Citrus Sinensis ID: 026516

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
Protein Sequence
MKIEGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQPLYSKRQKLQKMNFSDKTDISASILSNGSQDSPDKQAAQSPVASKVANRVIPAHRRF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccEEEEEEccccccEEEEEEEccccHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccccccccccccccHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHccccccccccccccccccccccEEEEEEccccccEEEEEEcccccHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHcccccEEEEEccccccccccHHEEEEEHcccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccccccccHHHccccccccccccEEccccccc
Coil and Loop (DISEMBL)
mkiegfepifgepkaewadsrsDSLGRFLfhvsapdsshlliqvTDFRSNTWEAKRSVLQLDdmrdeigiggsWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKskgmprisisltrlTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERneniqnqplyskrqklqkmnfsdktdisasilsngsqdspdkqaaqspvaskvanrvipahrrf
Flexible Loop (DISEMBL)
mkiegfepifgepkaewADSRSDSLGRFLFHVsapdsshlliqVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAqkskgmprISISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAekerneniqnqplyskrqKLQKMNFSDKTDISASILSngsqdspdkqaaqspvaskvanrvipahrrf
Low Complexity Region (SEG)
MKIEGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLekeaaaekeRNENIQNQPLYSKRQKLQKMNFSDKTDISASILSNGSQDSPDKQAAQSPVASKVANRVIPAHRRF
Disordered region (IsUnstruct)
************************LGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCL****************************************************************************
Disordered Region (DISOPRED)
****GFE*IFG**************GRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISISLTRLTGSAATEAMAKLSLELFTAFRSMQ********************************************************************************IPA****
Disordered Region (DISEMBL)
MKIEGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQPLYSKRQKLQKMNFSDKTDISASIL*******************KVANRVIPAHRRF
Disordered Region (DISPRO)
*********FGEPKA******SDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERN***********R***************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKIEGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISISLTRLTGSAATEAMAKLSLELFTAFRSMQTLxxxxxxxxxxxxxxxxxxxxxxxxxxxxPLYSKRQKLQKMNFSDKTDISASILSNGSQDSPDKQAAQSPVASKVANRVIPAHRRF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
224083464	297	predicted protein [Populus trichocarpa]	0.966	0.771	0.507	2e-68
388519441	240	unknown [Lotus japonicus]	0.945	0.933	0.555	4e-67
357519993	243	hypothetical protein MTR_8g093850 [Medic	0.962	0.938	0.563	2e-66
449459256	240	PREDICTED: uncharacterized protein LOC10	0.932	0.920	0.516	8e-62
296082599	169	unnamed protein product [Vitis vinifera]	0.632	0.887	0.647	1e-49
351723845	229	uncharacterized protein LOC100305573 [Gl	0.940	0.973	0.466	2e-49
297797403	236	hypothetical protein ARALYDRAFT_496595 [	0.915	0.919	0.474	2e-46
79547434	236	uncharacterized protein [Arabidopsis tha	0.915	0.919	0.474	6e-46
27754430	236	unknown protein [Arabidopsis thaliana] g	0.915	0.919	0.474	6e-46
8777314	245	unnamed protein product [Arabidopsis tha	0.953	0.922	0.457	1e-44

>gi|224083464|ref|XP_002307037.1| predicted protein [Populus trichocarpa] gi|222856486|gb|EEE94033.1| predicted protein [Populus trichocarpa]

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 140/276 (50%), Positives = 180/276 (65%), Gaps = 47/276 (17%)

Query: 6   FEPIFGEPKAEWADSRSDSLG---RFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLD 62
           FEPIF EP+  WA + +   G   +FL H+ APD +HL IQVTD+ SNT+EA +SV+QLD
Sbjct: 7   FEPIFNEPRIGWAKNSNPGSGLMDQFLMHIFAPDDNHLKIQVTDYHSNTFEAVKSVMQLD 66

Query: 63  DMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISIS 122
           DMRD IGIGGSW+EF++Y+VAS K+EDVKL+LE  S++DG AYAK+VAQKSKGMP ISIS
Sbjct: 67  DMRDCIGIGGSWAEFVEYLVASFKAEDVKLVLEKLSDSDGVAYAKLVAQKSKGMPLISIS 126

Query: 123 LTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQPL 182
           LT+L  +AA +AMA +S  LF AF+  + L++QE+E  LQL K  +AEKER+ENIQ+Q  
Sbjct: 127 LTKLLDNAARDAMANMSFGLFKAFKRTKNLVLQEKEHSLQLTKVISAEKERSENIQSQ-- 184

Query: 183 YSKRQKLQKMNFSDKTDISASILSNGSQDSP----------------------------- 213
             KRQKL+KMN SD+ D+S    SNG+Q+SP                             
Sbjct: 185 LGKRQKLEKMNSSDRLDVSGPPASNGAQNSPGCVLSLGGFQIICKLSASIYITECDDTVS 244

