Citrus Sinensis ID: 026524

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
Protein Sequence
MLPMTSSITNSQSGHCPASTLKLSGRALTSRSHYASSFPIVQLSKAPSVKYRRMFCVNSMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLDA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccEEEccccccHHHHHHHHHccccHHHccccccccEEEEEEEEccEEEEEEEEEEccccccHHHHHHHHHHHcccccccccccccEEEcccEEccccccccccccccccccccccccccccccccccEEEEcccccccccccEEEEcccccccccccEEEEEEcccHHHHHHHHHccccccccccccEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHccccccccccccccccccccccccHHHHccccccccccHHHHccHHHHHHHcHHHccccHEEEEEEEEEEEEccEEEEEEEEEEcccccHHHHHHHHHHHHccccccccccEEEEEEcccEEEEccccccccccccEccEccEcccccccccccccEEEEcccccccEcccEEEEccccHHHcccccEEEEEEEcHHHHHHHHcccEcccccEcccEEEEEEEEEEEEc
Coil and Loop (DISEMBL)
mlpmtssitnsqsghcpastlklsgraltsrshyassfpivqlskapsvkyrRMFCVNSMAKDVELQAKVTTKVffdvdiggkpagrivmglfgdvvpKTAENFRALCtgekgygykgcsFHRIIKDFMiqggdftegdgtggisiygssfedesfvlkhvgpgvlsmanagpntngsqffictvktpwldnrhvvFGHVIDGMDVVRKLESVetsrtdypkvpcriinsgelplda
Flexible Loop (DISEMBL)
mlpmtssitnsqsghcpASTLKLSGRALTSRshyassfpivqlskapsVKYRRMFCVNSMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVetsrtdypkvpcriinsgelplda
Low Complexity Region (SEG)
MLPMTSSITNSQSGHCPASTLKLSGRALTSRSHYASSFPIVQLSKAPSVKYRRMFCVNSMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQggdftegdgtggISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLDA
Disordered region (IsUnstruct)
*********************************YASSFPIVQLSKAPSVKYRRMFCVNSMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRII*********
Disordered Region (DISOPRED)
*************************************************KYRR*******************KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVR****************CRIINSGELPL**
Disordered Region (DISEMBL)
******************STLKLSGRALTSRSHYASSFPIVQLSKAPSVKYRRMFCVNSMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLDA
Disordered Region (DISPRO)
************SGHCP****KLSGRALTSRSHYASSFPIVQLSKAPSVKYRRMFCVNSMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLDA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLPMTSSITNSQSGHCPASTLKLSGRALTSRSHYASSFPIVQLSKAPSVKYRRMFCVNSMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLDA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	237	2.2.26 [Sep-21-2011]
P34791	260	Peptidyl-prolyl cis-trans	yes	no	0.894	0.815	0.730	1e-87
Q41651	248	Peptidyl-prolyl cis-trans	N/A	no	0.881	0.842	0.715	1e-85
Q9ASS6	259	Peptidyl-prolyl cis-trans	no	no	0.784	0.718	0.647	2e-68
P0CP78	231	Peptidyl-prolyl cis-trans	yes	no	0.704	0.722	0.716	4e-68
P0CP79	231	Peptidyl-prolyl cis-trans	N/A	no	0.704	0.722	0.716	4e-68
Q01490	203	Peptidyl-prolyl cis-trans	N/A	no	0.704	0.822	0.682	3e-63
Q8X166	212	Peptidyl-prolyl cis-trans	yes	no	0.696	0.778	0.654	5e-62
Q7S7Z6	285	Peptidyl-prolyl cis-trans	N/A	no	0.696	0.578	0.666	3e-61
P24369	216	Peptidyl-prolyl cis-trans	yes	no	0.751	0.824	0.629	6e-61
Q8LDP4	201	Peptidyl-prolyl cis-trans	no	no	0.797	0.940	0.6	1e-60

>sp|P34791|CP20C_ARATH Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic OS=Arabidopsis thaliana GN=CYP20-3 PE=1 SV=1

 Score =  322 bits (826), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 160/219 (73%), Positives = 177/219 (80%), Gaps = 7/219 (3%)

Query: 24  SGRALTSRSHYASSFPIVQLSKA-PSVKYRRMFCVNSMAKD----VELQAKVTTKVFFDV 78
           SG AL+SR HYAS  PI Q S    + K++R  CV SMA +    +E QAKVT KV+FDV
Sbjct: 44  SGIALSSRLHYAS--PIKQFSGVYATTKHQRTACVKSMAAEEEEVIEPQAKVTNKVYFDV 101

Query: 79  DIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEG 138
           +IGG+ AGRIVMGLFG+VVPKT ENFRALCTGEK YGYKG SFHRIIKDFMIQGGDFTEG
Sbjct: 102 EIGGEVAGRIVMGLFGEVVPKTVENFRALCTGEKKYGYKGSSFHRIIKDFMIQGGDFTEG 161

Query: 139 DGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFG 198
           +GTGGISIYG+ FEDE+F LKH GPG+LSMANAGPNTNGSQFFICTVKT WLDN+HVVFG
Sbjct: 162 NGTGGISIYGAKFEDENFTLKHTGPGILSMANAGPNTNGSQFFICTVKTSWLDNKHVVFG 221

Query: 199 HVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLDA 237
            VI+GM +VR LES ET   D PK  CRI   GELPLDA
Sbjct: 222 QVIEGMKLVRTLESQETRAFDVPKKGCRIYACGELPLDA 260

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q41651|CYPB_VICFA Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Vicia faba PE=1 SV=1

 Score =  315 bits (808), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 151/211 (71%), Positives = 174/211 (82%), Gaps = 2/211 (0%)

Query: 28  LTSRSHYASSFPIVQLSKAPSVKYRRMFCVNSMAKDV-ELQAKVTTKVFFDVDIGGKPAG 86
           L+S  HYA    + Q SKA S+  RR+ C +    +V ELQAKVT+K+FFD++IGG+ AG
Sbjct: 37  LSSTYHYAPRLSVSQQSKAKSITSRRITCASGAQGEVAELQAKVTSKIFFDIEIGGESAG 96

Query: 87  RIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISI 146
           RIV+GLFGD VPKT ENF+ L TG KGYGY+G  FHRII +FMIQGGDFTEG+GTGG+SI
Sbjct: 97  RIVIGLFGDAVPKTVENFKTLSTGAKGYGYQGSFFHRIIPNFMIQGGDFTEGNGTGGVSI 156

Query: 147 YGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDV 206
           YGS FEDESF LKHVGPGVLSMANAGPNTNGSQFFICTV TPWLDNRHVVFGHVI+G+DV
Sbjct: 157 YGSKFEDESFDLKHVGPGVLSMANAGPNTNGSQFFICTVPTPWLDNRHVVFGHVIEGLDV 216

Query: 207 VRKLESVETSRTD-YPKVPCRIINSGELPLD 236
           V++LES ETS+ D  PK PC+I  SGELPLD
Sbjct: 217 VKQLESQETSKLDNSPKKPCKIAKSGELPLD 247

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Vicia faba (taxid: 3906)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9ASS6|CP20B_ARATH Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1

 Score =  258 bits (660), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 123/190 (64%), Positives = 152/190 (80%), Gaps = 4/190 (2%)

Query: 50  KYRRMFCVNSMAKDV-ELQAKVTTKVFFDVDIG---GKPAGRIVMGLFGDVVPKTAENFR 105
           +  R F V S A+ V E Q+K+T KV+FD+ +G   GK AGRIV+GL+GD VP+T ENFR
Sbjct: 67  RNHRCFSVQSNAEVVTEPQSKITHKVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFR 126

Query: 106 ALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGV 165
           ALCTGEKG+GYKG +FHR+I+DFMIQGGDF +G+GTGG S+YG +F+DE+F L HVGPGV
Sbjct: 127 ALCTGEKGFGYKGSTFHRVIRDFMIQGGDFEKGNGTGGKSVYGRTFKDENFKLSHVGPGV 186

Query: 166 LSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPC 225
           LSMANAGPNTNGSQFFICT+KT WLD RHVVFG VI+GM+VV+ +E  ET R D P+   
Sbjct: 187 LSMANAGPNTNGSQFFICTIKTSWLDGRHVVFGQVIEGMEVVKLIEEQETDRGDRPRKKV 246

Query: 226 RIINSGELPL 235
            I + G+LP+
Sbjct: 247 VIADCGQLPM 256

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P0CP78|PPIB_CRYNJ Peptidyl-prolyl cis-trans isomerase B OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CPR2 PE=3 SV=1

 Score =  257 bits (657), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 124/173 (71%), Positives = 142/173 (82%), Gaps = 6/173 (3%)

Query: 70  VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEK------GYGYKGCSFHR 123
           +T KV+FD++ GGKP GRIVMGL+G  VPKTAENFRAL TG+       GYGY+G SFHR
Sbjct: 43  ITNKVYFDIEHGGKPLGRIVMGLYGKTVPKTAENFRALATGKNSDGEDLGYGYEGSSFHR 102

Query: 124 IIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFIC 183
           IIK+FMIQGGDFT+GDGTGG SIYGS F DE+F LKH GPGVLSMANAG +TNGSQFFIC
Sbjct: 103 IIKNFMIQGGDFTKGDGTGGKSIYGSKFPDENFKLKHTGPGVLSMANAGRDTNGSQFFIC 162

Query: 184 TVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 236
           TVKT WLDNRHVVFGHV++GMDVV  +E+V+TSR D P  P  I  SGELP++
Sbjct: 163 TVKTAWLDNRHVVFGHVLEGMDVVYAMENVKTSRGDKPVEPITIAASGELPIE 215

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P0CP79|PPIB_CRYNB Peptidyl-prolyl cis-trans isomerase B OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CPR2 PE=3 SV=1

 Score =  257 bits (657), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 124/173 (71%), Positives = 142/173 (82%), Gaps = 6/173 (3%)

Query: 70  VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEK------GYGYKGCSFHR 123
           +T KV+FD++ GGKP GRIVMGL+G  VPKTAENFRAL TG+       GYGY+G SFHR
Sbjct: 43  ITNKVYFDIEHGGKPLGRIVMGLYGKTVPKTAENFRALATGKNSDGEDLGYGYEGSSFHR 102

Query: 124 IIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFIC 183
           IIK+FMIQGGDFT+GDGTGG SIYGS F DE+F LKH GPGVLSMANAG +TNGSQFFIC
Sbjct: 103 IIKNFMIQGGDFTKGDGTGGKSIYGSKFPDENFKLKHTGPGVLSMANAGRDTNGSQFFIC 162

Query: 184 TVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 236
           TVKT WLDNRHVVFGHV++GMDVV  +E+V+TSR D P  P  I  SGELP++
Sbjct: 163 TVKTAWLDNRHVVFGHVLEGMDVVYAMENVKTSRGDKPVEPITIAASGELPIE 215

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q01490|PPIB_ORPSP Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyces sp. (strain PC-2) GN=CYPB PE=1 SV=1

 Score =  241 bits (615), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 114/167 (68%), Positives = 130/167 (77%)

Query: 69  KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDF 128
           KVT KV+FD+  G K  GRIV+GL+G+VVPKT ENFRAL TGEKGYGYK   FHR+IKDF
Sbjct: 27  KVTNKVYFDIKQGDKDLGRIVLGLYGEVVPKTVENFRALATGEKGYGYKNSKFHRVIKDF 86

Query: 129 MIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 188
           MIQGGDFT GDGTGG SIYG  F DE+F L+H GPG+LSMANAG +TNGSQFFI TV T 
Sbjct: 87  MIQGGDFTRGDGTGGKSIYGERFADENFKLRHTGPGILSMANAGRDTNGSQFFITTVTTS 146

Query: 189 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPL 235
           WLD RHVVFG VI+GMDVV  +E+ +T   D P  P  I + GELP+
Sbjct: 147 WLDGRHVVFGKVIEGMDVVTAIETTKTLPGDRPATPVIIADCGELPV 193

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Orpinomyces sp. (strain PC-2) (taxid: 50059)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q8X166|PPIB_ASPNG Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus niger GN=cypB PE=3 SV=1

 Score =  237 bits (604), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 108/165 (65%), Positives = 133/165 (80%)

Query: 69  KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDF 128
           K+T+KVFFD++ G KP GR+V+GL+G  VPKTAENFRAL TGEKG+GY+G +FHR+IKDF
Sbjct: 32  KITSKVFFDIEHGDKPLGRVVLGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIKDF 91

Query: 129 MIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 188
           MIQGGDFT GDGTGG SIYG  F DE+F L+H   G+LSMANAG +TNGSQFFI TV TP
Sbjct: 92  MIQGGDFTRGDGTGGKSIYGEKFADENFKLRHTRKGLLSMANAGKDTNGSQFFITTVPTP 151

Query: 189 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           WLD RHVVFG V++G ++V ++E+V   R+D P    +I+ SGEL
Sbjct: 152 WLDGRHVVFGEVLEGYEIVAQIENVPKGRSDRPVETVKIVKSGEL 196

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Aspergillus niger (taxid: 5061)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q7S7Z6|PPIB_NEUCR Peptidyl-prolyl cis-trans isomerase B OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cpr-2 PE=3 SV=3

 Score =  234 bits (598), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 110/165 (66%), Positives = 130/165 (78%)

Query: 69  KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDF 128
           K+T KV+FD++ G KP GRIVMGL+G  VPKTAENFRAL TGEKG+GY+G +FHR+IK F
Sbjct: 32  KITHKVYFDIEQGDKPLGRIVMGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIKQF 91

Query: 129 MIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 188
           MIQGGDFT+GDGTGG SIYG  F DE+F LKH   G+LSMANAG +TNGSQFFI TV T 
Sbjct: 92  MIQGGDFTKGDGTGGKSIYGDKFPDENFKLKHSKKGLLSMANAGKDTNGSQFFITTVITS 151

Query: 189 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           WLD +HVVFG V++G DVV K+E+ +T   D P  P +I  SGEL
Sbjct: 152 WLDGKHVVFGEVLEGYDVVEKIENTKTGPRDAPAEPIKIAKSGEL 196

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P24369|PPIB_MOUSE Peptidyl-prolyl cis-trans isomerase B OS=Mus musculus GN=Ppib PE=2 SV=2

 Score =  234 bits (596), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 112/178 (62%), Positives = 135/178 (75%)

Query: 59  SMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKG 118
           S+A D +   KVT KV+FD+ IG +  GR+V GLFG  VPKT +NF AL TGEKG+GYK 
Sbjct: 31  SVANDKKKGPKVTVKVYFDLQIGDESVGRVVFGLFGKTVPKTVDNFVALATGEKGFGYKN 90

Query: 119 CSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGS 178
             FHR+IKDFMIQGGDFT GDGTGG SIYG  F DE+F LKH GPG +SMANAG +TNGS
Sbjct: 91  SKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGS 150

Query: 179 QFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 236
           QFFI TVKT WLD +HVVFG V++GMDVVRK+ES +T   D P     I++SG++ ++
Sbjct: 151 QFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVESTKTDSRDKPLKDVIIVDSGKIEVE 208

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q8LDP4|CP19D_ARATH Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2

 Score =  233 bits (594), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 123/205 (60%), Positives = 144/205 (70%), Gaps = 16/205 (7%)

Query: 43  LSKAPSVKYRRMFCVNSMAKDVELQAK-----VTTKVFFDVDIGGKPAGRIVMGLFGDVV 97
           ++KA  +    +F   ++A    +QAK     VT KV+FDV+I GK AGR+V+GLFG  V
Sbjct: 1   MAKASFILLGTLFLFGAIA---SIQAKEDLKEVTHKVYFDVEIDGKSAGRVVIGLFGKAV 57

Query: 98  PKTAENFRALCTGEKGYG-------YKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSS 150
           PKTAENFRALCTGEKG G       YKG  FHRII  FMIQGGDFT G+G GG SIYG  
Sbjct: 58  PKTAENFRALCTGEKGVGKSGKPLHYKGSKFHRIIPSFMIQGGDFTHGNGMGGESIYGQK 117

Query: 151 FEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKL 210
           F DE+F LKH GPGVLSMAN+G +TNGSQFFI TV T WLD RHVVFG V+ GMDVV K+
Sbjct: 118 FADENFKLKHTGPGVLSMANSGEDTNGSQFFITTVTTSWLDGRHVVFGKVVQGMDVVYKI 177

Query: 211 ESVETSRTDYPKVPCRIINSGELPL 235
           E+ E  ++  PK    I +SGELPL
Sbjct: 178 EA-EGKQSGTPKSKVVIADSGELPL 201

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. May be involved during embryogenesis and organ development by regulating the folding of EMB30/GNOM, and thus, by modulating its activity.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
255548201	261	peptidyl-prolyl cis-trans isomerase, put	0.962	0.873	0.841	1e-112
224064414	266	predicted protein [Populus trichocarpa]	0.978	0.872	0.814	1e-109
147766520	253	hypothetical protein VITISV_015631 [Viti	0.919	0.861	0.839	1e-105
359480225	253	PREDICTED: peptidyl-prolyl cis-trans iso	0.919	0.861	0.834	1e-104
359806424	260	uncharacterized protein LOC100785805 [Gl	0.924	0.842	0.776	5e-97
388500332	262	unknown [Lotus japonicus]	0.886	0.801	0.778	4e-93
356534945	263	PREDICTED: peptidyl-prolyl cis-trans iso	0.962	0.866	0.683	1e-91
356534947	252	PREDICTED: peptidyl-prolyl cis-trans iso	0.962	0.904	0.683	1e-91
357511613	256	Peptidyl-prolyl cis-trans isomerase [Med	0.890	0.824	0.759	3e-91
388510812	261	unknown [Medicago truncatula]	0.890	0.808	0.759	4e-91

>gi|255548201|ref|XP_002515157.1| peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis] gi|223545637|gb|EEF47141.1| peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/233 (84%), Positives = 213/233 (91%), Gaps = 5/233 (2%)

Query: 4   MTSSITNSQSGHCPASTLKLSGRALTSRSHYASSFPIVQLSKAPSVKYRRMFCVNSMAKD 63
           M S++ +S SG     TL  +GRALTSRS Y+ SFPI QLSKAPSVK++RM C+ +MA D
Sbjct: 33  MISAMRSSASG-----TLSFAGRALTSRSRYSLSFPITQLSKAPSVKHQRMACIKAMAND 87

Query: 64  VELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHR 123
           +E+QAKVTTKVFFDVDIGG+PAGRIVMGLFGDVVPKTAENFRALCTG+KGYGYKGCSFHR
Sbjct: 88  LEVQAKVTTKVFFDVDIGGEPAGRIVMGLFGDVVPKTAENFRALCTGDKGYGYKGCSFHR 147

Query: 124 IIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFIC 183
           IIKDFMIQGGDFTEGDGTGG+SI+GSSFEDESF LKHVGPGVLSMANAGPNTNGSQFFIC
Sbjct: 148 IIKDFMIQGGDFTEGDGTGGVSIFGSSFEDESFDLKHVGPGVLSMANAGPNTNGSQFFIC 207

Query: 184 TVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 236
           TVKTPWLDNRHVVFG VIDGMDVVRKLESVETSR+DYP+ PCRIIN GELPLD
Sbjct: 208 TVKTPWLDNRHVVFGQVIDGMDVVRKLESVETSRSDYPRKPCRIINCGELPLD 260

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064414|ref|XP_002301464.1| predicted protein [Populus trichocarpa] gi|222843190|gb|EEE80737.1| predicted protein [Populus trichocarpa]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/232 (81%), Positives = 208/232 (89%)

Query: 6   SSITNSQSGHCPASTLKLSGRALTSRSHYASSFPIVQLSKAPSVKYRRMFCVNSMAKDVE 65
           S+I N++ G+    TL   GRALTSRSHYAS FPI++L KAP +K +RM C NSMA DV+
Sbjct: 35  STIRNARGGYSQTPTLNCLGRALTSRSHYASKFPIIRLPKAPYIKNQRMACANSMANDVD 94

Query: 66  LQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRII 125
           LQAKVTTK FFDV++GG+  GRIVMGLFGDVVPKTAENFRALCTG+KGYGYKGCSFHRII
Sbjct: 95  LQAKVTTKCFFDVEVGGELVGRIVMGLFGDVVPKTAENFRALCTGDKGYGYKGCSFHRII 154

Query: 126 KDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTV 185
           KDFMIQGGDFT GDGTGG SIYGSSFEDESF LKHVGPGVLSMANAGPNTNGSQFFIC+V
Sbjct: 155 KDFMIQGGDFTRGDGTGGKSIYGSSFEDESFSLKHVGPGVLSMANAGPNTNGSQFFICSV 214

Query: 186 KTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLDA 237
           KTPWLDNRHVVFGHVIDGMDVVRKLESVETSR+D P+ PCR++NSGELPLD+
Sbjct: 215 KTPWLDNRHVVFGHVIDGMDVVRKLESVETSRSDNPRKPCRVVNSGELPLDS 266

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766520|emb|CAN69876.1| hypothetical protein VITISV_015631 [Vitis vinifera]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/218 (83%), Positives = 195/218 (89%)

Query: 20  TLKLSGRALTSRSHYASSFPIVQLSKAPSVKYRRMFCVNSMAKDVELQAKVTTKVFFDVD 79
           TL   GR L S+SHYAS F I  LSKA S  +RR+ CVNSMA +VELQAKVTTK FFDVD
Sbjct: 36  TLSCHGRGLASKSHYASCFSITPLSKASSAGHRRLMCVNSMANEVELQAKVTTKCFFDVD 95

Query: 80  IGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGD 139
           IGG+P GRIV+GLFG+VVPKTAENFR LCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGD
Sbjct: 96  IGGEPVGRIVIGLFGEVVPKTAENFRVLCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGD 155

Query: 140 GTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGH 199
           GTGGISIYGSSFEDE+F L HVGPGVLSMANAGPNTNGSQFFICTVKTPWLD RHVVFGH
Sbjct: 156 GTGGISIYGSSFEDENFALTHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDRRHVVFGH 215

Query: 200 VIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLDA 237
           VIDGMDVVRKLES ETSR+DYPK+ CRIIN GELP+D+
Sbjct: 216 VIDGMDVVRKLESQETSRSDYPKLTCRIINCGELPMDS 253

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480225|ref|XP_002273421.2| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic-like isoform 1 [Vitis vinifera] gi|297744066|emb|CBI37036.3| unnamed protein product [Vitis vinifera]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/218 (83%), Positives = 194/218 (88%)

Query: 20  TLKLSGRALTSRSHYASSFPIVQLSKAPSVKYRRMFCVNSMAKDVELQAKVTTKVFFDVD 79
           TL   GR L S+SHYAS F I  LSK  S  +RR+ CVNSMA +VELQAKVTTK FFDVD
Sbjct: 36  TLSCHGRGLASKSHYASCFSITPLSKVNSAGHRRLMCVNSMANEVELQAKVTTKCFFDVD 95

Query: 80  IGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGD 139
           IGG+P GRIV+GLFG+VVPKTAENFR LCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGD
Sbjct: 96  IGGEPVGRIVIGLFGEVVPKTAENFRVLCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGD 155

Query: 140 GTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGH 199
           GTGGISIYGSSFEDE+F L HVGPGVLSMANAGPNTNGSQFFICTVKTPWLD RHVVFGH
Sbjct: 156 GTGGISIYGSSFEDENFALTHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDRRHVVFGH 215

Query: 200 VIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLDA 237
           VIDGMDVVRKLES ETSR+DYPK+ CRIIN GELP+D+
Sbjct: 216 VIDGMDVVRKLESQETSRSDYPKLTCRIINCGELPMDS 253

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806424|ref|NP_001240987.1| uncharacterized protein LOC100785805 [Glycine max] gi|255645203|gb|ACU23099.1| unknown [Glycine max]

 Score =  359 bits (922), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 170/219 (77%), Positives = 189/219 (86%)

Query: 19  STLKLSGRALTSRSHYASSFPIVQLSKAPSVKYRRMFCVNSMAKDVELQAKVTTKVFFDV 78
           S L   G+ALTSRSH A  F + + S+A S+ YRRM CVN+    VELQAKVTTK FFDV
Sbjct: 42  SPLGYYGKALTSRSHNALRFSVTRQSEARSIGYRRMTCVNAADNVVELQAKVTTKCFFDV 101

Query: 79  DIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEG 138
           ++GG+P GRIV+GLFG+VVPKT ENFRALCTGEKGYGYKG SFHRIIKDFMIQGGDFTEG
Sbjct: 102 EVGGEPVGRIVLGLFGEVVPKTVENFRALCTGEKGYGYKGSSFHRIIKDFMIQGGDFTEG 161

Query: 139 DGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFG 198
           +GTGGISIYG SF+DESF LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFG
Sbjct: 162 NGTGGISIYGPSFKDESFALKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFG 221

Query: 199 HVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLDA 237
           H+IDGMDVV+ LES ETSR D P+ PCRI+N GELP++ 
Sbjct: 222 HIIDGMDVVKTLESQETSRLDVPRKPCRIVNCGELPIEG 260

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500332|gb|AFK38232.1| unknown [Lotus japonicus]

 Score =  346 bits (888), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 165/212 (77%), Positives = 183/212 (86%), Gaps = 2/212 (0%)

Query: 26  RALTSRSHYASSFPIVQLSKAPSVKYRRMFCVNSMAKDVELQAKVTTKVFFDVDIGGKPA 85
           + L SRSHYA+ FP+   S+  S  +RRM C N+    +ELQAKVT+KVFFDV IGG+ A
Sbjct: 51  KTLASRSHYAAKFPVTLKSEGKSTTFRRMTC-NAKESALELQAKVTSKVFFDVTIGGEAA 109

Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS 145
           GRIV GLFGDVVPKTAENFRALCTGEKGYG+K C FHRIIKDFMIQGGDFTEG+GTGGIS
Sbjct: 110 GRIVFGLFGDVVPKTAENFRALCTGEKGYGFKDCYFHRIIKDFMIQGGDFTEGNGTGGIS 169

Query: 146 IYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMD 205
           IYG+ FEDE+F LKHVGPGVLSMANAGPNTNGSQFFICTV+TPWLDNRHVVFGHVIDGMD
Sbjct: 170 IYGAKFEDENFSLKHVGPGVLSMANAGPNTNGSQFFICTVQTPWLDNRHVVFGHVIDGMD 229

Query: 206 VVRKLESVETSRTD-YPKVPCRIINSGELPLD 236
           VVR LES ETSR+D  P+ PC+I NSGELPL+
Sbjct: 230 VVRTLESQETSRSDNSPRKPCKIANSGELPLE 261

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534945|ref|XP_003536011.1| PREDICTED: peptidyl-prolyl cis-trans isomerase, chloroplastic isoform 1 [Glycine max]

 Score =  341 bits (875), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 162/237 (68%), Positives = 190/237 (80%), Gaps = 9/237 (3%)

Query: 1   MLPMTSSITNSQSGHCPASTLKLSGRALTSRSHYASSFPIVQLSKAPSVKYRRMFCVNSM 60
           M  +  S T SQ G+         G+ L SRSHYA+ F + + S+A S+ YRRM C N+ 
Sbjct: 36  MTHVVRSSTKSQLGY---------GKTLASRSHYAARFSVSRQSEAKSITYRRMTCTNAK 86

Query: 61  AKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCS 120
              ++LQAKVT K FFDV+IGG+PAGR+V GLFG+ VPKT ENFRALCTGEKGYGYKG  
Sbjct: 87  ENVLQLQAKVTNKCFFDVEIGGEPAGRVVFGLFGEDVPKTVENFRALCTGEKGYGYKGSY 146

Query: 121 FHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQF 180
           FHRII++FM+QGGDFTEG+GTGGISIYG SF+DE+F LKHVGPGVLSMANAG NTNGSQF
Sbjct: 147 FHRIIQNFMVQGGDFTEGNGTGGISIYGDSFDDENFNLKHVGPGVLSMANAGTNTNGSQF 206

Query: 181 FICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLDA 237
           FICTV+TPWLDNRHVVFGHVIDGMDVVR LES ET + D P+ PC+I +SGELP+D+
Sbjct: 207 FICTVQTPWLDNRHVVFGHVIDGMDVVRTLESQETGKFDNPRKPCKIADSGELPIDS 263

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534947|ref|XP_003536012.1| PREDICTED: peptidyl-prolyl cis-trans isomerase, chloroplastic isoform 2 [Glycine max]

 Score =  341 bits (874), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 162/237 (68%), Positives = 190/237 (80%), Gaps = 9/237 (3%)

Query: 1   MLPMTSSITNSQSGHCPASTLKLSGRALTSRSHYASSFPIVQLSKAPSVKYRRMFCVNSM 60
           M  +  S T SQ G+         G+ L SRSHYA+ F + + S+A S+ YRRM C N+ 
Sbjct: 25  MTHVVRSSTKSQLGY---------GKTLASRSHYAARFSVSRQSEAKSITYRRMTCTNAK 75

Query: 61  AKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCS 120
              ++LQAKVT K FFDV+IGG+PAGR+V GLFG+ VPKT ENFRALCTGEKGYGYKG  
Sbjct: 76  ENVLQLQAKVTNKCFFDVEIGGEPAGRVVFGLFGEDVPKTVENFRALCTGEKGYGYKGSY 135

Query: 121 FHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQF 180
           FHRII++FM+QGGDFTEG+GTGGISIYG SF+DE+F LKHVGPGVLSMANAG NTNGSQF
Sbjct: 136 FHRIIQNFMVQGGDFTEGNGTGGISIYGDSFDDENFNLKHVGPGVLSMANAGTNTNGSQF 195

Query: 181 FICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLDA 237
           FICTV+TPWLDNRHVVFGHVIDGMDVVR LES ET + D P+ PC+I +SGELP+D+
Sbjct: 196 FICTVQTPWLDNRHVVFGHVIDGMDVVRTLESQETGKFDNPRKPCKIADSGELPIDS 252

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511613|ref|XP_003626095.1| Peptidyl-prolyl cis-trans isomerase [Medicago truncatula] gi|355501110|gb|AES82313.1| Peptidyl-prolyl cis-trans isomerase [Medicago truncatula]

 Score =  340 bits (872), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 161/212 (75%), Positives = 178/212 (83%), Gaps = 1/212 (0%)

Query: 26  RALTSRSHYASSFPIVQLSKAPSVKY-RRMFCVNSMAKDVELQAKVTTKVFFDVDIGGKP 84
           ++L+ +SH A  F   Q   A S+ Y RR+ C  +     ELQAKVTTK FFDV+ GG+ 
Sbjct: 44  KSLSLKSHVAFRFSATQQFGARSISYSRRITCAAAAENVQELQAKVTTKCFFDVEAGGES 103

Query: 85  AGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI 144
            GRIV+GLFG+V PKT ENFRALCTG+KGYGYKGCSFHRIIK+FMIQGGDFTEG+GTGG+
Sbjct: 104 LGRIVLGLFGEVAPKTVENFRALCTGDKGYGYKGCSFHRIIKEFMIQGGDFTEGNGTGGV 163

Query: 145 SIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 204
           SIYGSSFEDESF LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM
Sbjct: 164 SIYGSSFEDESFALKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 223

Query: 205 DVVRKLESVETSRTDYPKVPCRIINSGELPLD 236
           DVVR LES ETSR D PK PCRI+N GELP+D
Sbjct: 224 DVVRTLESQETSRLDIPKKPCRIVNCGELPID 255

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510812|gb|AFK43472.1| unknown [Medicago truncatula]

 Score =  340 bits (871), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 161/212 (75%), Positives = 178/212 (83%), Gaps = 1/212 (0%)

Query: 26  RALTSRSHYASSFPIVQLSKAPSVKY-RRMFCVNSMAKDVELQAKVTTKVFFDVDIGGKP 84
           ++L+ +SH A  F   Q   A S+ Y RR+ C  +     ELQAKVTTK FFDV+ GG+ 
Sbjct: 49  KSLSLKSHVAFRFSATQQFGARSISYSRRITCAAAAENVQELQAKVTTKCFFDVEAGGES 108

Query: 85  AGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI 144
            GRIV+GLFG+V PKT ENFRALCTG+KGYGYKGCSFHRIIK+FMIQGGDFTEG+GTGG+
Sbjct: 109 LGRIVLGLFGEVAPKTVENFRALCTGDKGYGYKGCSFHRIIKEFMIQGGDFTEGNGTGGV 168

Query: 145 SIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 204
           SIYGSSFEDESF LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM
Sbjct: 169 SIYGSSFEDESFALKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 228

Query: 205 DVVRKLESVETSRTDYPKVPCRIINSGELPLD 236
           DVVR LES ETSR D PK PCRI+N GELP+D
Sbjct: 229 DVVRTLESQETSRLDIPKKPCRIVNCGELPID 260

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
TAIR|locus:2079507	313	ROC4 "rotamase CYP 4" [Arabido	0.894	0.677	0.680	4.1e-72
TAIR|locus:2179822	259	Pnsl5 "Photosynthetic NDH subc	0.919	0.841	0.530	2.8e-57
UNIPROTKB|P30405	207	PPIF "Peptidyl-prolyl cis-tran	0.586	0.671	0.697	2.2e-50
ZFIN|ZDB-GENE-040426-1955	216	ppib "peptidylprolyl isomerase	0.772	0.847	0.557	2.2e-50
MGI|MGI:97750	216	Ppib "peptidylprolyl isomerase	0.751	0.824	0.567	4.6e-50
UNIPROTKB|P45877	212	PPIC "Peptidyl-prolyl cis-tran	0.691	0.773	0.628	5.8e-50
UNIPROTKB|F1NV93	207	PPIB "Peptidyl-prolyl cis-tran	0.751	0.859	0.567	9.5e-50
UNIPROTKB|F1P4M4	223	PPIB "Peptidyl-prolyl cis-tran	0.751	0.798	0.567	9.5e-50
UNIPROTKB|F1RVH5	211	LOC100524880 "Peptidyl-prolyl	0.691	0.777	0.628	9.5e-50
UNIPROTKB|Q08E11	212	PPIC "Peptidyl-prolyl cis-tran	0.691	0.773	0.621	1.2e-49

TAIR|locus:2079507 ROC4 "rotamase CYP 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
 Identities = 149/219 (68%), Positives = 165/219 (75%)

Query:    24 SGRALTSRSHYASSFPIVQLSKA-PSVKYRRMFCVNSMAKD----VELQAKVTTKVFFDV 78
             SG AL+SR HYAS  PI Q S    + K++R  CV SMA +    +E QAKVT KV+FDV
Sbjct:    97 SGIALSSRLHYAS--PIKQFSGVYATTKHQRTACVKSMAAEEEEVIEPQAKVTNKVYFDV 154

Query:    79 DIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXX 138
             +IGG+ AGRIVMGLFG+VVPKT ENFRALCTGEK YGYKG SFHRIIKDFMIQ       
Sbjct:   155 EIGGEVAGRIVMGLFGEVVPKTVENFRALCTGEKKYGYKGSSFHRIIKDFMIQGGDFTEG 214

Query:   139 XXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFG 198
                  ISIYG+ FEDE+F LKH GPG+LSMANAGPNTNGSQFFICTVKT WLDN+HVVFG
Sbjct:   215 NGTGGISIYGAKFEDENFTLKHTGPGILSMANAGPNTNGSQFFICTVKTSWLDNKHVVFG 274

Query:   199 HVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLDA 237
              VI+GM +VR LES ET   D PK  CRI   GELPLDA
Sbjct:   275 QVIEGMKLVRTLESQETRAFDVPKKGCRIYACGELPLDA 313

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP;RCA

GO:0048046 "apoplast" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0009642 "response to light intensity" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0010555 "response to mannitol stimulus" evidence=IMP

GO:0019344 "cysteine biosynthetic process" evidence=RCA;IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=IDA;RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2179822 Pnsl5 "Photosynthetic NDH subcomplex L 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
 Identities = 120/226 (53%), Positives = 154/226 (68%)

Query:    18 ASTLKLSGRALTSRSHYASSFPIVQLSKAPSVKY----RRMFCVNSMAKDV-ELQAKVTT 72
             +++ +L  ++      ++SS P    S      Y     R F V S A+ V E Q+K+T 
Sbjct:    31 STSFRLRTKSSFDSISFSSSTPFSASSLLLHTSYTKRNHRCFSVQSNAEVVTEPQSKITH 90

Query:    73 KVFFDVDIG---GKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
             KV+FD+ +G   GK AGRIV+GL+GD VP+T ENFRALCTGEKG+GYKG +FHR+I+DFM
Sbjct:    91 KVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTGEKGFGYKGSTFHRVIRDFM 150

Query:   130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
             IQ             S+YG +F+DE+F L HVGPGVLSMANAGPNTNGSQFFICT+KT W
Sbjct:   151 IQGGDFEKGNGTGGKSVYGRTFKDENFKLSHVGPGVLSMANAGPNTNGSQFFICTIKTSW 210

Query:   190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPL 235
             LD RHVVFG VI+GM+VV+ +E  ET R D P+    I + G+LP+
Sbjct:   211 LDGRHVVFGQVIEGMEVVKLIEEQETDRGDRPRKKVVIADCGQLPM 256

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS;IMP

GO:0005739 "mitochondrion" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0009533 "chloroplast stromal thylakoid" evidence=IDA

GO:0010275 "NAD(P)H dehydrogenase complex assembly" evidence=IMP

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

UNIPROTKB|P30405 PPIF "Peptidyl-prolyl cis-trans isomerase F, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 97/139 (69%), Positives = 109/139 (78%)

Query:    74 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXX 133
             V+ DVD  GKP GR+V+ L  DVVPKTAENFRALCTGEKG+GYKG +FHR+I  FM Q  
Sbjct:    48 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAG 107

Query:   134 XXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNR 193
                        SIYGS F DE+F LKHVGPGVLSMANAGPNTNGSQFFICT+KT WLD +
Sbjct:   108 DFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGK 167

Query:   194 HVVFGHVIDGMDVVRKLES 212
             HVVFGHV +GMDVV+K+ES
Sbjct:   168 HVVFGHVKEGMDVVKKIES 186

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0008637 "apoptotic mitochondrial changes" evidence=IEA

GO:0016018 "cyclosporin A binding" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:2001243 "negative regulation of intrinsic apoptotic signaling pathway" evidence=IMP

GO:0043066 "negative regulation of apoptotic process" evidence=IDA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IDA

GO:0010940 "positive regulation of necrotic cell death" evidence=IMP

GO:0070301 "cellular response to hydrogen peroxide" evidence=IMP

GO:0002931 "response to ischemia" evidence=ISS

GO:0071277 "cellular response to calcium ion" evidence=ISS

GO:0090200 "positive regulation of release of cytochrome c from mitochondria" evidence=ISS

GO:0046902 "regulation of mitochondrial membrane permeability" evidence=ISS

GO:0010849 "regulation of proton-transporting ATPase activity, rotational mechanism" evidence=ISS

GO:0032780 "negative regulation of ATPase activity" evidence=ISS

GO:0071243 "cellular response to arsenic-containing substance" evidence=ISS

GO:0090324 "negative regulation of oxidative phosphorylation" evidence=ISS

GO:2000276 "negative regulation of oxidative phosphorylation uncoupler activity" evidence=ISS

GO:0016020 "membrane" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-040426-1955 ppib "peptidylprolyl isomerase B (cyclophilin B)" [Danio rerio (taxid:7955)]

 Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 102/183 (55%), Positives = 127/183 (69%)

Query:    54 MFCVNSMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKG 113
             +F   + A + +   KVT KV+FD+ IG + AGRIV+GLFG  VPKT ENF  L TGEKG
Sbjct:    26 LFPSETEADEKKKGPKVTAKVYFDIKIGDEDAGRIVIGLFGKTVPKTTENFLQLATGEKG 85

Query:   114 YGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGP 173
             +GYKG  FHR+IKDFMIQ             SIYG  F DE+F LKH GPG LSMANAG 
Sbjct:    86 FGYKGSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGDRFPDENFKLKHYGPGWLSMANAGK 145

Query:   174 NTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
             +TNGSQFFI TV+TPWLD +HVVFG +++GMDVVRK+E+ +T   D P     I +SG++
Sbjct:   146 DTNGSQFFITTVQTPWLDGKHVVFGKILEGMDVVRKIEATKTDGRDKPLKDVSIHDSGKI 205

Query:   234 PLD 236
              ++
Sbjct:   206 DVE 208

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016853 "isomerase activity" evidence=IEA

MGI|MGI:97750 Ppib "peptidylprolyl isomerase B" [Mus musculus (taxid:10090)]

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 101/178 (56%), Positives = 124/178 (69%)

Query:    59 SMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKG 118
             S+A D +   KVT KV+FD+ IG +  GR+V GLFG  VPKT +NF AL TGEKG+GYK 
Sbjct:    31 SVANDKKKGPKVTVKVYFDLQIGDESVGRVVFGLFGKTVPKTVDNFVALATGEKGFGYKN 90

Query:   119 CSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGS 178
               FHR+IKDFMIQ             SIYG  F DE+F LKH GPG +SMANAG +TNGS
Sbjct:    91 SKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGS 150

Query:   179 QFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 236
             QFFI TVKT WLD +HVVFG V++GMDVVRK+ES +T   D P     I++SG++ ++
Sbjct:   151 QFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVESTKTDSRDKPLKDVIIVDSGKIEVE 208

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0042277 "peptide binding" evidence=IEA

UNIPROTKB|P45877 PPIC "Peptidyl-prolyl cis-trans isomerase C" [Homo sapiens (taxid:9606)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 103/164 (62%), Positives = 114/164 (69%)

Query:    70 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
             VT KVFFDV IG K  GRIV+GLFG VVPKT ENF AL TGEKGYGYKG  FHR+IKDFM
Sbjct:    36 VTAKVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFM 95

Query:   130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
             IQ            +SIYG +F DE+F LKH G G +SMANAGP+TNGSQFFI   K  W
Sbjct:    96 IQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTW 155

Query:   190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
             LD +HVVFG VIDGM VV  +E   T   D P   C IINSG++
Sbjct:   156 LDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKI 199

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0016018 "cyclosporin A binding" evidence=TAS

UNIPROTKB|F1NV93 PPIB "Peptidyl-prolyl cis-trans isomerase" [Gallus gallus (taxid:9031)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 101/178 (56%), Positives = 124/178 (69%)

Query:    59 SMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKG 118
             S A + +   KVT KVFFD+ +G + AGR+V+GLFG  VPKT ENF AL TGEKG+G+KG
Sbjct:    22 SRADERKKGPKVTAKVFFDLRVGEEDAGRVVIGLFGKTVPKTVENFVALATGEKGFGFKG 81

Query:   119 CSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGS 178
               FHR+IKDFMIQ             SIYG  F DE+F LKH GPG +SMANAG +TNGS
Sbjct:    82 SKFHRVIKDFMIQGGDFTRGDGTGGKSIYGDRFPDENFKLKHYGPGWVSMANAGKDTNGS 141

Query:   179 QFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 236
             QFFI TVKTPWLD +HVVFG V++GMDVVRK+E+ +T   D P     I + G + ++
Sbjct:   142 QFFITTVKTPWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVTIADCGTIEVE 199

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

UNIPROTKB|F1P4M4 PPIB "Peptidyl-prolyl cis-trans isomerase" [Gallus gallus (taxid:9031)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 101/178 (56%), Positives = 124/178 (69%)

Query:    59 SMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKG 118
             S A + +   KVT KVFFD+ +G + AGR+V+GLFG  VPKT ENF AL TGEKG+G+KG
Sbjct:    38 SRADERKKGPKVTAKVFFDLRVGEEDAGRVVIGLFGKTVPKTVENFVALATGEKGFGFKG 97

Query:   119 CSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGS 178
               FHR+IKDFMIQ             SIYG  F DE+F LKH GPG +SMANAG +TNGS
Sbjct:    98 SKFHRVIKDFMIQGGDFTRGDGTGGKSIYGDRFPDENFKLKHYGPGWVSMANAGKDTNGS 157

Query:   179 QFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 236
             QFFI TVKTPWLD +HVVFG V++GMDVVRK+E+ +T   D P     I + G + ++
Sbjct:   158 QFFITTVKTPWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVTIADCGTIEVE 215

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

UNIPROTKB|F1RVH5 LOC100524880 "Peptidyl-prolyl cis-trans isomerase" [Sus scrofa (taxid:9823)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 103/164 (62%), Positives = 114/164 (69%)

Query:    70 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
             VT KVFFDV IG K  GRIV+GLFG VVPKT ENF AL TGE+GYGYKG  FHR+IKDFM
Sbjct:    35 VTAKVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFIALATGERGYGYKGSKFHRVIKDFM 94

Query:   130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
             IQ            ISIYG +F DE+F LKH G G +SMANAGP+TNGSQFFI   K  W
Sbjct:    95 IQGGDFTHGDGTGGISIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTW 154

Query:   190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
             LD +HVVFG VIDGM VV  +E   T   D P   C IINSG++
Sbjct:   155 LDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTDCSIINSGKI 198

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|Q08E11 PPIC "Peptidyl-prolyl cis-trans isomerase C" [Bos taurus (taxid:9913)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 102/164 (62%), Positives = 114/164 (69%)

Query:    70 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
             VT KVFFDV IG K  GRIV+GLFG VVPKT ENF AL TGEKGYGYKG  FHR+IKDFM
Sbjct:    36 VTAKVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFM 95

Query:   130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
             IQ            ISIYG +F DE+F LKH G G +SMANAGP+TNGSQFFI   K  W
Sbjct:    96 IQGGDFTRGDGTGGISIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTW 155

Query:   190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
             LD +HVVFG V+DGM VV  +E   T   D P   C I+NSG++
Sbjct:   156 LDGKHVVFGKVLDGMTVVHSIELQATDGHDRPFTDCSIVNSGKI 199

