Citrus Sinensis ID: 026542

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
Protein Sequence
MEAGTIFYSAIPWKPKQPFPRNPSSFPRFIRASASSQSQGGYRGPKPSQDLVADWVMNNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGLVWLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEcccccHHHHHHHHHHHHHHHHcccccEEEEEEccEEEEEEEEEccccccccHHHHccccccHHHHHHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHccccccccccccccccccccccEEccccccccccccccccccHHHHHHHHcccHHHHHccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccEEEcccccHHHHHHHHHHHHHHHHcccccEEEEEEcccEEEEEEEccccccccccEEcccccccccHHHHHHHHccccEEEEEEEcccccccccccccccc
Coil and Loop (DISEMBL)
MEAGTIFYsaipwkpkqpfprnpssfprfirasassqsqggyrgpkpsqdlVADWVMnnddavrslpiyvGGASLLAVLFNRtvsgiapvadasssqSRADLLAISLAVTSILTGLVWlsirpksitvvnpkgvecQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLLQIGMaaesgnsgeAVIVDASKLKQGSVYLGVMRSKAQRYLANLLlypgrselpflpsntq
Flexible Loop (DISEMBL)
meagtifysaipwkpkqpFPRNPSSFPRFIRASassqsqggyrgpKPSQDLVADWVMNNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGLVWLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLllypgrselpflpsntq
Low Complexity Region (SEG)
MEAGTIFYSAIPWKPKQpfprnpssfprfIRASASSQSQGGYRGPKPSQDLVADWVMNNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGLVWLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQ
Disordered region (IsUnstruct)
*****IFYSAIPW*************************************LVADWVMNNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVA********ADLLAISLAVTSILTGLVWLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPG************
Disordered Region (DISOPRED)
********SAIPWKPKQ**************************************VMNNDDAVRSLPIYVGGASLLAVLFNRTVSGIAP*********RADLLAISLAVTSILTGLVWL****************CQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSN**
Disordered Region (DISEMBL)
MEAGTIFYSAIPWKPKQPFPRNPSSFPRFIRA*************KPSQDLVADWVMNNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVA********ADLLAISLAVTSILTGLVWLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQ
Disordered Region (DISPRO)
****TIFYSAIPWKPKQPF**NPSSFP*F**************GPKPSQDLVADWVMNNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGLVWLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLP****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEAGTIFYSAIPWKPKQPFPRNPSSFPRFIRASASSQSQGGYRGPKPSQDLVADWVMNNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGLVWLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
255558330	336	conserved hypothetical protein [Ricinus	1.0	0.705	0.711	1e-89
51971242	242	hypothetical protein [Arabidopsis thalia	1.0	0.979	0.716	4e-89
42562815	297	cofactor assembly of complex C [Arabidop	1.0	0.797	0.716	6e-89
225424815	291	PREDICTED: uncharacterized protein LOC10	0.983	0.800	0.714	8e-89
297840573	298	hypothetical protein ARALYDRAFT_475325 [	1.0	0.795	0.713	1e-88
5080827	305	Hypothetical protein [Arabidopsis thalia	1.0	0.777	0.689	9e-87
449434863	300	PREDICTED: uncharacterized protein LOC10	0.987	0.78	0.703	8e-85
449523652	300	PREDICTED: uncharacterized LOC101208049	0.987	0.78	0.703	1e-84
110738156	218	hypothetical protein [Arabidopsis thalia	0.907	0.986	0.692	1e-76
357486363	276	hypothetical protein MTR_5g037050 [Medic	0.827	0.710	0.705	3e-74

>gi|255558330|ref|XP_002520192.1| conserved hypothetical protein [Ricinus communis] gi|223540684|gb|EEF42247.1| conserved hypothetical protein [Ricinus communis]

 Score =  334 bits (857), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 170/239 (71%), Positives = 194/239 (81%), Gaps = 2/239 (0%)

