512          179 VGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSYIEN  236 (237)
Q Consensus       179 ~GP~F~~LDe~LQ~~~~~YLeeRGId~ela~fl~~y~~~KEq~EYi~WL~~vk~Fv~~  236 (237)
                      .||.|++|||+||++||.|||+|||+++|+.|||+||.+|+++||++||++||+||++
T Consensus       206 ~GP~F~eLDe~Lqd~fh~fLEeRGI~esl~~FL~~ym~~Kd~rEYl~WlksvK~Fv~~  263 (263)
T KOG2536|consen  206 EGPSFEELDEELQDSFHRFLEERGIKESLASFLHAYMKNKDSREYLRWLKSVKSFVEQ  263 (263)
T ss_pred             cCCChhHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999974

>PF02330 MAM33: Mitochondrial glycoprotein; InterPro: IPR003428 This mitochondrial matrix protein family contains members of the MAM33 family which bind to the globular 'heads' of C1Q

Probab=100.00  E-value=2.6e-43  Score=302.80  Aligned_cols=170  Identities=35%  Similarity=0.632  Sum_probs=134.3

Q ss_pred             HHHHHHHHHhcCCCC-C--CCCCCCCcEEEecCCCcEEEEEeecCCCCeEEEEEEecCCC---CCCC----c--CCC---
Q 026512           63 LRNEIQYELERSSPK-Q--PITKFNSFTVDDRPGEQWVRLTRKFGENEDIKIEATMFDGS---IPVS----K--AGV---  127 (237)
Q Consensus        63 L~~EI~~E~~~~~~~-~--~p~~~~~F~i~d~pG~~~v~L~R~~~~~E~I~V~~~~~d~~---~p~~----~--~~~---  127 (237)
                      |++||++|++..... .  ......+|+|.+.||+++|+|+|+|+ ||+|+|.|++++..   .+++    .  ++.   
T Consensus         1 L~~EI~~E~~~~~~~~~~~~~l~~~~f~i~d~~g~~~V~L~r~~~-~E~I~V~f~v~~~~~~~~~~~~~~~~~~e~~~~~   79 (204)
T PF02330_consen    1 LKSEIKYEKENYESPDSLKEFLPPSPFEIEDKPGGSEVTLTREFG-GEKIRVTFNVNDSVDPPFDEDEDEEEGEEEEEEE   79 (204)
T ss_dssp             HHHHHHHHHHHCT-HHHHCCHHHHTTTCEEEECCTTEEEEEEEET-TEEEEEEEECCCH---------------------
T ss_pred             ChHHHHHHHHcccccHHHHhhCCCCCCEEEEcCCCcEEEEEEecC-CcEEEEEEECCccCCCCCCccccchhcccccccc
Confidence            789999999987621 1  11123689999999999999999999 99999999997532   1110    0  000   


Q ss_pred             ---C-------C-CccceeeEEEEEEeCCCcEEEEEeEecCCeeEEEEEEEeCCCCC--------CCCCcCCCCCCCCCH
Q 026512          128 ---G-------E-DVKLHSTLIVNISKGDEEVLEMMCSAWPDSIEITKLFVRGNDKL--------SADPYVGPEFKELDD  188 (237)
Q Consensus       128 ---~-------~-~~~~~~~f~V~ItK~~~~~L~f~C~~~~de~~I~~v~~~~~~~~--------~~~~Y~GP~F~~LDe  188 (237)
                         +       . +....+.++|+|+|+++ .|.|.|++++|+|.|++|++......        ....|.||.|++||+
T Consensus        80 ~~~~~fe~~~~~~~~~~~~~~~v~~~k~~~-~l~f~~~~~~d~~~I~~v~~~~~~~~~~~~~~~e~~~~y~gp~f~~LDe  158 (204)
T PF02330_consen   80 ISEPDFEVEIPKEDEVSFPFFVVVISKPGD-GLEFDCSAQDDEFSIDNVSFYPDGDSTKDSAEAEWEDAYYGPDFDELDE  158 (204)
T ss_dssp             -----CEEECCCCCCCEEEEEEEEEECTCE-EEEEEEECCTTEEEEEEEEEESSHHHH--SHHHHHHCSS-ECEGGGSBH
T ss_pred             cccccchhcccccccccceeEEEEEEcCCC-ceEEeEeccCceEEEEEEEEecCccccccccchhccccccCCccccCCH
Confidence               0       0 11234579999999984 59999999999999999998654221        135899999999999


Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 026512          189 ELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSYI  234 (237)
Q Consensus       189 ~LQ~~~~~YLeeRGId~ela~fl~~y~~~KEq~EYi~WL~~vk~Fv  234 (237)
                      +||++|++||++||||++||+||++||++|||+||++||++|++||
T Consensus       159 ~Lq~~~~~yLeeRGId~~la~fl~~y~~~kEq~eYi~wL~~l~~Fv  204 (204)
T PF02330_consen  159 NLQDAFMNYLEERGIDEELANFLHDYSTDKEQREYIRWLKNLKKFV  204 (204)
T ss_dssp             HHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999997

; GO: 0005759 mitochondrial matrix; PDB: 3QV0_A 1YQF_F 3JV1_A 1P32_A 3RPX_A.

