Citrus Sinensis ID: 026515

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
Protein Sequence
MEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSLLDSFRFCSLGCKLGAMKRGDLDLTFTLRVKHKDGFHGGSESDESSTPKKIRRTPNFNRLMEGLTIYRHSHHNTNEGAERSCSSGDEATTKLSPATPPIYNHGNARRRKGIPHRAPF
Secondary Structure (PSIPRED)
ccccccccccHHHHHccccccccccccccccccccEEEcccccccccHHHHHcccccccEEEEEcccccEEEccccccEEEEcccEEEEEcccEEEEEcccccccccccccccccccccccccccEEEEccccccEEEcccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHccccHHccccccccccEEEEccccccHHHHHccccccccEEEEEEEEcccEEEHHHHHHHEcccccEEEEEEccEEEEEccccccccccccccccHHHHHHccccccEEEEEEEEEEEEcccccccHHccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccc
Coil and Loop (DISEMBL)
medddmgpqwlkpmlrasyfipcvvhgdsnksecnmfcldcmgnafcsyclinhkdhrvvQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVflnerpqprpgkgvtntcEICCRSLLDsfrfcslgcklgamkrgdldltftlrvkhkdgfhggsesdesstpkkirrtpnfnRLMEGLTIYrhshhntnegaerscssgdeattklspatppiynhgnarrrkgiphrapf
Flexible Loop (DISEMBL)
MEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLnerpqprpgkgvtNTCEICCRSLLDSFRFCSLGCKLGAMKRGDLDLTFTLRVkhkdgfhggsesdesstpkkirrtpnfNRLMEGLTIYRHSHHNTNEGAERSCSSGDEattklspatppiynhgnarrrkgiphrapf
Low Complexity Region (SEG)
MEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSLLDSFRFCSLGCKLGAMKRGDLDLTFTLRVKHKDGFHGGSESDESSTPKKIRRTPNFNRLMEGLTIYRHSHHNTNEGAERSCSSGDEATTKLSPATPPIYNHGNARRRKGIPHRAPF
Disordered region (IsUnstruct)
*********WLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNER*****GKGVTNTCEICCRSLLDSFRFCSLGCKLGAMKRGDLDLTFTLRVKH******************************GLTIY**************************************************
Disordered Region (DISOPRED)
*****MG***LKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVF****************CEICCRSLLDSFRFCSLGCKLGAMKRG******************************************************************************************IPHRAPF
Disordered Region (DISEMBL)
MEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSLLDSFRFCSLGCKLGAMKRGDLDLTFTLRVKHKDG**************KIRRTPNFNRLMEGLTIYRHSHH*****************TKLSPATPPIYNHGNARRR*********
Disordered Region (DISPRO)
*****MGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSLLDSFRFCSLGCKLGAMKRGDLDLTF*L*****************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSLLDSFRFCSLGCKLGAMKRGDLDLTFTLRVKHKDGFHGGSESDESSTPKKIRRTPNFNRLMEGLTIYRHSHHNTNEGAERSCSSGDEATTKLSPATPPIYNHGNARRRKGIPHRAPF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
224083394	238	predicted protein [Populus trichocarpa]	0.970	0.966	0.836	1e-110
255539370	235	protein with unknown function [Ricinus c	0.957	0.965	0.819	1e-109
224065625	238	predicted protein [Populus trichocarpa]	0.970	0.966	0.819	1e-108
225457699	247	PREDICTED: uncharacterized protein LOC10	0.995	0.955	0.780	1e-103
147811534	240	hypothetical protein VITISV_044258 [Viti	0.995	0.983	0.780	1e-103
18394936	246	PLATZ transcription factor domain-contai	0.991	0.955	0.743	1e-99
186478716	243	PLATZ transcription factor domain-contai	0.991	0.967	0.743	1e-99
297845080	246	zinc-binding family protein [Arabidopsis	0.995	0.959	0.742	1e-99
21537073	246	unknown [Arabidopsis thaliana]	0.991	0.955	0.739	6e-99
312282733	240	unnamed protein product [Thellungiella h	0.978	0.966	0.720	5e-93

>gi|224083394|ref|XP_002307009.1| predicted protein [Populus trichocarpa] gi|118489570|gb|ABK96587.1| unknown [Populus trichocarpa x Populus deltoides] gi|222856458|gb|EEE94005.1| predicted protein [Populus trichocarpa]

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/238 (83%), Positives = 212/238 (89%), Gaps = 8/238 (3%)

Query: 1   MEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVV 60
           M + DMGP WL PMLRASYFIPC VHG+SNKSECNMFCLDCMGNAFCSYCLI HKDHRVV
Sbjct: 8   MGNHDMGPPWLIPMLRASYFIPCGVHGESNKSECNMFCLDCMGNAFCSYCLIYHKDHRVV 67

Query: 61  QIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRS 120
           QIRRSSYHNVVRVNEIQK+IDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRS
Sbjct: 68  QIRRSSYHNVVRVNEIQKYIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRS 127

Query: 121 LLDSFRFCSLGCKLGAMKRGDLDLTFTLRVKH-KDGFHGGSESDESSTPKKIRRTPNFNR 179
           LLDSFRFCSLGCKLG MKRGD DLTF +++KH +D F GGSESDESSTPKKIRRT  FNR
Sbjct: 128 LLDSFRFCSLGCKLGGMKRGDPDLTFAVKLKHNRDPFFGGSESDESSTPKKIRRTHAFNR 187

Query: 180 LMEGLTIYRHSHHNTNEGAERSCSSGDEATTKLSPATPPIYNHGNARRRKGIPHRAPF 237
           LMEGL+IY     + N+GAE   SSGD+A T +SPATPPI+NH NARRRKGIPHRAPF
Sbjct: 188 LMEGLSIYS----SNNDGAE---SSGDDAATNISPATPPIFNHRNARRRKGIPHRAPF 238

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539370|ref|XP_002510750.1| protein with unknown function [Ricinus communis] gi|223551451|gb|EEF52937.1| protein with unknown function [Ricinus communis]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/238 (81%), Positives = 208/238 (87%), Gaps = 11/238 (4%)

Query: 1   MEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVV 60
           M   D+GP WL+PMLRASYF+PC  HGDSNKSECN+FCLDCMGNA CSYCLINHKDHR+V
Sbjct: 8   MVHHDLGPPWLRPMLRASYFVPCSFHGDSNKSECNLFCLDCMGNALCSYCLINHKDHRIV 67

Query: 61  QIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRS 120
           QIRRSSYHNVVRVNEIQK+IDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRS
Sbjct: 68  QIRRSSYHNVVRVNEIQKYIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRS 127

Query: 121 LLDSFRFCSLGCKLGAMKRGDLDLTFTLRVKH-KDGFHGGSESDESSTPKKIRRTPNFNR 179
           LLDSFRFCSLGCKLG MKRGD DLTFTLR+KH +D F GGSESDESSTPKKIR+T  FNR
Sbjct: 128 LLDSFRFCSLGCKLGGMKRGDPDLTFTLRMKHNRDPFLGGSESDESSTPKKIRKTHAFNR 187

Query: 180 LMEGLTIYRHSHHNTNEGAERSCSSGDEATTKLSPATPPIYNHGNARRRKGIPHRAPF 237
           LM+GL+IY    H          SSGDEATT +SP+TPPIYNH NARRRKGIPHRAPF
Sbjct: 188 LMDGLSIYSSDGH----------SSGDEATTNISPSTPPIYNHRNARRRKGIPHRAPF 235

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065625|ref|XP_002301890.1| predicted protein [Populus trichocarpa] gi|222843616|gb|EEE81163.1| predicted protein [Populus trichocarpa]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/238 (81%), Positives = 210/238 (88%), Gaps = 8/238 (3%)

