Citrus Sinensis ID: 026546

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
Protein Sequence
MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHcccccccccEEEEEcccccccccHHHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHcccEEEccccccccccccccccEEEEccccccHHHHHHHHcccccEEEcccccHHHHHHHHHHHHHcccEEEEEcccccccEEEEccccccEEEEEcHHHHHHHHccccccEEEccHHHHHHHHHHHHHHHccccccccccEEEEEccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHccccccccccEEEEcccccccccHHHHHHHHHHHHHHHccccEEEEEEEEEcHHHHHHHHHcccEEEEccccHHHHHccccccEEEEEcccccHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHHcccEEEEEEccccccEEccccccccEEEEccHHHHHHHHHHHEHHccccccccHHHHHHHHHHHcccccccccccHEHHcHcHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITneiihnptvNKRLEEMavqnipveegkkqfdvvnkgdvvvLPAFGAAVEEMVTLNnknvqivdttcpwvSKVWTSVekhkkgdytsiihgkysheetvataSFAGKYIIVKNMKEAEYVCDYIlggelngssstKEAFLEKFKKAVskgfdpdvdlVKVGIANQTTMLKGETEEIG
Flexible Loop (DISEMBL)
MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPveegkkqfdvvNKGDVVVLPAFGAAVEEMVTLnnknvqivdttcPWVSKVWTsvekhkkgdytsiihgkysheeTVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAvskgfdpdvdlVKVGianqttmlkgeteeig
Low Complexity Region (SEG)
MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG
Disordered region (IsUnstruct)
********IIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNG******AFLEKFKKAVSKGFDPDVDLVKVGIAN*************
Disordered Region (DISOPRED)
****YTS***KKLKE*GFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEI*
Disordered Region (DISEMBL)
MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG
Disordered Region (DISPRO)
***EYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEE**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	237	2.2.26 [Sep-21-2011]
Q6AVG6	459	4-hydroxy-3-methylbut-2-e	yes	no	1.0	0.516	0.852	1e-118
Q94B35	466	4-hydroxy-3-methylbut-2-e	yes	no	1.0	0.508	0.810	1e-115
B1WTZ2	402	4-hydroxy-3-methylbut-2-e	yes	no	0.974	0.574	0.675	5e-92
Q3M8X6	402	4-hydroxy-3-methylbut-2-e	yes	no	0.974	0.574	0.641	2e-90
P58674	402	4-hydroxy-3-methylbut-2-e	yes	no	0.974	0.574	0.641	2e-90
B7KEG3	402	4-hydroxy-3-methylbut-2-e	yes	no	0.974	0.574	0.632	1e-89
B0JVA7	402	4-hydroxy-3-methylbut-2-e	yes	no	0.974	0.574	0.649	3e-89
Q5N249	398	4-hydroxy-3-methylbut-2-e	yes	no	0.974	0.580	0.611	5e-89
Q31S64	398	4-hydroxy-3-methylbut-2-e	yes	no	0.974	0.580	0.611	5e-89
B8HWD3	405	4-hydroxy-3-methylbut-2-e	yes	no	0.962	0.562	0.646	2e-88

>sp|Q6AVG6|ISPH_ORYSJ 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=ISPH PE=2 SV=1

 Score =  424 bits (1089), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/237 (85%), Positives = 217/237 (91%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           M+QEYTSD+IK LKENG ++TWG V VKLAE+YGFCWGVERAVQIAYEARKQFP+++IW+
Sbjct: 80  MSQEYTSDVIKTLKENGNQHTWGPVTVKLAEAYGFCWGVERAVQIAYEARKQFPDDRIWL 139

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNPTVNKRLE+M VQNIPV+ G K FDVV +GDVVVLPAFGAAVEEM TLN K V
Sbjct: 140 TNEIIHNPTVNKRLEDMGVQNIPVDAGIKDFDVVEQGDVVVLPAFGAAVEEMYTLNEKKV 199

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           QIVDTTCPWVSKVW  VEKHKKGDYTSIIHGKYSHEETVATASFAG YIIVKN+ EA YV
Sbjct: 200 QIVDTTCPWVSKVWNMVEKHKKGDYTSIIHGKYSHEETVATASFAGTYIIVKNIAEASYV 259

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG 237
           CDYILGG+L+GSSSTKE FLEKFK AVS GFDPDVDLVKVGIANQTTMLKGETEEIG
Sbjct: 260 CDYILGGQLDGSSSTKEEFLEKFKNAVSPGFDPDVDLVKVGIANQTTMLKGETEEIG 316

Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Is essential for chloroplast development.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 1EC: .EC: 1EC: 7EC: .EC: 1EC: .EC: 2

>sp|Q94B35|ISPH_ARATH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=ISPH PE=2 SV=1

 Score =  413 bits (1061), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 192/237 (81%), Positives = 218/237 (91%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           MN+EYTSDI++ LK NG+ Y+WG+V VKLA++YGFCWGVERAVQIAYEARKQFPEE++WI
Sbjct: 87  MNREYTSDILETLKTNGYTYSWGDVTVKLAKAYGFCWGVERAVQIAYEARKQFPEERLWI 146

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNPTVNKRLE+M V+ IPVE+ KKQFDVV K DVV+LPAFGA V+EM  LN+K V
Sbjct: 147 TNEIIHNPTVNKRLEDMDVKIIPVEDSKKQFDVVEKDDVVILPAFGAGVDEMYVLNDKKV 206

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           QIVDTTCPWV+KVW +VEKHKKG+YTS+IHGKY+HEET+ATASFAGKYIIVKNMKEA YV
Sbjct: 207 QIVDTTCPWVTKVWNTVEKHKKGEYTSVIHGKYNHEETIATASFAGKYIIVKNMKEANYV 266

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG 237
           CDYILGG+ +GSSSTKE F+EKFK A+SKGFDPD DLVKVGIANQTTMLKGETEEIG
Sbjct: 267 CDYILGGQYDGSSSTKEEFMEKFKYAISKGFDPDNDLVKVGIANQTTMLKGETEEIG 323

Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Is essential for chloroplast development.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 1

EC: .

EC: 2

>sp|B1WTZ2|ISPH_CYAA5 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain ATCC 51142) GN=ispH PE=3 SV=1

 Score =  337 bits (863), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 160/237 (67%), Positives = 190/237 (80%), Gaps = 6/237 (2%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           MN EY S +I+K++EN +++  G+V +KLAE++GFCWGVERAV +AYE R+ FP+EKIWI
Sbjct: 31  MNTEYQSSLIQKIRENNYQWQEGDVTIKLAEAFGFCWGVERAVAMAYETRQHFPQEKIWI 90

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNP+VN+RL EM V  I V  G K F VV  GDVV+LPAFGA+V EM  LN+K  
Sbjct: 91  TNEIIHNPSVNQRLLEMNVGFIEVINGSKDFSVVEAGDVVILPAFGASVTEMQLLNDKGC 150

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
            IVDTTCPWVSKVW SVEKHKK DYTSIIHGKY HEETVAT+SFAG Y++V N+KEA+YV
Sbjct: 151 TIVDTTCPWVSKVWNSVEKHKKKDYTSIIHGKYKHEETVATSSFAGTYLVVLNLKEAQYV 210

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG 237
           CDYIL G        K+ FLEKFK A S+GFDPD DL+++GIANQTTMLK ETE+IG
Sbjct: 211 CDYILNG------GNKDEFLEKFKNAHSEGFDPDKDLIRLGIANQTTMLKSETEQIG 261

Converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP).

Cyanothece sp. (strain ATCC 51142) (taxid: 43989)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 1

EC: .

EC: 2

>sp|Q3M8X6|ISPH_ANAVT 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ispH PE=3 SV=1

 Score =  332 bits (850), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 152/237 (64%), Positives = 188/237 (79%), Gaps = 6/237 (2%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           +  EY S +I+++++  +    G+V ++LA+++GFCWGVERAV +AYE RK FP E+IWI
Sbjct: 31  LQSEYQSSLIQEIRDRNYTLQRGDVTIRLAQAFGFCWGVERAVAMAYETRKHFPTERIWI 90

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNP+VN+R++EM V  IPVE G K F VV   DVV+LPAFGA+V+EM  L+ K  
Sbjct: 91  TNEIIHNPSVNQRMQEMQVGFIPVEAGNKDFSVVGNNDVVILPAFGASVQEMQLLSEKGC 150

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           +IVDTTCPWVSKVW +VEKHKKGD+TSIIHGKY HEET+AT+SFAGKY+IV N+KEA+YV
Sbjct: 151 KIVDTTCPWVSKVWNTVEKHKKGDHTSIIHGKYKHEETIATSSFAGKYLIVLNLKEAQYV 210

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG 237
            DYIL G        +E FL+KF KA S GFDPD DL +VGIANQTTMLKGETE+IG
Sbjct: 211 ADYILHGR------NREEFLQKFAKACSAGFDPDKDLERVGIANQTTMLKGETEQIG 261

Converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP).

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 1

EC: .

EC: 2

>sp|P58674|ISPH_NOSS1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=ispH PE=3 SV=1

 Score =  332 bits (850), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 152/237 (64%), Positives = 188/237 (79%), Gaps = 6/237 (2%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           +  EY S +I+++++  +    G+V ++LA+++GFCWGVERAV +AYE RK FP E+IWI
Sbjct: 31  LQSEYQSSLIQEIRDRNYTLQRGDVTIRLAQAFGFCWGVERAVAMAYETRKHFPTERIWI 90

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNP+VN+R++EM V  IPVE G K F VV   DVV+LPAFGA+V+EM  L+ K  
Sbjct: 91  TNEIIHNPSVNQRMQEMQVGFIPVEAGNKDFSVVGNNDVVILPAFGASVQEMQLLSEKGC 150

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           +IVDTTCPWVSKVW +VEKHKKGD+TSIIHGKY HEET+AT+SFAGKY+IV N+KEA+YV
Sbjct: 151 KIVDTTCPWVSKVWNTVEKHKKGDHTSIIHGKYKHEETIATSSFAGKYLIVLNLKEAQYV 210

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG 237
            DYIL G        +E FL+KF KA S GFDPD DL +VGIANQTTMLKGETE+IG
Sbjct: 211 ADYILHG------GNREEFLQKFAKACSAGFDPDRDLERVGIANQTTMLKGETEQIG 261

Converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP).

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 1

EC: .

EC: 2

>sp|B7KEG3|ISPH_CYAP7 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 7424) GN=ispH PE=3 SV=1

 Score =  328 bits (842), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 150/237 (63%), Positives = 189/237 (79%), Gaps = 6/237 (2%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           MN EY S +I++++ N +  T G+V ++LAE++GFCWGVERAV ++YE R+ FP ++IW+
Sbjct: 31  MNSEYQSSLIQEIRNNNYRLTQGDVTIRLAEAFGFCWGVERAVAMSYETRQHFPNQRIWL 90

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNE+IHNP+VN+RL +M V+ IPV E +K F VV + DVV+LPAFGA+V EM  LN+K  
Sbjct: 91  TNEVIHNPSVNQRLRDMKVEFIPVIEDQKDFSVVERDDVVILPAFGASVTEMQLLNDKGC 150

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
            IVDTTCPWV+KVW SVEKHKK +YTSIIHGKY HEETVAT+SFAG Y++V NM++A+YV
Sbjct: 151 TIVDTTCPWVAKVWNSVEKHKKRNYTSIIHGKYKHEETVATSSFAGTYLVVLNMEQAKYV 210

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG 237
           C+YIL G        K+ FL KFKKA S+GFDPD DL +VGIANQTTMLK ETEEIG
Sbjct: 211 CNYILNG------GDKQEFLAKFKKAYSEGFDPDTDLERVGIANQTTMLKSETEEIG 261

Converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP).

Cyanothece sp. (strain PCC 7424) (taxid: 65393)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 1

EC: .

EC: 2

>sp|B0JVA7|ISPH_MICAN 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Microcystis aeruginosa (strain NIES-843) GN=ispH PE=3 SV=1

 Score =  328 bits (840), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 154/237 (64%), Positives = 185/237 (78%), Gaps = 6/237 (2%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           M  EY SD+I++++EN +    G+V + LA+++GFCWGVERAV +AYE R+ FP+E+IWI
Sbjct: 31  MTNEYQSDLIQEIRENNYRLQRGDVTIYLAQAFGFCWGVERAVAMAYETRQHFPQERIWI 90

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNP+VN+RL  MAV  IPVE G+K F VV  GDVV+LPAFGA+V EM  LN+K  
Sbjct: 91  TNEIIHNPSVNQRLRSMAVGFIPVENGQKDFTVVESGDVVILPAFGASVSEMQILNDKGC 150

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
            IVDTTCPWVSKVW SVEKHKK D+TSIIHGKY+HEET+AT+SFAG Y+IV N+ +A YV
Sbjct: 151 MIVDTTCPWVSKVWNSVEKHKKSDHTSIIHGKYNHEETIATSSFAGTYLIVLNLDQANYV 210

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG 237
            +YIL G        K  FLEKFK A S+GFDPD DL  +GIANQTTMLK ETEEIG
Sbjct: 211 ANYILHG------GDKNEFLEKFKNAHSQGFDPDRDLDYIGIANQTTMLKSETEEIG 261

Converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP).

Microcystis aeruginosa (strain NIES-843) (taxid: 449447)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 1

EC: .

EC: 2

>sp|Q5N249|ISPH_SYNP6 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ispH PE=3 SV=1

 Score =  327 bits (837), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 145/237 (61%), Positives = 187/237 (78%), Gaps = 6/237 (2%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           +   Y SD+I+ L++NG+    G + ++LAE++GFCWGVERAV IAYE R+ FP+E+IWI
Sbjct: 31  LESAYQSDLIQSLRQNGYRLQRGEITIRLAEAFGFCWGVERAVAIAYETRQHFPQERIWI 90

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNP+VN+ L EM+V+ IP E G+K F VV++GDVV+LPAFGA+V+EM  L+ K  
Sbjct: 91  TNEIIHNPSVNQHLREMSVEFIPCERGEKDFSVVDRGDVVILPAFGASVQEMQLLDEKGC 150

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
            IVDTTCPWVSKVW +VEKHK+G +TSIIHGKY+HEETVAT+SFA  Y++V N+++A+YV
Sbjct: 151 HIVDTTCPWVSKVWNTVEKHKRGAHTSIIHGKYNHEETVATSSFAETYLVVLNLEQAQYV 210

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG 237
           CDYIL G        ++ F+ +F KA S GFDPD DL ++GIANQTTMLK ETE IG
Sbjct: 211 CDYILNG------GDRDEFMTRFGKACSAGFDPDRDLERIGIANQTTMLKSETEAIG 261

Converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP).

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 1

EC: .

EC: 2

>sp|Q31S64|ISPH_SYNE7 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus elongatus (strain PCC 7942) GN=ispH PE=3 SV=1

 Score =  327 bits (837), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 145/237 (61%), Positives = 187/237 (78%), Gaps = 6/237 (2%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           +   Y SD+I+ L++NG+    G + ++LAE++GFCWGVERAV IAYE R+ FP+E+IWI
Sbjct: 31  LESAYQSDLIQSLRQNGYRLQRGEITIRLAEAFGFCWGVERAVAIAYETRQHFPQERIWI 90

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNP+VN+ L EM+V+ IP E G+K F VV++GDVV+LPAFGA+V+EM  L+ K  
Sbjct: 91  TNEIIHNPSVNQHLREMSVEFIPCERGEKDFSVVDRGDVVILPAFGASVQEMQLLDEKGC 150

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
            IVDTTCPWVSKVW +VEKHK+G +TSIIHGKY+HEETVAT+SFA  Y++V N+++A+YV
Sbjct: 151 HIVDTTCPWVSKVWNTVEKHKRGAHTSIIHGKYNHEETVATSSFAETYLVVLNLEQAQYV 210

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG 237
           CDYIL G        ++ F+ +F KA S GFDPD DL ++GIANQTTMLK ETE IG
Sbjct: 211 CDYILNG------GDRDEFMTRFGKACSAGFDPDRDLERIGIANQTTMLKSETEAIG 261

Converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP).

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 1

EC: .

EC: 2

>sp|B8HWD3|ISPH_CYAP4 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ispH PE=3 SV=1

 Score =  325 bits (832), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 152/235 (64%), Positives = 187/235 (79%), Gaps = 7/235 (2%)

Query: 4   EYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNE 63
           EY S +I++++ENG  +  G V ++LAE++GFCWGVERAV +AYE R+ FP E+IWITNE
Sbjct: 34  EYQSSLIQQIRENGNRFQRGEVTIQLAEAFGFCWGVERAVALAYETRQHFPTERIWITNE 93

Query: 64  IIHNPTVNKRLEEMAVQNIPV-EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQI 122
           IIHNP+VN+ L EM V+ IPV E+G+K F VV   DVV+LPAFGA+V+EM  LN+K  +I
Sbjct: 94  IIHNPSVNQNLREMQVEFIPVDEQGQKDFSVVAGEDVVILPAFGASVQEMQLLNDKGCKI 153

Query: 123 VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCD 182
           +DTTCPWVSKVW SVEKHKKG YTSIIHGKY HEET+AT+S+A  Y+IV ++KEAEYVC+
Sbjct: 154 MDTTCPWVSKVWNSVEKHKKGSYTSIIHGKYQHEETIATSSYAATYLIVLDLKEAEYVCN 213

Query: 183 YILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG 237
           YIL G        +E FL KF+ A S  FDPD DLV+VGIANQTTMLKGETE+IG
Sbjct: 214 YILNG------GDREEFLHKFRHAYSPDFDPDRDLVRVGIANQTTMLKGETEQIG 262

Converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP).