GO:0005737 "cytoplasm" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0042277 "peptide binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q41651	CYPB_VICFA	5, ., 2, ., 1, ., 8	0.7156	0.8818	0.8427	N/A	no
P0CP78	PPIB_CRYNJ	5, ., 2, ., 1, ., 8	0.7167	0.7046	0.7229	yes	no
P0CP79	PPIB_CRYNB	5, ., 2, ., 1, ., 8	0.7167	0.7046	0.7229	N/A	no
Q9TW32	PPIB_DICDI	5, ., 2, ., 1, ., 8	0.6149	0.7552	0.9086	yes	no
Q8X166	PPIB_ASPNG	5, ., 2, ., 1, ., 8	0.6545	0.6962	0.7783	yes	no
P34791	CP20C_ARATH	5, ., 2, ., 1, ., 8	0.7305	0.8945	0.8153	yes	no
O94273	PPIB_SCHPO	5, ., 2, ., 1, ., 8	0.6363	0.6962	0.8208	yes	no
Q6C4W6	PPIB_YARLI	5, ., 2, ., 1, ., 8	0.6184	0.7299	0.7587	yes	no
P52013	CYP5_CAEEL	5, ., 2, ., 1, ., 8	0.6607	0.7088	0.8235	yes	no
P45877	PPIC_HUMAN	5, ., 2, ., 1, ., 8	0.6890	0.6919	0.7735	yes	no
Q4I5R9	PPIB_GIBZE	5, ., 2, ., 1, ., 8	0.6107	0.7046	0.6733	yes	no
Q4WP12	PPIB_ASPFU	5, ., 2, ., 1, ., 8	0.6424	0.6962	0.7894	yes	no
Q08E11	PPIC_BOVIN	5, ., 2, ., 1, ., 8	0.6890	0.6919	0.7735	yes	no
Q5B4R3	PPIB_EMENI	5, ., 2, ., 1, ., 8	0.6213	0.7130	0.7897	yes	no
P24369	PPIB_MOUSE	5, ., 2, ., 1, ., 8	0.6292	0.7510	0.8240	yes	no
P24368	PPIB_RAT	5, ., 2, ., 1, ., 8	0.6179	0.7510	0.8240	yes	no
P24367	PPIB_CHICK	5, ., 2, ., 1, ., 8	0.6235	0.7510	0.8599	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.976
4th Layer	5.2.1.8	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_II1684 hypothetical protein; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity) (266 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	237
cd01926	164	cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik	1e-108
PLN03149	186	PLN03149, PLN03149, peptidyl-prolyl isomerase H (c	2e-86
PTZ00060	183	PTZ00060, PTZ00060, cyclophilin; Provisional	8e-79
cd00317	146	cd00317, cyclophilin, cyclophilin: cyclophilin-typ	2e-66
COG0652	158	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase	6e-64
pfam00160	144	pfam00160, Pro_isomerase, Cyclophilin type peptidy	8e-62
cd01927	148	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo	2e-61
cd01923	159	cd01923, cyclophilin_RING, cyclophilin_RING: cyclo	6e-50
cd01928	153	cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3	5e-49
cd01922	146	cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY	6e-49
cd01925	171	cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC	7e-37
PTZ00221	249	PTZ00221, PTZ00221, cyclophilin; Provisional	1e-29
cd01921	166	cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph	2e-29
cd01920	155	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP	2e-21
PRK10791	164	PRK10791, PRK10791, peptidyl-prolyl cis-trans isom	2e-16
cd01924	176	cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40	1e-12
PRK10903	190	PRK10903, PRK10903, peptidyl-prolyl cis-trans isom	5e-11

>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

 Score =  307 bits (789), Expect = e-108
 Identities = 116/164 (70%), Positives = 132/164 (80%), Gaps = 6/164 (3%)

Query: 73  KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKG-----YGYKGCSFHRIIKD 127
           KVFFD+ IGG+PAGRIVM LF DVVPKTAENFRALCTGEKG     +GYKG +FHR+I D
Sbjct: 2   KVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPD 61

Query: 128 FMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKT 187
           FMIQGGDFT G+GTGG SIYG  F DE+F LKH GPG+LSMANAGPNTNGSQFFI TVKT
Sbjct: 62  FMIQGGDFTRGNGTGGKSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKT 121

Query: 188 PWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSG 231
           PWLD +HVVFG V++GMDVV+K+E+V +     PK    I + G
Sbjct: 122 PWLDGKHVVFGKVVEGMDVVKKIENVGSGN-GKPKKKVVIADCG 164

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164

>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional

 Score =  254 bits (650), Expect = 2e-86
 Identities = 109/166 (65%), Positives = 125/166 (75%), Gaps = 6/166 (3%)

Query: 74  VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGE-----KGYGYKGCSFHRIIKDF 128
           VFFDV IGG PAGRI M LF D+ PKTAENFR  CTGE        GYKGC FHR+IKDF
Sbjct: 21  VFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDF 80

Query: 129 MIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 188
           MIQGGDF +GDGTG +SIYGS FEDE+F+ KH GPG+LSMAN+GPNTNG QFFI   K  
Sbjct: 81  MIQGGDFLKGDGTGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCD 140

Query: 189 WLDNRHVVFGHVI-DGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           WLDN+HVVFG V+ DG+ VVRK+E+V T   + PK+ C I   GE+
Sbjct: 141 WLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISECGEM 186

Length = 186

>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional

 Score =  234 bits (599), Expect = 8e-79
 Identities = 105/167 (62%), Positives = 117/167 (70%), Gaps = 7/167 (4%)

Query: 73  KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGE------KGYGYKGCSFHRIIK 126
           KVFFD+ I   PAGRIV  LF DV PKTAENFRALC G+      K   YKG  FHRII 
Sbjct: 17  KVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIP 76

Query: 127 DFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVK 186
            FM QGGD T  +GTGG SIYG  F DE+F LKH  PG+LSMANAGPNTNGSQFFI TV 
Sbjct: 77  QFMCQGGDITNHNGTGGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVP 136

Query: 187 TPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
            PWLD +HVVFG VI+GM+VVR +E   T  + YPK P  + + GEL
Sbjct: 137 CPWLDGKHVVFGKVIEGMEVVRAMEKEGTQ-SGYPKKPVVVTDCGEL 182

Length = 183

>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

 Score =  201 bits (514), Expect = 2e-66
 Identities = 78/145 (53%), Positives = 90/145 (62%), Gaps = 6/145 (4%)

Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS 145
           GRIV+ L+GD  PKT ENF +L  G     Y G +FHR+I  FMIQGGD T   G G   
Sbjct: 7   GRIVIELYGDEAPKTVENFLSLARGG---FYDGTTFHRVIPGFMIQGGDPTGTGGGGSGP 63

Query: 146 IYGSSFEDESFVLK-HVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 204
            Y   F DE+F LK H   G LSMANAGPNTNGSQFFI T  TP LD +H VFG V++GM
Sbjct: 64  GY--KFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGM 121

Query: 205 DVVRKLESVETSRTDYPKVPCRIIN 229
           DVV K+E  +T     P  P  I +
Sbjct: 122 DVVDKIERGDTDENGRPIKPVTISD 146

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. . Length = 146

>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

 Score =  195 bits (499), Expect = 6e-64
 Identities = 72/162 (44%), Positives = 91/162 (56%), Gaps = 13/162 (8%)

Query: 80  IGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGD 139
           I     G I + L+ D  PKT  NF  L    K   Y G  FHR+I  FMIQGGD T GD
Sbjct: 3   ILETNKGDITIELYPDKAPKTVANFLQLV---KEGFYDGTIFHRVIPGFMIQGGDPTGGD 59

Query: 140 GTGGISIYGSSFEDESFVLKH--VGPGVLSMANAG-PNTNGSQFFICTVKTPWLDNRHVV 196
           GTGG       F+DE+F L       G LSMA AG PN+NGSQFFI  V  P+LD ++ V
Sbjct: 60  GTGGPGP---PFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTV 116

Query: 197 FGHVIDGMDVVRKLESVET----SRTDYPKVPCRIINSGELP 234
           FG V++GMDVV K+++ +T       D P  P +I++   + 
Sbjct: 117 FGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVKIVE 158

Length = 158

>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

 Score =  189 bits (483), Expect = 8e-62
 Identities = 73/155 (47%), Positives = 87/155 (56%), Gaps = 12/155 (7%)

Query: 75  FFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGD 134
           F D+       GRIV+ LFGD  PKT ENF +LC  +KG+ Y G  FHR+I  FMIQGGD
Sbjct: 1   FLDITTN---LGRIVIELFGDEAPKTVENFLSLC--KKGF-YDGTIFHRVIPGFMIQGGD 54

Query: 135 FTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRH 194
            T     G  SI      DE         G LSMA +GPN+ GSQFFI     P LD  +
Sbjct: 55  PTGPGTGGKRSI-----PDEFVSKLKHKRGTLSMARSGPNSAGSQFFITLGDAPHLDGGY 109

Query: 195 VVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN 229
            VFG V++GMDVV K+E VET   D P    +I +
Sbjct: 110 TVFGRVVEGMDVVEKIEKVETD-GDRPLKDVKITS 143

The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144

>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

 Score =  189 bits (481), Expect = 2e-61
 Identities = 86/145 (59%), Positives = 99/145 (68%), Gaps = 5/145 (3%)

Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS 145
           G I + LF +  PKT ENF        GY Y    FHR+IK FMIQ GD T GDGTGG S
Sbjct: 7   GDIHIRLFPEEAPKTVENFTTHA--RNGY-YNNTIFHRVIKGFMIQTGDPT-GDGTGGES 62

Query: 146 IYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 204
           I+G  FEDE S  LKH  P  LSMANAGPNTNGSQFFI TV TPWLDN+H VFG V+ GM
Sbjct: 63  IWGKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGM 122

Query: 205 DVVRKLESVETSRTDYPKVPCRIIN 229
           DVV+++E+V+T + D P    +IIN
Sbjct: 123 DVVQRIENVKTDKNDRPYEDIKIIN 147

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. Length = 148

>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

 Score =  160 bits (406), Expect = 6e-50
 Identities = 74/147 (50%), Positives = 92/147 (62%), Gaps = 7/147 (4%)

Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS 145
           G + + L  D  PK  ENF  LC  +KGY Y G  FHR I++FMIQGGD T G G GG S
Sbjct: 9   GDLNLELHCDKAPKACENFIKLC--KKGY-YDGTIFHRSIRNFMIQGGDPT-GTGRGGES 64

Query: 146 IYGSSFEDESFV--LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDG 203
           I+G  F+DE F   L H G GVLSMAN+GPNTNGSQFFI       LD +H VFG V+ G
Sbjct: 65  IWGKPFKDE-FKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGG 123

Query: 204 MDVVRKLESVETSRTDYPKVPCRIINS 230
           ++ +  +E+V    TD PK   +I ++
Sbjct: 124 LETLEAMENVPDPGTDRPKEEIKIEDT 150

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination. Length = 159

>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like

 Score =  157 bits (400), Expect = 5e-49
 Identities = 76/143 (53%), Positives = 86/143 (60%), Gaps = 5/143 (3%)

Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS 145
           G I + LF D  PK  ENF ALC    GY Y GC FHR IK FM+Q GD T G G GG S
Sbjct: 10  GDIKIELFCDDCPKACENFLALCAS--GY-YNGCIFHRNIKGFMVQTGDPT-GTGKGGES 65

Query: 146 IYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 204
           I+G  FEDE    LKH   GV+SMAN GPNTNGSQFFI   K P LD ++ VFG VIDG 
Sbjct: 66  IWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGF 125

Query: 205 DVVRKLESVETSRTDYPKVPCRI 227
           + +  LE +   +   P    RI
Sbjct: 126 ETLDTLEKLPVDKKYRPLEEIRI 148

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known. Length = 153

>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

 Score =  157 bits (398), Expect = 6e-49
 Identities = 79/144 (54%), Positives = 93/144 (64%), Gaps = 6/144 (4%)

Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS 145
           G I + L+ +  PKT +NF  L    +GY Y G  FHR+IKDFMIQGGD T G G GG S
Sbjct: 7   GEITLELYWNHAPKTCKNFYELAK--RGY-YNGTIFHRLIKDFMIQGGDPT-GTGRGGAS 62

Query: 146 IYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 204
           IYG  FEDE    LKH G G+LSMANAGPNTNGSQFFI    TPWLD +H +FG V  GM
Sbjct: 63  IYGKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGM 122

Query: 205 DVVRKLESVETSRTDYPKVPCRII 228
            V+  +  V+T  TD P    +I+
Sbjct: 123 KVIENMVEVQTQ-TDRPIDEVKIL 145

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. Length = 146

>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

 Score =  127 bits (320), Expect = 7e-37
 Identities = 67/156 (42%), Positives = 88/156 (56%), Gaps = 8/156 (5%)

Query: 85  AGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI 144
           AG I + L+    PK   NF  LC   +GY Y    FHR++  F+IQGGD T G GTGG 
Sbjct: 14  AGDIDIELWSKEAPKACRNFIQLCL--EGY-YDNTIFHRVVPGFIIQGGDPT-GTGTGGE 69

Query: 145 SIYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVI-D 202
           SIYG  F+DE    L+    G++ MANAG ++NGSQFF    K   L+N+H +FG V  D
Sbjct: 70  SIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGD 129

Query: 203 GMDVVRKLESVETSRTDYPKVPCRIINS--GELPLD 236
            +  + KL  VET + + P  P +I +    E P D
Sbjct: 130 TIYNLLKLAEVETDKDERPVYPPKITSVEVLENPFD 165

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding. Length = 171

>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional

 Score =  110 bits (277), Expect = 1e-29
 Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 13/172 (7%)

Query: 71  TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKG--------YGYKGCSFH 122
           + + F D+ IG   AGR+V  LF DVVP+T ENFRAL TG  G          Y     H
Sbjct: 52  SCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVH 111

Query: 123 RI-IKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFF 181
            +   + +I  G+      +  +S  G+   DE +  +H   G+L+M + GP+T+GS F 
Sbjct: 112 HVDRNNNIIVLGELD----SFNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFG 167

Query: 182 ICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           I    +P LD + VVFG  +D + ++ KLES+       P +P  +   G L
Sbjct: 168 ITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTVSFCGAL 219

Length = 249

>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

 Score =  107 bits (270), Expect = 2e-29
 Identities = 58/135 (42%), Positives = 73/135 (54%), Gaps = 15/135 (11%)

Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS 145
           G +V+ LF D  P    NF  LC   K   Y  C F+ + KDF+ Q GD T G G GG S
Sbjct: 7   GDLVIDLFTDECPLACLNFLKLC---KLKYYNFCLFYNVQKDFIAQTGDPT-GTGAGGES 62

Query: 146 IYGSS-------FEDESFV--LKHVGPGVLSMANAGPNTNGSQFFICTVK-TPWLDNRHV 195
           IY          FE E  +  LKH   G +SM NAG N NGSQF+I   +   +LD +H 
Sbjct: 63  IYSQLYGRQARFFEPE-ILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHT 121

Query: 196 VFGHVIDGMDVVRKL 210
           VFG V++G DV+ K+
Sbjct: 122 VFGQVVEGFDVLEKI 136

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis. Length = 166

>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

 Score = 86.7 bits (215), Expect = 2e-21
 Identities = 55/148 (37%), Positives = 72/148 (48%), Gaps = 15/148 (10%)

Query: 85  AGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI 144
            G IV+ L+ D  P T ENF A     KG+ Y    FHR+I  F+IQGG FT        
Sbjct: 6   LGDIVVELYDDKAPITVENFLAYV--RKGF-YDNTIFHRVISGFVIQGGGFTPD---LAQ 59

Query: 145 SIYGSSFEDES-FVLKHVGPGVLSMA-NAGPNTNGSQFFICTVKTPWLDNR-----HVVF 197
                  ++E+   L +   G ++MA    P++  SQFFI       LD +     + VF
Sbjct: 60  KETLKPIKNEAGNGLSNTR-GTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVF 118

Query: 198 GHVIDGMDVVRKLESVET-SRTDYPKVP 224
           G V +GMDVV K+  VET S   Y  VP
Sbjct: 119 GEVTEGMDVVDKIAGVETYSFGSYQDVP 146

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding. Length = 155

>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

 Score = 73.3 bits (180), Expect = 2e-16
 Identities = 51/150 (34%), Positives = 72/150 (48%), Gaps = 19/150 (12%)

Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS 145
           G IV+  F D  P+T +NF   C   +G+ Y    FHR+I  FMIQGG F  G       
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYCR--EGF-YNNTIFHRVINGFMIQGGGFEPGMKQKATK 65

Query: 146 IYGSSFEDESFVLKHVGPGVLSMANAG-PNTNGSQFFICTVKTPWLDNR--------HVV 196
                 ++E+        G L+MA    P++  +QFFI  V   +L+          + V
Sbjct: 66  ---EPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCV 122

Query: 197 FGHVIDGMDVVRKLESVETSRT----DYPK 222
           F  V++GMDVV K++ V T R+    D PK
Sbjct: 123 FAEVVEGMDVVDKIKGVATGRSGMHQDVPK 152

Length = 164

>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

 Score = 64.0 bits (156), Expect = 1e-12
 Identities = 51/160 (31%), Positives = 70/160 (43%), Gaps = 41/160 (25%)

Query: 87  RIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS- 145
            IV  L G   P TA NF  L   E+G+ Y G  FHR+   F++Q GD  +G   G    
Sbjct: 10  TIV--LDGYNAPVTAGNFVDLV--ERGF-YDGMEFHRVEGGFVVQTGD-PQGKNPGFPDP 63

Query: 146 --------------------IYGSSFE-----DESFVLKHVGPGVLSMANA--GPNTNGS 178
                               +YG + E     DE  VL     G ++MA     PN+  S
Sbjct: 64  ETGKSRTIPLEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASS 123

Query: 179 QFFI-------CTVKTPWLDNRHVVFGHVIDGMDVVRKLE 211
           QFF           +   LD R+ VFG+V DG+D++R+L+
Sbjct: 124 QFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILRELK 163

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation. Length = 176

>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

 Score = 59.5 bits (144), Expect = 5e-11
 Identities = 48/151 (31%), Positives = 67/151 (44%), Gaps = 13/151 (8%)

Query: 85  AGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI 144
           AG I + L     P + +NF        G+ Y   +FHR+I  FMIQGG FTE       
Sbjct: 37  AGNIELELNSQKAPVSVKNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFTEQMQQKKP 93

Query: 145 SIYGSSFEDESFVLKHVGPGVLSMA-NAGPNTNGSQFFICTVKTPWLDNR-----HVVFG 198
           +    +  D          G ++MA  A  ++  SQFFI      +LD+      + VFG
Sbjct: 94  NPPIKNEADNGLRNTR---GTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFG 150

Query: 199 HVIDGMDVVRKLESVETSRTD-YPKVPCRII 228
            V+ GMDV  K+  V T     Y  VP + +
Sbjct: 151 KVVKGMDVADKISQVPTHDVGPYQNVPSKPV 181

Length = 190

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	237
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	100.0
KOG0880	217	consensus Peptidyl-prolyl cis-trans isomerase [Pos	100.0
KOG0879	177	consensus U-snRNP-associated cyclophilin type pept	100.0
cd01926	164	cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph	100.0
PLN03149	186	peptidyl-prolyl isomerase H (cyclophilin H); Provi	100.0
PTZ00221	249	cyclophilin; Provisional	100.0
KOG0111	298	consensus Cyclophilin-type peptidyl-prolyl cis-tra	100.0
PTZ00060	183	cyclophilin; Provisional	100.0
KOG0881	164	consensus Cyclophilin type peptidyl-prolyl cis-tra	100.0
COG0652	158	PpiB Peptidyl-prolyl cis-trans isomerase (rotamase	100.0
cd01923	159	cyclophilin_RING cyclophilin_RING: cyclophilin-typ	100.0
cd01927	148	cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ	100.0
cd01928	153	Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro	100.0
cd01921	166	cyclophilin_RRM cyclophilin_RRM: cyclophilin-type	100.0
cd01922	146	cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c	100.0
KOG0883	518	consensus Cyclophilin type, U box-containing pepti	100.0
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	100.0
cd01925	171	cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like:	100.0
PRK10903	190	peptidyl-prolyl cis-trans isomerase A (rotamase A)	100.0
KOG0865	167	consensus Cyclophilin type peptidyl-prolyl cis-tra	100.0
PRK10791	164	peptidyl-prolyl cis-trans isomerase B (rotamase B)	100.0
KOG0884	161	consensus Similar to cyclophilin-type peptidyl-pro	100.0
cd01920	155	cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc	100.0
PF00160	155	Pro_isomerase: Cyclophilin type peptidyl-prolyl ci	100.0
cd00317	146	cyclophilin cyclophilin: cyclophilin-type peptidyl	100.0
cd01924	176	cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc	100.0
KOG0885	439	consensus Peptidyl-prolyl cis-trans isomerase [Pos	100.0
KOG0415	479	consensus Predicted peptidyl prolyl cis-trans isom	100.0
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.5
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	96.25
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	96.24
PRK00969	508	hypothetical protein; Provisional	96.21
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	96.19
PRK00969	508	hypothetical protein; Provisional	95.54
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	94.27
PF12903	147	DUF3830: Protein of unknown function (DUF3830); In	93.31

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7e-61  Score=430.82  Aligned_cols=166  Identities=66%  Similarity=1.076  Sum_probs=162.3

Q ss_pred             cceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCc--------ccCCCEEEEEEcCcEEEeCCCCCCCCCC
Q 026524           71 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGY--------GYKGCSFHRIIKDFMIQGGDFTEGDGTG  142 (237)
Q Consensus        71 ~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~--------~Y~g~~f~Rii~~~~iqgGd~~~~~g~g  142 (237)
                      +++|||||+|++++.||||||||.|+||+||+||+.||+|++|.        +|+|+.||||+++|||||||++.++|+|
T Consensus         8 ~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtG   87 (372)
T KOG0546|consen    8 NPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTG   87 (372)
T ss_pred             CceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCC
Confidence            78999999999999999999999999999999999999999974        6999999999999999999999999999


Q ss_pred             cccccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCC
Q 026524          143 GISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPK  222 (237)
Q Consensus       143 g~s~~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~  222 (237)
                      |+||||..|+||+|.++|+++++|||||.||||||||||||+.++|||||+|+|||+||.|++||+.|+.+.++..++|.
T Consensus        88 GeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~  167 (372)
T KOG0546|consen   88 GESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPL  167 (372)
T ss_pred             cccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEeeEEeeCC
Q 026524          223 VPCRIINSGELPLD  236 (237)
Q Consensus       223 ~~v~I~~cG~l~~~  236 (237)
                      .+|+|.+||+|...
T Consensus       168 ~dV~I~dCGel~~~  181 (372)
T KOG0546|consen  168 ADVVISDCGELVKK  181 (372)
T ss_pred             cceEeccccccccc
Confidence            99999999999754

>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.1e-60  Score=394.41  Aligned_cols=172  Identities=70%  Similarity=1.189  Sum_probs=168.3

Q ss_pred             hccccccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhc-cCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCc
Q 026524           65 ELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCT-GEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGG  143 (237)
Q Consensus        65 ~~~~~~~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~-g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg  143 (237)
                      +.+++++++|||||+++++..|||+|+||++.+|+||+||.+||+ ++++++|.|++||||+|||||||||++.++|+|+
T Consensus        33 ~~~p~vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g~gtGg  112 (217)
T KOG0880|consen   33 EPGPKVTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKGDGTGG  112 (217)
T ss_pred             CCCCcceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccCCCCCC
Confidence            467889999999999999999999999999999999999999999 8899999999999999999999999999999999


Q ss_pred             ccccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCC
Q 026524          144 ISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKV  223 (237)
Q Consensus       144 ~s~~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~  223 (237)
                      .++||+.|+|||+.++|+++|.|||||.|||+||||||||+..++|||++|+|||||++|||+|.+|+.++||++++|.+
T Consensus       113 ~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e  192 (217)
T KOG0880|consen  113 KSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLE  192 (217)
T ss_pred             eEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEeeEEeeCC
Q 026524          224 PCRIINSGELPLD  236 (237)
Q Consensus       224 ~v~I~~cG~l~~~  236 (237)
                      +|+|.+||+|+.+
T Consensus       193 ~v~I~~~g~l~~~  205 (217)
T KOG0880|consen  193 DVVIANCGELPVE  205 (217)
T ss_pred             cEEEeecCccccc
Confidence            9999999999764

>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.1e-53  Score=333.03  Aligned_cols=164  Identities=61%  Similarity=1.068  Sum_probs=159.0

Q ss_pred             ccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCC-----CcccCCCEEEEEEcCcEEEeCCCCCCCCCCcc
Q 026524           70 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEK-----GYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI  144 (237)
Q Consensus        70 ~~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~-----g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~  144 (237)
                      .++.|||||++++.++|||.||||.|.+|+|++||++.|+|+.     ..+|+++.|||++++|||||||+..++|+|-.
T Consensus         9 ~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG~~   88 (177)
T KOG0879|consen    9 NNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTGVA   88 (177)
T ss_pred             CCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCceEE
Confidence            3889999999999999999999999999999999999999963     24799999999999999999999999999999


Q ss_pred             cccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCC
Q 026524          145 SIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVP  224 (237)
Q Consensus       145 s~~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~  224 (237)
                      ++|+.+|+||++.++|..+|+|||||+|+++||.|||||..++.|||++|+|||+|++|+.++++||.+|+.+|++|+-+
T Consensus        89 sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPKl~  168 (177)
T KOG0879|consen   89 SIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPKLP  168 (177)
T ss_pred             EEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeeEEe
Q 026524          225 CRIINSGEL  233 (237)
Q Consensus       225 v~I~~cG~l  233 (237)
                      |.|..||++
T Consensus       169 v~i~qCGem  177 (177)
T KOG0879|consen  169 VVIVQCGEM  177 (177)
T ss_pred             EEEeecccC
Confidence            999999974

>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

Probab=100.00  E-value=1.9e-49  Score=328.97  Aligned_cols=159  Identities=73%  Similarity=1.257  Sum_probs=151.4

Q ss_pred             ceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCC-----cccCCCEEEEEEcCcEEEeCCCCCCCCCCcccc
Q 026524           72 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKG-----YGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISI  146 (237)
Q Consensus        72 ~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g-----~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~  146 (237)
                      ++|||||++++++.|+|+||||.+.||++|+||++||+++++     +.|+++.||||+|+|+||+||+..+++.++.++
T Consensus         1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~   80 (164)
T cd01926           1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKSI   80 (164)
T ss_pred             CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCCCcc
Confidence            579999999999999999999999999999999999987666     239999999999999999999887888889999


Q ss_pred             cCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeE
Q 026524          147 YGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCR  226 (237)
Q Consensus       147 ~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~  226 (237)
                      ++..+++|...+.|.++|+|+||+.++++++|||||+|.++++||++|+|||||++|||||++|++++++ +++|.++|+
T Consensus        81 ~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~~i~  159 (164)
T cd01926          81 YGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKKKVV  159 (164)
T ss_pred             cCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcCCeE
Confidence            9999999988899999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             EEeeE
Q 026524          227 IINSG  231 (237)
Q Consensus       227 I~~cG  231 (237)
                      |.+||
T Consensus       160 I~~cG  164 (164)
T cd01926         160 IADCG  164 (164)
T ss_pred             EEECC
Confidence            99998

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl

>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional

Probab=100.00  E-value=8.6e-49  Score=331.35  Aligned_cols=163  Identities=67%  Similarity=1.188  Sum_probs=153.8

Q ss_pred             cceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCC---C--cccCCCEEEEEEcCcEEEeCCCCCCCCCCccc
Q 026524           71 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEK---G--YGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS  145 (237)
Q Consensus        71 ~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~---g--~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s  145 (237)
                      ++++||||++++++.|||+||||.+.||+||+||++||+|+.   +  .+|+++.||||+|+|+|||||+..+++.++.+
T Consensus        18 ~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~~~   97 (186)
T PLN03149         18 NPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVS   97 (186)
T ss_pred             CCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCccc
Confidence            568999999999999999999999999999999999998643   2  24999999999999999999988788999999


Q ss_pred             ccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEE-cCHHHHHHhhcCCCCCCCCCCCC
Q 026524          146 IYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVI-DGMDVVRKLESVETSRTDYPKVP  224 (237)
Q Consensus       146 ~~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~Vi-eG~dvl~~I~~~~t~~~~~P~~~  224 (237)
                      +|+..|++|.+.+.|.++|+|+|++.++++++|||||++.++|+||++|+|||+|+ +|||||++|++++++++++|.++
T Consensus        98 ~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~  177 (186)
T PLN03149         98 IYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLA  177 (186)
T ss_pred             ccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCC
Confidence            99999999988889999999999999999999999999999999999999999999 89999999999999999999999


Q ss_pred             eEEEeeEEe
Q 026524          225 CRIINSGEL  233 (237)
Q Consensus       225 v~I~~cG~l  233 (237)
                      |+|.+||++
T Consensus       178 i~I~~cG~~  186 (186)
T PLN03149        178 CVISECGEM  186 (186)
T ss_pred             eEEEeCEeC
Confidence            999999985

>PTZ00221 cyclophilin; Provisional

Probab=100.00  E-value=2.7e-48  Score=339.94  Aligned_cols=163  Identities=36%  Similarity=0.592  Sum_probs=150.9

Q ss_pred             cccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCc--------ccCCCEEEEEEcC-cEEEeCCCCCCC
Q 026524           69 KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGY--------GYKGCSFHRIIKD-FMIQGGDFTEGD  139 (237)
Q Consensus        69 ~~~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~--------~Y~g~~f~Rii~~-~~iqgGd~~~~~  139 (237)
                      ..+++||||+++++++.|+|+||||.+.||+||+||++||+|+++.        +|+|+.||||+++ ++||+||+..  
T Consensus        50 ~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~--  127 (249)
T PTZ00221         50 QNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS--  127 (249)
T ss_pred             CCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC--
Confidence            3478999999999999999999999999999999999999876542        3999999999985 8999999863  


Q ss_pred             CCCcccccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCC
Q 026524          140 GTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTD  219 (237)
Q Consensus       140 g~gg~s~~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~  219 (237)
                        ++.+++|..|++|++.++|+++|+|+|++.|+++|||||||||.++|+||++|+|||+|++|||||++|++++++.++
T Consensus       128 --~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~g  205 (249)
T PTZ00221        128 --FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVG  205 (249)
T ss_pred             --CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCC
Confidence              234677899999999999999999999999999999999999999999999999999999999999999999999899


Q ss_pred             CCCCCeEEEeeEEeeC
Q 026524          220 YPKVPCRIINSGELPL  235 (237)
Q Consensus       220 ~P~~~v~I~~cG~l~~  235 (237)
                      +|.++|+|.+||+|..
T Consensus       206 rP~~~V~I~~Cgvl~~  221 (249)
T PTZ00221        206 RPLLPVTVSFCGALTG  221 (249)
T ss_pred             CCCCCeEEEECeEecC
Confidence            9999999999999964

>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.4e-50  Score=338.28  Aligned_cols=164  Identities=62%  Similarity=1.079  Sum_probs=160.0

Q ss_pred             ccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCC
Q 026524           70 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGS  149 (237)
Q Consensus        70 ~~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~  149 (237)
                      -++.||+||.|+....|||+++|..+..|+|++||..||+|++||+|+|+.||||+|.||+||||++.++|+||.+|||.
T Consensus       135 ~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggksiygk  214 (298)
T KOG0111|consen  135 ENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIYGK  214 (298)
T ss_pred             hChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCcccccc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEe
Q 026524          150 SFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN  229 (237)
Q Consensus       150 ~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~  229 (237)
                      .|.||+|.++|..+|+|+|||+|+|+|||||||++..+.|||++|+|||.|++||+||+++++..+. .++|.+.|+|.+
T Consensus       215 kfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsk-sgkp~qkv~i~~  293 (298)
T KOG0111|consen  215 KFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSK-SGKPQQKVKIVE  293 (298)
T ss_pred             cccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCC-CCCcceEEEEEe
Confidence            9999999999999999999999999999999999999999999999999999999999999999665 899999999999


Q ss_pred             eEEee
Q 026524          230 SGELP  234 (237)
Q Consensus       230 cG~l~  234 (237)
                      ||+++
T Consensus       294 cge~~  298 (298)
T KOG0111|consen  294 CGEIE  298 (298)
T ss_pred             ccccC
Confidence            99874

>PTZ00060 cyclophilin; Provisional

Probab=100.00  E-value=5.3e-48  Score=325.78  Aligned_cols=162  Identities=64%  Similarity=1.077  Sum_probs=152.8

Q ss_pred             cceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccC-------CCcccCCCEEEEEEcCcEEEeCCCCCCCCCCc
Q 026524           71 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGE-------KGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGG  143 (237)
Q Consensus        71 ~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~-------~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg  143 (237)
                      +++||||+++++++.|+|+||||.+.||++|+||++||+|+       .++ |+|+.||||+|+++||+||+..+++.++
T Consensus        15 ~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~-Y~~~~fhRvi~~~~iqgGd~~~~~g~~g   93 (183)
T PTZ00060         15 RPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLH-YKGSIFHRIIPQFMCQGGDITNHNGTGG   93 (183)
T ss_pred             CCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccc-cCCeEEEEEcCCCeEEeCCccCCCCCCC
Confidence            67899999999999999999999999999999999999753       446 9999999999999999999987788899


Q ss_pred             ccccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCC
Q 026524          144 ISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKV  223 (237)
Q Consensus       144 ~s~~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~  223 (237)
                      .++++..+++|...++|..+|+|+|++.++++++|||||++.++++||++|+|||+|++|||||++|++.++. +++|.+
T Consensus        94 ~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~-~~~P~~  172 (183)
T PTZ00060         94 ESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQ-SGYPKK  172 (183)
T ss_pred             CcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCC-CCCCcC
Confidence            9999999999988899998999999999999999999999999999999999999999999999999999885 789999


Q ss_pred             CeEEEeeEEee
Q 026524          224 PCRIINSGELP  234 (237)
Q Consensus       224 ~v~I~~cG~l~  234 (237)
                      +|+|.+||+|.
T Consensus       173 ~v~I~~cg~~~  183 (183)
T PTZ00060        173 PVVVTDCGELQ  183 (183)
T ss_pred             CeEEEEeEEcC
Confidence            99999999984

>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.9e-48  Score=303.21  Aligned_cols=153  Identities=52%  Similarity=0.912  Sum_probs=145.1

Q ss_pred             ceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCC
Q 026524           72 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSF  151 (237)
Q Consensus        72 ~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~  151 (237)
                      +.|+++     |++|.|++|||-+.||+||+||.+|+  .+|| |+|..||||+++||||||||+ ++|.||.++||..|
T Consensus        10 ~~V~Le-----TsmG~i~~ElY~kHaP~TC~NF~eLa--rrgY-Yn~v~FHRii~DFmiQGGDPT-GTGRGGaSIYG~kF   80 (164)
T KOG0881|consen   10 PNVTLE-----TSMGKITLELYWKHAPRTCQNFAELA--RRGY-YNGVIFHRIIKDFMIQGGDPT-GTGRGGASIYGDKF   80 (164)
T ss_pred             CeEEEe-----ecccceehhhhhhcCcHHHHHHHHHH--hccc-ccceeeeehhhhheeecCCCC-CCCCCccccccchh
Confidence            466665     68899999999999999999999999  5999 999999999999999999998 89999999999999


Q ss_pred             CCCcc-cccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEee
Q 026524          152 EDESF-VLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINS  230 (237)
Q Consensus       152 ~de~~-~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~c  230 (237)
                      +||-. .++|...|.|+|||.|||+|||||||||.+.+|||++|++||||..||+|++++..+.|+.++||..+++|.+.
T Consensus        81 ~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kIika  160 (164)
T KOG0881|consen   81 EDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKIIKA  160 (164)
T ss_pred             hhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCccceeeEee
Confidence            99976 89999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             EEe
Q 026524          231 GEL  233 (237)
Q Consensus       231 G~l  233 (237)
                      -..
T Consensus       161 ~~~  163 (164)
T KOG0881|consen  161 YPS  163 (164)
T ss_pred             ecC
Confidence            543

>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.9e-46  Score=305.15  Aligned_cols=147  Identities=48%  Similarity=0.826  Sum_probs=134.3

Q ss_pred             CCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcccccC
Q 026524           81 GGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKH  160 (237)
Q Consensus        81 ~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~~~~h  160 (237)
                      ..|+.|+|+||||++.||+||+||++||  +.++ |+|+.||||+++|||||||++.+.+.++++   ++|++|++...|
T Consensus         4 ~~t~~G~I~ieL~~~~aP~Tv~NF~~l~--~~g~-Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~~---~~f~~E~~~~~~   77 (158)
T COG0652           4 LETNKGDITIELYPDKAPKTVANFLQLV--KEGF-YDGTIFHRVIPGFMIQGGDPTGGDGTGGPG---PPFKDENFALNG   77 (158)
T ss_pred             eeccCCCEEEEECCCcCcHHHHHHHHHH--HcCC-CCCceEEEeecCceeecCCCCCCCCCCCCC---CCCccccccccc
Confidence            4578999999999999999999999999  4888 999999999999999999999777888874   889999988777


Q ss_pred             CC--CeEEEEeeCC-CCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCC----CCCCCCCeEEEeeEEe
Q 026524          161 VG--PGVLSMANAG-PNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSR----TDYPKVPCRIINSGEL  233 (237)
Q Consensus       161 ~~--~G~lsma~~g-~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~----~~~P~~~v~I~~cG~l  233 (237)
                      .+  +|+|||||.+ ||+|+|||||++.++||||++|+|||+|++|||+|++|++.++..    .+.|..+++|.+..++
T Consensus        78 ~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~~~~~~  157 (158)
T COG0652          78 DRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVKIV  157 (158)
T ss_pred             ccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEeeeeee
Confidence            77  9999999999 999999999999999999999999999999999999999988775    3567788888887765

>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

Probab=100.00  E-value=4.7e-45  Score=301.44  Aligned_cols=149  Identities=49%  Similarity=0.804  Sum_probs=140.9

Q ss_pred             eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcc-cccCC
Q 026524           83 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLKHV  161 (237)
Q Consensus        83 t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~-~~~h~  161 (237)
                      |+.|+|+||||.+.||++|+||++||+  .|+ |+|+.||||+|+++||+||+. +++.++.++++..+++|.. .++|+
T Consensus         6 T~~G~i~ieL~~~~aP~t~~nF~~L~~--~g~-Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~~~g~~~~~E~~~~~~h~   81 (159)
T cd01923           6 TNKGDLNLELHCDKAPKACENFIKLCK--KGY-YDGTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEFKPNLSHD   81 (159)
T ss_pred             EccccEEEEEeCCCChHHHHHHHHHHh--cCc-cCCcEEEEEeCCcEEEecccC-CCCCCCccccCCccCcccccCcCcC
Confidence            589999999999999999999999994  788 999999999999999999986 6788899999999999864 67898


Q ss_pred             CCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeeEEeeC
Q 026524          162 GPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPL  235 (237)
Q Consensus       162 ~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~cG~l~~  235 (237)
                      ++|+|+|++.++++++|||||++.++|+||++|+|||||++|||+|++|++++++++++|+++|+|.+|+++.+
T Consensus        82 ~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~d  155 (159)
T cd01923          82 GRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFVD  155 (159)
T ss_pred             CCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999864

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.

>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

Probab=100.00  E-value=4.2e-45  Score=298.46  Aligned_cols=143  Identities=59%  Similarity=0.952  Sum_probs=135.7

Q ss_pred             eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcc-cccCC
Q 026524           83 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLKHV  161 (237)
Q Consensus        83 t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~-~~~h~  161 (237)
                      |+.|+|+||||.+.||++|+||++||+  .++ |+++.||||+|+|++|+||+. +++.++.++|+..|++|.. .++|.
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~~--~g~-Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~~~~~~h~   79 (148)
T cd01927           4 TTKGDIHIRLFPEEAPKTVENFTTHAR--NGY-YNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDEFSPSLKHD   79 (148)
T ss_pred             eccccEEEEEeCCCCcHHHHHHHHHhh--cCC-cCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCccccccccccCcC
Confidence            689999999999999999999999995  778 999999999999999999986 6788888999999999976 78898


Q ss_pred             CCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEe
Q 026524          162 GPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN  229 (237)
Q Consensus       162 ~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~  229 (237)
                      ++|+|+||+.++++++|||||++.++|+||++|+|||||++|||||++|++++++++++|.++|+|.+
T Consensus        80 ~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~  147 (148)
T cd01927          80 RPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN  147 (148)
T ss_pred             CCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence            89999999999999999999999999999999999999999999999999999999999999999985

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.

>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like

Probab=100.00  E-value=5.6e-45  Score=299.27  Aligned_cols=145  Identities=52%  Similarity=0.843  Sum_probs=137.2

Q ss_pred             eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcc-cccCC
Q 026524           83 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLKHV  161 (237)
Q Consensus        83 t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~-~~~h~  161 (237)
                      |+.|+|+||||++.||++|+||++||+  .++ |+|+.|||++|+|++||||+. +++.++.++++..|++|.. .++|+
T Consensus         7 T~~G~i~ieL~~~~aP~t~~nF~~L~~--~g~-Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~~~~~~~~   82 (153)
T cd01928           7 TNLGDIKIELFCDDCPKACENFLALCA--SGY-YNGCIFHRNIKGFMVQTGDPT-GTGKGGESIWGKKFEDEFRETLKHD   82 (153)
T ss_pred             EccccEEEEEcCCCCcHHHHHHHHHHh--cCc-cCCcEEEEeCCCCEEEccccC-CCCCCCCccCCCccccccccCCCcC
Confidence            689999999999999999999999995  678 999999999999999999986 6788888999999999976 57888


Q ss_pred             CCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeeE
Q 026524          162 GPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSG  231 (237)
Q Consensus       162 ~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~cG  231 (237)
                      .+|+|+||+.++++++|||||++.++|+||++|+|||+|++|||||++|++++++++++|..+|+|.+|.
T Consensus        83 ~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~  152 (153)
T cd01928          83 SRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVT  152 (153)
T ss_pred             CCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999984

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.

>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

Probab=100.00  E-value=2.5e-44  Score=298.97  Aligned_cols=149  Identities=42%  Similarity=0.673  Sum_probs=136.1

Q ss_pred             eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccC-------CCCCCCc
Q 026524           83 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYG-------SSFEDES  155 (237)
Q Consensus        83 t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g-------~~~~de~  155 (237)
                      |+.|+|+||||.+.||+||+||++||+  .++ |+|+.||||+++|+|||||+. +++.++.++++       ..+++|.
T Consensus         4 Ts~G~i~ieL~~~~aP~t~~nF~~L~~--~~~-Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~~~~~~~e~   79 (166)
T cd01921           4 TTLGDLVIDLFTDECPLACLNFLKLCK--LKY-YNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQARFFEPEI   79 (166)
T ss_pred             eccCCEEEEEcCCCCCHHHHHHHHHHh--cCC-cCCCEEEEEeCCceEEECCcC-CCCCCCcccccccccccCcccCccc
Confidence            689999999999999999999999995  778 999999999999999999986 66777777664       3466665


Q ss_pred             c-cccCCCCeEEEEeeCCCCCCCceeEEEecC-CCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeeEEe
Q 026524          156 F-VLKHVGPGVLSMANAGPNTNGSQFFICTVK-TPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL  233 (237)
Q Consensus       156 ~-~~~h~~~G~lsma~~g~~s~gSqFfItl~~-~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~cG~l  233 (237)
                      . .++|+.+|+|+||+.++++++|||||++.+ +++||++|+|||+|++|||||++|++++++++++|.++|+|.+|+++
T Consensus        80 ~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~~~~i~  159 (166)
T cd01921          80 LPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKHTHIL  159 (166)
T ss_pred             CCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEEEEE
Confidence            4 678989999999999999999999999985 89999999999999999999999999999999999999999999998


Q ss_pred             eC
Q 026524          234 PL  235 (237)
Q Consensus       234 ~~  235 (237)
                      .+
T Consensus       160 ~~  161 (166)
T cd01921         160 DD  161 (166)
T ss_pred             CC
Confidence            64

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.

>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

Probab=100.00  E-value=2.7e-44  Score=293.12  Aligned_cols=142  Identities=56%  Similarity=0.959  Sum_probs=133.6

Q ss_pred             eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCc-ccccCC
Q 026524           83 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDES-FVLKHV  161 (237)
Q Consensus        83 t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~-~~~~h~  161 (237)
                      |+.|+|+||||.+.||++|+||++||+  .++ |+++.|||++|+|++||||+. +++.++.++++..|++|. ..++|.
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~~--~g~-Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e~~~~~~h~   79 (146)
T cd01922           4 TTMGEITLELYWNHAPKTCKNFYELAK--RGY-YNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDEIHPELKHT   79 (146)
T ss_pred             eccccEEEEEcCCCCcHHHHHHHHHHh--cCC-cCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCcccccccCcCCC
Confidence            689999999999999999999999995  778 999999999999999999986 677888889999999985 478898


Q ss_pred             CCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEe
Q 026524          162 GPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN  229 (237)
Q Consensus       162 ~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~  229 (237)
                      ++|+|+|++.++++++|||||++.++|+||++|+|||+|++|||||++|++++++ +++|.++|+|.+
T Consensus        80 ~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~~  146 (146)
T cd01922          80 GAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKILK  146 (146)
T ss_pred             CCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEeC
Confidence            9999999999999999999999999999999999999999999999999999998 899999999963

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.

>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.4e-45  Score=328.42  Aligned_cols=159  Identities=47%  Similarity=0.787  Sum_probs=151.6

Q ss_pred             ccccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCccccc
Q 026524           68 AKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIY  147 (237)
Q Consensus        68 ~~~~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~  147 (237)
                      ..+..+-|..+..   +.|.|.|||++|.+|++|+||+.||  ++|| |+|+.|||.|.|||||||||+ |+|.||+|||
T Consensus       272 ~rvKkkgyvrl~T---n~G~lNlELhcd~~P~aceNFI~lc--~~gY-Ynnt~FHRsIrnFmiQGGDPT-GTG~GGeSiW  344 (518)
T KOG0883|consen  272 TRVKKKGYVRLVT---NHGPLNLELHCDYAPRACENFITLC--KNGY-YNNTIFHRSIRNFMIQGGDPT-GTGRGGESIW  344 (518)
T ss_pred             ccccccceEEEec---cCCceeeEeecCcchHHHHHHHHHH--hccc-ccchHHHHHHHHHeeeCCCCC-CCCCCCcccc
Confidence            4557788888765   7899999999999999999999999  6999 999999999999999999998 8999999999


Q ss_pred             CCCCCCCcc-cccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeE
Q 026524          148 GSSFEDESF-VLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCR  226 (237)
Q Consensus       148 g~~~~de~~-~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~  226 (237)
                      |.+|.||.. .+.|..||+|||||+|||+|||||||+..++.+||++|++||+||.|+|+|.+|++++++++++|..+|+
T Consensus       345 gKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~  424 (518)
T KOG0883|consen  345 GKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIK  424 (518)
T ss_pred             CCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceE
Confidence            999999986 7899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeEEe
Q 026524          227 IINSGEL  233 (237)
Q Consensus       227 I~~cG~l  233 (237)
                      |.+.-|.
T Consensus       425 i~~~~VF  431 (518)
T KOG0883|consen  425 IEDAIVF  431 (518)
T ss_pred             EeeeEEe
Confidence            9998775

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.9e-43  Score=324.33  Aligned_cols=157  Identities=53%  Similarity=0.831  Sum_probs=147.3

Q ss_pred             ceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCC
Q 026524           72 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSF  151 (237)
Q Consensus        72 ~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~  151 (237)
                      +++.=+-+|--|+.|+|.|.||++.||+||+||...|  ..|| |+|..||||+++||||+|||. |+|+||++|||..|
T Consensus       400 ~~~l~~~aiihtt~gdi~~kl~p~ecpktvenf~th~--rngy-y~~~~fhriik~fmiqtgdp~-g~gtggesiwg~df  475 (558)
T KOG0882|consen  400 NKLLGKAAIIHTTQGDIHIKLYPEECPKTVENFTTHS--RNGY-YDNHTFHRIIKGFMIQTGDPL-GDGTGGESIWGKDF  475 (558)
T ss_pred             ceecccceEEEecccceEEEecccccchhhhhhhccc--cCcc-ccCcchHHhhhhheeecCCCC-CCCCCCcccccccc
Confidence            3444455566789999999999999999999999999  5999 999999999999999999998 89999999999999


Q ss_pred             CCCcc-cccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEee
Q 026524          152 EDESF-VLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINS  230 (237)
Q Consensus       152 ~de~~-~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~c  230 (237)
                      +||.. .+.|+++-+|||||.|||+||||||||+.++||||++|+|||||+.||||+++|+++.|++++||.++|.|.+-
T Consensus       476 edefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iini  555 (558)
T KOG0882|consen  476 EDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINI  555 (558)
T ss_pred             hhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEE
Confidence            99987 79999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             EE
Q 026524          231 GE  232 (237)
Q Consensus       231 G~  232 (237)
                      -+
T Consensus       556 sv  557 (558)
T KOG0882|consen  556 SV  557 (558)
T ss_pred             ec
Confidence            43

>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

Probab=100.00  E-value=5.6e-42  Score=286.20  Aligned_cols=148  Identities=44%  Similarity=0.733  Sum_probs=138.7

Q ss_pred             eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcc-cccCC
Q 026524           83 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLKHV  161 (237)
Q Consensus        83 t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~-~~~h~  161 (237)
                      |+.|+|+||||.+.+|+||+||++||+  +++ |+|+.|||++|+|+|||||+. +++.++.++|+..|++|.. .+.|+
T Consensus        12 Ts~G~i~ieL~~~~~P~t~~nF~~L~~--~~~-Y~~~~f~Rvi~~f~iQgGd~~-~~g~g~~s~~g~~~~~E~~~~~~~~   87 (171)
T cd01925          12 TTAGDIDIELWSKEAPKACRNFIQLCL--EGY-YDNTIFHRVVPGFIIQGGDPT-GTGTGGESIYGEPFKDEFHSRLRFN   87 (171)
T ss_pred             EccccEEEEEeCCCChHHHHHHHHHHh--cCC-CCCCEEEEEcCCcEEEccccC-CCCccCcccCCCccCcccccCcCCC
Confidence            588999999999999999999999995  778 999999999999999999986 6788889999999999876 57788


Q ss_pred             CCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEE-cCHHHHHHhhcCCCCCCCCCCCCeEEEeeEEee
Q 026524          162 GPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVI-DGMDVVRKLESVETSRTDYPKVPCRIINSGELP  234 (237)
Q Consensus       162 ~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~Vi-eG~dvl~~I~~~~t~~~~~P~~~v~I~~cG~l~  234 (237)
                      ++|+|+||+.++++++|||||++.++++||++|+|||+|+ +++++|++|++++++++++|.++|+|.+|+++.
T Consensus        88 ~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~i~~  161 (171)
T cd01925          88 RRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVEVLE  161 (171)
T ss_pred             CCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEEEEc
Confidence            9999999999999999999999999999999999999999 468899999999999999999999999999975

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.