Query: 1   MEAGTIFYSAIPWKPKQPFP--RNPSSFPRFIRASASSQSQGGYRGPKPSQDLVADWVMN 58
           MEAGTI  ++I ++    FP  R   +   F+RAS+   SQG YRGPKP +DLVADWV N
Sbjct: 41  MEAGTILPTSILFRSPFHFPISRPLQNLRFFVRASSDLNSQGKYRGPKPKRDLVADWVSN 100

Query: 59  NDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGLVW 118
           NDD VRSLPIYVGGASLLAVLFNR  SGIAPVADASSSQSRADLL + LAVT+IL GL+W
Sbjct: 101 NDDTVRSLPIYVGGASLLAVLFNRAASGIAPVADASSSQSRADLLTLGLAVTNILAGLIW 160

Query: 119 LSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLLQ 178
           LSI+PKSI++VNP+GVECQ+I S+LPD VVSELLWAWESLSA TCCRSLVVVYD +  LQ
Sbjct: 161 LSIKPKSISLVNPQGVECQIILSHLPDYVVSELLWAWESLSAATCCRSLVVVYDCVCFLQ 220

Query: 179 IGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQ 237
           IGMAAES N GEA+ VDA+KL QGS+   + +S AQ YLANL LYPGR+ELPFLP NTQ
Sbjct: 221 IGMAAESPNKGEALSVDAAKLMQGSLVQAIKKSGAQSYLANLSLYPGRTELPFLPLNTQ 279

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51971242|dbj|BAD44313.1| hypothetical protein [Arabidopsis thaliana] gi|51971329|dbj|BAD44329.1| hypothetical protein [Arabidopsis thaliana]

 Score =  333 bits (853), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 172/240 (71%), Positives = 192/240 (80%), Gaps = 3/240 (1%)

Query: 1   MEAGTIFYS-AIPWKPKQPFPRNPSSFPRFIRASASSQSQG--GYRGPKPSQDLVADWVM 57
           MEA  I     IPW   + F   P  FPRFIRAS+SS SQ    Y GPKP ++LVAD++ 
Sbjct: 1   MEARIILLRIQIPWSANRQFSHPPLDFPRFIRASSSSTSQKPKTYEGPKPRKNLVADFIS 60

Query: 58  NNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGLV 117
            NDD VRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLA+ LAVT++LTGLV
Sbjct: 61  KNDDLVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLALGLAVTNLLTGLV 120

Query: 118 WLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLL 177
           WLSIRPKSIT VNPKGVEC+++ S LP S+VSELLWAWESL   TCC+SLV+VY+GI L+
Sbjct: 121 WLSIRPKSITPVNPKGVECKVVESDLPASMVSELLWAWESLKVATCCKSLVIVYNGICLI 180

Query: 178 QIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQ 237
           QIGM AES    + VIV   KL QGSVY GVM+SKAQ YLANL LYPGRSELPFLP+NTQ
Sbjct: 181 QIGMVAESPEDKKTVIVKTDKLMQGSVYRGVMKSKAQSYLANLSLYPGRSELPFLPANTQ 240

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42562815|ref|NP_176193.2| cofactor assembly of complex C [Arabidopsis thaliana] gi|42571921|ref|NP_974051.1| cofactor assembly of complex C [Arabidopsis thaliana] gi|34146872|gb|AAQ62444.1| At1g59840 [Arabidopsis thaliana] gi|51968666|dbj|BAD43025.1| hypothetical protein [Arabidopsis thaliana] gi|51968878|dbj|BAD43131.1| hypothetical protein [Arabidopsis thaliana] gi|62320426|dbj|BAD94887.1| hypothetical protein [Arabidopsis thaliana] gi|332195505|gb|AEE33626.1| cofactor assembly of complex C [Arabidopsis thaliana] gi|332195506|gb|AEE33627.1| cofactor assembly of complex C [Arabidopsis thaliana]

 Score =  332 bits (852), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 172/240 (71%), Positives = 192/240 (80%), Gaps = 3/240 (1%)

Query: 1   MEAGTIFYS-AIPWKPKQPFPRNPSSFPRFIRASASSQSQG--GYRGPKPSQDLVADWVM 57
           MEA  I     IPW   + F   P  FPRFIRAS+SS SQ    Y GPKP ++LVAD++ 
Sbjct: 1   MEARIILLRIQIPWSANRQFSHPPLDFPRFIRASSSSTSQKPKTYEGPKPRKNLVADFIS 60