Query: 214 -------------DKQAAQSPVASKVANRVIPAHRR 236
                        DK A + P ++KV NRV+PA RR
Sbjct: 245 SINKIFLNQIIDADKLAGRDPASTKVTNRVVPAFRR 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519441|gb|AFK47782.1| unknown [Lotus japonicus]

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 131/236 (55%), Positives = 171/236 (72%), Gaps = 12/236 (5%)

Query: 1   MKIEGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQ 60
           M  E FEPIFGEPK EWA   S  L  FLFH +APDSSH+++ VTDF S+TWEA+ SV  
Sbjct: 1   MAFEDFEPIFGEPKVEWAAHSSCPLRPFLFHATAPDSSHIVVCVTDFHSDTWEARLSVSF 60

Query: 61  LDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRIS 120
           L+D+RD IGIGGSW+EF++Y V S+KSED+KL+LE +SN+DG ++AK+VAQKSKGMP I+
Sbjct: 61  LEDIRDIIGIGGSWAEFVEYFVTSLKSEDLKLVLEANSNSDGVSHAKLVAQKSKGMPLIT 120

Query: 121 ISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQ 180
           I LT+L  SA  EAM+ LSL LF AF+++   +V+EQER + L    AAEK +NE +Q +
Sbjct: 121 IPLTKLLDSAVNEAMSNLSLNLFRAFKNITCSLVKEQERSVWLTNMIAAEKAKNETLQTE 180

Query: 181 PLYSKRQKLQKMNFSDKTDISASILSNGSQDSPDKQAAQSPVASKVANRVIPAHRR 236
                 QK QK++ S+K  +S    +NG + SPDKQAA+    +KV NRV+P HRR
Sbjct: 181 -----YQKFQKISDSEKAGVS----TNGLKKSPDKQAARD---TKVKNRVVPVHRR 224

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519993|ref|XP_003630285.1| hypothetical protein MTR_8g093850 [Medicago truncatula] gi|355524307|gb|AET04761.1| hypothetical protein MTR_8g093850 [Medicago truncatula]

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 133/236 (56%), Positives = 170/236 (72%), Gaps = 8/236 (3%)

Query: 1   MKIEGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQ 60
           M  + FEPIF EPK EW    S  L  FLFHV  P+SSHL+I VT+F S+TWEA  SV  
Sbjct: 1   MAFQDFEPIFAEPKLEWKPHCSHPLRPFLFHVHPPNSSHLVIHVTNFHSDTWEAHLSVSS 60

Query: 61  LDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRIS 120
           L+D+ D IGIGGSWSEF +Y V S+KSED+KL+LE +SN+DG + AK++AQKSKGMP I+
Sbjct: 61  LEDIMDIIGIGGSWSEFANYFVNSLKSEDLKLVLEPNSNSDGVSSAKLIAQKSKGMPLIT 120

Query: 121 ISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQ 180
           I LT+L  S+A+EA++ LSL LF AFRS +  +V  QER +QL    A+EKERNE I   
Sbjct: 121 IPLTKLVDSSASEAVSNLSLSLFKAFRSTKCSLVDVQERSVQLTNMMASEKERNETI--- 177

Query: 181 PLYSKRQKLQKMNFSDKTDISASILSNGSQDSPDKQAAQSPVASKVANRVIPAHRR 236
           PL  +RQK QK++ S+K  +S    +NG+Q+SPDKQ A+    +KV NRV+PAHRR
Sbjct: 178 PL-DRRQKFQKISDSEKAGVS----NNGAQNSPDKQKARDTGTTKVKNRVMPAHRR 228

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459256|ref|XP_004147362.1| PREDICTED: uncharacterized protein LOC101217609 [Cucumis sativus] gi|449526088|ref|XP_004170046.1| PREDICTED: uncharacterized protein LOC101231777 [Cucumis sativus]

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 123/238 (51%), Positives = 160/238 (67%), Gaps = 17/238 (7%)

Query: 1   MKIEGFEPIFGEP-KAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVL 59
           M+++ F PIFG+P + EW +  S SL +FLFHV +P+ SHL   VTDF SNTWE+ +S  
Sbjct: 1   MELQDFAPIFGKPTRVEWVNRGSLSLLQFLFHVYSPNPSHLRFLVTDFHSNTWESTKSAF 60

Query: 60  QLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRI 119
           QL+DMRD+IGIGG++SEF+DY+VAS+K  DV+L +EG S  DGAA  K++AQKSKGMP  
Sbjct: 61  QLEDMRDDIGIGGAFSEFVDYIVASMKFGDVRLCMEGQSGKDGAASVKLIAQKSKGMPVF 120