>KOG4024 consensus Complement component 1, Q subcomponent binding protein/mRNA splicing factor SF2, subunit P32 [Defense mechanisms]

Probab=100.00  E-value=1.9e-32  Score=233.46  Aligned_cols=178  Identities=22%  Similarity=0.338  Sum_probs=147.6

Q ss_pred             chhHHHHHHHHHHHHHHhcCCCCCCCCCCCCcEEEecCCCcEEEEEeecCCCCeEEEEEEecCCCCCCCcCC-C------
Q 026512           55 FEGNILRLLRNEIQYELERSSPKQPITKFNSFTVDDRPGEQWVRLTRKFGENEDIKIEATMFDGSIPVSKAG-V------  127 (237)
Q Consensus        55 ~d~~L~~~L~~EI~~E~~~~~~~~~p~~~~~F~i~d~pG~~~v~L~R~~~~~E~I~V~~~~~d~~~p~~~~~-~------  127 (237)
                      .+++|+++|..||+.|.+++..+..|+.+.||.+.-+  +.+|.|+|+.+ +|+|.|+||+|++..++++-+ +      
T Consensus        69 ~~~alv~fl~~Ei~~erk~qkgkt~Pkt~~Gf~v~l~--gaev~Ltkk~~-~Eki~V~FNvNhsvd~~e~~e~ePsq~~~  145 (266)
T KOG4024|consen   69 LQQALVRFLEAEIQLERKNQKGKTAPKTFAGFQVTLK--GAEVRLTKKNG-SEKILVVFNVNHSVDMDEGFEDEPSQAVA  145 (266)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCccCccccceEEEec--CceeEEeeccC-CceEEEEEecCCccCcccCCccCccccCC
Confidence            4799999999999999999988889999999999997  58999999999 999999999998755443211 1      


Q ss_pred             -CCCccceeeEEEEEEeCCCcEEEEEeEecCCe-------eEEE--EEEEeCCCC---CCCCCcCCCCCCCCCHHHHHHH
Q 026512          128 -GEDVKLHSTLIVNISKGDEEVLEMMCSAWPDS-------IEIT--KLFVRGNDK---LSADPYVGPEFKELDDELQDSL  194 (237)
Q Consensus       128 -~~~~~~~~~f~V~ItK~~~~~L~f~C~~~~de-------~~I~--~v~~~~~~~---~~~~~Y~GP~F~~LDe~LQ~~~  194 (237)
                       ..++.+.++|+|.|.||+ ++|+|+|++.+++       +.|.  .+......+   ..+..|.- .-+.||..|+|.|
T Consensus       146 ~~pe~tS~P~F~VeiiKG~-~~L~f~c~~~~~e~QedEy~~~~~~~~~a~f~~~gn~~~~d~vYa~-~gd~lD~~LyDlL  223 (266)
T KOG4024|consen  146 PVPEATSMPPFTVEIIKGD-QRLCFHCELVPVEDQEDEYDFRVEEFYVAPFAKNGNEDVPDEVYAS-SGDYLDPDLYDLL  223 (266)
T ss_pred             CCcccccCCCeEEEEEeCC-eeEEEEeecCCcccCcccccceeeeEEeeecccCCCccCCcceeec-cCcccCHHHHHHH
Confidence             224567899999999987 7999999986643       3333  333222222   23567864 4589999999999


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhcC
Q 026512          195 YEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSYIENK  237 (237)
Q Consensus       195 ~~YLeeRGId~ela~fl~~y~~~KEq~EYi~WL~~vk~Fv~~k  237 (237)
                      ++||++||||.+||.-|.+|++..||.+||.+|+++|+||++.
T Consensus       224 ~~~LeerG~d~~Fa~~Lv~laTa~EH~~YIglLeklkkF~~~q  266 (266)
T KOG4024|consen  224 FVYLEERGLDARFAKTLVALATAYEHSQYIGLLEKLKKFISKQ  266 (266)
T ss_pred             HHHHHHcCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	237
3qv0_A	227	Crystal Structure Of Saccharomyces Cerevisiae Mam33		2e-09
3jv1_A	182	Crystal Structure Of The Trypanosoma Brucei P22 Pro		8e-06

>pdb|3QV0|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Mam33 Length = 227

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 39/57 (68%)
Query: 178 YVGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSYI 234
           Y GP F  LD+ELQ+SL  +LE RG+NE+L +F+  Y + K+  E++ W++ +K + 
Sbjct: 170 YHGPPFSNLDEELQESLEAYLESRGVNEELASFISAYSEFKENNEYISWLEKMKKFF 226

>pdb|3JV1|A Chain A, Crystal Structure Of The Trypanosoma Brucei P22 Protein Length = 182

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 81/181 (44%), Gaps = 25/181 (13%)
Query: 66  EIQYELERSS-PKQPITKFNSFTVDDRPGEQWVRLTRKFGENEDIKIEATMFDGSIPVSK 124
           E++ E +R+  P++P      +T+D +PG     + +  G +E+I ++ T  D S     
Sbjct: 14  ELEDERQRAGLPEKPEIP-EGWTIDRKPGVTHFTMRKSHG-DEEIILQLTGEDRSNE--- 68
Query: 125 AGVGEDVKLHSTLIVNISKGDEEVLEMMCSAWPDSIEITKLFVRGNDKLSADP------- 177
               E  +    L+VN  K     L    S       I  +  R + KL+ D        
Sbjct: 69  ----EITRTLDVLVVNGGK----ALVFGMSVEDGEFVINNVCFRHDGKLALDTSAEAQFQ 120
Query: 178 ----YVGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSY 233
               Y+GP+  +L+D L DS   +L  RG+N+ L  F+ ++    ++ ++  W+ ++  +
Sbjct: 121 KSQLYMGPDLADLEDHLVDSFTSYLSARGVNDTLANFIDQFSLWSEQADYEEWLSSINKF 180
Query: 234 I 234
           +
Sbjct: 181 V 181

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	237
1yqf_A	203	Hypothetical protein LMAJ011689; structural genomi	2e-48
3jv1_A	182	P22 protein; MAM33 family, hydrolase; 2.00A {Trypa	8e-46
3qv0_A	227	Mitochondrial acidic protein MAM33; A BOWL like st	5e-38
1p32_A	209	Mitochondrial matrix protein, SF2P32; 2.25A {Homo	2e-32

>1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.30A {Leishmania major} SCOP: d.25.1.1 Length = 203

 Score =  157 bits (398), Expect = 2e-48
 Identities = 40/211 (18%), Positives = 85/211 (40%), Gaps = 22/211 (10%)

Query: 35  RNPVSQISKRNYISEMRKSAFEGNILRLLRNEIQYELERSSPKQPITKFNSFTVDDRPGE 94
            +    +S    ++  R+SA +  +    R E++ E+ RS   +  T    + V  +PG 
Sbjct: 3   HHHHHHMSAPTALTVPRRSASDAALADATRRELEEEMGRSDKPEQPTPPAGWQVVRKPGT 62