Query: 58  NNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGLV 117
            NDD VRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLA+ LAVT++LTGLV
Sbjct: 61  KNDDLVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLALGLAVTNLLTGLV 120

Query: 118 WLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLL 177
           WLSIRPKSIT VNPKGVEC+++ S LP S+VSELLWAWESL   TCC+SLV+VY+GI L+
Sbjct: 121 WLSIRPKSITPVNPKGVECKVVESDLPASMVSELLWAWESLKVATCCKSLVIVYNGICLI 180

Query: 178 QIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQ 237
           QIGM AES    + VIV   KL QGSVY GVM+SKAQ YLANL LYPGRSELPFLP+NTQ
Sbjct: 181 QIGMVAESPEDKKTVIVKTDKLMQGSVYRGVMKSKAQSYLANLSLYPGRSELPFLPANTQ 240

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424815|ref|XP_002267988.1| PREDICTED: uncharacterized protein LOC100255235 [Vitis vinifera] gi|296086476|emb|CBI32065.3| unnamed protein product [Vitis vinifera]

 Score =  332 bits (851), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 170/238 (71%), Positives = 196/238 (82%), Gaps = 5/238 (2%)

Query: 1   MEAGTIFYSAIPWKPKQPFPRNPSSFPRFIRASASSQSQGGYRGPKPSQDLVADWVMNND 60
           MEAG +  + IPW+PK     +P +FPRF+RAS  S+SQG YRGPKP +D +ADWV NND
Sbjct: 1   MEAGRLLRTPIPWRPK--LAPSPPTFPRFVRAS--SKSQGRYRGPKPRRDWLADWVSNND 56

Query: 61  DAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGLVWLS 120
           D VRSLPIYVGG SLL+VLFNRT+SGIAPVADASSSQSRADLL + LAVT+IL GLVWLS
Sbjct: 57  DTVRSLPIYVGGVSLLSVLFNRTISGIAPVADASSSQSRADLLTLGLAVTNILAGLVWLS 116

Query: 121 IRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLLQIG 180
           IRPKSI+VVNP+GVE + I   +  S+VSELLW WESLS VTCCRSLV++YD I +LQIG
Sbjct: 117 IRPKSISVVNPQGVESRRIYPNIAASLVSELLWVWESLSVVTCCRSLVILYDSICILQIG 176

Query: 181 MAAE-SGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQ 237
           MAAE S   GEA+ VDA+KL QGS+Y GVM+S AQ YLANL LYPG+SELPFLPSNTQ
Sbjct: 177 MAAESSAGDGEAMAVDATKLMQGSLYQGVMKSGAQSYLANLSLYPGKSELPFLPSNTQ 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297840573|ref|XP_002888168.1| hypothetical protein ARALYDRAFT_475325 [Arabidopsis lyrata subsp. lyrata] gi|297334009|gb|EFH64427.1| hypothetical protein ARALYDRAFT_475325 [Arabidopsis lyrata subsp. lyrata]

 Score =  332 bits (850), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 172/241 (71%), Positives = 194/241 (80%), Gaps = 4/241 (1%)

Query: 1   MEAGTIFYSAIPWKPKQPFPRNPSSFPRFIRA----SASSQSQGGYRGPKPSQDLVADWV 56
           MEA  I    IPW P + F R PS FPRFIRA    S++SQ    YRGPKPS++LVAD++
Sbjct: 1   MEARIILQIQIPWNPNRKFSRTPSDFPRFIRAYSSSSSTSQKPRSYRGPKPSKNLVADFI 60

Query: 57  MNNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGL 116
             NDD VRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLA+ LAVT++LTGL
Sbjct: 61  SKNDDLVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLALGLAVTNLLTGL 120

Query: 117 VWLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYL 176
           VWLSIRPKSIT V P GVE +++ S LP SVVSELLWAWES    TCC+SLV+VY+GI L
Sbjct: 121 VWLSIRPKSITPVQPDGVEWKVVESGLPASVVSELLWAWESFKVATCCKSLVIVYNGICL 180

Query: 177 LQIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNT 236
           +QIGM AES    +AV+V+  KL QGSVY GVM+SKAQ YLANL LYPGRSELPFLP+NT
Sbjct: 181 IQIGMVAESPEDKKAVVVNTDKLMQGSVYRGVMKSKAQSYLANLSLYPGRSELPFLPANT 240

Query: 237 Q 237
           Q
Sbjct: 241 Q 241

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5080827|gb|AAD39336.1|AC007258_25 Hypothetical protein [Arabidopsis thaliana]

 Score =  325 bits (833), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 171/248 (68%), Positives = 193/248 (77%), Gaps = 11/248 (4%)

Query: 1   MEAGTIFYS-AIPWKPKQPFPRNPSSFPRFIRASASSQSQG--GYRGPKPSQDLVADWVM 57
           MEA  I     IPW   + F   P  FPRFIRAS+SS SQ    Y GPKP ++LVAD++ 
Sbjct: 1   MEARIILLRIQIPWSANRQFSHPPLDFPRFIRASSSSTSQKPKTYEGPKPRKNLVADFIS 60

Query: 58  NNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGLV 117
            NDD VRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLA+ LAVT++LTGLV
Sbjct: 61  KNDDLVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLALGLAVTNLLTGLV 120

Query: 118 WLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLL 177
           WLSIRPKSIT VNPKGVEC+++ S LP S+VSELLWAWESL   TCC+SLV+VY+GI L+
Sbjct: 121 WLSIRPKSITPVNPKGVECKVVESDLPASMVSELLWAWESLKVATCCKSLVIVYNGICLI 180

Query: 178 QIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQR--------YLANLLLYPGRSEL 229
           QIGM AES    + VIV   KL QGSVY GVM+SKA++        YLANL LYPGRSEL
Sbjct: 181 QIGMVAESPEDKKTVIVKTDKLMQGSVYRGVMKSKARKNNDCLSESYLANLSLYPGRSEL 240

Query: 230 PFLPSNTQ 237
           PFLP+NTQ
Sbjct: 241 PFLPANTQ 248

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434863|ref|XP_004135215.1| PREDICTED: uncharacterized protein LOC101208049 [Cucumis sativus]

 Score =  319 bits (817), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 171/243 (70%), Positives = 189/243 (77%), Gaps = 9/243 (3%)

Query: 1   MEAGTIF-YSAIPWKPKQPFPRNPSS----FPRFIRASASSQSQGGYRGPKPSQDLVADW 55
           MEAG  F  ++IPW     F R  SS    FP  +RAS SS SQ  YRGPKPS +LVADW
Sbjct: 1   MEAGIFFPLTSIPWTFN--FKRTHSSLRPSFPLIVRAS-SSTSQRSYRGPKPSTNLVADW 57

Query: 56  VMNNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTG 115
           V NNDD VRSLPIYVGG SLL VLFNR VSGIAPVADASSSQSRADLL + LAVT++L G
Sbjct: 58  VSNNDDTVRSLPIYVGGISLLIVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAG 117

Query: 116 LVWLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIY 175
           LVWLSIRPKSIT VNP GVE + ICS LPD V SELLW W+SLS VTCCRSLVVVYDG  
Sbjct: 118 LVWLSIRPKSITPVNPLGVENERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGTC 177

Query: 176 LLQIGMAAESGN-SGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPS 234
           + Q+G AAES   +GEA  V+A KL QGS+Y GV++S+AQ YLANL LYPG+SELPFLPS
Sbjct: 178 IFQVGFAAESAEGNGEAEHVEAGKLMQGSLYKGVLKSQAQSYLANLSLYPGKSELPFLPS 237

Query: 235 NTQ 237
           NTQ
Sbjct: 238 NTQ 240

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523652|ref|XP_004168837.1| PREDICTED: uncharacterized LOC101208049 [Cucumis sativus]