Query: 120 SISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQN 179
           SISLT+L  SAA EAMA +SL LF + +  +  +++EQE  LQL    + EKE+NENIQ 
Sbjct: 121 SISLTKLVDSAAAEAMATMSLGLFNSLKEKECSLMKEQEHSLQLTTMISTEKEKNENIQT 180

Query: 180 Q-PLYSKRQKLQKMNFSDKTDISASILSNGSQDSPDKQAAQSPVASKVANRVIPAHRR 236
           Q   Y K+QKLQ MN S               +SPDK    +   +K  NRV+P HRR
Sbjct: 181 QLGQYRKKQKLQNMNAS---------------NSPDKSGVHNIGLTKATNRVVPVHRR 223

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082599|emb|CBI21604.3| unnamed protein product [Vitis vinifera]

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 101/156 (64%), Positives = 121/156 (77%), Gaps = 6/156 (3%)

Query: 1   MKIEGFEPIFGEPKAEWAD-SRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVL 59
           M  E FE IFGE K EWA+ SR     RFLFH  A D S L I+VTDF S+TWEA RSV 
Sbjct: 1   MGFEDFEAIFGEAKPEWANESR-----RFLFHFDAIDPSRLRIRVTDFHSSTWEAVRSVE 55

Query: 60  QLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRI 119
           QL+DMRD +GIGGSWSEF+DYV+ASIKSEDVKL+LE ++ +DGAAYAK+VAQKSKGMP I
Sbjct: 56  QLEDMRDTVGIGGSWSEFVDYVIASIKSEDVKLVLEENAKSDGAAYAKLVAQKSKGMPLI 115

Query: 120 SISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQ 155
             SL +L  SAA+EAM  LSLELF ++++MQ L ++
Sbjct: 116 CFSLAKLENSAASEAMMNLSLELFKSYKNMQNLFIK 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723845|ref|NP_001237293.1| uncharacterized protein LOC100305573 [Glycine max] gi|255625951|gb|ACU13320.1| unknown [Glycine max]

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 113/242 (46%), Positives = 149/242 (61%), Gaps = 19/242 (7%)

Query: 1   MKIEGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQ 60
           M  E F+PIF +PK +W      S   F  H  APDSSHL+I VT+   + WE + S+  
Sbjct: 1   MAFEDFDPIFSKPKVKWDSESCSSSCPFFLHAYAPDSSHLVIHVTNIY-DAWETRLSLSM 59

Query: 61  LDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRIS 120
           L+D+RD +GIGGSWS+F DY + S+KS+D+KL+LE  SN+DG ++ K+VAQKSKGMP I+
Sbjct: 60  LEDIRDIVGIGGSWSDFADYFLTSLKSQDLKLVLEPDSNSDGVSHVKLVAQKSKGMPLIT 119

Query: 121 ISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEA-----AAEKERNE 175
           I  T+L  SAA E        LF AF    T    E+ER    E  A     AAEKERNE
Sbjct: 120 IPPTKLMDSAAMEVKLNFCSSLFEAFEIKSTECSLEKER----EHSARTNMLAAEKERNE 175

Query: 176 NIQNQPLYSKRQKLQKMNFSDKTDISASILSNGSQDSPDKQAAQSPVASKVANRVIPAHR 235
            IQ      +RQK QK++ S+       + ++G Q+SPDKQAA+   A+KV NR +PA+R
Sbjct: 176 AIQ----LEQRQKFQKISNSEN-----GVSTDGLQNSPDKQAARDTGATKVKNRKVPAYR 226

Query: 236 RF 237
           R 
Sbjct: 227 RL 228

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797403|ref|XP_002866586.1| hypothetical protein ARALYDRAFT_496595 [Arabidopsis lyrata subsp. lyrata] gi|297312421|gb|EFH42845.1| hypothetical protein ARALYDRAFT_496595 [Arabidopsis lyrata subsp. lyrata]

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 111/234 (47%), Positives = 144/234 (61%), Gaps = 17/234 (7%)

Query: 3   IEGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLD 62
            E FEPIFGE   E +D  S  L R LFHV A DS +L + VTDF S  W    SV QLD
Sbjct: 4   FEKFEPIFGEVVPEHSDPGSGLLRRCLFHVYASDSYNLTVHVTDFVSGVWATILSVSQLD 63

Query: 63  DMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISIS 122
           DMRD +GIGGSWSEF+DY VAS+KS++VKL+L  +S ++G   A++V+QK+KGMPR+ + 
Sbjct: 64  DMRDTVGIGGSWSEFLDYTVASMKSDNVKLLLGDNSVSNGVKTARLVSQKAKGMPRVIVP 123