Query: 95  QWVRLTRKFGENEDIKIEATMFDGSIPVSKAGVGEDVKLHSTLIVNISKGDEEVLEMMCS 154
               LT+ F   ED+ +  +    S   +             + V I++ + + ++   S
Sbjct: 63  CTFDLTKSFE-GEDLVVRYSTNQDSDKANSH----------NIFVYITQKNGQTMQADLS 111

Query: 155 AWPDSIEITKLFVRGNDKLSAD-----------PYVGPEFKELDDELQDSLYEFLEERGI 203
                + +  +       L+ D            Y GP   ELD +L + +  +LE+RG+
Sbjct: 112 IEEGELVLNNIRFYDEAALAKDTGAEAEAKRNELYTGPLVHELDYDLLNCVMTYLEKRGV 171

Query: 204 NEQLTAFLHEYLKNKDKTEFVRWMQAVKSYI 234
           +E+L  F+  Y    ++ ++  W+  +  + 
Sbjct: 172 DEKLGEFVVLYSFWAEQQDYEAWLTTMNKFA 202

>3jv1_A P22 protein; MAM33 family, hydrolase; 2.00A {Trypanosoma brucei} Length = 182

 Score =  150 bits (379), Expect = 8e-46
 Identities = 38/193 (19%), Positives = 82/193 (42%), Gaps = 23/193 (11%)

Query: 53  SAFEGNILRLLRNEIQYELERSSPKQPITKFNSFTVDDRPGEQWVRLTRKFGENEDIKIE 112
           +  +  +      E++ E +R+   +       +T+D +PG     + +  G +E+I ++
Sbjct: 1   AVSDQRLSEATLRELEDERQRAGLPEKPEIPEGWTIDRKPGVTHFTMRKSHG-DEEIILQ 59

Query: 113 ATMFDGSIPVSKAGVGEDVKLHSTLIVNISKGDEEVLEMMCSAWPDSIEITKLFVRGNDK 172
            T  D            + ++  TL V +  G +  L    S       I  +  R + K
Sbjct: 60  LTGEDR----------SNEEITRTLDVLVVNGGK-ALVFGMSVEDGEFVINNVCFRHDGK 108

Query: 173 LSAD-----------PYVGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKT 221
           L+ D            Y+GP+  +L+D L DS   +L  RG+N+ L  F+ ++    ++ 
Sbjct: 109 LALDTSAEAQFQKSQLYMGPDLADLEDHLVDSFTSYLSARGVNDTLANFIDQFSLWSEQA 168

Query: 222 EFVRWMQAVKSYI 234
           ++  W+ ++  ++
Sbjct: 169 DYEEWLSSINKFV 181

>3qv0_A Mitochondrial acidic protein MAM33; A BOWL like structure, mitochondrial oxidative phosphorylati protein binding; 2.10A {Saccharomyces cerevisiae} Length = 227

 Score =  131 bits (330), Expect = 5e-38
 Identities = 37/216 (17%), Positives = 83/216 (38%), Gaps = 37/216 (17%)

Query: 56  EGNILRLLRNEIQYELERSSPKQPITKF------NSFTVDDRPGEQWVRLTRKFGENEDI 109
              +  +L++E++ E E       +  F        F++ + PG+    + R+    E +
Sbjct: 11  TQRVGDILQSELKIEKETLPESTSLDSFNDFLNKYKFSLVETPGKNEAEIVRRTESGETV 70

Query: 110 KIEATMFDGSIPVSKAGVGED------------------VKLHSTLIVNISKGDEEVLEM 151
            +   +   +       + E+                     +  ++++     E  +  
Sbjct: 71  HVFFDVAQIANLPYNNAMDENTEQNEDGINEDDFDALSDNFANVNVVISKESASEPAVSF 130

Query: 152 --MCSAWPDSIEITKLFVRGNDKLSAD-----------PYVGPEFKELDDELQDSLYEFL 198
             + +    S  +       +   + +            Y GP F  LD+ELQ+SL  +L
Sbjct: 131 ELLMNLQEGSFYVDSATPYPSVDAALNQSAEAEITRELVYHGPPFSNLDEELQESLEAYL 190

Query: 199 EERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSYI 234
           E RG+NE+L +F+  Y + K+  E++ W++ +K + 
Sbjct: 191 ESRGVNEELASFISAYSEFKENNEYISWLEKMKKFF 226

>1p32_A Mitochondrial matrix protein, SF2P32; 2.25A {Homo sapiens} SCOP: d.25.1.1 PDB: 3rpx_A Length = 209

 Score =  116 bits (291), Expect = 2e-32
 Identities = 35/211 (16%), Positives = 74/211 (35%), Gaps = 28/211 (13%)

Query: 52  KSAFEGNILRLLRNEIQYELERSSPKQPITKFNSFTVDDRPGEQWVRLTRKFGENEDIKI 111
            +  +   +  L +EI+ E +    K        + ++    E   +L RK    E I +
Sbjct: 2   HTDGDKAFVDFLSDEIKEERKIQKHKTLPKMSGGWELELNGTE--AKLVRKVA-GEKITV 58

Query: 112 EATMFDGSIPV-----------SKAGVGEDVKLHSTLIVNISKGDE--EVLEMMCSA--- 155
              + +   P                   ++      +V + K D+  + L + C     
Sbjct: 59  TFNINNSIPPTFDGEEEPSQGQKVEEQEPELTSTPNFVVEVIKNDDGKKALVLDCHYPED 118

Query: 156 --------WPDSIEITKL-FVRGNDKLSADPYVGPEFKELDDELQDSLYEFLEERGINEQ 206
                     D   I ++ F    +    D         LD  L D L +FL +RG++  
Sbjct: 119 EVGQEDEAESDIFSIREVSFQSTGESEWKDTNYTLNTDSLDWALYDHLMDFLADRGVDNT 178

Query: 207 LTAFLHEYLKNKDKTEFVRWMQAVKSYIENK 237
               L E     +  E++ +++ +KS+++++
Sbjct: 179 FADELVELSTALEHQEYITFLEDLKSFVKSQ 209