>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

Probab=100.00  E-value=1e-41  Score=289.01  Aligned_cols=146  Identities=34%  Similarity=0.559  Sum_probs=129.0

Q ss_pred             eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcccccCCC
Q 026524           83 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVG  162 (237)
Q Consensus        83 t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~~~~h~~  162 (237)
                      |+.|+|+||||++.||+||+||++||  +++| |+|+.|||++|+|+|||||+....+.   ..++.++.+|.....|+.
T Consensus        35 T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Ydg~~FhRvi~~f~iQgG~~~~~~~~---~~~~~~~~~e~~~~l~~~  108 (190)
T PRK10903         35 TSAGNIELELNSQKAPVSVKNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFTEQMQQ---KKPNPPIKNEADNGLRNT  108 (190)
T ss_pred             eccccEEEEEeCCCCcHHHHHHHHHH--hcCC-cCCcEEEEEeCCceEEeCCcCCCCCC---CCCCCcccCcccccCcCC
Confidence            58899999999999999999999999  4888 99999999999999999997643221   224667888865555668


Q ss_pred             CeEEEEeeCC-CCCCCceeEEEecCCCCCCC-----CCeEEEEEEcCHHHHHHhhcCCCCC----CCCCCCCeEEEeeEE
Q 026524          163 PGVLSMANAG-PNTNGSQFFICTVKTPWLDN-----RHVVFGHVIDGMDVVRKLESVETSR----TDYPKVPCRIINSGE  232 (237)
Q Consensus       163 ~G~lsma~~g-~~s~gSqFfItl~~~~~ld~-----~~~vFG~VieG~dvl~~I~~~~t~~----~~~P~~~v~I~~cG~  232 (237)
                      +|+|+||+.+ +++++|||||++.++++||+     +|+|||+|++|||||++|+++++++    +++|.++|+|.+|++
T Consensus       109 ~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~v  188 (190)
T PRK10903        109 RGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKV  188 (190)
T ss_pred             CcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCeEEEEEEE
Confidence            9999999965 99999999999999999984     8999999999999999999999976    579999999999998


Q ss_pred             ee
Q 026524          233 LP  234 (237)
Q Consensus       233 l~  234 (237)
                      ++
T Consensus       189 ~~  190 (190)
T PRK10903        189 LP  190 (190)
T ss_pred             eC
Confidence            75

>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.6e-42  Score=286.89  Aligned_cols=163  Identities=65%  Similarity=1.135  Sum_probs=156.1

Q ss_pred             ccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEE---EEcCcEEEeCCCCCCCCCCcccc
Q 026524           70 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHR---IIKDFMIQGGDFTEGDGTGGISI  146 (237)
Q Consensus        70 ~~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~R---ii~~~~iqgGd~~~~~g~gg~s~  146 (237)
                      ++++||||++++++++|+++++||.|..|+|++||..||+|+++++|+++.|||   .+++||+||||++.++++++.++
T Consensus         2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSi   81 (167)
T KOG0865|consen    2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSI   81 (167)
T ss_pred             CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEe
Confidence            478999999999999999999999999999999999999999999999999999   34479999999999999999999


Q ss_pred             cCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeE
Q 026524          147 YGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCR  226 (237)
Q Consensus       147 ~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~  226 (237)
                      |++.|+||++.++|..+|+|+|||.||++|||||||++....|||++|+|||+|.+||+++++|+.. ..++++|..+|.
T Consensus        82 y~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~-gs~~gk~~~~i~  160 (167)
T KOG0865|consen   82 YGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERF-GSRNGKTSKKIT  160 (167)
T ss_pred             cccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhcc-CCcCCcccccEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999996 445999999999


Q ss_pred             EEeeEEe
Q 026524          227 IINSGEL  233 (237)
Q Consensus       227 I~~cG~l  233 (237)
                      |.+||+|
T Consensus       161 i~dcg~l  167 (167)
T KOG0865|consen  161 IADCGQL  167 (167)
T ss_pred             EecCCcC
Confidence            9999986

>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

Probab=100.00  E-value=5.2e-41  Score=278.69  Aligned_cols=145  Identities=36%  Similarity=0.585  Sum_probs=125.1

Q ss_pred             eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcccccCCC
Q 026524           83 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVG  162 (237)
Q Consensus        83 t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~~~~h~~  162 (237)
                      |+.|+|+|+||.+.||+||+||++||+  .+| |+++.||||+|+|+|||||+..+.+..   .++.++++|.....++.
T Consensus         6 T~~G~i~ieL~~~~aP~t~~nF~~L~~--~g~-Yd~~~fhRvi~~f~iQgGd~~~~~~~~---~~~~~~~~e~~~~~~~~   79 (164)
T PRK10791          6 TNHGDIVIKTFDDKAPETVKNFLDYCR--EGF-YNNTIFHRVINGFMIQGGGFEPGMKQK---ATKEPIKNEANNGLKNT   79 (164)
T ss_pred             EccccEEEEEeCCCCcHHHHHHHHHHh--cCC-cCCcEEEEEecCcEEEeCCcCCCCCcC---CCCCCcCCcccccccCC
Confidence            689999999999999999999999995  788 999999999999999999976443322   23566777754333447


Q ss_pred             CeEEEEeeCC-CCCCCceeEEEecCCCCCC-------C-CCeEEEEEEcCHHHHHHhhcCCCCC----CCCCCCCeEEEe
Q 026524          163 PGVLSMANAG-PNTNGSQFFICTVKTPWLD-------N-RHVVFGHVIDGMDVVRKLESVETSR----TDYPKVPCRIIN  229 (237)
Q Consensus       163 ~G~lsma~~g-~~s~gSqFfItl~~~~~ld-------~-~~~vFG~VieG~dvl~~I~~~~t~~----~~~P~~~v~I~~  229 (237)
                      +|+||||+.+ |++++|||||++.++++||       + +|+|||+|++|||||++|+++++++    +++|..+|+|.+
T Consensus        80 ~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~  159 (164)
T PRK10791         80 RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIES  159 (164)
T ss_pred             CcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCeEEEE
Confidence            9999999975 9999999999999988876       2 7999999999999999999999976    379999999999


Q ss_pred             eEEe
Q 026524          230 SGEL  233 (237)
Q Consensus       230 cG~l  233 (237)
                      |.+.
T Consensus       160 ~~i~  163 (164)
T PRK10791        160 VTVS  163 (164)
T ss_pred             EEEe
Confidence            9775

>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2e-41  Score=264.04  Aligned_cols=146  Identities=49%  Similarity=0.768  Sum_probs=138.1

Q ss_pred             eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcc-cccCC
Q 026524           83 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLKHV  161 (237)
Q Consensus        83 t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~-~~~h~  161 (237)
                      |..|+|.||||.+.+|++|+||+.||.  ..| |+++.|||-+|+|++|+||++ ..|.||.++||.+|+||.. .++|+
T Consensus         7 t~~gdikiev~~e~tpktce~~l~~~~--~~~-~n~~~~~~~~~~f~v~~~~~~-~tgrgg~siwg~~fede~~~~lkh~   82 (161)
T KOG0884|consen    7 TDVGDIKIEVFCERTPKTCENFLALCA--SDY-YNGCIFHRNIKGFMVQTGDPT-HTGRGGNSIWGKKFEDEYSEYLKHN   82 (161)
T ss_pred             eccCcEEEEEEecCChhHHHHHHHHhh--hhh-ccceeecCCCCCcEEEeCCCC-CCCCCCccccCCcchHHHHHHHhhc
Confidence            567999999999999999999999994  667 999999999999999999997 7899999999999999987 68999


Q ss_pred             CCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCC-CCCCCCeEEEeeEE
Q 026524          162 GPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRT-DYPKVPCRIINSGE  232 (237)
Q Consensus       162 ~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~-~~P~~~v~I~~cG~  232 (237)
                      .||+|+|||.||++||||||||.+..|+||-+|++||+||+|+|+|++|+++++++. .||..++.|.+..+
T Consensus        83 ~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~iti  154 (161)
T KOG0884|consen   83 VRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI  154 (161)
T ss_pred             cceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEE
Confidence            999999999999999999999999999999999999999999999999999999875 89999999988654

>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

Probab=100.00  E-value=1.5e-40  Score=273.50  Aligned_cols=141  Identities=38%  Similarity=0.530  Sum_probs=124.2

Q ss_pred             eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcccccCCC
Q 026524           83 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVG  162 (237)
Q Consensus        83 t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~~~~h~~  162 (237)
                      |+.|+|+||||.+.||+||+||++||+  .++ |+++.||||+|+|+|||||+....+.   ..++.++++|.....|+.
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~~--~g~-Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e~~~~~~~~   77 (155)
T cd01920           4 TSLGDIVVELYDDKAPITVENFLAYVR--KGF-YDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNEAGNGLSNT   77 (155)
T ss_pred             ecceeEEEEEeCCCCcHHHHHHHHHHh--cCC-CCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCcccccccCC
Confidence            689999999999999999999999994  788 99999999999999999998754322   223567777766555678


Q ss_pred             CeEEEEeeCC-CCCCCceeEEEecCCCCCCC-----CCeEEEEEEcCHHHHHHhhcCCCCCC----CCCCCCeEEEe
Q 026524          163 PGVLSMANAG-PNTNGSQFFICTVKTPWLDN-----RHVVFGHVIDGMDVVRKLESVETSRT----DYPKVPCRIIN  229 (237)
Q Consensus       163 ~G~lsma~~g-~~s~gSqFfItl~~~~~ld~-----~~~vFG~VieG~dvl~~I~~~~t~~~----~~P~~~v~I~~  229 (237)
                      +|+||||+.+ +++++|||||++.++++||+     +|+|||+|++|||||++|++++++.+    ++|..+|+|.+
T Consensus        78 ~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~~  154 (155)
T cd01920          78 RGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIES  154 (155)
T ss_pred             ceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEEE
Confidence            9999999975 89999999999999999995     79999999999999999999999874    69999999976

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.

>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms

Probab=100.00  E-value=2.7e-39  Score=264.20  Aligned_cols=150  Identities=51%  Similarity=0.845  Sum_probs=131.5

Q ss_pred             EEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCc-ccccCCCCCC
Q 026524           75 FFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGG-ISIYGSSFED  153 (237)
Q Consensus        75 ~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg-~s~~g~~~~d  153 (237)
                      ||||++++  .|+|+||||.+.||++|+||++||+  .++ |+|+.|||++|+++||+|++......+. ....+.++++
T Consensus         1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~--~~~-y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~   75 (155)
T PF00160_consen    1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCT--SGF-YDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIPD   75 (155)
T ss_dssp             EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHH--TTS-STTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBSS
T ss_pred             CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhc--ccc-cCCceeecccccceeeeeeccCCCCcccccccCcccccc
Confidence            78998866  9999999999999999999999996  667 9999999999999999999875433111 1223446888


Q ss_pred             Ccc--cccCCCCeEEEEeeCC--CCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEe
Q 026524          154 ESF--VLKHVGPGVLSMANAG--PNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN  229 (237)
Q Consensus       154 e~~--~~~h~~~G~lsma~~g--~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~  229 (237)
                      |..  .+.| .+|+|+|++.+  +++++|||||+|.++++||++|+|||+|++||+||++|++++++.  +|.++|+|.+
T Consensus        76 E~~~~~~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~~~v~I~~  152 (155)
T PF00160_consen   76 EFNPSLLKH-RRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPKQDVTISS  152 (155)
T ss_dssp             SGBTTSSSS-STTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBSSTEEEEE
T ss_pred             ccccccccc-cceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC--ccCCCeEEEE
Confidence            874  4556 89999999976  889999999999999999999999999999999999999999886  9999999999


Q ss_pred             eEE
Q 026524          230 SGE  232 (237)
Q Consensus       230 cG~  232 (237)
                      ||+
T Consensus       153 cgv  155 (155)
T PF00160_consen  153 CGV  155 (155)
T ss_dssp             EEE
T ss_pred             eEC
Confidence            997

It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....

>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

Probab=100.00  E-value=7.9e-39  Score=259.23  Aligned_cols=142  Identities=56%  Similarity=0.888  Sum_probs=128.7

Q ss_pred             eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCccccc-CC
Q 026524           83 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLK-HV  161 (237)
Q Consensus        83 t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~~~~-h~  161 (237)
                      |+.|+|+||||.+.||++|+||++||+  .++ |+++.|||++|+++||+||+....+.+  +.++..+++|..... |.
T Consensus         4 T~~G~i~IeL~~~~~P~~~~nF~~l~~--~~~-Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E~~~~~~~~   78 (146)
T cd00317           4 TTKGRIVIELYGDEAPKTVENFLSLAR--GGF-YDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDENFPLKYHH   78 (146)
T ss_pred             eccCcEEEEEcCCCChHHHHHHHHHHh--cCC-cCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCccccCcCcC
Confidence            577999999999999999999999995  666 999999999999999999987544332  355778888887655 78


Q ss_pred             CCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEe
Q 026524          162 GPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN  229 (237)
Q Consensus       162 ~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~  229 (237)
                      ++|+|+|++.++++++|||||+|.+.++||++|+|||+|++|||+|++|++.+++++++|.++|+|.+
T Consensus        79 ~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~  146 (146)
T cd00317          79 RRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD  146 (146)
T ss_pred             CCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence            89999999999999999999999999999999999999999999999999999999999999999974

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP

>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

Probab=100.00  E-value=6.8e-37  Score=256.69  Aligned_cols=129  Identities=37%  Similarity=0.593  Sum_probs=110.0

Q ss_pred             CeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCC--------------------C
Q 026524           82 GKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDG--------------------T  141 (237)
Q Consensus        82 ~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g--------------------~  141 (237)
                      .|+.|+|+||||++.||+||+||++||+  .++ |+++.||||+++|||||||+...+.                    .
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~--~g~-Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~   79 (176)
T cd01924           3 ATDNGTITIVLDGYNAPVTAGNFVDLVE--RGF-YDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEG   79 (176)
T ss_pred             ccccceEEEEEcCCCCCHHHHHHHHHHH--hCC-cCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccC
Confidence            4789999999999999999999999994  888 9999999999999999999864310                    1


Q ss_pred             CcccccCCCCC-----CCcccccCCCCeEEEEeeCC--CCCCCceeEEEec-------CCCCCCCCCeEEEEEEcCHHHH
Q 026524          142 GGISIYGSSFE-----DESFVLKHVGPGVLSMANAG--PNTNGSQFFICTV-------KTPWLDNRHVVFGHVIDGMDVV  207 (237)
Q Consensus       142 gg~s~~g~~~~-----de~~~~~h~~~G~lsma~~g--~~s~gSqFfItl~-------~~~~ld~~~~vFG~VieG~dvl  207 (237)
                      .+.++++..++     +++....|+.+|+||||+.+  +++++|||||++.       +.++||++|+|||+|++|||||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl  159 (176)
T cd01924          80 QKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDIL  159 (176)
T ss_pred             CCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHH
Confidence            12345555442     45556677789999999987  7999999999998       7899999999999999999999


Q ss_pred             HHhhcC
Q 026524          208 RKLESV  213 (237)
Q Consensus       208 ~~I~~~  213 (237)
                      ++|+..
T Consensus       160 ~~I~~g  165 (176)
T cd01924         160 RELKVG  165 (176)
T ss_pred             HhhcCC
Confidence            999754

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.

>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.5e-37  Score=275.70  Aligned_cols=157  Identities=41%  Similarity=0.704  Sum_probs=145.9

Q ss_pred             ccccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCccccc
Q 026524           68 AKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIY  147 (237)
Q Consensus        68 ~~~~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~  147 (237)
                      +..+-+|.+.     |+.|+|-||||+..||++|.||++||.  .|| |+|+.|||++|+|++|||||+ ++|+||.+||
T Consensus         9 P~ttgkvil~-----TT~G~I~iELW~kE~P~acrnFiqKOG--egy-y~nt~fhrlvp~f~~Qggdp~-~~gtGgesiy   79 (439)
T KOG0885|consen    9 PPTTGKVILK-----TTKGDIDIELWAKECPKACRNFIQLCL--EGY-YDNTEFHRLVPGFLVQGGDPT-GTGTGGESIY   79 (439)
T ss_pred             CCccceEEEE-----eccCceeeeehhhhhhHHHHHHHHHHH--hcc-ccCceeeeeccchhcccCCCC-CCCCCccccc
Confidence            3335566554     688999999999999999999999994  899 999999999999999999997 8999999999


Q ss_pred             CCCCCCCcc-cccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEE-cCHHHHHHhhcCCCCCCCCCCCCe
Q 026524          148 GSSFEDESF-VLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVI-DGMDVVRKLESVETSRTDYPKVPC  225 (237)
Q Consensus       148 g~~~~de~~-~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~Vi-eG~dvl~~I~~~~t~~~~~P~~~v  225 (237)
                      |.+|.+|.. .+.++++|+|+|||.+.+.|||||||||+++|+|+++|++||+|+ +-+-.+-+|..+.++.+.||..+-
T Consensus        80 g~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~  159 (439)
T KOG0885|consen   80 GRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPP  159 (439)
T ss_pred             cccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCCCcc
Confidence            999999987 788999999999999999999999999999999999999999999 468888999999999999999999


Q ss_pred             EEEeeEEe
Q 026524          226 RIINSGEL  233 (237)
Q Consensus       226 ~I~~cG~l  233 (237)
                      +|.+|.++
T Consensus       160 kI~s~EV~  167 (439)
T KOG0885|consen  160 KIKSVEVL  167 (439)
T ss_pred             ceeeeEee
Confidence            99999987

>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.2e-36  Score=267.28  Aligned_cols=150  Identities=41%  Similarity=0.650  Sum_probs=139.2

Q ss_pred             CeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCC-------CCCC
Q 026524           82 GKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSS-------FEDE  154 (237)
Q Consensus        82 ~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~-------~~de  154 (237)
                      .|++|+|||+||.+.+|.+|.||++||  +..| |+.|.||-|..+|.+|.|||+ |+|.||.++|+..       |+.|
T Consensus         6 eTtlGDlvIDLf~~erP~~clNFLKLC--k~KY-YN~clfh~vq~~f~aQTGDPt-GtG~GG~si~~~lyG~q~rffeaE   81 (479)
T KOG0415|consen    6 ETTLGDLVIDLFVKERPRTCLNFLKLC--KIKY-YNFCLFHTVQRDFTAQTGDPT-GTGDGGESIYGVLYGEQARFFEAE   81 (479)
T ss_pred             EeecccEEeeeecccCcHHHHHHHHHH--hHhh-cccceeeeccccceeecCCCC-CCCCCcceeeeecccccchhhhhh
Confidence            378999999999999999999999999  4778 999999999999999999998 7999999998743       5666


Q ss_pred             cc-cccCCCCeEEEEeeCCCCCCCceeEEEecC-CCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeeEE
Q 026524          155 SF-VLKHVGPGVLSMANAGPNTNGSQFFICTVK-TPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGE  232 (237)
Q Consensus       155 ~~-~~~h~~~G~lsma~~g~~s~gSqFfItl~~-~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~cG~  232 (237)
                      .. .++|.+.|+|+|++.|.|.+||||||||++ ..+||++|+|||+|.||||+|.+|+..-++++++|.++|+|.+.-+
T Consensus        82 ~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI~HTii  161 (479)
T KOG0415|consen   82 FLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRIKHTII  161 (479)
T ss_pred             hcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceeeeeeEE
Confidence            54 789999999999999999999999999987 5699999999999999999999999999999999999999999999


Q ss_pred             eeC
Q 026524          233 LPL  235 (237)
Q Consensus       233 l~~  235 (237)
                      |++
T Consensus       162 LdD  164 (479)
T KOG0415|consen  162 LDD  164 (479)
T ss_pred             ecC
Confidence            864

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=0.00011  Score=69.32  Aligned_cols=144  Identities=23%  Similarity=0.302  Sum_probs=113.0

Q ss_pred             ceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCc----ccccCC-CCCC--Cccc
Q 026524           85 AGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGG----ISIYGS-SFED--ESFV  157 (237)
Q Consensus        85 ~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg----~s~~g~-~~~d--e~~~  157 (237)
                      .--|.|+|+.+-.|.-++-|...|  ..++ +++..|-||.+.+++|.||.......+|    |+..++ .|++  .++.
T Consensus       111 ~s~IAVs~~~sg~i~VvD~~~d~~--q~~~-fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~  187 (558)
T KOG0882|consen  111 ISLIAVSLFKSGKIFVVDGFGDFC--QDGY-FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFE  187 (558)
T ss_pred             eeeEEeecccCCCcEEECCcCCcC--ccce-ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCcccccccc
Confidence            338999999999999999999999  5888 9999999999999999998653333233    222220 1222  4556


Q ss_pred             ccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeeEE
Q 026524          158 LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGE  232 (237)
Q Consensus       158 ~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~cG~  232 (237)
                      ++|. .-++.....-....+-+|++.-...+-+..+..|||++.+|-++++.|....++....|+.++.|.+...
T Consensus       188 ~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Vel  261 (558)
T KOG0882|consen  188 LKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVEL  261 (558)
T ss_pred             cccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeeh
Confidence            7774 5566666655555677899988888888899999999999999999999999999999999988877543

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=96.25  E-value=0.0097  Score=55.62  Aligned_cols=103  Identities=25%  Similarity=0.410  Sum_probs=66.4

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcccccCCCCeE
Q 026524           86 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGV  165 (237)
Q Consensus        86 G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~~~~h~~~G~  165 (237)
                      =.+.+||.++ +|++++.|++|.  +.|.     .=-....|-++           +..+......+.|++.+.  .+|.
T Consensus       203 Ty~eve~s~n-sP~saEH~lalm--edG~-----lri~~~tntfi-----------s~~~lq~~~~~~en~d~R--erG~  261 (512)
T COG4070         203 TYFEVELSRN-SPKSAEHFLALM--EDGT-----LRIDVTTNTFI-----------SDDTLQEEKVPEENFDLR--ERGA  261 (512)
T ss_pred             EEEEEEeCCC-CchhHHHHHHHh--hcce-----EEEEEecccee-----------eccccccccCChhhhhhh--hcce
Confidence            4566777766 999999999998  4554     11111122222           112334556777887654  4899


Q ss_pred             EEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhc
Q 026524          166 LSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLES  212 (237)
Q Consensus       166 lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~  212 (237)
                      +...|.|.++  -.-||--.+-+ ---.|.|.|||++||++++--++
T Consensus       262 iTvRn~Gvge--GrvYIyRedR~-ss~sHnvVGrV~eGiELid~a~e  305 (512)
T COG4070         262 ITVRNVGVGE--GRVYIYREDRP-SSLSHNVVGRVIEGIELIDLAEE  305 (512)
T ss_pred             EEEEeeeccc--ceEEEEecCCC-CccccceeeeeecceEEEEeccc
Confidence            9999977443  35688655433 22368999999999999875554

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=96.24  E-value=0.02  Score=54.90  Aligned_cols=103  Identities=22%  Similarity=0.341  Sum_probs=65.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcccccCCCCeEE
Q 026524           87 RIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVL  166 (237)
Q Consensus        87 ~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~~~~h~~~G~l  166 (237)
                      .+.+||.++ +|.+++.|+.+.  +.|. +   .+.+. .+-+|           ...+..+...+.|++..  ..+|+|
T Consensus       202 y~evE~~~~-~p~s~EH~la~~--~~G~-~---~Vd~~-tsTfi-----------~d~~L~g~~~p~En~~~--R~rGtV  260 (503)
T TIGR03268       202 YVEVELDPN-APVSVEHFLALM--EDGT-F---RVDYR-TSTFI-----------SDDSLRGLDKPEENIEK--RRRGAV  260 (503)
T ss_pred             EEEEEEcCC-CChhHHHHHHHH--hCCe-E---EEeee-ecceE-----------ecccccCccCCccccCc--ccceeE
Confidence            456676655 999999999998  4554 1   11111 01111           11233355566676643  258999


Q ss_pred             EEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcC
Q 026524          167 SMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESV  213 (237)
Q Consensus       167 sma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~  213 (237)
                      .+.+.|.+.  -..||--.+-+ ..-.|+|+|+|+.|||+++--+..
T Consensus       261 TVRn~G~G~--G~VYIYredr~-ss~sHtvVG~V~~GiELid~a~~G  304 (503)
T TIGR03268       261 TVRNSGVGE--GRVYIYREDRP-SSLSHNVVGHVTRGIELIDIAQEG  304 (503)
T ss_pred             EEEeeccCc--eeEEEEcCCCC-CCcccceeEEEecceeeeecccCC
Confidence            999987443  35788666544 334699999999999998765443

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>PRK00969 hypothetical protein; Provisional

Probab=96.21  E-value=0.018  Score=55.40  Aligned_cols=99  Identities=24%  Similarity=0.421  Sum_probs=65.4

Q ss_pred             eEEEEecCCCChhHHHHHHHHhccCCCc---ccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcccccCCCC
Q 026524           87 RIVMGLFGDVVPKTAENFRALCTGEKGY---GYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGP  163 (237)
Q Consensus        87 ~ivIeL~~d~aP~t~~NF~~Lc~g~~g~---~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~~~~h~~~  163 (237)
                      .+.+||.++ +|.+++.|+.+.  +.|.   .|.-+.|        |           ...+..|...+.|++.-  .++
T Consensus       205 y~eve~~~~-~p~s~EH~la~~--~~G~f~Vd~~tstf--------I-----------~d~~L~g~~~p~En~~~--R~~  260 (508)
T PRK00969        205 YVEVELDPG-APKSVEHFLALL--EDGTFEVDFETSTF--------I-----------ADDRLQGLKIPEENFEP--RRR  260 (508)
T ss_pred             EEEEEEcCC-CCchHHHHHHHH--hCCeEEEeeeecce--------E-----------eeccccCccCCccccCc--ccc
Confidence            456677766 999999999998  4554   1111111        1           11233355566677643  258


Q ss_pred             eEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhc
Q 026524          164 GVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLES  212 (237)
Q Consensus       164 G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~  212 (237)
                      |+|.+.+.|.+.  -..||--.+-+ -.-.|+|+|+|+.|||+++--++
T Consensus       261 GtVTVRt~G~g~--G~vYIyredr~-ss~sHtvVG~V~~GiELi~~a~~  306 (508)
T PRK00969        261 GTVTVRTAGVGV--GKVYIYREDRP-SSLSHTVVGRVTHGIELIDFAKE  306 (508)
T ss_pred             ceEEEEeeccCc--eeEEEECCCCC-CCccceeEEEEecceeeeecccC
Confidence            999999987543  35788766544 23469999999999999875544

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=96.19  E-value=0.054  Score=52.09  Aligned_cols=115  Identities=20%  Similarity=0.276  Sum_probs=66.7

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcccccCCCCeE
Q 026524           86 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGV  165 (237)
Q Consensus        86 G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~~~~h~~~G~  165 (237)
                      --|.|+||.+.||+|+..|+++. |-+-..---..+|=..++..+-=|+..          ++..+.+||..-.....|.
T Consensus       375 ~vi~IeLydd~AP~s~~yFRk~t-GL~~~~VG~L~v~F~~~d~~mFk~~~~----------~~k~LiPEN~P~~~V~ag~  443 (503)
T TIGR03268       375 KVIEIELYDDNAPRSVWYFRKFT-GLKTKPVGRLPVHFAFKEMIMFKGNKE----------LAKGLIPENTPEDKVEAGV  443 (503)
T ss_pred             hEEEEEEcccCCchHHHHHHHhc-CCcccccceeEEEEEeCCeeEeccCch----------hccccCCCCCCCCccccce
Confidence            35889999999999999999985 211110112345555666444333322          1223445555444556888


Q ss_pred             EEEeeCCCCCCCceeEEEec------CCC-CCCCCCeEEEEEEcCHHHHHHhhcC
Q 026524          166 LSMANAGPNTNGSQFFICTV------KTP-WLDNRHVVFGHVIDGMDVVRKLESV  213 (237)
Q Consensus       166 lsma~~g~~s~gSqFfItl~------~~~-~ld~~~~vFG~VieG~dvl~~I~~~  213 (237)
                      |+|-|......|- .=|-|.      |+. .+++ --++|+|+++++.|+++...
T Consensus       444 IgvTN~a~k~~G~-IGVRl~d~defGPTGE~F~g-TNIiG~Vv~~~e~Lk~~KeG  496 (503)
T TIGR03268       444 IGVTNQACKHVGM-IGVRLEDSDEFGPTGEPFSG-TNIIGRVVEGMERLKGLKEG  496 (503)
T ss_pred             EeeechhhhcCce-EEEEccCCcccCCCCCCccC-cceEEEecCChhHhcccccC
Confidence            8888754222110 112222      322 2333 45669999999999888764

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>PRK00969 hypothetical protein; Provisional

Probab=95.54  E-value=0.14  Score=49.38  Aligned_cols=114  Identities=19%  Similarity=0.250  Sum_probs=66.8

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcccccCCCCeE
Q 026524           86 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGV  165 (237)
Q Consensus        86 G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~~~~h~~~G~  165 (237)
                      --|.|+||.+.||+|+..|+++. |-+-..---..+|=..++-++--|+..          ++..+.+||..-.....|.
T Consensus       378 ~vi~IeLydd~AP~s~~yFR~~t-GL~~~~VG~L~v~F~~~d~~lFk~~~~----------~~k~liPEN~P~~~V~ag~  446 (508)
T PRK00969        378 KLIEIELYDDKAPRTVWYFRKVT-GLKTKPVGKLPVYFKYEDTYLFKGNIE----------YAKGLLPENTPEDKVKAGE  446 (508)
T ss_pred             HEEEEEEcCcCCchHHHHHHHhc-CCcccccceeEEEEEeCCeEEEccChh----------hccccCCCCCCCCccccce
Confidence            35889999999999999999986 211110112345555666555434332          1233455565555667888


Q ss_pred             EEEeeCCCCCCCceeEEEec------CCC-CCCCCCeEEEEEEcCHHHHHHhhcC
Q 026524          166 LSMANAGPNTNGSQFFICTV------KTP-WLDNRHVVFGHVIDGMDVVRKLESV  213 (237)
Q Consensus       166 lsma~~g~~s~gSqFfItl~------~~~-~ld~~~~vFG~VieG~dvl~~I~~~  213 (237)
                      |++-|......|- .=|-|.      |+. .++ .--++|+|+ ++|-|+++...
T Consensus       447 IgvTN~a~k~~G~-iGVR~~d~d~fGPTGE~F~-gTNIIGrVv-~~e~Lk~lKeG  498 (508)
T PRK00969        447 IGVTNMAAKYKGM-IGVRLSDNDEFGPTGEPFE-GTNIIGRVV-NLEKLKKLKEG  498 (508)
T ss_pred             EeeechhhhcCce-EEEEccCCcccCCCCCCcc-CceeEEEec-ChHHhcccccC
Confidence            8888754222110 112222      322 233 346779999 89999888764

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=94.27  E-value=0.19  Score=47.28  Aligned_cols=115  Identities=16%  Similarity=0.160  Sum_probs=58.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCc-EE-EeCCCCCCCCCCcccccCCCCCCCcccccCCCCe
Q 026524           87 RIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDF-MI-QGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPG  164 (237)
Q Consensus        87 ~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~-~i-qgGd~~~~~g~gg~s~~g~~~~de~~~~~h~~~G  164 (237)
                      -|.||||.+.||+++..|+++.. -...---...+|-..++. ++ --|+..          ++.-...||..-....+|
T Consensus       377 iieIELyed~APrSv~yFRr~t~-l~~kpVGkL~Vhfay~d~~~vmfegn~~----------~~K~llPEN~P~d~Ve~g  445 (512)
T COG4070         377 IIEIELYEDRAPRSVWYFRRSTG-LKTKPVGKLKVHFAYDDTYLVMFEGNAV----------LAKGLLPENTPADTVEAG  445 (512)
T ss_pred             EEEEEecCCCCchhhHHHHhhcc-cccccccceEEEEEeCCceEEEEcCChH----------HhccCCCCCCchhheecc
Confidence            48999999999999999998862 111101123445555551 12 122222          122233333322223344


Q ss_pred             EEEEeeCCCCCCCceeEEEec------CCCCCCCCCeEEEEEEcCHHHHHHhhcC
Q 026524          165 VLSMANAGPNTNGSQFFICTV------KTPWLDNRHVVFGHVIDGMDVVRKLESV  213 (237)
Q Consensus       165 ~lsma~~g~~s~gSqFfItl~------~~~~ld~~~~vFG~VieG~dvl~~I~~~  213 (237)
                      .++.-|......|. .=+-|.      ++..--..--++|+|++|.+-|..|...
T Consensus       446 ~iGvTN~a~r~~Gm-IGVRL~dsdefGPTGE~Fe~TNiIGrIveg~e~l~~ikeG  499 (512)
T COG4070         446 EIGVTNQAARHMGM-IGVRLEDSDEFGPTGEKFEGTNIIGRIVEGPERLIGIKEG  499 (512)
T ss_pred             cccccccchhccce-eEEEeccccccCCCCCccccceeehhhccChHHhcccccC
Confidence            44443322110100 011122      2222223457889999999999988764

>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins

Probab=93.31  E-value=0.57  Score=38.40  Aligned_cols=107  Identities=20%  Similarity=0.185  Sum_probs=55.8

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcC--cEEEeCCCCCCCCCCcccccCCCCCCCcccccCCCC
Q 026524           86 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKD--FMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGP  163 (237)
Q Consensus        86 G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~--~~iqgGd~~~~~g~gg~s~~g~~~~de~~~~~h~~~  163 (237)
                      -.++.+|..|.||+||+-|.+.-   -   |.+..+|-...+  .|+.-+++..           .....||... +..+
T Consensus         8 ~~~~A~l~~d~AP~Tcaa~~~~L---P---~~~~~~HarwSG~ei~~~l~~~~~-----------~~~~~EN~T~-~P~p   69 (147)
T PF12903_consen    8 VSFTARLLDDKAPKTCAAFWEAL---P---LKGKVIHARWSGEEIWIPLPDFDP-----------FEPGRENHTV-TPIP   69 (147)
T ss_dssp             EEEEEEE-TTTSHHHHHHHHHH--------EEEE-EE-SSSSSEEEEEEE--SS-----------S---S-SEES-S--T
T ss_pred             eEEEEEEcccCChHHHHHHHHhC---C---CCCcEEEEEEECcEEEEECCCcCc-----------CCCCCCcCcc-cCCC
Confidence            36889999999999999999987   2   777777766554  4555555431           1122344322 3346


Q ss_pred             eEEEEe--e-CCCC--CC-CceeEEEecC--------CCCCCCCCeEEEEEEcCHHHHHHhhc
Q 026524          164 GVLSMA--N-AGPN--TN-GSQFFICTVK--------TPWLDNRHVVFGHVIDGMDVVRKLES  212 (237)
Q Consensus       164 G~lsma--~-~g~~--s~-gSqFfItl~~--------~~~ld~~~~vFG~VieG~dvl~~I~~  212 (237)
                      |-|.+-  . ...+  .. =++.-|...-        .-++-  -.+|++|++|+|-|.++-+
T Consensus        70 Gdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~--GN~FatI~egle~la~~~~  130 (147)
T PF12903_consen   70 GDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLP--GNHFATITEGLEELAEACR  130 (147)
T ss_dssp             TEEEEE-----------E-EEEEEEE-SSS---EETTTEE----EEEEEEEEESHHHHHHHHH
T ss_pred             CcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccc--eeEEEEEcCCHHHHHHHHH
Confidence            777665  1 1111  11 1333333332        22333  3799999999998776643

The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	237
3r49_A	166	Human Cyclophilin D Complexed With Quinolin-8-Amine		2e-54
2bit_X	165	Crystal Structure Of Human Cyclophilin D At 1.7 A R		2e-54
2z6w_A	165	Crystal Structure Of Human Cyclophilin D In Complex		3e-54
3qyu_A	164	Crystal Structure Of Human Cyclophilin D At 1.54 A		3e-54
2esl_A	190	Human Cyclophilin C In Complex With Cyclosporin A L		2e-53
2rmc_A	182	Crystal Structure Of Murine Cyclophilin C Complexed		2e-52
1h0p_A	182	Cyclophilin_5 From C. Elegans Length = 182		2e-51
1dyw_A	173	Biochemical And Structural Characterization Of A Di		7e-51
4frv_A	185	Crystal Structure Of Mutated Cyclophilin B That Cau		1e-50
4fru_A	185	Crystal Structure Of Horse Wild-Type Cyclophilin B		1e-50
3ich_A	188	Crystal Structure Of Cyclophilin B At 1.2 A Resolut		1e-50
1cyn_A	178	Cyclophilin B Complexed With [d-(Cholinylester)ser8		1e-50
3rdd_A	184	Human Cyclophilin A Complexed With An Inhibitor Len		8e-50
2ck1_A	172	The Structure Of Oxidised Cyclophilin A From S. Man		2e-49
2haq_A	172	Crystal Structure Of Cyclophilin A From Leishmania		2e-49
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		3e-49
2wlw_A	165	Structure Of The N-Terminal Capsid Domain Of Hiv-2		7e-49
2rma_A	165	Crystal Structures Of Cyclophilin A Complexed With		8e-49
1bck_A	165	Human Cyclophilin A Complexed With 2-Thr Cyclospori		8e-49
5cyh_A	164	Cyclophilin A Complexed With Dipeptide Gly-Pro Leng		8e-49
1xo7_A	166	Crystal Structure Of Cyclophilin From Trypanosoma C		8e-49
1m9e_A	164	X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-		9e-49
2xgy_B	173	Complex Of Rabbit Endogenous Lentivirus (Relik)caps		1e-48
4dgd_A	165	Trimcyp Cyclophilin Domain From Macaca Mulatta: H70		1e-48
2alf_A	164	Crystal Structure Of Human Cypa Mutant K131a Length		1e-48
3bt8_A	172	Crystal Structure Of Mutant Cyclophilin (R147a) Fro		1e-48
3k0r_A	165	Cryogenic Structure Of Cypa Mutant Arg55lys Length		2e-48
3k0o_A	165	Room Temperature Structure Of Cypa Mutant Ser99thr		2e-48
1ist_A	162	Crystal Structure Of Yeast Cyclophilin A, Cpr1 Leng		2e-48
2x2c_K	165	Acetyl-Cypa:cyclosporine Complex Length = 165		2e-48
2x2a_A	165	Free Acetyl-Cypa Trigonal Form Length = 165		2e-48
2x25_B	169	Free Acetyl-Cypa Orthorhombic Form Length = 169		3e-48
2x83_B	163	Evolutionary Basis Of Hiv Restriction By The Antire		3e-48
2r99_A	173	Crystal Structure Of Cyclophilin Abh-Like Domain Of		4e-48
2hqj_A	183	Cyclophilin From Leishmania Major Length = 183		7e-48
1zmf_A	165	C Domain Of Human Cyclophilin-33(Hcyp33) Length = 1		2e-47
2cfe_A	162	The 1.5 A Crystal Structure Of The Malassezia Sympo		3e-47
1aws_A	164	Secypa Complexed With Hagpia (Pseudo-Symmetric Mono		4e-46
3uch_A	174	Crystal Structure Of A Hypotherical Peptidyl-Prolyl		1e-45
1qoi_A	177	U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length =		4e-45
2gw2_A	198	Crystal Structure Of The Peptidyl-Prolyl Isomerase		8e-44
2wfj_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		1e-43
2plu_A	186	Crystal Structure Of Cryptosporidium Parvum Cycloph		1e-43
3pmp_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		3e-43
3o7t_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		4e-43
1qng_A	170	Plasmodium Falciparum Cyclophilin Complexed With Cy		5e-43
2wfi_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		2e-42
1qnh_A	170	Plasmodium Falciparum Cyclophilin (Double Mutant) C		9e-42
4i9y_A	167	Structure Of The C-terminal Domain Of Nup358 Length		2e-41
1c5f_A	177	Crystal Structure Of The Cyclophilin-Like Domain Fr		4e-41
3k2c_A	193	Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isom		2e-39
1z81_A	229	Crystal Structure Of Cyclophilin From Plasmodium Yo		6e-38
2he9_A	192	Structure Of The Peptidylprolyl Isomerase Domain Of		3e-37
2c3b_A	172	The Crystal Structure Of Aspergillus Fumigatus Cycl		1e-35
2a2n_A	176	Crystal Structure Of The Peptidylprolyl Isomerase D		3e-28
2x7k_A	166	The Crystal Structure Of Ppil1 In Complex With Cycl		8e-28
1xwn_A	174	Solution Structure Of Cyclophilin Like 1(Ppil1) And		8e-28
2k7n_A	203	Solution Structure Of The Ppil1 Bound To A Fragment		9e-28
2fu0_A	160	Plasmodium Falciparum Cyclophilin Pfe0505w Putative		2e-25
1xyh_A	161	Crystal Structure Of Recombinant Human Cyclophilin		3e-25
2oju_A	167	X-Ray Structure Of Complex Of Human Cyclophilin J W		4e-25
1zkc_A	197	Crystal Structure Of The Cyclophiln_ring Domain Of		8e-24
1w74_A	191	X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomer		2e-21
2b71_A	196	Plasmodium Yoelii Cyclophilin-Like Protein Length =		3e-21
2poe_A	185	Crystal Structure Of Cryptosporidium Parvum Cycloph		4e-17
3bo7_A	201	Crystal Structure Of Toxoplasma Gondii Peptidyl-Pro		1e-15
2hq6_A	185	Structure Of The Cyclophilin_cecyp16-like Domain Of		5e-13
3t1u_A	163	Crystal Structure Of The Complex Of Cyclophilin-a E		6e-09
2nul_A	164	Peptidylprolyl Isomerase From E. Coli Length = 164		8e-09
1lop_A	164	Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P		4e-08
3bkp_A	232	Crystal Structure Of The Toxoplasma Gondii Cyclophi		2e-06
1clh_A	166	Three-Dimensional Solution Structure Of Escherichia		1e-05
1j2a_A	166	Structure Of E. Coli Cyclophilin B K163t Mutant Len		1e-05
3s6m_A	167	The Structure Of A Peptidyl-Prolyl Cis-Trans Isomer		2e-05
2ose_A	234	Crystal Structure Of The Mimivirus Cyclophilin Leng		1e-04

>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine Length = 166

Iteration: 1
 Score =  208 bits (530), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 98/139 (70%), Positives = 110/139 (79%)
Query: 74  VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXX 133
           V+ DVD  GKP GR+V+ L  DVVPKTAENFRALCTGEKG+GYKG +FHR+I  FM Q  
Sbjct: 7   VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAG 66
Query: 134 XXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNR 193
                      SIYGS F DE+F LKHVGPGVLSMANAGPNTNGSQFFICT+KT WLD +
Sbjct: 67  DFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGK 126
Query: 194 HVVFGHVIDGMDVVRKLES 212
           HVVFGHVI+GMDVV+K+ES
Sbjct: 127 HVVFGHVIEGMDVVKKIES 145

>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A Resolution Length = 165

Iteration: 1
 Score =  208 bits (529), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 98/139 (70%), Positives = 110/139 (79%)
Query: 74  VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXX 133
           V+ DVD  GKP GR+V+ L  DVVPKTAENFRALCTGEKG+GYKG +FHR+I  FM Q  
Sbjct: 6   VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAG 65
Query: 134 XXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNR 193
                      SIYGS F DE+F LKHVGPGVLSMANAGPNTNGSQFFICT+KT WLD +
Sbjct: 66  DFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGK 125
Query: 194 HVVFGHVIDGMDVVRKLES 212
           HVVFGHVI+GMDVV+K+ES
Sbjct: 126 HVVFGHVIEGMDVVKKIES 144

>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With Cyclosporin A Length = 165

Iteration: 1
 Score =  208 bits (529), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 98/139 (70%), Positives = 110/139 (79%)
Query: 74  VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXX 133
           V+ DVD  GKP GR+V+ L  DVVPKTAENFRALCTGEKG+GYKG +FHR+I  FM Q  
Sbjct: 6   VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAG 65
Query: 134 XXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNR 193
                      SIYGS F DE+F LKHVGPGVLSMANAGPNTNGSQFFICT+KT WLD +
Sbjct: 66  DFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGK 125
Query: 194 HVVFGHVIDGMDVVRKLES 212
           HVVFGHVI+GMDVV+K+ES
Sbjct: 126 HVVFGHVIEGMDVVKKIES 144

>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A Resolution At Room Temperature Length = 164

Iteration: 1
 Score =  207 bits (528), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 98/139 (70%), Positives = 110/139 (79%)
Query: 74  VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXX 133
           V+ DVD  GKP GR+V+ L  DVVPKTAENFRALCTGEKG+GYKG +FHR+I  FM Q  
Sbjct: 5   VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAG 64
Query: 134 XXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNR 193
                      SIYGS F DE+F LKHVGPGVLSMANAGPNTNGSQFFICT+KT WLD +
Sbjct: 65  DFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGK 124
Query: 194 HVVFGHVIDGMDVVRKLES 212
           HVVFGHVI+GMDVV+K+ES
Sbjct: 125 HVVFGHVIEGMDVVKKIES 143