Query: 123 LTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQPL 182
           LT++  S+A+EAMA LSLELF AF+S Q L     +  +     A  EK++ +   N   
Sbjct: 124 LTKMVDSSASEAMANLSLELFRAFKSKQHL-----QGEVSSSAAATDEKDKRDATHN--- 175

Query: 183 YSKRQKLQKMNFSDKTDISASILSNGSQDSPDKQAAQSPVASKVANRVIPAHRR 236
                  Q   +S K D+ A    N  QDSP KQ+A+    +K   RV PAHRR
Sbjct: 176 -------QVERYSGKLDVMAPSTDN-RQDSPAKQSAREGYTTKPVKRV-PAHRR 220

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79547434|ref|NP_201206.3| uncharacterized protein [Arabidopsis thaliana] gi|332010446|gb|AED97829.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 111/234 (47%), Positives = 145/234 (61%), Gaps = 17/234 (7%)

Query: 3   IEGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLD 62
            E FEPIFGE   E +D  S  L R LFHV A DS +L + VTDF S  W    SV QLD
Sbjct: 4   FEKFEPIFGEVVPERSDPGSGLLRRCLFHVYASDSYNLTVHVTDFISGVWTTILSVSQLD 63

Query: 63  DMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISIS 122
           DMRD +GIGGSWSEF+DY VAS+KS++VKL+L   S ++G   A++V+QK+KGMPRI++ 
Sbjct: 64  DMRDTVGIGGSWSEFVDYTVASLKSDNVKLLLGETSVSNGVKTARLVSQKAKGMPRINVP 123

Query: 123 LTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQPL 182
           LT++  S+A+EAMA LSLELF AF+S Q L     +  +     A  EK++ +   NQ  
Sbjct: 124 LTKMVESSASEAMANLSLELFRAFKSKQHL-----QGEVSFSAAATDEKDKRDATYNQ-- 176

Query: 183 YSKRQKLQKMNFSDKTDISASILSNGSQDSPDKQAAQSPVASKVANRVIPAHRR 236
                 L++  +S K D+ A   +N  QDSP  Q+A+         RV PAHRR
Sbjct: 177 ------LER--YSRKLDVMAPS-TNNRQDSPANQSAREANTKNPVKRV-PAHRR 220

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27754430|gb|AAO22663.1| unknown protein [Arabidopsis thaliana] gi|50253576|gb|AAT71990.1| At1g12020 [Arabidopsis thaliana]

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 111/234 (47%), Positives = 145/234 (61%), Gaps = 17/234 (7%)

Query: 3   IEGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLD 62
            E FEPIFGE   E +D  S  L R LFHV A DS +L + VTDF S  W    SV QLD
Sbjct: 4   FEKFEPIFGEVVPERSDPGSGLLRRCLFHVYASDSYNLTVHVTDFISGVWTTILSVSQLD 63

Query: 63  DMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISIS 122
           DMRD +GIGGSWSEF+DY VAS+KS++VKL+L   S ++G   A++V+QK+KGMPRI++ 
Sbjct: 64  DMRDTVGIGGSWSEFVDYTVASLKSDNVKLLLGETSVSNGVKTARLVSQKAKGMPRINVP 123

Query: 123 LTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQPL 182
           LT++  S+A+EAMA LSLELF AF+S Q L     +  +     A  EK++ +   NQ  
Sbjct: 124 LTKMVESSASEAMANLSLELFRAFKSKQHL-----QGEVSFSAAATDEKDKRDATYNQ-- 176

Query: 183 YSKRQKLQKMNFSDKTDISASILSNGSQDSPDKQAAQSPVASKVANRVIPAHRR 236
                 L++  +S K D+ A   +N  QDSP  Q+A+         RV PAHRR
Sbjct: 177 ------LER--YSRKLDVMAPS-TNNRQDSPANQSAREANTKNPVKRV-PAHRR 220

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8777314|dbj|BAA96904.1| unnamed protein product [Arabidopsis thaliana]

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/234 (45%), Positives = 142/234 (60%), Gaps = 8/234 (3%)

Query: 3   IEGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLD 62
            E FEPIFGE   E +D  S  L R LFHV A DS +L + VTDF S  W    SV QLD
Sbjct: 4   FEKFEPIFGEVVPERSDPGSGLLRRCLFHVYASDSYNLTVHVTDFISGVWTTILSVSQLD 63

Query: 63  DMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISIS 122
           DMRD +GIGGSWSEF+DY VAS+KS++VKL+L   S ++G   A++V+QK+KGMPRI++ 
Sbjct: 64  DMRDTVGIGGSWSEFVDYTVASLKSDNVKLLLGETSVSNGVKTARLVSQKAKGMPRINVP 123