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	237
1yqf_A	203	Hypothetical protein LMAJ011689; structural genomi	100.0
3jv1_A	182	P22 protein; MAM33 family, hydrolase; 2.00A {Trypa	100.0
1p32_A	209	Mitochondrial matrix protein, SF2P32; 2.25A {Homo	100.0
3qv0_A	227	Mitochondrial acidic protein MAM33; A BOWL like st	100.0

>1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.30A {Leishmania major} SCOP: d.25.1.1

Probab=100.00  E-value=1.2e-52  Score=359.90  Aligned_cols=184  Identities=21%  Similarity=0.368  Sum_probs=151.1

Q ss_pred             ccCcccccccccCcchhHHHHHHHHHHHHHHhcCCCCCCCCCCCCcEEEecCCCcEEEEEeecCCCCeEEEEEEecCCCC
Q 026512           41 ISKRNYISEMRKSAFEGNILRLLRNEIQYELERSSPKQPITKFNSFTVDDRPGEQWVRLTRKFGENEDIKIEATMFDGSI  120 (237)
Q Consensus        41 ~~~r~~~s~~~~~a~d~~L~~~L~~EI~~E~~~~~~~~~p~~~~~F~i~d~pG~~~v~L~R~~~~~E~I~V~~~~~d~~~  120 (237)
                      ++-|++.+.+||++++.+|+++|++||++|+++...+..|..+.||+|.|+||+++|+|+|+|| +|+|+|+|+|++...
T Consensus         9 ~~~~~~~~~~~~~~~d~~L~~~L~~EI~~E~~~~~~~~~~~~p~~F~i~d~pG~~~v~L~R~~~-~E~I~V~f~~~~~~~   87 (203)
T 1yqf_A            9 MSAPTALTVPRRSASDAALADATRRELEEEMGRSDKPEQPTPPAGWQVVRKPGTCTFDLTKSFE-GEDLVVRYSTNQDSD   87 (203)
T ss_dssp             -------------CHHHHHHHHHHHHHHHHHTCSSCCCCCCCCTTCEEEECTTSSEEEEEEEET-TEEEEEEEESCCCSS
T ss_pred             cccccceeccccCcchHHHHHHHHHHHHHHHhcccCCCCCCCCCCcEEEecCCCcEEEEEEecC-CeEEEEEEEcCCCCC
Confidence            4567788889999999999999999999999977432333334599999999999999999999 999999999987542


Q ss_pred             CCCcCCCCCCccceeeEEEEEEeCCCcEEEEEeEecCCeeEEEEEEEeCCC-----------CCCCCCcCCCCCCCCCHH
Q 026512          121 PVSKAGVGEDVKLHSTLIVNISKGDEEVLEMMCSAWPDSIEITKLFVRGND-----------KLSADPYVGPEFKELDDE  189 (237)
Q Consensus       121 p~~~~~~~~~~~~~~~f~V~ItK~~~~~L~f~C~~~~de~~I~~v~~~~~~-----------~~~~~~Y~GP~F~~LDe~  189 (237)
                      +       +++  . +|+|+|+|++|++|+|+|++++|+|.|++|+++.+.           +.+...|.||+|++||++
T Consensus        88 ~-------de~--s-~~~V~I~K~~~~~L~f~C~~~~~~~~I~~v~~~~~~~~~~~~~~e~~~~~~~~Y~GP~F~~LDe~  157 (203)
T 1yqf_A           88 K-------ANS--H-NIFVYITQKNGQTMQADLSIEEGELVLNNIRFYDEAALAKDTGAEAEAKRNELYTGPLVHELDYD  157 (203)
T ss_dssp             C-------SSC--E-EEEEEEECTTSCEEEEEEEEETTEEEEEEEEEESSHHHHHCCSHHHHHHHHHSCCCCCGGGSBHH
T ss_pred             C-------CCc--c-eEEEEEEeCCCCEEEEEEEecCCEEEEEEEEEeccccccccccccccccccccccCCCcccCCHH
Confidence            2       122  2 999999999889999999999999999999987542           123468999999999999


Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 026512          190 LQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSYIE  235 (237)
Q Consensus       190 LQ~~~~~YLeeRGId~ela~fl~~y~~~KEq~EYi~WL~~vk~Fv~  235 (237)
                      ||++|++||++||||++||+||++||++|||+||++||++|++||+
T Consensus       158 Lq~~l~~YLeeRGI~~~la~fl~~y~~~KE~~EYi~WL~~lk~Fv~  203 (203)
T 1yqf_A          158 LLNCVMTYLEKRGVDEKLGEFVVLYSFWAEQQDYEAWLTTMNKFAS  203 (203)
T ss_dssp             HHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999995

>3jv1_A P22 protein; MAM33 family, hydrolase; 2.00A {Trypanosoma brucei} SCOP: d.25.1.0

Probab=100.00  E-value=3.3e-52  Score=351.77  Aligned_cols=170  Identities=20%  Similarity=0.403  Sum_probs=153.1

Q ss_pred             cchhHHHHHHHHHHHHHHhcCCCCCCCCCCCCcEEEecCCCcEEEEEeecCCCCeEEEEEEecCCCCCCCcCCCCCCccc
Q 026512           54 AFEGNILRLLRNEIQYELERSSPKQPITKFNSFTVDDRPGEQWVRLTRKFGENEDIKIEATMFDGSIPVSKAGVGEDVKL  133 (237)
Q Consensus        54 a~d~~L~~~L~~EI~~E~~~~~~~~~p~~~~~F~i~d~pG~~~v~L~R~~~~~E~I~V~~~~~d~~~p~~~~~~~~~~~~  133 (237)
                      ++|++|+++|++||++|+++...+..|..+.||+|.|+||+++|+|+|+|+ +|+|+|+|+|++.     +     +...
T Consensus         2 ~~d~~L~~~L~~EI~~E~~~~~~~~~p~~~~~f~i~d~pG~~~v~L~r~~~-~E~I~V~f~~~~e-----d-----d~~~   70 (182)
T 3jv1_A            2 VSDQRLSEATLRELEDERQRAGLPEKPEIPEGWTIDRKPGVTHFTMRKSHG-DEEIILQLTGEDR-----S-----NEEI   70 (182)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSTTCCCCCCCCTTCEEECCTTCCSCEEEEEET-TEEEEEEEEEECS-----S-----CSSC
T ss_pred             cchHHHHHHHHHHHHHHHhcccccCCCCCCCCCEEEecCCCcEEEEEEEeC-CcEEEEEEecCCc-----c-----cccc
Confidence            578999999999999999987655566667899999999999999999999 9999999999872     1     1245