>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A Length = 190

Iteration: 1
 Score =  205 bits (521), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 103/166 (62%), Positives = 115/166 (69%)
Query: 70  VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
           VT KVFFDV IG K  GRIV+GLFG VVPKT ENF AL TGEKGYGYKG  FHR+IKDFM
Sbjct: 14  VTAKVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFM 73
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
           IQ            +SIYG +F DE+F LKH G G +SMANAGP+TNGSQFFI   K  W
Sbjct: 74  IQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTW 133
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPL 235
           LD +HVVFG VIDGM VV  +E   T   D P   C IINSG++ +
Sbjct: 134 LDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKIDV 179

>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With Immunosuppressive Drug Cyclosporin A Length = 182

Iteration: 1
 Score =  201 bits (512), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 101/166 (60%), Positives = 116/166 (69%)
Query: 70  VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
           VT KVFFDV IG K  GRIV+GLFG+VVPKT ENF AL TGEKGYGYKG  FHR+IKDFM
Sbjct: 6   VTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFM 65
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
           IQ            +SIYG +F DE+F LKH G G +SMANAGP+TNGSQFFI   K  W
Sbjct: 66  IQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTW 125
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPL 235
           LD +HVVFG V+DGM VV  +E   T   D P   C I+NSG++ +
Sbjct: 126 LDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKIDV 171

>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans Length = 182

Iteration: 1
 Score =  198 bits (503), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 99/168 (58%), Positives = 113/168 (67%)
Query: 69  KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDF 128
           KVT +V+FD++IGGKP GRIV+GLFG  VPKTA NF  L    KG GY G  FHR+I DF
Sbjct: 4   KVTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADF 63
Query: 129 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 188
           MIQ             SIYG  F DE+F LKH G G LSMANAG +TNGSQFFI TVKTP
Sbjct: 64  MIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTP 123
Query: 189 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 236
           WLD RHVVFG +++GMDVVRK+E  E    D PK    I  SG + +D
Sbjct: 124 WLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIAVD 171

>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent Loop Cyclophilin From Caenorhabditis Elegans Length = 173

Iteration: 1
 Score =  196 bits (499), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 100/169 (59%), Positives = 118/169 (69%), Gaps = 8/169 (4%)
Query: 72  TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRI 124
           +KVFFD+ IGGK +GRIVM L+ DVVPKTA NFRALCTGE G G       +KG  FHRI
Sbjct: 4   SKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRI 63
Query: 125 IKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICT 184
           I +FMIQ             SIYG  F DE+F  KH GPGVLSMANAGPNTNGSQFF+CT
Sbjct: 64  IPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCT 123
Query: 185 VKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           VKT WLD +HVVFG V++G+DVV+ +ES   S++  P   C I + G+L
Sbjct: 124 VKTEWLDGKHVVFGRVVEGLDVVKAVES-NGSQSGKPVKDCMIADCGQL 171

>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes Hyperelastosis Cutis In The American Quarter Horse Length = 185

Iteration: 1
 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 95/168 (56%), Positives = 118/168 (70%)
Query: 69  KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDF 128
           KVT KV+FD+ IG +  GR+V+GLFG  VPKT +NF AL TGEKG+GYK   FHR+IKDF
Sbjct: 10  KVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDF 69
Query: 129 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 188
           MIQ             SIYG  F DE+F LKH GPG +SMANAG +TNGSQFFI TVKT 
Sbjct: 70  MIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTA 129
Query: 189 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 236
           WLD +HVVFG V++GM+VVRK+E+ +T   D P     I + G++ ++
Sbjct: 130 WLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKIEVE 177

>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B Length = 185

Iteration: 1
 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 95/168 (56%), Positives = 118/168 (70%)
Query: 69  KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDF 128
           KVT KV+FD+ IG +  GR+V+GLFG  VPKT +NF AL TGEKG+GYK   FHR+IKDF
Sbjct: 10  KVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDF 69
Query: 129 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 188
           MIQ             SIYG  F DE+F LKH GPG +SMANAG +TNGSQFFI TVKT 
Sbjct: 70  MIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTA 129
Query: 189 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 236
           WLD +HVVFG V++GM+VVRK+E+ +T   D P     I + G++ ++
Sbjct: 130 WLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKIEVE 177

>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution Length = 188

Iteration: 1
 Score =  195 bits (496), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 95/168 (56%), Positives = 117/168 (69%)
Query: 69  KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDF 128
           KVT KV+FD+ IG +  GR++ GLFG  VPKT +NF AL TGEKG+GYK   FHR+IKDF
Sbjct: 13  KVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDF 72
Query: 129 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 188
           MIQ             SIYG  F DE+F LKH GPG +SMANAG +TNGSQFFI TVKT 
Sbjct: 73  MIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTA 132
Query: 189 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 236
           WLD +HVVFG V++GM+VVRK+ES +T   D P     I + G++ ++
Sbjct: 133 WLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVE 180

>pdb|1CYN|A Chain A, Cyclophilin B Complexed With [d-(Cholinylester)ser8]-Cyclosporin Length = 178

Iteration: 1
 Score =  195 bits (496), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 95/168 (56%), Positives = 117/168 (69%)
Query: 69  KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDF 128
           KVT KV+FD+ IG +  GR++ GLFG  VPKT +NF AL TGEKG+GYK   FHR+IKDF
Sbjct: 3   KVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDF 62
Query: 129 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 188
           MIQ             SIYG  F DE+F LKH GPG +SMANAG +TNGSQFFI TVKT 
Sbjct: 63  MIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTA 122
Query: 189 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 236
           WLD +HVVFG V++GM+VVRK+ES +T   D P     I + G++ ++
Sbjct: 123 WLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVE 170

>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor Length = 184

Iteration: 1
 Score =  193 bits (490), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 96/175 (54%), Positives = 114/175 (65%), Gaps = 1/175 (0%)
Query: 59  SMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKG 118
           S  +++  Q  V   VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG
Sbjct: 10  SGRENLYFQGMVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKG 69
Query: 119 CSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGS 178
             FHRII  FM Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGS
Sbjct: 70  SCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGS 129
Query: 179 QFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           QFFICT KT WLD +HVVFG V +GM++V  +E    SR         I + G+L
Sbjct: 130 QFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 183

>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni Length = 172

Iteration: 1
 Score =  192 bits (487), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 96/167 (57%), Positives = 115/167 (68%), Gaps = 1/167 (0%)
Query: 67  QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIK 126
           Q +   +VFFD+ IG   AGRIVM L  D+VP+TAENFRALCTGE+G+GY  C FHR+I 
Sbjct: 6   QKRNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIP 65
Query: 127 DFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVK 186
            FM Q             SIYG  F+DE+F L+H G GVLSMAN+GPNTNGSQFFICT K
Sbjct: 66  QFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTK 125
Query: 187 TPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
             WLD +HVVFG V+DG +VV+K+ESV  S++   K P  I   GEL
Sbjct: 126 CDWLDGKHVVFGRVVDGQNVVKKMESV-GSKSGKVKEPVIISRCGEL 171

>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania Donovani Length = 172

Iteration: 1
 Score =  192 bits (487), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 95/167 (56%), Positives = 113/167 (67%), Gaps = 1/167 (0%)
Query: 67  QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIK 126
           + +VT KV+FDV I  +P GRI +GLFG   P T ENFR LCTGE G+GYK   FHR+I+
Sbjct: 7   EPEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQ 66
Query: 127 DFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVK 186
           +FMIQ             SIYG  F DE+  +KH   G LSMANAGPNTNGSQFFI T  
Sbjct: 67  NFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAP 125
Query: 187 TPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           TPWLD RHVVFG V+DGMDVV ++E  +T+  D P  P +I+ SGEL
Sbjct: 126 TPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score =  191 bits (485), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 101/169 (59%), Positives = 113/169 (66%), Gaps = 9/169 (5%)
Query: 73  KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG--------YKGCSFHRI 124
           +VFFDVDIGG+  GRIV+ LF D+VPKTAENFRALCTGEKG G        +KGC FHRI
Sbjct: 17  RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRI 76
Query: 125 IKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICT 184
           IK FMIQ             SIYG  FEDE+F  KH   G+LSMANAG NTNGSQFFI T
Sbjct: 77  IKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITT 136
Query: 185 VKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           V TP LD +HVVFG VI GM V + LE+VE  + + P   C I   GEL
Sbjct: 137 VPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECGEL 184

>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2 Length = 165

Iteration: 1
 Score =  190 bits (482), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 94/164 (57%), Positives = 109/164 (66%), Gaps = 1/164 (0%)
Query: 70  VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
           V   VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG  FHRII  FM
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
            Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT W
Sbjct: 62  CQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           LD +HVVFG V +GM++V  +E    SR         I + G+L
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164

>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With Cyclosporin A And N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine Cyclosporin A Length = 165

Iteration: 1
 Score =  189 bits (481), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 94/164 (57%), Positives = 109/164 (66%), Gaps = 1/164 (0%)
Query: 70  VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
           V   VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG  FHRII  FM
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
            Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT W
Sbjct: 62  CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           LD +HVVFG V +GM++V  +E    SR         I + G+L
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164

>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin Length = 165

Iteration: 1
 Score =  189 bits (481), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 94/164 (57%), Positives = 109/164 (66%), Gaps = 1/164 (0%)
Query: 70  VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
           V   VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG  FHRII  FM
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
            Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT W
Sbjct: 62  CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           LD +HVVFG V +GM++V  +E    SR         I + G+L
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164

>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro Length = 164

Iteration: 1
 Score =  189 bits (481), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 94/164 (57%), Positives = 109/164 (66%), Gaps = 1/164 (0%)
Query: 70  VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
           V   VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG  FHRII  FM
Sbjct: 1   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 60
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
            Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT W
Sbjct: 61  CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 120
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           LD +HVVFG V +GM++V  +E    SR         I + G+L
Sbjct: 121 LDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 163

>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi Length = 166

Iteration: 1
 Score =  189 bits (481), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 90/164 (54%), Positives = 117/164 (71%), Gaps = 1/164 (0%)
Query: 70  VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
           VT KV+FD+ IG +P GR+V+GLFG+ VPKT ENF+ L +GE G+GYKG  FHR+I++FM
Sbjct: 4   VTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFM 63
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
           IQ             SIYG+ F+DE+  +KH   G +SMANAGPN+NGSQFF+ T  TPW
Sbjct: 64  IQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFVTTAPTPW 122
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           LD RHVVFG V++GMDVV+K+E+ +T   D PK   +I + G L
Sbjct: 123 LDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166

>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N- Terminal Domain (1-146) M-Type H87a Complex. Length = 164

Iteration: 1
 Score =  189 bits (481), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 94/164 (57%), Positives = 109/164 (66%), Gaps = 1/164 (0%)
Query: 70  VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
           V   VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG  FHRII  FM
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
            Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT W
Sbjct: 62  CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           LD +HVVFG V +GM++V  +E    SR         I + G+L
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164

>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With Cyclophilin A Length = 173

Iteration: 1
 Score =  189 bits (481), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 94/164 (57%), Positives = 109/164 (66%), Gaps = 1/164 (0%)
Query: 70  VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
           V   VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG  FHRII  FM
Sbjct: 10  VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 69
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
            Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT W
Sbjct: 70  CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 129
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           LD +HVVFG V +GM++V  +E    SR         I + G+L
Sbjct: 130 LDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 172

>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c Mutant Length = 165

Iteration: 1
 Score =  189 bits (480), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 94/164 (57%), Positives = 109/164 (66%), Gaps = 1/164 (0%)
Query: 70  VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
           V   VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG  FHRII  FM
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
            Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT W
Sbjct: 62  CQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           LD +HVVFG V +GM++V  +E    SR         I + G+L
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164

>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a Length = 164

Iteration: 1
 Score =  189 bits (480), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 94/164 (57%), Positives = 109/164 (66%), Gaps = 1/164 (0%)
Query: 70  VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
           V   VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG  FHRII  FM
Sbjct: 1   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 60
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
            Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT W
Sbjct: 61  CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKW 120
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           LD +HVVFG V +GM++V  +E    SR         I + G+L
Sbjct: 121 LDGKHVVFGAVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 163

>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From Leishmania Donovani Length = 172

Iteration: 1
 Score =  189 bits (480), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 94/167 (56%), Positives = 112/167 (67%), Gaps = 1/167 (0%)
Query: 67  QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIK 126
           + +VT KV+FDV I  +P GRI +GLFG   P T ENFR LCTGE G+GYK   FHR+I+
Sbjct: 7   EPEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQ 66
Query: 127 DFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVK 186
           +FMIQ             SIYG  F DE+  +KH   G LSMANAGPNTNGSQFFI T  
Sbjct: 67  NFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAP 125
Query: 187 TPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           TPWLD  HVVFG V+DGMDVV ++E  +T+  D P  P +I+ SGEL
Sbjct: 126 TPWLDGAHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys Length = 165

Iteration: 1
 Score =  189 bits (479), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 93/164 (56%), Positives = 109/164 (66%), Gaps = 1/164 (0%)
Query: 70  VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
           V   VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG  FH+II  FM
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHKIIPGFM 61
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
            Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT W
Sbjct: 62  CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           LD +HVVFG V +GM++V  +E    SR         I + G+L
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164

>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr Length = 165

Iteration: 1
 Score =  188 bits (478), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 93/164 (56%), Positives = 109/164 (66%), Gaps = 1/164 (0%)
Query: 70  VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
           V   VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG  FHRII  FM
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
            Q             SIYG  FEDE+F+LKH GPG+L+MANAGPNTNGSQFFICT KT W
Sbjct: 62  CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQFFICTAKTEW 121
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           LD +HVVFG V +GM++V  +E    SR         I + G+L
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164

>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1 Length = 162

Iteration: 1
 Score =  188 bits (478), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 92/162 (56%), Positives = 113/162 (69%), Gaps = 1/162 (0%)
Query: 72  TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQ 131
           ++V+FDV+  G+P GR+V  L+ D+VPKTAENFRALCTGEKG+GY G  FHR+I DFM+Q
Sbjct: 2   SQVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFMLQ 61
Query: 132 XXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLD 191
                        SIYG  F DE+F   H  PG+LSMANAGPNTNGSQFFI TV  PWLD
Sbjct: 62  GGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLD 121
Query: 192 NRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
            +HVVFG V+DG D+V+K+ES+  S +   K    +  SGEL
Sbjct: 122 GKHVVFGEVVDGYDIVKKVESL-GSPSGATKARIVVAKSGEL 162

>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex Length = 165

Iteration: 1
 Score =  188 bits (477), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 94/164 (57%), Positives = 108/164 (65%), Gaps = 1/164 (0%)
Query: 70  VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
           V   VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG  FHRII  FM
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
            Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT W
Sbjct: 62  CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           LD  HVVFG V +GM++V  +E    SR         I + G+L
Sbjct: 122 LDGXHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164

>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form Length = 165

Iteration: 1
 Score =  188 bits (477), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 94/164 (57%), Positives = 108/164 (65%), Gaps = 1/164 (0%)
Query: 70  VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
           V   VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG  FHRII  FM
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
            Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT W
Sbjct: 62  CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKW 121
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           LD  HVVFG V +GM++V  +E    SR         I + G+L
Sbjct: 122 LDGXHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164

>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form Length = 169

Iteration: 1
 Score =  188 bits (477), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 94/164 (57%), Positives = 108/164 (65%), Gaps = 1/164 (0%)
Query: 70  VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
           V   VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG  FHRII  FM
Sbjct: 6   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 65
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
            Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT W
Sbjct: 66  CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKW 125
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           LD  HVVFG V +GM++V  +E    SR         I + G+L
Sbjct: 126 LDGXHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 168

>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The Antiretroviral Trimcyp Length = 163

Iteration: 1
 Score =  187 bits (476), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 93/164 (56%), Positives = 109/164 (66%), Gaps = 1/164 (0%)
Query: 70  VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
           V   VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG  FHRII  FM
Sbjct: 1   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 60
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
            Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT W
Sbjct: 61  CQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 120
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           LD +HVVFG V +GM++V  ++    SR         I + G+L
Sbjct: 121 LDGKHVVFGKVKEGMNIVEAMKRF-GSRNGKTSKKITIADCGQL 163

>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human Peptidylprolyl Isomerase E Isoform 1 Length = 173

Iteration: 1
 Score =  187 bits (475), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 92/169 (54%), Positives = 116/169 (68%), Gaps = 1/169 (0%)
Query: 64  VELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHR 123
           +  +A+   +V+ D+ IG KPAGRI M L  DVVP TAENFR LCT EKG+G+KG SFHR
Sbjct: 4   IAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHR 63
Query: 124 IIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFIC 183
           II  FM Q             SIYG  F+DE+F+LKH GPG+LSMAN+GPNTNGSQFF+ 
Sbjct: 64  IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 123
Query: 184 TVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGE 232
             KT WLD +HVVFG V +G+DV+R++E+ + S+   PK    I + GE
Sbjct: 124 CDKTDWLDGKHVVFGEVTEGLDVLRQIEA-QGSKDGKPKQKVIIADCGE 171

>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major Length = 183

Iteration: 1
 Score =  186 bits (473), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 102/176 (57%), Positives = 116/176 (65%), Gaps = 15/176 (8%)
Query: 73  KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRII 125
           KVFFD+ I  K AGRIVM L+ D VPKTAENFRALCTGEKG G       YK   FHR+I
Sbjct: 9   KVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRVI 68
Query: 126 KDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLK---HVGPGVLSMANAGPNTNGSQFFI 182
            +FMIQ             SIYG++F DESF  K   H G G LSMANAGPNTNGSQFFI
Sbjct: 69  PNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFFI 128
Query: 183 CTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINS--GELPLD 236
           CT  TPWLD +HVVFG VIDG+DVV+K+E + +S     K   RI+ S  GE+  D
Sbjct: 129 CTAATPWLDGKHVVFGRVIDGLDVVKKVERLGSSSG---KTRSRIVVSDCGEVAAD 181

>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33) Length = 165

Iteration: 1
 Score =  185 bits (469), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 91/160 (56%), Positives = 112/160 (70%), Gaps = 1/160 (0%)
Query: 73  KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQX 132
           +V+ D+ IG KPAGRI M L  DVVP TAENFR LCT EKG+G+KG SFHRII  FM Q 
Sbjct: 5   QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQG 64
Query: 133 XXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDN 192
                       SIYG  F+DE+F+LKH GPG+LSMAN+GPNTNGSQFF+   KT WLD 
Sbjct: 65  GDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDG 124
Query: 193 RHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGE 232
           +HVVFG V +G+DV+R++E+ + S+   PK    I + GE
Sbjct: 125 KHVVFGEVTEGLDVLRQIEA-QGSKDGKPKQKVIIADCGE 163

>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis Mala S 6 Allergen, A Member Of The Cyclophilin Pan- Allergen Family Length = 162

Iteration: 1
 Score =  184 bits (468), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 93/160 (58%), Positives = 108/160 (67%), Gaps = 1/160 (0%)
Query: 72  TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQ 131
           + VFFD+   G P G I   LF DVVPKTA NFRALCTGEKG+GY G  FHR+I DFM+Q
Sbjct: 2   SNVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQ 61
Query: 132 XXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLD 191
                        SIYG+ F DE+F LKH  PG+LSMANAGPNTNGSQFFI TV T WLD
Sbjct: 62  GGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLD 121
Query: 192 NRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSG 231
            +HVVFG VIDGM+VV+ +E+ E S +  P+    I   G
Sbjct: 122 GKHVVFGEVIDGMNVVKAIEA-EGSGSGKPRSRIEIAKCG 160

>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer) Length = 164

Iteration: 1
 Score =  181 bits (458), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 91/164 (55%), Positives = 105/164 (64%), Gaps = 1/164 (0%)
Query: 70  VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
           V   VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG  FHRII  F 
Sbjct: 1   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFX 60
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
            Q             SIYG  FEDE+F+LKH GPG+LS ANAGPNTNGSQFFICT KT W
Sbjct: 61  CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFICTAKTEW 120
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           LD +HVVFG V +G ++V   E    SR         I + G+L
Sbjct: 121 LDGKHVVFGKVKEGXNIVEAXERF-GSRNGKTSKKITIADCGQL 163

>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A Resolution Length = 174

Iteration: 1
 Score =  179 bits (454), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 89/169 (52%), Positives = 113/169 (66%), Gaps = 1/169 (0%)
Query: 64  VELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHR 123
           +  +A+   +V+ D+ IG KPAGRI   L  DVVP TAENFR LCT EKG+G+KG SFHR
Sbjct: 5   IAKKARSNPQVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFGFKGSSFHR 64
Query: 124 IIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFIC 183
           II  F  Q             SIYG  F+DE+F+LKH GPG+LS AN+GPNTNGSQFF+ 
Sbjct: 65  IIPQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFFLT 124
Query: 184 TVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGE 232
             KT WLD +HVVFG V +G+DV+R++E+ + S+   PK    I + GE
Sbjct: 125 CDKTDWLDGKHVVFGEVTEGLDVLRQIEA-QGSKDGKPKQKVIIADCGE 172

>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length = 177

Iteration: 1
 Score =  177 bits (449), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 91/169 (53%), Positives = 110/169 (65%), Gaps = 5/169 (2%)
Query: 70  VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGE-----KGYGYKGCSFHRI 124
           V   VFFDV IGG+  GR+ + LF DVVPKTAENFR  CTGE        GYKG +FHR+
Sbjct: 9   VNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRV 68
Query: 125 IKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICT 184
           IKDFMIQ             SIY   F DE+F L+H  PG+LSMAN+GP+TNG QFFI  
Sbjct: 69  IKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITC 128
Query: 185 VKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
            K  WLD +HVVFG +IDG+ V+RK+E+V T   + PK+P  I   GE+
Sbjct: 129 SKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177

>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain Of Human Cyclophilin G Length = 198

Iteration: 1
 Score =  173 bits (438), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 89/169 (52%), Positives = 106/169 (62%), Gaps = 8/169 (4%)
Query: 73  KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG--------YKGCSFHRI 124
           + FFD+ I  +PAGR+V  LF DV PKT ENFR LCTGEKG G        YK C FHR+
Sbjct: 28  RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRV 87
Query: 125 IKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICT 184
           +KDFM+Q             SIYG  FEDESF +KH    +LSMAN G +TNGSQFFI T
Sbjct: 88  VKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQFFITT 147
Query: 185 VKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
             TP LD  HVVFG VI G +VVR++E+ +T     P    RI++ GEL
Sbjct: 148 KPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 196

>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G In Complex With Cyclosporin A Length = 179

Iteration: 1
 Score =  173 bits (438), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 89/169 (52%), Positives = 106/169 (62%), Gaps = 8/169 (4%)
Query: 73  KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG--------YKGCSFHRI 124
           + FFD+ I  +PAGR+V  LF DV PKT ENFR LCTGEKG G        YK C FHR+
Sbjct: 11  RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRV 70
Query: 125 IKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICT 184
           +KDFM+Q             SIYG  FEDESF +KH    +LSMAN G +TNGSQFFI T
Sbjct: 71  VKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITT 130
Query: 185 VKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
             TP LD  HVVFG VI G +VVR++E+ +T     P    RI++ GEL
Sbjct: 131 KPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179

>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120 Length = 186

Iteration: 1
 Score =  172 bits (437), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 90/159 (56%), Positives = 101/159 (63%), Gaps = 7/159 (4%)
Query: 74  VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRIIK 126
           V+FD+ IG  PAGRI M LF D VP TAENFRALCTGEKG G       Y G  FHRII 
Sbjct: 22  VYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIP 81
Query: 127 DFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVK 186
            FMIQ             SIYGS F DE+FV  H  P +LSMANAGPNTNGSQFFI TV 
Sbjct: 82  QFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVP 141
Query: 187 TPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPC 225
            PWLD +HVVFG V++GM+VV+ +E   +      K  C
Sbjct: 142 CPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNGKPTKSVC 180

>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa In Complex With Cyclosporin A Length = 164

Iteration: 1
 Score =  171 bits (433), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 80/138 (57%), Positives = 97/138 (70%)
Query: 74  VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXX 133
           VFF++ I  KP GRIV  L+ + VPKTA+NFR L TG+ G+GYK   FHR+I  FM+Q  
Sbjct: 5   VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGG 64
Query: 134 XXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNR 193
                      SIYG  F DE+F +KH  PG+LSMANAG NTNGSQFFI TV T WLD +
Sbjct: 65  DFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGK 124
Query: 194 HVVFGHVIDGMDVVRKLE 211
           HVVFG VI+G+D+VRK+E
Sbjct: 125 HVVFGEVIEGLDIVRKVE 142

>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa Length = 164

Iteration: 1
 Score =  171 bits (432), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 80/138 (57%), Positives = 97/138 (70%)
Query: 74  VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXX 133
           VFF++ I  KP GRIV  L+ + VPKTA+NFR L TG+ G+GYK   FHR+I  FM+Q  
Sbjct: 6   VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGG 65
Query: 134 XXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNR 193
                      SIYG  F DE+F +KH  PG+LSMANAG NTNGSQFFI TV T WLD +
Sbjct: 66  DFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGK 125
Query: 194 HVVFGHVIDGMDVVRKLE 211
           HVVFG VI+G+D+VRK+E
Sbjct: 126 HVVFGEVIEGLDIVRKVE 143

>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  170 bits (431), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 90/168 (53%), Positives = 107/168 (63%), Gaps = 7/168 (4%)
Query: 72  TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEK------GYGYKGCSFHRII 125
           +KVFFD+ I    AGRI+  LF D+ P+T ENFRALCTGEK         YK   FHRII
Sbjct: 4   SKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRII 63
Query: 126 KDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTV 185
             FM Q             SIYG SF DE+F +KH  PG+LSMANAGPNTN SQFFI  V
Sbjct: 64  PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLV 123
Query: 186 KTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
             PWLD +HVVFG VI+GM+VVR++E  E +++ Y K    I + GEL
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEK-EGAKSGYVKRSVVITDCGEL 170

>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G Length = 179

Iteration: 1
 Score =  169 bits (427), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 105/169 (62%), Gaps = 8/169 (4%)
Query: 73  KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG--------YKGCSFHRI 124
           + FFD+ I  +PAGR+V  LF DV PKT ENFR LCTGEKG G        YK   FHR+
Sbjct: 11  RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRV 70
Query: 125 IKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICT 184
           +KDFM+Q             SIYG  FEDESF +KH    +LSMAN G +TNGSQFFI T
Sbjct: 71  VKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITT 130
Query: 185 VKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
             TP LD  HVVFG VI G +VVR++E+ +T     P    RI++ GEL
Sbjct: 131 KPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179

>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant) Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  166 bits (421), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 88/168 (52%), Positives = 105/168 (62%), Gaps = 7/168 (4%)
Query: 72  TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEK------GYGYKGCSFHRII 125
           +KVFFD+ I    AGRI+  LF D+ P+T ENFRALCTGEK         YK   FHRII
Sbjct: 4   SKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRII 63
Query: 126 KDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTV 185
             FM Q             SIYG SF DE+F +KH  PG+LSMANAGPNTN SQF I  V
Sbjct: 64  PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLITLV 123
Query: 186 KTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
             PWLD +HVVFG VI+GM+VVR++E  E +++ Y K    I + GE 
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEK-EGAKSGYVKRSVVITDCGEW 170

>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358 Length = 167

Iteration: 1
 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 82/139 (58%), Positives = 96/139 (69%)
Query: 74  VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXX 133
           VFFDV   G+P GRI M LF ++VP+TAENFRALCTGEKG+G+K   FHR+I DF+ Q  
Sbjct: 9   VFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFVCQGG 68
Query: 134 XXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNR 193
                      SIYG  FEDE+F +KH GPG+LSMAN G NTN SQF I   K   LD +
Sbjct: 69  DITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFK 128
Query: 194 HVVFGHVIDGMDVVRKLES 212
           HVVFG V DGMD V+K+ES
Sbjct: 129 HVVFGFVKDGMDTVKKIES 147

>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From Brugia Malayi Complexed With Cyclosporin A Length = 177

Iteration: 1
 Score =  164 bits (415), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 87/176 (49%), Positives = 107/176 (60%), Gaps = 8/176 (4%)
Query: 66  LQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG--------YK 117
           +  K   +VF DV I G  AGRIVM L+ D+ P+T  NF  LCTG  G G        YK
Sbjct: 1   MSKKDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYK 60
Query: 118 GCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNG 177
           G +FHR+IK+FMIQ             SIYG  F+DE FV+KH  P V+SMAN GPNTNG
Sbjct: 61  GSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNG 120
Query: 178 SQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           SQFFI T   P L+N HVVFG V+ G +VV K+E ++T+  + P     I+N GEL
Sbjct: 121 SQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176

>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Encephalitozoon Cuniculi At 1.9 A Resolution Length = 193

Iteration: 1
 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 82/152 (53%), Positives = 97/152 (63%), Gaps = 6/152 (3%)
Query: 59  SMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKG 118
           SMAK+       +  V+FDV    +  GRIVM L  D+VPKTA+NFR LC   KG GYKG
Sbjct: 21  SMAKEA------SGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKG 74
Query: 119 CSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGS 178
            +FHRII  FM+Q             SIYG  F DE+F LKH   G+LSMAN G +TNGS
Sbjct: 75  STFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGS 134
Query: 179 QFFICTVKTPWLDNRHVVFGHVIDGMDVVRKL 210
           QFFI   KT WLD +HVVFG V++GMDVV K+
Sbjct: 135 QFFITLGKTQWLDEKHVVFGEVVEGMDVVHKI 166

>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii Length = 229

Iteration: 1
 Score =  154 bits (388), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 78/168 (46%), Positives = 106/168 (63%), Gaps = 8/168 (4%)
Query: 74  VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGY-----GYKGCSFHRIIKDF 128
           VF D+++G    G+    LF ++VPKT+ENFR  CTGE        GYK   FHR+IK+F
Sbjct: 62  VFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEF 121
Query: 129 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 188
           MIQ            +SIYG  F+DE+F +KH   G+LSMAN+GPNTNG QFFI T K  
Sbjct: 122 MIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCE 181
Query: 189 WLDNRHVVFGHVIDG--MDVVRKLESVETSRTDY-PKVPCRIINSGEL 233
           WLD ++VVFG +ID   + +++K+E+V  +   Y PK+P  ++  GEL
Sbjct: 182 WLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229

>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The Human Nk-Tumour Recognition Protein Length = 192

Iteration: 1
 Score =  151 bits (382), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 78/166 (46%), Positives = 103/166 (62%), Gaps = 8/166 (4%)
Query: 76  FDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG--------YKGCSFHRIIKD 127
           FD++I  +P GRI+  LF D+ PKT +NF  LC+GEKG G        YKG +FHR++K+
Sbjct: 24  FDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKN 83
Query: 128 FMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKT 187
           FMIQ             SIYG  F+DE+F+LKH    +LSMAN G +TNGSQFFI T   
Sbjct: 84  FMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPA 143
Query: 188 PWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           P LD  HVVFG VI G +V+ ++E+++T     P    R+I+ G L
Sbjct: 144 PHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVL 189

>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin Reveals 3d Domain Swapping Of A Central Element Length = 172

Iteration: 1
 Score =  146 bits (368), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 82/170 (48%), Positives = 101/170 (59%), Gaps = 8/170 (4%)
Query: 72  TKVFFDVD-----IGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIK 126
           ++VFFDV+           GRIV  LF   VPKTA+NFR LC    G GY+  +FHRII 
Sbjct: 3   SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIP 62
Query: 127 DFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVK 186
           +FMIQ             SIYG  F DE+F  KH   G+LSMANAGPNTNGSQFFI T  
Sbjct: 63  NFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAV 122
Query: 187 TPWLDNRHVVFGHVID--GMDVVRKLESV-ETSRTDYPKVPCRIINSGEL 233
           T WLD +HVVFG V D     VV+++E++  +S +       +I+N GEL
Sbjct: 123 TSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172

>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain Of Human Ppwd1 Length = 176

Iteration: 1
 Score =  121 bits (304), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/146 (49%), Positives = 85/146 (58%), Gaps = 6/146 (4%)
Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 145
           G I   LF    PKT ENF   C   +   Y G +FHRIIK FMIQ             S
Sbjct: 31  GDIHTKLFPVECPKTVENF---CVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGE-S 86
Query: 146 IYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 204
           I+G  FEDE    L+H  P  LSMANAG NTNGSQFFI  V TPWLDN+H VFG V  GM
Sbjct: 87  IWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGM 146
Query: 205 DVVRKLESVETS-RTDYPKVPCRIIN 229
           +VV+++ +V+ + +TD P     IIN
Sbjct: 147 EVVQRISNVKVNPKTDKPYEDVSIIN 172

>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With Cyclosporine A Suggests A Binding Mode For Skip Length = 166

Iteration: 1
 Score =  120 bits (300), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 68/146 (46%), Positives = 85/146 (58%), Gaps = 5/146 (3%)
Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 145
           G IV+ L+    PKT +NF  L    +GY Y G  FHRIIKDFMIQ             S
Sbjct: 21  GIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTGTGRGGA-S 76
Query: 146 IYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 204
           IYG  FEDE    LK  G G+L+MANAGP+TNGSQFF+    T WLD +H +FG V  G+
Sbjct: 77  IYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGI 136
Query: 205 DVVRKLESVETSRTDYPKVPCRIINS 230
            +V ++  VET+  D P    +II +
Sbjct: 137 GMVNRVGMVETNSQDRPVDDVKIIKA 162

>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And Insights Into Its Interaction With Skip Length = 174

Iteration: 1
 Score =  120 bits (300), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 68/146 (46%), Positives = 85/146 (58%), Gaps = 5/146 (3%)
Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 145
           G IV+ L+    PKT +NF  L    +GY Y G  FHRIIKDFMIQ             S
Sbjct: 21  GIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTGTGRGGA-S 76
Query: 146 IYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 204
           IYG  FEDE    LK  G G+L+MANAGP+TNGSQFF+    T WLD +H +FG V  G+
Sbjct: 77  IYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGI 136
Query: 205 DVVRKLESVETSRTDYPKVPCRIINS 230
            +V ++  VET+  D P    +II +
Sbjct: 137 GMVNRVGMVETNSQDRPVDDVKIIKA 162

>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of Skip Length = 203

Iteration: 1
 Score =  120 bits (300), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 68/146 (46%), Positives = 85/146 (58%), Gaps = 5/146 (3%)
Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 145
           G IV+ L+    PKT +NF  L    +GY Y G  FHRIIKDFMIQ             S
Sbjct: 21  GIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTGTGRGGA-S 76
Query: 146 IYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 204
           IYG  FEDE    LK  G G+L+MANAGP+TNGSQFF+    T WLD +H +FG V  G+
Sbjct: 77  IYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGI 136
Query: 205 DVVRKLESVETSRTDYPKVPCRIINS 230
            +V ++  VET+  D P    +II +
Sbjct: 137 GMVNRVGMVETNSQDRPVDDVKIIKA 162

>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative Cyclosporin- Binding Domain Length = 160

Iteration: 1
 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/145 (45%), Positives = 80/145 (55%), Gaps = 5/145 (3%)
Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 145
           G I + LF     KT +NF        GY Y  C FHR+IK FM+Q             S
Sbjct: 15  GDIHISLFYKECKKTVQNFSVHSIN--GY-YNNCIFHRVIKHFMVQTGDPSGDGTGGE-S 70
Query: 146 IYGSSFEDESF-VLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 204
           I+G+ FEDE F  L H  P ++SMAN GPNTNGSQFFI TV  PWLD +H VFG V  G 
Sbjct: 71  IWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGS 130
Query: 205 DVVRKLESVETSRTDYPKVPCRIIN 229
            +V  +E V T + D P    +I+N
Sbjct: 131 KIVLDIEKVRTDKRDKPLEDIKILN 155

>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J Length = 161

Iteration: 1
 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/137 (47%), Positives = 79/137 (57%), Gaps = 5/137 (3%)
Query: 85  AGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 144
            G I + +F +  PKT ENF ALC       Y GC FHR IK FM+Q             
Sbjct: 9   VGDIKIEVFCERTPKTCENFLALCASNY---YNGCIFHRNIKGFMVQTGDPTGTGRGGN- 64
Query: 145 SIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDG 203
           SI+G  FEDE S  LKH   GV+SMAN GPNTNGSQFFI   K P LD ++ VFG VIDG
Sbjct: 65  SIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDG 124
Query: 204 MDVVRKLESVETSRTDY 220
           ++ + +LE +  +   Y
Sbjct: 125 LETLDELEKLPVNEKTY 141

>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With Cyclosporin A Length = 167

Iteration: 1
 Score =  111 bits (277), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/136 (47%), Positives = 79/136 (58%), Gaps = 5/136 (3%)
Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 145
           G I + +F +  PKT ENF ALC       Y GC FHR IK FM+Q             S
Sbjct: 16  GDIKIEVFCERTPKTCENFLALCASNY---YNGCIFHRNIKGFMVQTGDPTGTGRGGN-S 71
Query: 146 IYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 204
           I+G  FEDE S  LKH   GV+SMAN GPNTNGSQFFI   K P LD ++ VFG VIDG+
Sbjct: 72  IWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGL 131
Query: 205 DVVRKLESVETSRTDY 220
           + + +LE +  +   Y
Sbjct: 132 ETLDELEKLPVNEKTY 147

>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B Length = 197

Iteration: 1
 Score =  107 bits (266), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 62/144 (43%), Positives = 83/144 (57%), Gaps = 6/144 (4%)
Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 145
           G + + L  D+ PKT ENF  LC   K + Y G  FHR I++F+IQ             S
Sbjct: 29  GDLNLELHCDLTPKTCENFIRLC---KKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGE-S 84
Query: 146 IYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 204
            +G  F+DE    L H G G+LSMAN+GPN+N SQFFI      +LD +H +FG V+ G 
Sbjct: 85  YWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGF 144
Query: 205 DVVRKLESVETS-RTDYPKVPCRI 227
           DV+  +E+VE+  +TD PK   RI
Sbjct: 145 DVLTAMENVESDPKTDRPKEEIRI 168

>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A, Ppia, Rv0009, From Mycobacterium Tuberculosis. Length = 191

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/156 (39%), Positives = 72/156 (46%), Gaps = 17/156 (10%)
Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYG------------YKGCSFHRIIKDFMIQXX 133
           G I + LFG+  PKT  NF  L  G K Y             Y G  FHR+I+ FMIQ  
Sbjct: 33  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92
Query: 134 XXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNR 193
                        +   F  E   L+   P +L+MANAGP TNGSQFFI   KTP L+ R
Sbjct: 93  DPTGTGRGGPGYKFADEFHPE---LQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRR 149
Query: 194 HVVFGHVIDG--MDVVRKLESVETSRTDYPKVPCRI 227
           H +FG VID     VV  +    T   D P  P  I
Sbjct: 150 HTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 185

>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein Length = 196

Iteration: 1
 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/144 (40%), Positives = 77/144 (53%), Gaps = 5/144 (3%)
Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 145
           G   + L+    PKT  NF  LC  E G+ Y    FHR+I +F+IQ             S
Sbjct: 48  GDFEVELYWYHSPKTCLNFYTLC--EMGF-YDNTIFHRVIPNFVIQGGDPTGTGKGGK-S 103
Query: 146 IYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 204
           IYG  FEDE +  LKH G G+LSM+N GPNTN SQFFI     P LD +H +F  V   M
Sbjct: 104 IYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNM 163
Query: 205 DVVRKLESVETSRTDYPKVPCRII 228
             +  + SV+T+ T+ P    +I+
Sbjct: 164 TCIENIASVQTTATNKPIFDLKIL 187

>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660 Length = 185

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 75/141 (53%), Gaps = 9/141 (6%)
Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 145
           G +   LF    PK  +NF AL     GY YK   FH+ IK F+IQ             S
Sbjct: 26  GDLKFELFCSQCPKACKNFLALSA--SGY-YKNTIFHKNIKGFIIQGGDPTGTGKGGE-S 81
Query: 146 IYGSSFEDESF-VLKHVGPGVLSMANAG----PNTNGSQFFICTVKTPWLDNRHVVFGHV 200
           IYG  F+DE +  LK+   G+LSMA+ G    PNTNGSQFFI     P L+  +V+FG +
Sbjct: 82  IYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKL 141
Query: 201 IDGMDVVRKLESVETSRTDYP 221
           IDG + +  LE+  + ++  P
Sbjct: 142 IDGFETLNTLENCPSDKSHKP 162

>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl Cis-Trans Isomerase, 541.M00136 Length = 201

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 15/142 (10%)
Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 145
           G + + L  D+ P+  ++F  LC  +    +    FHR I++FMIQ              
Sbjct: 16  GSLNIELHADMAPRACDSFLRLCAVKY---FDDTIFHRCIRNFMIQGGRAELRQPSKKKE 72
Query: 146 IY-----------GSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNR 193
           +            G+ FEDE    L H G GVLSMAN G ++N S+FFI       L+N+
Sbjct: 73  VQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNK 132
Query: 194 HVVFGHVIDGMDVVRKLESVET 215
           H +FG V+ G+DV+R+ E +ET
Sbjct: 133 HTIFGRVVGGLDVLRQWEKLET 154

>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The Serologically Defined Colon Cancer Antigen 10 From Homo Sapiens Length = 185

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 73/145 (50%), Gaps = 6/145 (4%)
Query: 85  AGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 144
           AG I + L+    PK   NF  LC   + Y Y    FHR++  F++Q             
Sbjct: 33  AGDIDIELWSKEAPKACRNFIQLCL--EAY-YDNTIFHRVVPGFIVQGGDPTGTGSGGE- 88
Query: 145 SIYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVI-D 202
           SIYG+ F+DE    L+    G+++MANAG + NGSQFF    +   L+N+H +FG V  D
Sbjct: 89  SIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVTGD 148
Query: 203 GMDVVRKLESVETSRTDYPKVPCRI 227
            +  + +L  V+    + P  P +I
Sbjct: 149 TVYNMLRLSEVDIDDDERPHNPHKI 173

>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme From Azotobacter Vinelandii With Sucafpfpna Peptide Length = 163

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 71/174 (40%), Gaps = 46/174 (26%)
Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 145
           G I + LF D  P+TA NF       K   Y G  FHR+I  FMIQ              
Sbjct: 9   GTITLKLFADKAPETAANFEQYV---KDGHYDGTIFHRVIDGFMIQ-------------- 51
Query: 146 IYGSSFEDESFVLKHVGPGVLSMANAG---------------PNTNGSQFFICTVKTPWL 190
             G  FE      K     + + AN G               P++  +QFFI      +L
Sbjct: 52  --GGGFE-PGMKQKSTRAPIKNEANNGLSNKKYTIAMARTPDPHSASAQFFINVKDNAFL 108
Query: 191 DNR--------HVVFGHVIDGMDVVRKLESVET-SRTDYPKVPCR--IINSGEL 233
           D+         + VFG V++G DVV +++SV T SR  +  VP    II   E+
Sbjct: 109 DHTAPTAHGWGYAVFGEVVEGTDVVDRIKSVATGSRAGHGDVPVDDVIIEKAEI 162

>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli Length = 164

Iteration: 1
 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 68/150 (45%), Gaps = 19/150 (12%)
Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 145
           G IV+  F D  P+T +NF   C   +G+ Y    FHR+I  FMIQ              
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGFEPGMKQKATK 65
Query: 146 IYGSSFEDESFVLKHVGPGVLSMANA-GPNTNGSQFFICTVKTPWLDNR--------HVV 196
                 ++E+        G L+MA    P++  +QFFI  V   +L+          + V
Sbjct: 66  ---EPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCV 122
Query: 197 FGHVIDGMDVVRKLESVETSRT----DYPK 222
           F  V+DGMDVV K++ V T R+    D PK
Sbjct: 123 FAEVVDGMDVVDKIKGVATGRSGMHQDVPK 152

>pdb|1LOP|A Chain A, Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P-Nitroanilide Length = 164

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 67/150 (44%), Gaps = 19/150 (12%)
Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 145
           G IV+  F D  P+T +NF   C   +G+ Y    FHR+I  FMIQ              
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGFEPGMKQKATK 65
Query: 146 IYGSSFEDESFVLKHVGPGVLSMANA-GPNTNGSQFFICTVKTPWLDNR--------HVV 196
                 ++E+        G L+MA    P++  +QFFI  V   +L+          + V
Sbjct: 66  ---EPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCV 122
Query: 197 FGHVIDGMDVVRKLESVETSRT----DYPK 222
           F  V+DGMD V K++ V T R+    D PK
Sbjct: 123 FAEVVDGMDEVDKIKGVATGRSGMHQDVPK 152

>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin, 49.m03261 Length = 232

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 68/156 (43%), Gaps = 20/156 (12%)
Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 145
           G + + L+    P    NF  LC   +GY Y    FHR++KDF++Q             +
Sbjct: 31  GDLDVELWARECPLACRNFVQLCL--EGY-YVNTIFHRVVKDFIVQGGDPTGTGRGGADT 87
Query: 146 IY-GSSFEDESF-VLKHVGPGVLSMANAGPN--------------TNGSQFFICTVKTPW 189
            + G  F+ E+   LK    G++ +AN G +              TNG+QFFI   +   
Sbjct: 88  TFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADV 147
Query: 190 LDNRHVVFGHVI-DGMDVVRKLESVETSRTDYPKVP 224
           L+N + +FG V    +  + K   +E  + D P  P
Sbjct: 148 LNNAYTLFGKVTGHTLYNLMKFNDLEVGKEDRPMTP 183

>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli Periplasmic Cyclophilin Length = 166

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 68/174 (39%), Gaps = 44/174 (25%)
Query: 85  AGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 144
           AG I + L     P + +NF        G+ Y   +FHR+I  FMIQ             
Sbjct: 13  AGNIELELDKQKAPVSVQNFVDYVN--SGF-YNNTTFHRVIPGFMIQ------------- 56
Query: 145 SIYGSSFEDESFVLKHVGPGVLSMANAG-PNTNG--------------SQFFICTVKTPW 189
              G  F  E    K   P + + A+ G  NT G              SQFFI      +
Sbjct: 57  ---GGGFT-EQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAF 112
Query: 190 LDNR-----HVVFGHVIDGMDVVRKLESVETSRT----DYPKVPCRIINSGELP 234
           LD+      + VFG V+ GMDV  K+  V T       + P  P  I+++  LP
Sbjct: 113 LDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP 166

>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Length = 166

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 68/174 (39%), Gaps = 44/174 (25%)
Query: 85  AGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 144
           AG I + L     P + +NF        G+ Y   +FHR+I  FMIQ             
Sbjct: 13  AGNIELELDKQKAPVSVQNFVDYVN--SGF-YNNTTFHRVIPGFMIQ------------- 56
Query: 145 SIYGSSFEDESFVLKHVGPGVLSMANAG-PNTNG--------------SQFFICTVKTPW 189
              G  F  E    K   P + + A+ G  NT G              SQFFI      +
Sbjct: 57  ---GGGFT-EQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAF 112
Query: 190 LDNR-----HVVFGHVIDGMDVVRKLESVETSRT----DYPKVPCRIINSGELP 234
           LD+      + VFG V+ GMDV  K+  V T       + P  P  I+++  LP
Sbjct: 113 LDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVLP 166