Query: 123 LTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQPL 182
           LT++  S+A+EAMA LSLELF AF+S Q L V      +         +   +  +    
Sbjct: 124 LTKMVESSASEAMANLSLELFRAFKSKQHLQVLNTA-AIVCSYSGGKSRLYCDQDKRDAT 182

Query: 183 YSKRQKLQKMNFSDKTDISASILSNGSQDSPDKQAAQSPVASKVANRVIPAHRR 236
           Y++ ++     +S K D+ A   +N  QDSP  Q+A+         RV PAHRR
Sbjct: 183 YNQLER-----YSRKLDVMAPS-TNNRQDSPANQSAREANTKNPVKRV-PAHRR 229

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
TAIR|locus:2160786	236	AT5G64010 "AT5G64010" [Arabido	0.890	0.894	0.453	1.6e-40

TAIR|locus:2160786 AT5G64010 "AT5G64010" [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 103/227 (45%), Positives = 137/227 (60%)

Query:     4 EGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLDD 63
             E FEPIFGE   E +D  S  L R LFHV A DS +L + VTDF S  W    SV QLDD
Sbjct:     5 EKFEPIFGEVVPERSDPGSGLLRRCLFHVYASDSYNLTVHVTDFISGVWTTILSVSQLDD 64

Query:    64 MRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISISL 123
             MRD +GIGGSWSEF+DY VAS+KS++VKL+L   S ++G   A++V+QK+KGMPRI++ L
Sbjct:    65 MRDTVGIGGSWSEFVDYTVASLKSDNVKLLLGETSVSNGVKTARLVSQKAKGMPRINVPL 124

Query:   124 TRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLXXXXXXXXXRNENIQNQPLY 183
             T++  S+A+EAMA LSLELF AF+S Q L  Q +                +E  +    Y
Sbjct:   125 TKMVESSASEAMANLSLELFRAFKSKQHL--QGE--------VSFSAAATDEKDKRDATY 174

Query:   184 SKRQKLQKMNFSDKTDISASILSNGSQDSPDKQAAQSPVASKVANRV 230
             ++ ++     +S K D+ A   +N  QDSP  Q+A+         RV
Sbjct:   175 NQLER-----YSRKLDVMAPS-TNNRQDSPANQSAREANTKNPVKRV 215


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.129   0.358    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      237       228   0.00081  113 3  11 22  0.42    33
                                                     32  0.41    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  169 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.22u 0.09s 19.31t   Elapsed:  00:00:00
  Total cpu time:  19.22u 0.09s 19.31t   Elapsed:  00:00:00
  Start:  Fri May 10 17:15:08 2013   End:  Fri May 10 17:15:08 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009414 "response to water deprivation" evidence=IMP

GO:0090332 "stomatal closure" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_V0052 hypothetical protein (297 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	237
PF15384	197	DUF4610: Domain of unknown function (DUF4610)	97.06
PF06632	342	XRCC4: DNA double-strand break repair and V(D)J re	94.96

>PF15384 DUF4610: Domain of unknown function (DUF4610)

Probab=97.06  E-value=0.0076  Score=53.62  Aligned_cols=110  Identities=17%  Similarity=0.281  Sum_probs=94.6

Q ss_pred             cceEEEEeCC-----CCCCeEEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhcccccceEeecCCCCC
Q 026516           26 GRFLFHVSAP-----DSSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNA  100 (237)
Q Consensus        26 ~pfLFh~~a~-----ds~hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~aslsS~~VkL~L~~~s~s  100 (237)
                      -+|+++-+-.     +.+...|+|||--. -|...|+-++|+.+|+-.|.- +..||..-|.+.+..+.|.|-|-.+   
T Consensus        13 ~ryvCyce~~~~~~~~~g~~~i~vTDg~d-vW~t~~t~dsL~~~k~~~~L~-~~Edy~~rfR~Ac~~~~vtvtlqed---   87 (197)
T PF15384_consen   13 PRYVCYCEGEGSGDGDAGVWNIYVTDGAD-VWSTCFTPDSLAALKARFGLS-SAEDYFSRFRAACEQQAVTVTLQED---   87 (197)
T ss_pred             CcEEEEEeCCCCCCCCCCeeEEEecccHH-hhhhccCHHHHHHHHhhcccc-hHHHHHHHHHHHhhcCeeEEEEecC---
Confidence            3588888877     78889999999874 499999999999999999984 6889999999999999999999863   