Cyanothece sp. (strain PCC 7425 / ATCC 29141) (taxid: 395961)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 1

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
224105455	460	predicted protein [Populus trichocarpa]	1.0	0.515	0.890	1e-124
255556135	466	4-hydroxy-3-methylbut-2-enyl diphosphate	1.0	0.508	0.890	1e-123
189017050	426	putative chloroplast 4-hydroxy-3-methylb	1.0	0.556	0.886	1e-123
356538819	462	PREDICTED: 4-hydroxy-3-methylbut-2-enyl	1.0	0.512	0.881	1e-122
405789874	371	putative 4-hydroxy-3-methylbut-2-enyl di	1.0	0.638	0.890	1e-121
164605002	462	4-hydroxy-3-methylbut-2-enyl diphosphate	1.0	0.512	0.886	1e-121
356545301	380	PREDICTED: 4-hydroxy-3-methylbut-2-enyl	1.0	0.623	0.881	1e-121
195928050	462	4-hydroxy-3-methylbut-2-enyl diphosphate	1.0	0.512	0.877	1e-121
114329246	459	hydroxymethylbutenyl diphosphate reducta	1.0	0.516	0.881	1e-121
255641515	380	unknown [Glycine max]	1.0	0.623	0.877	1e-120

>gi|224105455|ref|XP_002313816.1| predicted protein [Populus trichocarpa] gi|222850224|gb|EEE87771.1| predicted protein [Populus trichocarpa]

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 211/237 (89%), Positives = 230/237 (97%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           MN+EYTSDIIKKLKENG+EYTWGNV VKLAE+YGFCWGVERAVQIAYEARKQFP++KIWI
Sbjct: 81  MNREYTSDIIKKLKENGYEYTWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFPDDKIWI 140

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNPTVNKRLEEM V+N+PVEEGKKQF+VVN GDVV+LPAFGAAV+EM+TL++KNV
Sbjct: 141 TNEIIHNPTVNKRLEEMEVENVPVEEGKKQFEVVNGGDVVILPAFGAAVDEMLTLSSKNV 200

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           QIVDTTCPWVSKVWT+VEKHKKGDYTSIIHGKY+HEETVATASFAGKYIIVK+MKEA YV
Sbjct: 201 QIVDTTCPWVSKVWTTVEKHKKGDYTSIIHGKYAHEETVATASFAGKYIIVKDMKEAMYV 260

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG 237
           CDYILGGELNGSSST+E FLEKFK AVSKGFDPD DLVK+GIANQTTMLKGETE+IG
Sbjct: 261 CDYILGGELNGSSSTREEFLEKFKNAVSKGFDPDSDLVKLGIANQTTMLKGETEDIG 317

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556135|ref|XP_002519102.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative [Ricinus communis] gi|223541765|gb|EEF43313.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative [Ricinus communis]

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/237 (89%), Positives = 227/237 (95%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           M+QEYTSDIIK LKENG EYTWGNV VKLAE+YGFCWGVERAVQIAYEARKQFP+EKIWI
Sbjct: 87  MSQEYTSDIIKTLKENGNEYTWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWI 146

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNPTVNKRLEEM V+NIP+EEG+KQF+VVN GDVV+LPAFGAAV+EM+TL+NKNV
Sbjct: 147 TNEIIHNPTVNKRLEEMNVENIPLEEGRKQFEVVNNGDVVILPAFGAAVDEMLTLSNKNV 206

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           QIVDTTCPWVSKVW +VEKHKKGDYTSIIHGKYSHEET+ATASFAG YIIVKNMKEA YV
Sbjct: 207 QIVDTTCPWVSKVWNTVEKHKKGDYTSIIHGKYSHEETIATASFAGTYIIVKNMKEAMYV 266

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG 237
           CDYILGG+LNGSSSTKE FL+KFK AVSKGFDPDVDLVKVGIANQTTMLKGETE+IG
Sbjct: 267 CDYILGGQLNGSSSTKEEFLKKFKNAVSKGFDPDVDLVKVGIANQTTMLKGETEDIG 323

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|189017050|gb|ACD70402.1| putative chloroplast 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [Populus trichocarpa]

 Score =  445 bits (1145), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/237 (88%), Positives = 229/237 (96%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           MN+EYTSDIIKKLKENG+EY WGNV VKLAE+YGFCWGVERAVQIAYEARKQFP++KIWI
Sbjct: 47  MNREYTSDIIKKLKENGYEYAWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFPDDKIWI 106

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNPTVNKRLEEM V+N+PVEEGKKQF+VVN GDVV+LPAFGAAV+EM+TL++KNV
Sbjct: 107 TNEIIHNPTVNKRLEEMEVENVPVEEGKKQFEVVNGGDVVILPAFGAAVDEMLTLSSKNV 166

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           QIVDTTCPWVSKVWT+VEKHKKGDYTSIIHGKY+HEETVATASFAGKYIIVK+MKEA YV
Sbjct: 167 QIVDTTCPWVSKVWTTVEKHKKGDYTSIIHGKYAHEETVATASFAGKYIIVKDMKEAMYV 226

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG 237
           CDYILGGELNGSSST+E FLEKFK AVSKGFDPD DLVK+GIANQTTMLKGETE+IG
Sbjct: 227 CDYILGGELNGSSSTREEFLEKFKNAVSKGFDPDSDLVKLGIANQTTMLKGETEDIG 283

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538819|ref|XP_003537898.1| PREDICTED: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase-like [Glycine max]

 Score =  441 bits (1135), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/237 (88%), Positives = 224/237 (94%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           MN+EYTSDIIK LK+NG+EYTWG V VKLAE+YGFCWGVERAVQIAYEARKQFP E IWI
Sbjct: 83  MNREYTSDIIKTLKDNGYEYTWGTVTVKLAEAYGFCWGVERAVQIAYEARKQFPTETIWI 142

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNPTVNKRLEEM VQNIP+EE  KQFDVVNKGDVV+LPAFGAAVEEM+TL+ KNV
Sbjct: 143 TNEIIHNPTVNKRLEEMNVQNIPLEESGKQFDVVNKGDVVILPAFGAAVEEMLTLSEKNV 202

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           QIVDTTCPWV+KVW SVEKHK+GDYTS+IHGKY+HEETVATASFAGKYIIVKNMKEAEYV
Sbjct: 203 QIVDTTCPWVAKVWNSVEKHKQGDYTSVIHGKYAHEETVATASFAGKYIIVKNMKEAEYV 262

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG 237
           CDYILGGELNGSSSTKEAFLEKFK AVS+GFDPD DL+K GIANQTTMLKGETE+IG
Sbjct: 263 CDYILGGELNGSSSTKEAFLEKFKFAVSEGFDPDRDLIKAGIANQTTMLKGETEDIG 319

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|405789874|gb|AFS28680.1| putative 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, partial [Olea europaea]

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 211/237 (89%), Positives = 227/237 (95%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           MN+EYTSDIIKKLKENG+EYTWGNV VKLAE+YGFCWGVERAVQIAYEARKQFP EKIWI
Sbjct: 8   MNREYTSDIIKKLKENGYEYTWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFPTEKIWI 67

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNPTVN+RL+EM V+N+PV++GKK FDVVNKGDVVVLPAFGAAV+EM+ LN+KNV
Sbjct: 68  TNEIIHNPTVNQRLDEMEVKNLPVKDGKKFFDVVNKGDVVVLPAFGAAVDEMLVLNDKNV 127

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           QIVDTTCPWVSKVWT+VEKHKKG+Y SIIHGKYSHEETVATASFAGKYIIVKNM EA YV
Sbjct: 128 QIVDTTCPWVSKVWTTVEKHKKGEYASIIHGKYSHEETVATASFAGKYIIVKNMAEATYV 187

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG 237
           CDYILGGEL+GSSSTKEAFLEKFK AVS+GFDPD DLVKVGIANQTTMLKGETEEIG
Sbjct: 188 CDYILGGELDGSSSTKEAFLEKFKYAVSEGFDPDTDLVKVGIANQTTMLKGETEEIG 244

Source: Olea europaea

Species: Olea europaea

Genus: Olea

Family: Oleaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|164605002|dbj|BAF98297.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 210/237 (88%), Positives = 225/237 (94%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           MNQEYTSDIIK LKENG +Y WGNV +KLAE+YGFCWGVERAVQIAYEARKQFP+EKIWI
Sbjct: 83  MNQEYTSDIIKTLKENGNQYKWGNVTIKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWI 142

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNPTVNKRLEEM VQNIPV EGKK F+VV+ GDVV+LPAFGAAVEEM+TL+NKNV
Sbjct: 143 TNEIIHNPTVNKRLEEMNVQNIPVGEGKKHFEVVDSGDVVILPAFGAAVEEMLTLSNKNV 202

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           QIVDTTCPWVSKVW +VEKHKKG+YTSIIHGKYSHEET+ATASFAGK+IIVKNM+EA YV
Sbjct: 203 QIVDTTCPWVSKVWNTVEKHKKGEYTSIIHGKYSHEETIATASFAGKHIIVKNMEEAMYV 262

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG 237
           CDYILGG+LNGSSSTKEAFLEKFK AVSKGFDPDVDL KVGIANQTTMLKGETEEIG
Sbjct: 263 CDYILGGQLNGSSSTKEAFLEKFKYAVSKGFDPDVDLDKVGIANQTTMLKGETEEIG 319

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545301|ref|XP_003541082.1| PREDICTED: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase-like [Glycine max]

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/237 (88%), Positives = 223/237 (94%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           MN+EYTSDIIK LKENG+EYTWG V VKLAE+YGFCWGVERAVQIAYEARKQFP E IW+
Sbjct: 1   MNREYTSDIIKTLKENGYEYTWGTVTVKLAEAYGFCWGVERAVQIAYEARKQFPTETIWL 60

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNPTVNKRLEEM VQNIP+EEG KQFDVVNKGDVV+LPAFGAAVEEM+TL+ KNV
Sbjct: 61  TNEIIHNPTVNKRLEEMNVQNIPLEEGGKQFDVVNKGDVVILPAFGAAVEEMLTLSEKNV 120

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           QIVDTTCPWV+KVW SVEKHK+ DYTS+IHGKY+HEETVATASFAGKYIIVKNM EAEYV
Sbjct: 121 QIVDTTCPWVAKVWNSVEKHKQRDYTSVIHGKYAHEETVATASFAGKYIIVKNMAEAEYV 180

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG 237
           CDYILGGELNGSSSTKEAFLEKFK AVS+GFDPD DL+K GIANQTTMLKGETEEIG
Sbjct: 181 CDYILGGELNGSSSTKEAFLEKFKFAVSEGFDPDRDLIKAGIANQTTMLKGETEEIG 237

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195928050|gb|ACG55683.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]

 Score =  438 bits (1127), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/237 (87%), Positives = 225/237 (94%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           MNQEYTSDIIK LKENG +YTWG+V +KLAE+YGFCWGVERAVQIAYEARKQFP+EKIWI
Sbjct: 83  MNQEYTSDIIKTLKENGNQYTWGDVTIKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWI 142

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNPTVNKRLEEM VQNIPV EGKK F+VV+ GDVV+LPAFGAAVEEM+TL+NKNV
Sbjct: 143 TNEIIHNPTVNKRLEEMNVQNIPVGEGKKHFEVVDSGDVVILPAFGAAVEEMLTLSNKNV 202

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           QIVDTTCPWVSKVW +VEKHKKG+YTSIIHGKYSHEET+ATASFAGK+IIVKNM+EA YV
Sbjct: 203 QIVDTTCPWVSKVWNTVEKHKKGEYTSIIHGKYSHEETIATASFAGKHIIVKNMEEAMYV 262

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG 237
           CDYILGG+LNGSSSTKEAFLEKFK AVSKGFDPDVDL K G+ANQTTMLKGETEEIG
Sbjct: 263 CDYILGGQLNGSSSTKEAFLEKFKYAVSKGFDPDVDLDKAGVANQTTMLKGETEEIG 319

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|114329246|gb|ABI64152.1| hydroxymethylbutenyl diphosphate reductase [Camptotheca acuminata]

 Score =  438 bits (1127), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/237 (88%), Positives = 224/237 (94%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           MN+EYTSDIIK LKENG EYTWGNV VKLAESYGFCWGVERAVQIAYEARKQFP+EKIWI
Sbjct: 80  MNREYTSDIIKTLKENGNEYTWGNVTVKLAESYGFCWGVERAVQIAYEARKQFPDEKIWI 139

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEII NPTVNKRLEEM V+NIP+E+GKKQFDVV+KGDVV+LPAFGA V+EM+ L++KNV
Sbjct: 140 TNEIIRNPTVNKRLEEMEVENIPIEDGKKQFDVVDKGDVVILPAFGAGVDEMLVLSDKNV 199

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           QIVDTTCPWVSKVW +VEKHKKG+YTSIIHGKYSHEETVATASFAGK+IIVKNM EA YV
Sbjct: 200 QIVDTTCPWVSKVWNTVEKHKKGEYTSIIHGKYSHEETVATASFAGKFIIVKNMAEATYV 259

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG 237
           CDYILGGEL+GSSSTKEAFLEKFK AVSKGFDPD DL KVGIANQTTMLKGETEEIG
Sbjct: 260 CDYILGGELDGSSSTKEAFLEKFKYAVSKGFDPDSDLAKVGIANQTTMLKGETEEIG 316

Source: Camptotheca acuminata

Species: Camptotheca acuminata

Genus: Camptotheca

Family: Cornaceae

Order: Cornales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255641515|gb|ACU21031.1| unknown [Glycine max]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/237 (87%), Positives = 222/237 (93%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           MN+EYTSDIIK LKENG+EYTWG V VKLAE+YGFCWGVERAVQIAYEARKQFP E IW+
Sbjct: 1   MNREYTSDIIKTLKENGYEYTWGTVTVKLAEAYGFCWGVERAVQIAYEARKQFPTETIWL 60

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNPTVNKRLEEM VQNIP+EEG KQFDVVNKGDVV+LPA GAAVEEM+TL+ KNV
Sbjct: 61  TNEIIHNPTVNKRLEEMNVQNIPLEEGGKQFDVVNKGDVVILPALGAAVEEMLTLSEKNV 120

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           QIVDTTCPWV+KVW SVEKHK+ DYTS+IHGKY+HEETVATASFAGKYIIVKNM EAEYV
Sbjct: 121 QIVDTTCPWVAKVWNSVEKHKQRDYTSVIHGKYAHEETVATASFAGKYIIVKNMAEAEYV 180

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG 237
           CDYILGGELNGSSSTKEAFLEKFK AVS+GFDPD DL+K GIANQTTMLKGETEEIG
Sbjct: 181 CDYILGGELNGSSSTKEAFLEKFKFAVSEGFDPDRDLIKAGIANQTTMLKGETEEIG 237

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
TAIR|locus:2116164	466	HDR "4-hydroxy-3-methylbut-2-e	1.0	0.508	0.810	5.1e-106
TIGR_CMR|ECH_0502	319	ECH_0502 "hydroxymethylbutenyl	0.852	0.633	0.289	6.7e-16
UNIPROTKB|Q749Y8	282	ispH "4-hydroxy-3-methylbut-2-	0.746	0.627	0.288	1.3e-15
TIGR_CMR|GSU_2604	282	GSU_2604 "penicillin tolerance	0.746	0.627	0.288	1.3e-15
TIGR_CMR|APH_0380	324	APH_0380 "4-hydroxy-3-methylbu	0.620	0.453	0.296	1.9e-13
TIGR_CMR|NSE_0438	303	NSE_0438 "4-hydroxy-3-methylbu	0.514	0.402	0.320	5.4e-13
TIGR_CMR|CHY_1925	653	CHY_1925 "hydroxymethylbutenyl	0.607	0.220	0.259	2e-12
TIGR_CMR|DET_1344	284	DET_1344 "hydroxymethylbutenyl	0.763	0.637	0.242	6.1e-10
UNIPROTKB|Q8EBI7	318	ispH "4-hydroxy-3-methylbut-2-	0.578	0.430	0.284	1.7e-09
TIGR_CMR|SO_3529	318	SO_3529 "penicillin tolerance	0.578	0.430	0.284	1.7e-09

TAIR|locus:2116164 HDR "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1049 (374.3 bits), Expect = 5.1e-106, P = 5.1e-106
 Identities = 192/237 (81%), Positives = 218/237 (91%)

Query:     1 MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
             MN+EYTSDI++ LK NG+ Y+WG+V VKLA++YGFCWGVERAVQIAYEARKQFPEE++WI
Sbjct:    87 MNREYTSDILETLKTNGYTYSWGDVTVKLAKAYGFCWGVERAVQIAYEARKQFPEERLWI 146

Query:    61 TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
             TNEIIHNPTVNKRLE+M V+ IPVE+ KKQFDVV K DVV+LPAFGA V+EM  LN+K V
Sbjct:   147 TNEIIHNPTVNKRLEDMDVKIIPVEDSKKQFDVVEKDDVVILPAFGAGVDEMYVLNDKKV 206

Query:   121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
             QIVDTTCPWV+KVW +VEKHKKG+YTS+IHGKY+HEET+ATASFAGKYIIVKNMKEA YV
Sbjct:   207 QIVDTTCPWVTKVWNTVEKHKKGEYTSVIHGKYNHEETIATASFAGKYIIVKNMKEANYV 266

Query:   181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG 237
             CDYILGG+ +GSSSTKE F+EKFK A+SKGFDPD DLVKVGIANQTTMLKGETEEIG
Sbjct:   267 CDYILGGQYDGSSSTKEEFMEKFKYAISKGFDPDNDLVKVGIANQTTMLKGETEEIG 323

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=IEA;IGI;IEP;ISS

GO:0046677 "response to antibiotic" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0046429 "4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity" evidence=IMP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0051745 "4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity" evidence=IGI

GO:0009507 "chloroplast" evidence=IDA

TIGR_CMR|ECH_0502 ECH_0502 "hydroxymethylbutenyl pyrophosphate reductase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 200 (75.5 bits), Expect = 6.7e-16, P = 6.7e-16
 Identities = 64/221 (28%), Positives = 104/221 (47%)

Query:    24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEE-KIWITNEIIHNPTVNKRLEEMAVQNI 82
             NV+V LA   GFC GV RA++I   A K   +  K+++ +EI+HN  +   L+EM V  I
Sbjct:     8 NVEVILANPRGFCAGVSRAIEIVKLAVKYHSDNRKVYVLHEIVHNKYIINSLKEMGVIFI 67

Query:    83 PVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNK-NVQIVDTTCPWVSKVWTSVEKHK 141
                      D    G +++  A G + +E+  L    N++I+D TCP V+KV   V+ + 
Sbjct:    68 DT------LDQAEDGSILIYSAHGIS-KEIEHLGQSCNLEIIDATCPLVNKVHKEVQAYD 120

Query:   142 KGDYTSIIHGKYSHEETVAT-ASFAGKYIIVKNMKEAEYV----CD---YILGGELNGSS 193
             K  Y  I+ G   H E   T        ++V+N+ + + +     D   Y+    L+   
Sbjct:   121 KKGYQIILIGHKGHREVEGTMGQITNPVLLVQNLSDIDNIEVTNSDKLAYVTQTTLS-VD 179

Query:   194 STKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETE 234
              TKE  + K K+       PD+  +     N+ T +K  +E
Sbjct:   180 DTKE-IINKLKQKFPNIKGPDLKDICYATQNRQTAVKQLSE 219

GO:0009240 "isopentenyl diphosphate biosynthetic process" evidence=ISS

GO:0015968 "stringent response" evidence=ISS

GO:0042380 "hydroxymethylbutenyl pyrophosphate reductase activity" evidence=ISS

GO:0046677 "response to antibiotic" evidence=ISS

UNIPROTKB|Q749Y8 ispH "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 54/187 (28%), Positives = 96/187 (51%)