>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 167

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 43/141 (30%)
Query: 98  PKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFV 157
           PKT ENF  L   +KG+ Y G  FHR+I  FMIQ                G  FE     
Sbjct: 25  PKTVENF--LNYVKKGH-YDGTIFHRVINGFMIQ----------------GGGFE-PGLK 64
Query: 158 LKHVGPGVLSMANAG---------------PNTNGSQFFICTVKTPWLDNR--------H 194
            K     + + AN G               P++  +QFFI      +L++         +
Sbjct: 65  QKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGY 124
Query: 195 VVFGHVIDGMDVVRKLESVET 215
            VFG V++G D+V K+++V+T
Sbjct: 125 AVFGKVVEGQDIVDKIKAVKT 145

>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin Length = 234

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 40/176 (22%)
Query: 73  KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGE------KGYG----------- 115
           +V+ D+ +  +  GR+ + LF D  P   ENF  L  G+       G G           
Sbjct: 16  RVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRT 75
Query: 116 YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSS-----FEDESFVLKHVGPGVLSMAN 170
           Y+GC FH ++ +  I              ++Y        F D  +   H   G+LS+  
Sbjct: 76  YEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGD--YFYPHESKGLLSLV- 132
Query: 171 AGPNTN--GSQFFICTVKTPW-----------LDNRHVVFGHVIDGMDVVRKLESV 213
             P T+  G++++  T                LD   VV G V  G+DV+ K+ S+
Sbjct: 133 --PYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSM 186

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	237
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	1e-125
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	1e-125
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	1e-124
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	1e-123
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	1e-122
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	1e-122
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	1e-121
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	1e-121
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	1e-120
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	1e-120
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	1e-118
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-118
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	1e-118
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-118
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	1e-117
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-117
1z81_A	229	Cyclophilin; structural genomics, structural genom	1e-117
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	1e-114
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	1e-111
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	4e-84
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	8e-84
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	2e-83
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	4e-83
2b71_A	196	Cyclophilin-like protein; structural genomics, str	3e-80
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	1e-75
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	8e-75
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	4e-73
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	2e-71
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	7e-71
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	4e-65
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	4e-64
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	6e-47
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	9e-47
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	8e-45
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	5e-39

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Length = 192

 Score =  351 bits (903), Expect = e-125
 Identities = 88/179 (49%), Positives = 118/179 (65%), Gaps = 8/179 (4%)

Query: 65  ELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG--------Y 116
            L  + + +  FD++I  +P GRI+  LF D+ PKT +NF  LC+GEKG G        Y
Sbjct: 13  GLVPRGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCY 72

Query: 117 KGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTN 176
           KG +FHR++K+FMIQGGDF+EG+G GG SIYG  F+DE+F+LKH    +LSMAN G +TN
Sbjct: 73  KGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTN 132

Query: 177 GSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPL 235
           GSQFFI T   P LD  HVVFG VI G +V+ ++E+++T     P    R+I+ G L  
Sbjct: 133 GSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLAT 191

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Length = 188

 Score =  351 bits (902), Expect = e-125
 Identities = 106/176 (60%), Positives = 131/176 (74%)

Query: 61  AKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCS 120
           + + +   KVT KV+FD+ IG +  GR++ GLFG  VPKT +NF AL TGEKG+GYK   
Sbjct: 5   SDEKKKGPKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSK 64

Query: 121 FHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQF 180
           FHR+IKDFMIQGGDFT GDGTGG SIYG  F DE+F LKH GPG +SMANAG +TNGSQF
Sbjct: 65  FHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQF 124

Query: 181 FICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 236
           FI TVKT WLD +HVVFG V++GM+VVRK+ES +T   D P     I + G++ ++
Sbjct: 125 FITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVE 180

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Length = 177

 Score =  348 bits (895), Expect = e-124
 Identities = 98/176 (55%), Positives = 119/176 (67%), Gaps = 8/176 (4%)

Query: 66  LQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG--------YK 117
           +  K   +VF DV I G  AGRIVM L+ D+ P+T  NF  LCTG  G G        YK
Sbjct: 1   MSKKDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYK 60

Query: 118 GCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNG 177
           G +FHR+IK+FMIQGGDFT+GDGTGG SIYG  F+DE FV+KH  P V+SMAN GPNTNG
Sbjct: 61  GSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNG 120

Query: 178 SQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           SQFFI T   P L+N HVVFG V+ G +VV K+E ++T+  + P     I+N GEL
Sbjct: 121 SQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Length = 177

 Score =  346 bits (889), Expect = e-123
 Identities = 101/175 (57%), Positives = 121/175 (69%), Gaps = 5/175 (2%)

Query: 64  VELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGE-----KGYGYKG 118
           V   + V   VFFDV IGG+  GR+ + LF DVVPKTAENFR  CTGE        GYKG
Sbjct: 3   VANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKG 62

Query: 119 CSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGS 178
            +FHR+IKDFMIQGGDF  GDGTG  SIY   F DE+F L+H  PG+LSMAN+GP+TNG 
Sbjct: 63  STFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGC 122

Query: 179 QFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           QFFI   K  WLD +HVVFG +IDG+ V+RK+E+V T   + PK+P  I   GE+
Sbjct: 123 QFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Length = 172

 Score =  343 bits (882), Expect = e-122
 Identities = 105/169 (62%), Positives = 123/169 (72%), Gaps = 1/169 (0%)

Query: 65  ELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRI 124
             + +VT KV+FDV I  +P GRI +GLFG   P T ENFR LCTGE G+GYK   FHR+
Sbjct: 5   HHEPEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRV 64

Query: 125 IKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICT 184
           I++FMIQGGDFT  DGTGG SIYG  F DE+  +KH   G LSMANAGPNTNGSQFFI T
Sbjct: 65  IQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKH-FVGALSMANAGPNTNGSQFFITT 123

Query: 185 VKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
             TPWLD RHVVFG V+DGMDVV ++E  +T+  D P  P +I+ SGEL
Sbjct: 124 APTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Length = 179

 Score =  342 bits (881), Expect = e-122
 Identities = 98/169 (57%), Positives = 117/169 (69%), Gaps = 8/169 (4%)

Query: 73  KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG--------YKGCSFHRI 124
           + FFD+ I  +PAGR+V  LF DV PKT ENFR LCTGEKG G        YK C FHR+
Sbjct: 11  RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRV 70

Query: 125 IKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICT 184
           +KDFM+QGGDF+EG+G GG SIYG  FEDESF +KH    +LSMAN G +TNGSQFFI T
Sbjct: 71  VKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITT 130

Query: 185 VKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
             TP LD  HVVFG VI G +VVR++E+ +T     P    RI++ GEL
Sbjct: 131 KPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Length = 172

 Score =  339 bits (873), Expect = e-121
 Identities = 106/169 (62%), Positives = 127/169 (75%), Gaps = 1/169 (0%)

Query: 65  ELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRI 124
           + Q +   +VFFD+ IG   AGRIVM L  D+VP+TAENFRALCTGE+G+GY  C FHR+
Sbjct: 4   KKQKRNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRV 63

Query: 125 IKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICT 184
           I  FM QGGDF +GDGTGG SIYG  F+DE+F L+H G GVLSMAN+GPNTNGSQFFICT
Sbjct: 64  IPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICT 123

Query: 185 VKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
            K  WLD +HVVFG V+DG +VV+K+ESV  S++   K P  I   GEL
Sbjct: 124 TKCDWLDGKHVVFGRVVDGQNVVKKMESVG-SKSGKVKEPVIISRCGEL 171

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Length = 193

 Score =  340 bits (875), Expect = e-121
 Identities = 90/173 (52%), Positives = 111/173 (64%), Gaps = 1/173 (0%)

Query: 65  ELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRI 124
            +  + +  V+FDV    +  GRIVM L  D+VPKTA+NFR LC   KG GYKG +FHRI
Sbjct: 21  SMAKEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRI 80

Query: 125 IKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICT 184
           I  FM+QGGD+T  +GTGG SIYG  F DE+F LKH   G+LSMAN G +TNGSQFFI  
Sbjct: 81  IPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITL 140

Query: 185 VKTPWLDNRHVVFGHVIDGMDVVRKLESVET-SRTDYPKVPCRIINSGELPLD 236
            KT WLD +HVVFG V++GMDVV K+    + S          I + G L  +
Sbjct: 141 GKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCGVLGSN 193

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Length = 184

 Score =  339 bits (873), Expect = e-120
 Identities = 105/175 (60%), Positives = 124/175 (70%), Gaps = 1/175 (0%)

Query: 59  SMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKG 118
           S  +++  Q  V   VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG
Sbjct: 10  SGRENLYFQGMVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKG 69

Query: 119 CSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGS 178
             FHRII  FM QGGDFT  +GTGG SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGS
Sbjct: 70  SCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGS 129

Query: 179 QFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           QFFICT KT WLD +HVVFG V +GM++V  +E    SR         I + G+L
Sbjct: 130 QFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 183

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Length = 173

 Score =  337 bits (867), Expect = e-120
 Identities = 101/173 (58%), Positives = 125/173 (72%), Gaps = 1/173 (0%)

Query: 61  AKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCS 120
              +  +A+   +V+ D+ IG KPAGRI M L  DVVP TAENFR LCT EKG+G+KG S
Sbjct: 1   GSPIAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSS 60

Query: 121 FHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQF 180
           FHRII  FM QGGDFT  +GTGG SIYG  F+DE+F+LKH GPG+LSMAN+GPNTNGSQF
Sbjct: 61  FHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQF 120

Query: 181 FICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           F+   KT WLD +HVVFG V +G+DV+R++E+   S+   PK    I + GE 
Sbjct: 121 FLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQG-SKDGKPKQKVIIADCGEY 172

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Length = 173

 Score =  334 bits (859), Expect = e-118
 Identities = 110/172 (63%), Positives = 129/172 (75%), Gaps = 8/172 (4%)

Query: 70  VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFH 122
             +KVFFD+ IGGK +GRIVM L+ DVVPKTA NFRALCTGE G G       +KG  FH
Sbjct: 2   SRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFH 61

Query: 123 RIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFI 182
           RII +FMIQGGDFT G+GTGG SIYG  F DE+F  KH GPGVLSMANAGPNTNGSQFF+
Sbjct: 62  RIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFL 121

Query: 183 CTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELP 234
           CTVKT WLD +HVVFG V++G+DVV+ +ES   S++  P   C I + G+L 
Sbjct: 122 CTVKTEWLDGKHVVFGRVVEGLDVVKAVESNG-SQSGKPVKDCMIADCGQLK 172

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Length = 170

 Score =  334 bits (859), Expect = e-118
 Identities = 97/168 (57%), Positives = 116/168 (69%), Gaps = 7/168 (4%)

Query: 72  TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEK------GYGYKGCSFHRII 125
           +KVFFD+ I    AGRI+  LF D+ P+T ENFRALCTGEK         YK   FHRII
Sbjct: 4   SKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRII 63

Query: 126 KDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTV 185
             FM QGGD T G+G+GG SIYG SF DE+F +KH  PG+LSMANAGPNTN SQFFI  V
Sbjct: 64  PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLV 123

Query: 186 KTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
             PWLD +HVVFG VI+GM+VVR++E    +++ Y K    I + GEL
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEKEG-AKSGYVKRSVVITDCGEL 170

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  340 bits (875), Expect = e-118
 Identities = 109/184 (59%), Positives = 125/184 (67%), Gaps = 9/184 (4%)

Query: 61  AKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG----- 115
           +   +       +VFFDVDIGG+  GRIV+ LF D+VPKTAENFRALCTGEKG G     
Sbjct: 5   SPQAKPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGK 64

Query: 116 ---YKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAG 172
              +KGC FHRIIK FMIQGGDF+  +GTGG SIYG  FEDE+F  KH   G+LSMANAG
Sbjct: 65  PLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAG 124

Query: 173 PNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGE 232
            NTNGSQFFI TV TP LD +HVVFG VI GM V + LE+VE  + + P   C I   GE
Sbjct: 125 SNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECGE 183

Query: 233 LPLD 236
           L   
Sbjct: 184 LKEG 187

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Length = 165

 Score =  331 bits (852), Expect = e-118
 Identities = 110/161 (68%), Positives = 127/161 (78%), Gaps = 1/161 (0%)

Query: 73  KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQG 132
            V+ DVD  GKP GR+V+ L  DVVPKTAENFRALCTGEKG+GYKG +FHR+I  FM Q 
Sbjct: 5   LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQA 64

Query: 133 GDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDN 192
           GDFT  +GTGG SIYGS F DE+F LKHVGPGVLSMANAGPNTNGSQFFICT+KT WLD 
Sbjct: 65  GDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 124

Query: 193 RHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           +HVVFGHVI+GMDVV+K+ES   S++        I + G+L
Sbjct: 125 KHVVFGHVIEGMDVVKKIESFG-SKSGRTSKKIVITDCGQL 164

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} PDB: 3o7t_A Length = 164

 Score =  331 bits (852), Expect = e-117
 Identities = 92/161 (57%), Positives = 114/161 (70%), Gaps = 1/161 (0%)

Query: 73  KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQG 132
            VFF++ I  KP GRIV  L+ + VPKTA+NFR L TG+ G+GYK   FHR+I  FM+QG
Sbjct: 4   NVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQG 63

Query: 133 GDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDN 192
           GDFT  +GTGG SIYG  F DE+F +KH  PG+LSMANAG NTNGSQFFI TV T WLD 
Sbjct: 64  GDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDG 123

Query: 193 RHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           +HVVFG VI+G+D+VRK+E    S +       +I + G +
Sbjct: 124 KHVVFGEVIEGLDIVRKVEGKG-SASGKTNATIKITDCGTV 163

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Length = 186

 Score =  332 bits (853), Expect = e-117
 Identities = 105/174 (60%), Positives = 117/174 (67%), Gaps = 8/174 (4%)

Query: 65  ELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YK 117
            L  +    V+FD+ IG  PAGRI M LF D VP TAENFRALCTGEKG G       Y 
Sbjct: 13  NLYFQGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYT 72

Query: 118 GCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNG 177
           G  FHRII  FMIQGGDFT GDGTGG SIYGS F DE+FV  H  P +LSMANAGPNTNG
Sbjct: 73  GSFFHRIIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNG 132

Query: 178 SQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSG 231
           SQFFI TV  PWLD +HVVFG V++GM+VV+ +E    S+   P     I  SG
Sbjct: 133 SQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCG-SQNGKPTKSVCITASG 185

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Length = 229

 Score =  333 bits (856), Expect = e-117
 Identities = 84/177 (47%), Positives = 113/177 (63%), Gaps = 8/177 (4%)

Query: 65  ELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGY-----GYKGC 119
            L       VF D+++G    G+    LF ++VPKT+ENFR  CTGE        GYK  
Sbjct: 53  LLTNPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNT 112

Query: 120 SFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQ 179
            FHR+IK+FMIQGGDF   +G+G +SIYG  F+DE+F +KH   G+LSMAN+GPNTNG Q
Sbjct: 113 IFHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQ 172

Query: 180 FFICTVKTPWLDNRHVVFGHVI--DGMDVVRKLESVET-SRTDYPKVPCRIINSGEL 233
           FFI T K  WLD ++VVFG +I  D + +++K+E+V        PK+P  ++  GEL
Sbjct: 173 FFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Length = 172

 Score =  322 bits (828), Expect = e-114
 Identities = 92/170 (54%), Positives = 111/170 (65%), Gaps = 8/170 (4%)

Query: 72  TKVFFDV-----DIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIK 126
           ++VFFDV            GRIV  LF   VPKTA+NFR LC    G GY+  +FHRII 
Sbjct: 3   SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIP 62

Query: 127 DFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVK 186
           +FMIQGGDFT G+GTGG SIYG  F DE+F  KH   G+LSMANAGPNTNGSQFFI T  
Sbjct: 63  NFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAV 122

Query: 187 TPWLDNRHVVFGHVID--GMDVVRKLESVET-SRTDYPKVPCRIINSGEL 233
           T WLD +HVVFG V D     VV+++E++ + S +       +I+N GEL
Sbjct: 123 TSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Length = 234

 Score =  318 bits (817), Expect = e-111
 Identities = 44/201 (21%), Positives = 71/201 (35%), Gaps = 30/201 (14%)

Query: 67  QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKG------------- 113
            +    +V+ D+ +  +  GR+ + LF D  P   ENF  L  G+               
Sbjct: 10  NSGKNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYN 69

Query: 114 ----YGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFED---ESFVLKHVGPGVL 166
                 Y+GC FH ++ +  I  GD    +G+   ++Y           +   H   G+L
Sbjct: 70  RHINRTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGLL 129

Query: 167 SMA----NAGPNTNGSQFFIC------TVKTPWLDNRHVVFGHVIDGMDVVRKLESVETS 216
           S+      +G     S F I       +     LD   VV G V  G+DV+ K+ S+   
Sbjct: 130 SLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKP 189

Query: 217 RTDYPKVPCRIINSGELPLDA 237
                     I   G     +
Sbjct: 190 YAGRKYPTFSIGKCGAYLDSS 210

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160

 Score =  246 bits (630), Expect = 4e-84
 Identities = 74/145 (51%), Positives = 89/145 (61%), Gaps = 5/145 (3%)

Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS 145
           G I + LF     KT +NF        GY Y  C FHR+IK FM+Q GD + GDGTGG S
Sbjct: 15  GDIHISLFYKECKKTVQNFSVHSI--NGY-YNNCIFHRVIKHFMVQTGDPS-GDGTGGES 70

Query: 146 IYGSSFEDESF-VLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 204
           I+G+ FEDE F  L H  P ++SMAN GPNTNGSQFFI TV  PWLD +H VFG V  G 
Sbjct: 71  IWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGS 130

Query: 205 DVVRKLESVETSRTDYPKVPCRIIN 229
            +V  +E V T + D P    +I+N
Sbjct: 131 KIVLDIEKVRTDKRDKPLEDIKILN 155

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203

 Score =  247 bits (632), Expect = 8e-84
 Identities = 76/149 (51%), Positives = 93/149 (62%), Gaps = 5/149 (3%)

Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS 145
           G IV+ L+    PKT +NF  L    +GY Y G  FHRIIKDFMIQGGD T G G GG S
Sbjct: 21  GIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPT-GTGRGGAS 76

Query: 146 IYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 204
           IYG  FEDE    LK  G G+L+MANAGP+TNGSQFF+    T WLD +H +FG V  G+
Sbjct: 77  IYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGI 136

Query: 205 DVVRKLESVETSRTDYPKVPCRIINSGEL 233
            +V ++  VET+  D P    +II +   
Sbjct: 137 GMVNRVGMVETNSQDRPVDDVKIIKAYPS 165

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176

 Score =  245 bits (627), Expect = 2e-83
 Identities = 83/161 (51%), Positives = 94/161 (58%), Gaps = 6/161 (3%)

Query: 71  TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMI 130
             K   D  I     G I   LF    PKT ENF        GY Y G +FHRIIK FMI
Sbjct: 16  GPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHS--RNGY-YNGHTFHRIIKGFMI 72

Query: 131 QGGDFTEGDGTGGISIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
           Q GD T G G GG SI+G  FEDE    L+H  P  LSMANAG NTNGSQFFI  V TPW
Sbjct: 73  QTGDPT-GTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPW 131

Query: 190 LDNRHVVFGHVIDGMDVVRKLESVET-SRTDYPKVPCRIIN 229
           LDN+H VFG V  GM+VV+++ +V+   +TD P     IIN
Sbjct: 132 LDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN 172

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166

 Score =  244 bits (624), Expect = 4e-83
 Identities = 76/146 (52%), Positives = 93/146 (63%), Gaps = 5/146 (3%)

Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS 145
           G IV+ L+    PKT +NF  L    +GY Y G  FHRIIKDFMIQGGD T G G GG S
Sbjct: 21  GIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPT-GTGRGGAS 76

Query: 146 IYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 204
           IYG  FEDE    LK  G G+L+MANAGP+TNGSQFF+    T WLD +H +FG V  G+
Sbjct: 77  IYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGI 136

Query: 205 DVVRKLESVETSRTDYPKVPCRIINS 230
            +V ++  VET+  D P    +II +
Sbjct: 137 GMVNRVGMVETNSQDRPVDDVKIIKA 162

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196

 Score =  237 bits (608), Expect = 3e-80
 Identities = 67/145 (46%), Positives = 85/145 (58%), Gaps = 5/145 (3%)

Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS 145
           G   + L+    PKT  NF  LC  E G+ Y    FHR+I +F+IQGGD T G G GG S
Sbjct: 48  GDFEVELYWYHSPKTCLNFYTLC--EMGF-YDNTIFHRVIPNFVIQGGDPT-GTGKGGKS 103

Query: 146 IYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 204
           IYG  FEDE +  LKH G G+LSM+N GPNTN SQFFI     P LD +H +F  V   M
Sbjct: 104 IYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNM 163

Query: 205 DVVRKLESVETSRTDYPKVPCRIIN 229
             +  + SV+T+ T+ P    +I+ 
Sbjct: 164 TCIENIASVQTTATNKPIFDLKILR 188

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201

 Score =  226 bits (578), Expect = 1e-75
 Identities = 56/156 (35%), Positives = 80/156 (51%), Gaps = 15/156 (9%)

Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGD----GT 141
           G + + L  D+ P+  ++F  LC     Y +    FHR I++FMIQGG            
Sbjct: 16  GSLNIELHADMAPRACDSFLRLC--AVKY-FDDTIFHRCIRNFMIQGGRAELRQPSKKKE 72

Query: 142 GGISIY-------GSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNR 193
              S         G+ FEDE    L H G GVLSMAN G ++N S+FFI       L+N+
Sbjct: 73  VQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNK 132

Query: 194 HVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN 229
           H +FG V+ G+DV+R+ E +ET + D P  P ++  
Sbjct: 133 HTIFGRVVGGLDVLRQWEKLETDKKDKPLKPPKVEE 168

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185

 Score =  223 bits (571), Expect = 8e-75
 Identities = 66/168 (39%), Positives = 88/168 (52%), Gaps = 9/168 (5%)

Query: 67  QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIK 126
            +     ++F         G +   LF    PK  +NF AL     GY YK   FH+ IK
Sbjct: 7   HSSGRENLYFQGVRIITNYGDLKFELFCSQCPKACKNFLALS--ASGY-YKNTIFHKNIK 63

Query: 127 DFMIQGGDFTEGDGTGGISIYGSSFEDE-SFVLKHVGPGVLSMANAG----PNTNGSQFF 181
            F+IQGGD T G G GG SIYG  F+DE    LK+   G+LSMA+ G    PNTNGSQFF
Sbjct: 64  GFIIQGGDPT-GTGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFF 122

Query: 182 ICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN 229
           I     P L+  +V+FG +IDG + +  LE+  + ++  P     I +
Sbjct: 123 ITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKD 170

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161

 Score =  218 bits (558), Expect = 4e-73
 Identities = 75/146 (51%), Positives = 90/146 (61%), Gaps = 6/146 (4%)

Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS 145
           G I + +F +  PKT ENF ALC     Y Y GC FHR IK FM+Q GD T G G GG S
Sbjct: 10  GDIKIEVFCERTPKTCENFLALC--ASNY-YNGCIFHRNIKGFMVQTGDPT-GTGRGGNS 65

Query: 146 IYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 204
           I+G  FEDE S  LKH   GV+SMAN GPNTNGSQFFI   K P LD ++ VFG VIDG+
Sbjct: 66  IWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGL 125

Query: 205 DVVRKLESVET-SRTDYPKVPCRIIN 229
           + + +LE +    +T  P     I +
Sbjct: 126 ETLDELEKLPVNEKTYRPLNDVHIKD 151

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197

 Score =  215 bits (550), Expect = 2e-71
 Identities = 72/146 (49%), Positives = 93/146 (63%), Gaps = 6/146 (4%)

Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS 145
           G + + L  D+ PKT ENF  LC  +K Y Y G  FHR I++F+IQGGD T G GTGG S
Sbjct: 29  GDLNLELHCDLTPKTCENFIRLC--KKHY-YDGTIFHRSIRNFVIQGGDPT-GTGTGGES 84

Query: 146 IYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 204
            +G  F+DE    L H G G+LSMAN+GPN+N SQFFI      +LD +H +FG V+ G 
Sbjct: 85  YWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGF 144

Query: 205 DVVRKLESVET-SRTDYPKVPCRIIN 229
           DV+  +E+VE+  +TD PK   RI  
Sbjct: 145 DVLTAMENVESDPKTDRPKEEIRIDA 170

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185

 Score =  213 bits (545), Expect = 7e-71
 Identities = 56/146 (38%), Positives = 82/146 (56%), Gaps = 6/146 (4%)

Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS 145
           G I + L+    PK   NF  LC   + Y Y    FHR++  F++QGGD T G G+GG S
Sbjct: 34  GDIDIELWSKEAPKACRNFIQLC--LEAY-YDNTIFHRVVPGFIVQGGDPT-GTGSGGES 89

Query: 146 IYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVI-DG 203
           IYG+ F+DE    L+    G+++MANAG + NGSQFF    +   L+N+H +FG V  D 
Sbjct: 90  IYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVTGDT 149

Query: 204 MDVVRKLESVETSRTDYPKVPCRIIN 229
           +  + +L  V+    + P  P +I +
Sbjct: 150 VYNMLRLSEVDIDDDERPHNPHKIKS 175

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191

 Score =  199 bits (508), Expect = 4e-65
 Identities = 71/159 (44%), Positives = 82/159 (51%), Gaps = 19/159 (11%)

Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYG------------YKGCSFHRIIKDFMIQGG 133
           G I + LFG+  PKT  NF  L  G K Y             Y G  FHR+I+ FMIQGG
Sbjct: 33  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92

Query: 134 DFTEGDGTGGISIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDN 192
           D T G G GG    G  F DE    L+   P +L+MANAGP TNGSQFFI   KTP L+ 
Sbjct: 93  DPT-GTGRGG---PGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNR 148

Query: 193 RHVVFGHVID--GMDVVRKLESVETSRTDYPKVPCRIIN 229
           RH +FG VID     VV  +    T   D P  P  I +
Sbjct: 149 RHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIES 187

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232

 Score =  198 bits (505), Expect = 4e-64
 Identities = 52/163 (31%), Positives = 76/163 (46%), Gaps = 24/163 (14%)

Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGG-- 143
           G + + L+    P    NF  LC   +GY Y    FHR++KDF++QGGD T G G GG  
Sbjct: 31  GDLDVELWARECPLACRNFVQLC--LEGY-YVNTIFHRVVKDFIVQGGDPT-GTGRGGAD 86

Query: 144 ISIYGSSFEDESFV--LKHVGPGVLSMANAGPN--------------TNGSQFFICTVKT 187
            +  G  F+ E     LK    G++ +AN G +              TNG+QFFI   + 
Sbjct: 87  TTFDGKPFDVE-THPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARA 145

Query: 188 PWLDNRHVVFGHVI-DGMDVVRKLESVETSRTDYPKVPCRIIN 229
             L+N + +FG V    +  + K   +E  + D P  P  I +
Sbjct: 146 DVLNNAYTLFGKVTGHTLYNLMKFNDLEVGKEDRPMTPPFIKS 188

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167

 Score =  152 bits (386), Expect = 6e-47
 Identities = 48/150 (32%), Positives = 75/150 (50%), Gaps = 18/150 (12%)

Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS 145
           G I + L     PKT ENF      +KG+ Y G  FHR+I  FMIQGG F         +
Sbjct: 13  GVIKLELDEAKAPKTVENFLNYV--KKGH-YDGTIFHRVINGFMIQGGGFE-PGLKQKPT 68

Query: 146 IYGSSFEDESFV-LKHVGPGVLSMA-NAGPNTNGSQFFICTVKTPWLDNR--------HV 195
              +   +E+   LK+     ++MA    P++  +QFFI      +L++         + 
Sbjct: 69  --DAPIANEANNGLKND-TYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYA 125

Query: 196 VFGHVIDGMDVVRKLESVET-SRTDYPKVP 224
           VFG V++G D+V K+++V+T S+  +  VP
Sbjct: 126 VFGKVVEGQDIVDKIKAVKTGSKGFHQDVP 155

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164

 Score =  151 bits (385), Expect = 9e-47
 Identities = 50/150 (33%), Positives = 72/150 (48%), Gaps = 18/150 (12%)

Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS 145
           G IV+  F D  P+T +NF   C   +G+ Y    FHR+I  FMIQGG F         +
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGFE-PGMKQKAT 64

Query: 146 IYGSSFEDESFV-LKHVGPGVLSMA-NAGPNTNGSQFFICTVKTPWLDNR--------HV 195
                 ++E+   LK+   G L+MA    P++  +QFFI  V   +L+          + 
Sbjct: 65  --KEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYC 121

Query: 196 VFGHVIDGMDVVRKLESVET-SRTDYPKVP 224
           VF  V+DGMD V K++ V T     +  VP
Sbjct: 122 VFAEVVDGMDEVDKIKGVATGRSGMHQDVP 151

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166

 Score =  146 bits (372), Expect = 8e-45
 Identities = 47/154 (30%), Positives = 69/154 (44%), Gaps = 18/154 (11%)

Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS 145
           G I + L     P + +NF        G+ Y   +FHR+I  FMIQGG FT         
Sbjct: 14  GNIELELDKQKAPVSVQNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFT-EQMQQKKP 69

Query: 146 IYGSSFEDESFV-LKHVGPGVLSMA-NAGPNTNGSQFFICTVKTPWLDNR-----HVVFG 198
                 ++E+   L++   G ++MA  A  ++  SQFFI      +LD+      + VFG
Sbjct: 70  --NPPIKNEADNGLRNT-RGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFG 126

Query: 199 HVIDGMDVVRKLESVETSRT----DYPKVPCRII 228
            V+ GMDV  K+  V T       + P  P  I+
Sbjct: 127 KVVKGMDVADKISQVPTHDVGPYQNVPSKPVVIL 160

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369

 Score =  137 bits (347), Expect = 5e-39
 Identities = 41/161 (25%), Positives = 59/161 (36%), Gaps = 40/161 (24%)

Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS 145
               + L G   P TA NF  L   E+ + Y G    R    F++Q GD  EG   G I 
Sbjct: 188 CVFRIVLDGYNAPVTAGNFVDLV--ERHF-YDGMEIQRSD-GFVVQTGD-PEGPAEGFID 242

Query: 146 ---------------------IYGSSFED-----ESFVLKHVGPGVLSMANAG--PNTNG 177
                                 YGS+ E+        V+     G ++MA      ++  
Sbjct: 243 PSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGS 302

Query: 178 SQFFICTVK-------TPWLDNRHVVFGHVIDGMDVVRKLE 211
           SQ F    +       +  LD R+ VFG+V D  D +  L+
Sbjct: 303 SQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLK 343

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	237
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	100.0
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	100.0
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	100.0
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	100.0
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	100.0
4fru_A	185	Cyclophilin B, peptidyl-prolyl CIS-trans isomerase	100.0
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	100.0
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	100.0
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	100.0
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	100.0
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	100.0
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	100.0
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	100.0
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	100.0
1z81_A	229	Cyclophilin; structural genomics, structural genom	100.0
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	100.0
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	100.0
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	100.0
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	100.0
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	100.0
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	100.0
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	100.0
2b71_A	196	Cyclophilin-like protein; structural genomics, str	100.0
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	100.0
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	100.0
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	100.0
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	100.0
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	100.0
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	100.0
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	100.0
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	100.0
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	100.0
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	100.0
3kop_A	188	Uncharacterized protein; protein with A cyclophili	95.42
2nnz_A	153	Hypothetical protein; beta-barrel, structural geno	91.42

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A

Probab=100.00  E-value=4.5e-56  Score=370.20  Aligned_cols=166  Identities=63%  Similarity=1.086  Sum_probs=160.7

Q ss_pred             cccccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccc
Q 026524           67 QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISI  146 (237)
Q Consensus        67 ~~~~~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~  146 (237)
                      .+.++++|||||++++++.|+|+||||++.||+||+||++||+|++|++|+|+.||||+|+|||||||+..++|.|+.++
T Consensus         7 ~~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si   86 (172)
T 2haq_A            7 EPEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKSI   86 (172)
T ss_dssp             CCCCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCCS
T ss_pred             CCCCCCeEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhccCCCcccCCCEEEEEECCCEEecCCccCCCCCCCccc
Confidence            46678999999999999999999999999999999999999999899999999999999999999999888899999999


Q ss_pred             cCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeE
Q 026524          147 YGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCR  226 (237)
Q Consensus       147 ~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~  226 (237)
                      ||..|++|++.++|. +|+|||||.+|++|+|||||++.++++||++|+|||+|++|||||++|++++++.+++|.++|+
T Consensus        87 ~g~~f~dE~~~l~h~-~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~  165 (172)
T 2haq_A           87 YGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVK  165 (172)
T ss_dssp             SSSCBCCCCCCSCCC-TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEE
T ss_pred             cCCcccCcCCCcccC-ceEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEeCCHHHHHHHHhCCcCCCCcCCCCeE
Confidence            999999999999998 9999999999999999999999999999999999999999999999999999998889999999


Q ss_pred             EEeeEEe
Q 026524          227 IINSGEL  233 (237)
Q Consensus       227 I~~cG~l  233 (237)
                      |.+||+|
T Consensus       166 I~~~g~l  172 (172)
T 2haq_A          166 IVASGEL  172 (172)
T ss_dssp             EEEEEEC
T ss_pred             EEEeEEC
Confidence            9999986

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*

Probab=100.00  E-value=2.1e-55  Score=367.86  Aligned_cols=164  Identities=59%  Similarity=0.980  Sum_probs=157.5

Q ss_pred             ccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCC---------cccCCCEEEEEEcCcEEEeCCCCCCCC
Q 026524           70 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKG---------YGYKGCSFHRIIKDFMIQGGDFTEGDG  140 (237)
Q Consensus        70 ~~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g---------~~Y~g~~f~Rii~~~~iqgGd~~~~~g  140 (237)
                      .+++|||||++++++.|+|+||||++.||+||+||++||+++++         + |+|+.||||+|+|||||||++.++|
T Consensus         5 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~-Y~g~~FhRvi~~f~iQgGd~~~~~g   83 (177)
T 1a58_A            5 DRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLH-YKGSTFHRVIKNFMIQGGDFTKGDG   83 (177)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCC-CTTCBEEEEETTTEEEECCCSSSSS
T ss_pred             CCcEEEEEEEECCEeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcce-eCCCEEEEEECCCEEEeCCccCCCC
Confidence            37899999999999999999999999999999999999987543         5 9999999999999999999988899


Q ss_pred             CCcccccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCC
Q 026524          141 TGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDY  220 (237)
Q Consensus       141 ~gg~s~~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~  220 (237)
                      +|++++||..|+||++.++|+++|+|||||.+|++|+|||||++.++||||++|+|||+|++|||||++|++++++.+++
T Consensus        84 ~gg~si~g~~f~dE~~~~~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~~~~~~  163 (177)
T 1a58_A           84 TGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNR  163 (177)
T ss_dssp             SCCCCTTSSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSC
T ss_pred             CCCCcccCCcccCcccCcccCCCeEEEEeeCCCCCceeEEEEECCCCCccCCCEEEEEEEEcCHHHHHHHHhCCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEeeEEee
Q 026524          221 PKVPCRIINSGELP  234 (237)
Q Consensus       221 P~~~v~I~~cG~l~  234 (237)
                      |.++|+|.+||+|.
T Consensus       164 P~~~v~I~~~G~l~  177 (177)
T 1a58_A          164 PLADVVILNCGELV  177 (177)
T ss_dssp             BSSCEEEEEEEEEC
T ss_pred             CCCCeEEEEeEEEC
Confidence            99999999999983

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A

Probab=100.00  E-value=1.8e-55  Score=366.62  Aligned_cols=166  Identities=63%  Similarity=1.096  Sum_probs=158.3

Q ss_pred             ccccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCccccc
Q 026524           68 AKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIY  147 (237)
Q Consensus        68 ~~~~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~  147 (237)
                      +..+++|||||++++|+.|+|+||||++.||+||+||++||++++|++|+|+.||||+|+|||||||+..++|+|+.++|
T Consensus         7 ~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~si~   86 (172)
T 2cmt_A            7 KRNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIY   86 (172)
T ss_dssp             --CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCCCBTT
T ss_pred             CCCCCEEEEEEEECCeecceEEEEEcCCCCCHHHHHHHHHhccCCCceECCCEEEEEECCCEEEcCCccCCCCCCCCccC
Confidence            44588999999999999999999999999999999999999987888899999999999999999999888999999999


Q ss_pred             CCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEE
Q 026524          148 GSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRI  227 (237)
Q Consensus       148 g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I  227 (237)
                      +..|+||++.++|.++|+|||||.+|++++|||||++.+++|||++|+|||+|++|||||++|++++++ +++|.++|+|
T Consensus        87 g~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~G~dvv~~I~~~~~~-~~~P~~~v~I  165 (172)
T 2cmt_A           87 GRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSK-SGKVKEPVII  165 (172)
T ss_dssp             BSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHGGGGCCT-TCCCSSCEEE
T ss_pred             CCcccccccCcccCCceEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCC-CCCCCCCEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999886 7899999999


Q ss_pred             EeeEEee
Q 026524          228 INSGELP  234 (237)
Q Consensus       228 ~~cG~l~  234 (237)
                      .+||+|.
T Consensus       166 ~~~g~l~  172 (172)
T 2cmt_A          166 SRCGELI  172 (172)
T ss_dssp             EEEEEEC
T ss_pred             EEeEeEC
Confidence            9999984

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A

Probab=100.00  E-value=2e-55  Score=368.62  Aligned_cols=162  Identities=60%  Similarity=1.023  Sum_probs=156.8

Q ss_pred             cceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCC---------cccCCCEEEEEEcCcEEEeCCCCCCCCC
Q 026524           71 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKG---------YGYKGCSFHRIIKDFMIQGGDFTEGDGT  141 (237)
Q Consensus        71 ~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g---------~~Y~g~~f~Rii~~~~iqgGd~~~~~g~  141 (237)
                      +++|||||++++++.|+|+||||++.||+||+||++||+|+++         + |+|+.||||+|+|||||||++.++++
T Consensus         9 ~~~vf~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~-Y~g~~FhRvi~~f~iQgGd~~~~~g~   87 (179)
T 2wfi_A            9 RPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLH-YKSCLFHRVVKDFMVQGGDFSEGNGR   87 (179)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSC-CTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCeEEEEEEECCccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCe-ECCCEEEEEECCCEEEcccccCCCCC
Confidence            7899999999999999999999999999999999999987643         5 99999999999999999999888999


Q ss_pred             CcccccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCC
Q 026524          142 GGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYP  221 (237)
Q Consensus       142 gg~s~~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P  221 (237)
                      +++++||..|+||++.++|+++|+|||||.+|++|+|||||++.++||||++|+|||+|++|||||++|++++++.+++|
T Consensus        88 gg~si~g~~f~dE~~~~~h~~~G~lsMAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~~~~P  167 (179)
T 2wfi_A           88 GGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKP  167 (179)
T ss_dssp             CCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTSCB
T ss_pred             CCCcccCCcccccccCcCcCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCeeEEEEEeCCHHHHHHHHcCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEeeEEe
Q 026524          222 KVPCRIINSGEL  233 (237)
Q Consensus       222 ~~~v~I~~cG~l  233 (237)
                      .++|+|.+||+|
T Consensus       168 ~~~v~I~~~G~l  179 (179)
T 2wfi_A          168 FAEVRILSCGEL  179 (179)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCeEEEeCeeC
Confidence            999999999986

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...

Probab=100.00  E-value=2.8e-55  Score=363.38  Aligned_cols=163  Identities=67%  Similarity=1.144  Sum_probs=157.5

Q ss_pred             cceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCC
Q 026524           71 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSS  150 (237)
Q Consensus        71 ~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~  150 (237)
                      +++|||||++++++.|+|+||||++.||+||+||++||+|+++++|+|+.||||+|+|||||||++.++|+|+.++|+..
T Consensus         3 ~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~   82 (165)
T 2z6w_A            3 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSR   82 (165)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSC
T ss_pred             CCEEEEEEEECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCCCccCcCCEEEEEECCCEEEeCCccCCCCCCCCcccCCc
Confidence            68999999999999999999999999999999999999988999999999999999999999999888999999999999


Q ss_pred             CCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEee
Q 026524          151 FEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINS  230 (237)
Q Consensus       151 ~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~c  230 (237)
                      |++|++.++|.++|+|||||.+|++++|||||++.+++|||++|+|||+|++|||||++|+++++ .+++|.++|+|.+|
T Consensus        83 f~dE~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~~-~~~~P~~~v~I~~~  161 (165)
T 2z6w_A           83 FPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGS-KSGRTSKKIVITDC  161 (165)
T ss_dssp             BCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC-TTSCCSSCEEEEEE
T ss_pred             ccCcccccccCCCCEEEEeeCCCCCcccEEEEEcCCCcccCCCeeEEEEEEcCHHHHHHHHhCCC-CCCCCCCcEEEEEe
Confidence            99999999999899999999999999999999999999999999999999999999999999986 58999999999999


Q ss_pred             EEee
Q 026524          231 GELP  234 (237)
Q Consensus       231 G~l~  234 (237)
                      |+|.
T Consensus       162 g~l~  165 (165)
T 2z6w_A          162 GQLS  165 (165)
T ss_dssp             EECC
T ss_pred             EEEC
Confidence            9984

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A

Probab=100.00  E-value=3e-55  Score=362.84  Aligned_cols=163  Identities=56%  Similarity=1.014  Sum_probs=157.9

Q ss_pred             cceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCC
Q 026524           71 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSS  150 (237)
Q Consensus        71 ~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~  150 (237)
                      +++|||||.+++|+.|+|+||||++.||+||+||++||+|++|++|+|+.|||++|+|||||||+..+++.|+.++|+..
T Consensus         2 ~p~vf~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~   81 (164)
T 3pmp_A            2 MANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEK   81 (164)
T ss_dssp             CCCEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSC
T ss_pred             CCEEEEEEEECCEEeeEEEEEEeCCCCcHHHHHHHHHhcccCCCcccCCEEEEEECCCeEEeCCCCCCCCCCCcccCCcc
Confidence            68999999999999999999999999999999999999988999999999999999999999998889999999999999


Q ss_pred             CCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEee
Q 026524          151 FEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINS  230 (237)
Q Consensus       151 ~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~c  230 (237)
                      |++|++.++|.++|+|||||.+|++++|||||++.++++||++|+|||+|++|||||++|++++++ +++|.++|+|.+|
T Consensus        82 ~~dE~~~l~h~~~G~lsma~~g~~t~~SQFfIt~~~~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~~-~~~P~~~v~I~~c  160 (164)
T 3pmp_A           82 FADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSA-SGKTNATIKITDC  160 (164)
T ss_dssp             BCCCCCCSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCSSCEEEEEE
T ss_pred             ccccccccCcCCCcEEEEeeCCCCCcccEEEEECCCChhhCCCccEEEEEeCCHHHHHHHHhCCCC-CCCcccCEEEEeC
Confidence            999999999999999999999999999999999999999999999999999999999999999987 7999999999999


Q ss_pred             EEee
Q 026524          231 GELP  234 (237)
Q Consensus       231 G~l~  234 (237)
                      |+|+
T Consensus       161 g~l~  164 (164)
T 3pmp_A          161 GTVA  164 (164)
T ss_dssp             EEC-
T ss_pred             eEEC
Confidence            9984

>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=2.3e-55  Score=369.95  Aligned_cols=170  Identities=62%  Similarity=1.076  Sum_probs=163.4

Q ss_pred             cccccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccc
Q 026524           67 QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISI  146 (237)
Q Consensus        67 ~~~~~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~  146 (237)
                      .+.++++|||||++++++.|+|+||||++.||+||+||++||++++|++|+|+.||||+|+|||||||++.+++.|+.++
T Consensus         8 ~p~~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si   87 (185)
T 4fru_A            8 GPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKSI   87 (185)
T ss_dssp             EEEEEEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCBT
T ss_pred             CCCcCcEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHHhcCCCCeEcCCEEEEeeCCCeEEECCCCCCCCCCCccc
Confidence            46789999999999999999999999999999999999999998778459999999999999999999998999999999


Q ss_pred             cCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeE
Q 026524          147 YGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCR  226 (237)
Q Consensus       147 ~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~  226 (237)
                      |+..|++|++.++|.++|+|||||.+|+++||||||++.+++|||++|+|||+|++|||||++|++++++.+++|.++|+
T Consensus        88 ~g~~f~de~~~~~h~~~G~lsma~~gp~t~~SQFfI~~~~~~~Ld~~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~  167 (185)
T 4fru_A           88 YGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVT  167 (185)
T ss_dssp             TBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEE
T ss_pred             cCCccCccccccCcCCCeEEEEeeCCCCCcceEEEEEeCCCcccCCCccEEEEEeCCHHHHHHHHhCCCCCCCcCCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeEEeeCC
Q 026524          227 IINSGELPLD  236 (237)
Q Consensus       227 I~~cG~l~~~  236 (237)
                      |.+||+|+++
T Consensus       168 I~~~g~l~~~  177 (185)
T 4fru_A          168 IADCGKIEVE  177 (185)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEceEEecC
Confidence            9999999753

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=2e-55  Score=371.03  Aligned_cols=170  Identities=62%  Similarity=1.065  Sum_probs=163.2

Q ss_pred             ccccccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCccc
Q 026524           66 LQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS  145 (237)
Q Consensus        66 ~~~~~~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s  145 (237)
                      ..+.++++|||||++++++.|+|+||||.+.||+||+||++||+|++|++|+|+.||||+|+|||||||+..++|+|+.+
T Consensus        10 ~~p~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~s   89 (188)
T 3ich_A           10 KGPKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKS   89 (188)
T ss_dssp             CSCEEEEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSSSCCCB
T ss_pred             CCCCcCCeEEEEEEECCEeceeEEEEEcCCCCcHHHHHHHHHhcccCCccccCCEEEEEECCCEEEcCCccCCCCCCCcc
Confidence            34667899999999999999999999999999999999999999888988999999999999999999988889999999


Q ss_pred             ccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCe
Q 026524          146 IYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPC  225 (237)
Q Consensus       146 ~~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v  225 (237)
                      +||..|++|++.++|+++|+|||||.+|++|+|||||++.+++|||++|+|||+|++|||||++|++++++.+++|.++|
T Consensus        90 i~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~~P~~~v  169 (188)
T 3ich_A           90 IYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDV  169 (188)
T ss_dssp             TTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCE
T ss_pred             ccCCcccccccCcccCCCeEEEEccCCCCCcccEEEEECCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCeECCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999889999999


Q ss_pred             EEEeeEEeeC
Q 026524          226 RIINSGELPL  235 (237)
Q Consensus       226 ~I~~cG~l~~  235 (237)
                      +|.+||+|..
T Consensus       170 ~I~~~~~l~~  179 (188)
T 3ich_A          170 IIADCGKIEV  179 (188)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEeEEEec
Confidence            9999999853