Query: 1   MEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVV 60
           M + D GP WL PMLRASYFIPC VHG+SNKSECNMFCLDCMGNAFCSYCLI H+DHRVV
Sbjct: 8   MRNHDTGPPWLIPMLRASYFIPCAVHGESNKSECNMFCLDCMGNAFCSYCLIYHRDHRVV 67

Query: 61  QIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRS 120
           QIRRSSYHNVVRVNEIQK+IDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRS
Sbjct: 68  QIRRSSYHNVVRVNEIQKYIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRS 127

Query: 121 LLDSFRFCSLGCKLGAMKRGDLDLTFTLRVKH-KDGFHGGSESDESSTPKKIRRTPNFNR 179
           LLDSFRFCSLGCKLG MKRGD DLTF L++K  +D F GGSESDESSTPKKIRRT  FNR
Sbjct: 128 LLDSFRFCSLGCKLGGMKRGDPDLTFALKLKQNRDPFFGGSESDESSTPKKIRRTHAFNR 187

Query: 180 LMEGLTIYRHSHHNTNEGAERSCSSGDEATTKLSPATPPIYNHGNARRRKGIPHRAPF 237
           LM+GL+IY     + N+GAE   SSGD+A T +SPATPP++NH NARRRKGIPHRAPF
Sbjct: 188 LMDGLSIY----SSNNDGAE---SSGDDAATNISPATPPLFNHRNARRRKGIPHRAPF 238

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457699|ref|XP_002277078.1| PREDICTED: uncharacterized protein LOC100246080 [Vitis vinifera]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/241 (78%), Positives = 209/241 (86%), Gaps = 5/241 (2%)

Query: 1   MEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVV 60
           M +D +GP WLKPMLRASYF+PC +HGDSNKSECNMFCLDCMG+A CSYCLI+HKDH VV
Sbjct: 8   MGNDHLGPPWLKPMLRASYFVPCGIHGDSNKSECNMFCLDCMGDALCSYCLIHHKDHCVV 67

Query: 61  QIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRS 120
           QIRRSSYHNVVRVNEIQK+IDISCVQTY+INSAKIVFLNERPQPRPGKGVTNTCEICCRS
Sbjct: 68  QIRRSSYHNVVRVNEIQKYIDISCVQTYVINSAKIVFLNERPQPRPGKGVTNTCEICCRS 127

Query: 121 LLDSFRFCSLGCKLGAMKRGDLDLTFTLRVKH-KDGFHGGSESDESSTPKKIRRTPNFNR 179
           LLDSFRFCSLGCKLGAMKRGD DLTF L++KH ++ FH GSESDESSTP+K +RT  F+R
Sbjct: 128 LLDSFRFCSLGCKLGAMKRGDPDLTFWLKLKHGRETFH-GSESDESSTPRKFQRTHLFSR 186

Query: 180 LM-EGLTIYRHSHHNTNEGAERSC--SSGDEATTKLSPATPPIYNHGNARRRKGIPHRAP 236
           LM +G TI    HH+    A++S   SSGDE    +SPATPPI+NH NARRRKGIPHRAP
Sbjct: 187 LMIDGPTISLDGHHDATVAADKSTASSSGDETINNISPATPPIFNHSNARRRKGIPHRAP 246

Query: 237 F 237
           F
Sbjct: 247 F 247

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147811534|emb|CAN67639.1| hypothetical protein VITISV_044258 [Vitis vinifera]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/241 (78%), Positives = 209/241 (86%), Gaps = 5/241 (2%)

Query: 1   MEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVV 60
           M +D +GP WLKPMLRASYF+PC +HGDSNKSECNMFCLDCMG+A CSYCLI+HKDH VV
Sbjct: 1   MGNDHLGPPWLKPMLRASYFVPCGIHGDSNKSECNMFCLDCMGDALCSYCLIHHKDHCVV 60

Query: 61  QIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRS 120
           QIRRSSYHNVVRVNEIQK+IDISCVQTY+INSAKIVFLNERPQPRPGKGVTNTCEICCRS
Sbjct: 61  QIRRSSYHNVVRVNEIQKYIDISCVQTYVINSAKIVFLNERPQPRPGKGVTNTCEICCRS 120

Query: 121 LLDSFRFCSLGCKLGAMKRGDLDLTFTLRVKH-KDGFHGGSESDESSTPKKIRRTPNFNR 179
           LLDSFRFCSLGCKLGAMKRGD DLTF L++KH ++ FH GSESDESSTP+K +RT  F+R
Sbjct: 121 LLDSFRFCSLGCKLGAMKRGDPDLTFWLKLKHGRETFH-GSESDESSTPRKFQRTHLFSR 179

Query: 180 LM-EGLTIYRHSHHNTNEGAERSC--SSGDEATTKLSPATPPIYNHGNARRRKGIPHRAP 236
           LM +G TI    HH+    A++S   SSGDE    +SPATPPI+NH NARRRKGIPHRAP
Sbjct: 180 LMIDGPTISLDGHHDATVAADKSTASSSGDETINNISPATPPIFNHSNARRRKGIPHRAP 239

Query: 237 F 237
           F
Sbjct: 240 F 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18394936|ref|NP_564128.1| PLATZ transcription factor domain-containing protein [Arabidopsis thaliana] gi|14030627|gb|AAK52988.1|AF375404_1 At1g21000/F9H16_1 [Arabidopsis thaliana] gi|16226407|gb|AAL16160.1|AF428392_1 At1g21000/F9H16_1 [Arabidopsis thaliana] gi|22136542|gb|AAM91057.1| At1g21000/F9H16_1 [Arabidopsis thaliana] gi|332191931|gb|AEE30052.1| PLATZ transcription factor domain-containing protein [Arabidopsis thaliana]

 Score =  368 bits (944), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 177/238 (74%), Positives = 197/238 (82%), Gaps = 3/238 (1%)

Query: 2   EDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQ 61
           E+D   P WL PMLR SYF+PC +H DSNK+ECN+FCLDC GNAFCSYCL+ HKDHRVVQ
Sbjct: 10  EEDYTSPPWLMPMLRGSYFVPCSIHVDSNKNECNLFCLDCAGNAFCSYCLVKHKDHRVVQ 69

Query: 62  IRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSL 121
           IRRSSYHNVVRVNEIQKFIDI+CVQTYIINSAKIVFLNERPQPR GKGVTNTCEICCRSL
Sbjct: 70  IRRSSYHNVVRVNEIQKFIDIACVQTYIINSAKIVFLNERPQPRIGKGVTNTCEICCRSL 129

Query: 122 LDSFRFCSLGCKLGAMKRGDLDLTFTLRVKHKDGFHGGSESDESSTPKKIRRTPNFNRLM 181
           LDSFRFCSLGCKLG M+RGDL LTF+L+ KH   + GGSESDE++TP K+R+T  FNRLM
Sbjct: 130 LDSFRFCSLGCKLGGMRRGDLSLTFSLKGKHGREYLGGSESDEATTPTKMRKTNAFNRLM 189

Query: 182 EGLTI--YRHSHHNTNEGAERSCSSGDEATTKLSPATPPIYNHGNARRRKGIPHRAPF 237
            GL+I   R   +  N G +RS SSGDE     SP TPPIYNH N+ RRKG+PHRAPF
Sbjct: 190 SGLSISTVRFDDYGPN-GDQRSSSSGDEGGFSFSPGTPPIYNHRNSSRRKGVPHRAPF 246

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186478716|ref|NP_001117322.1| PLATZ transcription factor domain-containing protein [Arabidopsis thaliana] gi|4836888|gb|AAD30591.1|AC007369_1 Unknown protein [Arabidopsis thaliana] gi|13877713|gb|AAK43934.1|AF370615_1 Unknown protein [Arabidopsis thaliana] gi|332191932|gb|AEE30053.1| PLATZ transcription factor domain-containing protein [Arabidopsis thaliana]