 Score =  318 bits (814), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 171/243 (70%), Positives = 189/243 (77%), Gaps = 9/243 (3%)

Query: 1   MEAGTIF-YSAIPWKPKQPFPRNPSS----FPRFIRASASSQSQGGYRGPKPSQDLVADW 55
           MEAG  F  ++IPW     F R  SS    FP  +RAS SS SQ  YRGPKPS +LVADW
Sbjct: 1   MEAGIFFPLTSIPWTFN--FKRTHSSLRPSFPLIVRAS-SSTSQRSYRGPKPSTNLVADW 57

Query: 56  VMNNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTG 115
           V NNDD VRSLPIYVGG SLL VLFNR VSGIAPVADASSSQSRADLL + LAVT++L G
Sbjct: 58  VSNNDDTVRSLPIYVGGISLLIVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAG 117

Query: 116 LVWLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIY 175
           LVWLSIRPKSIT VNP GVE + ICS LPD V SELLW W+SLS VTCCRSLVVVYDG  
Sbjct: 118 LVWLSIRPKSITPVNPLGVENERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKC 177

Query: 176 LLQIGMAAESGN-SGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPS 234
           + Q+G AAES   +GEA  V+A KL QGS+Y GV++S+AQ YLANL LYPG+SELPFLPS
Sbjct: 178 IFQVGFAAESAEGNGEAEHVEAGKLMQGSLYKGVLKSQAQSYLANLSLYPGKSELPFLPS 237

Query: 235 NTQ 237
           NTQ
Sbjct: 238 NTQ 240

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110738156|dbj|BAF01009.1| hypothetical protein [Arabidopsis thaliana]

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 151/218 (69%), Positives = 172/218 (78%), Gaps = 3/218 (1%)

Query: 1   MEAGTIFYS-AIPWKPKQPFPRNPSSFPRFIRASASSQSQG--GYRGPKPSQDLVADWVM 57
           MEA  I     IPW   + F   P  FPRFIRAS+SS SQ    Y GPKP ++LVAD++ 
Sbjct: 1   MEARIILLRIQIPWSANRQFSHPPLDFPRFIRASSSSTSQKPKTYEGPKPRKNLVADFIS 60

Query: 58  NNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGLV 117
            NDD VRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLA+ LAVT++LTGLV
Sbjct: 61  KNDDLVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLALGLAVTNLLTGLV 120

Query: 118 WLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLL 177
           WLSIRPKSIT VNPKGVEC+++ S LP S+VSELLWAWESL   TCC+SLV+VY+GI L+
Sbjct: 121 WLSIRPKSITPVNPKGVECKVVESDLPASMVSELLWAWESLKVATCCKSLVIVYNGICLI 180

Query: 178 QIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQR 215
           QIGM AES    + VIV   KL QGSVY GVM+SKA++
Sbjct: 181 QIGMVAESPEDKKTVIVKTDKLMQGSVYRGVMKSKARK 218

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486363|ref|XP_003613469.1| hypothetical protein MTR_5g037050 [Medicago truncatula] gi|355514804|gb|AES96427.1| hypothetical protein MTR_5g037050 [Medicago truncatula]

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 139/197 (70%), Positives = 160/197 (81%), Gaps = 1/197 (0%)

Query: 42  YRGPKPSQDLVADWVMNNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRAD 101
           +R P P +D + DWV  NDD VR LPIYVG ASL AVLFNRT+SGIAPVADA SSQSRAD
Sbjct: 52  FRTPNPKRDFLPDWVSQNDDVVRPLPIYVGAASLFAVLFNRTISGIAPVADAGSSQSRAD 111

Query: 102 LLAISLAVTSILTGLVWLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAV 161
           LL + LAVT+IL GLVWLSI+PKSI+VVNP+GVEC+ +C+ LPD  ++EL+WAWESLS V
Sbjct: 112 LLTLGLAVTNILAGLVWLSIKPKSISVVNPQGVECKKLCTALPDVALTELVWAWESLSDV 171