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.6e-55  Score=370.54  Aligned_cols=169  Identities=51%  Similarity=0.907  Sum_probs=157.9

Q ss_pred             ccccccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCC---------CcccCCCEEEEEEcCcEEEeCCCC
Q 026524           66 LQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEK---------GYGYKGCSFHRIIKDFMIQGGDFT  136 (237)
Q Consensus        66 ~~~~~~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~---------g~~Y~g~~f~Rii~~~~iqgGd~~  136 (237)
                      +....+++|||||+++++++|+|+||||++.||+||+||++||+|++         ++ |+|+.||||+|+|||||||++
T Consensus        14 ~~~~~~~~vf~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~-Y~g~~FhRVi~~fmiQgGd~~   92 (192)
T 2he9_A           14 LVPRGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLC-YKGSTFHRVVKNFMIQGGDFS   92 (192)
T ss_dssp             -----CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSC-CTTCBEEEEETTTEEEECCTT
T ss_pred             ccccCCCeEEEEEEECCEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCe-ECCCEEEEEECCCEEEcCccc
Confidence            34456899999999999999999999999999999999999998764         35 999999999999999999998


Q ss_pred             CCCCCCcccccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCC
Q 026524          137 EGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETS  216 (237)
Q Consensus       137 ~~~g~gg~s~~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~  216 (237)
                      .++|.|++++||..|+||++.++|+++|+|||||.+|++|+|||||++.+++|||++|+|||+|++|||||++|++++++
T Consensus        93 ~~~G~gg~siyg~~f~dE~~~l~h~~~G~lsMAn~gp~tngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~  172 (192)
T 2he9_A           93 EGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTD  172 (192)
T ss_dssp             TSSSSCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBC
T ss_pred             CCCCCCCCcccCCcccCccccCCCCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCccEEEEEEeCHHHHHHHHcCCcC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCeEEEeeEEeeC
Q 026524          217 RTDYPKVPCRIINSGELPL  235 (237)
Q Consensus       217 ~~~~P~~~v~I~~cG~l~~  235 (237)
                      .+++|.++|+|.+||+|..
T Consensus       173 ~~~~P~~~v~I~~~g~l~~  191 (192)
T 2he9_A          173 AASRPYADVRVIDCGVLAT  191 (192)
T ss_dssp             TTSCBSSCEEEEEEEECC-
T ss_pred             CCCCCcCCeEEEEeEEEcc
Confidence            9999999999999999863

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A

Probab=100.00  E-value=4.5e-55  Score=364.62  Aligned_cols=165  Identities=60%  Similarity=1.042  Sum_probs=158.2

Q ss_pred             cccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccC
Q 026524           69 KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYG  148 (237)
Q Consensus        69 ~~~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g  148 (237)
                      ..+++||||+++++|+.|+|+||||++.||+||+||++||+|++|++|+|+.||||+|+|||||||++.++|+|+.++|+
T Consensus         9 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g   88 (173)
T 2r99_A            9 RSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYG   88 (173)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTB
T ss_pred             cCCCEEEEEEEECCccceeEEEEECCCCCcHHHHHHHHHhcccCCceecCCEEEEeeCCCEEEeCCcCCCCCCCCCccCC
Confidence            34789999999999999999999999999999999999999888888999999999999999999999889999999999


Q ss_pred             CCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEE
Q 026524          149 SSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRII  228 (237)
Q Consensus       149 ~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~  228 (237)
                      ..|+||++.++|+++|+|||||.+|++++|||||++.+++|||++|+|||+|++|||||++|++++++ +++|.++|+|.
T Consensus        89 ~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~-~~~P~~~v~I~  167 (173)
T 2r99_A           89 KKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSK-DGKPKQKVIIA  167 (173)
T ss_dssp             SCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCSSCEEEE
T ss_pred             CcccCcccCcccCCCcEEEEccCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCC-CCCCCCCeEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999886 68999999999


Q ss_pred             eeEEee
Q 026524          229 NSGELP  234 (237)
Q Consensus       229 ~cG~l~  234 (237)
                      +||+|.
T Consensus       168 ~cG~l~  173 (173)
T 2r99_A          168 DCGEYV  173 (173)
T ss_dssp             EEEECC
T ss_pred             EeeeEC
Confidence            999984

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A

Probab=100.00  E-value=3.9e-55  Score=365.03  Aligned_cols=163  Identities=66%  Similarity=1.156  Sum_probs=156.4

Q ss_pred             cceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCc-------ccCCCEEEEEEcCcEEEeCCCCCCCCCCc
Q 026524           71 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGY-------GYKGCSFHRIIKDFMIQGGDFTEGDGTGG  143 (237)
Q Consensus        71 ~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~-------~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg  143 (237)
                      +++||||+++++++.|+|+||||++.||+||+||++||++++|+       +|+|+.||||+|+|||||||+..++|+|+
T Consensus         3 ~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg   82 (173)
T 2igv_A            3 RSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGG   82 (173)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSCC
T ss_pred             CCEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCccCccceECCCEEEEEECCCEEEcCCCCCCCCCCC
Confidence            68999999999999999999999999999999999999987773       29999999999999999999988899999


Q ss_pred             ccccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCC
Q 026524          144 ISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKV  223 (237)
Q Consensus       144 ~s~~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~  223 (237)
                      .++|+..|+||++.++|.++|+|||||.+|++|||||||++.+++|||++|+|||+|++|||||++|++++++ +++|.+
T Consensus        83 ~siyg~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~-~~~P~~  161 (173)
T 2igv_A           83 ESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQ-SGKPVK  161 (173)
T ss_dssp             CBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TSCCSS
T ss_pred             CccCCCcccCcccccCCCCCeEEEEeeCCCCCcceEEEEEcCCccccCCCeeEEEEEecCHHHHHHHHhCCCC-CCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999885 789999


Q ss_pred             CeEEEeeEEee
Q 026524          224 PCRIINSGELP  234 (237)
Q Consensus       224 ~v~I~~cG~l~  234 (237)
                      +|+|.+||+|+
T Consensus       162 ~v~I~~~g~l~  172 (173)
T 2igv_A          162 DCMIADCGQLK  172 (173)
T ss_dssp             CEEEEEEEEEC
T ss_pred             CEEEEEeEEEc
Confidence            99999999986

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*

Probab=100.00  E-value=5.9e-55  Score=362.98  Aligned_cols=162  Identities=60%  Similarity=1.037  Sum_probs=155.2

Q ss_pred             ccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcc-------cCCCEEEEEEcCcEEEeCCCCCCCCCC
Q 026524           70 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRIIKDFMIQGGDFTEGDGTG  142 (237)
Q Consensus        70 ~~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~-------Y~g~~f~Rii~~~~iqgGd~~~~~g~g  142 (237)
                      .+++|||||++++++.|+|+||||++.||+||+||++||+++ +++       |+|+.||||+|+|||||||+..++|+|
T Consensus         2 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~-g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~g   80 (170)
T 1qng_A            2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGE-KIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSG   80 (170)
T ss_dssp             CSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTC-EECTTSSEECCTTCBCCEEETTTEEEECCTTTSSSSC
T ss_pred             CCCEEEEEEeECCEeceeEEEEEcCCCCCHHHHHHHHHhccC-CcCccCccceECCCEEEEEECCCEEEcCCccCCCCCC
Confidence            378999999999999999999999999999999999999864 553       999999999999999999998889999


Q ss_pred             cccccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCC
Q 026524          143 GISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPK  222 (237)
Q Consensus       143 g~s~~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~  222 (237)
                      +.++|+..|+||++.++|+++|+|||||.+|++|+|||||++.+++|||++|+|||+|++|||||++|+++++ .+++|.
T Consensus        81 g~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t-~~~~P~  159 (170)
T 1qng_A           81 GESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYVK  159 (170)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTCCCS
T ss_pred             CccccCCcccccccccccCCCCEEEEeecCCCCcccEEEEECCCCcccCCCeeEEEEEECCHHHHHHHHhCCC-CCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999 589999


Q ss_pred             CCeEEEeeEEe
Q 026524          223 VPCRIINSGEL  233 (237)
Q Consensus       223 ~~v~I~~cG~l  233 (237)
                      ++|+|.+||+|
T Consensus       160 ~~v~I~~cG~l  170 (170)
T 1qng_A          160 RSVVITDCGEL  170 (170)
T ss_dssp             SCEEEEEEEEC
T ss_pred             CCeEEEeceeC
Confidence            99999999986

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}

Probab=100.00  E-value=2.1e-54  Score=363.77  Aligned_cols=168  Identities=61%  Similarity=1.067  Sum_probs=159.0

Q ss_pred             ccccccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCccc
Q 026524           66 LQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS  145 (237)
Q Consensus        66 ~~~~~~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s  145 (237)
                      .++..+++||||+++++++.|+|+||||++.||+||+||++||++++|++|+|+.||||+|+|||||||+..+++.++.+
T Consensus        17 ~~~~~~p~v~~di~i~~~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~s   96 (184)
T 3rdd_A           17 FQGMVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS   96 (184)
T ss_dssp             ----CCCEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSSSCCCB
T ss_pred             cccCCCCEEEEEEeECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCcCcccCCCEEEEccCCcEEEeCCCCCCCCCCCcc
Confidence            34456899999999999999999999999999999999999999888888999999999999999999998899999999


Q ss_pred             ccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCe
Q 026524          146 IYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPC  225 (237)
Q Consensus       146 ~~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v  225 (237)
                      +|+..|++|++.++|+++|+|+|||.+|++++|||||++.++++||++|+|||+|++|||||++|++++++ +++|.++|
T Consensus        97 i~g~~~~de~~~l~h~~~G~lsmA~~gp~s~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~-~g~P~~~v  175 (184)
T 3rdd_A           97 IYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSR-NGKTSKKI  175 (184)
T ss_dssp             TTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TSCCSSCE
T ss_pred             cCCCcccCcccccccCCCcEEEEEeCCCCCcccEEEEEeCCchhhCCCceEEEEEecCHHHHHHHHhcCCC-CCCCcCCe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999875 79999999


Q ss_pred             EEEeeEEee
Q 026524          226 RIINSGELP  234 (237)
Q Consensus       226 ~I~~cG~l~  234 (237)
                      +|.+||+|+
T Consensus       176 ~I~~cG~l~  184 (184)
T 3rdd_A          176 TIADCGQLE  184 (184)
T ss_dssp             EEEEEEECC
T ss_pred             EEEeCeEEC
Confidence            999999985

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*

Probab=100.00  E-value=2.1e-54  Score=364.20  Aligned_cols=164  Identities=63%  Similarity=1.043  Sum_probs=155.5

Q ss_pred             ccccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcc-------cCCCEEEEEEcCcEEEeCCCCCCCC
Q 026524           68 AKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRIIKDFMIQGGDFTEGDG  140 (237)
Q Consensus        68 ~~~~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~-------Y~g~~f~Rii~~~~iqgGd~~~~~g  140 (237)
                      ...+++||||+++++++.|+|+||||++.||+||+||++||+|++|++       |+|+.||||+|+|||||||++.++|
T Consensus        16 ~~~~~~v~~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~Y~g~~FhRVi~~f~iQgGd~~~~~G   95 (186)
T 2poy_A           16 FQGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRGDG   95 (186)
T ss_dssp             --CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSS
T ss_pred             cCCCCEEEEEEeECCEecccEEEEEeCCCCcHHHHHHHHHhcccCCccccCccceECCCEEEEEeCCCEEEeCCCCCCCC
Confidence            445889999999999999999999999999999999999999888875       9999999999999999999988899


Q ss_pred             CCcccccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCC
Q 026524          141 TGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDY  220 (237)
Q Consensus       141 ~gg~s~~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~  220 (237)
                      +|+.++||..|+||++.++|.++|+|||||.+|++|||||||++.++++||++|+|||+|++|||||++|++++++ +++
T Consensus        96 ~gg~si~g~~f~dE~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~-~~~  174 (186)
T 2poy_A           96 TGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQ-NGK  174 (186)
T ss_dssp             SCCCCTTC-CBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCT-TSC
T ss_pred             CCCCccCCCcccCcccccccCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCeeEEEEEecCHHHHHHHHhCCCC-CCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999984 789


Q ss_pred             CCCCeEEEeeEE
Q 026524          221 PKVPCRIINSGE  232 (237)
Q Consensus       221 P~~~v~I~~cG~  232 (237)
                      |.++|+|.+||+
T Consensus       175 P~~~v~I~~cG~  186 (186)
T 2poy_A          175 PTKSVCITASGV  186 (186)
T ss_dssp             CSSCEEEEEEEC
T ss_pred             CCCCEEEEeCCC
Confidence            999999999996

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A

Probab=100.00  E-value=1.9e-54  Score=362.04  Aligned_cols=163  Identities=61%  Similarity=1.062  Sum_probs=156.5

Q ss_pred             cceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCc-----ccCCCEEEEEEcCcEEEeCCCCCCCCCCccc
Q 026524           71 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGY-----GYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS  145 (237)
Q Consensus        71 ~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~-----~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s  145 (237)
                      +++||||+++++++.|+|+||||++.||+||+||++||+++.+.     +|+|+.||||+|+|||||||+..++|+|+++
T Consensus        10 ~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~s   89 (177)
T 1mzw_A           10 NPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVAS   89 (177)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCEETTEECSSTTCBCCEEETTTEEEECCTTTSSSCCCCC
T ss_pred             CCEEEEEEEECCeeceeEEEEEcCCCCcHHHHHHHHHHhcccCCcCccceECCCEEEEEECCCEEEcCCcccCCCCCCCc
Confidence            78999999999999999999999999999999999999865531     4999999999999999999998889999999


Q ss_pred             ccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCe
Q 026524          146 IYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPC  225 (237)
Q Consensus       146 ~~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v  225 (237)
                      +||..|+||++.++|+++|+|||||.+|++++|||||++.+++|||++|+|||+|++|||||++|++++++++++|.++|
T Consensus        90 i~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v  169 (177)
T 1mzw_A           90 IYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPV  169 (177)
T ss_dssp             TTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCE
T ss_pred             cCCCcccCcccccccCCCCEEEEccCCCCCcceEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCCCCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999899999999


Q ss_pred             EEEeeEEe
Q 026524          226 RIINSGEL  233 (237)
Q Consensus       226 ~I~~cG~l  233 (237)
                      +|.+||+|
T Consensus       170 ~I~~cG~l  177 (177)
T 1mzw_A          170 VISQCGEM  177 (177)
T ss_dssp             EEEEEEEC
T ss_pred             EEEeceeC
Confidence            99999986

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}

Probab=100.00  E-value=1.3e-53  Score=361.41  Aligned_cols=166  Identities=54%  Similarity=0.900  Sum_probs=159.0

Q ss_pred             ccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCC
Q 026524           70 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGS  149 (237)
Q Consensus        70 ~~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~  149 (237)
                      .+++|||||++++++.|+|+||||++.||+||+||++||+|+++++|+|+.||||+|+|||||||+..+++.++.++|+.
T Consensus        26 ~~p~v~~di~i~~t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~  105 (193)
T 3k2c_A           26 ASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGRSIYGE  105 (193)
T ss_dssp             CTTCEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTSSSTTCBEEEEETTTEEEECCTTTSSSSCCCCTTSS
T ss_pred             CCCEEEEEEeECCEEeeEEEEEEcCCCChHHHHHHHHHhccccCCcccCCEEEEEeCCCEEEeCCCCCCCCcCCcccCCC
Confidence            47899999999999999999999999999999999999998888889999999999999999999888999999999999


Q ss_pred             CCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCC--CCeEE
Q 026524          150 SFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPK--VPCRI  227 (237)
Q Consensus       150 ~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~--~~v~I  227 (237)
                      .|++|++.++|+++|+|+|||.+|++++|||||++.++++||++|+|||+|++|||||++|++++++ +++|.  ++|+|
T Consensus       106 ~f~dE~~~l~h~~~G~lsmAn~gp~t~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~-~g~P~~~~~v~I  184 (193)
T 3k2c_A          106 KFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSE-SGQVKKGYRIEI  184 (193)
T ss_dssp             CBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCCTTCCEEE
T ss_pred             cccccccccccCCCcEEEEEeCCCCCCccEEEEECCCCcccCCCccEEEEEeCCHHHHHHHHhcCCC-CCcCccCccEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999998 68999  99999


Q ss_pred             EeeEEeeCC
Q 026524          228 INSGELPLD  236 (237)
Q Consensus       228 ~~cG~l~~~  236 (237)
                      .+||+|+.+
T Consensus       185 ~~cG~l~~~  193 (193)
T 3k2c_A          185 RDCGVLGSN  193 (193)
T ss_dssp             EEEEECC--
T ss_pred             EEceEeCCC
Confidence            999999753

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1

Probab=100.00  E-value=5.3e-54  Score=357.87  Aligned_cols=163  Identities=57%  Similarity=0.981  Sum_probs=125.5

Q ss_pred             ccceEEEEEEEC--Ceec---eeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcc
Q 026524           70 VTTKVFFDVDIG--GKPA---GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI  144 (237)
Q Consensus        70 ~~~~v~~di~~~--~t~~---G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~  144 (237)
                      ++ +|||||+++  ++..   |+|+||||++.||+||+||++||+|++|++|+|+.||||+|+|||||||+..++|+|+.
T Consensus         2 it-~vf~di~i~~~~~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~   80 (172)
T 2c3b_A            2 MS-QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGR   80 (172)
T ss_dssp             CC-CEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECC----------
T ss_pred             ce-EEEEEEEeCCCCceecccccEEEEEcCCCCcHHHHHHHHHhccCCCcccCCCEEEEEeCCCEEEeCCcCCCCCCCCc
Confidence            46 899999998  6544   99999999999999999999999988888899999999999999999997778999999


Q ss_pred             cccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEc--CHHHHHHhhcCCCCCCC-CC
Q 026524          145 SIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVID--GMDVVRKLESVETSRTD-YP  221 (237)
Q Consensus       145 s~~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~Vie--G~dvl~~I~~~~t~~~~-~P  221 (237)
                      ++||..|++|++.++|+++|+|||||.+|++++|||||++.+++|||++|+|||+|++  |||||++|++++++..+ +|
T Consensus        81 si~g~~f~dE~~~~~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~~~G~dvv~~I~~~~t~~~~~~P  160 (172)
T 2c3b_A           81 SIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRS  160 (172)
T ss_dssp             ------------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTTSCCCS
T ss_pred             ccCCCcccCcccccccCCCeEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEecCCHHHHHHHHhCCCCCCCccC
Confidence            9999999999999999999999999999999999999999999999999999999999  99999999999998765 99


Q ss_pred             CCCeEEEeeEEe
Q 026524          222 KVPCRIINSGEL  233 (237)
Q Consensus       222 ~~~v~I~~cG~l  233 (237)
                      .++|+|.+||+|
T Consensus       161 ~~~v~I~~cG~l  172 (172)
T 2c3b_A          161 NTRPKIVNCGEL  172 (172)
T ss_dssp             SSCCEEEEEEEC
T ss_pred             CCCeEEEeCeeC
Confidence            999999999986

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=1.6e-52  Score=362.39  Aligned_cols=163  Identities=51%  Similarity=0.951  Sum_probs=156.4

Q ss_pred             cceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCc-----ccCCCEEEEEEcCcEEEeCCCCCCCCCCccc
Q 026524           71 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGY-----GYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS  145 (237)
Q Consensus        71 ~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~-----~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s  145 (237)
                      +++||||+++++++.|+|+||||.+.||+||+||++||+++++.     +|+|+.||||+|+|||||||++.++|+|+.+
T Consensus        59 ~~~V~~disi~~t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~g~~~~Y~gt~FHRVi~~FmiQgGD~~~g~G~Gg~s  138 (229)
T 1z81_A           59 NPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLS  138 (229)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTTEEEECCTTTSSSCCCCB
T ss_pred             CcEEEEEEeECCeecccEEEEEcCCCCCHHHHHHHHHhhCCCCCcCCCceECCCEEEEEeCCCEEEcCCCcCCCCCCCCc
Confidence            78999999999999999999999999999999999999876542     3999999999999999999998899999999


Q ss_pred             ccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEE--cCHHHHHHhhcCCCCCC-CCCC
Q 026524          146 IYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVI--DGMDVVRKLESVETSRT-DYPK  222 (237)
Q Consensus       146 ~~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~Vi--eG~dvl~~I~~~~t~~~-~~P~  222 (237)
                      +||..|+||++.++|+++|+|||||.+|++++|||||++.++++||++|+|||+|+  +|||||++|++++++.+ ++|.
T Consensus       139 iyg~~f~dE~~~l~h~~~G~LsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~t~~~~~~P~  218 (229)
T 1z81_A          139 IYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPK  218 (229)
T ss_dssp             TTBSCCCCCCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTCCBS
T ss_pred             cCCCcccccccccccCCCcEEEeccCCCCCcccEEEEECCCCcccCCCeeEEEEEEecCcHHHHHHHHhCCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999  99999999999999987 9999


Q ss_pred             CCeEEEeeEEe
Q 026524          223 VPCRIINSGEL  233 (237)
Q Consensus       223 ~~v~I~~cG~l  233 (237)
                      ++|+|.+||+|
T Consensus       219 ~~V~I~~cG~l  229 (229)
T 1z81_A          219 IPINVVECGEL  229 (229)
T ss_dssp             SCEEEEEEEEC
T ss_pred             CCeEEEeCeeC
Confidence            99999999986

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}

Probab=100.00  E-value=1.4e-51  Score=358.19  Aligned_cols=165  Identities=27%  Similarity=0.478  Sum_probs=150.7

Q ss_pred             cccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccC-----------C----C--cccCCCEEEEEEcCcEEE
Q 026524           69 KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGE-----------K----G--YGYKGCSFHRIIKDFMIQ  131 (237)
Q Consensus        69 ~~~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~-----------~----g--~~Y~g~~f~Rii~~~~iq  131 (237)
                      ..+++|||||.+++++.|+|+||||.+.||+||+||++||+|+           +    |  ++|+|+.||||+|+||||
T Consensus        12 ~~~p~v~~di~i~~t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHRVi~~FmiQ   91 (234)
T 2ose_A           12 GKNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYIV   91 (234)
T ss_dssp             CSSCEEEEEEEETTEEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCBCCEEETTTEEE
T ss_pred             CCCCEEEEEEEECCcccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcEEEEEECCCEEE
Confidence            3488999999999999999999999999999999999999976           4    5  669999999999999999


Q ss_pred             eCCCCCCCCCCcccccCCC-----CCCCcccccCCCCeEEEEee----CCCCCCCceeEEEecC------CCCCCCCCeE
Q 026524          132 GGDFTEGDGTGGISIYGSS-----FEDESFVLKHVGPGVLSMAN----AGPNTNGSQFFICTVK------TPWLDNRHVV  196 (237)
Q Consensus       132 gGd~~~~~g~gg~s~~g~~-----~~de~~~~~h~~~G~lsma~----~g~~s~gSqFfItl~~------~~~ld~~~~v  196 (237)
                      |||+..++|+|+.++||..     |+  ++.++|.++|+|||||    .+|+++||||||++.+      ++|||++|+|
T Consensus        92 gGd~~~g~G~Gg~siyg~~~~p~~f~--~~~l~h~~~G~lsMAn~~~~~gpntngSQFFIt~~~~~~~~g~p~LDg~~tV  169 (234)
T 2ose_A           92 SGDIYNSNGSSAGTVYCDEPIPPVFG--DYFYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVV  169 (234)
T ss_dssp             ECCCC----CCCCCTTTTCCBCCCCC--SCCCCSCSTTEEEECCEECTTSCEEBCSCEEEESSCCCTTSSGGGSCTTSEE
T ss_pred             cCCccCCCCCCCccccCCccCccccc--CcCccCCCCCEEEEecccccCCCCCccceEEEEecCccccCCCcccCCCeeE
Confidence            9998789999999999987     76  5688999999999999    8999999999999999      9999999999


Q ss_pred             EEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeeEEeeC
Q 026524          197 FGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPL  235 (237)
Q Consensus       197 FG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~cG~l~~  235 (237)
                      ||+|++|||||++|++++++.+++|.++|+|.+||++.+
T Consensus       170 FG~Vv~GmdVv~~I~~~~t~~~~~P~~~V~I~~~~~l~~  208 (234)
T 2ose_A          170 IGQVYGGLDVLDKINSMIKPYAGRKYPTFSIGKCGAYLD  208 (234)
T ss_dssp             EEEEEECHHHHHHHHHHTCCCTTCCCCCEEEEEEEECCC
T ss_pred             EEEEeCCHHHHHHHHhCCcCCCCCccCCEEEEEEEEecC
Confidence            999999999999999999998899999999999999864

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=100.00  E-value=2.3e-49  Score=362.17  Aligned_cols=164  Identities=66%  Similarity=1.084  Sum_probs=157.0

Q ss_pred             cceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCc--------ccCCCEEEEEEcCcEEEeCCCCCCCCCC
Q 026524           71 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGY--------GYKGCSFHRIIKDFMIQGGDFTEGDGTG  142 (237)
Q Consensus        71 ~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~--------~Y~g~~f~Rii~~~~iqgGd~~~~~g~g  142 (237)
                      +++||||+++++++.|+|+||||++.||+||+||++||++++|+        +|+|+.||||+|+|||||||++.++|+|
T Consensus        15 ~~~v~~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~~~g~g   94 (370)
T 1ihg_A           15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTG   94 (370)
T ss_dssp             SCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCeEEEEEEECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCCCCCCC
Confidence            78999999999999999999999999999999999999986542        3999999999999999999999899999


Q ss_pred             cccccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCC
Q 026524          143 GISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPK  222 (237)
Q Consensus       143 g~s~~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~  222 (237)
                      +.++||..|++|++.++|+++|+|+|||.||++||||||||+.++||||++|+|||+|++||+||++|++++++. ++|.
T Consensus        95 ~~~~~~~~~~~e~~~~~~~~~g~l~ma~~~~~~~~sqffi~~~~~~~ld~~~~vfG~v~~g~~v~~~i~~~~~~~-~~P~  173 (370)
T 1ihg_A           95 GESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKG-EKPA  173 (370)
T ss_dssp             CCBTTBSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEET-TEES
T ss_pred             CCCCCCCCcCCCcCCcCCCCCeEEEEeeCCCCCCCceEEEeCCCCcccCCCceEEEEEecCHHHHHHHHcCCCCC-Cccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999886 9999


Q ss_pred             CCeEEEeeEEeeC
Q 026524          223 VPCRIINSGELPL  235 (237)
Q Consensus       223 ~~v~I~~cG~l~~  235 (237)
                      ++|+|.+||++..
T Consensus       174 ~~v~I~~~g~l~~  186 (370)
T 1ihg_A          174 KLCVIAECGELKE  186 (370)
T ss_dssp             SCEEEEEEEEECT
T ss_pred             eeEEEEEEEEecc
Confidence            9999999999853

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A

Probab=100.00  E-value=1.5e-49  Score=334.50  Aligned_cols=155  Identities=44%  Similarity=0.669  Sum_probs=146.0

Q ss_pred             EEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCC
Q 026524           75 FFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDE  154 (237)
Q Consensus        75 ~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de  154 (237)
                      ++++.++ |+.|+|+||||++.||+||+||++||+  .|+ |+|+.||||+|+|||||||+. +++.|+.++||..|++|
T Consensus        16 ~~~v~i~-t~~G~i~ieL~~~~aP~t~~NF~~L~~--~g~-Y~g~~FhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE   90 (185)
T 2poe_A           16 FQGVRII-TNYGDLKFELFCSQCPKACKNFLALSA--SGY-YKNTIFHKNIKGFIIQGGDPT-GTGKGGESIYGRYFDDE   90 (185)
T ss_dssp             CCEEEEE-ETTEEEEEEECTTTCHHHHHHHHHHHH--TTT-TTTEEEEEECTTSEEEEEETT-SSSSCCCBTTBSCBCCC
T ss_pred             ceEEEEE-ecCccEEEEEeCCCCcHHHHHHHHHhc--cCC-CCCCEEEEEECCCEEEcCCCC-CCCCCCCccCCCccccc
Confidence            3455554 799999999999999999999999995  788 999999999999999999987 78899999999999999


Q ss_pred             c-ccccCCCCeEEEEeeCC----CCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEe
Q 026524          155 S-FVLKHVGPGVLSMANAG----PNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN  229 (237)
Q Consensus       155 ~-~~~~h~~~G~lsma~~g----~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~  229 (237)
                      . ..++|+++|+|||||.+    |+++||||||++.++++||++|+|||+|++|||||++|++++++.+++|.++|+|.+
T Consensus        91 ~~~~l~h~~~G~lsmA~~g~~~~p~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~~  170 (185)
T 2poe_A           91 IYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKD  170 (185)
T ss_dssp             CCTTSCCCSTTEEEECCSCC-CCCSCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTSCBSSCCEEEE
T ss_pred             ccCCCccCCCeEEEEecCCCCCCCCCccceEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCcCCCeEEEE
Confidence            8 68899999999999999    999999999999999999999999999999999999999999998999999999999


Q ss_pred             eEEee
Q 026524          230 SGELP  234 (237)
Q Consensus       230 cG~l~  234 (237)
                      |+++.
T Consensus       171 ~~i~~  175 (185)
T 2poe_A          171 IVIHS  175 (185)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99985

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*

Probab=100.00  E-value=3.1e-49  Score=325.87  Aligned_cols=148  Identities=49%  Similarity=0.773  Sum_probs=142.0

Q ss_pred             eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcc-cccCC
Q 026524           83 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLKHV  161 (237)
Q Consensus        83 t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~-~~~h~  161 (237)
                      |+.|+|+||||++.||+||+||++||+  .|+ |+|+.||||+|+|||||||+. +++.|+.++||..|++|.. .++|+
T Consensus         7 T~~G~i~ieL~~~~aP~t~~NF~~L~~--~g~-Y~g~~fhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~~~~l~h~   82 (161)
T 2ok3_A            7 TDVGDIKIEVFCERTPKTCENFLALCA--SNY-YNGCIFHRNIKGFMVQTGDPT-GTGRGGNSIWGKKFEDEYSEYLKHN   82 (161)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHH--TTT-TTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCCCCTTCCSC
T ss_pred             eCCccEEEEEcCCCCcHHHHHHHHHhh--hcc-cCCCEEEEEECCCEEecCCCC-CCCCCCCcccCCccccccCcCcCcC
Confidence            789999999999999999999999995  678 999999999999999999987 7889999999999999986 78999


Q ss_pred             CCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCC-CCCCCCeEEEeeEEee
Q 026524          162 GPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRT-DYPKVPCRIINSGELP  234 (237)
Q Consensus       162 ~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~-~~P~~~v~I~~cG~l~  234 (237)
                      ++|+|||||.+|++++|||||++.++++||++|+|||+|++|||||++|++++++.+ ++|.++|+|.+|.++.
T Consensus        83 ~~G~lsma~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~P~~~v~I~~~~i~~  156 (161)
T 2ok3_A           83 VRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHA  156 (161)
T ss_dssp             STTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEEEC
T ss_pred             CCeEEEEecCCCCCcceEEEEEcCCCCccCCCEeEEEEEeCCHHHHHHHHhCCccCCCCCcCCCeEEEEEEEec
Confidence            999999999999999999999999999999999999999999999999999999987 9999999999999985

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A

Probab=100.00  E-value=3.5e-49  Score=327.06  Aligned_cols=154  Identities=50%  Similarity=0.876  Sum_probs=145.4

Q ss_pred             cceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCC
Q 026524           71 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSS  150 (237)
Q Consensus        71 ~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~  150 (237)
                      ++.|.|+     |+.|+|+||||++.||+||+||++||+  +|+ |+|+.||||+|+|||||||+. +++.++.++|+..
T Consensus        11 ~~~v~l~-----t~~G~i~ieL~~~~aP~t~~NF~~L~~--~g~-Y~g~~fhRvi~~f~iQgGd~~-~~g~gg~si~g~~   81 (166)
T 2x7k_A           11 PPNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELAR--RGY-YNGTKFHRIIKDFMIQGGDPT-GTGRGGASIYGKQ   81 (166)
T ss_dssp             CSEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHH--HTT-TTTEECCEEETTTEEEECCTT-SSSSCCCCTTSSC
T ss_pred             CCEEEEE-----eCCCcEEEEEccCCCCHHHHHHHHHHh--cCC-CCCCEEEEEECCCEEEcCCCC-CCCCCCCccCCCc
Confidence            4567766     578999999999999999999999995  788 999999999999999999987 7889999999999


Q ss_pred             CCCCcc-cccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEe
Q 026524          151 FEDESF-VLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN  229 (237)
Q Consensus       151 ~~de~~-~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~  229 (237)
                      |++|.. .++|.++|+|||||.+|++++|||||++.++++||++|+|||+|++|||||++|++++++.+++|.++|+|.+
T Consensus        82 ~~dE~~~~l~h~~~G~lsmAn~gp~s~gSQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~i~I~~  161 (166)
T 2x7k_A           82 FEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIK  161 (166)
T ss_dssp             BCCCCCTTSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTSCBCTTSCBSSCCEEEE
T ss_pred             cccccccccCCCCCeEEEEeeCCCCCccceEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEEE
Confidence            999984 8899889999999999999999999999999999999999999999999999999999998899999999999


Q ss_pred             eEEe
Q 026524          230 SGEL  233 (237)
Q Consensus       230 cG~l  233 (237)
                      |.++
T Consensus       162 ~~i~  165 (166)
T 2x7k_A          162 AYPS  165 (166)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            9986

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1

Probab=100.00  E-value=5.4e-49  Score=324.16  Aligned_cols=147  Identities=50%  Similarity=0.833  Sum_probs=141.3

Q ss_pred             eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcc-cccCC
Q 026524           83 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLKHV  161 (237)
Q Consensus        83 t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~-~~~h~  161 (237)
                      |+.|+|+||||++.||+||+||++||+  .|+ |+|+.||||+|+|||||||+. ++|.|+.++||..|++|+. .++|.
T Consensus        12 T~~G~i~ieL~~~~aP~t~~NF~~L~~--~g~-Y~g~~fhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~~~~l~h~   87 (160)
T 2fu0_A           12 TTMGDIHISLFYKECKKTVQNFSVHSI--NGY-YNNCIFHRVIKHFMVQTGDPS-GDGTGGESIWGNEFEDEFFDHLNHS   87 (160)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHH--TTT-TTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCCCBTTBCSS
T ss_pred             ecCccEEEEEeCCCChHHHHHHHHHhc--cCc-cCCCEEEEEECCCEEEeCCcC-CCCCCCCcccCCCccccccCCcccC
Confidence            689999999999999999999999995  788 999999999999999999986 7889999999999999998 68999


Q ss_pred             CCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeeEEe
Q 026524          162 GPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL  233 (237)
Q Consensus       162 ~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~cG~l  233 (237)
                      ++|+|||||.+|++++|||||++.++++||++|+|||+|++|||||++|++++++.+++|.++|+|.+|.++
T Consensus        88 ~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~~v~  159 (160)
T 2fu0_A           88 KPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKIN  159 (160)
T ss_dssp             SSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEEEEEC
T ss_pred             CceEEEEecCCCCCcccEEEEECCCCCccCCCcEEEEEEEcCHHHHHHHHhCCcCCCCCcCCCeEEEEEEEe
Confidence            999999999999999999999999999999999999999999999999999999989999999999999886

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=2.2e-48  Score=329.94  Aligned_cols=149  Identities=48%  Similarity=0.794  Sum_probs=142.4

Q ss_pred             eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCc-ccccCC
Q 026524           83 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDES-FVLKHV  161 (237)
Q Consensus        83 t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~-~~~~h~  161 (237)
                      |+.|+|+||||++.||+||+||++||+  +|+ |+|+.||||+|+|||||||+. ++|.|+.++||..|++|. ..++|+
T Consensus        26 T~~G~I~ieL~~~~aP~tv~NF~~L~~--~g~-Ydg~~FhRVi~~f~iQgGd~~-~~g~Gg~si~g~~f~dE~~~~l~h~  101 (197)
T 1zkc_A           26 TNKGDLNLELHCDLTPKTCENFIRLCK--KHY-YDGTIFHRSIRNFVIQGGDPT-GTGTGGESYWGKPFKDEFRPNLSHT  101 (197)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHH--TTT-TTTEEEEEEETTTEEEECCTT-SSSSCCCBTTBSCBCCCCCTTCCSC
T ss_pred             eCCccEEEEEcCCCCcHHHHHHHHHHh--cCC-CCCCEEEEEeCCCEEEcCCCC-CCCCCCCccCCCccccccCcCcCCC
Confidence            589999999999999999999999995  788 999999999999999999987 788999999999999994 788999


Q ss_pred             CCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCC-CCCCCCeEEEeeEEeeC
Q 026524          162 GPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRT-DYPKVPCRIINSGELPL  235 (237)
Q Consensus       162 ~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~-~~P~~~v~I~~cG~l~~  235 (237)
                      ++|+|||||.+|+++||||||++.++++||++|+|||+|++|||||++|++++++.+ ++|.++|+|.+|+++.+
T Consensus       102 ~~G~lsMAn~gp~sngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~i~I~~~~v~~d  176 (197)
T 1zkc_A          102 GRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVFVD  176 (197)
T ss_dssp             STTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEEEEC
T ss_pred             CceEEEEecCCCCCcccEEEEEcCCCCccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCcCCCeEEEEEEEEcC
Confidence            999999999999999999999999999999999999999999999999999999987 99999999999999864

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=1.3e-48  Score=331.30  Aligned_cols=155  Identities=43%  Similarity=0.708  Sum_probs=145.2

Q ss_pred             cceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCC
Q 026524           71 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSS  150 (237)
Q Consensus        71 ~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~  150 (237)
                      ++.|.|+     |+.|+|+||||++.||+||+||++||+  +|+ |+|+.||||+|+|||||||+. ++|.|+.++||..
T Consensus        38 ~~~V~l~-----T~~G~I~ieL~~~~aP~tv~NF~~L~~--~g~-Y~g~~FhRVi~~f~iQgGd~~-~~g~gg~si~g~~  108 (196)
T 2b71_A           38 RGYITIY-----TNLGDFEVELYWYHSPKTCLNFYTLCE--MGF-YDNTIFHRVIPNFVIQGGDPT-GTGKGGKSIYGEY  108 (196)
T ss_dssp             SCEEEEE-----ETTEEEEEEECTTTSHHHHHHHHHHHH--TTT-TTTEEEEEEETTTEEEEEETT-SSSSCCCBTTBSC
T ss_pred             CcEEEEE-----eCCCCEEEEEeCCCCcHHHHHHHHHhh--cCC-cCCCEEEEEeCCcEEEcCCCC-CCCCCCCccCCCc
Confidence            5677776     688999999999999999999999995  788 999999999999999999997 7889999999999


Q ss_pred             CCCCc-ccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEe
Q 026524          151 FEDES-FVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN  229 (237)
Q Consensus       151 ~~de~-~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~  229 (237)
                      |++|. ..++|+++|+||||+.+|+++||||||++.++++||++|+|||+|++|||||++|++++++.+++|.++|+|.+
T Consensus       109 ~~dE~~~~l~h~~~G~lsMAn~gpns~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~i~I~~  188 (196)
T 2b71_A          109 FEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILR  188 (196)
T ss_dssp             BCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEE
T ss_pred             ccccccCCcCcCCCeEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEecCHHHHHHHHhCCcCCCCCCCCCeEEEE
Confidence            99995 57899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEee
Q 026524          230 SGELP  234 (237)
Q Consensus       230 cG~l~  234 (237)
                      |+++.
T Consensus       189 ~~i~~  193 (196)
T 2b71_A          189 TSTAV  193 (196)
T ss_dssp             EEC--
T ss_pred             EEEec
Confidence            99985

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1

Probab=100.00  E-value=4.4e-48  Score=326.86  Aligned_cols=146  Identities=48%  Similarity=0.749  Sum_probs=136.7

Q ss_pred             eeceeEEEEecCCCChhHHHHHHHHhccCC-------------CcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCC
Q 026524           83 KPAGRIVMGLFGDVVPKTAENFRALCTGEK-------------GYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGS  149 (237)
Q Consensus        83 t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~-------------g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~  149 (237)
                      |+.|+|+||||++.||+||+||++||+|++             ++ |+|+.||||+|+|||||||+. ++|+|+   +|.
T Consensus        30 t~~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~-Y~g~~FhRVi~~fmiQgGd~~-g~G~gg---~g~  104 (191)
T 1w74_A           30 TNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPF-YDGAVFHRVIQGFMIQGGDPT-GTGRGG---PGY  104 (191)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCS-STTEEEEEEETTTEEEECCTT-SSSSCC---SSC
T ss_pred             ecceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCc-cCCCEEEEEeCCCEEecCCCC-CCCCCC---CCC
Confidence            689999999999999999999999998754             45 999999999999999999985 677776   588


Q ss_pred             CCCCCc-ccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEc--CHHHHHHhhcCCCCCCCCCCCCeE
Q 026524          150 SFEDES-FVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVID--GMDVVRKLESVETSRTDYPKVPCR  226 (237)
Q Consensus       150 ~~~de~-~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~Vie--G~dvl~~I~~~~t~~~~~P~~~v~  226 (237)
                      .|+||. +.++|+++|+|||||.+|++|||||||++.+++|||++|+|||+|++  |||||++|++++++.+++|.++|+
T Consensus       105 ~f~dE~~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~~Gmdvv~~I~~~~t~~~~~P~~~v~  184 (191)
T 1w74_A          105 KFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVV  184 (191)
T ss_dssp             CBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTTSCBSSCCE
T ss_pred             ccccccccCCCcCCCcEEEEeeCCCCCccceEEEEcCCCcccCCCeeEEEEEEECCCHHHHHHHHcCCcCCCCCcCCCeE
Confidence            899994 68999999999999999999999999999999999999999999999  999999999999998999999999


Q ss_pred             EEeeEEe
Q 026524          227 IINSGEL  233 (237)
Q Consensus       227 I~~cG~l  233 (237)
                      |.+|+++
T Consensus       185 I~~~~i~  191 (191)
T 1w74_A          185 IESITIS  191 (191)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            9999985

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=2.1e-48  Score=325.12  Aligned_cols=148  Identities=54%  Similarity=0.833  Sum_probs=140.7

Q ss_pred             CCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcc-ccc
Q 026524           81 GGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLK  159 (237)
Q Consensus        81 ~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~-~~~  159 (237)
                      ..|+.|+|+||||++.||+||+||++||+  .++ |+|+.||||+|+|||||||+. ++|.|+.++||..|++|.+ .++
T Consensus        26 ~~t~~G~i~ieL~~~~aP~t~~NF~~L~~--~g~-Y~g~~FhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~~~~l~  101 (176)
T 2a2n_A           26 IHTSMGDIHTKLFPVECPKTVENFCVHSR--NGY-YNGHTFHRIIKGFMIQTGDPT-GTGMGGESIWGGEFEDEFHSTLR  101 (176)
T ss_dssp             EEETTEEEEEEECTTTCHHHHHHHHHHHH--TTT-TTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCCCCTTCC
T ss_pred             EEecCccEEEEEeCCCChHHHHHHHHHhh--cCc-cCCCEEEEEECCcEEEccCCC-CCCCCCCcccCCccccccccccc
Confidence            34789999999999999999999999995  788 999999999999999999986 7889999999999999998 689


Q ss_pred             CCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCC-CCCCCCCCeEEEeeEE
Q 026524          160 HVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETS-RTDYPKVPCRIINSGE  232 (237)
Q Consensus       160 h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~-~~~~P~~~v~I~~cG~  232 (237)
                      |.++|+|+|||.+|++++|||||++.+++|||++|+|||+|++|||||++|++++++ .+++|.++|+|.+|.+
T Consensus       102 h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~v~I~~v~v  175 (176)
T 2a2n_A          102 HDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITV  175 (176)
T ss_dssp             SCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEEEEE
T ss_pred             cCCceEEEEEeCCCCCcccEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHcCCccCCCCccCCCeEEEEEEE
Confidence            999999999999999999999999999999999999999999999999999999998 6899999999999975

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}

Probab=100.00  E-value=3.5e-48  Score=329.99  Aligned_cols=156  Identities=49%  Similarity=0.852  Sum_probs=146.8

Q ss_pred             cceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCC
Q 026524           71 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSS  150 (237)
Q Consensus        71 ~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~  150 (237)
                      ++.|.|+     |++|+|+||||++.||+||+||++||+  +++ |+|+.||||+|+|||||||+. +++.++.++|+..
T Consensus        11 ~~~V~l~-----T~~G~I~ieL~~d~aP~tv~NF~~L~~--~g~-Ydg~~FhRVi~~F~iQgGd~~-~~g~gg~si~g~~   81 (203)
T 2k7n_A           11 PPNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELAR--RGY-YNGTKFHRIIKDFMIQGGDPT-GTGRGGASIYGKQ   81 (203)
T ss_dssp             CSEEEEE-----ESSCEEEEEECTTTCTTHHHHHHHHHH--HTC-GGGCEEEEEETTTEEEEECSS-SSSSCCCTTSCSC
T ss_pred             CCEEEEE-----eCCCcEEEEEccCCCcHHHHHHHHHHh--cCc-cCCCEEEEEeCCcEEEcCCCC-CCCCCCCccCCCc
Confidence            4567776     578999999999999999999999995  788 999999999999999999987 7888999999999


Q ss_pred             CCCCcc-cccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEe
Q 026524          151 FEDESF-VLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN  229 (237)
Q Consensus       151 ~~de~~-~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~  229 (237)
                      |++|.. .++|.++|+|+|||.+|++++|||||++.++++||++|+|||+|++|||||++|++++++.+++|.++|+|.+
T Consensus        82 f~dE~~~~l~h~~~G~lsMAn~gpnsngSQFFIt~~~~~~LDg~~tVFG~VveGmdvv~kI~~~~t~~~~~P~~~V~I~~  161 (203)
T 2k7n_A           82 FEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIK  161 (203)
T ss_dssp             BCCCCCCSSCCCSSCEEEEEESSTTCEEEEEEEESSCCCSSTTTSCEEEEEESCHHHHHHHHSCCEEETTEECCCCBEEE
T ss_pred             ccccccccccCCCCeEEEEeeCCCCCcccEEEEEcCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEEE
Confidence            999984 8899889999999999999999999999999999999999999999999999999999998899999999999


Q ss_pred             eEEeeC
Q 026524          230 SGELPL  235 (237)
Q Consensus       230 cG~l~~  235 (237)
                      |++++.
T Consensus       162 ~~v~~~  167 (203)
T 2k7n_A          162 AYPSGG  167 (203)
T ss_dssp             EEECCC
T ss_pred             EEEEec
Confidence            999864

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}

Probab=100.00  E-value=8.7e-48  Score=327.60  Aligned_cols=149  Identities=38%  Similarity=0.618  Sum_probs=136.2