Query:    25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84
             +++ LA+  GFC+GV+RA Q+A+EA ++  E + +    IIH+P V +RLE M V+ +  
Sbjct:     1 MEIVLAKRAGFCFGVKRATQMAFEAAEK--EGETFTLGPIIHSPQVVQRLEGMGVKVLSD 58

Query:    85 EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGD 144
              EG      +  G V++  + G    E+     + +++VD TCP+V K    V++     
Sbjct:    59 LEG------IGNGTVIIR-SHGVTSAELEDAVRRQLEVVDATCPFVKKAQEHVKRLSHDG 111

Query:   145 YTSIIHGKYSHEETVATASFA-GKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKF 203
             YT ++ G   H E     S+A G   +V + +EA  + +    G +  ++ + E      
Sbjct:   112 YTVVVVGDADHPEVQGIVSYAEGPVHVVGSGEEAARLPNMKKVGVVAQTTQSFETLKNVV 171

Query:   204 KKAVSKG 210
             K+ + KG
Sbjct:   172 KECLLKG 178

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|GSU_2604 GSU_2604 "penicillin tolerance protein LytB" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 54/187 (28%), Positives = 96/187 (51%)

Query:    25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84
             +++ LA+  GFC+GV+RA Q+A+EA ++  E + +    IIH+P V +RLE M V+ +  
Sbjct:     1 MEIVLAKRAGFCFGVKRATQMAFEAAEK--EGETFTLGPIIHSPQVVQRLEGMGVKVLSD 58

Query:    85 EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGD 144
              EG      +  G V++  + G    E+     + +++VD TCP+V K    V++     
Sbjct:    59 LEG------IGNGTVIIR-SHGVTSAELEDAVRRQLEVVDATCPFVKKAQEHVKRLSHDG 111

Query:   145 YTSIIHGKYSHEETVATASFA-GKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKF 203
             YT ++ G   H E     S+A G   +V + +EA  + +    G +  ++ + E      
Sbjct:   112 YTVVVVGDADHPEVQGIVSYAEGPVHVVGSGEEAARLPNMKKVGVVAQTTQSFETLKNVV 171

Query:   204 KKAVSKG 210
             K+ + KG
Sbjct:   172 KECLLKG 178

GO:0003674 "molecular_function" evidence=ND

GO:0015968 "stringent response" evidence=ISS

GO:0046677 "response to antibiotic" evidence=ISS

TIGR_CMR|APH_0380 APH_0380 "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 179 (68.1 bits), Expect = 1.9e-13, P = 1.9e-13
 Identities = 46/155 (29%), Positives = 76/155 (49%)

Query:    24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEK-IWITNEIIHNPTVNKRLEEMAVQNI 82
             +V+V LA+  GFC GVERAV I      Q+   K +++ +EI+HN  V   +E    +N+
Sbjct:     7 DVEVILAQPRGFCAGVERAVAILDMVVDQYIASKEVYVLHEIVHNAYV---VESFRKRNV 63

Query:    83 PVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKK 142
                      D V  G V+V  A G A +       + + ++D TCP V+KV   + ++ K
Sbjct:    64 KFVAS---LDEVPTGAVLVFSAHGVAKQVRAAAQERGLVVIDATCPLVTKVHLEIHRYNK 120

Query:   143 GDYTSIIHGKYSHEETVAT-ASFAGKYIIVKNMKE 176
               Y  I+ G   H E   +      + ++V+N+ +
Sbjct:   121 NGYKIILIGHKGHREVEGSMGQIQSEVLLVQNVDD 155

GO:0009240 "isopentenyl diphosphate biosynthetic process" evidence=ISS

GO:0015968 "stringent response" evidence=ISS

GO:0042380 "hydroxymethylbutenyl pyrophosphate reductase activity" evidence=ISS

GO:0046677 "response to antibiotic" evidence=ISS

TIGR_CMR|NSE_0438 NSE_0438 "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 174 (66.3 bits), Expect = 5.4e-13, P = 5.4e-13
 Identities = 41/128 (32%), Positives = 71/128 (55%)

Query:    34 GFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDV 93
             GFC GVERA++    A +++PE+KI++ +EI+HN  V +  +   V  I  E+  K    
Sbjct:    10 GFCAGVERAIETVEIAIRRYPEKKIFVYHEIVHNSRVIQDFKARGVDFI--EDITK---- 63

Query:    94 VNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKY 153
             V    V++  A G + E    + + ++ +VD TCP VSK+   V++ +K  +  ++ G  
Sbjct:    64 VEPKSVLIFSAHGVSEEIEKYVKSLDLVLVDATCPLVSKIHREVQRFEKEGFIILVIGNR 123

Query:   154 SHEETVAT 161
             +H E + T
Sbjct:   124 NHAEIIGT 131

GO:0009240 "isopentenyl diphosphate biosynthetic process" evidence=ISS

GO:0015968 "stringent response" evidence=ISS

GO:0042380 "hydroxymethylbutenyl pyrophosphate reductase activity" evidence=ISS

GO:0046677 "response to antibiotic" evidence=ISS

TIGR_CMR|CHY_1925 CHY_1925 "hydroxymethylbutenyl pyrophosphate reductase/ribosomal protein S1" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 176 (67.0 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 40/154 (25%), Positives = 82/154 (53%)

Query:    25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84
             +++ +A++ GFC+GV+RA++ A +A +      ++    +IHNP   +RL++  +  IP+
Sbjct:     1 MEIIVAQNAGFCFGVKRAIETAQKAAEN--NNPVYSLGPLIHNPQEVERLKKAGI--IPI 56

Query:    85 EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGD 144
             EE ++       G  +++ + G   E++  + ++   + D TCP+V K     +K     
Sbjct:    57 EEIEE-----GNGKTIIIRSHGTTPEKLQEIVDRGYVVEDATCPFVKKAQILAQKLTDEG 111

Query:   145 YTSIIHGKYSHEETVATASFAG-KYIIVKNMKEA 177
             Y  ++ G   H E      ++G K ++V+N +EA
Sbjct:   112 YQVVVVGDKKHPEVQGIVGWSGYKALVVENPEEA 145

GO:0015968 "stringent response" evidence=ISS

GO:0042380 "hydroxymethylbutenyl pyrophosphate reductase activity" evidence=ISS

GO:0046677 "response to antibiotic" evidence=ISS

TIGR_CMR|DET_1344 DET_1344 "hydroxymethylbutenyl pyrophosphate reductase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 158 (60.7 bits), Expect = 6.1e-10, P = 6.1e-10
 Identities = 48/198 (24%), Positives = 92/198 (46%)

Query:    25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84
             +KV+ A + GFC+GV RA+ I  +   +  +  +     ++HN  V  RL  M V+ +  
Sbjct:     1 MKVECASNIGFCFGVRRAINILEKTAAE--KGGVETLGALVHNQQVLNRLSGMGVRVV-- 56

Query:    85 EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEK-HKKG 143
                 K  + ++ G  V + + G     +  L +K +++VDTTCP+V +   + ++ H  G
Sbjct:    57 ----KNIEDIS-GRTVAISSHGVGPLVLDELKSKGLEVVDTTCPFVKRAQVAAKRFHDAG 111

Query:   144 DYTSIIHGKYSHEETVATASFAG----KYIIVKNMKEAEYVCDYILGGELNGSSSTKEAF 199
              +T +I+G  +H E      +AG      +  + + +   V  YI  G L+ ++     F
Sbjct:   112 FFT-VIYGDVNHPEVKGIMGWAGGDGLATLNPQGLVDVPDVSRYI--GVLSQTTQIPTGF 168

Query:   200 LEKFKKAVSKGFDPDVDL 217
                 K  + +    D ++
Sbjct:   169 TSFVKNVIDQALVKDAEI 186

GO:0015968 "stringent response" evidence=ISS

GO:0042380 "hydroxymethylbutenyl pyrophosphate reductase activity" evidence=ISS

GO:0046677 "response to antibiotic" evidence=ISS

UNIPROTKB|Q8EBI7 ispH "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 156 (60.0 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 41/144 (28%), Positives = 69/144 (47%)

Query:    18 FEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM 77
             F+ T  ++ + LA   GFC GV+RA+ I   A + F    I++ +E++HN  V + L++ 
Sbjct:     3 FDPTSPSLNIMLANPRGFCAGVDRAISIVERALELF-SPPIYVRHEVVHNRYVVQNLKDR 61

Query:    78 AVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSV 137
                 + VEE     D V   ++V+  A G +         + +++ D TCP V+KV   V
Sbjct:    62 GA--VFVEE----LDQVPDNNIVIFSAHGVSQAVRAEAKARGLRVFDATCPLVTKVHLQV 115

Query:   138 EKHKKGDYTSIIHGKYSHEETVAT 161
              +  +     I+ G   H E   T
Sbjct:   116 TRASRKGIECILIGHAGHPEVEGT 139

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|SO_3529 SO_3529 "penicillin tolerance protein LytB" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 156 (60.0 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 41/144 (28%), Positives = 69/144 (47%)

Query:    18 FEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM 77
             F+ T  ++ + LA   GFC GV+RA+ I   A + F    I++ +E++HN  V + L++ 
Sbjct:     3 FDPTSPSLNIMLANPRGFCAGVDRAISIVERALELF-SPPIYVRHEVVHNRYVVQNLKDR 61

Query:    78 AVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSV 137
                 + VEE     D V   ++V+  A G +         + +++ D TCP V+KV   V
Sbjct:    62 GA--VFVEE----LDQVPDNNIVIFSAHGVSQAVRAEAKARGLRVFDATCPLVTKVHLQV 115

Query:   138 EKHKKGDYTSIIHGKYSHEETVAT 161
              +  +     I+ G   H E   T
Sbjct:   116 TRASRKGIECILIGHAGHPEVEGT 139

GO:0003674 "molecular_function" evidence=ND

GO:0046677 "response to antibiotic" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94B35	ISPH_ARATH	1, ., 1, 7, ., 1, ., 2	0.8101	1.0	0.5085	yes	no
Q6AVG6	ISPH_ORYSJ	1, ., 1, 7, ., 1, ., 2	0.8523	1.0	0.5163	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.17.1.2	0.824
3rd Layer	1.17.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	HDR	SubName- Full=Putative chloroplast 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase; EC=1.17.1.2; Flags- Fragment; (460 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	HDS	SubName- Full=Putative chloroplast 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; EC=1.1 [...] (742 aa)			•			•	•		0.952
	estExt_fgenesh4_pm.C_660111	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC-1.17.7.1) (761 aa)			•			•	•		0.947
	IDI	SubName- Full=Putative chloroplast isopentenyl diphosphate isomerase; EC=5.3.3.2; Flags- Fragme [...] (234 aa)						•	•		0.920
	gw1.XV.832.1	hypothetical protein (236 aa)						•			0.899
	gw1.VII.3333.1	annotation not avaliable (311 aa)						•			0.899
	gw1.IV.3487.1	hypothetical protein (293 aa)						•			0.899
	gw1.II.860.1	hypothetical protein (306 aa)						•			0.899
	IspS	SubName- Full=Putative chloroplast isoprene synthase; Flags- Fragment; (536 aa)						•			0.899
	grail3.0137000601	hypothetical protein (134 aa)						•			0.899
	grail3.0106013901	diphosphomevalonate decarboxylase (EC-4.1.1.33) (417 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	237
PLN02821	460	PLN02821, PLN02821, 1-hydroxy-2-methyl-2-(E)-buten	1e-174
PRK13371	387	PRK13371, PRK13371, 4-hydroxy-3-methylbut-2-enyl d	1e-150
pfam02401	280	pfam02401, LYTB, LytB protein	2e-53
COG0761	294	COG0761, lytB, 4-Hydroxy-3-methylbut-2-enyl diphos	7e-52
TIGR00216	280	TIGR00216, ispH_lytB, (E)-4-hydroxy-3-methyl-but-2	9e-48
PRK01045	298	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl dipho	6e-24
PRK12360	281	PRK12360, PRK12360, 4-hydroxy-3-methylbut-2-enyl d	1e-23
PRK00087	647	PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl d	2e-23

>gnl|CDD|215440 PLN02821, PLN02821, 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase

 Score =  486 bits (1253), Expect = e-174
 Identities = 200/238 (84%), Positives = 216/238 (90%), Gaps = 1/238 (0%)

Query: 1   MNQEY-TSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIW 59
           M  EY TSD++K LKENG  YTWG+V VKLA++YGFCWGVERAVQIAYEARKQFP+EK+W
Sbjct: 81  MGVEYSTSDLVKTLKENGNVYTWGDVTVKLAKAYGFCWGVERAVQIAYEARKQFPDEKLW 140

Query: 60  ITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKN 119
           ITNEIIHNPTVNKRLEEM VQ I VEEG K F VV +GDVV+LPAFGA+VEEM TLN+KN
Sbjct: 141 ITNEIIHNPTVNKRLEEMNVQFIEVEEGGKDFSVVGEGDVVILPAFGASVEEMQTLNDKN 200

Query: 120 VQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEY 179
           VQIVDTTCPWVSKVW +VEKHKK DYTS+IHGKY+HEETVATASFAGKYIIVKNMKEA Y
Sbjct: 201 VQIVDTTCPWVSKVWNTVEKHKKKDYTSVIHGKYAHEETVATASFAGKYIIVKNMKEATY 260

Query: 180 VCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG 237
           VCDYILGG+L+GSS TKE FLEKFK AVSKGFDPD DLVKVGIANQTTMLKGETEEIG
Sbjct: 261 VCDYILGGQLDGSSGTKEEFLEKFKNAVSKGFDPDTDLVKVGIANQTTMLKGETEEIG 318

Length = 460

>gnl|CDD|237367 PRK13371, PRK13371, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional

 Score =  424 bits (1092), Expect = e-150
 Identities = 151/237 (63%), Positives = 185/237 (78%), Gaps = 6/237 (2%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           +   Y S +I+ ++ENG+   +G+V +KLA ++GFCWGVERAV +AYE R+ FP+E+IWI
Sbjct: 14  LETAYQSSLIQSIRENGYVLQFGDVTIKLARAFGFCWGVERAVAMAYETRRHFPDERIWI 73

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNP+VN+ L EM V+ IPVE+G K F VV  GDVV+LPAFGA V+EM  LN K  
Sbjct: 74  TNEIIHNPSVNQHLREMGVRFIPVEKGVKDFSVVTPGDVVILPAFGATVQEMQLLNEKGC 133

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
            IVDTTCPWVSKVW +VEKHKK D+TSIIHGKY HEET AT+SFAG Y++V +++EA+YV
Sbjct: 134 HIVDTTCPWVSKVWNTVEKHKKKDFTSIIHGKYKHEETRATSSFAGTYLVVLDLEEAQYV 193

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG 237
            DYILGG        +E FLE+F KA S GFDPD DL +VG+ANQTTMLK ETEEIG
Sbjct: 194 ADYILGG------GDREEFLERFAKAYSPGFDPDRDLERVGVANQTTMLKSETEEIG 244

Length = 387

>gnl|CDD|217018 pfam02401, LYTB, LytB protein

 Score =  173 bits (440), Expect = 2e-53
 Identities = 61/212 (28%), Positives = 93/212 (43%), Gaps = 40/212 (18%)

Query: 27  VKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEE 86
           + LAE  GFC GV+RA+QIA  A ++     +++  EI+HN  V  RL E     I VEE
Sbjct: 1   IILAEPRGFCAGVKRAIQIAERALQKSGG-PVYVRGEIVHNRHVVNRLRERGA--IFVEE 57

Query: 87  GKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYT 146
            K+    V +G  V+  A G + E       + +Q++D TCP V+KV  +VE+  K  Y 
Sbjct: 58  LKE----VPEGATVIFSAHGVSPEVREEAKERGLQVIDATCPLVTKVHNAVERMAKKGYH 113

Query: 147 SIIHGKYSHEETVATASFA-GKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKK 205
            I+ G  +H E   T  +A  +  +V+N ++                             
Sbjct: 114 VILIGHKNHPEVEGTVGYAPEQVFVVENAEDV---------------------------- 145

Query: 206 AVSKGFDPDVDLVKVGIANQTTMLKGETEEIG 237
                  P     K+ +  QTT+   +T EI 
Sbjct: 146 ----AALPLQADTKLAVVTQTTLSLDDTAEIV 173

The mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway for isoprenoid biosynthesis is essential in many eubacteria, plants, and the malaria parasite. The LytB gene is involved in the trunk line of the MEP pathway. Length = 280

>gnl|CDD|223832 COG0761, lytB, 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]

 Score =  169 bits (431), Expect = 7e-52
 Identities = 59/213 (27%), Positives = 92/213 (43%), Gaps = 37/213 (17%)

Query: 25  VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84
           +K+ LA+  GFC GV+RA+QI   A +++    I++ +EI+HN  V  RL E     I V
Sbjct: 2   MKILLAKPRGFCAGVDRAIQIVERALEEYGA-PIYVRHEIVHNRYVVDRLREKGA--IFV 58

Query: 85  EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGD 144
           EE  +    V  G  V+  A G +         + ++++D TCP V+KV   VE++ +  
Sbjct: 59  EELDE----VPDGATVIFSAHGVSPAVREEAKERGLKVIDATCPLVTKVHKEVERYAREG 114

Query: 145 YTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFK 204
           Y  I+ G   H E + T                +Y    +L  E           +E   
Sbjct: 115 YEIILIGHKGHPEVIGTMG--------------QYPEGGVLLVE----------SVEDVA 150

Query: 205 KAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG 237
               +   PD    K+    QTT+   +T EI 
Sbjct: 151 NLKVQ--LPD----KLAFVTQTTLSVDDTAEIV 177

Length = 294

>gnl|CDD|232878 TIGR00216, ispH_lytB, (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming)

 Score =  158 bits (402), Expect = 9e-48
 Identities = 63/213 (29%), Positives = 103/213 (48%), Gaps = 41/213 (19%)

Query: 26  KVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVE 85
            + LA+  GFC+GV+RA+Q+A EA K+  +  ++    I+HNP V +RL E  V      
Sbjct: 1   DIILAKPRGFCFGVKRAIQMAEEALKESGK-PVYTLGPIVHNPQVVERLRERGVFFF--- 56

Query: 86  EGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDY 145
              +  D V  GD V++ A G   E    L  K ++++D TCP V+KV  +V+K+ K  Y
Sbjct: 57  --LEDLDEVAAGDTVIIRAHGVPPEVREELEKKGLEVIDATCPLVTKVHNAVKKYAKEGY 114