Query: 162 TCCRSLVVVYDGIYLLQIGMAAESG-NSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANL 220
           TCCRSLV+VY+   +LQ G AAES   +GEAV VD  KL QGSVY GVM+S  Q YLANL
Sbjct: 172 TCCRSLVIVYESNCVLQFGFAAESSPGNGEAVSVDTDKLMQGSVYQGVMKSGTQSYLANL 231

Query: 221 LLYPGRSELPFLPSNTQ 237
            LYPG+SELPFLPSNTQ
Sbjct: 232 SLYPGKSELPFLPSNTQ 248

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
TAIR|locus:2025896	297	CCB4 "AT1G59840" [Arabidopsis	1.0	0.797	0.691	5.4e-79

TAIR|locus:2025896 CCB4 "AT1G59840" [Arabidopsis thaliana (taxid:3702)]

 Score = 794 (284.6 bits), Expect = 5.4e-79, P = 5.4e-79
 Identities = 166/240 (69%), Positives = 186/240 (77%)

Query:     1 MEAGTIFYSA-IPWKPKQXXXXXXXXXXXXIRASASSQSQGG--YRGPKPSQDLVADWVM 57
             MEA  I     IPW   +            IRAS+SS SQ    Y GPKP ++LVAD++ 
Sbjct:     1 MEARIILLRIQIPWSANRQFSHPPLDFPRFIRASSSSTSQKPKTYEGPKPRKNLVADFIS 60

Query:    58 NNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGLV 117
              NDD VRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLA+ LAVT++LTGLV
Sbjct:    61 KNDDLVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLALGLAVTNLLTGLV 120

Query:   118 WLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLL 177
             WLSIRPKSIT VNPKGVEC+++ S LP S+VSELLWAWESL   TCC+SLV+VY+GI L+
Sbjct:   121 WLSIRPKSITPVNPKGVECKVVESDLPASMVSELLWAWESLKVATCCKSLVIVYNGICLI 180

Query:   178 QIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQ 237
             QIGM AES    + VIV   KL QGSVY GVM+SKAQ YLANL LYPGRSELPFLP+NTQ
Sbjct:   181 QIGMVAESPEDKKTVIVKTDKLMQGSVYRGVMKSKAQSYLANLSLYPGRSELPFLPANTQ 240


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.386    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      237       225   0.00077  113 3  11 22  0.40    33
                                                     32  0.41    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  581 (62 KB)
  Total size of DFA:  169 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.79u 0.18s 17.97t   Elapsed:  00:00:01
  Total cpu time:  17.79u 0.18s 17.97t   Elapsed:  00:00:01
  Start:  Mon May 20 16:12:29 2013   End:  Mon May 20 16:12:30 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010190 "cytochrome b6f complex assembly" evidence=IMP

GO:0010207 "photosystem II assembly" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00028931001	SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (291 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00037960001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (267 aa)			•	•			•		0.682
	GSVIVG00007397001	SubName- Full=Chromosome chr16 scaffold_189, whole genome shotgun sequence; (251 aa)			•				•		0.616
	GSVIVG00022834001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (353 aa)			•	•					0.599
	PsbP2	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (238 aa)			•	•					0.586
	GSVIVG00036435001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (557 aa)	•		•	•					0.572
	GSVIVG00023239001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (219 aa)			•	•					0.571
	GSVIVG00018549001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (235 aa)			•	•					0.566
	GSVIVG00037015001	SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (198 aa)			•	•					0.553
	GSVIVG00005655001	SubName- Full=Putative uncharacterized protein (Chromosome undetermined scaffold_155, whole gen [...] (254 aa)			•	•					0.541
	GSVIVG00023910001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (216 aa)			•	•					0.534

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	237
pfam11152	195	pfam11152, DUF2930, Protein of unknown function (D	6e-47

>gnl|CDD|221004 pfam11152, DUF2930, Protein of unknown function (DUF2930)

 Score =  153 bits (390), Expect = 6e-47
 Identities = 58/172 (33%), Positives = 85/172 (49%), Gaps = 16/172 (9%)