Q ss_pred             eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeC-----CCCCCCCCCccccc-------CCC
Q 026524           83 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGG-----DFTEGDGTGGISIY-------GSS  150 (237)
Q Consensus        83 t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgG-----d~~~~~g~gg~s~~-------g~~  150 (237)
                      |+.|+|+||||++.||+||+||++||+  .|+ |+|+.||||+|+||||||     |+. ++|.|+.++|       |..
T Consensus        13 T~~G~i~ieL~~~~aP~t~~NF~~L~~--~g~-Ydg~~FhRvi~~f~iQgG~~~~~Dp~-~~g~gg~si~~~~~~~~g~~   88 (201)
T 3bo7_A           13 TTQGSLNIELHADMAPRACDSFLRLCA--VKY-FDDTIFHRCIRNFMIQGGRAELRQPS-KKKEVQQSPRSISGFPGGAP   88 (201)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHH--TTT-TTTCBEEEEETTTEEEECCGGGCCC--------CCSSCCCSSTTCCC
T ss_pred             eCCCCEEEEEcCCCCcHHHHHHHHHHh--cCc-cCCCEEEEeeCCCEEEcCcccccCCC-CCCCCCccccccccccCCCc
Confidence            589999999999999999999999995  788 999999999999999999     987 7889999999       889


Q ss_pred             CCCCc-ccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEe
Q 026524          151 FEDES-FVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN  229 (237)
Q Consensus       151 ~~de~-~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~  229 (237)
                      |++|. ..++|+.+|+|||||.+|+++||||||++.++++||++|+|||+|++|||||++|++++++.+++|.++|+|.+
T Consensus        89 f~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~i~I~~  168 (201)
T 3bo7_A           89 FEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPLKPPKVEE  168 (201)
T ss_dssp             BCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTCCBCTTSCBSSCCBEEE
T ss_pred             ccCcccCCCCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEecCHHHHHHHHhCCcCCCCCcCCCeEEEE
Confidence            99995 68899999999999999999999999999999999999999999999999999999999998999999999999


Q ss_pred             eEEeeC
Q 026524          230 SGELPL  235 (237)
Q Consensus       230 cG~l~~  235 (237)
                      |+++.+
T Consensus       169 ~~v~~d  174 (201)
T 3bo7_A          169 IIVFKN  174 (201)
T ss_dssp             EEEEEC
T ss_pred             EEEEcC
Confidence            999864

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}

Probab=100.00  E-value=6.9e-47  Score=318.14  Aligned_cols=158  Identities=39%  Similarity=0.682  Sum_probs=145.9

Q ss_pred             ccccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCccccc
Q 026524           68 AKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIY  147 (237)
Q Consensus        68 ~~~~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~  147 (237)
                      +..+.+|+|+     |+.|+|+||||++.||+||+||++||+  .|+ |+|+.||||+|+|||||||+. +++.|+.++|
T Consensus        21 ~~~~~~V~l~-----T~~G~I~ieL~~~~aP~tv~NF~~L~~--~g~-Y~g~~FhRvi~~f~iQgGd~~-~~g~gg~si~   91 (185)
T 2hq6_A           21 PPTNGKVLLK-----TTAGDIDIELWSKEAPKACRNFIQLCL--EAY-YDNTIFHRVVPGFIVQGGDPT-GTGSGGESIY   91 (185)
T ss_dssp             CCCBCEEEEE-----ETTEEEEEEEBTTTCHHHHHHHHHHHH--TTT-TTTEECCEEETTTEEEECCTT-SSSSCCCCTT
T ss_pred             CCCCCEEEEE-----eCCccEEEEEeCCCCcHHHHHHHHHhh--cCc-cCCCEEEEEECCCEEEcCCCC-CCCCCCCccc
Confidence            3346788887     478999999999999999999999995  788 999999999999999999996 7889999999


Q ss_pred             CCCCCCCcc-cccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHH--HHHhhcCCCCCCCCCCCC
Q 026524          148 GSSFEDESF-VLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDV--VRKLESVETSRTDYPKVP  224 (237)
Q Consensus       148 g~~~~de~~-~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dv--l~~I~~~~t~~~~~P~~~  224 (237)
                      |.+|++|.. .++|+++|+|||||.++++++|||||++.++++||++|+|||+|+ ||++  +++|++++++.+++|.++
T Consensus        92 g~~~~dE~~~~l~h~~~G~lsMA~~g~~s~gSQFFIt~~~~~~LDg~~tVFG~V~-G~~v~~~~~i~~~~~~~~~~P~~~  170 (185)
T 2hq6_A           92 GAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNMLRLSEVDIDDDERPHNP  170 (185)
T ss_dssp             SSCBCCCCBTTBCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHTTCSCBCTTSCBSSC
T ss_pred             CCccccccccCcccCCCeEEEEccCCCCCccceEEEECCCCCccCCCceEEEEEE-eCeeehhhHHhhCCcCCCCCCCCC
Confidence            999999986 688999999999999999999999999999999999999999999 8877  478999999999999999


Q ss_pred             eEEEeeEEeeC
Q 026524          225 CRIINSGELPL  235 (237)
Q Consensus       225 v~I~~cG~l~~  235 (237)
                      |+|.+|+++.+
T Consensus       171 v~I~~~~v~~~  181 (185)
T 2hq6_A          171 HKIKSCEVLFN  181 (185)
T ss_dssp             CEEEEEEEEEC
T ss_pred             eEEEEEEEeCC
Confidence            99999999863

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A

Probab=100.00  E-value=2.3e-46  Score=310.11  Aligned_cols=153  Identities=33%  Similarity=0.540  Sum_probs=137.0

Q ss_pred             cceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCC
Q 026524           71 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSS  150 (237)
Q Consensus        71 ~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~  150 (237)
                      +++|+|+     |+.|+|+||||++.||+||+||++||+  +|+ |+|+.||||+|+|||||||++...+   ...++.+
T Consensus         4 ~~~v~~~-----t~~G~i~ieL~~~~aP~t~~NF~~L~~--~g~-Y~g~~FhRvi~~f~iQgGd~~~~~~---~~~~g~~   72 (166)
T 1v9t_A            4 DPHVLLT-----TSAGNIELELDKQKAPVSVQNFVDYVN--SGF-YNNTTFHRVIPGFMIQGGGFTEQMQ---QKKPNPP   72 (166)
T ss_dssp             SCEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHH--TTT-TTTCBEEEEETTTEEEESSBCTTCC---BCCCCCC
T ss_pred             CeEEEEE-----eCCccEEEEEcCCCCcHHHHHHHHHhc--cCC-CCCCEEEEEECCcEEEcCCcCcCCC---CCCCCCc
Confidence            5678887     689999999999999999999999994  788 9999999999999999999875432   2345788


Q ss_pred             CCCCcccccCCCCeEEEEeeC-CCCCCCceeEEEecCCCCCCCC-----CeEEEEEEcCHHHHHHhhcCCCCC----CCC
Q 026524          151 FEDESFVLKHVGPGVLSMANA-GPNTNGSQFFICTVKTPWLDNR-----HVVFGHVIDGMDVVRKLESVETSR----TDY  220 (237)
Q Consensus       151 ~~de~~~~~h~~~G~lsma~~-g~~s~gSqFfItl~~~~~ld~~-----~~vFG~VieG~dvl~~I~~~~t~~----~~~  220 (237)
                      |++|.....|+.+|+|||||. +|+++||||||++.+++|||++     |+|||+|++|||||++|++++++.    +++
T Consensus        73 ~~dE~~~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~~~~  152 (166)
T 1v9t_A           73 IKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNV  152 (166)
T ss_dssp             BCCCGGGSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEEETTEEEE
T ss_pred             ccccccccccCCceEEEEeecCCCCCccceEEEEeCCccccCCccCcCCeeEEEEEecCHHHHHHHHhCCCCCCCccCCC
Confidence            999987655557999999997 6999999999999999999998     999999999999999999999986    479


Q ss_pred             CCCCeEEEeeEEee
Q 026524          221 PKVPCRIINSGELP  234 (237)
Q Consensus       221 P~~~v~I~~cG~l~  234 (237)
                      |.++|+|.+|++++
T Consensus       153 P~~~v~I~~~~v~~  166 (166)
T 1v9t_A          153 PSKPVVILSATVLP  166 (166)
T ss_dssp             ESSCCBEEEEEECC
T ss_pred             cCCCeEEEEEEEeC
Confidence            99999999999874

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A

Probab=100.00  E-value=1.9e-46  Score=310.10  Aligned_cols=145  Identities=37%  Similarity=0.609  Sum_probs=133.0

Q ss_pred             eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCccc-ccCC
Q 026524           83 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFV-LKHV  161 (237)
Q Consensus        83 t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~~-~~h~  161 (237)
                      |+.|+|+||||++.||+||+||++||+  +|+ |+|+.||||+|+|||||||++.+.   +.++++.+|++|+.. ++| 
T Consensus         6 T~~G~i~ieL~~~~aP~t~~NF~~L~~--~g~-Y~g~~FhRvi~~f~iQgGd~~~~~---g~~~~g~~~~dE~~~~l~~-   78 (164)
T 1lop_A            6 TNHGDIVIKTFDDKAPETVKNFLDYCR--EGF-YNNTIFHRVINGFMIQGGGFEPGM---KQKATKEPIKNEANNGLKN-   78 (164)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHH--TTT-TTTEECCEEETTTEEEESSEETTT---EECCCCCCBCCCCCSSCCC-
T ss_pred             eCCCCEEEEEeCCCCcHHHHHHHHHHh--cCC-CCCCEEEEEeCCceEecCCcccCC---CcCCCCCcccccccccccc-
Confidence            689999999999999999999999995  788 999999999999999999997543   456789999999874 666 


Q ss_pred             CCeEEEEeeC-CCCCCCceeEEEecCCCCCCCC--------CeEEEEEEcCHHHHHHhhcCCCCC----CCCCCCCeEEE
Q 026524          162 GPGVLSMANA-GPNTNGSQFFICTVKTPWLDNR--------HVVFGHVIDGMDVVRKLESVETSR----TDYPKVPCRII  228 (237)
Q Consensus       162 ~~G~lsma~~-g~~s~gSqFfItl~~~~~ld~~--------~~vFG~VieG~dvl~~I~~~~t~~----~~~P~~~v~I~  228 (237)
                      .+|+|||||. +|++++|||||++.+++|||++        |+|||+|++|||||++|++++++.    +++|.++|+|.
T Consensus        79 ~~G~lsmA~~~~p~s~gSQFfI~~~~~~~Ld~~~~~~~~~~~tvFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~~~v~I~  158 (164)
T 1lop_A           79 TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIE  158 (164)
T ss_dssp             CTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCEEE
T ss_pred             CccEEEEeecCCCCCccceEEEEcCCccccCCccccccCCceEEEEEEecCHHHHHHHHhCCcCCccccCCCcCCCeEEE
Confidence            6999999974 7999999999999999999998        999999999999999999999975    58999999999


Q ss_pred             eeEEee
Q 026524          229 NSGELP  234 (237)
Q Consensus       229 ~cG~l~  234 (237)
                      +|++++
T Consensus       159 ~~~v~~  164 (164)
T 1lop_A          159 SVTVSE  164 (164)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            999974

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=9.9e-46  Score=320.86  Aligned_cols=159  Identities=36%  Similarity=0.604  Sum_probs=144.4

Q ss_pred             cccccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccc
Q 026524           67 QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISI  146 (237)
Q Consensus        67 ~~~~~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~  146 (237)
                      .+..+.+|+|+     |++|+|+||||++.||+||+||++||+  .|| |+|+.||||+|+|||||||+. ++|.|+.++
T Consensus        17 ~p~~~~~V~l~-----T~~G~I~ieL~~d~aP~tv~NF~~L~~--~g~-Ydgt~FhRVi~~FmiQgGdp~-~~G~Gg~si   87 (232)
T 3bkp_A           17 QGSTRGKVVLH-----TSLGDLDVELWARECPLACRNFVQLCL--EGY-YVNTIFHRVVKDFIVQGGDPT-GTGRGGADT   87 (232)
T ss_dssp             CCSCBCEEEEE-----ETTEEEEEEEBTTTCHHHHHHHHHHHH--HTT-TTTCBEEEEETTTEEEECCTT-SSSSCCCCC
T ss_pred             cCCCCCEEEEE-----ECCCcEEEEEcCCCCcHHHHHHHHHhh--cCc-cCCCEEEEEeCCCEEEcCCCC-CCCCCCCcc
Confidence            34446778777     578999999999999999999999995  678 999999999999999999997 789999999


Q ss_pred             c--CCCCCCCcc-cccCCCCeEEEEeeCCC--------------CCCCceeEEEecCCCCCCCCCeEEEEEEcCHHH--H
Q 026524          147 Y--GSSFEDESF-VLKHVGPGVLSMANAGP--------------NTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDV--V  207 (237)
Q Consensus       147 ~--g~~~~de~~-~~~h~~~G~lsma~~g~--------------~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dv--l  207 (237)
                      |  |..|++|.. .++|+.+|+||||+.++              +++||||||++.++++||++|+|||+|+ ||+|  |
T Consensus        88 ~~~g~~f~dE~~~~l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~~p~LDg~~tVFG~Vv-g~~v~~v  166 (232)
T 3bkp_A           88 TFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKVT-GHTLYNL  166 (232)
T ss_dssp             TTTTCCBCCCCCTTCCCCSTTEEEECCCC----------------CBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHH
T ss_pred             ccCCCccCCccccCcCcCCCeEEEEeccCCcccccccccccccCCCcCCEEEEECCCCcccCCCccEEEEEE-eCchHHH
Confidence            9  899999986 78899999999999987              6999999999999999999999999999 7765  8


Q ss_pred             HHhhcCCCCCCCCCCCCeEEEeeEEeeC
Q 026524          208 RKLESVETSRTDYPKVPCRIINSGELPL  235 (237)
Q Consensus       208 ~~I~~~~t~~~~~P~~~v~I~~cG~l~~  235 (237)
                      ++|++++++.+++|.++|+|.+|+++.+
T Consensus       167 ~kI~~~~t~~~~~P~~~i~I~~~~vl~d  194 (232)
T 3bkp_A          167 MKFNDLEVGKEDRPMTPPFIKSVDVLWN  194 (232)
T ss_dssp             HHHTTSCBCGGGCBSSCCBEEEEEEEEC
T ss_pred             HHHHcCCcCCCCCcCCCeEEEEEEEEcC
Confidence            9999999999999999999999999863

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*

Probab=100.00  E-value=2.2e-45  Score=304.43  Aligned_cols=144  Identities=34%  Similarity=0.528  Sum_probs=130.6

Q ss_pred             eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcc-cccCC
Q 026524           83 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLKHV  161 (237)
Q Consensus        83 t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~-~~~h~  161 (237)
                      |+.|+|+||||++.||+||+||++||+  .++ |+|+.||||+|+|||||||++.+.+   ...++.++++|.. .++| 
T Consensus        10 T~~G~i~ieL~~~~aP~t~~NF~~L~~--~g~-Y~g~~FhRvi~~f~iQgGd~~~~~~---~~~~~~~~~~E~~~~l~~-   82 (167)
T 3s6m_A           10 TNHGVIKLELDEAKAPKTVENFLNYVK--KGH-YDGTIFHRVINGFMIQGGGFEPGLK---QKPTDAPIANEANNGLKN-   82 (167)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHH--HTT-TTTEECCEEETTTEEEESSEETTTE---ECCCCCCBCCCGGGCCCC-
T ss_pred             eCCceEEEEEeCCCCcHHHHHHHHHhh--hcc-cCCCEeEEecCCcEEEeccccCCCC---CCCCCCccCCcccccccC-
Confidence            789999999999999999999999995  678 9999999999999999999875432   2445778888875 4555 


Q ss_pred             CCeEEEEee-CCCCCCCceeEEEecCCCCCCCC--------CeEEEEEEcCHHHHHHhhcCCCCC----CCCCCCCeEEE
Q 026524          162 GPGVLSMAN-AGPNTNGSQFFICTVKTPWLDNR--------HVVFGHVIDGMDVVRKLESVETSR----TDYPKVPCRII  228 (237)
Q Consensus       162 ~~G~lsma~-~g~~s~gSqFfItl~~~~~ld~~--------~~vFG~VieG~dvl~~I~~~~t~~----~~~P~~~v~I~  228 (237)
                      .+|+||||| .+|+++||||||++.+++|||++        |+|||+|++|||||++|+++++++    +++|.++|+|.
T Consensus        83 ~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~~~~~VFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~~~v~I~  162 (167)
T 3s6m_A           83 DTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVIE  162 (167)
T ss_dssp             CTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTCCCCEEEEEEECHHHHHHHTTSCBBC---CBTCBSSCCEEE
T ss_pred             CccEEEEecCCCCCCccceEEEEcCCchhcCCcccccCCCCceEEEEEEcCHHHHHHHHcCCcCCCcccCCCcCCCeEEE
Confidence            799999999 67999999999999999999998        999999999999999999999987    68999999999


Q ss_pred             eeEEe
Q 026524          229 NSGEL  233 (237)
Q Consensus       229 ~cG~l  233 (237)
                      +|.+|
T Consensus       163 ~~~il  167 (167)
T 3s6m_A          163 KAVVV  167 (167)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99886

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}

Probab=100.00  E-value=1.7e-38  Score=290.71  Aligned_cols=140  Identities=28%  Similarity=0.416  Sum_probs=120.5

Q ss_pred             cccceEEEEEEEC--C---eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCC-
Q 026524           69 KVTTKVFFDVDIG--G---KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTG-  142 (237)
Q Consensus        69 ~~~~~v~~di~~~--~---t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~g-  142 (237)
                      .++.++++.+.+.  +   ++.|+|+||||++.||+||+||++||+  +|| |+|+.|||| ++|||||||++ +++.| 
T Consensus       166 ~l~gra~V~m~t~~~~~~~~~~G~I~IeL~~d~AP~Tv~NFl~L~~--~Gf-YdGt~FHRV-~gFmIQgGDp~-g~G~G~  240 (369)
T 3rfy_A          166 LLKGRASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVE--RHF-YDGMEIQRS-DGFVVQTGDPE-GPAEGF  240 (369)
T ss_dssp             EECSEEEEEEEEECCSCSSCSEEEEEEEEETTTCHHHHHHHHHHHH--TTT-TTTEECEEE-EEEEECCCCCC-CCCSCC
T ss_pred             cCCCCeEEEEEEeccCCCcccceEEEEEEeCCCCcHHHHHHHHHhh--cCC-cCCCeeeee-CCeeEecCCCC-CCCCCc
Confidence            3344555555543  2   369999999999999999999999995  888 999999999 99999999997 55555 


Q ss_pred             --------------------cccccCCCCCCCcc-----cccCCCCeEEEEeeC--CCCCCCceeEEEe-------cCCC
Q 026524          143 --------------------GISIYGSSFEDESF-----VLKHVGPGVLSMANA--GPNTNGSQFFICT-------VKTP  188 (237)
Q Consensus       143 --------------------g~s~~g~~~~de~~-----~~~h~~~G~lsma~~--g~~s~gSqFfItl-------~~~~  188 (237)
                                          +.++|+..|++|++     .++|+.+|+|||||.  +||++||||||++       .+.+
T Consensus       241 ~~~~~g~~~~iP~E~~~~G~g~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~gPnSngSQFFItl~d~~L~~~~~~  320 (369)
T 3rfy_A          241 IDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTPSNSN  320 (369)
T ss_dssp             CSCCCCCCCSSSSSSCSSSSCCSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCCCSSCCCCCCCEEEEECSCCCS
T ss_pred             cCcccCcCcccCccccccCCCCCcCCCccccccccccccccccCCCceEEEeecCCCCCCccceEEEEecccccCCCCCc
Confidence                                45778888888864     688889999999997  8999999999999       4689


Q ss_pred             CCCCCCeEEEEEEcCHHHHHHhhcC
Q 026524          189 WLDNRHVVFGHVIDGMDVVRKLESV  213 (237)
Q Consensus       189 ~ld~~~~vFG~VieG~dvl~~I~~~  213 (237)
                      |||++|+|||+|++|||||++|++.
T Consensus       321 ~LDgkytVFG~VveGmdVVdkI~~G  345 (369)
T 3rfy_A          321 ILDGRYAVFGYVTDNEDFLADLKVG  345 (369)
T ss_dssp             SSCSCEEEEEEEEESTTGGGGCCTT
T ss_pred             ccCCCeeEEEEEecCHHHHHHHhCC
Confidence            9999999999999999999999874

>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP}

Probab=95.42  E-value=0.12  Score=42.59  Aligned_cols=115  Identities=15%  Similarity=0.204  Sum_probs=64.2

Q ss_pred             EEEEEECCeecee-EEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcC--cEEEeCCCCCCCCCCcccccCCCC
Q 026524           75 FFDVDIGGKPAGR-IVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKD--FMIQGGDFTEGDGTGGISIYGSSF  151 (237)
Q Consensus        75 ~~di~~~~t~~G~-ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~--~~iqgGd~~~~~g~gg~s~~g~~~  151 (237)
                      |+.|++.  ..|- ++.+|..+.||+||+.|+++.   -   |.+..+|-..-+  .|+--+++..           ...
T Consensus        23 ~i~itl~--~~g~~~~A~Lldd~APkTcaA~~~~L---P---~~~~viHarwSGeeVy~~lp~f~~-----------~~~   83 (188)
T 3kop_A           23 YINITLE--KRGVTCKALLLDDVAPRTSKAVWDAL---P---QSSQVFHGKYARNEIYNLVPAFAP-----------KEP   83 (188)
T ss_dssp             EEEEEET--TTTEEEEEEECTTTSHHHHHHHHHHC---C---EEEECEECSSSSSEEEEEEECCSS-----------SCC
T ss_pred             EEEEEEe--cCCeEEEEEEccccChHHHHHHHHhC---C---CCcceEEEEEecceEEEECCcccc-----------cCC
Confidence            6677774  3443 899999999999999999976   2   444444433332  3333333220           112


Q ss_pred             CCCcccccCCCCeEEEEeeC-----C-------C------CCCCceeEEEecCC--------CCCCCCCeEEEEEEcCHH
Q 026524          152 EDESFVLKHVGPGVLSMANA-----G-------P------NTNGSQFFICTVKT--------PWLDNRHVVFGHVIDGMD  205 (237)
Q Consensus       152 ~de~~~~~h~~~G~lsma~~-----g-------~------~s~gSqFfItl~~~--------~~ld~~~~vFG~VieG~d  205 (237)
                      ..||... +..+|-|++=..     |       .      .....++.|-.+.+        .|+-+  .+|++|+||+|
T Consensus        84 g~EN~T~-~P~pGDIl~f~f~p~~lG~~~yGy~~~~~~~~~~~~~dl~ifYG~~~~l~~~~~GwlpG--N~F~TIveGle  160 (188)
T 3kop_A           84 GAENTTV-TPIPGDVCYFTFTSNDLKTPSHGYEADSGTDEVQTIVDLAVFYGRNNLLLNGDTGWVPG--NVFATIVEGLD  160 (188)
T ss_dssp             CSCSEES-SCCTTEEEEEEEEHHHHSSGGGCC--------CCEEEEEEEECSSSCCCEETTTEECCE--EEEEEEEESHH
T ss_pred             CcCCCCC-CCCCCcEEEEecCCcccCCccccccccccccCCCcceEEEEEecccccccccccceecC--cEEEEEecCHH
Confidence            3344432 334676665210     1       0      01113444444433        34544  79999999999


Q ss_pred             HHHHhh
Q 026524          206 VVRKLE  211 (237)
Q Consensus       206 vl~~I~  211 (237)
                      -|.++-
T Consensus       161 ~la~~c  166 (188)
T 3kop_A          161 EMAAAC  166 (188)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            876553

>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}

Probab=91.42  E-value=0.31  Score=38.94  Aligned_cols=105  Identities=18%  Similarity=0.190  Sum_probs=59.7

Q ss_pred             EEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcc
Q 026524           77 DVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF  156 (237)
Q Consensus        77 di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~  156 (237)
                      .|.+++   ..++++|+.+.||+||+.|+++.   -   +... +.+. .+ -+-+ +....          -..+ |+.
T Consensus        33 ~i~~~~---~~~~a~L~D~~aP~Ta~~f~~~L---P---l~~~-~~~~-g~-E~y~-~lp~~----------l~~~-en~   88 (153)
T 2nnz_A           33 RIRFES---AECEVELYEEWAPETVRAIADAL---P---IKST-ANRW-GD-EIYF-TTQVA----------VEKE-ENS   88 (153)
T ss_dssp             EEEETT---EEEEECCCTTSCHHHHHHHHHTC---S---EEEE-EEEE-TT-EEEE-CCSCC----------CCCS-SCC
T ss_pred             EEEECC---EEEEEEEcCCCCHHHHHHHHHhC---C---cEEE-HHhh-CC-cEEE-ECCCC----------CCCC-CCC
Confidence            345555   66999999999999999999986   1   2221 2221 11 1111 11100          0111 222


Q ss_pred             cccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCC------CCeEEEEEEcCHHHHHHhh
Q 026524          157 VLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDN------RHVVFGHVIDGMDVVRKLE  211 (237)
Q Consensus       157 ~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~------~~~vFG~VieG~dvl~~I~  211 (237)
                       ......|-|+.-..+.     .+-|-.++.|...+      .-.+||+|++|++.|.++.
T Consensus        89 -~~~~~~GDI~Yy~pg~-----~LaIFYg~~p~s~~e~~~as~~~~lG~I~~gle~L~~~~  143 (153)
T 2nnz_A           89 -KDVVELGDVAYWIPGK-----AICLFFGKTPISDDKIRPASAVNVIGRIVNSMEGLKGVA  143 (153)
T ss_dssp             -BCCCCTTEEEEETTTT-----EEEEESSCCTTCTTSCCCCSSEEEEEECCSCCCCGGGCC
T ss_pred             -cccCCCCeEEEeCCCC-----EEEEEECCccccccccccccccEEEEEEccCHHHHhhCC
Confidence             2234578888755433     26666666643222      2488999999987776653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	237
d2cfea1	162	b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s	4e-63
d1a33a_	174	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (	1e-62
d2rmca_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus	3e-62
d1h0pa_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd	4e-61
d1qnga_	170	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium	1e-58
d2z6wa1	164	b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c	1e-57
d1xo7a_	166	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom	2e-57
d2igva1	172	b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno	6e-57
d1ihga2	195	b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain	3e-55
d1qoia_	173	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom	1e-54
d2c3ba1	171	b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper	5e-54
d2r99a1	161	b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl	3e-53
d1z81a1	186	b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas	6e-50
d1zkca1	178	b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso	4e-49
d1xwna1	166	b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome	6e-48
d1w74a_	171	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	2e-40
d2ok3a1	159	b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B	4e-40
d2a2na1	164	b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma	3e-37
d2b71a1	169	b.62.1.1 (A:23-191) Cyclophilin-like protein PY006	5e-37
d2fu0a1	155	b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {	7e-36
d1lopa_	164	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	2e-30
d1v9ta_	166	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	2e-30

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

 Score =  192 bits (488), Expect = 4e-63
 Identities = 101/160 (63%), Positives = 118/160 (73%), Gaps = 1/160 (0%)

Query: 72  TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQ 131
           + VFFD+   G P G I   LF DVVPKTA NFRALCTGEKG+GY G  FHR+I DFM+Q
Sbjct: 2   SNVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQ 61

Query: 132 GGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLD 191
           GGDFT G+GTGG SIYG+ F DE+F LKH  PG+LSMANAGPNTNGSQFFI TV T WLD
Sbjct: 62  GGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLD 121

Query: 192 NRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSG 231
            +HVVFG VIDGM+VV+ +E+  +  +  P+    I   G
Sbjct: 122 GKHVVFGEVIDGMNVVKAIEAEGS-GSGKPRSRIEIAKCG 160

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

 Score =  191 bits (486), Expect = 1e-62
 Identities = 98/173 (56%), Positives = 118/173 (68%), Gaps = 8/173 (4%)

Query: 69  KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG--------YKGCS 120
           K   +VF DV I G  AGRIVM L+ D+ P+T  NF  LCTG  G G        YKG +
Sbjct: 1   KDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGST 60

Query: 121 FHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQF 180
           FHR+IK+FMIQGGDFT+GDGTGG SIYG  F+DE FV+KH  P V+SMAN GPNTNGSQF
Sbjct: 61  FHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQF 120

Query: 181 FICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           FI T   P L+N HVVFG V+ G +VV K+E ++T+  + P     I+N GEL
Sbjct: 121 FITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 173

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

 Score =  190 bits (484), Expect = 3e-62
 Identities = 111/168 (66%), Positives = 126/168 (75%)

Query: 69  KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDF 128
            VT KVFFDV IG K  GRIV+GLFG+VVPKT ENF AL TGEKGYGYKG  FHR+IKDF
Sbjct: 5   SVTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDF 64

Query: 129 MIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 188
           MIQGGDFT  DGTGG+SIYG +F DE+F LKH G G +SMANAGP+TNGSQFFI   K  
Sbjct: 65  MIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPT 124

Query: 189 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 236
           WLD +HVVFG V+DGM VV  +E   T   D P   C I+NSG++ + 
Sbjct: 125 WLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKIDVK 172

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

 Score =  188 bits (477), Expect = 4e-61
 Identities = 110/168 (65%), Positives = 124/168 (73%)

Query: 69  KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDF 128
           KVT +V+FD++IGGKP GRIV+GLFG  VPKTA NF  L    KG GY G  FHR+I DF
Sbjct: 4   KVTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADF 63

Query: 129 MIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 188
           MIQGGDFT GDGTGG SIYG  F DE+F LKH G G LSMANAG +TNGSQFFI TVKTP
Sbjct: 64  MIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTP 123

Query: 189 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 236
           WLD RHVVFG +++GMDVVRK+E  E    D PK    I  SG + +D
Sbjct: 124 WLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIAVD 171

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

 Score =  181 bits (459), Expect = 1e-58
 Identities = 97/168 (57%), Positives = 115/168 (68%), Gaps = 7/168 (4%)

Query: 72  TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGE------KGYGYKGCSFHRII 125
           +KVFFD+ I    AGRI+  LF D+ P+T ENFRALCTGE      K   YK   FHRII
Sbjct: 4   SKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRII 63

Query: 126 KDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTV 185
             FM QGGD T G+G+GG SIYG SF DE+F +KH  PG+LSMANAGPNTN SQFFI  V
Sbjct: 64  PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLV 123

Query: 186 KTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
             PWLD +HVVFG VI+GM+VVR++E     ++ Y K    I + GEL
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYVKRSVVITDCGEL 170

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  178 bits (452), Expect = 1e-57
 Identities = 109/161 (67%), Positives = 127/161 (78%), Gaps = 1/161 (0%)

Query: 73  KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQG 132
            V+ DVD  GKP GR+V+ L  DVVPKTAENFRALCTGEKG+GYKG +FHR+I  FM Q 
Sbjct: 4   LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQA 63

Query: 133 GDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDN 192
           GDFT  +GTGG SIYGS F DE+F LKHVGPGVLSMANAGPNTNGSQFFICT+KT WLD 
Sbjct: 64  GDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 123

Query: 193 RHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           +HVVFGHVI+GMDVV+K+ES  + ++        I + G+L
Sbjct: 124 KHVVFGHVIEGMDVVKKIESFGS-KSGRTSKKIVITDCGQL 163

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  178 bits (451), Expect = 2e-57
 Identities = 100/165 (60%), Positives = 127/165 (76%), Gaps = 1/165 (0%)

Query: 69  KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDF 128
            VT KV+FD+ IG +P GR+V+GLFG+ VPKT ENF+ L +GE G+GYKG  FHR+I++F
Sbjct: 3   VVTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNF 62

Query: 129 MIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 188
           MIQGGDFT  DGTGG SIYG+ F+DE+  +KH   G +SMANAGPN+NGSQFF+ T  TP
Sbjct: 63  MIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFVTTAPTP 121

Query: 189 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           WLD RHVVFG V++GMDVV+K+E+ +T   D PK   +I + G L
Sbjct: 122 WLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

 Score =  176 bits (448), Expect = 6e-57
 Identities = 108/171 (63%), Positives = 128/171 (74%), Gaps = 8/171 (4%)

Query: 70  VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGE-------KGYGYKGCSFH 122
             +KVFFD+ IGGK +GRIVM L+ DVVPKTA NFRALCTGE       K   +KG  FH
Sbjct: 2   SRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFH 61

Query: 123 RIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFI 182
           RII +FMIQGGDFT G+GTGG SIYG  F DE+F  KH GPGVLSMANAGPNTNGSQFF+
Sbjct: 62  RIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFL 121

Query: 183 CTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
           CTVKT WLD +HVVFG V++G+DVV+ +ES  + ++  P   C I + G+L
Sbjct: 122 CTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGS-QSGKPVKDCMIADCGQL 171

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  173 bits (439), Expect = 3e-55
 Identities = 107/170 (62%), Positives = 121/170 (71%), Gaps = 9/170 (5%)

Query: 73  KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGE--------KGYGYKGCSFHRI 124
           +VFFDVDIGG+  GRIV+ LF D+VPKTAENFRALCTGE        K   +KGC FHRI
Sbjct: 16  RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRI 75

Query: 125 IKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICT 184
           IK FMIQGGDF+  +GTGG SIYG  FEDE+F  KH   G+LSMANAG NTNGSQFFI T
Sbjct: 76  IKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITT 135

Query: 185 VKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELP 234
           V TP LD +HVVFG VI GM V + LE+VE  + + P   C I   GEL 
Sbjct: 136 VPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECGELK 184

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

 Score =  171 bits (433), Expect = 1e-54
 Identities = 100/171 (58%), Positives = 120/171 (70%), Gaps = 5/171 (2%)

Query: 68  AKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGE-----KGYGYKGCSFH 122
           + V   VFFDV IGG+  GR+ + LF DVVPKTAENFR  CTGE        GYKG +FH
Sbjct: 3   SPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFH 62

Query: 123 RIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFI 182
           R+IKDFMIQGGDF  GDGTG  SIY   F DE+F L+H  PG+LSMAN+GP+TNG QFFI
Sbjct: 63  RVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFI 122

Query: 183 CTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
              K  WLD +HVVFG +IDG+ V+RK+E+V T   + PK+P  I   GE+
Sbjct: 123 TCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 173

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

 Score =  169 bits (429), Expect = 5e-54
 Identities = 92/170 (54%), Positives = 112/170 (65%), Gaps = 8/170 (4%)

Query: 72  TKVFFDVD-----IGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIK 126
           ++VFFDV+           GRIV  LF   VPKTA+NFR LC    G GY+  +FHRII 
Sbjct: 2   SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIP 61

Query: 127 DFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVK 186
           +FMIQGGDFT G+GTGG SIYG  F DE+F  KH   G+LSMANAGPNTNGSQFFI T  
Sbjct: 62  NFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAV 121

Query: 187 TPWLDNRHVVFGHVID--GMDVVRKLESVET-SRTDYPKVPCRIINSGEL 233
           T WLD +HVVFG V D     VV+++E++ + S +       +I+N GEL
Sbjct: 122 TSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 171

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  167 bits (423), Expect = 3e-53
 Identities = 100/160 (62%), Positives = 121/160 (75%), Gaps = 1/160 (0%)

Query: 73  KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQG 132
           +V+ D+ IG KPAGRI M L  DVVP TAENFR LCT EKG+G+KG SFHRII  FM QG
Sbjct: 3   QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQG 62

Query: 133 GDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDN 192
           GDFT  +GTGG SIYG  F+DE+F+LKH GPG+LSMAN+GPNTNGSQFF+   KT WLD 
Sbjct: 63  GDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDG 122

Query: 193 RHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGE 232
           +HVVFG V +G+DV+R++E+   S+   PK    I + GE
Sbjct: 123 KHVVFGEVTEGLDVLRQIEAQ-GSKDGKPKQKVIIADCGE 161

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

 Score =  159 bits (403), Expect = 6e-50
 Identities = 82/169 (48%), Positives = 111/169 (65%), Gaps = 8/169 (4%)

Query: 73  KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-----YKGCSFHRIIKD 127
            VF D+++G    G+    LF ++VPKT+ENFR  CTGE         YK   FHR+IK+
Sbjct: 18  VVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKE 77

Query: 128 FMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKT 187
           FMIQGGDF   +G+G +SIYG  F+DE+F +KH   G+LSMAN+GPNTNG QFFI T K 
Sbjct: 78  FMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKC 137

Query: 188 PWLDNRHVVFGHVIDG--MDVVRKLESVET-SRTDYPKVPCRIINSGEL 233
            WLD ++VVFG +ID   + +++K+E+V        PK+P  ++  GEL
Sbjct: 138 EWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 186

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  157 bits (397), Expect = 4e-49
 Identities = 71/146 (48%), Positives = 92/146 (63%), Gaps = 6/146 (4%)

Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS 145
           G + + L  D+ PKT ENF  LC   K + Y G  FHR I++F+IQGGD T G GTGG S
Sbjct: 10  GDLNLELHCDLTPKTCENFIRLC---KKHYYDGTIFHRSIRNFVIQGGDPT-GTGTGGES 65

Query: 146 IYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 204
            +G  F+DE    L H G G+LSMAN+GPN+N SQFFI      +LD +H +FG V+ G 
Sbjct: 66  YWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGF 125

Query: 205 DVVRKLESVET-SRTDYPKVPCRIIN 229
           DV+  +E+VE+  +TD PK   RI  
Sbjct: 126 DVLTAMENVESDPKTDRPKEEIRIDA 151

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  153 bits (388), Expect = 6e-48
 Identities = 75/159 (47%), Positives = 95/159 (59%), Gaps = 10/159 (6%)

Query: 73  KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQG 132
            V+ +  +G      IV+ L+    PKT +NF  L    +   Y G  FHRIIKDFMIQG
Sbjct: 13  NVYLETSMG-----IIVLELYWKHAPKTCKNFAELA---RRGYYNGTKFHRIIKDFMIQG 64

Query: 133 GDFTEGDGTGGISIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLD 191
           GD T G G GG SIYG  FEDE    LK  G G+L+MANAGP+TNGSQFF+    T WLD
Sbjct: 65  GDPT-GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLD 123

Query: 192 NRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINS 230
            +H +FG V  G+ +V ++  VET+  D P    +II +
Sbjct: 124 GKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKA 162

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  134 bits (339), Expect = 2e-40
 Identities = 67/158 (42%), Positives = 80/158 (50%), Gaps = 17/158 (10%)

Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYG------------YKGCSFHRIIKDFMIQGG 133
           G I + LFG+  PKT  NF  L  G K Y             Y G  FHR+I+ FMIQGG
Sbjct: 13  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 72

Query: 134 DFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNR 193
           D T G G GG        ++    L+   P +L+MANAGP TNGSQFFI   KTP L+ R
Sbjct: 73  DPT-GTGRGGPGYK--FADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRR 129

Query: 194 HVVFGHVID--GMDVVRKLESVETSRTDYPKVPCRIIN 229
           H +FG VID     VV  +    T   D P  P  I +
Sbjct: 130 HTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIES 167

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (336), Expect = 4e-40
 Identities = 64/145 (44%), Positives = 80/145 (55%), Gaps = 4/145 (2%)

Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS 145
           G I + +F +  PKT ENF ALC       Y GC FHR IK FM+Q GD T     G   
Sbjct: 10  GDIKIEVFCERTPKTCENFLALC---ASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSI 66

Query: 146 IYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMD 205
                 ++ S  LKH   GV+SMAN GPNTNGSQFFI   K P LD ++ VFG VIDG++
Sbjct: 67  WGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLE 126

Query: 206 VVRKLESVET-SRTDYPKVPCRIIN 229
            + +LE +    +T  P     I +
Sbjct: 127 TLDELEKLPVNEKTYRPLNDVHIKD 151

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (316), Expect = 3e-37
 Identities = 73/158 (46%), Positives = 86/158 (54%), Gaps = 4/158 (2%)

Query: 73  KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQG 132
           K   D  I     G I   LF    PKT ENF   C   +   Y G +FHRIIK FMIQ 
Sbjct: 6   KRVSDSAIIHTSMGDIHTKLFPVECPKTVENF---CVHSRNGYYNGHTFHRIIKGFMIQT 62

Query: 133 GDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDN 192
           GD T     G     G   ++    L+H  P  LSMANAG NTNGSQFFI  V TPWLDN
Sbjct: 63  GDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDN 122

Query: 193 RHVVFGHVIDGMDVVRKLESVET-SRTDYPKVPCRIIN 229
           +H VFG V  GM+VV+++ +V+   +TD P     IIN
Sbjct: 123 KHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN 160

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

 Score =  126 bits (316), Expect = 5e-37
 Identities = 54/146 (36%), Positives = 75/146 (51%), Gaps = 3/146 (2%)

Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS 145
           G   + L+    PKT  NF  LC   +   Y    FHR+I +F+IQGGD T     G   
Sbjct: 26  GDFEVELYWYHSPKTCLNFYTLC---EMGFYDNTIFHRVIPNFVIQGGDPTGTGKGGKSI 82

Query: 146 IYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMD 205
                 ++ +  LKH G G+LSM+N GPNTN SQFFI     P LD +H +F  V   M 
Sbjct: 83  YGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMT 142

Query: 206 VVRKLESVETSRTDYPKVPCRIINSG 231
            +  + SV+T+ T+ P    +I+ + 
Sbjct: 143 CIENIASVQTTATNKPIFDLKILRTS 168

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

 Score =  122 bits (306), Expect = 7e-36
 Identities = 72/145 (49%), Positives = 87/145 (60%), Gaps = 5/145 (3%)

Query: 86  GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS 145
           G I + LF     KT +NF           Y  C FHR+IK FM+Q GD + GDGTGG S
Sbjct: 11  GDIHISLFYKECKKTVQNFSVHSINGY---YNNCIFHRVIKHFMVQTGDPS-GDGTGGES 66

Query: 146 IYGSSFEDESF-VLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 204
           I+G+ FEDE F  L H  P ++SMAN GPNTNGSQFFI TV  PWLD +H VFG V  G 
Sbjct: 67  IWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGS 126

Query: 205 DVVRKLESVETSRTDYPKVPCRIIN 229
            +V  +E V T + D P    +I+N
Sbjct: 127 KIVLDIEKVRTDKRDKPLEDIKILN 151

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score =  108 bits (271), Expect = 2e-30
 Identities = 48/158 (30%), Positives = 66/158 (41%), Gaps = 19/158 (12%)

Query: 85  AGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI 144
            G IV+  F D  P+T +NF   C   +   Y    FHR+I  FMIQGG F  G      
Sbjct: 8   HGDIVIKTFDDKAPETVKNFLDYC---REGFYNNTIFHRVINGFMIQGGGFEPGMKQK-- 62

Query: 145 SIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVK--------TPWLDNRHV 195
                  ++E +  LK+    +       P++  +QFFI  V                + 
Sbjct: 63  -ATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYC 121

Query: 196 VFGHVIDGMDVVRKLESVETSR----TDYPKVPCRIIN 229
           VF  V+DGMD V K++ V T R     D PK    I +
Sbjct: 122 VFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIES 159

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score =  108 bits (271), Expect = 2e-30
 Identities = 50/176 (28%), Positives = 71/176 (40%), Gaps = 19/176 (10%)

Query: 68  AKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKD 127
           AK    V          AG I + L     P + +NF           Y   +FHR+I  
Sbjct: 1   AKGDPHVLLTTS-----AGNIELELDKQKAPVSVQNFVDYVNSGF---YNNTTFHRVIPG 52

Query: 128 FMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKT 187
           FMIQGG FTE       +    +  D    L++    +     A  ++  SQFFI     
Sbjct: 53  FMIQGGGFTEQMQQKKPNPPIKNEADNG--LRNTRGTIAMARTADKDSATSQFFINVADN 110

Query: 188 PWLDNR-----HVVFGHVIDGMDVVRKLESVET----SRTDYPKVPCRIINSGELP 234
            +LD+      + VFG V+ GMDV  K+  V T       + P  P  I+++  LP
Sbjct: 111 AFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVLP 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	237
d2rmca_	182	Cyclophilin (eukaryotic) {Mouse (Mus musculus), va	100.0
d1xo7a_	166	Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId	100.0
d1h0pa_	182	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d2igva1	172	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d2z6wa1	164	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d2r99a1	161	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d1qnga_	170	Cyclophilin (eukaryotic) {Plasmodium falciparum [T	100.0
d1a33a_	174	Cyclophilin (eukaryotic) {Nematode (Brugia malayi)	100.0
d2cfea1	162	Cyclophilin-like allergen Mal s 6 {Malassezia symp	100.0
d1qoia_	173	Cyclophilin (eukaryotic) {Human (Homo sapiens), U4	100.0
d1ihga2	195	Cyclophilin 40 isomerase domain {Cow (Bos taurus)	100.0
d1z81a1	186	Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId	100.0
d2c3ba1	171	Cyclophilin (eukaryotic) {Aspergillus fumigatus [T	100.0
d2ok3a1	159	Cyclophilin-like protein PPIL3B {Human (Homo sapie	100.0
d2fu0a1	155	Putative cyclophilin PFE0505w {Plasmodium falcipar	100.0
d1xwna1	166	Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1	100.0
d1zkca1	178	Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop	100.0
d2b71a1	169	Cyclophilin-like protein PY00693 {Plasmodium yoeli	100.0
d1v9ta_	166	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0
d2a2na1	164	Peptidylprolyl isomerase domain and WD repeat-cont	100.0
d1w74a_	171	Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob	100.0
d1lopa_	164	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

Probab=100.00  E-value=2.2e-49  Score=330.10  Aligned_cols=169  Identities=66%  Similarity=1.100  Sum_probs=161.1

Q ss_pred             cccccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccc
Q 026524           67 QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISI  146 (237)
Q Consensus        67 ~~~~~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~  146 (237)
                      .++++++|||||+++++++|+|+||||.+.||++|+||++||+++++.+|+|+.|||+++++++|+|++...++.++...
T Consensus         3 ~p~~t~~vy~di~i~~~~~G~ivieL~~d~aP~tv~nF~~l~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~   82 (182)
T d2rmca_           3 GPSVTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGMSI   82 (182)
T ss_dssp             SCEEEEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCCSSSSSSCCCBT
T ss_pred             CCccCCeEEEEEEECCEECcEEEEEEcCCCCcHHHHHHHHhhhcCCCccccCceeeeeecCceEEcCCCCCCCCCCCCCC
Confidence            46789999999999999999999999999999999999999987666559999999999999999999988888888999


Q ss_pred             cCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeE
Q 026524          147 YGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCR  226 (237)
Q Consensus       147 ~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~  226 (237)
                      ++..+++++....|..+|+|+|++.++++++|||||++.++++||++|+|||+|++|||||++|++++++.+++|.++|+
T Consensus        83 ~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~~~~~~P~~~v~  162 (182)
T d2rmca_          83 YGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCT  162 (182)
T ss_dssp             TBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEE
T ss_pred             cCCcccccccccccCCCccEehhhcCCCccCccccccccCCchhcccceEEEEEechHHHHHHHHhCCcCCCCcCCCCeE
Confidence            99999999998889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeEEeeC
Q 026524          227 IINSGELPL  235 (237)
Q Consensus       227 I~~cG~l~~  235 (237)
                      |.+||+|+.
T Consensus       163 I~~~g~l~~  171 (182)
T d2rmca_         163 IVNSGKIDV  171 (182)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEeeEEeC
Confidence            999999974

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=2.6e-49  Score=324.89  Aligned_cols=165  Identities=61%  Similarity=1.082  Sum_probs=154.3