Query: 146 TSIIHGKYSHEETVATASFA-GKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFK 204
             I+ GK +H E + T  +A  K I+V+ +++ E                       K +
Sbjct: 115 HVILIGKKNHPEVIGTRGYAPDKAIVVETLEDLENF---------------------KVE 153

Query: 205 KAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG 237
                          +G+ +QTT+ + +T+EI 
Sbjct: 154 D-------------LLGVVSQTTLSQEDTKEIV 173

The IspH protein (previously designated LytB) has now been recognized as the last enzyme in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 280

>gnl|CDD|234893 PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed

 Score = 96.7 bits (242), Expect = 6e-24
 Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 8/154 (5%)

Query: 26  KVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVE 85
           K+ LA   GFC GV+RA++I   A +++    I++ +EI+HN  V +RLE+     I VE
Sbjct: 2   KILLANPRGFCAGVDRAIEIVERALEKY-GAPIYVRHEIVHNRYVVERLEKKGA--IFVE 58

Query: 86  EGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDY 145
           E     D V  G +V+  A G +         + + ++D TCP V+KV   V +  +  Y
Sbjct: 59  E----LDEVPDGAIVIFSAHGVSPAVREEAKERGLTVIDATCPLVTKVHKEVARMSREGY 114

Query: 146 TSIIHGKYSHEETVATASFA-GKYIIVKNMKEAE 178
             I+ G   H E   T   A G   +V++ ++  
Sbjct: 115 EIILIGHKGHPEVEGTMGQAPGGVYLVESPEDVA 148

Length = 298

>gnl|CDD|237075 PRK12360, PRK12360, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional

 Score = 95.6 bits (238), Expect = 1e-23
 Identities = 50/154 (32%), Positives = 86/154 (55%), Gaps = 5/154 (3%)

Query: 26  KVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVE 85
           K+ +A++ GFC+GV+RA+  AY+  ++   +KI+    +IHN  V   LEE  V+ I   
Sbjct: 2   KILIAKNAGFCFGVKRAIDTAYDEIEKNDGKKIYTLGPLIHNNQVVSDLEEKGVKTIEES 61

Query: 86  EGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDY 145
           E     D + +GDVV++ + G + +    L +K ++I+D TCP+V K+   VE++    Y
Sbjct: 62  E----IDSLKEGDVVIIRSHGVSKKVYKDLKDKGLEIIDATCPFVKKIQNIVEEYYNKGY 117

Query: 146 TSIIHGKYSHEETVATASFA-GKYIIVKNMKEAE 178
           + II G  +H E +    +      IV +++E E
Sbjct: 118 SIIIVGDKNHPEVIGINGWCDNSAYIVNSIEEVE 151

Length = 281

>gnl|CDD|234623 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed

 Score = 98.1 bits (245), Expect = 2e-23
 Identities = 51/188 (27%), Positives = 99/188 (52%), Gaps = 9/188 (4%)

Query: 26  KVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVE 85
           ++ LA+  GFC+GV+RAV  A +  ++    KI+    +IHN  V ++L++  +   P+E
Sbjct: 2   EIILAKKAGFCFGVKRAVDTAIKTAEELKG-KIYTLGPLIHNNQVVEKLKKKGI--KPIE 58

Query: 86  EGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDY 145
           +     D +N+GD +++ + G   E +  L +K ++++D TCP+V  +    +K+ +  Y
Sbjct: 59  D----IDELNEGDTIIIRSHGVPPEVLEELKDKGLKVIDATCPFVKNIQKLAKKYYEEGY 114

Query: 146 TSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFK 204
             +I G  +H E +    +     IIV++ +EAE +        ++ ++  +E F EK  
Sbjct: 115 QIVIVGDKNHPEVIGINGWCNNSAIIVEDGEEAEKLPFDKKICVVSQTTEKQENF-EKVL 173

Query: 205 KAVSKGFD 212
           K + K   
Sbjct: 174 KELKKKGK 181

Length = 647

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	237
PLN02821	460	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate red	100.0
PRK13371	387	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	100.0
COG0761	294	lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate redu	100.0
PRK12360	281	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	100.0
PRK01045	298	ispH 4-hydroxy-3-methylbut-2-enyl diphosphate redu	100.0
TIGR00216	280	ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyroph	100.0
PF02401	281	LYTB: LytB protein; InterPro: IPR003451 Terpenes a	100.0
PRK00087	647	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	100.0
PF02401	281	LYTB: LytB protein; InterPro: IPR003451 Terpenes a	93.15
COG1587	248	HemD Uroporphyrinogen-III synthase [Coenzyme metab	87.99
PF02602	231	HEM4: Uroporphyrinogen-III synthase HemD; InterPro	87.69
PF02571	249	CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro:	87.3
PRK01045	298	ispH 4-hydroxy-3-methylbut-2-enyl diphosphate redu	86.31
PRK08057	248	cobalt-precorrin-6x reductase; Reviewed	85.09
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	82.57
PF14542	78	Acetyltransf_CG: GCN5-related N-acetyl-transferase	81.14
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	80.05

>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase

Probab=100.00  E-value=6.2e-86  Score=626.43  Aligned_cols=237  Identities=84%  Similarity=1.307  Sum_probs=230.3

Q ss_pred             CCccc-chhHHHHHHHcCCcceecceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCc
Q 026546            1 MNQEY-TSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAV   79 (237)
Q Consensus         1 ~~~~~-~s~~i~~~~~~~~~~~~g~m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv   79 (237)
                      |.++| +|+||++||+|||.|.||+|+|+||+++||||||+|||++|+++++++|+++||++|||||||+|+++|++|||
T Consensus        81 ~~~~y~~s~li~~~r~~~~~~~~g~m~I~LA~~~GFC~GVeRAV~~A~ea~~~~p~~~Iy~lgeIIHNp~Vv~~L~~~GV  160 (460)
T PLN02821         81 MGVEYSTSDLVKTLKENGNVYTWGDVTVKLAKAYGFCWGVERAVQIAYEARKQFPDEKLWITNEIIHNPTVNKRLEEMNV  160 (460)
T ss_pred             hhhhhhccHHHHHHHhCCCeEEecceEEEEeCCCCCCccHHHHHHHHHHHHhhCCCCCeEEecCCccCHHHHHHHHHCCC
Confidence            46788 99999999999999999999999999999999999999999999988887899999999999999999999999


Q ss_pred             EEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCccee
Q 026546           80 QNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETV  159 (237)
Q Consensus        80 ~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~  159 (237)
                      +|++..++.++++++++||+|||||||+||+++++|++||+.|||||||||+|||+.|+++.++||++|||||++||||+
T Consensus       161 ~~I~~~~~~~~~~~v~~gdvVIirAHGvs~~~~~~l~~kg~~IVDaTCP~V~KV~~~v~k~~k~gy~iII~Gk~~HpEv~  240 (460)
T PLN02821        161 QFIEVEEGGKDFSVVGEGDVVILPAFGASVEEMQTLNDKNVQIVDTTCPWVSKVWNTVEKHKKKDYTSVIHGKYAHEETV  240 (460)
T ss_pred             EEecccccccccccCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEecCCcchHHHHHHHHHHHhCCCEEEEECCCCCccee
Confidence            99997777778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeccccCeeEEEcChhhHHhhhhhhcCCccCCCCchHHHHHHHHHhhhcCCCCCCCCCcceEEEecccCChhhhhhcC
Q 026546          160 ATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG  237 (237)
Q Consensus       160 g~~g~a~~~~vv~~~~e~~~~~~~~~~~q~~~~~~~~~~f~~~f~~~~s~gfdp~~~l~~v~v~nQTTm~~~et~~i~  237 (237)
                      ||.|||++++||++++|++++|+||+++++|+|++++++|+++|++++|+||||+.+++|||++|||||+++||++|+
T Consensus       241 gt~s~a~~~~VV~~~~ea~~v~~yi~~~~~~~~~~~~~~f~~~f~~a~s~~fdpd~~l~kvgvvnQTTm~~~et~~I~  318 (460)
T PLN02821        241 ATASFAGKYIIVKNMKEATYVCDYILGGQLDGSSGTKEEFLEKFKNAVSKGFDPDTDLVKVGIANQTTMLKGETEEIG  318 (460)
T ss_pred             ecccccCCeEEECCHHHHHHHhhhcccccccccccchhhhhhhhcccccccCCcccccccEEEEECCCCcHHHHHHHH
Confidence            999999989999999999999999999999999999999999999999999999999999999999999999999984

>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional

Probab=100.00  E-value=4.3e-77  Score=558.49  Aligned_cols=229  Identities=66%  Similarity=1.136  Sum_probs=218.9

Q ss_pred             CcccchhHHHHHHHcCCcceecceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEE
Q 026546            2 NQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQN   81 (237)
Q Consensus         2 ~~~~~s~~i~~~~~~~~~~~~g~m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~   81 (237)
                      ..+|||+||++||++|++|.+|+|+|+||+++||||||+|||++|+++++++++++||++|||||||+|+++|+++||++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~m~I~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~vytlG~IIHNp~Vv~~L~~~Gv~~   94 (387)
T PRK13371         15 ETAYQSSLIQSIRENGYVLQFGDVTIKLARAFGFCWGVERAVAMAYETRRHFPDERIWITNEIIHNPSVNQHLREMGVRF   94 (387)
T ss_pred             HHHHhHHHHHHHHhCCCeeeeCCeEEEEeCCCCCCccHHHHHHHHHHHHhhcCCCCeEEecCCcCCHHHHHHHHhCCCEE
Confidence            46899999999999999999999999999999999999999999999987776679999999999999999999999999


Q ss_pred             ecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeee
Q 026546           82 IPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVAT  161 (237)
Q Consensus        82 v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~  161 (237)
                      +++.++.++++++++|++|||||||+||+++++|++||+.|||||||+|+|+|++|++++++||+|||||+++||||+||
T Consensus        95 v~~~~~~~~~~~v~~~~~VIIrAHGv~~~v~~~~~~rgl~iiDATCP~V~kvh~~v~~~~~~Gy~iIIiG~~~HpEV~Gi  174 (387)
T PRK13371         95 IPVEKGVKDFSVVTPGDVVILPAFGATVQEMQLLNEKGCHIVDTTCPWVSKVWNTVEKHKKKDFTSIIHGKYKHEETRAT  174 (387)
T ss_pred             EcCcCcccchhcCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEecCCccchHHHHHHHHHHhCCCEEEEEcCCCCcceeee
Confidence            98644445689999899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCeeEEEcChhhHHhhhhhhcCCccCCCCchHHHHHHHHHhhhcCCCCCCCCCcceEEEecccCChhhhhhc
Q 026546          162 ASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEI  236 (237)
Q Consensus       162 ~g~a~~~~vv~~~~e~~~~~~~~~~~q~~~~~~~~~~f~~~f~~~~s~gfdp~~~l~~v~v~nQTTm~~~et~~i  236 (237)
                      .||+++++||++++|++++++|+..+      .++.+|+++|..+.|++|||+.+++|++++|||||+.++|.+|
T Consensus       175 ~g~a~~~~VV~~~~e~~~l~~~~~~~------~~~~~~~~~f~~~~s~~~~~~~~~~kv~vvsQTT~~~~~~~~i  243 (387)
T PRK13371        175 SSFAGTYLVVLDLEEAQYVADYILGG------GDREEFLERFAKAYSPGFDPDRDLERVGVANQTTMLKSETEEI  243 (387)
T ss_pred             ccccCceEEECCHHHHHHHhhhhccc------cchhhhhhhhhhcccccCCccCCCccEEEEECCCCcHHHHHHH
Confidence            99998889999999999999999998      7899999999999999999999999999999999999999987

>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]

Probab=100.00  E-value=1e-64  Score=457.80  Aligned_cols=175  Identities=29%  Similarity=0.451  Sum_probs=162.4

Q ss_pred             ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEc
Q 026546           24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLP  103 (237)
Q Consensus        24 ~m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIir  103 (237)
                      +|+|+||+|+||||||+|||++|++++++|+ +|||++||||||++|+++|+++|+.|+++      ++++|+|++||||
T Consensus         1 ~~~I~lA~prGFCaGV~RAI~ive~al~~~g-~pIyv~~eIVHN~~Vv~~L~~~g~~fve~------l~e~p~~~~VIfs   73 (294)
T COG0761           1 MMKILLAKPRGFCAGVDRAIQIVERALEEYG-APIYVRHEIVHNRYVVDRLREKGAIFVEE------LDEVPDGATVIFS   73 (294)
T ss_pred             CceEEEecCCccchhHHHHHHHHHHHHHHcC-CCeEEEeccccCHHHHHHHHHcCCEeccc------cccCCCCCEEEEE
Confidence            4899999999999999999999999999986 68999999999999999999999999984      7999999999999


Q ss_pred             CCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccc-C-eeEEEcChhhHHhhh
Q 026546          104 AFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA-G-KYIIVKNMKEAEYVC  181 (237)
Q Consensus       104 AHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a-~-~~~vv~~~~e~~~~~  181 (237)
                      |||+||++++.|++||++++|||||||+|+|+.|++++++||+||+|||++||||+||+|++ + ..+++++++|++.+.
T Consensus        74 AHGVs~~v~~~a~~r~l~v~DATCPlVtKvh~~v~~~~~~G~~iIliG~~gHpEv~Gt~Gq~~~~~~~lve~~~d~~~l~  153 (294)
T COG0761          74 AHGVSPAVREEAKERGLKVIDATCPLVTKVHKEVERYAREGYEIILIGHKGHPEVIGTMGQYPEGGVLLVESVEDVANLK  153 (294)
T ss_pred             CCCCCHHHHHHHHHCCCEEEecCCCcchHHHHHHHHHHhCCCEEEEEccCCCCceeeeccccCCCceEEEecHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999954 4 389999999997651


Q ss_pred             hhhcCCccCCCCchHHHHHHHHHhhhcCCCCCCCCCcceEEEecccCChhhhhhcC
Q 026546          182 DYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG  237 (237)
Q Consensus       182 ~~~~~~q~~~~~~~~~~f~~~f~~~~s~gfdp~~~l~~v~v~nQTTm~~~et~~i~  237 (237)
                                                      ....++++|+||||||++||++|.
T Consensus       154 --------------------------------~~~~~~l~~~tQTTls~ddt~~Iv  177 (294)
T COG0761         154 --------------------------------VQLPDKLAFVTQTTLSVDDTAEIV  177 (294)
T ss_pred             --------------------------------cCCcccEEEEeeeecCHHHHHHHH
Confidence                                            123349999999999999999873

>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional

Probab=100.00  E-value=1.2e-62  Score=446.03  Aligned_cols=174  Identities=33%  Similarity=0.561  Sum_probs=159.8

Q ss_pred             eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcC
Q 026546           25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA  104 (237)
Q Consensus        25 m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirA  104 (237)
                      |+|+||+++||||||+|||++|++++..+++++||++|||||||+|+++|+++||.++++    ++++++++|++|||||
T Consensus         1 M~I~lA~~~GFC~GV~rAi~~a~~~~~~~~~~~vy~lG~iVHN~~Vv~~L~~~Gv~~v~~----~~~~~v~~~~~ViirA   76 (281)
T PRK12360          1 MKILIAKNAGFCFGVKRAIDTAYDEIEKNDGKKIYTLGPLIHNNQVVSDLEEKGVKTIEE----SEIDSLKEGDVVIIRS   76 (281)
T ss_pred             CEEEEeCCCCCCccHHHHHHHHHHHHHhcCCCCeEEecCCcCCHHHHHHHHHCcCEEECc----CchhhCCCCCEEEEeC
Confidence            899999999999999999999999877665679999999999999999999999999943    2478999899999999


Q ss_pred             CCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeeccccC-eeEEEcChhhHHhhhhh
Q 026546          105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDY  183 (237)
Q Consensus       105 HGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a~-~~~vv~~~~e~~~~~~~  183 (237)
                      ||+||+++++|++||+.|||||||||+|+|+.|+++.++||+|||+|+++||||+|+.||++ .++||++++|++.+   
T Consensus        77 HGv~~~~~~~~~~~g~~viDaTCP~V~k~~~~v~~~~~~Gy~iviiG~~~HpEv~gi~g~~~~~~~vv~~~~d~~~l---  153 (281)
T PRK12360         77 HGVSKKVYKDLKDKGLEIIDATCPFVKKIQNIVEEYYNKGYSIIIVGDKNHPEVIGINGWCDNSAYIVNSIEEVENI---  153 (281)
T ss_pred             CCCCHHHHHHHHHCCCeEEeCCCccchHHHHHHHHHHhCCCEEEEEcCCCCceeeEeccCcCCCeEEECCHHHHhhC---
Confidence            99999999999999999999999999999999999999999999999999999999999996 56899999999754   


Q ss_pred             hcCCccCCCCchHHHHHHHHHhhhcCCCCCCCCCcceEEEecccCChhhhhhc
Q 026546          184 ILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEI  236 (237)
Q Consensus       184 ~~~~q~~~~~~~~~~f~~~f~~~~s~gfdp~~~l~~v~v~nQTTm~~~et~~i  236 (237)
                                                   |  .++++++++||||+.+++.+|
T Consensus       154 -----------------------------~--~~~kv~~vsQTT~~~~~~~~i  175 (281)
T PRK12360        154 -----------------------------P--FLDKACVVAQTTIIPELWEDI  175 (281)
T ss_pred             -----------------------------c--cccCEEEEECCCCcHHHHHHH
Confidence                                         1  126899999999999998876

>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed

Probab=100.00  E-value=2e-61  Score=441.19  Aligned_cols=173  Identities=29%  Similarity=0.468  Sum_probs=159.3

Q ss_pred             eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcC
Q 026546           25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA  104 (237)
Q Consensus        25 m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirA  104 (237)
                      |+|+||+++||||||+|||++|++++.++ +++||++|||||||+|+++|+++||.++++      ++++++|++|||||
T Consensus         1 MkI~lA~~~GFC~GV~rAi~~a~~~~~~~-~~~iytlG~iIHN~~vv~~L~~~GV~~v~~------~~~v~~~~~ViirA   73 (298)
T PRK01045          1 MKILLANPRGFCAGVDRAIEIVERALEKY-GAPIYVRHEIVHNRYVVERLEKKGAIFVEE------LDEVPDGAIVIFSA   73 (298)
T ss_pred             CEEEEeCCCCCCccHHHHHHHHHHHHHhc-CCCeEEEecCccCHHHHHHHHHCCCEEecC------cccCCCCCEEEEeC
Confidence            89999999999999999999999987654 468999999999999999999999999974      78898899999999