Q ss_pred             eeeEEEEEEeCCCcEEEEEeEecCCeeEEEEEEEeCCC-----------CCCCCCcCCCCCCCCCHHHHHHHHHHHHHcC
Q 026512          134 HSTLIVNISKGDEEVLEMMCSAWPDSIEITKLFVRGND-----------KLSADPYVGPEFKELDDELQDSLYEFLEERG  202 (237)
Q Consensus       134 ~~~f~V~ItK~~~~~L~f~C~~~~de~~I~~v~~~~~~-----------~~~~~~Y~GP~F~~LDe~LQ~~~~~YLeeRG  202 (237)
                      +++|+|+|+| +|++|+|+|++++|+|.|++|+++++.           +.+...|.||+|++||++||++|++||++||
T Consensus        71 ~~~~~V~I~K-~~~~L~f~c~~~~~~~~I~~v~~~~~~~~a~~~~~e~~~~~~~~Y~GP~f~~LDe~Lq~~l~~yLeeRG  149 (182)
T 3jv1_A           71 TRTLDVLVVN-GGKALVFGMSVEDGEFVINNVCFRHDGKLALDTSAEAQFQKSQLYMGPDLADLEDHLVDSFTSYLSARG  149 (182)
T ss_dssp             CEEEEEEEEE-TTEEEEEEEEEETTEEEEEEEEEESCHHHHHCCSHHHHHHHTTSCCCCCGGGSCHHHHHHHHHHHHTTT
T ss_pred             CccEEEEEEE-CCcEEEEEEEecCCEEEEEEEEEeccchhhccccccccccccccccCCCccccCHHHHHHHHHHHHHhC
Confidence            7999999999 578999999999999999999987642           2235789999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 026512          203 INEQLTAFLHEYLKNKDKTEFVRWMQAVKSYIE  235 (237)
Q Consensus       203 Id~ela~fl~~y~~~KEq~EYi~WL~~vk~Fv~  235 (237)
                      ||++||+||++||++|||+||++||++||+||+
T Consensus       150 I~~~la~fl~~y~~~KEq~EYi~WL~~lk~Fvs  182 (182)
T 3jv1_A          150 VNDTLANFIDQFSLWSEQADYEEWLSSINKFVS  182 (182)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            999999999999999999999999999999985

>1p32_A Mitochondrial matrix protein, SF2P32; 2.25A {Homo sapiens} SCOP: d.25.1.1 PDB: 3rpx_A

Probab=100.00  E-value=1.9e-48  Score=335.18  Aligned_cols=181  Identities=18%  Similarity=0.318  Sum_probs=152.8

Q ss_pred             CcchhHHHHHHHHHHHHHHhcCCCCCCCCCCCCcEEEecCCCcEEEEEeecCCCCeEEEEEEecCCCCCCC---cC-C--
Q 026512           53 SAFEGNILRLLRNEIQYELERSSPKQPITKFNSFTVDDRPGEQWVRLTRKFGENEDIKIEATMFDGSIPVS---KA-G--  126 (237)
Q Consensus        53 ~a~d~~L~~~L~~EI~~E~~~~~~~~~p~~~~~F~i~d~pG~~~v~L~R~~~~~E~I~V~~~~~d~~~p~~---~~-~--  126 (237)
                      +.++.+|+++|++||++|++...+..+|..++||+|.+. | ++|+|+|+|+ +|+|+|+|+|++...+..   ++ +  
T Consensus         3 ~~~d~~L~~~L~~EI~~E~~~~~~~~~p~~~~~F~v~~~-g-~~v~L~r~~~-~E~I~V~f~v~~~~~~~~~~~~e~~~~   79 (209)
T 1p32_A            3 TDGDKAFVDFLSDEIKEERKIQKHKTLPKMSGGWELELN-G-TEAKLVRKVA-GEKITVTFNINNSIPPTFDGEEEPSQG   79 (209)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHSTTSCCCCCTTCCEEEEE-T-TEEEEEEEET-TEEEEEEEECTTCCC------------
T ss_pred             chHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcEEEEC-C-CEEEEEEecC-CcEEEEEEEccCCCCcccccccccccc
Confidence            457899999999999999998876677777889999994 6 8999999999 999999999986422211   11 0  


Q ss_pred             -----CCCCccceeeEEEEEEeC--CCcEEEEEeEecCCe-----------eEEEEEEEeCC--CCCCCCCcCCCCCCCC
Q 026512          127 -----VGEDVKLHSTLIVNISKG--DEEVLEMMCSAWPDS-----------IEITKLFVRGN--DKLSADPYVGPEFKEL  186 (237)
Q Consensus       127 -----~~~~~~~~~~f~V~ItK~--~~~~L~f~C~~~~de-----------~~I~~v~~~~~--~~~~~~~Y~GP~F~~L  186 (237)
                           ++.++.++++|+|+|+|+  ++++|.|.|++++++           |.|++|+++..  +...+..|.| .|++|
T Consensus        80 ~~~~ee~~~~~~~~~~~V~I~K~~~~~~~L~f~C~~~~~e~~~~~~~~~~~~~I~~v~~~~~~e~~~~~~~Y~g-~f~~L  158 (209)
T 1p32_A           80 QKVEEQEPELTSTPNFVVEVIKNDDGKKALVLDCHYPEDEVGQEDEAESDIFSIREVSFQSTGESEWKDTNYTL-NTDSL  158 (209)
T ss_dssp             ---------CCCCCCEEEEEEEGGGTTEEEEEEEECCCCC------TTCCSCEEEEEEEEETTCSSCCTTSCEE-ESTTC
T ss_pred             cccccccccccccCcEEEEEEECCCCCCeEEEEEEecCcccccccccCCceEEEEEEEEecCcccccccccccc-ccccC
Confidence                 122446778999999998  678999999998877           99999998643  2234578999 89999