Q ss_pred             CCcccceeeeeccCCCceeEEecccccchhHHHHHHHhhHHHHHHH
Q 026516          101 DGAAYAKIVAQKSKGMPRISISLTRLTGSAATEAMAKLSLELFTAF  146 (237)
Q Consensus       101 ~G~~~akLVAqKaKGmP~ItI~L~kl~~saa~D~manlsl~Lf~af  146 (237)
                            +++-+-++|-.-|++.|.++.+..+...+-.|-+.|.+..
T Consensus        88 ------~a~Ltls~g~s~L~~dL~k~p~~Ea~~~Lq~L~f~lAe~v  127 (197)
T PF15384_consen   88 ------RASLTLSGGPSALTFDLSKVPAPEAAPRLQALTFRLAERV  127 (197)
T ss_pred             ------eEEEEecCCCccceEEhhhCCCchhhHHHHHHHHHHHHHH
Confidence                  4445568999999999999999999888888877776555

>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants

Probab=94.96  E-value=0.53  Score=44.62  Aligned_cols=138  Identities=14%  Similarity=0.209  Sum_probs=82.8

Q ss_pred             cceEEEEeCCCC--CCeEEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhccccc-----ceEeecCCC
Q 026516           26 GRFLFHVSAPDS--SHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSED-----VKLILEGHS   98 (237)
Q Consensus        26 ~pfLFh~~a~ds--~hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~aslsS~~-----VkL~L~~~s   98 (237)
                      ..++.++.-...  +|+.|.+||-|+ +|.+..|-.++....++.  ++++.+|++-+.-.|-.++     -.+.+-.  
T Consensus        16 ~~yfL~~~W~~~~~~~F~i~lTDG~s-aW~g~vs~~ei~~~A~~~--~~~~~eYv~~l~kaL~~~~~~~~~y~f~~~~--   90 (342)
T PF06632_consen   16 SIYFLQVSWEKDLGSGFDITLTDGQS-AWSGTVSEEEIRQRAKDW--DMEVEEYVQELKKALTGQQQPSSEYSFDLTE--   90 (342)
T ss_dssp             SEEEEEEEESSSGGGEEEEEEESSSS-EEEEEEEHHHHHHHHHHT--TS-HHHHHHHHHHHHTSSSSSSSEEEEEE----
T ss_pred             ceEEEEEEeccCCCCceEEEEecCCC-ceeeecCHHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCCCCcceEEEee--
Confidence            445666655432  589999999995 899999999999988875  6889999999999996542     3444421  


Q ss_pred             CCCCcccceeeeeccCCCceeEEec-----ccccchhH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026516           99 NADGAAYAKIVAQKSKGMPRISISL-----TRLTGSAA-TEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAE  170 (237)
Q Consensus        99 ~s~G~~~akLVAqKaKGmP~ItI~L-----~kl~~saa-~D~manlsl~Lf~afrs~q~~~~~eqe~~s~L~~~L~sE  170 (237)
                      ...|.....+-=.  |-+.-|++-|     ..+..-+. -.-|-++++.....+...-.++.+|-++..+-.+.+.++
T Consensus        91 ~~~~~~~l~~t~~--K~~~~it~rLGsv~L~~~~~p~e~i~el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~q  166 (342)
T PF06632_consen   91 DRESNKSLSFTIE--KRLKDITFRLGSVKLKQVDNPAEVIRELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQ  166 (342)
T ss_dssp             ---ETTTTEEEEE--EEESSEEEEEEEEE-EE-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCceEEEEEE--EecCCceEEEeeEECCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1223333333333  3355666654     33333221 112445667777777666666666665554433333333

XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	237
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 8e-04
 Identities = 31/231 (13%), Positives = 78/231 (33%), Gaps = 48/231 (20%)

Query: 1   MKIEGFEPIFGEPKAE-------WA--DSRSDSLGRFLFHVSAPDSSHLLIQV-TDFRSN 50
           +  E  + I     A        W     + + + +F+  V   +   L+  + T+ R  
Sbjct: 46  LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105

Query: 51  TWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVA 110
           +   +  + Q D + ++         F  Y V+ +  +    + +       A    ++ 
Sbjct: 106 SMMTRMYIEQRDRLYNDN------QVFAKYNVSRL--QPYLKLRQALLELRPAKN--VLI 155

Query: 111 QKSKGMPRISISLTRLTGSA----ATEAMAKLSLELFTAF----------RSMQTLIVQE 156
               G+           GS     A +      ++    F           S +T++   
Sbjct: 156 D---GVL----------GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202

Query: 157 QERCLQLEKEAAAEKERNENIQNQPLYSKRQKLQKMNFSDKTDISASILSN 207
           Q+   Q++    +  + + NI+   ++S + +L+++  S   +    +L N
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIK-LRIHSIQAELRRLLKSKPYENCLLVLLN 252

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	237
3mud_A	175	DNA repair protein XRCC4, tropomyosin alpha-1 CHA;	94.37
3w03_C	184	DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS	94.17
1ik9_A	213	DNA repair protein XRCC4; DNA END joining, double-	93.54
3q4f_C	186	DNA repair protein XRCC4; DSB repair, nuclear, rec	88.73