Q ss_pred             CCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeeccccC-eeEEEcChhhHHhhhhh
Q 026546          105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDY  183 (237)
Q Consensus       105 HGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a~-~~~vv~~~~e~~~~~~~  183 (237)
                      ||+||+++++|++||+.|||||||||+|+|+.|+++.++||+|||+|+++||||+|+.||++ .++|+++++|++.+.  
T Consensus        74 HGv~~~~~~~~~~~g~~viDaTCP~V~k~~~~v~~~~~~Gy~vvi~G~~~HpEv~gi~g~~~~~~~vv~~~~e~~~l~--  151 (298)
T PRK01045         74 HGVSPAVREEAKERGLTVIDATCPLVTKVHKEVARMSREGYEIILIGHKGHPEVEGTMGQAPGGVYLVESPEDVAKLE--  151 (298)
T ss_pred             CCCCHHHHHHHHHCCCeEEeCCCccchHHHHHHHHHHhCCCEEEEEeCCCCCeeeeeccCcCCCEEEEcCHHHHhhcc--
Confidence            99999999999999999999999999999999999999999999999999999999999995 578999999997541  


Q ss_pred             hcCCccCCCCchHHHHHHHHHhhhcCCCCCCCCCcceEEEecccCChhhhhhc
Q 026546          184 ILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEI  236 (237)
Q Consensus       184 ~~~~q~~~~~~~~~~f~~~f~~~~s~gfdp~~~l~~v~v~nQTTm~~~et~~i  236 (237)
                                                    ..+.+++++++||||+.+++++|
T Consensus       152 ------------------------------~~~~~~v~vvsQTT~~~~~~~~i  174 (298)
T PRK01045        152 ------------------------------VKDPDKLALVTQTTLSVDDTAEI  174 (298)
T ss_pred             ------------------------------cCCCCcEEEEEcCCCcHHHHHHH
Confidence                                          12457899999999999998876

>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming)

Probab=100.00  E-value=3.6e-61  Score=436.31  Aligned_cols=170  Identities=36%  Similarity=0.582  Sum_probs=155.5

Q ss_pred             EEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCc-EEecCCccccccccccCCCEEEEcC
Q 026546           26 KVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAV-QNIPVEEGKKQFDVVNKGDVVVLPA  104 (237)
Q Consensus        26 ~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv-~~v~~~~~~~~~~~v~~g~~VIirA  104 (237)
                      +|+||+++||||||+|||++|+++++.. +++||++|||||||+|+++|+++|| .+++      +++++++|++|||||
T Consensus         1 ~I~lA~~~GFC~GV~rAi~~a~~~~~~~-~~~iy~lG~iIHN~~Vv~~L~~~Gv~~~v~------~~~~v~~~~~ViirA   73 (280)
T TIGR00216         1 DIILAKPRGFCFGVKRAIQMAEEALKES-GKPVYTLGPIVHNPQVVERLRERGVFFFLE------DLDEVAAGDTVIIRA   73 (280)
T ss_pred             CEEEccCCCCCccHHHHHHHHHHHHhhc-CCCeEEecCCccCHHHHHHHHHCCCEEeec------CcccCCCCCEEEEeC
Confidence            5899999999999999999999988654 4799999999999999999999996 7776      478999899999999


Q ss_pred             CCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeeccccC-eeEEEcChhhHHhhhhh
Q 026546          105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDY  183 (237)
Q Consensus       105 HGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a~-~~~vv~~~~e~~~~~~~  183 (237)
                      ||+||+++++|+++|+.|||||||||+|+|+.|+++.++||+|||+|+++||||+|+.||++ .++||++++|++.+   
T Consensus        74 HGv~~~~~~~~~~~gl~viDaTCP~V~kv~~~v~~~~~~Gy~iiiiG~~~HpEv~gi~g~~~~~~~vv~~~~d~~~l---  150 (280)
T TIGR00216        74 HGVPPEVREELEKKGLEVIDATCPLVTKVHNAVKKYAKEGYHVILIGKKNHPEVIGTRGYAPDKAIVVETLEDLENF---  150 (280)
T ss_pred             CCCCHHHHHHHHHCCCeEEeCCCcccHHHHHHHHHHHhCCCEEEEEeCCCCCeeeeeccCcCCCEEEECCHHHHHhC---
Confidence            99999999999999999999999999999999999999999999999999999999999996 46899999998654   


Q ss_pred             hcCCccCCCCchHHHHHHHHHhhhcCCCCCCCCCcceEEEecccCChhhhhhc
Q 026546          184 ILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEI  236 (237)
Q Consensus       184 ~~~~q~~~~~~~~~~f~~~f~~~~s~gfdp~~~l~~v~v~nQTTm~~~et~~i  236 (237)
                                                   |  ..+++++++||||+.+++++|
T Consensus       151 -----------------------------~--~~~~v~vvsQTT~~~~~~~~i  172 (280)
T TIGR00216       151 -----------------------------K--VEDLLGVVSQTTLSQEDTKEI  172 (280)
T ss_pred             -----------------------------C--CCCcEEEEEcCCCcHHHHHHH
Confidence                                         1  135799999999999999876

Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.

>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids

Probab=100.00  E-value=4.9e-61  Score=435.67  Aligned_cols=171  Identities=36%  Similarity=0.594  Sum_probs=141.1

Q ss_pred             EEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCC
Q 026546           27 VKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG  106 (237)
Q Consensus        27 I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHG  106 (237)
                      |+||+++||||||+|||++|++++++++ ++||++|||||||+|+++|+++||+++++      ++++|+|++|||||||
T Consensus         1 I~lA~~~GfC~GV~rAi~~a~~~~~~~~-~~vy~lG~iIHN~~vv~~L~~~Gv~~v~~------~~~~~~g~~ViirAHG   73 (281)
T PF02401_consen    1 IILAKPAGFCFGVKRAIEIAEEALEEYP-GPVYTLGPIIHNPQVVERLEKRGVKVVDD------IDEVPEGDTVIIRAHG   73 (281)
T ss_dssp             EEE-TT-SS-HHHHHHHHHHHHHCCCHS-S-EEECS-SSS-HHHHHHHHHCTEEEESS------GCGS-TTEEEEE-TT-
T ss_pred             CEecCCCCcCccHHHHHHHHHHHHHhcC-CCEEEecCcccCHHHHHHHHHCCCEEecC------ccccCCCCEEEEeCCC
Confidence            6899999999999999999999998765 49999999999999999999999999985      6889999999999999


Q ss_pred             CCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeeccccC--eeEEEcChhhHHhhhhhh
Q 026546          107 AAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG--KYIIVKNMKEAEYVCDYI  184 (237)
Q Consensus       107 v~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a~--~~~vv~~~~e~~~~~~~~  184 (237)
                      +||+++++|+++|+.|||||||||+|+|+.|++++++||+|||+|+++||||+|++||++  .++++++.+|++.+    
T Consensus        74 v~~~~~~~l~~~g~~viDaTCP~V~k~~~~v~~~~~~Gy~iviiG~~~HpEv~gi~g~~~~~~~~vv~~~~~~~~l----  149 (281)
T PF02401_consen   74 VPPEVYEELKERGLEVIDATCPFVKKIHKIVRKYAKEGYQIVIIGDKNHPEVIGILGYAPEEKAIVVESPEDVEKL----  149 (281)
T ss_dssp             --HHHHHHHHHTTEEEEE---HHHHHHHHHHHHHHHCT-EEEEES-TT-HHHHHHHCCHHTS-EEEESSHHHHHHG----
T ss_pred             CCHHHHHHHHHcCCEEEECCChhHHHHHHHHHHHHhcCCEEEEECCCCCceEEEecccccCCceEEeCChhhhccc----
Confidence            999999999999999999999999999999999999999999999999999999999997  68999999999654    


Q ss_pred             cCCccCCCCchHHHHHHHHHhhhcCCCCCCCCCcceEEEecccCChhhhhhc
Q 026546          185 LGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEI  236 (237)
Q Consensus       185 ~~~q~~~~~~~~~~f~~~f~~~~s~gfdp~~~l~~v~v~nQTTm~~~et~~i  236 (237)
                                                  |..+++++++++||||+.+++++|
T Consensus       150 ----------------------------~~~~~~kv~vvsQTT~~~~~~~~i  173 (281)
T PF02401_consen  150 ----------------------------PISDPKKVAVVSQTTQSVEKFEEI  173 (281)
T ss_dssp             ----------------------------GGSSTTCEEEEE-TTS-HHHHHHH
T ss_pred             ----------------------------CCCCCCeEEEEEeecccHHHHHHH
Confidence                                        334567999999999999999886

The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....

>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed

Probab=100.00  E-value=6.7e-57  Score=445.99  Aligned_cols=171  Identities=29%  Similarity=0.529  Sum_probs=158.7

Q ss_pred             eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcC
Q 026546           25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA  104 (237)
Q Consensus        25 m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirA  104 (237)
                      |+|+||+++||||||+|||++|++++.++ +++||++|||||||+|+++|+++||+++++      ++++++|++|||||
T Consensus         1 m~i~~a~~~GfC~GV~rAi~~~~~~~~~~-~~~i~~lg~ivHN~~vv~~l~~~Gv~~v~~------~~~~~~~~~vii~a   73 (647)
T PRK00087          1 MEIILAKKAGFCFGVKRAVDTAIKTAEEL-KGKIYTLGPLIHNNQVVEKLKKKGIKPIED------IDELNEGDTIIIRS   73 (647)
T ss_pred             CEEEEeCCCCcCccHHHHHHHHHHHHHhc-CCCEEEeCCCcCCHHHHHHHHHCCCEEeCC------HhhCCCCCEEEEeC
Confidence            89999999999999999999999987765 379999999999999999999999999974      78999899999999


Q ss_pred             CCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeeccccC-eeEEEcChhhHHhhhhh
Q 026546          105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDY  183 (237)
Q Consensus       105 HGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a~-~~~vv~~~~e~~~~~~~  183 (237)
                      ||+||+++++|+++|+.|||||||||+|+|+.|++++++||+|||+|+++||||+|+.||++ .++|+++++|++.+   
T Consensus        74 HG~~~~~~~~~~~~~~~viDaTCP~V~k~~~~~~~~~~~g~~ivi~G~~~HpEv~g~~g~~~~~~~vv~~~~~~~~~---  150 (647)
T PRK00087         74 HGVPPEVLEELKDKGLKVIDATCPFVKNIQKLAKKYYEEGYQIVIVGDKNHPEVIGINGWCNNSAIIVEDGEEAEKL---  150 (647)
T ss_pred             CCCCHHHHHHHHHCCCeEEECCCcCchHHHHHHHHHHhCCCEEEEEeCCCCCeeeeeccccCCCEEEECCHHHHhhC---
Confidence            99999999999999999999999999999999999999999999999999999999999996 47899999999653   


Q ss_pred             hcCCccCCCCchHHHHHHHHHhhhcCCCCCCCCCcceEEEecccCChhhhhhc
Q 026546          184 ILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEI  236 (237)
Q Consensus       184 ~~~~q~~~~~~~~~~f~~~f~~~~s~gfdp~~~l~~v~v~nQTTm~~~et~~i  236 (237)
                                                   |  ..+++++++||||+.+++++|
T Consensus       151 -----------------------------~--~~~~~~~~~QTT~~~~~~~~~  172 (647)
T PRK00087        151 -----------------------------P--FDKKICVVSQTTEKQENFEKV  172 (647)
T ss_pred             -----------------------------C--CCCCEEEEEcCCCcHHHHHHH
Confidence                                         1  126899999999999999876

>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids

Probab=93.15  E-value=1.2  Score=41.27  Aligned_cols=137  Identities=18%  Similarity=0.154  Sum_probs=89.4

Q ss_pred             cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHH--h-cCcEEecCCccccccccccC---CCEEEEcCCCCCH
Q 026546           36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLE--E-MAVQNIPVEEGKKQFDVVNK---GDVVVLPAFGAAV  109 (237)
Q Consensus        36 C~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~--~-~Gv~~v~~~~~~~~~~~v~~---g~~VIirAHGv~~  109 (237)
                      |.=|.++-+++.+..++  +-.|.+.|.-=| |+|..-+-  . ..+.++++.+   +++.+|.   ....+++==-.+.
T Consensus        94 CP~V~k~~~~v~~~~~~--Gy~iviiG~~~H-pEv~gi~g~~~~~~~~vv~~~~---~~~~l~~~~~~kv~vvsQTT~~~  167 (281)
T PF02401_consen   94 CPFVKKIHKIVRKYAKE--GYQIVIIGDKNH-PEVIGILGYAPEEKAIVVESPE---DVEKLPISDPKKVAVVSQTTQSV  167 (281)
T ss_dssp             -HHHHHHHHHHHHHHHC--T-EEEEES-TT--HHHHHHHCCHHTS-EEEESSHH---HHHHGGGSSTTCEEEEE-TTS-H
T ss_pred             ChhHHHHHHHHHHHHhc--CCEEEEECCCCC-ceEEEecccccCCceEEeCChh---hhcccCCCCCCeEEEEEeecccH
Confidence            77778887888777664  347999998555 44544431  1 2455565432   3333432   3466777666665


Q ss_pred             ----HHHHHHHhcCCcEE----eCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccc----CeeEEEcChhhH
Q 026546          110 ----EEMVTLNNKNVQIV----DTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEA  177 (237)
Q Consensus       110 ----~v~~~l~~~g~~iv----DaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a----~~~~vv~~~~e~  177 (237)
                          ++.+.|+++.-.+.    |+-|+.-..=|..+++++++-.-+|++|.++-.-+.-+.--|    .+.+.+++++|+
T Consensus       168 ~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~SsNT~kL~eia~~~~~~t~~Ie~~~el  247 (281)
T PF02401_consen  168 EKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNSSNTRKLAEIAKEHGKPTYHIETADEL  247 (281)
T ss_dssp             HHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT-HHHHHHHHHHHHCTTCEEEESSGGG-
T ss_pred             HHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCCccHHHHHHHHHHhCCCEEEeCCcccc
Confidence                66777888877776    999999999999999999999999999999998888776543    468999999999


Q ss_pred             H
Q 026546          178 E  178 (237)
Q Consensus       178 ~  178 (237)
                      .
T Consensus       248 ~  248 (281)
T PF02401_consen  248 D  248 (281)
T ss_dssp             -
T ss_pred             C
Confidence            5

The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....

>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]

Probab=87.99  E-value=7.3  Score=34.43  Aligned_cols=140  Identities=21%  Similarity=0.266  Sum_probs=84.7

Q ss_pred             cchhHHHHHHHcCCc-cee-----cc---eEEEEeCCCCCcccH---HHHHHHHHHHHhhCC-----CCceEEecccccC
Q 026546            5 YTSDIIKKLKENGFE-YTW-----GN---VKVKLAESYGFCWGV---ERAVQIAYEARKQFP-----EEKIWITNEIIHN   67 (237)
Q Consensus         5 ~~s~~i~~~~~~~~~-~~~-----g~---m~I~lA~~~GFC~GV---~RAv~~a~~a~~~~~-----~~~vy~lgeiIHN   67 (237)
                      ..+++.+.++..|+. +.+     .+   ++..+..-.+|+|=+   .+|++...+.+....     +.+++..|+    
T Consensus        12 ~~~~~~~~l~~~G~~~~~~P~i~~~~~~~l~~~l~~l~~~d~vvfTS~~av~~~~~~l~~~~~~~~~~~~i~aVG~----   87 (248)
T COG1587          12 QAEELAALLRKAGAEPLELPLIEIEPLPDLEVALEDLDSADWVVFTSPNAVRFFFEALKEQGLDALKNKKIAAVGE----   87 (248)
T ss_pred             hhHHHHHHHHhCCCcceeecceeeecchhHHHHHhccccCCEEEEECHHHHHHHHHHHHhhcccccccCeEEEEcH----
Confidence            457888899999862 222     22   333333333455422   556666655544332     368999995    


Q ss_pred             HHHHHHHHhcCcEEecCCc--c-cc---ccccccCC--CEEEEcCCCCCHHHHHHHHhcCCcE-----EeCcChhhHHHH
Q 026546           68 PTVNKRLEEMAVQNIPVEE--G-KK---QFDVVNKG--DVVVLPAFGAAVEEMVTLNNKNVQI-----VDTTCPWVSKVW  134 (237)
Q Consensus        68 ~~Vv~~L~~~Gv~~v~~~~--~-~~---~~~~v~~g--~~VIirAHGv~~~v~~~l~~~g~~i-----vDaTCP~V~kv~  134 (237)
                       .--+.|++.|++..--.+  . ..   .+.+..++  .++++|++|..+...+.|.++|..+     +++.+|... .+
T Consensus        88 -~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~-~~  165 (248)
T COG1587          88 -KTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGGREVLEEKLEERGAEVREVEVYRTEPPPLD-EA  165 (248)
T ss_pred             -HHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCchHHHHHHHHhCCCEEEEEeeeeecCCCcc-HH
Confidence             667999999977443211  1 11   22222222  4578888888899999999999988     444444444 55


Q ss_pred             HHHHHHhhCCCeEEEE
Q 026546          135 TSVEKHKKGDYTSIIH  150 (237)
Q Consensus       135 ~~v~~~~~~Gy~ivIi  150 (237)
                      .....+..+++.+|++
T Consensus       166 ~~~~~~~~~~~d~v~f  181 (248)
T COG1587         166 TLIELLKLGEVDAVVF  181 (248)
T ss_pred             HHHHHHHhCCCCEEEE
Confidence            5556666666655544

>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []

Probab=87.69  E-value=7.3  Score=33.16  Aligned_cols=139  Identities=16%  Similarity=0.215  Sum_probs=79.6

Q ss_pred             hhHHHHHHHcCCcceecc-eEEEE-----------e-----CCCCCcccHHHHHHHHHHHHh-------hCCCCceEEec
Q 026546            7 SDIIKKLKENGFEYTWGN-VKVKL-----------A-----ESYGFCWGVERAVQIAYEARK-------QFPEEKIWITN   62 (237)
Q Consensus         7 s~~i~~~~~~~~~~~~g~-m~I~l-----------A-----~~~GFC~GV~RAv~~a~~a~~-------~~~~~~vy~lg   62 (237)
                      |++.+++++.|+....=+ +++.-           .     ..-++.|==.+||+...+.++       ...+.++|+.|
T Consensus         1 ~~l~~~l~~~G~~~~~~P~i~~~~~~~~~~l~~~l~~l~~~~~d~viftS~~av~~~~~~l~~~~~~~~~~~~~~i~avG   80 (231)
T PF02602_consen    1 SELAALLRALGAEVIELPLIEIEPLPDLASLEAALEQLPPGNYDWVIFTSPNAVRAFFKALQSAGADLRLLKNIKIFAVG   80 (231)
T ss_dssp             -HHHHHHHHTTEEEEEEESEEEEECCHHHHHHHHHHHHTGCCSSEEEESSHHHHHHHHHHHHHTTHHHHHHHHSEEEESS
T ss_pred             CHHHHHHHHCCCcEEEECCEEEEeCCCHHHHHHHHHhcccCCCCEEEEECHHHHHHHHHHHhhhhhhhhhccCCeEEEEc
Confidence            567788888885554433 23332           1     344455544566666444332       11135799887


Q ss_pred             ccccCHHHHHHHHhcCcEE--ecC-Cccccc----cc-cccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcC---hhhH
Q 026546           63 EIIHNPTVNKRLEEMAVQN--IPV-EEGKKQ----FD-VVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTC---PWVS  131 (237)
Q Consensus        63 eiIHN~~Vv~~L~~~Gv~~--v~~-~~~~~~----~~-~v~~g~~VIirAHGv~~~v~~~l~~~g~~ivDaTC---P~V~  131 (237)
                           +..-+.|++.|+..  +.. ....+.    +. .+..+.++++++.+..+...+.|+++|+.|.-..|   |...
T Consensus        81 -----~~Ta~~l~~~G~~~~~~~~~~~~s~~L~~~l~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~  155 (231)
T PF02602_consen   81 -----PKTAEALREYGFQPDFVPSSEGSSEGLAELLKEQLRGKRVLILRGEGGRPDLPEKLREAGIEVTEVIVYETPPEE  155 (231)
T ss_dssp             -----HHHHHHHHHTT-EECEE-TTSSSHHHHHGGHHHCCTTEEEEEEESSSSCHHHHHHHHHTTEEEEEEECEEEEEHH
T ss_pred             -----HHHHHHHHHcCCCccccCCCCCCHHHHHHHHHhhCCCCeEEEEcCCCccHHHHHHHHHCCCeEEEEEEeeccccc
Confidence                 46678999999997  554 222122    22 23334578899999999999999999988733222   3333


Q ss_pred             HHHHHHHHHhhCCCeEEEE
Q 026546          132 KVWTSVEKHKKGDYTSIIH  150 (237)
Q Consensus       132 kv~~~v~~~~~~Gy~ivIi  150 (237)
                      .--.....+.+..+.+|++
T Consensus       156 ~~~~~~~~l~~~~~~~v~f  174 (231)
T PF02602_consen  156 LSPELKEALDRGEIDAVVF  174 (231)
T ss_dssp             HHHHHHHHHHHTTTSEEEE
T ss_pred             chHHHHHHHHcCCCCEEEE
Confidence            3344445555555544444

The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....