Q ss_pred             CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhcC
Q 026512          187 DDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSYIENK  237 (237)
Q Consensus       187 De~LQ~~~~~YLeeRGId~ela~fl~~y~~~KEq~EYi~WL~~vk~Fv~~k  237 (237)
                      |++||++|++||++||||++||+||++||++|||+||++||++|++||+++
T Consensus       159 De~Lq~~l~~yLeeRGI~~~la~fl~~y~~~KE~~eYi~WL~~lk~Fv~~~  209 (209)
T 1p32_A          159 DWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFLEDLKSFVKSQ  209 (209)
T ss_dssp             CHHHHHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999999999999874

>3qv0_A Mitochondrial acidic protein MAM33; A BOWL like structure, mitochondrial oxidative phosphorylati protein binding; 2.10A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-46  Score=326.20  Aligned_cols=179  Identities=22%  Similarity=0.350  Sum_probs=140.8

Q ss_pred             hhHHHHHHHHHHHHHHhcCCCCCCCC------CCCCcEEEecCCCcEE-EEEeecCCCCeEEEEEEecCC-CCCCC----
Q 026512           56 EGNILRLLRNEIQYELERSSPKQPIT------KFNSFTVDDRPGEQWV-RLTRKFGENEDIKIEATMFDG-SIPVS----  123 (237)
Q Consensus        56 d~~L~~~L~~EI~~E~~~~~~~~~p~------~~~~F~i~d~pG~~~v-~L~R~~~~~E~I~V~~~~~d~-~~p~~----  123 (237)
                      ...|+.+|++||++|++.......|+      ..+||+|.|+||.++| .|+|+|| ||+|+|.|++.+. .+|.+    
T Consensus        11 ~~~l~~~L~~Ei~~E~~~~~~e~~p~~~~~Fl~~~~f~i~d~~G~~~V~llkr~~g-~EkI~V~F~i~d~~~~p~e~~~~   89 (227)
T 3qv0_A           11 TQRVGDILQSELKIEKETLPESTSLDSFNDFLNKYKFSLVETPGKNEAEIVRRTES-GETVHVFFDVAQIANLPYNNAMD   89 (227)
T ss_dssp             HHHHHHHHHHHHHHHHC------CHHHHHHHHHHTTCEEECCTTCSEEEEEEECTT-SCEEEEEEEHHHHC---------
T ss_pred             HHHHHHHHHHHHHHHHhccccccCchHHHHHHhcCCcEEEecCCCceEEEEEeecC-CcEEEEEEEccccccCCcccccc
Confidence            47899999999999998766544442      2379999999999999 8899999 9999999999642 11110    


Q ss_pred             --c--------CCC-CCCccceeeEEEEEEeCCC--cEEEEEeE--ecCCeeEEEEEEEeCCC-----------CCCCCC
Q 026512          124 --K--------AGV-GEDVKLHSTLIVNISKGDE--EVLEMMCS--AWPDSIEITKLFVRGND-----------KLSADP  177 (237)
Q Consensus       124 --~--------~~~-~~~~~~~~~f~V~ItK~~~--~~L~f~C~--~~~de~~I~~v~~~~~~-----------~~~~~~  177 (237)
                        .        +++ +.....+++|+|+|+|+++  ++|.|+|+  +++|+|.|++|+++++.           +.+...
T Consensus        90 e~~~~~~~~~~eee~~~~~~~~~~~~V~ItK~~~~~~aL~~e~~~~~~eg~f~Id~V~~~~d~~~a~~~s~e~~~~r~~~  169 (227)
T 3qv0_A           90 ENTEQNEDGINEDDFDALSDNFANVNVVISKESASEPAVSFELLMNLQEGSFYVDSATPYPSVDAALNQSAEAEITRELV  169 (227)
T ss_dssp             ---------------------CEEEEEEEEC---CCCEEEEEEEEETTTTEEEEEEEEEESSHHHHHCCSHHHHHHHHHS
T ss_pred             cccccccccccccchhcccCCcceEEEEEEeCCCCCceEEEEEEeecCCCcEEEEEEEEecchHhhhccccccccccccc
Confidence              0        000 1123457899999999973  79999999  99999999999987643           234568


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 026512          178 YVGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSYIE  235 (237)
Q Consensus       178 Y~GP~F~~LDe~LQ~~~~~YLeeRGId~ela~fl~~y~~~KEq~EYi~WL~~vk~Fv~  235 (237)
                      |.||+|++||++||++|++||++||||++||+||++||.+|||+||++||++|++||+
T Consensus       170 Y~GP~f~~LDe~Lq~~l~~yLeeRGI~~~la~fl~~y~~~KEq~EYi~WL~~lk~Fv~  227 (227)
T 3qv0_A          170 YHGPPFSNLDEELQESLEAYLESRGVNEELASFISAYSEFKENNEYISWLEKMKKFFH  227 (227)
T ss_dssp             CCCSCGGGSCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCCCccccCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999994

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	237
d1yqfa1	182	d.25.1.1 (A:14-195) Hypothetical protein Lmaj01168	6e-48
d1p32a_	209	d.25.1.1 (A:) Acidic mitochondrial matrix protein	4e-39

>d1yqfa1 d.25.1.1 (A:14-195) Hypothetical protein Lmaj011689 {Leishmania major [TaxId: 5664]} Length = 182

class: Alpha and beta proteins (a+b)
fold: Mitochondrial glycoprotein MAM33-like
superfamily: Mitochondrial glycoprotein MAM33-like
family: Mitochondrial glycoprotein MAM33-like
domain: Hypothetical protein Lmaj011689
species: Leishmania major [TaxId: 5664]