Q ss_pred             ccccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCccccc
Q 026524           68 AKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIY  147 (237)
Q Consensus        68 ~~~~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~  147 (237)
                      ++++++|||||+++++++|+|+||||.+.||++|+||++||+++.+.+|+|+.|||+++++++|+|++...++.++...+
T Consensus         2 p~~t~~V~~di~i~~~~~G~i~ieL~~~~aP~t~~nF~~l~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~   81 (166)
T d1xo7a_           2 PVVTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGKSIY   81 (166)
T ss_dssp             CCCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTT
T ss_pred             CCCCCeEEEEEEECCEECcEEEEEECCCCChHHHHHHHHhhcccccccccCcEEEEEcCCCEEEeCCCCCCCCCCCCCCC
Confidence            56799999999999999999999999999999999999999877776799999999999999999999888888888877


Q ss_pred             CCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEE
Q 026524          148 GSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRI  227 (237)
Q Consensus       148 g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I  227 (237)
                      +..++++.....| .+|+|+|++.++++++|||||+++++++||++|+|||+|++|||+|++|++++++.+++|.++|+|
T Consensus        82 ~~~~~~~~~~~~~-~~G~l~~a~~g~~s~~sqFfIt~~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I  160 (166)
T d1xo7a_          82 GTRFDDENLKIKH-FVGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKI  160 (166)
T ss_dssp             BSCBCCCCCCSCC-CTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEE
T ss_pred             Ccccccccccccc-cccceeecccCCCCCCCeeEEccCCccccCccceeeeEEeeHHHHHHHHHcCCCCCCCCCCCCEEE
Confidence            7777777765544 789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeEEe
Q 026524          228 INSGEL  233 (237)
Q Consensus       228 ~~cG~l  233 (237)
                      .+||+|
T Consensus       161 ~~cgvl  166 (166)
T d1xo7a_         161 NDCGVL  166 (166)
T ss_dssp             EEEEEC
T ss_pred             EeeEeC
Confidence            999997

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

Probab=100.00  E-value=1.3e-49  Score=331.38  Aligned_cols=169  Identities=65%  Similarity=1.089  Sum_probs=160.3

Q ss_pred             ccccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCccccc
Q 026524           68 AKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIY  147 (237)
Q Consensus        68 ~~~~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~  147 (237)
                      ++++++|||||+++++++|+|+||||.+.||+||+||++||++.++..|+++.|||++++|++|+|+...+++.++...+
T Consensus         3 p~~t~~vy~di~i~~~~~G~i~IeL~~d~aP~tv~nF~~l~~~g~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~g~~~~~   82 (182)
T d1h0pa_           3 PKVTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRSIY   82 (182)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECCTTTSSSSCCCBTT
T ss_pred             CCCCCeEEEEEEECCEECeEEEEEECCCCChHHHHHHHHHHHhcccCCcCCceEEEEEecceEEcCCCCCCCCCCCCCCC
Confidence            57899999999999999999999999999999999999999865544499999999999999999999988999999999


Q ss_pred             CCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEE
Q 026524          148 GSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRI  227 (237)
Q Consensus       148 g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I  227 (237)
                      +..+.++.....|..+|+++|++.++++++|||||++.++++||++|+|||+|++|||+|++|++++++++++|.++|+|
T Consensus        83 ~~~~~~~~~~~~~~~~G~~~~a~~g~~s~~sqFfIt~~~~~~ldg~ytvFG~Vi~G~dvl~~I~~~~~~~~~~P~~~v~I  162 (182)
T d1h0pa_          83 GEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVII  162 (182)
T ss_dssp             BSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTTEESSCEEE
T ss_pred             CCccCcccccccccCCceeeecccCCCCcCccccccccccccccccceeEEEEeehHHHHHHHHhcCCCCCCCCCCCEEE
Confidence            99999999888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeEEeeCC
Q 026524          228 INSGELPLD  236 (237)
Q Consensus       228 ~~cG~l~~~  236 (237)
                      .+||+|..+
T Consensus       163 ~~cG~l~~~  171 (182)
T d1h0pa_         163 AASGHIAVD  171 (182)
T ss_dssp             EEEEEEEEE
T ss_pred             EECCeEeCC
Confidence            999999753

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

Probab=100.00  E-value=4e-49  Score=325.63  Aligned_cols=162  Identities=66%  Similarity=1.137  Sum_probs=153.8

Q ss_pred             cceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccC--------CCcccCCCEEEEEEcCcEEEeCCCCCCCCCC
Q 026524           71 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGE--------KGYGYKGCSFHRIIKDFMIQGGDFTEGDGTG  142 (237)
Q Consensus        71 ~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~--------~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~g  142 (237)
                      +++|||||+++++++|+|+||||.+.||+||+||++||+++        .++ |+++.|||+++++++|+|++..+++.+
T Consensus         3 ~~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~~~k~~~-y~~~~f~rv~~~~~i~~G~~~~~~~~~   81 (172)
T d2igva1           3 RSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLH-FKGSKFHRIIPNFMIQGGDFTRGNGTG   81 (172)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSC-CTTCBCCEEETTTEEEECCTTTSSSSC
T ss_pred             CCEEEEEEEECCEeccEEEEEEcCCCCcHHHHHHHHHHhccccccccCcccc-cCCcceeEEEecceEEcCCccCCCCCC
Confidence            67999999999999999999999999999999999999874        346 999999999999999999999889999


Q ss_pred             cccccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCC
Q 026524          143 GISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPK  222 (237)
Q Consensus       143 g~s~~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~  222 (237)
                      +..+++..+++|.....|..+|+|+||+.+|++++|||||++.++|+||++|+|||+|++|||||++|++.+++ +++|+
T Consensus        82 ~~~~~~~~~~~e~~~~~~~~~G~lsma~~~~~~~~sqFfIt~~~~~~ld~~~~vFG~Vv~Gmdvl~~I~~~~~~-~g~P~  160 (172)
T d2igva1          82 GESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQ-SGKPV  160 (172)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TSCCS
T ss_pred             CcccCCCccCccccccccCCCcEEEEeecCCCCcCceeEeeecCCcccCCceeEEEEEeccHHHHHHHHcCCCC-CCCCC
Confidence            99999999999999888989999999999999999999999999999999999999999999999999998765 89999


Q ss_pred             CCeEEEeeEEee
Q 026524          223 VPCRIINSGELP  234 (237)
Q Consensus       223 ~~v~I~~cG~l~  234 (237)
                      ++|+|.+||+|+
T Consensus       161 ~~i~I~~cG~l~  172 (172)
T d2igva1         161 KDCMIADCGQLK  172 (172)
T ss_dssp             SCEEEEEEEEEC
T ss_pred             CCeEEEeccccC
Confidence            999999999985

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-49  Score=321.90  Aligned_cols=163  Identities=67%  Similarity=1.139  Sum_probs=154.1

Q ss_pred             cceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCC
Q 026524           71 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSS  150 (237)
Q Consensus        71 ~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~  150 (237)
                      +++|||||+++++++|+|+||||.+.||+||+||++||++.++..|+|+.|||+++++++|+|++...++.++...++..
T Consensus         2 n~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~l~~~~~~~~Y~g~~f~rv~~~~~iq~g~~~~~~~~~~~~~~~~~   81 (164)
T d2z6wa1           2 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSR   81 (164)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSC
T ss_pred             CCeEEEEEEECCEeceEEEEEECCCcCcHHHHHHHHHHhcCCCcccCCcEEEEecccceEecCCccCCCCCCCccccCCc
Confidence            67999999999999999999999999999999999999866654599999999999999999999888888888889999


Q ss_pred             CCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEee
Q 026524          151 FEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINS  230 (237)
Q Consensus       151 ~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~c  230 (237)
                      ++++.+...|+.+|+|+||+.++++++|||||++.++++||++|+|||+|++|||||++|++++++ +++|.++|+|.+|
T Consensus        82 ~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfi~~~~~~~ldg~ytVFG~Vv~G~dvl~~I~~~~~~-~~~P~~~i~I~~c  160 (164)
T d2z6wa1          82 FPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSK-SGRTSKKIVITDC  160 (164)
T ss_dssp             BCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCT-TSCCSSCEEEEEE
T ss_pred             CCccccccccCCccEEEEecCCCCCCCcceeccccCCCcccccceEEEEecccHHHHHHHHhCCCC-CCCCCCCEEEEeC
Confidence            999988888889999999999999999999999999999999999999999999999999999877 7899999999999


Q ss_pred             EEee
Q 026524          231 GELP  234 (237)
Q Consensus       231 G~l~  234 (237)
                      |+|.
T Consensus       161 G~l~  164 (164)
T d2z6wa1         161 GQLS  164 (164)
T ss_dssp             EECC
T ss_pred             eecC
Confidence            9983

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-48  Score=319.91  Aligned_cols=161  Identities=61%  Similarity=1.074  Sum_probs=151.4

Q ss_pred             cceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCC
Q 026524           71 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSS  150 (237)
Q Consensus        71 ~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~  150 (237)
                      +++|||||+++++.+|+|+||||.+.||+||+||++||+++++..|+|+.|||++|++++|+|++....+.++.+.++..
T Consensus         1 np~vy~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~Y~g~~f~Rv~~~~~iq~G~~~~~~~~~~~~~~~~~   80 (161)
T d2r99a1           1 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKK   80 (161)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSC
T ss_pred             CCEEEEEEEECCEeceEEEEEEcCCCCcHHHHHHHHhhhhccccccCCcEEEEEEEeeeEEeeeccCCCCCCCccccCcc
Confidence            57999999999999999999999999999999999999876644499999999999999999999988888888888988


Q ss_pred             CCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEee
Q 026524          151 FEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINS  230 (237)
Q Consensus       151 ~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~c  230 (237)
                      ++++....+|..+|+|+|++.+|++++|||||++.++++||++|+|||+|++|||||++|+..++ ++++|.++|+|.+|
T Consensus        81 ~~~~~~~~~~~~~G~ls~~~~~~~s~~sqFfI~~~~~~~Ldg~~tvFG~Vv~G~dvl~~I~~~~~-~~~~P~~~i~I~~C  159 (161)
T d2r99a1          81 FDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGS-KDGKPKQKVIIADC  159 (161)
T ss_dssp             BCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTCCCSSCEEEEEE
T ss_pred             ccccccccccccceeeeecccCCCCcCcceEeccCCccccCCcceEEEEEeehHHHHHHHHccCC-CCCcCCCCEEEEeC
Confidence            88899999999999999999999999999999999999999999999999999999999998754 58999999999999


Q ss_pred             EE
Q 026524          231 GE  232 (237)
Q Consensus       231 G~  232 (237)
                      |+
T Consensus       160 Ge  161 (161)
T d2r99a1         160 GE  161 (161)
T ss_dssp             EE
T ss_pred             CC
Confidence            96

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=8.1e-49  Score=323.10  Aligned_cols=161  Identities=60%  Similarity=1.020  Sum_probs=153.0

Q ss_pred             cceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccC-------CCcccCCCEEEEEEcCcEEEeCCCCCCCCCCc
Q 026524           71 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGE-------KGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGG  143 (237)
Q Consensus        71 ~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~-------~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg  143 (237)
                      +++|||||++++++.|+|+||||.+.||+||+||++||+++       .++ |+++.|||+++++++|+|+...+++.++
T Consensus         3 r~~vy~Di~i~~t~~G~ivIeL~~~~aP~tv~nF~~l~~~~~~~~~~~~~~-y~g~~~~rv~~~~~iq~g~~~~~~~~~~   81 (170)
T d1qnga_           3 RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLH-YKNSIFHRIIPQFMCQGGDITNGNGSGG   81 (170)
T ss_dssp             SCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEECTTSSEEC-CTTCBCCEEETTTEEEECCTTTSSSSCC
T ss_pred             CCEEEEEEEECCEEccEEEEEECCCCChHHHHHHHhhhccccccccCccCc-cCcccceEEEeCceEEecCccCCCCCCC
Confidence            68999999999999999999999999999999999999754       345 9999999999999999999998888888


Q ss_pred             ccccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCC
Q 026524          144 ISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKV  223 (237)
Q Consensus       144 ~s~~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~  223 (237)
                      ...++..++++...+.|+.+|+|+||+.++++++|||||++.++|+||++|+|||+|++|||||++|++.+++ +++|.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~Vv~Gmdvl~~I~~~~~~-~g~P~~  160 (170)
T d1qnga_          82 ESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAK-SGYVKR  160 (170)
T ss_dssp             CBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCSS
T ss_pred             cccCCCccccccccccCCCCeEEEEeecCCCCccccceeccCCcccccccccEEeEEeccHHHHHHHHhcCCC-CcCCcc
Confidence            8899999999999999999999999999999999999999999999999999999999999999999999877 689999


Q ss_pred             CeEEEeeEEe
Q 026524          224 PCRIINSGEL  233 (237)
Q Consensus       224 ~v~I~~cG~l  233 (237)
                      +|+|.+||+|
T Consensus       161 ~i~I~~CG~l  170 (170)
T d1qnga_         161 SVVITDCGEL  170 (170)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEeeEcC
Confidence            9999999997

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

Probab=100.00  E-value=5.4e-48  Score=318.89  Aligned_cols=162  Identities=59%  Similarity=0.979  Sum_probs=153.9

Q ss_pred             cceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCC---------CcccCCCEEEEEEcCcEEEeCCCCCCCCC
Q 026524           71 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEK---------GYGYKGCSFHRIIKDFMIQGGDFTEGDGT  141 (237)
Q Consensus        71 ~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~---------g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~  141 (237)
                      +++|||||+++++.+|+|+||||.+.||+||+||++||+++.         ++ |+++.|||+++++++|+|+...+++.
T Consensus         3 ~~~v~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~l~~~~~~~~~~~~k~~~-Y~~~~f~Rv~~~~~iq~g~~~~~~~~   81 (174)
T d1a33a_           3 RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLH-YKGSTFHRVIKNFMIQGGDFTKGDGT   81 (174)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCC-CTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCEEEEEEEECCEeceEEEEEECCCCChHHHHHHHHHHhcccCCCcccCccce-eCCceeeEEEeCCEEeeCCCCCCCCC
Confidence            679999999999999999999999999999999999998743         45 99999999999999999999888888


Q ss_pred             CcccccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCC
Q 026524          142 GGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYP  221 (237)
Q Consensus       142 gg~s~~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P  221 (237)
                      ++.+.++..+.++.....|.++|+|+|++.+|++++|||||++.++|+||++|+|||+|++|||||++|++++++.+++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~s~~sqFfI~~~~~p~ld~~~~vFG~VveG~dvl~~I~~~~t~~~~~P  161 (174)
T d1a33a_          82 GGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRP  161 (174)
T ss_dssp             CCCCTTSSCBCCCCSCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCB
T ss_pred             CCCCccCccccccccccccCcceeeeeeccCCCCCCcccccccCCcccccccceeEEEEechHHHHHHHHhCCcCCCCCC
Confidence            88888888888888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEeeEEe
Q 026524          222 KVPCRIINSGEL  233 (237)
Q Consensus       222 ~~~v~I~~cG~l  233 (237)
                      .++|+|.+||+|
T Consensus       162 ~~~i~I~~cGel  173 (174)
T d1a33a_         162 LADVVILNCGEL  173 (174)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCEEEEeeEEE
Confidence            999999999997

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

Probab=100.00  E-value=5e-48  Score=316.34  Aligned_cols=160  Identities=64%  Similarity=1.098  Sum_probs=151.4

Q ss_pred             ceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCC
Q 026524           72 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSF  151 (237)
Q Consensus        72 ~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~  151 (237)
                      .+|||||+++++++|+|+||||.+.||+||+||++||+++.+.+|+|+.|||++|++++|+|++..+++.++.+.++..+
T Consensus         2 ~~V~fDi~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~   81 (162)
T d2cfea1           2 SNVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGTGGKSIYGAKF   81 (162)
T ss_dssp             CCEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCB
T ss_pred             CeEEEEEEECCEEeeEEEEEEcCCCChHHHHHHHHHHhhccCCccCCCEEEEEEecceEecCCCCCCCCCCCcccCCCcc
Confidence            36899999999999999999999999999999999998776656999999999999999999999888888888889999


Q ss_pred             CCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeeE
Q 026524          152 EDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSG  231 (237)
Q Consensus       152 ~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~cG  231 (237)
                      .+|+..+.|+.+|+|+|++.++++++|||||++.+.++||++|+|||+|++|||||++|+..+ +++++|.++|+|.+||
T Consensus        82 ~~e~~~~~h~~~G~vsm~~~~~~s~~sqF~I~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~-~~~~~P~~~i~I~~cg  160 (162)
T d2cfea1          82 ADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIEAEG-SGSGKPRSRIEIAKCG  160 (162)
T ss_dssp             CCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTC-CTTSCCSSCEEEEEEE
T ss_pred             ccccCCCCCCCceEEEEeecCCCCCCcceEEeecCCccccccceEEEEEEehHHHHHHHhcCC-CCCCCCCCCeEEEeeE
Confidence            999999999999999999999999999999999999999999999999999999999998875 4589999999999999


Q ss_pred             E
Q 026524          232 E  232 (237)
Q Consensus       232 ~  232 (237)
                      |
T Consensus       161 v  161 (162)
T d2cfea1         161 V  161 (162)
T ss_dssp             E
T ss_pred             c
Confidence            7

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

Probab=100.00  E-value=1e-47  Score=316.89  Aligned_cols=162  Identities=60%  Similarity=1.074  Sum_probs=151.9

Q ss_pred             ccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCc-------ccCCCEEEEEEcCcEEEeCCCCCCCCCC
Q 026524           70 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGY-------GYKGCSFHRIIKDFMIQGGDFTEGDGTG  142 (237)
Q Consensus        70 ~~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~-------~Y~g~~f~Rii~~~~iqgGd~~~~~g~g  142 (237)
                      .+++|||||+++++++|+|+||||.+.||+||+||++||+  .++       +|+++.|||+++++++|+|++..+.+..
T Consensus         5 ~np~v~~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~--~~~~~~~~~~~y~~~~f~rv~~~~~~q~G~~~~~~~~~   82 (173)
T d1qoia_           5 VNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCT--GEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTG   82 (173)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHH--SCCEETTEECSSTTCBCCEEETTTEEEECCTTTSSSCC
T ss_pred             CCCEEEEEEEECCEeCeEEEEEEcCCCCcHHHHHHHHhhc--ccccccCCCCCcCCcccceeccceeeccCCcccCCcce
Confidence            4889999999999999999999999999999999999996  443       4999999999999999999998777777


Q ss_pred             cccccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCC
Q 026524          143 GISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPK  222 (237)
Q Consensus       143 g~s~~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~  222 (237)
                      ....++.+++++.+...|..+|+|+|++.++++++|||||++.+.++||++|+|||+|++|||||++|++++++++++|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~G~l~ma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P~  162 (173)
T d1qoia_          83 VASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPK  162 (173)
T ss_dssp             CCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBS
T ss_pred             eecccCCcccccccccccCCCcEEEeeecCCCCCCceeeeeccCCccCCcceeEEEEEechHHHHHHHHhCCcCCCCcCC
Confidence            77777788888888888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEeeEEe
Q 026524          223 VPCRIINSGEL  233 (237)
Q Consensus       223 ~~v~I~~cG~l  233 (237)
                      ++|+|.+||+|
T Consensus       163 ~~i~I~~cGel  173 (173)
T d1qoia_         163 LPVVISQCGEM  173 (173)
T ss_dssp             SCEEEEEEEEC
T ss_pred             CCEEEEcccCC
Confidence            99999999997

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.6e-47  Score=319.91  Aligned_cols=163  Identities=66%  Similarity=1.068  Sum_probs=154.3

Q ss_pred             cceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCC---------CcccCCCEEEEEEcCcEEEeCCCCCCCCC
Q 026524           71 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEK---------GYGYKGCSFHRIIKDFMIQGGDFTEGDGT  141 (237)
Q Consensus        71 ~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~---------g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~  141 (237)
                      +++|||||+++++.+|+|+||||.+.||+||+||++||+++.         ++ |+|+.|||+++++++|+|++....+.
T Consensus        14 np~v~~Di~i~~~~~G~I~IeL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~-y~g~~f~rv~~~~~i~~G~~~~~~~~   92 (195)
T d1ihga2          14 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLH-FKGCPFHRIIKKFMIQGGDFSNQNGT   92 (195)
T ss_dssp             SCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSC-CTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCEEEEEEEECCEeeeEEEEEECCCCChHHHHHHHHHhccccccccccCCccc-cCCceeeEEEcCceeecCCccCCCCC
Confidence            889999999999999999999999999999999999998643         34 99999999999999999999888888


Q ss_pred             CcccccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCC
Q 026524          142 GGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYP  221 (237)
Q Consensus       142 gg~s~~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P  221 (237)
                      ++...++..+++|.....|+.+|+|+|++.++++++|||||+|+++++||++|+|||+|++|||||++|++++++ +++|
T Consensus        93 ~~~~~~~~~~~~~~~~~~h~~~G~lsm~~~~~~s~~SqFfItl~~~~~LDg~ytVFG~Vv~Gmdvl~~I~~~~t~-~~~P  171 (195)
T d1ihga2          93 GGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVK-GEKP  171 (195)
T ss_dssp             CCCBTTBSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEE-TTEE
T ss_pred             CCccCCCCcccccccCcccCcceEEeeeecCCCCCCceeEeeccCCcccCCcceEEEEEecCHHHHHHHHcCCCC-CCCc
Confidence            888888999999999999999999999999999999999999999999999999999999999999999999887 7999


Q ss_pred             CCCeEEEeeEEeeC
Q 026524          222 KVPCRIINSGELPL  235 (237)
Q Consensus       222 ~~~v~I~~cG~l~~  235 (237)
                      .++|+|.+||+|+.
T Consensus       172 ~~~i~I~~cG~l~~  185 (195)
T d1ihga2         172 AKLCVIAECGELKE  185 (195)
T ss_dssp             SSCEEEEEEEEECT
T ss_pred             CCCeEEEECcccCC
Confidence            99999999999964

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=1.8e-46  Score=313.35  Aligned_cols=163  Identities=51%  Similarity=0.954  Sum_probs=153.4

Q ss_pred             cceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCC-----cccCCCEEEEEEcCcEEEeCCCCCCCCCCccc
Q 026524           71 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKG-----YGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS  145 (237)
Q Consensus        71 ~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g-----~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s  145 (237)
                      +++|||||+++++++|+|+||||.+.||+||+||++||+++.+     .+|+|+.|||+++++++|+|++....+.+...
T Consensus        16 np~V~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~Y~g~~f~rv~~~~~i~~G~~~~~~~~~~~~   95 (186)
T d1z81a1          16 NPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLS   95 (186)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTTEEEECCTTTSSSCCCCB
T ss_pred             CCEEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHHhcccccCCcccccCCCeeeeeecceeeecCCccccCCccccc
Confidence            7899999999999999999999999999999999999986542     24999999999999999999998888888888


Q ss_pred             ccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcC--HHHHHHhhcCCCCC-CCCCC
Q 026524          146 IYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDG--MDVVRKLESVETSR-TDYPK  222 (237)
Q Consensus       146 ~~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG--~dvl~~I~~~~t~~-~~~P~  222 (237)
                      .++..++++.....|+++|+++|++.++++++|||||++++.++||++|+|||+|++|  ||+|++|+++++++ +++|.
T Consensus        96 ~~~~~~~~~~~~~~~~~~G~~~~~~~g~~~~~sqFfIt~~~~p~Ldg~~tVFG~Vv~G~~mdvv~kI~~~~~~~~~~~P~  175 (186)
T d1z81a1          96 IYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPK  175 (186)
T ss_dssp             TTBSCCCCCCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTCCBS
T ss_pred             ccCCcccccccccccCCCccchhhhcCCCccccceeeecccccccCCCccEEEEEEeCccHHHHHHHhccCCCCCCCccC
Confidence            8899999999999999999999999999999999999999999999999999999998  99999999999875 78999


Q ss_pred             CCeEEEeeEEe
Q 026524          223 VPCRIINSGEL  233 (237)
Q Consensus       223 ~~v~I~~cG~l  233 (237)
                      ++|+|.+||+|
T Consensus       176 ~~i~I~~CGel  186 (186)
T d1z81a1         176 IPINVVECGEL  186 (186)
T ss_dssp             SCEEEEEEEEC
T ss_pred             CCEEEEeCCcC
Confidence            99999999996

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

Probab=100.00  E-value=1e-45  Score=304.95  Aligned_cols=162  Identities=57%  Similarity=0.965  Sum_probs=122.0

Q ss_pred             ceEEEEEE-----ECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccc
Q 026524           72 TKVFFDVD-----IGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISI  146 (237)
Q Consensus        72 ~~v~~di~-----~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~  146 (237)
                      ++|||||+     ++.|++|+|+||||.+.||+||+||++||+++.+.+|+++.|||+++++++|+||+..+++.++...
T Consensus         2 ~~v~~di~~~~~~~~~T~~G~i~IeL~~~~aP~tv~nF~~l~~~~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~   81 (171)
T d2c3ba1           2 SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSI   81 (171)
T ss_dssp             CCEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECC------------
T ss_pred             CeEEEeeeccccccccceeeEEEEEEcCCCChHHHHHHHHHhhhcccccccCceeeEEEEEEeeEcCCccCCCCCCCCcC
Confidence            47999998     6678999999999999999999999999986555569999999999999999999988888888888


Q ss_pred             cCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEc--CHHHHHHhhcCCCCC-CCCCCC
Q 026524          147 YGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVID--GMDVVRKLESVETSR-TDYPKV  223 (237)
Q Consensus       147 ~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~Vie--G~dvl~~I~~~~t~~-~~~P~~  223 (237)
                      ++..+.++...+.|+.+|+|+||+.+|++++|||||++.+.|+||++|+|||+|++  |||||++|++++++. +.+|..
T Consensus        82 ~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vie~~G~dvl~~I~~~~t~~g~~~p~~  161 (171)
T d2c3ba1          82 YGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNT  161 (171)
T ss_dssp             ----------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTTSCCCSSS
T ss_pred             CCCccccccccccCCCCceEEeeecCCCCCCcceeeccCCccccCCCceEEEEEEeccCHHHHHHHHcCCCCCCCcCCCC
Confidence            88888888888899899999999999999999999999999999999999999995  999999999999887 447999


Q ss_pred             CeEEEeeEEe
Q 026524          224 PCRIINSGEL  233 (237)
Q Consensus       224 ~v~I~~cG~l  233 (237)
                      +|+|.+||+|
T Consensus       162 ~v~I~~cGel  171 (171)
T d2c3ba1         162 RPKIVNCGEL  171 (171)
T ss_dssp             CCEEEEEEEC
T ss_pred             CEEEEeCccC
Confidence            9999999997

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-43  Score=287.39  Aligned_cols=150  Identities=49%  Similarity=0.740  Sum_probs=135.2

Q ss_pred             CeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcc-cccC
Q 026524           82 GKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLKH  160 (237)
Q Consensus        82 ~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~-~~~h  160 (237)
                      .|+.|+|+||||.+.||++|+||++||+  .++ |+|+.|||++++++||+||+... +.++...++..+++|.. .++|
T Consensus         6 ~T~~G~i~ieL~~~~aP~tv~nF~~L~~--~g~-Y~~~~f~rv~~~~~iq~Gd~~~~-~~~~~~~~~~~~~~e~~~~~~~   81 (159)
T d2ok3a1           6 HTDVGDIKIEVFCERTPKTCENFLALCA--SNY-YNGCIFHRNIKGFMVQTGDPTGT-GRGGNSIWGKKFEDEYSEYLKH   81 (159)
T ss_dssp             EETTEEEEEEECTTTCHHHHHHHHHHHH--TTT-TTTCBCCEEETTTEEEECCTTSS-SSCCCCTTSSCBCCCCCTTCCS
T ss_pred             EeCCeEEEEEEcCCCChHHHHHHHHHHh--hhc-ccceeEecccCCeEEEeCCcccc-CCCCcccCCCccccccccCCCC
Confidence            3689999999999999999999999995  667 99999999999999999998743 44555666777777754 6789


Q ss_pred             CCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCC-CCCCCCCeEEEeeEEeeC
Q 026524          161 VGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSR-TDYPKVPCRIINSGELPL  235 (237)
Q Consensus       161 ~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~-~~~P~~~v~I~~cG~l~~  235 (237)
                      .++|+|+|++.++++++|||||++.+.|+||++|+|||+|++|||+|++|+++++++ +++|.++|+|.+|++|.+
T Consensus        82 ~~~G~lsma~~~~~s~~sqFfIt~~~~p~ld~~~tvFG~V~~G~~vl~~I~~~~~~~~~~~P~~~i~I~~v~i~~~  157 (159)
T d2ok3a1          82 NVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHAN  157 (159)
T ss_dssp             CSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEEECC
T ss_pred             CCCeEEEEeeCCCCCcCcceEeeeccCcccccceEEEEecccchHHHHHHHcCcCCCCCCCcCCCcEEEEEEEEeC
Confidence            999999999999999999999999999999999999999999999999999999976 578999999999999853

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=9.3e-43  Score=282.54  Aligned_cols=146  Identities=51%  Similarity=0.845  Sum_probs=136.8

Q ss_pred             eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcc-cccCC
Q 026524           83 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLKHV  161 (237)
Q Consensus        83 t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~-~~~h~  161 (237)
                      |++|+|+||||.+.||++|+||++||+  .|+ |+|+.|||+++++++|+||+. +.+.++.+.++..++++.. .+.|.
T Consensus         8 T~~G~i~ieL~~~~aP~tv~nF~~l~~--~g~-Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~~~~~~~~~~   83 (155)
T d2fu0a1           8 TTMGDIHISLFYKECKKTVQNFSVHSI--NGY-YNNCIFHRVIKHFMVQTGDPS-GDGTGGESIWGNEFEDEFFDHLNHS   83 (155)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHH--TTT-TTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCCCBTTBCSS
T ss_pred             EcccEEEEEEcCCCChHHHHHHhhHhh--CCc-cccceeeeeeecceeeccCCC-CCCcCCcccCCCccccccccccccC
Confidence            699999999999999999999999995  677 999999999999999999986 5667778888988988876 57888


Q ss_pred             CCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeeEE
Q 026524          162 GPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGE  232 (237)
Q Consensus       162 ~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~cG~  232 (237)
                      ++|+++|++.++++++|||||++.+.|+||++|+|||+|++|||||++|++++++++++|+++|+|.+|.+
T Consensus        84 ~~~~~~~~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~~vv~~I~~~~t~~~~~P~~~i~I~~v~i  154 (155)
T d2fu0a1          84 KPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKI  154 (155)
T ss_dssp             SSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEEEEE
T ss_pred             CccEEEecccCCCCCCccceecccCccccccceEEEEEEeccHHHHHHHHhCCCCCCCCcCCCcEEEEEEE
Confidence            88999999999999999999999999999999999999999999999999999999999999999999864

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-43  Score=286.36  Aligned_cols=152  Identities=51%  Similarity=0.885  Sum_probs=140.0

Q ss_pred             cceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCC
Q 026524           71 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSS  150 (237)
Q Consensus        71 ~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~  150 (237)
                      .++|+|+     |++|+|+||||.+.||+||+||++||+  .++ |+|+.|||+++++++|+||+. +.+.++...++..
T Consensus        11 ~p~v~~~-----T~~G~i~ieL~~~~aP~tv~nF~~L~~--~g~-Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~   81 (166)
T d1xwna1          11 PPNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELAR--RGY-YNGTKFHRIIKDFMIQGGDPT-GTGRGGASIYGKQ   81 (166)
T ss_dssp             CCEEEEE-----ESSCEEEEEECTTTCHHHHHHHHHHHH--HTS-STTCCEEEEETTTEEEECCST-TTTSSCCCSSCSC
T ss_pred             CCEEEEE-----ECceeEEEEEcCCCChHHHHHHHHHHh--cCC-cCceeeeEEcccEEEEeCCCC-CCCCCCccCCCCc
Confidence            4678887     567999999999999999999999995  778 999999999999999999986 6677777888888


Q ss_pred             CCCCc-ccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEe
Q 026524          151 FEDES-FVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN  229 (237)
Q Consensus       151 ~~de~-~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~  229 (237)
                      +++|. ..+.|+++|+|+|++.++++++|||||++.+.++||++|+|||+|++|||||++|++++++++++|.++|+|.+
T Consensus        82 ~~~e~~~~~~~~~~G~lsm~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P~~~I~I~~  161 (166)
T d1xwna1          82 FEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIK  161 (166)
T ss_dssp             CCCCCCTTCCSCSSSEEEEEEEETTEEEEEEEEECSCCSTTTTTSEEEEECSSCHHHHHHHHHSCBCSSSCBSSCCCEEE
T ss_pred             cccccCCCCCCCCCeEEEecccCCCCCCcceEEeecChhhccccceEEEEEechHHHHHHHHhCCCCCCCCCCCCeEEEE
Confidence            88875 46788899999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             eE
Q 026524          230 SG  231 (237)
Q Consensus       230 cG  231 (237)
                      .-
T Consensus       162 a~  163 (166)
T d1xwna1         162 AY  163 (166)
T ss_dssp             EE
T ss_pred             ee
Confidence            64

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-42  Score=285.53  Aligned_cols=149  Identities=48%  Similarity=0.800  Sum_probs=138.6

Q ss_pred             eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcc-cccCC
Q 026524           83 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLKHV  161 (237)
Q Consensus        83 t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~-~~~h~  161 (237)
                      |+.|+|+||||.+.||+||+||++||+  .++ |+|+.|||+++++++|+||+. .++.++...++.++++|.. .++|.
T Consensus         7 T~~G~i~IeL~~~~aP~tv~nF~~L~~--~~~-Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~E~~~~l~~~   82 (178)
T d1zkca1           7 TNKGDLNLELHCDLTPKTCENFIRLCK--KHY-YDGTIFHRSIRNFVIQGGDPT-GTGTGGESYWGKPFKDEFRPNLSHT   82 (178)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHH--TTT-TTTEEEEEEETTTEEEECCTT-SSSSCCCBTTBSCBCCCCCTTCCSC
T ss_pred             eCCEEEEEEEcCCCChHHHHHHHHHHh--cCC-cCceEeeeccceeEEecCCcc-CCCCCCcccCCCCcCCccccccCCC
Confidence            589999999999999999999999994  677 999999999999999999986 5677888888999988854 68898


Q ss_pred             CCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCC-CCCCCCCeEEEeeEEeeC
Q 026524          162 GPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSR-TDYPKVPCRIINSGELPL  235 (237)
Q Consensus       162 ~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~-~~~P~~~v~I~~cG~l~~  235 (237)
                      .+|+|+|++.++++++|||||++.++++||++|+|||+|++|||||++|+++++++ +++|.++|+|.+|.+|.+
T Consensus        83 ~~G~lsma~~~~~s~~sqF~It~~~~~~ld~~~~vFG~Vv~G~dvl~~I~~~~t~~~~~~P~~~v~I~~~~Il~~  157 (178)
T d1zkca1          83 GRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVFVD  157 (178)
T ss_dssp             STTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEEEEC
T ss_pred             CCeEEEEeecCCCCccceeeccccCCcccCCcceEEEEeeCcHHHHHHHHcCCCCCCCCccCCCeEEEEEEEEcC
Confidence            99999999999999999999999999999999999999999999999999999974 789999999999999864

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=3.4e-42  Score=283.28  Aligned_cols=152  Identities=44%  Similarity=0.758  Sum_probs=136.9

Q ss_pred             eEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCC
Q 026524           73 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFE  152 (237)
Q Consensus        73 ~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~  152 (237)
                      +.|..+.+   +.|+|+||||.+.||++|+||++||  +.|+ |+|+.|||+++++++|||++. +.+.++.+.++..++
T Consensus        16 ~~~V~l~T---~~G~i~IeL~~d~aP~tv~nF~~L~--~~g~-Y~~~~f~rv~~~~~iq~g~~~-~~~~~~~~~~~~~~~   88 (169)
T d2b71a1          16 RGYITIYT---NLGDFEVELYWYHSPKTCLNFYTLC--EMGF-YDNTIFHRVIPNFVIQGGDPT-GTGKGGKSIYGEYFE   88 (169)
T ss_dssp             SCEEEEEE---TTEEEEEEECTTTSHHHHHHHHHHH--HTTT-TTTEEEEEEETTTEEEEEETT-SSSSCCCBTTBSCBC
T ss_pred             ccEEEEEe---CceeEEEEEeCCCCcHHHHHHHHHh--hCCc-cceeeeccccceeeEeccccc-cccCCCccccccccc
Confidence            34555544   7899999999999999999999999  4788 999999999999999999986 444556666777777


Q ss_pred             CCcc-cccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeeE
Q 026524          153 DESF-VLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSG  231 (237)
Q Consensus       153 de~~-~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~cG  231 (237)
                      +|.. .++|.++|+|+|++.+|++++|||||++++.|+||++|+|||+|++|||||++|++++++++++|.++|+|.+|+
T Consensus        89 ~e~~~~l~h~~~g~ls~~~~~p~s~~sqFfIt~~~~~~ld~~~tvFG~Vv~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~  168 (169)
T d2b71a1          89 DEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTS  168 (169)
T ss_dssp             CCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEEEE
T ss_pred             cccccccCCCCcEEEEhhhCCCCCCCCEEEEecCCcchhhhhcceeeEEeccHHHHHHHHhCCCCCCCCCCCCeEEEEcc
Confidence            7754 688999999999999999999999999999999999999999999999999999999999999999999999986

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.4e-42  Score=280.61  Aligned_cols=153  Identities=33%  Similarity=0.548  Sum_probs=134.1

Q ss_pred             cceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCC
Q 026524           71 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSS  150 (237)
Q Consensus        71 ~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~  150 (237)
                      +++|.|+     |+.|+|+||||.+.||+||+||++||+  .++ |+|+.|||++++|++|+|+.....+.+.   ++.+
T Consensus         4 ~~~V~l~-----T~~G~i~ieL~~~~aP~tv~nF~~L~~--~~~-Y~g~~fhRv~~~~~iq~G~~~~~~~~~~---~~~~   72 (166)
T d1v9ta_           4 DPHVLLT-----TSAGNIELELDKQKAPVSVQNFVDYVN--SGF-YNNTTFHRVIPGFMIQGGGFTEQMQQKK---PNPP   72 (166)
T ss_dssp             SCEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHH--TTT-TTTCBEEEEETTTEEEESSBCTTCCBCC---CCCC
T ss_pred             CCEEEEE-----ECCeeEEEEEeCCCChHHHHHHHHHhh--CCc-cccceeeEEEEEeecccCCcCCcccccC---CCCC
Confidence            5677777     578999999999999999999999995  778 9999999999999999999876555443   4677


Q ss_pred             CCCCcccccCCCCeEEEEee-CCCCCCCceeEEEecCCCCCCCC-----CeEEEEEEcCHHHHHHhhcCCCCCC----CC
Q 026524          151 FEDESFVLKHVGPGVLSMAN-AGPNTNGSQFFICTVKTPWLDNR-----HVVFGHVIDGMDVVRKLESVETSRT----DY  220 (237)
Q Consensus       151 ~~de~~~~~h~~~G~lsma~-~g~~s~gSqFfItl~~~~~ld~~-----~~vFG~VieG~dvl~~I~~~~t~~~----~~  220 (237)
                      +++|.....|+.+|.|+|++ .++++++|||||++.+.++||+.     |+|||+|++|||||++|+++++++.    ++
T Consensus        73 ~~~e~~~~~~~~rg~v~~~~~~~~~s~~sqFfI~~~~~~~ld~~~~~~~~tvfG~VveG~dvl~~I~~~~~~~~~~~~~~  152 (166)
T d1v9ta_          73 IKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNV  152 (166)
T ss_dssp             BCCCGGGSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEEETTEEEE
T ss_pred             ccccccccccccCCEEEEEeeecCCCcccccccccCCccccccccccCCEEEeeEEeccHHHHHHHHhCcccCCCCCCCc
Confidence            88887755555799999998 45999999999999999998864     8999999999999999999998763    48


Q ss_pred             CCCCeEEEeeEEee
Q 026524          221 PKVPCRIINSGELP  234 (237)
Q Consensus       221 P~~~v~I~~cG~l~  234 (237)
                      |.++|+|.+|++||
T Consensus       153 P~~~v~I~~~~vlp  166 (166)
T d1v9ta_         153 PSKPVVILSATVLP  166 (166)
T ss_dssp             ESSCCBEEEEEECC
T ss_pred             cCCCeEEEEEEEcC
Confidence            99999999999996

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-40  Score=272.49  Aligned_cols=148  Identities=48%  Similarity=0.683  Sum_probs=130.5

Q ss_pred             CeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcccccCC
Q 026524           82 GKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHV  161 (237)
Q Consensus        82 ~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~~~~h~  161 (237)
                      .|+.|+|+||||.+.||+||+||++||+  .++ |+|+.|||+++++++|+|++......+.....+....++...+.|.
T Consensus        15 ~T~~G~i~ieL~~~~aP~tv~nF~~l~~--~g~-Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (164)
T d2a2na1          15 HTSMGDIHTKLFPVECPKTVENFCVHSR--NGY-YNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHD   91 (164)
T ss_dssp             EETTEEEEEEECTTTCHHHHHHHHHHHH--TTT-TTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCCTTCCSC
T ss_pred             EeceeEEEEEEcCCCChHHHHHHHHHHh--CCC-cccceeeEEeeeeeEeecccccccCCCceeeecccccccccccccC
Confidence            3799999999999999999999999994  778 9999999999999999999875544444443333333345578899


Q ss_pred             CCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCC-CCCCCCCeEEEeeEE
Q 026524          162 GPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSR-TDYPKVPCRIINSGE  232 (237)
Q Consensus       162 ~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~-~~~P~~~v~I~~cG~  232 (237)
                      ++|+++|++.++++++|||||++.+.++||++|+|||+|++|||||++|+++++++ +++|.++|+|.++.+
T Consensus        92 ~~~~l~~~~~~~~s~~sqFfI~~~~~~~ld~~~tVFG~V~~G~dvv~~I~~~~~~~~~~~P~~~V~I~~v~i  163 (164)
T d2a2na1          92 RPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITV  163 (164)
T ss_dssp             SSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEEEEE
T ss_pred             ccceeehhhcCCCCCcccceecccCccccccceeEEEEecChHHHHHHHHcCCcCCCCCCcCCCcEEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999985 689999999999875

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=5.7e-40  Score=269.81  Aligned_cols=146  Identities=47%  Similarity=0.738  Sum_probs=128.0

Q ss_pred             eeceeEEEEecCCCChhHHHHHHHHhccCCCc------------ccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCC
Q 026524           83 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGY------------GYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSS  150 (237)
Q Consensus        83 t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~------------~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~  150 (237)
                      |+.|+|+||||++.||+||+||++||++.+++            .|+++.|||+++++++|+|++.. .+.++.   ...
T Consensus        10 T~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~g~~~~-~~~~~~---~~~   85 (171)
T d1w74a_          10 TNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTG-TGRGGP---GYK   85 (171)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTTS-SSSCCS---SCC
T ss_pred             ECCEEEEEEEcCCCChHHHHHHHHHHhcCCccccccccccccCceECCeecccccCCceeEcccccC-CCCCCc---ccc
Confidence            68999999999999999999999999865321            39999999999999999999863 333332   223


Q ss_pred             CCCC-cccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEE--cCHHHHHHhhcCCCCCCCCCCCCeEE
Q 026524          151 FEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVI--DGMDVVRKLESVETSRTDYPKVPCRI  227 (237)
Q Consensus       151 ~~de-~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~Vi--eG~dvl~~I~~~~t~~~~~P~~~v~I  227 (237)
                      +.+| ...++|+++|+|+|++.++++++|||||++.+.|+||++|+|||+|+  ||||||++|++++++++++|.++|+|
T Consensus        86 ~~~e~~~~~~~~~~g~v~~~~~~~~s~~sqFfIt~~~~p~ld~~~tVFG~Vv~geGmdvl~~I~~~~~~~~~~P~~~i~I  165 (171)
T d1w74a_          86 FADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI  165 (171)
T ss_dssp             BCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTTSCBSSCCEE
T ss_pred             cccccCCCcCCCCCEEEEEEecCCCCCCcceEeeccCCCccccccEEEEEEeccccHHHHHHHHcCCcCCCCccCCCcEE
Confidence            4444 45788999999999999999999999999999999999999999999  59999999999999999999999999


Q ss_pred             EeeEE
Q 026524          228 INSGE  232 (237)
Q Consensus       228 ~~cG~  232 (237)
                      .++.+
T Consensus       166 ~~v~i  170 (171)
T d1w74a_         166 ESITI  170 (171)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99875

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.7e-39  Score=265.59  Aligned_cols=145  Identities=36%  Similarity=0.575  Sum_probs=125.6

Q ss_pred             eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcc-cccCC
Q 026524           83 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLKHV  161 (237)
Q Consensus        83 t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~-~~~h~  161 (237)
                      |+.|+|+||||.+.||+||+||++||  +.++ |+|+.|||++++|++|+|++....+.+   .++.++++|.. .+.| 
T Consensus         6 T~~G~i~ieL~~~~aP~t~~nF~~l~--~~g~-Y~g~~fhrv~~~~~iq~G~~~~~~~~~---~~~~~~~~e~~~~~~h-   78 (164)
T d1lopa_           6 TNHGDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGFEPGMKQK---ATKEPIKNEANNGLKN-   78 (164)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHH--HTTT-TTTEECCEEETTTEEEESSEETTTEEC---CCCCCBCCCCCSSCCC-
T ss_pred             eCCeEEEEEEcCCCCHHHHHHHHHHH--HccC-cCCceeeEEcCCceeeeeccccCCcCC---ccCCCccccccccccc-
Confidence            68999999999999999999999999  4788 999999999999999999976544332   24667878765 5555 


Q ss_pred             CCeEEEEeeC-CCCCCCceeEEEecCC--------CCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCC----CCCCCeEEE
Q 026524          162 GPGVLSMANA-GPNTNGSQFFICTVKT--------PWLDNRHVVFGHVIDGMDVVRKLESVETSRTD----YPKVPCRII  228 (237)
Q Consensus       162 ~~G~lsma~~-g~~s~gSqFfItl~~~--------~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~----~P~~~v~I~  228 (237)
                      .+|.|+|++. ++++++|||||++.+.        +++|++|+|||+|++|||||++|+++++++.+    +|.++|+|.
T Consensus        79 ~~g~l~~~~~~~~~~~~sqFfi~~~~~~~~~~~~~~~~~~~ytvFG~Vv~G~dvl~~I~~~~t~~~~~~~~~P~~~v~I~  158 (164)
T d1lopa_          79 TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIE  158 (164)
T ss_dssp             CTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCEEE
T ss_pred             eeeEEEEeccCCCCCccceeeeeccccccccccCCCcCCCceeecCEEeccHHHHHHHHhCCcCCCCCcCCCcCCCeEEE
Confidence            6899999975 6999999999999865        78899999999999999999999999987654    999999999


Q ss_pred             eeEEee
Q 026524          229 NSGELP  234 (237)
Q Consensus       229 ~cG~l~  234 (237)
                      ++.+++
T Consensus       159 ~v~I~e  164 (164)
T d1lopa_         159 SVTVSE  164 (164)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            997753