>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=87.30  E-value=3  Score=37.63  Aligned_cols=109  Identities=14%  Similarity=0.134  Sum_probs=69.2

Q ss_pred             CHHHHHHHHhcCc---EEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcE-EeCcChhhHHHHHHHHHHhh
Q 026546           67 NPTVNKRLEEMAV---QNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKK  142 (237)
Q Consensus        67 N~~Vv~~L~~~Gv---~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~i-vDaTCP~V~kv~~~v~~~~~  142 (237)
                      -+.+.+.|.++|.   .++.+..+ +.+..-..+..|.+-..|-..+..+.++++|+.. ||||=||-..+++.+.+.++
T Consensus        12 ~r~la~~L~~~g~v~~sv~t~~g~-~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~   90 (249)
T PF02571_consen   12 GRKLAERLAEAGYVIVSVATSYGG-ELLKPELPGLEVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACR   90 (249)
T ss_pred             HHHHHHHHHhcCCEEEEEEhhhhH-hhhccccCCceEEECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHh
Confidence            3567788888884   44443211 1111111234688888887788888999999986 99999999999999988776


Q ss_pred             C-CCeEEEEecCCCcceeeeccccCeeEEEcChhhHHhhh
Q 026546          143 G-DYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVC  181 (237)
Q Consensus       143 ~-Gy~ivIiG~~~HpEv~g~~g~a~~~~vv~~~~e~~~~~  181 (237)
                      + |-.-+=+-.+.   .....  .++.+.+.|.+|+-...
T Consensus        91 ~~~ipylR~eRp~---~~~~~--~~~~~~v~~~~eA~~~l  125 (249)
T PF02571_consen   91 ELGIPYLRFERPS---WQPEP--DDNWHYVDSYEEAAELL  125 (249)
T ss_pred             hcCcceEEEEcCC---cccCC--CCeEEEeCCHHHHHHHH
Confidence            5 44433333322   11100  23466778888875543

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process

>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed

Probab=86.31  E-value=3.1  Score=38.78  Aligned_cols=138  Identities=12%  Similarity=0.150  Sum_probs=88.1

Q ss_pred             cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhc--CcEEecCCccccccccc--cC-CCEEEEcCCCCCHH
Q 026546           36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM--AVQNIPVEEGKKQFDVV--NK-GDVVVLPAFGAAVE  110 (237)
Q Consensus        36 C~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~--Gv~~v~~~~~~~~~~~v--~~-g~~VIirAHGv~~~  110 (237)
                      |.=|+++-..+.+..++  +-.|.+.|+==| |.|..-+---  ...++++.   ++++.+  +. ..+.+++==-.+.+
T Consensus        96 CP~V~k~~~~v~~~~~~--Gy~vvi~G~~~H-pEv~gi~g~~~~~~~vv~~~---~e~~~l~~~~~~~v~vvsQTT~~~~  169 (298)
T PRK01045         96 CPLVTKVHKEVARMSRE--GYEIILIGHKGH-PEVEGTMGQAPGGVYLVESP---EDVAKLEVKDPDKLALVTQTTLSVD  169 (298)
T ss_pred             CccchHHHHHHHHHHhC--CCEEEEEeCCCC-CeeeeeccCcCCCEEEEcCH---HHHhhcccCCCCcEEEEEcCCCcHH
Confidence            66666666666665554  235777776444 3332222111  12233332   133344  22 23445554444444


Q ss_pred             ----HHHHHHhcC--CcE--EeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccc----CeeEEEcChhhHH
Q 026546          111 ----EMVTLNNKN--VQI--VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAE  178 (237)
Q Consensus       111 ----v~~~l~~~g--~~i--vDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a----~~~~vv~~~~e~~  178 (237)
                          +.+.|+++.  +.+  .|+-|.....=|+.+++++++=--+|++|.++-.-+.=+..-|    .+.+.+++.+|++
T Consensus       170 ~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsNT~kL~~i~~~~~~~t~~Ie~~~el~  249 (298)
T PRK01045        170 DTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNSSNSNRLREVAEEAGAPAYLIDDASEID  249 (298)
T ss_pred             HHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHHCCCEEEECChHHCc
Confidence                555666554  777  9999999999999999999999999999999999888775443    4678899999986


Q ss_pred             h
Q 026546          179 Y  179 (237)
Q Consensus       179 ~  179 (237)
                      .
T Consensus       250 ~  250 (298)
T PRK01045        250 P  250 (298)
T ss_pred             H
Confidence            3

>PRK08057 cobalt-precorrin-6x reductase; Reviewed

Probab=85.09  E-value=4.7  Score=36.42  Aligned_cols=117  Identities=14%  Similarity=0.200  Sum_probs=68.8

Q ss_pred             eEEecccccCHHHHHHHHhcCcEEecCCccc-cccccccCCCEEEEcCCCCCHHHHHHHHhcCCcE-EeCcChhhHHHHH
Q 026546           58 IWITNEIIHNPTVNKRLEEMAVQNIPVEEGK-KQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQI-VDTTCPWVSKVWT  135 (237)
Q Consensus        58 vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~-~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~i-vDaTCP~V~kv~~  135 (237)
                      |+++|==---+.+.+.|.++|..++-..-+. ....  ..+..|..-..|-..+..+.+++.++.. ||||=||-..+.+
T Consensus         5 IlvlgGT~egr~la~~L~~~g~~v~~Svat~~g~~~--~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~   82 (248)
T PRK08057          5 ILLLGGTSEARALARALAAAGVDIVLSLAGRTGGPA--DLPGPVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISA   82 (248)
T ss_pred             EEEEechHHHHHHHHHHHhCCCeEEEEEccCCCCcc--cCCceEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHH
Confidence            4443333344566777777777655332110 0111  1133465666666677888888888876 9999999999999


Q ss_pred             HHHHHhhC-CCeEEEEecCCCcceeeeccccCeeEEEcChhhHHhhh
Q 026546          136 SVEKHKKG-DYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVC  181 (237)
Q Consensus       136 ~v~~~~~~-Gy~ivIiG~~~HpEv~g~~g~a~~~~vv~~~~e~~~~~  181 (237)
                      .+.+..++ |-.-+=+-.   |+..  ....+..+.+.|.+|+....
T Consensus        83 ~a~~ac~~~~ipyiR~eR---~~~~--~~~~~~~~~v~s~~~a~~~l  124 (248)
T PRK08057         83 NAAAACRALGIPYLRLER---PSWL--PQPGDRWIEVDDIEEAAEAL  124 (248)
T ss_pred             HHHHHHHHhCCcEEEEeC---CCcC--CCCCCCEEEECCHHHHHHHh
Confidence            88887665 444444433   2210  00123456778888875543

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=82.57  E-value=2.6  Score=35.85  Aligned_cols=49  Identities=14%  Similarity=0.025  Sum_probs=33.8

Q ss_pred             HHHHHHHHhcCCcE-EeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcc
Q 026546          109 VEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEE  157 (237)
Q Consensus       109 ~~v~~~l~~~g~~i-vDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpE  157 (237)
                      ...++.+.+++..+ +|+|+..-.+..+.++.+.+.||+|.|+--.-+||
T Consensus        83 ~~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e  132 (199)
T PF06414_consen   83 EKLIEYAIENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPE  132 (199)
T ss_dssp             HHHHHHHHHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HH
T ss_pred             HHHHHHHHHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHH
Confidence            45667777777766 89999999999999999999999999887665544

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A

Probab=81.14  E-value=2.1  Score=31.78  Aligned_cols=33  Identities=24%  Similarity=0.469  Sum_probs=24.5

Q ss_pred             EcCCCCCHH----HHHHHHhcCCcEEeCcChhhHHHHH
Q 026546          102 LPAFGAAVE----EMVTLNNKNVQIVDTTCPWVSKVWT  135 (237)
Q Consensus       102 irAHGv~~~----v~~~l~~~g~~ivDaTCP~V~kv~~  135 (237)
                      +|-.|+...    ..+.++++|++|+ .+||||.+--+
T Consensus        34 ~rGqGia~~L~~~~l~~a~~~~~kv~-p~C~y~~~~~~   70 (78)
T PF14542_consen   34 LRGQGIAKKLVEAALDYARENGLKVV-PTCSYVAKYFR   70 (78)
T ss_dssp             SSTTTHHHHHHHHHHHHHHHTT-EEE-ETSHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHHCCCEEE-EECHHHHHHHH
Confidence            456677655    4667788999999 99999987653

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=80.05  E-value=9.1  Score=31.53  Aligned_cols=96  Identities=11%  Similarity=0.027  Sum_probs=65.4

Q ss_pred             HHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHH-----
Q 026546           42 AVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLN-----  116 (237)
Q Consensus        42 Av~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~-----  116 (237)
                      .-.+|...++.  +-+|+++.   .+|.-.++|.+.|+...++      ..++-++.-|||.+---++++.+-+.     
T Consensus        13 G~~~a~~L~~~--g~~v~~~d---~~~~~~~~~~~~g~~~~~s------~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~   81 (163)
T PF03446_consen   13 GSAMARNLAKA--GYEVTVYD---RSPEKAEALAEAGAEVADS------PAEAAEQADVVILCVPDDDAVEAVLFGENIL   81 (163)
T ss_dssp             HHHHHHHHHHT--TTEEEEEE---SSHHHHHHHHHTTEEEESS------HHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred             HHHHHHHHHhc--CCeEEeec---cchhhhhhhHHhhhhhhhh------hhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence            34566666654  24688776   6789999999999998875      34443332366666555566655544     


Q ss_pred             ---hcCCcEEeCcChhhHHHHHHHHHHhhCCCeEE
Q 026546          117 ---NKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSI  148 (237)
Q Consensus       117 ---~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~iv  148 (237)
                         .+|-.+||+|=-.....++.++++.++|...|
T Consensus        82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~v  116 (163)
T PF03446_consen   82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVRYV  116 (163)
T ss_dssp             GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEE
T ss_pred             hccccceEEEecCCcchhhhhhhhhhhhhccceee
Confidence               37889999999999999999999999995544

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	237
3dnf_A	297	Structure Of (e)-4-hydroxy-3-methyl-but-2-enyl Diph		3e-15
4eb3_A	327	Crystal Structure Of Isph In Complex With Iso-hmbpp		2e-10
3f7t_A	328	Structure Of Active Isph Shows A Novel Fold With A		2e-10
3t0g_A	328	Isph:hmbpp (Substrate) Structure Of The T167c Mutan		2e-10
3urk_A	324	Isph In Complex With Propynyl Diphosphate (1061) Le		2e-10
4h4c_A	323	Isph In Complex With (e)-4-fluoro-3-methylbut-2-eny		2e-10
3szu_A	328	Isph:hmbpp Complex Structure Of E126q Mutant Length		3e-10
3t0f_A	328	Isph:hmbpp (Substrate) Structure Of The E126d Mutan		3e-10
3zgl_A	332	Crystal Structures Of Escherichia Coli Isph In Comp		1e-09
3ke8_A	326	Crystal Structure Of Isph:hmbpp-Complex Length = 32		1e-09

>pdb|3DNF|A Chain A, Structure Of (e)-4-hydroxy-3-methyl-but-2-enyl Diphosphate Reductase, The Terminal Enzyme Of The Non-mevalonate Pathway Length = 297

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 86/156 (55%), Gaps = 12/156 (7%)
Query: 25  VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84
           V + +AE  GFC+GV+RAV++A E+ K+  + K++    IIHNP    RL+ + V     
Sbjct: 2   VDIIIAEHAGFCFGVKRAVKLAEESLKE-SQGKVYTLGPIIHNPQEVNRLKNLGVFPSQG 60
Query: 85  EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGD 144
           EE K+       GD V++ + G   E+   L  K ++++D TCP+V  V  +V +  +  
Sbjct: 61  EEFKE-------GDTVIIRSHGIPPEKEEALRKKGLKVIDATCPYVKAVHEAVCQLTREG 113
Query: 145 YTSIIHGKYSHEETVATASFA----GKYIIVKNMKE 176
           Y  ++ G+ +H E + T  +     GK I+V+ +++
Sbjct: 114 YFVVLVGEKNHPEVIGTLGYLRACNGKGIVVETLED 149

>pdb|4EB3|A Chain A, Crystal Structure Of Isph In Complex With Iso-hmbpp Length = 327

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 24/200 (12%)
Query: 23  GNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNI 82
           G++++ LA   GFC GV+RA+ I   A   +    I++ +E++HN  V   L E     I
Sbjct: 11  GSMQILLANPRGFCAGVDRAISIVENALAIY-GAPIYVRHEVVHNRYVVDSLRERGAIFI 69
Query: 83  PVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKK 142
                 +Q   V  G +++  A G +        ++++ + D TCP V+KV   V +  +
Sbjct: 70  ------EQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASR 123
Query: 143 GDYTSIIHGKYSHEETVATASF-----AGKYII----------VKNMKEAEYVCDYILGG 187
               SI+ G   H E   T         G Y++          VKN ++  ++    L  
Sbjct: 124 RGEESILIGHAGHPEVEGTMGQYSNPEGGMYLVESPDDVWKLTVKNEEKLSFMTQTTLS- 182
Query: 188 ELNGSSSTKEAFLEKFKKAV 207
            ++ +S   +A  ++F K V
Sbjct: 183 -VDDTSDVIDALRKRFPKIV 201

>pdb|3F7T|A Chain A, Structure Of Active Isph Shows A Novel Fold With A [3fe-4s] Cluster In The Catalytic Centre Length = 328

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 24/200 (12%)
Query: 23  GNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNI 82
           G++++ LA   GFC GV+RA+ I   A   +    I++ +E++HN  V   L E     I
Sbjct: 11  GSMQILLANPRGFCAGVDRAISIVENALAIYGA-PIYVRHEVVHNRYVVDSLRERGAIFI 69
Query: 83  PVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKK 142
                 +Q   V  G +++  A G +        ++++ + D TCP V+KV   V +  +
Sbjct: 70  ------EQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASR 123
Query: 143 GDYTSIIHGKYSHEETVATASF-----AGKYII----------VKNMKEAEYVCDYILGG 187
               SI+ G   H E   T         G Y++          VKN ++  ++    L  
Sbjct: 124 RGEESILIGHAGHPEVEGTMGQYSNPEGGMYLVESPDDVWKLTVKNEEKLSFMTQTTLS- 182
Query: 188 ELNGSSSTKEAFLEKFKKAV 207
            ++ +S   +A  ++F K V
Sbjct: 183 -VDDTSDVIDALRKRFPKIV 201

>pdb|3T0G|A Chain A, Isph:hmbpp (Substrate) Structure Of The T167c Mutant Length = 328

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 24/200 (12%)
Query: 23  GNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNI 82
           G++++ LA   GFC GV+RA+ I   A   +    I++ +E++HN  V   L E     I
Sbjct: 11  GSMQILLANPRGFCAGVDRAISIVENALAIY-GAPIYVRHEVVHNRYVVDSLRERGAIFI 69
Query: 83  PVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKK 142
                 +Q   V  G +++  A G +        ++++ + D TCP V+KV   V +  +
Sbjct: 70  ------EQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASR 123
Query: 143 GDYTSIIHGKYSHEETVATASF-----AGKYII----------VKNMKEAEYVCDYILGG 187
               SI+ G   H E   T         G Y++          VKN ++  ++    L  
Sbjct: 124 RGEESILIGHAGHPEVEGTMGQYSNPEGGMYLVESPDDVWKLTVKNEEKLSFMTQCTLS- 182
Query: 188 ELNGSSSTKEAFLEKFKKAV 207
            ++ +S   +A  ++F K V
Sbjct: 183 -VDDTSDVIDALRKRFPKIV 201

>pdb|3URK|A Chain A, Isph In Complex With Propynyl Diphosphate (1061) Length = 324