 Score =  368 bits (944), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 177/238 (74%), Positives = 197/238 (82%), Gaps = 3/238 (1%)

Query: 2   EDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQ 61
           E+D   P WL PMLR SYF+PC +H DSNK+ECN+FCLDC GNAFCSYCL+ HKDHRVVQ
Sbjct: 7   EEDYTSPPWLMPMLRGSYFVPCSIHVDSNKNECNLFCLDCAGNAFCSYCLVKHKDHRVVQ 66

Query: 62  IRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSL 121
           IRRSSYHNVVRVNEIQKFIDI+CVQTYIINSAKIVFLNERPQPR GKGVTNTCEICCRSL
Sbjct: 67  IRRSSYHNVVRVNEIQKFIDIACVQTYIINSAKIVFLNERPQPRIGKGVTNTCEICCRSL 126

Query: 122 LDSFRFCSLGCKLGAMKRGDLDLTFTLRVKHKDGFHGGSESDESSTPKKIRRTPNFNRLM 181
           LDSFRFCSLGCKLG M+RGDL LTF+L+ KH   + GGSESDE++TP K+R+T  FNRLM
Sbjct: 127 LDSFRFCSLGCKLGGMRRGDLSLTFSLKGKHGREYLGGSESDEATTPTKMRKTNAFNRLM 186

Query: 182 EGLTI--YRHSHHNTNEGAERSCSSGDEATTKLSPATPPIYNHGNARRRKGIPHRAPF 237
            GL+I   R   +  N G +RS SSGDE     SP TPPIYNH N+ RRKG+PHRAPF
Sbjct: 187 SGLSISTVRFDDYGPN-GDQRSSSSGDEGGFSFSPGTPPIYNHRNSSRRKGVPHRAPF 243

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845080|ref|XP_002890421.1| zinc-binding family protein [Arabidopsis lyrata subsp. lyrata] gi|297336263|gb|EFH66680.1| zinc-binding family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  368 bits (944), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 176/237 (74%), Positives = 194/237 (81%), Gaps = 1/237 (0%)

Query: 2   EDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQ 61
           E+D   P WL PMLR SYF+PC +H DSNK+ECN+FCLDC GNAFCSYCL+ HKDHRVVQ
Sbjct: 10  EEDYTSPPWLMPMLRGSYFVPCSIHVDSNKNECNLFCLDCAGNAFCSYCLVKHKDHRVVQ 69

Query: 62  IRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSL 121
           IRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPR GKGVTNTCEICCRSL
Sbjct: 70  IRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRIGKGVTNTCEICCRSL 129

Query: 122 LDSFRFCSLGCKLGAMKRGDLDLTFTLRVKHKDGFHGGSESDESSTPKKIRRTPNFNRLM 181
           LDSFRFCSLGCKLG MKRGD  LTF+L+ KH   + GGSESDE++TP K+R+T  FNRLM
Sbjct: 130 LDSFRFCSLGCKLGGMKRGDSSLTFSLKGKHGREYQGGSESDEATTPTKMRKTNAFNRLM 189

Query: 182 EGLTIYRHSHHNTNEGA-ERSCSSGDEATTKLSPATPPIYNHGNARRRKGIPHRAPF 237
            GL+I      +   G  +RS SSGDE     SP TPPIYNH N+ RRKG+PHRAPF
Sbjct: 190 SGLSISTVRFDDYGPGGDQRSSSSGDEGGFSFSPGTPPIYNHRNSSRRKGVPHRAPF 246

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537073|gb|AAM61414.1| unknown [Arabidopsis thaliana]

 Score =  365 bits (938), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 176/238 (73%), Positives = 197/238 (82%), Gaps = 3/238 (1%)

Query: 2   EDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQ 61
           E+D   P WL PMLR SYF+PC +H DSNK+ECN+FCLDC GNAFCSYCL+ HKDHRVVQ
Sbjct: 10  EEDYTSPPWLMPMLRGSYFVPCSIHVDSNKNECNLFCLDCAGNAFCSYCLVKHKDHRVVQ 69

Query: 62  IRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSL 121
           IRRSSYHNVVRVNEIQKFIDI+CVQT+IINSAKIVFLNERPQPR GKGVTNTCEICCRSL
Sbjct: 70  IRRSSYHNVVRVNEIQKFIDIACVQTHIINSAKIVFLNERPQPRIGKGVTNTCEICCRSL 129

Query: 122 LDSFRFCSLGCKLGAMKRGDLDLTFTLRVKHKDGFHGGSESDESSTPKKIRRTPNFNRLM 181
           LDSFRFCSLGCKLG M+RGDL LTF+L+ KH   + GGSESDE++TP K+R+T  FNRLM
Sbjct: 130 LDSFRFCSLGCKLGGMRRGDLSLTFSLKGKHGREYLGGSESDEATTPTKMRKTNAFNRLM 189

Query: 182 EGLTI--YRHSHHNTNEGAERSCSSGDEATTKLSPATPPIYNHGNARRRKGIPHRAPF 237
            GL+I   R   +  N G +RS SSGDE     SP TPPIYNH N+ RRKG+PHRAPF
Sbjct: 190 SGLSISTVRFDDYGPN-GDQRSSSSGDEGGFSFSPGTPPIYNHRNSSRRKGVPHRAPF 246

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282733|dbj|BAJ34232.1| unnamed protein product [Thellungiella halophila]

 Score =  346 bits (887), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 170/236 (72%), Positives = 193/236 (81%), Gaps = 4/236 (1%)

Query: 2   EDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQ 61
           ED+ + P WL PMLRA YF+PC +H DSNKSECNMFCLDC  NAFC YCLI+HK+HRV+Q
Sbjct: 9   EDNYLSPPWLIPMLRADYFVPCSIHADSNKSECNMFCLDCTSNAFCPYCLIDHKNHRVLQ 68

Query: 62  IRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSL 121
           IRRSSYHNVVRVNEIQK+IDISCVQTYIINSA+IVFLNERPQPR GKGVTNTCEICCRSL
Sbjct: 69  IRRSSYHNVVRVNEIQKYIDISCVQTYIINSARIVFLNERPQPRIGKGVTNTCEICCRSL 128

Query: 122 LDSFRFCSLGCKLGAMKRGDLDLTFTLRVKHKDGFHGGSESDESSTPKKIRRTPNFNRLM 181
           LDSFRFCSLGCKLG MKRG+  LTF+L+ KH   + GGSESDE++TP KIR+T  FNRLM
Sbjct: 129 LDSFRFCSLGCKLGGMKRGNQSLTFSLKGKHGREYQGGSESDEATTPTKIRKTCAFNRLM 188

Query: 182 EGLTIYRHSHHNTNEGAERSCSSGDEATTKLSPATPPIYNHGNARRRKGIPHRAPF 237
            GL+I        +  +    SSGD++   LSP TPPIYNH N+ RRKG+PHRAPF
Sbjct: 189 SGLSISTVKSDYFSGSS----SSGDDSGFNLSPGTPPIYNHRNSSRRKGVPHRAPF 240