 Score =  154 bits (390), Expect = 6e-48
 Identities = 38/192 (19%), Positives = 77/192 (40%), Gaps = 22/192 (11%)

Query: 54  AFEGNILRLLRNEIQYELERSSPKQPITKFNSFTVDDRPGEQWVRLTRKFGENEDIKIEA 113
           A +  +    R E++ E+ RS   +  T    + V  +PG     LT+ F   ED+ +  
Sbjct: 1   ASDAALADATRRELEEEMGRSDKPEQPTPPAGWQVVRKPGTCTFDLTKSFE-GEDLVVRY 59

Query: 114 TMFDGSIPVSKAGVGEDVKLHSTLIVNISKGDEEVLEMMCSAWPDSIEITKLFVRGNDKL 173
           +    S          D      + V I++ + + ++   S     + +  +       L
Sbjct: 60  STNQDS----------DKANSHNIFVYITQKNGQTMQADLSIEEGELVLNNIRFYDEAAL 109

Query: 174 SAD-----------PYVGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTE 222
           + D            Y GP   ELD +L + +  +LE+RG++E+L  F+  Y    ++ +
Sbjct: 110 AKDTGAEAEAKRNELYTGPLVHELDYDLLNCVMTYLEKRGVDEKLGEFVVLYSFWAEQQD 169

Query: 223 FVRWMQAVKSYI 234
           +  W+  +  + 
Sbjct: 170 YEAWLTTMNKFA 181

>d1p32a_ d.25.1.1 (A:) Acidic mitochondrial matrix protein p32 {Human (Homo sapiens) [TaxId: 9606]} Length = 209

class: Alpha and beta proteins (a+b)
fold: Mitochondrial glycoprotein MAM33-like
superfamily: Mitochondrial glycoprotein MAM33-like
family: Mitochondrial glycoprotein MAM33-like
domain: Acidic mitochondrial matrix protein p32
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (334), Expect = 4e-39
 Identities = 39/207 (18%), Positives = 77/207 (37%), Gaps = 28/207 (13%)

Query: 56  EGNILRLLRNEIQYELERSSPKQPITKFNSFTVDDRPGEQWVRLTRKFGENEDIKIEATM 115
           +   +  L +EI+ E +    K        + ++    E   +L RK    E I +   +
Sbjct: 6   DKAFVDFLSDEIKEERKIQKHKTLPKMSGGWELELNGTE--AKLVRKVA-GEKITVTFNI 62

Query: 116 -------FDGSIPVSKAGVGE----DVKLHSTLIVNISKGDE--EVLEMMCS-------- 154
                  FDG    S+    E    ++      +V + K D+  + L + C         
Sbjct: 63  NNSIPPTFDGEEEPSQGQKVEEQEPELTSTPNFVVEVIKNDDGKKALVLDCHYPEDEVGQ 122

Query: 155 ---AWPDSIEITKLFV-RGNDKLSADPYVGPEFKELDDELQDSLYEFLEERGINEQLTAF 210
              A  D   I ++      +    D         LD  L D L +FL +RG++      
Sbjct: 123 EDEAESDIFSIREVSFQSTGESEWKDTNYTLNTDSLDWALYDHLMDFLADRGVDNTFADE 182

Query: 211 LHEYLKNKDKTEFVRWMQAVKSYIENK 237
           L E     +  E++ +++ +KS+++++
Sbjct: 183 LVELSTALEHQEYITFLEDLKSFVKSQ 209

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	237
d1yqfa1	182	Hypothetical protein Lmaj011689 {Leishmania major	100.0
d1p32a_	209	Acidic mitochondrial matrix protein p32 {Human (Ho	100.0

>d1yqfa1 d.25.1.1 (A:14-195) Hypothetical protein Lmaj011689 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: Mitochondrial glycoprotein MAM33-like
superfamily: Mitochondrial glycoprotein MAM33-like
family: Mitochondrial glycoprotein MAM33-like
domain: Hypothetical protein Lmaj011689
species: Leishmania major [TaxId: 5664]

Probab=100.00  E-value=1.7e-51  Score=345.22  Aligned_cols=171  Identities=21%  Similarity=0.367  Sum_probs=155.2

Q ss_pred             cchhHHHHHHHHHHHHHHhcCCCCCCCCCCCCcEEEecCCCcEEEEEeecCCCCeEEEEEEecCCCCCCCcCCCCCCccc
Q 026512           54 AFEGNILRLLRNEIQYELERSSPKQPITKFNSFTVDDRPGEQWVRLTRKFGENEDIKIEATMFDGSIPVSKAGVGEDVKL  133 (237)
Q Consensus        54 a~d~~L~~~L~~EI~~E~~~~~~~~~p~~~~~F~i~d~pG~~~v~L~R~~~~~E~I~V~~~~~d~~~p~~~~~~~~~~~~  133 (237)
                      |+|+.|+++|++||++|+++..++.+|+.+.||+|.|+||+++|+|+|+|+ +|+|+|+|++++..          +...
T Consensus         1 asd~~L~~~l~~Ei~~E~~~~~~~~~p~~~~gf~i~d~~g~~~v~L~r~~~-~E~I~V~~~~~~~~----------~~~~   69 (182)
T d1yqfa1           1 ASDAALADATRRELEEEMGRSDKPEQPTPPAGWQVVRKPGTCTFDLTKSFE-GEDLVVRYSTNQDS----------DKAN   69 (182)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCSSCCCCCCCCTTCEEEECTTSSEEEEEEEET-TEEEEEEEESCCCS----------SCSS
T ss_pred             CchHHHHHHHHHHHHHHHhcccCCCCCCCCCCCEEEEcCCceEEEEEEecC-CeEEEEEEECCCCC----------CccC
Confidence            578999999999999999998887788888999999999999999999999 99999999997532          1234