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 24/200 (12%)
Query: 23  GNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNI 82
           G++++ LA   GFC GV+RA+ I   A   +    I++ +E++HN  V   L E     I
Sbjct: 7   GSMQILLANPRGFCAGVDRAISIVENALAIYGA-PIYVRHEVVHNRYVVDSLRERGAIFI 65
Query: 83  PVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKK 142
                 +Q   V  G +++  A G +        ++++ + D TCP V+KV   V +  +
Sbjct: 66  ------EQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASR 119
Query: 143 GDYTSIIHGKYSHEETVATASF-----AGKYII----------VKNMKEAEYVCDYILGG 187
               SI+ G   H E   T         G Y++          VKN ++  ++    L  
Sbjct: 120 RGEESILIGHAGHPEVEGTMGQYSNPEGGMYLVESPDDVWKLTVKNEEKLSFMTQTTLS- 178
Query: 188 ELNGSSSTKEAFLEKFKKAV 207
            ++ +S   +A  ++F K V
Sbjct: 179 -VDDTSDVIDALRKRFPKIV 197

>pdb|4H4C|A Chain A, Isph In Complex With (e)-4-fluoro-3-methylbut-2-enyl Diphosphate Length = 323

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 24/200 (12%)
Query: 23  GNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNI 82
           G++++ LA   GFC GV+RA+ I   A   +    I++ +E++HN  V   L E     I
Sbjct: 7   GSMQILLANPRGFCAGVDRAISIVENALAIYGA-PIYVRHEVVHNRYVVDSLRERGAIFI 65
Query: 83  PVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKK 142
                 +Q   V  G +++  A G +        ++++ + D TCP V+KV   V +  +
Sbjct: 66  ------EQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASR 119
Query: 143 GDYTSIIHGKYSHEETVATASF-----AGKYII----------VKNMKEAEYVCDYILGG 187
               SI+ G   H E   T         G Y++          VKN ++  ++    L  
Sbjct: 120 RGEESILIGHAGHPEVEGTMGQYSNPEGGMYLVESPDDVWKLTVKNEEKLSFMTQTTLS- 178
Query: 188 ELNGSSSTKEAFLEKFKKAV 207
            ++ +S   +A  ++F K V
Sbjct: 179 -VDDTSDVIDALRKRFPKIV 197

>pdb|3SZU|A Chain A, Isph:hmbpp Complex Structure Of E126q Mutant Length = 328

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 88/200 (44%), Gaps = 24/200 (12%)
Query: 23  GNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNI 82
           G++++ LA   GFC GV+RA+ I   A   +    I++ +E++HN  V   L E     I
Sbjct: 11  GSMQILLANPRGFCAGVDRAISIVENALAIY-GAPIYVRHEVVHNRYVVDSLRERGAIFI 69
Query: 83  PVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKK 142
                 +Q   V  G +++  A G +        ++++ + D TCP V+KV   V +  +
Sbjct: 70  ------EQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASR 123
Query: 143 GDYTSIIHGKYSHEETVATASF-----AGKYII----------VKNMKEAEYVCDYILGG 187
               SI+ G   H +   T         G Y++          VKN ++  ++    L  
Sbjct: 124 RGEESILIGHAGHPQVEGTMGQYSNPEGGMYLVESPDDVWKLTVKNEEKLSFMTQTTLS- 182
Query: 188 ELNGSSSTKEAFLEKFKKAV 207
            ++ +S   +A  ++F K V
Sbjct: 183 -VDDTSDVIDALRKRFPKIV 201

>pdb|3T0F|A Chain A, Isph:hmbpp (Substrate) Structure Of The E126d Mutant Length = 328

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 88/200 (44%), Gaps = 24/200 (12%)
Query: 23  GNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNI 82
           G++++ LA   GFC GV+RA+ I   A   +    I++ +E++HN  V   L E     I
Sbjct: 11  GSMQILLANPRGFCAGVDRAISIVENALAIY-GAPIYVRHEVVHNRYVVDSLRERGAIFI 69
Query: 83  PVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKK 142
                 +Q   V  G +++  A G +        ++++ + D TCP V+KV   V +  +
Sbjct: 70  ------EQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASR 123
Query: 143 GDYTSIIHGKYSHEETVATASF-----AGKYII----------VKNMKEAEYVCDYILGG 187
               SI+ G   H +   T         G Y++          VKN ++  ++    L  
Sbjct: 124 RGEESILIGHAGHPDVEGTMGQYSNPEGGMYLVESPDDVWKLTVKNEEKLSFMTQTTLS- 182
Query: 188 ELNGSSSTKEAFLEKFKKAV 207
            ++ +S   +A  ++F K V
Sbjct: 183 -VDDTSDVIDALRKRFPKIV 201

>pdb|3ZGL|A Chain A, Crystal Structures Of Escherichia Coli Isph In Complex With Ambpp A Potent Inhibitor Of The Methylerythritol Phosphate Pathway Length = 332

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 24/198 (12%)
Query: 25  VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84
           +++ LA   GFC GV+RA+ I   A   +    I++ +E++HN  V   L E     I  
Sbjct: 17  MQILLANPRGFCAGVDRAISIVENALAIYGA-PIYVRHEVVHNRYVVDSLRERGAIFI-- 73
Query: 85  EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGD 144
               +Q   V  G +++  A G +        ++++ + D TCP V+KV   V +  +  
Sbjct: 74  ----EQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASRRG 129
Query: 145 YTSIIHGKYSHEETVATASF-----AGKYII----------VKNMKEAEYVCDYILGGEL 189
             SI+ G   H E   T         G Y++          VKN ++  ++    L   +
Sbjct: 130 EESILIGHAGHPEVEGTMGQYSNPEGGMYLVESPDDVWKLTVKNEEKLSFMTQTTLS--V 187
Query: 190 NGSSSTKEAFLEKFKKAV 207
           + +S   +A  ++F K V
Sbjct: 188 DDTSDVIDALRKRFPKIV 205

>pdb|3KE8|A Chain A, Crystal Structure Of Isph:hmbpp-Complex Length = 326

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 24/198 (12%)
Query: 25  VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84
           +++ LA   GFC GV+RA+ I   A   +    I++ +E++HN  V   L E     I  
Sbjct: 11  MQILLANPRGFCAGVDRAISIVENALAIYGA-PIYVRHEVVHNRYVVDSLRERGAIFI-- 67
Query: 85  EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGD 144
               +Q   V  G +++  A G +        ++++ + D TCP V+KV   V +  +  
Sbjct: 68  ----EQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASRRG 123
Query: 145 YTSIIHGKYSHEETVATASF-----AGKYII----------VKNMKEAEYVCDYILGGEL 189
             SI+ G   H E   T         G Y++          VKN ++  ++    L   +
Sbjct: 124 EESILIGHAGHPEVEGTMGQYSNPEGGMYLVESPDDVWKLTVKNEEKLSFMTQTTLS--V 181
Query: 190 NGSSSTKEAFLEKFKKAV 207
           + +S   +A  ++F K V
Sbjct: 182 DDTSDVIDALRKRFPKIV 199

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	237
3dnf_A	297	ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphospha	3e-26
3szu_A	328	ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate red	2e-17

>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus} Length = 297

 Score =  102 bits (256), Expect = 3e-26
 Identities = 45/157 (28%), Positives = 84/157 (53%), Gaps = 12/157 (7%)

Query: 26  KVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVE 85
            + +AE  GFC+GV+RAV++A E+ K+  + K++    IIHNP    RL+ + V      
Sbjct: 3   DIIIAEHAGFCFGVKRAVKLAEESLKES-QGKVYTLGPIIHNPQEVNRLKNLGVF---PS 58

Query: 86  EGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDY 145
           +     +   +GD V++ + G   E+   L  K ++++D TCP+V  V  +V +  +  Y
Sbjct: 59  Q----GEEFKEGDTVIIRSHGIPPEKEEALRKKGLKVIDATCPYVKAVHEAVCQLTREGY 114

Query: 146 TSIIHGKYSHEETVATA----SFAGKYIIVKNMKEAE 178
             ++ G+ +H E + T     +  GK I+V+ +++  
Sbjct: 115 FVVLVGEKNHPEVIGTLGYLRACNGKGIVVETLEDIG 151

>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A* Length = 328

 Score = 78.4 bits (194), Expect = 2e-17
 Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 11/142 (7%)

Query: 23  GNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNI 82
           G++++ LA   GFC GV+RA+ I   A   +    I++ +E++HN  V   L E     I
Sbjct: 11  GSMQILLANPRGFCAGVDRAISIVENALAIY-GAPIYVRHEVVHNRYVVDSLRERGA--I 67

Query: 83  PVEEGKKQFDVVNKGDVVVLPAFG--AAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKH 140
            +E+       V  G +++  A G   AV       ++++ + D TCP V+KV   V + 
Sbjct: 68  FIEQ----ISEVPDGAILIFSAHGVSQAVRNEA--KSRDLTVFDATCPLVTKVHMEVARA 121

Query: 141 KKGDYTSIIHGKYSHEETVATA 162
            +    SI+ G   H +   T 
Sbjct: 122 SRRGEESILIGHAGHPQVEGTM 143

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	237
3szu_A	328	ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate red	100.0
3dnf_A	297	ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphospha	100.0
3dnf_A	297	ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphospha	88.09
2xdq_A	460	Light-independent protochlorophyllide reductase S;	83.69
3szu_A	328	ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate red	82.68
2k1g_A	135	Lipoprotein SPR; solution structure, bacterial lip	82.58

>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*

Probab=100.00  E-value=5.1e-65  Score=467.99  Aligned_cols=177  Identities=24%  Similarity=0.388  Sum_probs=163.3

Q ss_pred             eecceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEE
Q 026546           21 TWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVV  100 (237)
Q Consensus        21 ~~g~m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~V  100 (237)
                      -.|.|.|+||+++||||||+|||++|++++++++ .|||++|||||||+|+++|+++|++|+++      ++++|+|++|
T Consensus         9 ~~~~~~i~lA~~~GFC~GV~RAI~~ae~al~~~~-~~iy~~g~IVHN~~Vv~~L~~~Gv~~ve~------l~ev~~g~~V   81 (328)
T 3szu_A            9 HHGSMQILLANPRGFCAGVDRAISIVENALAIYG-APIYVRHEVVHNRYVVDSLRERGAIFIEQ------ISEVPDGAIL   81 (328)
T ss_dssp             ----CEEEECSSCSCCHHHHHHHHHHHHHHHHHC-SCEEEESCSSSCHHHHHHHHHTTEEEESS------GGGSCTTCEE
T ss_pred             cCCceEEEEeCCCCcCccHHHHHHHHHHHHHhcC-CCEEEeCCCccCHHHHHHHHHCCCEEecc------hhhCCCCCEE
Confidence            3588999999999999999999999999998875 58999999999999999999999999974      8999999999


Q ss_pred             EEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccc--C--eeEEEcChhh
Q 026546          101 VLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA--G--KYIIVKNMKE  176 (237)
Q Consensus       101 IirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a--~--~~~vv~~~~e  176 (237)
                      ||||||+||+++++|++||+.|||||||||+|+|++|++++++||+||||||++||||+||+||+  +  .+++|++++|
T Consensus        82 IirAHGv~~~v~~~a~~rgl~iiDATCP~V~Kvh~~v~~~~~~Gy~iiiiG~~~HpEV~G~~G~~~~~~g~~~vV~~~ed  161 (328)
T 3szu_A           82 IFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASRRGEESILIGHAGHPQVEGTMGQYSNPEGGMYLVESPDD  161 (328)
T ss_dssp             EECTTCCCHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHTCEEEEESCTTCHHHHHHHTTCCCTTSCEEEECSHHH
T ss_pred             EEECCCCCHHHHHHHHHCCCEEEECCCcchHHHHHHHHHHHhCCCEEEEEccCCCceEEeecccccCCCCcEEEECCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999  3  6899999999


Q ss_pred             HHhhhhhhcCCccCCCCchHHHHHHHHHhhhcCCCCCCCCCcceEEEecccCChhhhhhc
Q 026546          177 AEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEI  236 (237)
Q Consensus       177 ~~~~~~~~~~~q~~~~~~~~~~f~~~f~~~~s~gfdp~~~l~~v~v~nQTTm~~~et~~i  236 (237)
                      ++.+                                +..+++++++++|||||+++|++|
T Consensus       162 v~~l--------------------------------~~~~~~kv~~vsQTT~s~~~~~~i  189 (328)
T 3szu_A          162 VWKL--------------------------------TVKNEEKLSFMTQTTLSVDDTSDV  189 (328)
T ss_dssp             HHHC--------------------------------CCSCTTSEEEEECTTSCHHHHHHH
T ss_pred             HHhC--------------------------------CcCCCCeEEEEEecCCcHHHHHHH
Confidence            9754                                235678999999999999999987

>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}

Probab=100.00  E-value=1.3e-64  Score=460.23  Aligned_cols=170  Identities=31%  Similarity=0.532  Sum_probs=160.4

Q ss_pred             eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcC
Q 026546           25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA  104 (237)
Q Consensus        25 m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirA  104 (237)
                      |+|+||+++||||||+|||++|++++++++ +|||++|||||||+|+++|+++|++|+++       +++|+|++|||||
T Consensus         2 m~I~lA~~~GFC~GV~RAI~~a~~al~~~~-~~iy~~g~IVHN~~Vv~~L~~~Gv~~v~~-------~ev~~g~~VIirA   73 (297)
T 3dnf_A            2 VDIIIAEHAGFCFGVKRAVKLAEESLKESQ-GKVYTLGPIIHNPQEVNRLKNLGVFPSQG-------EEFKEGDTVIIRS   73 (297)
T ss_dssp             CEEEECTTCSSCHHHHHHHHHHHHHTTTCC-SCEEESSCSSSCHHHHHHHHHHTEEECCS-------SCCCTTCEEEECT
T ss_pred             eEEEEeCCCCCCccHHHHHHHHHHHHHhcC-CCEEEeCCcccCHHHHHHHHhCCCEEech-------hhCCCCCEEEEEC
Confidence            899999999999999999999999999875 69999999999999999999999999973       7788899999999


Q ss_pred             CCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccc----CeeEEEcChhhHHhh
Q 026546          105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEYV  180 (237)
Q Consensus       105 HGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a----~~~~vv~~~~e~~~~  180 (237)
                      ||+||+++++|++||+.|||||||||+|+|++|++++++||+|||||+++||||+||+||+    +++++|++++|++.+
T Consensus        74 HGv~~~v~~~a~~rgl~iiDATCP~V~Kvh~~v~~~~~~Gy~iiiiG~~~HpEV~G~~g~~~~~~~~~~vV~~~ed~~~l  153 (297)
T 3dnf_A           74 HGIPPEKEEALRKKGLKVIDATCPYVKAVHEAVCQLTREGYFVVLVGEKNHPEVIGTLGYLRACNGKGIVVETLEDIGEA  153 (297)
T ss_dssp             TCCCHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHTTCCEEEESSGGGGGGG
T ss_pred             CCCCHHHHHHHHHCCCEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCceEEeeccccccCCCcEEEEcCHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999999999    468999999999654


Q ss_pred             hhhhcCCccCCCCchHHHHHHHHHhhhcCCCCCCCCCcceEEEecccCChhhhhhc
Q 026546          181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEI  236 (237)
Q Consensus       181 ~~~~~~~q~~~~~~~~~~f~~~f~~~~s~gfdp~~~l~~v~v~nQTTm~~~et~~i  236 (237)
                                                        .+++++++++|||||+++|++|
T Consensus       154 ----------------------------------~~~~kv~~vsQTT~s~~~~~~i  175 (297)
T 3dnf_A          154 ----------------------------------LKHERVGIVAQTTQNEEFFKEV  175 (297)
T ss_dssp             ----------------------------------GGCSEEEEEECTTCCHHHHHHH
T ss_pred             ----------------------------------CCCCcEEEEEecCCcHHHHHHH
Confidence                                              1346999999999999999987

>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}

Probab=88.09  E-value=3.5  Score=37.26  Aligned_cols=138  Identities=17%  Similarity=0.081  Sum_probs=99.0

Q ss_pred             cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHh-----cCcEEecCCccccccccccCCC-EEEEcCCCCCH
Q 026546           36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEE-----MAVQNIPVEEGKKQFDVVNKGD-VVVLPAFGAAV  109 (237)
Q Consensus        36 C~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~-----~Gv~~v~~~~~~~~~~~v~~g~-~VIirAHGv~~  109 (237)
                      |.=|.++=..+.+..++  +..|.+.|.==| |+|..-+-.     -++.++++.+   +++.++..+ ..+++-=-.+.
T Consensus        96 CP~V~Kvh~~v~~~~~~--Gy~iiiiG~~~H-pEV~G~~g~~~~~~~~~~vV~~~e---d~~~l~~~~kv~~vsQTT~s~  169 (297)
T 3dnf_A           96 CPYVKAVHEAVCQLTRE--GYFVVLVGEKNH-PEVIGTLGYLRACNGKGIVVETLE---DIGEALKHERVGIVAQTTQNE  169 (297)
T ss_dssp             CHHHHHHHHHHHHHHHT--TCEEEEESCTTC-HHHHHHHHHHHHTTCCEEEESSGG---GGGGGGGCSEEEEEECTTCCH
T ss_pred             CcchHHHHHHHHHHHhC--CCEEEEEecCCC-ceEEeeccccccCCCcEEEEcCHH---HHHhcCCCCcEEEEEecCCcH
Confidence            67777777777777665  357999999777 888776633     2566776543   344444434 34555444443


Q ss_pred             ----HHHHHHHhc--CCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccc----CeeEEEcChhhHHh
Q 026546          110 ----EEMVTLNNK--NVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEY  179 (237)
Q Consensus       110 ----~v~~~l~~~--g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a----~~~~vv~~~~e~~~  179 (237)
                          ++.+.|++|  .+.+.|+-|.-...=|..+++++++-.-+|++|.++-.-+.=+..-|    .+++.|++.+|++.
T Consensus       170 ~~~~~iv~~L~~r~p~~~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~  249 (297)
T 3dnf_A          170 EFFKEVVGEIALWVKEVKVINTICNATSLRQESVKKLAPEVDVMIIIGGKNSGNTRRLYYISKELNPNTYHIETAEELQP  249 (297)
T ss_dssp             HHHHHHHHHHHHHSSEEEEECCCCSHHHHHHHHHHHHGGGSSEEEEESCTTCHHHHHHHHHHHHHCSSEEEESSGGGCCG
T ss_pred             HHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHhhCCEEEEECCCCCchhHHHHHHHHhcCCCEEEeCChHHCCH
Confidence                456677776  45579999999999999999999999999999998877665554333    45789999999853

>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}

Probab=83.69  E-value=17  Score=33.46  Aligned_cols=104  Identities=13%  Similarity=0.163  Sum_probs=61.5