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
TAIR|locus:2037405	246	AT1G21000 [Arabidopsis thalian	0.991	0.955	0.743	3.7e-96
TAIR|locus:2011721	245	AT1G76590 [Arabidopsis thalian	0.962	0.930	0.739	1.4e-89
TAIR|locus:2141070	227	AT4G17900 [Arabidopsis thalian	0.586	0.612	0.671	8.8e-61
TAIR|locus:2035614	213	AT1G32700 [Arabidopsis thalian	0.691	0.769	0.574	2.9e-60
TAIR|locus:2009879	216	AT1G43000 [Arabidopsis thalian	0.734	0.805	0.620	9.6e-57
TAIR|locus:2178580	226	AT5G46710 [Arabidopsis thalian	0.755	0.792	0.467	6.4e-44
TAIR|locus:2057867	189	AT2G27930 [Arabidopsis thalian	0.700	0.878	0.460	7.8e-39
TAIR|locus:1009023224	256	AT2G12646 "AT2G12646" [Arabido	0.607	0.562	0.434	4.9e-33
TAIR|locus:2015761	243	AT1G31040 [Arabidopsis thalian	0.932	0.909	0.369	6e-32
TAIR|locus:2101881	245	AT3G60670 [Arabidopsis thalian	0.624	0.604	0.413	6.4e-28

TAIR|locus:2037405 AT1G21000 [Arabidopsis thaliana (taxid:3702)]

 Score = 956 (341.6 bits), Expect = 3.7e-96, P = 3.7e-96
 Identities = 177/238 (74%), Positives = 197/238 (82%)

Query:     2 EDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQ 61
             E+D   P WL PMLR SYF+PC +H DSNK+ECN+FCLDC GNAFCSYCL+ HKDHRVVQ
Sbjct:    10 EEDYTSPPWLMPMLRGSYFVPCSIHVDSNKNECNLFCLDCAGNAFCSYCLVKHKDHRVVQ 69

Query:    62 IRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSL 121
             IRRSSYHNVVRVNEIQKFIDI+CVQTYIINSAKIVFLNERPQPR GKGVTNTCEICCRSL
Sbjct:    70 IRRSSYHNVVRVNEIQKFIDIACVQTYIINSAKIVFLNERPQPRIGKGVTNTCEICCRSL 129

Query:   122 LDSFRFCSLGCKLGAMKRGDLDLTFTLRVKHKDGFHGGSESDESSTPKKIRRTPNFNRLM 181
             LDSFRFCSLGCKLG M+RGDL LTF+L+ KH   + GGSESDE++TP K+R+T  FNRLM
Sbjct:   130 LDSFRFCSLGCKLGGMRRGDLSLTFSLKGKHGREYLGGSESDEATTPTKMRKTNAFNRLM 189

Query:   182 EGLTI--YRHSHHNTNEGAERSCSSGDEATTKLSPATPPIYNHGNARRRKGIPHRAPF 237
              GL+I   R   +  N G +RS SSGDE     SP TPPIYNH N+ RRKG+PHRAPF
Sbjct:   190 SGLSISTVRFDDYGPN-GDQRSSSSGDEGGFSFSPGTPPIYNHRNSSRRKGVPHRAPF 246

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2011721 AT1G76590 [Arabidopsis thaliana (taxid:3702)]

 Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
 Identities = 170/230 (73%), Positives = 189/230 (82%)

Query:     8 PQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSY 67
             P WL PMLRA+YFIPC +H  SNKSECNMFCLDC   AFCSYCL+NH++HRV+QIRRSSY
Sbjct:    18 PPWLIPMLRANYFIPCSIHAASNKSECNMFCLDCSSEAFCSYCLLNHRNHRVLQIRRSSY 77

Query:    68 HNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSLLDSFRF 127
             HNVVRVNEIQK+IDISCVQTYIINSA+IVFLNERPQPR GKGVTNTCEICCRSLLDSFRF
Sbjct:    78 HNVVRVNEIQKYIDISCVQTYIINSARIVFLNERPQPRIGKGVTNTCEICCRSLLDSFRF 137

Query:   128 CSLGCKLGAMKRGDLDLTFTLRVKHKDGFHGGSESDESSTPKKIRRTPNFNRLMEGLTIY 187
             CSLGCKLG MKR D  LTF+LR KH   + G  ESDE++TP KIR+T  FNRLM GL+I 
Sbjct:   138 CSLGCKLGGMKR-DPSLTFSLRGKHGREYEGEWESDEATTPTKIRKTCAFNRLMSGLSIS 196

Query:   188 RHSHHNTNEGAERSCSSGDEATTKLSPATPPIYNHGNARRRKGIPHRAPF 237
                    + G + S SSGDE+  KLSP TPPIYNH N+ RRKG+PHRAPF
Sbjct:   197 TVKCDYLS-GDQPSSSSGDESGFKLSPGTPPIYNHRNSSRRKGVPHRAPF 245

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2141070 AT4G17900 [Arabidopsis thaliana (taxid:3702)]

 Score = 555 (200.4 bits), Expect = 8.8e-61, Sum P(2) = 8.8e-61
 Identities = 94/140 (67%), Positives = 116/140 (82%)

Query:     2 EDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQ 61
             E+++  P WLKP+L+  +F+ C  HGDS+KSECNM+CLDC     CS CL +HKDHR +Q
Sbjct:    28 EEENRWPPWLKPLLKEQFFVHCKFHGDSHKSECNMYCLDCTNGPLCSLCLAHHKDHRTIQ 87

Query:    62 IRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSL 121
             IRRSSYH+V+RVNEIQK++DI  +QTY+INSAK+VFLNERPQPRPGKGVTNTC++C RSL
Sbjct:    88 IRRSSYHDVIRVNEIQKYLDIGGIQTYVINSAKVVFLNERPQPRPGKGVTNTCKVCYRSL 147

Query:   122 LD-SFRFCSLGCKLGAMKRG 140
             +D SFRFCSLGCK+    RG
Sbjct:   148 VDDSFRFCSLGCKIAGTSRG 167

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2035614 AT1G32700 [Arabidopsis thaliana (taxid:3702)]

 Score = 542 (195.9 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
 Identities = 100/174 (57%), Positives = 126/174 (72%)

Query:     8 PQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSY 67
             P WLKP+LR  +F+ C +H DS+KSECNM+CLDC     CS CL  HKDH  +QIRRSSY
Sbjct:    12 PHWLKPLLREKFFVQCKLHADSHKSECNMYCLDCTNGPLCSLCLSFHKDHHAIQIRRSSY 71

Query:    68 HNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSLLDSFRF 127
             H+V+RV+EIQKF+DI+ VQTY+INSAK+VFLNERPQPRPGKGV NTCE+C RSL+DSFRF
Sbjct:    72 HDVIRVSEIQKFLDITGVQTYVINSAKVVFLNERPQPRPGKGVINTCEVCYRSLVDSFRF 131

Query:   128 CSLGCKLGAMKRGDLDLTFTLRVKHKDGFHGGSESDESSTPKKIRRTPNFNRLM 181
             CSLGCK+  + +           K K+  +  S+SD+S +   I R    + +M
Sbjct:   132 CSLGCKISGISKK----------KRKEWTNNLSDSDDSYSSTSIGRLKKNDDIM 175

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2009879 AT1G43000 [Arabidopsis thaliana (taxid:3702)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 116/187 (62%), Positives = 139/187 (74%)

Query:     1 MEDDD-MGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRV 59
             ME+DD M P WL PMLRA YF+ C +H  S+KSECN+FCLDC GNAFCS CL +H+ HRV
Sbjct:     1 MENDDVMTPPWLTPMLRADYFVTCSIHSQSSKSECNLFCLDCSGNAFCSSCLAHHRTHRV 60

Query:    60 VQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCR 119
             +QIRRSSYHNVVRV+EIQK IDISC+QTY+INSAKI FLN RPQ R GK +  TC+IC R
Sbjct:    61 IQIRRSSYHNVVRVSEIQKHIDISCIQTYVINSAKIFFLNARPQCRTGKSLNKTCQICSR 120

Query:   120 SLLDSFRFCSLGCKLGAMKRGDLDLTFTLRVKHKDGFHGGSESDESSTPKKIRRTPNFNR 179
             +LLDSF FCSL CKL  +K G+ D   TL       FH G +SD+SS   KI  T   +R
Sbjct:   121 NLLDSFLFCSLACKLEGVKNGE-DPNLTL-------FHSG-KSDDSS---KIINTGICSR 168