Query: 66  LPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGLVWLSIRPKS 125
           LP+  G    L +L NR  +     AD + SQSRAD+L + LA   IL GL+W   +P+S
Sbjct: 1   LPLIAGLLGGLLLLLNRLST-----ADITPSQSRADVLGLLLAAGLILVGLLWTRAQPRS 55

Query: 126 ITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLLQIGMAAES 185
              V+ +G +   +   L +++  EL WA   L   T   S++V +DG  LL+ G+    
Sbjct: 56  PEAVDLEGEQGFELSPDLSEALKEELAWASHLLLTATPAASVLVYWDGQVLLRRGILGP- 114

Query: 186 GNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQ 237
                       K + G +    + ++   YL NL LYPGR E  +LP NTQ
Sbjct: 115 ----------PVKFEPGEICKRALETQQLVYLVNLKLYPGRIEFDYLPPNTQ 156

This family of proteins has no known function. Length = 195

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	237
PF11152	195	DUF2930: Protein of unknown function (DUF2930); In	100.0

>PF11152 DUF2930: Protein of unknown function (DUF2930); InterPro: IPR021325 This family of proteins has no known function

Probab=100.00  E-value=3e-63  Score=430.63  Aligned_cols=156  Identities=42%  Similarity=0.615  Sum_probs=151.3

Q ss_pred             hhHHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhhhhhcccCCCcccCCCCccceEecCCCCH
Q 026542           66 LPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGLVWLSIRPKSITVVNPKGVECQMICSYLPD  145 (237)
Q Consensus        66 LPl~vG~l~~~llL~Nr~ls~iapva~~t~sQsRAdVLg~~LS~~LiL~GllW~~iqP~~~~~V~L~G~e~f~l~~~Lsd  145 (237)
                      ||+++|+++++++++||+++     +++||||+||||||++||+++||+|++|+++||+++++|+|+|+|+|++++||||
T Consensus         1 LPl~vG~l~~~lll~N~~~~-----~~~t~sq~RaevLg~~ls~~liL~g~lw~~l~p~~~~~v~L~G~~~f~l~~~L~~   75 (195)
T PF11152_consen    1 LPLIVGLLGGSLLLLNRLSG-----ADATPSQSRAEVLGLILSAVLILTGLLWQRLKPRSPEAVDLPGEQGFELSPDLSD   75 (195)
T ss_pred             CceEehHHHHHHHHhhhccc-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCCCCccceEECCCCCH
Confidence            69999999999999999653     3999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhccccEEEEEECCEEEEEEeeccCCCCCCcceeecccccchhHHHHHHHhcCCeeeeeccccCCC
Q 026542          146 SVVSELLWAWESLSAVTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPG  225 (237)
Q Consensus       146 ~~k~ELAWaS~~LLtnT~a~SvlV~~~G~vlLrRGi~~~~~~~~~a~~vd~~~~~pG~I~~r~l~~~~~iYLvnL~LyPG  225 (237)
                      ++|+||||+||+|||||+|+||+|||||+++||||+++++           ++|+||+||+|+||+++++||+|+++|||
T Consensus        76 ~~k~ELAWas~~LLt~T~a~svlV~~~g~~llrrG~~~~~-----------~~~~~g~i~~~~~~~~~~~yL~nl~lyPG  144 (195)
T PF11152_consen   76 AAKEELAWASYALLTNTNARSVLVYYDGRVLLRRGILGSP-----------SKFKPGPICQRAMESGKLIYLVNLKLYPG  144 (195)
T ss_pred             HHHHHHHHHHHHHHhhCCceEEEEEECCEEEEEeeccCCC-----------CCcchHHHHHHHHhcCCceeccccccCCC
Confidence            9999999999999999999999999999999999999864           48999999999999999999999999999


Q ss_pred             CCCCCCCCCCCC
Q 026542          226 RSELPFLPSNTQ  237 (237)
Q Consensus       226 R~EFd~lP~Ntq  237 (237)
                      |+||||||+|||
T Consensus       145 r~Ef~~lP~ntq  156 (195)
T PF11152_consen  145 RVEFDYLPENTQ  156 (195)
T ss_pred             chhhhhcCCCCc
Confidence            999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00