Q ss_pred             ceEEEEeCCCCCcccHHHHHHHHHHHHhhC-------------------------------------CCCceEEeccccc
Q 026546           24 NVKVKLAESYGFCWGVERAVQIAYEARKQF-------------------------------------PEEKIWITNEIIH   66 (237)
Q Consensus        24 ~m~I~lA~~~GFC~GV~RAv~~a~~a~~~~-------------------------------------~~~~vy~lgeiIH   66 (237)
                      +..|+.+..-||..+...+.+.|.+++-+.                                     ..+.|-++|++  
T Consensus       128 ~ipVi~v~~~Gf~~~~~~G~~~a~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnilG~~--  205 (460)
T 2xdq_A          128 GIPIVVARANGLDYAFTQGEDTVLAAMAARCPTSTAISDPEERNPIQRLLNFGKKKEEVQAQSSQYHPHPPLVLFGSL--  205 (460)
T ss_dssp             SSCEEEEECCTTTCCTTHHHHHHHHHHHTTCCCCC-----------------------------CCCSCCCEEEESCC--
T ss_pred             CCcEEEEecCCccccHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccCCCCcEEEEEec--
Confidence            367888888899855555555554433211                                     11268899986  


Q ss_pred             CHHH----HHHHHhcCcEEecCC--ccccccccccCCCEEEEcCCCCCHHHHHHH-HhcCCcEEeCcChhh
Q 026546           67 NPTV----NKRLEEMAVQNIPVE--EGKKQFDVVNKGDVVVLPAFGAAVEEMVTL-NNKNVQIVDTTCPWV  130 (237)
Q Consensus        67 N~~V----v~~L~~~Gv~~v~~~--~~~~~~~~v~~g~~VIirAHGv~~~v~~~l-~~~g~~ivDaTCP~V  130 (237)
                      |+..    ..-|+++|+.++.-.  ...+++..++.....+.-.+-.. ..-+.| ++.|...+....|+-
T Consensus       206 ~~~~~~ei~~lL~~~Gi~v~~~~~~~~~~el~~~~~A~~ni~~~~~~~-~~A~~Le~~~giP~~~~~~P~G  275 (460)
T 2xdq_A          206 PDPVVTQLTLELKKQGIKVSGWLPAKRYTELPVIDEGYYVAGVNPFLS-RTATTLIRRRKCQLITAPFPIG  275 (460)
T ss_dssp             CHHHHHHHHHHHGGGTCCEEEEESCSSGGGCCCCCTTCEEEESSTTCH-HHHHHHHHTTCCEEECCCCSBH
T ss_pred             CccHHHHHHHHHHHcCCeEEEEeCCCCHHHHHccccCcEEEEcCHhHH-HHHHHHHHHcCCCceecCcCcc
Confidence            7764    556788999876411  11233444444444443333333 555556 567889988888874

>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*

Probab=82.68  E-value=7.2  Score=35.68  Aligned_cols=138  Identities=12%  Similarity=0.147  Sum_probs=97.8

Q ss_pred             cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhc-----CcEEecCCccccccccccC---CCEEEEcCCCC
Q 026546           36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM-----AVQNIPVEEGKKQFDVVNK---GDVVVLPAFGA  107 (237)
Q Consensus        36 C~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~-----Gv~~v~~~~~~~~~~~v~~---g~~VIirAHGv  107 (237)
                      |.=|.++-..+.+..++  +..|.+.|.==| |+|..-+-.-     ++.++++.+   +++.++.   ....+++-==.
T Consensus       108 CP~V~Kvh~~v~~~~~~--Gy~iiiiG~~~H-pEV~G~~G~~~~~~g~~~vV~~~e---dv~~l~~~~~~kv~~vsQTT~  181 (328)
T 3szu_A          108 CPLVTKVHMEVARASRR--GEESILIGHAGH-PQVEGTMGQYSNPEGGMYLVESPD---DVWKLTVKNEEKLSFMTQTTL  181 (328)
T ss_dssp             CHHHHHHHHHHHHHHHH--TCEEEEESCTTC-HHHHHHHTTCCCTTSCEEEECSHH---HHHHCCCSCTTSEEEEECTTS
T ss_pred             CcchHHHHHHHHHHHhC--CCEEEEEccCCC-ceEEeecccccCCCCcEEEECCHH---HHHhCCcCCCCeEEEEEecCC
Confidence            66677777777776665  357999999777 8887766433     466676543   2333332   34555554444


Q ss_pred             C----HHHHHHHHhcCCcE----EeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccc----CeeEEEcChh
Q 026546          108 A----VEEMVTLNNKNVQI----VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMK  175 (237)
Q Consensus       108 ~----~~v~~~l~~~g~~i----vDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a----~~~~vv~~~~  175 (237)
                      +    .++.+.|+++.-.+    .|+-|.-...=|..+++++++---+|++|.++-.-+.=+..-|    .+++.|++.+
T Consensus       182 s~~~~~~iv~~L~~r~p~i~~~~~ntIC~AT~~RQ~av~~lA~~vD~miVVGg~nSSNT~rL~eia~~~g~~ty~Ie~~~  261 (328)
T 3szu_A          182 SVDDTSDVIDALRKRFPKIVGPRKDDICYATTNRQEAVRALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAK  261 (328)
T ss_dssp             CHHHHHHHHHHHHHHCTTCBCCSSCSCCHHHHHHHHHHHHHHHHCSEEEEECCTTCHHHHHHHHHHHHTTCEEEEESSGG
T ss_pred             cHHHHHHHHHHHHHhCcccccCCCCCcCHHHHHHHHHHHHHHHhCCEEEEeCCCCCchHHHHHHHHHHhCCCEEEeCChH
Confidence            4    35667788876655    4999999999999999999999999999998877666554333    3578999999


Q ss_pred             hHHh
Q 026546          176 EAEY  179 (237)
Q Consensus       176 e~~~  179 (237)
                      |++.
T Consensus       262 el~~  265 (328)
T 3szu_A          262 DIQE  265 (328)
T ss_dssp             GCCH
T ss_pred             HCCH
Confidence            9854

>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}

Probab=82.58  E-value=1.6  Score=34.76  Aligned_cols=76  Identities=24%  Similarity=0.453  Sum_probs=50.6

Q ss_pred             CCcccchhHHHHHHHc-CCcceecceEEEEeCCCCC-cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcC
Q 026546            1 MNQEYTSDIIKKLKEN-GFEYTWGNVKVKLAESYGF-CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMA   78 (237)
Q Consensus         1 ~~~~~~s~~i~~~~~~-~~~~~~g~m~I~lA~~~GF-C~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~G   78 (237)
                      |+.+-++.|++..++. |.++.||+.     .+.|| |.|--+   .+++..  ++          |--|..-....+.|
T Consensus         1 mn~~~~~~ii~~a~~~lG~PY~wGG~-----~~~G~DCSGlv~---~vy~~~--~G----------i~lPr~s~~q~~~g   60 (135)
T 2k1g_A            1 MNVDVKSRIMDQYADWKGVRYRLGGS-----TKKGIDCSGFVQ---RTFREQ--FG----------LELPRSTYEQQEMG   60 (135)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCCCSSCC-----BTTBCCHHHHHH---HHHHHT--TC----------CCCCSSHHHHGGGS
T ss_pred             CCHhHHHHHHHHHHHHCCCCccCCCc-----CCCCceeHHHHH---HHHHHc--CC----------CCCCCCHHHHhhCC
Confidence            6677889999988874 899999974     47899 999754   334321  21          22244445555666


Q ss_pred             cEEecCCccccccccccCCCEEEEcC
Q 026546           79 VQNIPVEEGKKQFDVVNKGDVVVLPA  104 (237)
Q Consensus        79 v~~v~~~~~~~~~~~v~~g~~VIirA  104 (237)
                      -. |+       .+++.+||.|.|+.
T Consensus        61 ~~-V~-------~~~l~pGDLvFf~~   78 (135)
T 2k1g_A           61 KS-VS-------RSNLRTGDLVLFRA   78 (135)
T ss_dssp             EE-EC-------GGGCCTTEEEEEEE
T ss_pred             cE-ec-------HHHccCCcEEEECC
Confidence            44 32       46788899998874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	237
d2j7ja3	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	83.97
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	83.71
d1wd7a_	254	Probable uroporphyrinogen-III synthase {Thermus th	83.58
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	82.61
d1xmta_	95	Hypothetical protein AT1g77540 {Thale cress (Arabi	81.51
d1s3la_	165	Putative phosphodiesterase MJ0936 {Methanococcus j	80.48

>d2j7ja3 g.37.1.1 (A:58-85) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=83.97  E-value=0.053  Score=30.93  Aligned_cols=20  Identities=40%  Similarity=0.762  Sum_probs=16.5

Q ss_pred             eCcChhhHHHHHHHHHHhhC
Q 026546          124 DTTCPWVSKVWTSVEKHKKG  143 (237)
Q Consensus       124 DaTCP~V~kv~~~v~~~~~~  143 (237)
                      |.|||||-|.|..--++..+
T Consensus         7 d~tc~fvgktwt~y~kh~ae   26 (28)
T d2j7ja3           7 DDSCSFVGKTWTLYLKHVAE   26 (28)
T ss_dssp             CSSCCCEESSHHHHHHHHHH
T ss_pred             CCcccccchhHHHHHHHHHh
Confidence            88999999999887776543

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=83.71  E-value=1.1  Score=31.33  Aligned_cols=55  Identities=16%  Similarity=0.140  Sum_probs=35.6

Q ss_pred             ccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCC--HHHHHHHHhcCCcEE
Q 026546           63 EIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAA--VEEMVTLNNKNVQIV  123 (237)
Q Consensus        63 eiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~--~~v~~~l~~~g~~iv  123 (237)
                      ++--|| ..++|+++|+.+-..    .+.+.+.+-|.||+++ +++  -.++..++++|+.|+
T Consensus        32 D~~~~~-~t~~L~~~Gi~i~~g----h~~~~i~~~d~vV~Ss-AI~~~npel~~A~~~gIpv~   88 (89)
T d1j6ua1          32 NIEETE-RTAYLRKLGIPIFVP----HSADNWYDPDLVIKTP-AVRDDNPEIVRARMERVPIE   88 (89)
T ss_dssp             CSSCCH-HHHHHHHTTCCEESS----CCTTSCCCCSEEEECT-TCCTTCHHHHHHHHTTCCEE
T ss_pred             eCCCCh-hHHHHHHCCCeEEee----ecccccCCCCEEEEec-CcCCCCHHHHHHHHcCCCcc
Confidence            455555 556899999987532    1234455567666554 444  346788999999885

>d1wd7a_ c.113.1.1 (A:) Probable uroporphyrinogen-III synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: HemD-like
superfamily: HemD-like
family: HemD-like
domain: Probable uroporphyrinogen-III synthase
species: Thermus thermophilus [TaxId: 274]

Probab=83.58  E-value=8.8  Score=30.28  Aligned_cols=109  Identities=11%  Similarity=0.125  Sum_probs=62.1

Q ss_pred             ccHHHHHHHHHHHHh----hCCCCceEEecccccCHHHHHHHHhcCcE--EecCCccccccccccC-CCEEEEcCCC-CC
Q 026546           37 WGVERAVQIAYEARK----QFPEEKIWITNEIIHNPTVNKRLEEMAVQ--NIPVEEGKKQFDVVNK-GDVVVLPAFG-AA  108 (237)
Q Consensus        37 ~GV~RAv~~a~~a~~----~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~--~v~~~~~~~~~~~v~~-g~~VIirAHG-v~  108 (237)
                      .||+.-++...+.-.    ...+.+++..|+     .--+.|++.|+.  +.++.....-++.+.+ ..+++++.+| ..
T Consensus        62 ngV~~~~~~l~~~~~~~~~~l~~~~i~aVG~-----~Ta~aL~~~G~~~~~~~~~~s~~l~~~~~~~~~~~l~~~~~~~~  136 (254)
T d1wd7a_          62 VGVRDLLEAGKALGLDLEGPLAKAFRLARGA-----KAARALKEAGLPPHAVGDGTSKSLLPLLPQGRGVAALQLYGKPL  136 (254)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHTSEEEESSH-----HHHHHHHHTTCCCSEECSSSGGGGGGGCCCCCEEEEEECSSSCC
T ss_pred             HHHHHHHHHHHHcCccHhHHhcCCeEEEECH-----HHHHHHHHcCCCCccCCchhHHHHHHHHhcCCCEEEEecccCCc
Confidence            366666655543211    111357999884     566899999987  3333222223344444 3567888887 66


Q ss_pred             HHHHHHHHhcCCcEEeCcC----hhhHHHHHHHHHHhhCCCeEEEE
Q 026546          109 VEEMVTLNNKNVQIVDTTC----PWVSKVWTSVEKHKKGDYTSIIH  150 (237)
Q Consensus       109 ~~v~~~l~~~g~~ivDaTC----P~V~kv~~~v~~~~~~Gy~ivIi  150 (237)
                      +...+.|+++|+.+....|    |.-...-...+.+.+.+...|++
T Consensus       137 ~~L~~~L~~~G~~v~~v~~Y~t~~~~~~~~~l~~~l~~~~~d~V~f  182 (254)
T d1wd7a_         137 PLLENALAERGYRVLPLMPYRHLPDPEGILRLEEALLRGEVDALAF  182 (254)
T ss_dssp             HHHHHHHHHTTEEEEEECSEECCBCHHHHHHHHHHHHTTCCSEEEE
T ss_pred             HHHHHHHHhccCcceEEEEeeeeccccChHHHHHHHhcCCceEEEe
Confidence            7888999999987744333    33333333444444444444433

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=82.61  E-value=1.7  Score=30.52  Aligned_cols=58  Identities=17%  Similarity=0.224  Sum_probs=38.4

Q ss_pred             EecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCH--HHHHHHHhcCCcEE
Q 026546           60 ITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV--EEMVTLNNKNVQIV  123 (237)
Q Consensus        60 ~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~--~v~~~l~~~g~~iv  123 (237)
                      +-.+.-.||.+ ++|+++|+.+-..-    +-+.+++-|.||+++. +|.  .++.+++++|+.|+
T Consensus        36 sGSD~~~~~~~-~~L~~~Gi~v~~g~----~~~~i~~~d~vV~S~A-I~~~npel~~A~~~gipii   95 (96)
T d1p3da1          36 SGSDIADGVVT-QRLAQAGAKIYIGH----AEEHIEGASVVVVSSA-IKDDNPELVTSKQKRIPVI   95 (96)
T ss_dssp             EEEESCCSHHH-HHHHHTTCEEEESC----CGGGGTTCSEEEECTT-SCTTCHHHHHHHHTTCCEE
T ss_pred             EEEeCCCChhh-hHHHHCCCeEEECC----ccccCCCCCEEEECCC-cCCCCHHHHHHHHcCCCEE
Confidence            33456677766 78888999876532    2344555676666554 653  35778999999986

>d1xmta_ d.108.1.1 (A:) Hypothetical protein AT1g77540 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Acyl-CoA N-acyltransferases (Nat)
superfamily: Acyl-CoA N-acyltransferases (Nat)
family: N-acetyl transferase, NAT
domain: Hypothetical protein AT1g77540
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.51  E-value=0.49  Score=33.79  Aligned_cols=31  Identities=19%  Similarity=0.513  Sum_probs=23.6

Q ss_pred             cCCCCCH----HHHHHHHhcCCcEEeCcChhhHHHH
Q 026546          103 PAFGAAV----EEMVTLNNKNVQIVDTTCPWVSKVW  134 (237)
Q Consensus       103 rAHGv~~----~v~~~l~~~g~~ivDaTCP~V~kv~  134 (237)
                      |-.|+..    +.++.++++|++|+ .+||||.+.|
T Consensus        45 rGqGia~~Lv~~al~~ar~~g~kV~-P~Cpyv~~~~   79 (95)
T d1xmta_          45 RGLGLASHLCVAAFEHASSHSISII-PSCSYVSDTF   79 (95)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTCEEE-ECSHHHHHTH
T ss_pred             CCChHHHHHHHHHHHHHHHCCCEEE-EeCHHHHHHH
Confidence            4456653    45778899999887 9999998755

>d1s3la_ d.159.1.7 (A:) Putative phosphodiesterase MJ0936 {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: YfcE-like
domain: Putative phosphodiesterase MJ0936
species: Methanococcus jannaschii [TaxId: 2190]

Probab=80.48  E-value=8.7  Score=28.11  Aligned_cols=108  Identities=16%  Similarity=0.166  Sum_probs=65.2

Q ss_pred             eEE-EEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEec--CCcccc------------
Q 026546           25 VKV-KLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP--VEEGKK------------   89 (237)
Q Consensus        25 m~I-~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~--~~~~~~------------   89 (237)
                      ||| +++..-|.    -.|++.+.+.+++.+-..|+.+|.++ ++.+.+.|.+....++-  ...+..            
T Consensus         1 MkI~iiSDiHgn----~~al~~vl~~~~~~~~D~ii~~GD~~-~~~~~~~l~~~~~~~~~v~GN~D~~~~~~~~~~~~~~   75 (165)
T d1s3la_           1 MKIGIMSDTHDH----LPNIRKAIEIFNDENVETVIHCGDFV-SLFVIKEFENLNANIIATYGNNDGERCKLKEWLKDIN   75 (165)
T ss_dssp             CEEEEECCCTTC----HHHHHHHHHHHHHSCCSEEEECSCCC-STHHHHHGGGCSSEEEEECCTTCCCHHHHHHHHHHHC
T ss_pred             CEEEEEEeCCCC----HHHHHHHHHHHHhcCCCEEEECCCcc-CHHHHHHHhhcCccEEEEcccccccchhhhHhhhhhc
Confidence            554 45666554    45666665544433224799999998 56788899888766542  111100            


Q ss_pred             ------ccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeee
Q 026546           90 ------QFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVAT  161 (237)
Q Consensus        90 ------~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~  161 (237)
                            +.-.+.-++.-|+=.||-++...+.+                        +...+..++++||-..|.+.-.
T Consensus        76 ~~~~~~~~~~~~~~~~~i~l~Hg~~~~~~~~~------------------------~~~~~~d~v~~GHtH~~~~~~~  129 (165)
T d1s3la_          76 EENIIDDFISVEIDDLKFFITHGHHQSVLEMA------------------------IKSGLYDVVIYGHTHERVFEEV  129 (165)
T ss_dssp             TTCEEESEEEEEETTEEEEEEESCCHHHHHHH------------------------HHHSCCSEEEEECSSCCEEEEE
T ss_pred             ccccCChhhceEECCcEEEEEECCcccHHHHH------------------------hhcCCCCEEEECCcCcceEEEE
Confidence                  00011113344556899887765433                        3356788999999999987654