Query:   180 LMEGLTI 186
             L++G++I
Sbjct:   169 LIDGISI 175

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2178580 AT5G46710 [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 87/186 (46%), Positives = 119/186 (63%)

Query:     1 MEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVV 60
             ME ++  P WLKP+L   +F  C  HG   ++EC M+CLDC  ++FCS CL  H++HR +
Sbjct:    21 MEGENQWPIWLKPLLNQHFFAQCKFHGHLPRTECKMYCLDCTNDSFCSLCLSEHENHRTI 80

Query:    61 QIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRS 120
             QIR SSYHNV +V+EIQK++DIS +QTY+INS+K++FLNERPQ +PGKG TN C +C R 
Sbjct:    81 QIRISSYHNVTKVDEIQKYLDISSIQTYVINSSKVLFLNERPQSKPGKGFTNACMVCYRG 140

Query:   121 LLDS-FRFCSLGCKLGAMKRGDLDLTFTLRVKHKDGFHGGSESDESSTPKKIRRTPNFNR 179
             L ++ FRFCS+GCK+     G     F  RVKH       S ++ S          N N 
Sbjct:   141 LAENCFRFCSIGCKVAGTS-G----VFQKRVKHTTNDSDNS-NNSSGVENNSSGAENGNS 194

Query:   180 LMEGLT 185
              ++ L+
Sbjct:   195 NLQSLS 200

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2057867 AT2G27930 [Arabidopsis thaliana (taxid:3702)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 81/176 (46%), Positives = 115/176 (65%)

Query:     8 PQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLIN-HKDHRVVQIRRSS 66
             P+WL+ +LR ++F  C  H ++ ++ECNMFCL C   AFC YC  + H DH V+QIRRSS
Sbjct:     4 PKWLEGLLRTNFFSICPRHRETPRNECNMFCLSCQNAAFCFYCRSSFHIDHPVLQIRRSS 63

Query:    67 YHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGK-GVTNT--------CEIC 117
             YH+VVRV+EI+  +DI  VQTY+INSA+++FLNERPQP+    G  ++        CE C
Sbjct:    64 YHDVVRVSEIENALDIRGVQTYVINSARVLFLNERPQPKNSSHGAASSTPKTMSYFCETC 123

Query:   118 CRSLLDSFRFCSLGCKLGAMKRGDLDLTFTLRVKHKDGFHGGSESDESSTPKKIRR 173
             CR+LLD FRFCSLGCK+  M++   +    LR + +   H G+     ++  + R+
Sbjct:   124 CRTLLDPFRFCSLGCKVEGMRKNKEEEEERLRKERQQETHKGTHPPTHTSNSRRRK 179

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1009023224 AT2G12646 "AT2G12646" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
 Identities = 63/145 (43%), Positives = 91/145 (62%)

Query:     8 PQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSY 67
             P WL  +    +F+ C  H  + K+E N+ CLDC   + C +C+ +H+ HR++Q+RR  Y
Sbjct:     6 PAWLDALYAEKFFVGCPYHETAKKNERNVCCLDCC-TSLCPHCVPSHRFHRLLQVRRYVY 64

Query:    68 HNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSLLDSFRF 127
             H+VVR+ ++QK ID S VQ Y INSAK+VF+ +RPQ R  KG  N C  C RSL + +  
Sbjct:    65 HDVVRLEDLQKLIDCSNVQAYTINSAKVVFIKKRPQNRQFKGAGNYCTSCDRSLQEPYIH 124

Query:   128 CSLGCKLGAMKRGDLDLTFTLRVKH 152
             CSLGCK+  + +   D+T  L+  H
Sbjct:   125 CSLGCKVDFVMKRYRDITPFLKPCH 149

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015761 AT1G31040 [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 86/233 (36%), Positives = 125/233 (53%)

Query:     8 PQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSY 67
             P WL+ ++  ++F  C +H    KSE N+FCL C  +  C +CL +H+ H ++Q+RR  Y
Sbjct:    19 PAWLEGLMAETFFSSCGIHETRRKSEKNVFCLLCCLSV-CPHCLPSHRSHPLLQVRRYVY 77

Query:    68 HNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSLLDSFRF 127
             H+VVR+++++K ID S VQ Y IN AK++FLN+R Q R  K  +N C  C R L + F F
Sbjct:    78 HDVVRLSDLEKLIDCSYVQPYTINGAKVIFLNQRQQSR-AKVSSNVCFTCDRILQEPFHF 136

Query:   128 CSLGCKLGAMK-RGDLDLTFTL-RVKHKDGFHGGSESDESSTPKKIRRTPNFNRLMEGLT 185
             CSL CK+  +  +GD DL+  L R+   D    G   D      +I    +   +   L 
Sbjct:   137 CSLSCKVDYLSYQGD-DLSSILYRIDESDFTFEGLRMDGHDQLGEISTMEDGEDI---LV 192

Query:   186 IYRHSHH-NTNEGAERSCSSGDEATTKLSPATPPIYNHGNARRRKGIPHRAPF 237
             I   S   N +   E+  S   +  +   P    + + GN  RRKG PHRAPF
Sbjct:   193 ISDESEQGNNSHKKEKKKSKKKKPESNYLPGMV-LSSLGN--RRKGAPHRAPF 242

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2101881 AT3G60670 [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 62/150 (41%), Positives = 88/150 (58%)

Query:     1 MEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVV 60
             ME  +  P WL+ +L+  +F  C+ H D  K+E N+ C+DC     C +CL +H  HR++
Sbjct:     1 MESGEF-PAWLEVLLKDKFFNACLDHEDDKKNEKNILCIDCC-LTICPHCLSSHTSHRLL 58

Query:    61 QIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRS 120
             QIRR  Y +V+RV +  K +D S +Q Y  NS+K+VF+NERPQ R  +G  N C  C RS
Sbjct:    59 QIRRYVYRDVLRVEDGSKLMDCSLIQPYTTNSSKVVFINERPQSRQFRGSGNICITCDRS 118

Query:   121 LLDSFRFCSLGCKLGAMKRGDLDLTFTLRV 150
             L   + FC L CK+  +      L+  LRV
Sbjct:   119 LQSPYLFCCLSCKISDVIMRQRGLSGFLRV 148

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_V0730 hypothetical protein (238 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	237
pfam04640	72	pfam04640, PLATZ, PLATZ transcription factor	8e-46

>gnl|CDD|191051 pfam04640, PLATZ, PLATZ transcription factor

 Score =  146 bits (371), Expect = 8e-46
 Identities = 57/72 (79%), Positives = 63/72 (87%)

Query: 63  RRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSLL 122
           RRSSYH+VVRV++IQK IDIS VQTY+INSAK+VFLNERPQ RPGKG  N CE C RSLL
Sbjct: 1   RRSSYHDVVRVSDIQKLIDISGVQTYVINSAKVVFLNERPQSRPGKGSGNICETCDRSLL 60

Query: 123 DSFRFCSLGCKL 134
           D FRFCSLGCK+
Sbjct: 61  DPFRFCSLGCKV 72

Plant AT-rich sequence and zinc-binding proteins (PLATZ) are zinc dependant DNA binding proteins. They bind to AT rich sequences and functions in transcriptional repression. Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	237
PF04640	72	PLATZ: PLATZ transcription factor; InterPro: IPR00	100.0
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	96.74
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	95.33
smart00336	42	BBOX B-Box-type zinc finger.	94.34
PF12855	43	Ecl1: Life-span regulatory factor; InterPro: IPR02	85.52
PF03884	57	DUF329: Domain of unknown function (DUF329); Inter	80.87