>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*

Probab=94.37  E-value=0.36  Score=41.21  Aligned_cols=122  Identities=17%  Similarity=0.283  Sum_probs=86.9

Q ss_pred             CCeEEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhccc-----ccceEeecCCCCCCCcccceeeeec
Q 026516           38 SHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKS-----EDVKLILEGHSNADGAAYAKIVAQK  112 (237)
Q Consensus        38 ~hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~aslsS-----~~VkL~L~~~s~s~G~~~akLVAqK  112 (237)
                      +.+.|..||-| ++|....|-+++..+-|++|-  --..|++-|+-.|-+     ++-++.|.+.       .-.+-=.|
T Consensus        33 ~gf~i~ltDG~-saW~g~Vs~~~i~~eA~~~~m--e~e~Yv~el~kAl~~~~~~~~~~~f~~s~e-------~~~~syek  102 (175)
T 3mud_A           33 SGFVITLTDGH-SAWTGTVSESEISQEADDMAM--EKGKYVGELRKALLSGAGPADVYTFNFSKE-------SCYFFFEK  102 (175)
T ss_dssp             GEEEEEEECSS-CEEEEEEEHHHHHHHHHHTTC--CHHHHHHHHHHHHTTCCCTTCCEEEEECTT-------TCEEEEEE
T ss_pred             cceEEEEeCCc-ceeeeeeCHHHHHHHHHHhcC--cHHHHHHHHHHHHhcCCCCCcceEEecChh-------HHHHHHHH
Confidence            66899999999 579999999999999998876  467899999999933     4788888654       22222222


Q ss_pred             cCCCceeEEec-----ccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 026516          113 SKGMPRISISL-----TRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQ  180 (237)
Q Consensus       113 aKGmP~ItI~L-----~kl~~saa~D~manlsl~Lf~afrs~q~~~~~eqe~~s~L~~~L~sEKekne~iQ~q  180 (237)
                      .  +.-+++.|     ..+...|  ++|-.|.-   -+.|    ...+=|..+.+|+..|..||+++..||..
T Consensus       103 ~--lk~vsfrLGs~~Lk~a~~pa--E~ireli~---~Aer----tV~kLqkeiD~LEDeL~~eKek~k~i~~e  164 (175)
T 3mud_A          103 N--LKDVSFRLGSFNLEKVENPA--EVIRELIC---YCLD----TTAKNEKSIDDLEEKVAHAKEENLNMHQM  164 (175)
T ss_dssp             E--CSSCEEEEEEEECEECSCHH--HHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H--HHHHHHHhcccccccCCChH--HHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2  34455555     7777755  44443321   1222    23344678899999999999999888876

>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}

Probab=94.17  E-value=2.4  Score=36.22  Aligned_cols=131  Identities=16%  Similarity=0.225  Sum_probs=85.2

Q ss_pred             CCCccceEEEEeC-CC-CCCeEEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhcccccc-----eEee
Q 026516           22 SDSLGRFLFHVSA-PD-SSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDV-----KLIL   94 (237)
Q Consensus        22 s~~~~pfLFh~~a-~d-s~hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~aslsS~~V-----kL~L   94 (237)
                      |-+-.|++..+.= .| .+.+.|.+||-+ ++|.+..|-+++..+-+++|-  .-++|++-|+.+|-+++-     ++-+
T Consensus        32 s~p~~~yflk~~W~~~l~sgF~L~LTDG~-sAW~G~vSe~~I~~~A~~~~m--~~e~Yv~eL~kAl~~~~~~~~~Y~f~~  108 (184)
T 3w03_C           32 SEPSITHFLQVSWEKTLESGFVITLTDGH-SAWTGTVSESEISQEADDMAM--EKGKYVGELRKALLSGAGPADVYTFNF  108 (184)
T ss_dssp             TCTTSCEEEEEEESSCGGGEEEEEEECSS-CEEEEEEEHHHHHHHHHHTTC--CHHHHHHHHHHHHSSCCCSSCCEEEEE
T ss_pred             CCCCceEEEEEEeccCCCCceEEEEECCC-ceeeEEcCHHHHHHHHHHhCC--CHHHHHHHHHHHHhCCCCCCceEEEec
Confidence            4444566666644 33 367999999999 789999999999998888654  788999999999965443     5555