Q ss_pred             eeeEEEEEEeCCCcEEEEEeEecCCeeEEEEEEEeCCCC-----------CCCCCcCCCCCCCCCHHHHHHHHHHHHHcC
Q 026512          134 HSTLIVNISKGDEEVLEMMCSAWPDSIEITKLFVRGNDK-----------LSADPYVGPEFKELDDELQDSLYEFLEERG  202 (237)
Q Consensus       134 ~~~f~V~ItK~~~~~L~f~C~~~~de~~I~~v~~~~~~~-----------~~~~~Y~GP~F~~LDe~LQ~~~~~YLeeRG  202 (237)
                      +++|+|+|+|++|++|.|+|++++|++.|++|+++.+..           .+.+.|.||+|++||++||++|++||++||
T Consensus        70 ~~~~~V~i~K~~~~~L~f~c~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~Y~GP~f~~LDe~Lq~~l~~yLeeRG  149 (182)
T d1yqfa1          70 SHNIFVYITQKNGQTMQADLSIEEGELVLNNIRFYDEAALAKDTGAEAEAKRNELYTGPLVHELDYDLLNCVMTYLEKRG  149 (182)
T ss_dssp             CEEEEEEEECTTSCEEEEEEEEETTEEEEEEEEEESSHHHHHCCSHHHHHHHHHSCCCCCGGGSBHHHHHHHHHHHHHTT
T ss_pred             CCCeEEEEEECCCCEEEEEEEecCCceEEEEEEeeCchhhccccccccccccccccCCCCccccCHHHHHHHHHHHHHhC
Confidence            589999999999889999999999999999999876531           123569999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 026512          203 INEQLTAFLHEYLKNKDKTEFVRWMQAVKSYIE  235 (237)
Q Consensus       203 Id~ela~fl~~y~~~KEq~EYi~WL~~vk~Fv~  235 (237)
                      ||++||+||++||++|||+||++||++|++||+
T Consensus       150 Id~~la~fl~~~~~~kE~~eYi~WL~~l~~Fvs  182 (182)
T d1yqfa1         150 VDEKLGEFVVLYSFWAEQQDYEAWLTTMNKFAS  182 (182)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            999999999999999999999999999999985

>d1p32a_ d.25.1.1 (A:) Acidic mitochondrial matrix protein p32 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Mitochondrial glycoprotein MAM33-like
superfamily: Mitochondrial glycoprotein MAM33-like
family: Mitochondrial glycoprotein MAM33-like
domain: Acidic mitochondrial matrix protein p32
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-48  Score=333.01  Aligned_cols=182  Identities=18%  Similarity=0.284  Sum_probs=151.4

Q ss_pred             CcchhHHHHHHHHHHHHHHhcCCCCCCCCCCCCcEEEecCCCcEEEEEeecCCCCeEEEEEEecCCCCCCCcC-------
Q 026512           53 SAFEGNILRLLRNEIQYELERSSPKQPITKFNSFTVDDRPGEQWVRLTRKFGENEDIKIEATMFDGSIPVSKA-------  125 (237)
Q Consensus        53 ~a~d~~L~~~L~~EI~~E~~~~~~~~~p~~~~~F~i~d~pG~~~v~L~R~~~~~E~I~V~~~~~d~~~p~~~~-------  125 (237)
                      +.+|.+|+++|++||++|+++..+..+|+.++||+|++++|  +|+|+|+|| ||+|+|+|+|++...++.++       
T Consensus         3 t~~d~~L~~~L~~EI~~E~~~~~~~~~p~~~~~F~v~~~~~--ev~L~R~~~-~E~I~V~f~v~~~~~~~~~~~~~~~~~   79 (209)
T d1p32a_           3 TDGDKAFVDFLSDEIKEERKIQKHKTLPKMSGGWELELNGT--EAKLVRKVA-GEKITVTFNINNSIPPTFDGEEEPSQG   79 (209)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHSTTSCCCCCTTCCEEEEETT--EEEEEEEET-TEEEEEEEECTTCCC------------
T ss_pred             chhHHHHHHHHHHHHHHHHhcccccCCCCCCCCcEEEecCC--EEEEEEecC-CceEEEEEEcCCCCCCCcCcccccccc
Confidence            45689999999999999999988878888889999999976  699999999 99999999998753222110       


Q ss_pred             C----CCCCccceeeEEEEEEeCC--CcEEEEEeEe-----------cCCeeEEEEEEEeCCC-CCCCCCcCCCCCCCCC
Q 026512          126 G----VGEDVKLHSTLIVNISKGD--EEVLEMMCSA-----------WPDSIEITKLFVRGND-KLSADPYVGPEFKELD  187 (237)
Q Consensus       126 ~----~~~~~~~~~~f~V~ItK~~--~~~L~f~C~~-----------~~de~~I~~v~~~~~~-~~~~~~Y~GP~F~~LD  187 (237)
                      +    ...++..+++|+|+|+|++  |++|.|.|++           +++.|.|++|++...+ ......|.||+|++||
T Consensus        80 ~~~~~~~~~~~~~~~~~V~Itk~~~~~~~L~f~c~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~gp~f~~LD  159 (209)
T d1p32a_          80 QKVEEQEPELTSTPNFVVEVIKNDDGKKALVLDCHYPEDEVGQEDEAESDIFSIREVSFQSTGESEWKDTNYTLNTDSLD  159 (209)
T ss_dssp             ---------CCCCCCEEEEEEEGGGTTEEEEEEEECCCCC------TTCCSCEEEEEEEEETTCSSCCTTSCEEESTTCC
T ss_pred             ccccccccccccCCceEEEEEecCCCCceEEEEeecccccccccccccccceEEeEEeeeccccccccccccCCChhhcC
Confidence            0    1234577889999999974  6799999984           5556889999875432 2233468899999999


Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhcC
Q 026512          188 DELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSYIENK  237 (237)
Q Consensus       188 e~LQ~~~~~YLeeRGId~ela~fl~~y~~~KEq~EYi~WL~~vk~Fv~~k  237 (237)
                      ++||++|++||++||||++||.||++||++|||+||++||++||+||+.|
T Consensus       160 e~Lq~~~~~YLeeRGI~~~la~fi~~y~~~KEq~EYi~WL~~lk~Fv~~~  209 (209)
T d1p32a_         160 WALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFLEDLKSFVKSQ  209 (209)
T ss_dssp             HHHHHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999986