>PF04640 PLATZ: PLATZ transcription factor; InterPro: IPR006734 This family includes a conserved region in several uncharacterised plant proteins

Probab=100.00  E-value=1.1e-39  Score=244.83  Aligned_cols=72  Identities=67%  Similarity=1.146  Sum_probs=71.1

Q ss_pred             EeccccceeeechhhhhhcccceeeEEECCcEEEEeeCCCCCCCCCCCCCcccccccccCCCCeeeeecccc
Q 026515           63 RRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSLLDSFRFCSLGCKL  134 (237)
Q Consensus        63 RRssYhdVVRv~DIqkllD~S~IQtYvINsakVVFLn~RPq~r~~kg~~~~Ce~C~R~L~D~~rFCSL~CKv  134 (237)
                      |||||||||||.|||||||||+||||+|||+||||||+|||+++++++++.|++|+|+|+|+|+||||+|||
T Consensus         1 Rr~sY~dVVrv~di~kl~D~s~IQtY~iNs~kVVfLn~Rpq~~~~~~~~~~C~~C~R~L~d~~~fCSl~CKv   72 (72)
T PF04640_consen    1 RRYSYHDVVRVSDIQKLLDCSGIQTYVINSAKVVFLNPRPQSRPSKGSGNICETCHRSLQDPYRFCSLSCKV   72 (72)
T ss_pred             CcccccceEEHHHhHhhccccccEEEEeCCceEEEEccCCcCCCCCCCCCccCCCCCCCCCCCeEEeeeEEC
Confidence            799999999999999999999999999999999999999999999999999999999999999999999997

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.74  E-value=0.00062  Score=44.74  Aligned_cols=37  Identities=38%  Similarity=0.904  Sum_probs=29.8

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchhc-CCCCCceeEE
Q 026515           22 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI-NHKDHRVVQI   62 (237)
Q Consensus        22 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~HrvlQI   62 (237)
                      .|..|..   .+.++||.+|.. .+|..|.. .|++|.++.|
T Consensus         5 ~C~~H~~---~~~~~~C~~C~~-~~C~~C~~~~H~~H~~~~i   42 (42)
T PF00643_consen    5 KCPEHPE---EPLSLFCEDCNE-PLCSECTVSGHKGHKIVPI   42 (42)
T ss_dssp             B-SSTTT---SBEEEEETTTTE-EEEHHHHHTSTTTSEEEEC
T ss_pred             cCccCCc---cceEEEecCCCC-ccCccCCCCCCCCCEEeEC
Confidence            6888864   348899999998 89999977 4999988764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=95.33  E-value=0.012  Score=37.40  Aligned_cols=36  Identities=31%  Similarity=0.626  Sum_probs=28.0

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchhc-CCCCCceeE
Q 026515           22 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI-NHKDHRVVQ   61 (237)
Q Consensus        22 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~HrvlQ   61 (237)
                      .|+.|..   +...+||.+|.. .+|..|.. .|++|.++.
T Consensus         2 ~C~~H~~---~~~~~fC~~~~~-~iC~~C~~~~H~~H~~~~   38 (39)
T cd00021           2 LCDEHGE---EPLSLFCETDRA-LLCVDCDLSVHSGHRRVP   38 (39)
T ss_pred             CCCccCC---cceEEEeCccCh-hhhhhcChhhcCCCCEee
Confidence            5888843   246899999988 89999964 599987754

>smart00336 BBOX B-Box-type zinc finger

Probab=94.34  E-value=0.036  Score=35.68  Aligned_cols=35  Identities=37%  Similarity=0.868  Sum_probs=27.8

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchhc-CCCCCcee
Q 026515           22 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI-NHKDHRVV   60 (237)
Q Consensus        22 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~Hrvl   60 (237)
                      .|..|..   ....+||.+|.. .+|..|.. .|++|.++
T Consensus         5 ~C~~h~~---~~~~~~C~~c~~-~iC~~C~~~~H~~H~~~   40 (42)
T smart00336        5 KCDSHGD---EPAEFFCEECGA-LLCRTCDEAEHRGHTVV   40 (42)
T ss_pred             cCCCCCC---CceEEECCCCCc-ccccccChhhcCCCcee
Confidence            5888853   235899999997 89999976 59999765

>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]

Probab=85.52  E-value=0.19  Score=34.78  Aligned_cols=29  Identities=24%  Similarity=0.663  Sum_probs=24.5

Q ss_pred             CCccccccccc---CCCCeeeeeccccCeeec
Q 026515          111 TNTCEICCRSL---LDSFRFCSLGCKLGAMKR  139 (237)
Q Consensus       111 ~~~Ce~C~R~L---~D~~rFCSL~CKv~~~~~  139 (237)
                      .+.|.+|+|-+   .+...|||-.|++.....
T Consensus         6 ~~yC~~Cdk~~~~~~~~~lYCSe~Cr~~D~~~   37 (43)
T PF12855_consen    6 NDYCIVCDKQIDPPDDGSLYCSEECRLKDQEK   37 (43)
T ss_pred             hhHHHHhhccccCCCCCccccCHHHHhHhhhc
Confidence            46799999999   678999999999876543

Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.

>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc

Probab=80.87  E-value=0.21  Score=36.45  Aligned_cols=28  Identities=43%  Similarity=0.816  Sum_probs=17.2

Q ss_pred             CcccccccccCC----CCe-eeeeccccCeeec
Q 026515          112 NTCEICCRSLLD----SFR-FCSLGCKLGAMKR  139 (237)
Q Consensus       112 ~~Ce~C~R~L~D----~~r-FCSL~CKv~~~~~  139 (237)
                      ..|-+|++...-    +|+ |||-.||+..+.+
T Consensus         3 v~CP~C~k~~~~~~~n~~rPFCS~RCk~iDLg~   35 (57)
T PF03884_consen    3 VKCPICGKPVEWSPENPFRPFCSERCKLIDLGR   35 (57)
T ss_dssp             EE-TTT--EEE-SSSSS--SSSSHHHHHHHHS-
T ss_pred             ccCCCCCCeecccCCCCcCCcccHhhcccCHHH
Confidence            469999998865    564 9999999866654

YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	237
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	95.26
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	95.13
3ddt_A	48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	95.13
1fre_A	42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	93.8
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	93.72
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	92.14
2csv_A	72	Tripartite motif protein 29; ZF-B_BOX domain, TRIM	91.93
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	91.64
2egm_A	57	Tripartite motif-containing protein 41; ZF-B_BOX d	89.99
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	89.87
2w0t_A	43	Lethal(3)malignant brain tumor-like 2 protein; zin	84.79
2das_A	62	Zinc finger MYM-type protein 5; trash domain, stru	81.87

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=95.26  E-value=0.0084  Score=41.30  Aligned_cols=37  Identities=35%  Similarity=0.758  Sum_probs=29.5

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCceeEE
Q 026515           22 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQI   62 (237)
Q Consensus        22 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQI   62 (237)
                      .|..|..   ...++||.+|.. .+|..|..  .|++|+++-|
T Consensus        10 ~C~~H~~---e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l   48 (64)
T 2d8u_A           10 MCKEHED---EKINIYCLTCEV-PTCSMCKVFGIHKACEVAPL   48 (64)
T ss_dssp             CCSSCTT---CCCCSEESSSCC-CCCSHHHHSSSTTSSCEECT
T ss_pred             cCcCcCC---CccceEcCcCCc-eeCccccCCCcCCCCCeeCH
Confidence            6999954   247899999997 89999963  7999977654

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=95.13  E-value=0.0082  Score=39.71  Aligned_cols=37  Identities=32%  Similarity=0.665  Sum_probs=29.2