Q ss_pred             cCCCCCCCcccceeeeecc-CCCc--eeEEecccccchh-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026516           95 EGHSNADGAAYAKIVAQKS-KGMP--RISISLTRLTGSA-ATEAMAKLSLELFTAFRSMQTLIVQEQERCLQ  162 (237)
Q Consensus        95 ~~~s~s~G~~~akLVAqKa-KGmP--~ItI~L~kl~~sa-a~D~manlsl~Lf~afrs~q~~~~~eqe~~s~  162 (237)
                      .+       ...++.-.|. +++-  .=+++|.++.+.+ +.--|-+++++-+..++..-.++.+|-+|..+
T Consensus       109 s~-------e~~~fs~eK~l~di~frLGSv~L~~v~~p~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~  173 (184)
T 3w03_C          109 SK-------ESCYFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLR  173 (184)
T ss_dssp             CT-------TTCEEEEEEEETTEEEEEEEEECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Cc-------cceEEEeeeccCceEEEEeeeeeeECCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43       2345544443 2322  1147788887755 23335566666666665555555555554443

>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*

Probab=93.54  E-value=1.6  Score=37.44  Aligned_cols=63  Identities=16%  Similarity=0.235  Sum_probs=49.8

Q ss_pred             CccceEEEEeCCCC--CCeEEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhccccc
Q 026516           24 SLGRFLFHVSAPDS--SHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSED   89 (237)
Q Consensus        24 ~~~pfLFh~~a~ds--~hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~aslsS~~   89 (237)
                      +-..++.|+...+.  .++.|++||-+ +.|.++.+-+++...-+.  -+++..+|++-+...|..++
T Consensus        14 ~~~~~~l~~~w~~~~~~~f~l~~TdG~-~~w~g~v~~~~i~~rAk~--~~~~~eey~~~l~~aL~~~~   78 (213)
T 1ik9_A           14 PSITHFLQVSWEKTLESGFVITLTDGH-SAWTGTVSESEISQEADD--MAMEKGKYVGELRKALLSGA   78 (213)
T ss_dssp             EEEEEEEEEEESSCGGGEEEEEEECSS-CEEEEEEEHHHHHHHHHH--TTCCHHHHHHHHHHHHCC--
T ss_pred             CCCeEEEEEEEcCCCCCceEEEEecCC-CceEEEecHHHHHHHHHh--cCCCHHHHHHHHHHHHhCCC
Confidence            33567778877653  78999999985 789999999999854444  57899999999999998883

>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}

Probab=88.73  E-value=7.4  Score=33.59  Aligned_cols=129  Identities=15%  Similarity=0.227  Sum_probs=90.2

Q ss_pred             CccceEEEEeCCCC--CCeEEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhc-----ccccceEeecC
Q 026516           24 SLGRFLFHVSAPDS--SHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASI-----KSEDVKLILEG   96 (237)
Q Consensus        24 ~~~pfLFh~~a~ds--~hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~asl-----sS~~VkL~L~~   96 (237)
                      +..+.+..+.--..  +.+.|..||-| ++|.+..|-+++..+-|++|-  --..|++-|+-+|     ..++-++.|.+
T Consensus        43 p~~~yfLqvsW~~~lgsGF~i~LTDGq-SaW~G~VS~~~Is~eAd~m~M--e~e~YV~eL~KALv~~~~~~~~y~F~~S~  119 (186)
T 3q4f_C           43 PSITHFLQVSWEKTLESGFVITLTDGH-SAWTGTVSESEISQEADDMAM--EKGKYVGELRKALLSGAGPADVYTFNFSK  119 (186)
T ss_dssp             EEEEEEEEEEESSCGGGEEEEEEECSS-CEEEEEEEHHHHHHHHHHTTC--CHHHHHHHHHHHHSSCCCSSCCEEEEECT
T ss_pred             CCccEEEEEEeccCCCcceEEEEeCCc-ceeeeEECHHHHHHHHHHhcC--cHHHHHHHHHHHHhcCCCCCcceEEEecc
Confidence            33445555544443  67999999999 579999999999999999876  4678999999999     56688888875


Q ss_pred             CCCCCCcccceeeeecc-CCC--ceeEEecccccchhH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026516           97 HSNADGAAYAKIVAQKS-KGM--PRISISLTRLTGSAA-TEAMAKLSLELFTAFRSMQTLIVQEQERCLQ  162 (237)
Q Consensus        97 ~s~s~G~~~akLVAqKa-KGm--P~ItI~L~kl~~saa-~D~manlsl~Lf~afrs~q~~~~~eqe~~s~  162 (237)
                      .       +..+.=.|. ||+  .+=++.|.++..-+. ..=|-+.||.=-..++..-+++.+|-||.++
T Consensus       120 e-------~~~Fs~eK~LkdvsF~LGSv~L~~V~nPaE~irELi~~~L~~i~~L~a~N~hLqkENeRL~~  182 (186)
T 3q4f_C          120 E-------SCYFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLR  182 (186)
T ss_dssp             T-------TCEEEEEEECSSCEEEEEEEECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c-------eeEEEEEEEecCcEEEEeeEEeeeCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3       444443333 443  334566777776443 3444556777677777777777777777654

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00