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchhc-CCCCCceeEE
Q 026515           22 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI-NHKDHRVVQI   62 (237)
Q Consensus        22 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~HrvlQI   62 (237)
                      .|..|..   ...++||.+|.. .+|..|.. .|++|+++.|
T Consensus         8 ~C~~H~~---e~l~lfC~~~~~-~iC~~C~~~~H~~H~~~~l   45 (50)
T 2yvr_A            8 YCNVHKH---EPLVLFCESCDT-LTCRDCQLNAHKDHQYQFL   45 (50)
T ss_dssp             BCSSSTT---CBCCEEETTTTE-EECHHHHHTTTTTCCEEET
T ss_pred             cCcCCCC---CCEEEEeCCCCE-EEecccCCCcCCCCceecH
Confidence            5999954   247899999987 89999964 7999877654

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A

Probab=95.13  E-value=0.011  Score=38.87  Aligned_cols=39  Identities=33%  Similarity=0.632  Sum_probs=30.5

Q ss_pred             CCCCccCCCCCCCCcceecccCCCccCCcchh--cCCCCCceeEE
Q 026515           20 FIPCVVHGDSNKSECNMFCLDCMGNAFCSYCL--INHKDHRVVQI   62 (237)
Q Consensus        20 F~~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~HrvlQI   62 (237)
                      ...|..|..   -..++||.+|.. .+|..|.  ..|++|+++.|
T Consensus         6 ~~~C~~H~~---e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l   46 (48)
T 3ddt_A            6 HPMCKEHED---EKINIYCLTCEV-PTCSMCKVFGIHKACEVAPL   46 (48)
T ss_dssp             SCBCSSSTT---SBCCEEETTTTE-EECHHHHHHSTTTTSCEEEC
T ss_pred             CCcCCCCCC---ccccEEcCCCCe-eEcccccCCCcCCCCcEEeC
Confidence            357999953   236799999987 8999996  37999988764

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1

Probab=93.80  E-value=0.037  Score=35.19  Aligned_cols=35  Identities=23%  Similarity=0.519  Sum_probs=28.4

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCceeE
Q 026515           22 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQ   61 (237)
Q Consensus        22 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQ   61 (237)
                      .|..|.    ....+||.+|.. .+|..|..  .|++|+++.
T Consensus         5 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~   41 (42)
T 1fre_A            5 KCSEHD----ERLKLYCKDDGT-LSCVICRDSLKHASHNFLP   41 (42)
T ss_dssp             CCCSSC----SSCCCCCCSSSS-SSCCTTSSCSSCTTCCCCC
T ss_pred             cchhhC----CeeeEEeCCCCe-EEeccCCCCCCCCCCcEec
Confidence            599995    247799999987 89999964  799998754

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=93.72  E-value=0.037  Score=36.94  Aligned_cols=36  Identities=33%  Similarity=0.729  Sum_probs=29.4

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCceeEE
Q 026515           22 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQI   62 (237)
Q Consensus        22 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQI   62 (237)
                      .|..|.    ....+||.+|.. .+|..|..  .|++|+++-|
T Consensus        10 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l   47 (53)
T 2did_A           10 LCPQHH----EALSLFCYEDQE-AVCLICAISHTHRAHTVVPL   47 (53)
T ss_dssp             BCTTTC----CBCCEEESSSCS-EECHHHHTSSTTTTSCEEEC
T ss_pred             cChhhC----CeeeEEeCCCCe-EEeccccCCCCCCCCcEeeH
Confidence            699995    247799999987 89999964  7999987665

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.14  E-value=0.084  Score=36.41  Aligned_cols=36  Identities=25%  Similarity=0.614  Sum_probs=29.7

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCceeEE
Q 026515           22 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQI   62 (237)
Q Consensus        22 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQI   62 (237)
                      .|..|..    ...+||.+|.. .+|..|..  .|++|+++.|
T Consensus        16 ~C~~H~e----~L~lfC~~d~~-~iC~~C~~s~eH~~H~~~~l   53 (59)
T 2yrg_A           16 HCARHGE----KLLLFCQEDGK-VICWLCERSQEHRGHHTFPT   53 (59)
T ss_dssp             BCTTTCC----BCCEEETTTCS-EECHHHHTSTTTTTCCEEEC
T ss_pred             cChhhCc----eeeeecCCCCc-EEecccCCCCcCCCCcEeeH
Confidence            6999953    47799999987 89999964  7999988765

>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=91.93  E-value=0.069  Score=37.75  Aligned_cols=36  Identities=33%  Similarity=0.838  Sum_probs=28.9

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchhc-CCCCCceeEE
Q 026515           22 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI-NHKDHRVVQI   62 (237)
Q Consensus        22 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~HrvlQI   62 (237)
                      .|..|.    ....+||.+|.. .+|..|.. .|++|+++-|
T Consensus        20 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~H~~H~~~~l   56 (72)
T 2csv_A           20 KCPVHG----KTMELFCQTDQT-CICYLCMFQEHKNHSTVTV   56 (72)
T ss_dssp             BCTTTC----CBCCEEESSSCC-EECHHHHHTTTSSSCEEEH
T ss_pred             cCcccC----CceEEEeCCCCe-EEccccCCCCCCCCCEecH
Confidence            799994    247799999987 89999965 7988876654

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=91.64  E-value=0.06  Score=38.83  Aligned_cols=38  Identities=29%  Similarity=0.804  Sum_probs=30.1

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCceeEEE
Q 026515           22 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQIR   63 (237)
Q Consensus        22 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQIR   63 (237)
                      .|..|..   -..++||.+|.. .+|..|..  .|++|+++-|-
T Consensus        20 ~C~~H~~---e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l~   59 (84)
T 2dja_A           20 TCLDHEN---EKVNMYCVSDDQ-LICALCKLVGRHRDHQVASLN   59 (84)
T ss_dssp             CCSSCSS---SCCCEEETTTTE-EECHHHHHTSTTTTCCBCCCC
T ss_pred             cCcCcCC---ccccEEcCCCCc-eEcccCcCCCCCCCCCccCHH
Confidence            6999943   237799999987 89999964  79999876653

>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.99  E-value=0.053  Score=37.27  Aligned_cols=35  Identities=34%  Similarity=0.594  Sum_probs=28.5

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCceeE
Q 026515           22 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQ   61 (237)
Q Consensus        22 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQ   61 (237)
                      .|..|.    ....+||.+|.. .+|..|..  .|++|+++.
T Consensus        20 ~C~~H~----e~L~lfC~~d~~-~iC~~C~~~~eH~~H~~~~   56 (57)
T 2egm_A           20 ICPKHQ----EALKLFCEVDEE-AICVVCRESRSHKQHSVVP   56 (57)
T ss_dssp             BCTTTC----CBCCEEETTTTE-EECHHHHHSHHHHSSCEEC
T ss_pred             cChhhC----ceeeEEcCCCCc-EEecccCCCCCCCCCcEec
Confidence            599994    247799999987 89999964  799998764

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=89.87  E-value=0.11  Score=38.35  Aligned_cols=38  Identities=32%  Similarity=0.763  Sum_probs=29.7

Q ss_pred             CCCccCCCCCCCCcceecccCCCccCCcchh--cCCCCCceeEE
Q 026515           21 IPCVVHGDSNKSECNMFCLDCMGNAFCSYCL--INHKDHRVVQI   62 (237)
Q Consensus        21 ~~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~HrvlQI   62 (237)
                      ..|..|..   ...++||.+|.. .+|..|.  ..|++|+++.|
T Consensus        60 ~~C~~H~~---e~l~~fC~~~~~-~iC~~C~~~~~H~~H~~~~l   99 (101)
T 2jun_A           60 LMCLEHED---EKVNMYCVTDDQ-LICALCKLVGRHRDHQVAAL   99 (101)
T ss_dssp             CCCSSCSS---SCCCEEETTTTE-EECHHHHHHTTTSSSCBCCC
T ss_pred             CcCcCcCC---CcceEECCCCCC-ccchhcCCCCCcCCCCeecC
Confidence            36999953   237899999987 8999996  48999987543

>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}

Probab=84.79  E-value=0.16  Score=34.30  Aligned_cols=25  Identities=32%  Similarity=0.781  Sum_probs=18.4

Q ss_pred             CCCCcccccccc-cCC-----CCeeeeeccc
Q 026515          109 GVTNTCEICCRS-LLD-----SFRFCSLGCK  133 (237)
Q Consensus       109 g~~~~Ce~C~R~-L~D-----~~rFCSL~CK  133 (237)
                      +....||.|++. +..     +-||||++|-
T Consensus         4 ~~~~~CE~CG~~g~~~~F~~ksKRFCS~~Ca   34 (43)
T 2w0t_A            4 SEPAVCEMCGIVGTREAFFSKTKRFCSVSCS   34 (43)
T ss_dssp             CCEEECTTTCCEEETTTSCTTTSSSSSHHHH
T ss_pred             CceehhhhhcCcchhhhhccCCcceechhhh
Confidence            445689999984 333     4599999994

>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17

Probab=81.87  E-value=0.74  Score=33.30  Aligned_cols=31  Identities=29%  Similarity=0.508  Sum_probs=25.1

Q ss_pred             CCCCCCCCCcccccccccCC----------CCeeeeecccc
Q 026515          104 PRPGKGVTNTCEICCRSLLD----------SFRFCSLGCKL  134 (237)
Q Consensus       104 ~r~~kg~~~~Ce~C~R~L~D----------~~rFCSL~CKv  134 (237)
                      .++.+...-+|+.|.+.|+.          +-.|||..|-.
T Consensus        13 q~~~~~~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~   53 (62)
T 2das_A           13 QQLTKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLS   53 (62)
T ss_dssp             CCCSSCSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHH
T ss_pred             cCCCCccccChhhccchhhcCceeeeecCchhheechHHHc
Confidence            55667788899999999973          35899999953

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	237
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	96.2
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	95.91
d2csva1	59	Tripartite motif-containing protein 29 {Human (Hom	95.9
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	95.76
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	95.76
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	94.47

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.001  Score=43.81  Aligned_cols=37  Identities=35%  Similarity=0.758  Sum_probs=29.3

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCceeEE
Q 026515           22 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQI   62 (237)
Q Consensus        22 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQI   62 (237)
                      .|+.|.+   ...++||.+|.. .+|..|..  .|++|.+.-|
T Consensus         3 ~C~~H~~---e~l~~yC~~c~~-~iC~~C~~~~~Hk~H~v~~l   41 (51)
T d2d8ua1           3 MCKEHED---EKINIYCLTCEV-PTCSMCKVFGIHKACEVAPL   41 (51)
T ss_dssp             CCSSCTT---CCCCSEESSSCC-CCCSHHHHSSSTTSSCEECT
T ss_pred             CCcccCc---CcceEEcCCCCc-eECccccCcCCcCcCcCcCH
Confidence            5888964   247899999997 89999953  7999977554

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=95.91  E-value=0.0026  Score=40.02  Aligned_cols=34  Identities=24%  Similarity=0.560  Sum_probs=28.2

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCcee
Q 026515           22 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVV   60 (237)
Q Consensus        22 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~Hrvl   60 (237)
                      .|+.|..    ..++||.+|.. .+|..|..  .|++|.++
T Consensus         2 ~C~~H~e----~l~lfC~~d~~-~iC~~C~~~~~H~~H~v~   37 (39)
T d1frea_           2 KCSEHDE----RLKLYCKDDGT-LSCVICRDSLKHASHNFL   37 (39)
T ss_dssp             CCCSSCS----SCCCCCCSSSS-SSCCTTSSCSSCTTCCCC
T ss_pred             CCcccCc----ceeEEcccCCc-EeeccCcCCCCcCCCcEe
Confidence            6999943    47899999987 89999954  69999875

>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 29
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0015  Score=44.10  Aligned_cols=36  Identities=33%  Similarity=0.841  Sum_probs=29.7

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchhc-CCCCCceeEE
Q 026515           22 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI-NHKDHRVVQI   62 (237)
Q Consensus        22 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~HrvlQI   62 (237)
                      .|..|..    ...+||.+|.. .+|..|+. .|++|.++.|
T Consensus        13 ~C~~H~e----~l~lyC~~c~~-~iC~~C~~~~H~~H~~~~l   49 (59)
T d2csva1          13 KCPVHGK----TMELFCQTDQT-CICYLCMFQEHKNHSTVTV   49 (59)
T ss_dssp             BCTTTCC----BCCEEESSSCC-EECHHHHHTTTSSSCEEEH
T ss_pred             chhhhCC----ccceECCCCCc-eECcccCcccCCCCCeeCH
Confidence            6999932    47799999997 89999976 7999977655

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.0014  Score=45.07  Aligned_cols=38  Identities=29%  Similarity=0.804  Sum_probs=30.1

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCceeEEE
Q 026515           22 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQIR   63 (237)
Q Consensus        22 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQIR   63 (237)
                      .|+.|.+   ...++||.+|.. .+|..|..  .|++|.+.-|.
T Consensus        13 ~C~~H~~---e~l~~fC~~C~~-~iC~~C~~~~~Hk~H~~~~i~   52 (71)
T d2djaa1          13 TCLDHEN---EKVNMYCVSDDQ-LICALCKLVGRHRDHQVASLN   52 (71)
T ss_dssp             CCSSCSS---SCCCEEETTTTE-EECHHHHHTSTTTTCCBCCCC
T ss_pred             cCcccCC---ccceeEcCCCCc-eeccccccCCCCCCCcCcCHH
Confidence            5999964   136899999987 89999953  69999887664

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.00086  Score=43.63  Aligned_cols=36  Identities=33%  Similarity=0.824  Sum_probs=28.7

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchh-c-CCCCCceeE
Q 026515           22 PCVVHGDSNKSECNMFCLDCMGNAFCSYCL-I-NHKDHRVVQ   61 (237)
Q Consensus        22 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl-~-~H~~HrvlQ   61 (237)
                      .|+.|.+   .+.++||.+|.. ++|..|. . .|++|.+.-
T Consensus         7 ~C~~H~~---e~l~~yC~~C~~-~iC~~C~~~~~H~~H~~~~   44 (47)
T d2dq5a1           7 MCLEHED---EKVNMYCVTDDQ-LICALCKLVGRHRDHQVAA   44 (47)
T ss_dssp             BCSSCTT---SBEEEEETTTTE-EEEHHHHHTSSTTSSCCCC
T ss_pred             cchhhCC---CcceEEcCCCCc-cCCccCcCcCCcCCCeEee
Confidence            4999964   246899999997 8999994 3 799997653

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.47  E-value=0.011  Score=37.21  Aligned_cols=34  Identities=35%  Similarity=0.770  Sum_probs=28.3

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCcee
Q 026515           22 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVV   60 (237)
Q Consensus        22 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~Hrvl   60 (237)
                      .|+.|..    ..++||.+|.. .+|..|..  .|++|+++
T Consensus         3 ~C~~H~e----~l~lfC~~d~~-~iC~~C~~~~~H~~H~v~   38 (40)
T d2dida1           3 LCPQHHE----ALSLFCYEDQE-AVCLICAISHTHRAHTVV   38 (40)
T ss_dssp             BCTTTCC----BCCEEESSSCS-EECHHHHTSSTTTTSCEE
T ss_pred             cchhhCc----cceEEcccCCc-EeeccCcCCCCcCCCcEe
Confidence            5889943    47899999987 89999964  79999886